Citrus Sinensis ID: 003279
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 834 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FUY2 | 931 | Transcriptional corepress | yes | no | 0.844 | 0.756 | 0.581 | 0.0 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | yes | no | 0.336 | 0.184 | 0.340 | 7e-33 | |
| Q00808 | 1356 | Vegetative incompatibilit | yes | no | 0.366 | 0.225 | 0.303 | 1e-30 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | no | 0.321 | 0.213 | 0.302 | 6e-25 | |
| P0CS42 | 433 | Nuclear distribution prot | yes | no | 0.323 | 0.623 | 0.269 | 1e-23 | |
| P0CS43 | 433 | Nuclear distribution prot | N/A | no | 0.323 | 0.623 | 0.269 | 1e-23 | |
| C4Q0P6 | 417 | Lissencephaly-1 homolog O | N/A | no | 0.321 | 0.642 | 0.281 | 8e-23 | |
| P49695 | 742 | Probable serine/threonine | no | no | 0.324 | 0.365 | 0.303 | 9e-22 | |
| O22212 | 554 | U4/U6 small nuclear ribon | no | no | 0.323 | 0.487 | 0.284 | 3e-21 | |
| C3XVT5 | 406 | Lissencephaly-1 homolog O | yes | no | 0.285 | 0.586 | 0.265 | 7e-21 |
| >sp|Q9FUY2|LEUNG_ARATH Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2 | Back alignment and function desciption |
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Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/753 (58%), Positives = 556/753 (73%), Gaps = 49/753 (6%)
Query: 125 RRDSTQHLNDTGDDL-----------RPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKP 173
RRD + N + + L PG + +K YE+R+K +P QR+SLD+A +K
Sbjct: 185 RRDGSHLANGSANGLVGNNSEPVMRQNPGSGSSLASKAYEERVK-MPTQRESLDEAAMK- 242
Query: 174 RLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHG-VSQQVQSRSQQPPLSTQEVKTE 232
R DN+ QLLDP+HA++LK+AA QP+GQ LH T G +S QVQ+R+QQ P S ++K+E
Sbjct: 243 RFGDNVGQLLDPSHASILKSAAASGQPAGQVLHSTSGGMSPQVQTRNQQLPGSAVDIKSE 302
Query: 233 MNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSL--TQPYN 290
+NP + PR A EGSLIG+ GSNQG+ N+TLKGWPLTG DQ RSGLLQQQK +Q ++
Sbjct: 303 INPVLTPRTAVPEGSLIGIPGSNQGSNNLTLKGWPLTGFDQLRSGLLQQQKPFMQSQSFH 362
Query: 291 QLQL------QQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVST 344
QL + QQLML AQQNL S S ++ E+R+L+ML N+R+M L +DG +SVGD++
Sbjct: 363 QLNMLTPQHQQQLML-AQQNLNSQSVSE-ENRRLKMLLNNRSMTLGKDGLGSSVGDVLPN 420
Query: 345 VGSAMQIISPGLPRGDNDLLIKQQQQLQHYSHH----------------------PLSSQ 382
VGS++Q LPRGD D+L+K + L L++
Sbjct: 421 VGSSLQPGGSLLPRGDTDMLLKLKMALLQQQQQNQQQGGGNPPQPQPQPQPLNQLALTNP 480
Query: 383 QSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSG 442
Q Q+SN + QQ+K+ GGS+TMDGS+SN+F+GN+Q KNQ GRKRKQ VSSSGPANSSG
Sbjct: 481 QPQSSNHSIHQQEKLGGGGSITMDGSISNSFRGNEQVLKNQSGRKRKQPVSSSGPANSSG 540
Query: 443 TANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTD 501
TANT GP+PSS S + HTPGDVIS P L H+G SSKS++MFG++G G+LTS NQL D
Sbjct: 541 TANTAGPSPSSAPSTPSTHTPGDVISMPNLPHSGGSSKSMMMFGTEGTGTLTSPSNQLAD 600
Query: 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS 561
MDRFV+DGSLDDNVESFLS +D D RD V R +V KGFTFTE + AST+KV CHFS
Sbjct: 601 MDRFVEDGSLDDNVESFLSQEDGDQRDAVTRCMDVSKGFTFTEVNSVRASTTKVTCCHFS 660
Query: 562 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 621
DGK+LA+ GHDKKAVLW T++ K+TLEEHT ITD+RFSPS RLATSS D+TVRVW
Sbjct: 661 SDGKMLASAGHDKKAVLWYTDTMKPKTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRVW 720
Query: 622 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG 681
D +N YSLRTF GHS+ V SLDFHP K+DL+CSCDN++EIRYWSINNGSC V+K G
Sbjct: 721 DADNKGYSLRTFMGHSSMVTSLDFHPIKDDLICSCDNDNEIRYWSINNGSCTRVYK--GG 778
Query: 682 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSD 741
+TQ+RFQPR+G+ LAA+ N +++LDVETQ R LQGH N ++SVCW+ SG++LASVS+
Sbjct: 779 STQIRFQPRVGKYLAASSANLVNVLDVETQAIRHSLQGHANPINSVCWDPSGDFLASVSE 838
Query: 742 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 801
++V+VW++G+GS+GEC+HELSC GNKF SCVFHP +PSLLVIGCY++LELWNM+ENKT+T
Sbjct: 839 DMVKVWTLGTGSEGECVHELSCNGNKFQSCVFHPAYPSLLVIGCYQSLELWNMSENKTMT 898
Query: 802 LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834
L AH+ L++SLA ST G+VASASHDK VK+WK
Sbjct: 899 LPAHEGLITSLAVSTATGLVASASHDKLVKLWK 931
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Transcription repressor subunit of the SEU-LUG transcriptional corepressor of the C class floral homeotic gene AGAMOUS during the early stages of floral meristem development. Is part of the A class cadastral complex that define the boundaries between the A and C class homeotic genes expression and function. Interacts together with APETALA2 and SEUSS to repress AGAMOUS expression. Also plays a role in ovule and pollen development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
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Score = 143 bits (360), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 151/291 (51%), Gaps = 10/291 (3%)
Query: 547 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 606
++ TS V S F+PDG LA+G D+ LW S T + HT W+ V F+P
Sbjct: 1195 ILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDG 1254
Query: 607 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 666
S LA+ S+D+TVR+WD + L TF GH+ V S+ F+P +L S + +R W
Sbjct: 1255 SMLASGSSDKTVRLWDISSSK-CLHTFQGHTNWVNSVAFNPDGS-MLASGSGDQTVRLWE 1312
Query: 667 INNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH 725
I++ C F+ S + + F P + + + + + + + + C GH N V
Sbjct: 1313 ISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVG 1372
Query: 726 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 784
SV ++ G LAS S D+ VR+WSI S G+C++ L N S VF P +LL G
Sbjct: 1373 SVIFSPDGAILASGSGDQTVRLWSI---SSGKCLYTLQGHNNWVGSIVFSPD-GTLLASG 1428
Query: 785 CYE-TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833
+ T+ LWN++ + L TL H V S+A S+ ++AS S D+ +K+W
Sbjct: 1429 SDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDDETIKLW 1479
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
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Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 155/323 (47%), Gaps = 17/323 (5%)
Query: 519 LSPDDADPRDRVG-----RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 573
SPD R+RV ++ ++ + T Q + +V+S FSPDG+ +A+G D
Sbjct: 891 FSPD----RERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQRVASGSDD 946
Query: 574 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 633
+W S T TLE H + V FSP R+A+ S D+T+++WDT + + +T
Sbjct: 947 HTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCT-QTL 1005
Query: 634 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLG 692
GH +V S+ F P + + D+ + I+ W +G+C + G Q + F P
Sbjct: 1006 EGHGGSVWSVAFSPDGQRVASGSDDKT-IKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQ 1064
Query: 693 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 751
R+ + + ++ I I D + C L+GH + V SV ++ G+ +AS S D +++W S
Sbjct: 1065 RVASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAAS 1124
Query: 752 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-TLTLSAHDKLVS 810
G+ C L G HS F P + T+++W+ T TL H V
Sbjct: 1125 GT---CTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVQ 1181
Query: 811 SLAASTVNGMVASASHDKCVKIW 833
S+A S VAS S DK +KIW
Sbjct: 1182 SVAFSPDGQRVASGSSDKTIKIW 1204
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Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
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Score = 116 bits (291), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 143/278 (51%), Gaps = 10/278 (3%)
Query: 560 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 619
FSPD ++LA+G +DK LW ++ S+LE HT +I + FSP LA++S D +VR
Sbjct: 944 FSPDRQILASGSNDKTVKLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVR 1003
Query: 620 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 679
+W+ + H+ V ++ FHP + ++ + + ++ W+I+ G C
Sbjct: 1004 LWNISTGQ-CFQILLEHTDWVYAVVFHPQGK-IIATGSADCTVKLWNISTGQCLKTLSEH 1061
Query: 680 SGAT-QMRFQPRLGRILA-AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 737
S M + P G++LA A+ + + + D T C L+GH N+V+S ++ +GE +A
Sbjct: 1062 SDKILGMAWSPD-GQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSPNGEIIA 1120
Query: 738 SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796
+ S D+ V++W +G+C+ L+ N F P L +T+ +W++
Sbjct: 1121 TCSTDQTVKIW---DWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNT 1177
Query: 797 NKTLTLS-AHDKLVSSLAASTVNGMVASASHDKCVKIW 833
K + H LVSS+A S +VAS S D+ V+IW
Sbjct: 1178 GKCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTVRIW 1215
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|P0CS42|LIS1_CRYNJ Nuclear distribution protein PAC1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=PAC1 PE=3 SV=1 | Back alignment and function description |
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Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 146/323 (45%), Gaps = 53/323 (16%)
Query: 560 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 619
F P LLA+ D LW E+ ++ TL+ HT+ + DV F P +AT S+D T++
Sbjct: 113 FHPTWTLLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPRGGLMATCSSDLTLK 172
Query: 620 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 679
+WDT N +++T GH +V S+ F P E L+ S + IR W +++G C F
Sbjct: 173 LWDTANQYTNVKTLHGHDHSVSSVRFMPDGETLV-SASRDKTIRVWQVSSGYCIKTFSGH 231
Query: 680 SGATQMRFQPRLGRILAAAIENYIS-ILDVETQVCRLKLQGHKNQVHSVCW--------- 729
+ + GR L +A + S I D T +++L+GH++ V +
Sbjct: 232 AEWVREAVPSEDGRWLVSASNDQTSRIWDFSTGETKMELRGHEHVVECAVFAPVNAYPAI 291
Query: 730 ----------------NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 772
+ G Y A+ S D+ +++W S G+C+ L N + V
Sbjct: 292 RELAGLKPPAPRDTRAKSPGVYAATGSRDKTIKLWDALS---GQCLRTLVGHDNWIRALV 348
Query: 773 FHPTFPSLLVIGCYETLELWNMTENK-TLTLSAHDKLVSSL----------AASTVNG-- 819
FHP+ LL +T+++W++ + T T+ AH V+S+ VNG
Sbjct: 349 FHPSGKYLLSASDDKTIKVWDLANGRCTKTIEAHSHFVTSMTWGRAVGASGGIEKVNGDA 408
Query: 820 ---------MVASASHDKCVKIW 833
++A+ S D+ +K+W
Sbjct: 409 SSKEPRRINVLATGSVDQTIKVW 431
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Positively regulates the activity of the minus-end directed microtubule motor protein dynein. Plays a central role in positioning the mitotic spindle at the bud neck during cell division. Targets cytoplasmic dynein to microtubule plus ends, thereby promoting dynein-mediated microtubule sliding along the bud cortex and consequently the movement of the mitotic spindle to the bud neck. Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) |
| >sp|P0CS43|LIS1_CRYNB Nuclear distribution protein PAC1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=PAC1 PE=3 SV=1 | Back alignment and function description |
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Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 146/323 (45%), Gaps = 53/323 (16%)
Query: 560 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 619
F P LLA+ D LW E+ ++ TL+ HT+ + DV F P +AT S+D T++
Sbjct: 113 FHPTWTLLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPRGGLMATCSSDLTLK 172
Query: 620 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 679
+WDT N +++T GH +V S+ F P E L+ S + IR W +++G C F
Sbjct: 173 LWDTANQYTNVKTLHGHDHSVSSVRFMPDGETLV-SASRDKTIRVWQVSSGYCIKTFSGH 231
Query: 680 SGATQMRFQPRLGRILAAAIENYIS-ILDVETQVCRLKLQGHKNQVHSVCW--------- 729
+ + GR L +A + S I D T +++L+GH++ V +
Sbjct: 232 AEWVREAVPSEDGRWLVSASNDQTSRIWDFSTGETKMELRGHEHVVECAVFAPVNAYPAI 291
Query: 730 ----------------NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 772
+ G Y A+ S D+ +++W S G+C+ L N + V
Sbjct: 292 RELAGLKPPAPRDTRAKSPGVYAATGSRDKTIKLWDALS---GQCLRTLVGHDNWIRALV 348
Query: 773 FHPTFPSLLVIGCYETLELWNMTENK-TLTLSAHDKLVSSL----------AASTVNG-- 819
FHP+ LL +T+++W++ + T T+ AH V+S+ VNG
Sbjct: 349 FHPSGKYLLSASDDKTIKVWDLANGRCTKTIEAHSHFVTSMTWGRAVGASGGIEKVNGDA 408
Query: 820 ---------MVASASHDKCVKIW 833
++A+ S D+ +K+W
Sbjct: 409 SSKEPRRINVLATGSVDQTIKVW 431
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Positively regulates the activity of the minus-end directed microtubule motor protein dynein. Plays a central role in positioning the mitotic spindle at the bud neck during cell division. Targets cytoplasmic dynein to microtubule plus ends, thereby promoting dynein-mediated microtubule sliding along the bud cortex and consequently the movement of the mitotic spindle to the bud neck. Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643) |
| >sp|C4Q0P6|LIS1_SCHMA Lissencephaly-1 homolog OS=Schistosoma mansoni GN=Smp_129340 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 109 bits (273), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 133/291 (45%), Gaps = 23/291 (7%)
Query: 560 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 619
F P + + D +W E+ + TL+ HT + DV F PS LA+ SAD V+
Sbjct: 130 FHPHYNVFVSASEDASIKVWDYETGEFEHTLKGHTDSVQDVAFDPSGKFLASCSADMQVK 189
Query: 620 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 679
+WD ++T TGH V S+ F PS D L S + I+ W ++ G C F
Sbjct: 190 LWDFTIYQ-CIKTLTGHDHNVSSVAFLPSG-DFLVSASRDKTIKMWEVSTGYCTKTFIGH 247
Query: 680 SGATQ-MRFQPRLGRILAAAIENY-ISILDVETQVCRLKLQGHKNQVHSVCW-------- 729
+ + +R P G +LA+ ++ I I VE++ C++ L+GH++ V + W
Sbjct: 248 TEWIRSVRPSPE-GNLLASCSNDHTIRIWSVESRECQVVLRGHEHVVECIAWASHPQNLN 306
Query: 730 ------NTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 783
N+S ++ D +R W + G C+ L N VFHP LL
Sbjct: 307 SLPSSMNSSLLLVSGSRDRTIRFWDVNIGI---CLFVLIGHDNWVRQLVFHPHGRLLLSA 363
Query: 784 GCYETLELWNMTENKT-LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833
+T+ +W++ + TL+AH V+SL + + + S D+ + IW
Sbjct: 364 SDDKTIRVWDLKNRRCHKTLNAHSHFVTSLDVNRLAPYAITGSVDQTIHIW 414
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Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes. Schistosoma mansoni (taxid: 6183) |
| >sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 106 bits (264), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 128/280 (45%), Gaps = 9/280 (3%)
Query: 557 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 616
+ FSP G LLA G DK +W S TLE HT W+ V FSP + LA+ S D
Sbjct: 464 AVAFSPGGSLLAGGSGDKLIHVWDVASGDELHTLEGHTDWVRAVAFSPDGALLASGSDDA 523
Query: 617 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 676
TVR+WD + F GH+ V+ + F P ++ S + R W++ G+ V
Sbjct: 524 TVRLWDVAAAE-ERAVFEGHTHYVLDIAFSPDGS-MVASGSRDGTARLWNVATGTEHAVL 581
Query: 677 KCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 735
K + + F P + + + + I + DV T R LQ V S+ ++ G
Sbjct: 582 KGHTDYVYAVAFSPDGSMVASGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPDGSM 641
Query: 736 LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM 794
L SD V +W + S GE +H + + F P +LL G + T+ LW++
Sbjct: 642 LVHGSDSTVHLWDVAS---GEALHTFEGHTDWVRAVAFSPDG-ALLASGSDDRTIRLWDV 697
Query: 795 -TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833
+ + TL H + V S+A +ASAS D ++IW
Sbjct: 698 AAQEEHTTLEGHTEPVHSVAFHPEGTTLASASEDGTIRIW 737
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May play a regulatory role during the complex growth cycle and in secondary metabolite production. Thermomonospora curvata (taxid: 2020) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O22212|PRP4L_ARATH U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 134/281 (47%), Gaps = 11/281 (3%)
Query: 558 CHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSADR 616
C FS DGK+LAT LW T + L++H + TDV FSP LAT+SADR
Sbjct: 261 CSFSRDGKILATCSLSGVTKLWEMPQVTNTIAVLKDHKERATDVVFSPVDDCLATASADR 320
Query: 617 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 676
T ++W T+ L+TF GH + + FHPS + L + + R W IN G+ +
Sbjct: 321 TAKLWKTDGT--LLQTFEGHLDRLARVAFHPSGK-YLGTTSYDKTWRLWDINTGAELLLQ 377
Query: 677 KCQSGATQ-MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 735
+ S + + FQ + +++ + D+ T L QGH V SV ++ +G +
Sbjct: 378 EGHSRSVYGIAFQQDGALAASCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYH 437
Query: 736 LAS-VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET-LELWN 793
LAS D R+W + + ++ + N + P L Y+ + +W+
Sbjct: 438 LASGGEDNQCRIWDL---RMRKSLYIIPAHANLVSQVKYEPQEGYFLATASYDMKVNIWS 494
Query: 794 MTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833
+ + +L+ H+ V+SL + + +A+ SHD+ +K+W
Sbjct: 495 GRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLW 535
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|C3XVT5|LIS1_BRAFL Lissencephaly-1 homolog OS=Branchiostoma floridae GN=BRAFLDRAFT_59218 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 103 bits (256), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 123/267 (46%), Gaps = 29/267 (10%)
Query: 548 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 607
+ T V+ F GKLLA+ D LW ++F T+ H ++ V F P+
Sbjct: 144 LKGHTDAVQDVSFDQQGKLLASCSADMTIKLWDFQTFENIKTMHGHDHNVSSVHFMPNGD 203
Query: 608 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 667
L ++S D+T+++W+ Y ++TFTGH V ++ + LL SC N+ +R W +
Sbjct: 204 FLISASRDKTIKMWELAT-GYCVKTFTGHREWVRTVRVNQDG-SLLASCSNDQTVRVWVV 261
Query: 668 NNGSCAGVFK---------------CQSGATQMRFQPRLGR----ILAAAIENYISILDV 708
N C + C +++ + GR +L+ + + I + D+
Sbjct: 262 ANKECKAELREHEHVVECIAWAPESCNGHVSEVMGAEKKGRSGPFLLSGSRDKTIKMWDI 321
Query: 709 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECI--HELSCTG 765
T VC + L GH N V V W+ G+Y+ S SD+ +RVW + + + H+ CT
Sbjct: 322 STGVCIMTLVGHDNWVRGVVWHPGGKYIISASDDKTIRVWDYKNKRCQKTLEAHQHFCT- 380
Query: 766 NKFHSCVFHPTFPSLLVIGCYETLELW 792
S FH + P ++ +T+++W
Sbjct: 381 ----SIDFHRSAPYVITGSVDQTVKVW 403
|
Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes. Branchiostoma floridae (taxid: 7739) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 834 | ||||||
| 280967728 | 905 | LisH-SSDP-WD40 [Malus x domestica] | 0.980 | 0.903 | 0.704 | 0.0 | |
| 297738887 | 871 | unnamed protein product [Vitis vinifera] | 0.991 | 0.949 | 0.694 | 0.0 | |
| 225445366 | 878 | PREDICTED: transcriptional corepressor L | 0.991 | 0.941 | 0.689 | 0.0 | |
| 359484630 | 883 | PREDICTED: transcriptional corepressor L | 0.988 | 0.933 | 0.683 | 0.0 | |
| 356515484 | 892 | PREDICTED: transcriptional corepressor L | 0.994 | 0.929 | 0.644 | 0.0 | |
| 449441952 | 891 | PREDICTED: transcriptional corepressor L | 0.990 | 0.927 | 0.631 | 0.0 | |
| 357466351 | 941 | NAD(P)H-quinone oxidoreductase subunit [ | 0.989 | 0.876 | 0.603 | 0.0 | |
| 449441950 | 900 | PREDICTED: transcriptional corepressor L | 0.990 | 0.917 | 0.625 | 0.0 | |
| 449522548 | 900 | PREDICTED: transcriptional corepressor L | 0.990 | 0.917 | 0.625 | 0.0 | |
| 225430178 | 910 | PREDICTED: transcriptional corepressor L | 0.992 | 0.909 | 0.623 | 0.0 |
| >gi|280967728|gb|ACZ98534.1| LisH-SSDP-WD40 [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 1108 bits (2867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 607/862 (70%), Positives = 694/862 (80%), Gaps = 44/862 (5%)
Query: 9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN 68
D LDVYIYDYL+KRKLHASAKAFQ EGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN
Sbjct: 4 DHRLDVYIYDYLMKRKLHASAKAFQDEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN 63
Query: 69 EKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRR-- 126
EKHSE+AASYIE+QVIKAREQQQQQ+ Q Q Q QQ+ +Q+ Q+ Q+QQQQQ++
Sbjct: 64 EKHSEAAASYIETQVIKAREQQQQQKPQLQDQMQMQQLLLQRHAQQQQQQRQQQQQQQQP 123
Query: 127 -----------DSTQHLNDTGDD--LR--PGFAKAFTTKMYEDRLKKLPFQRDSLDDATI 171
D TQ N T +D LR P A + TKMYE+RLK LP QRD++DDA I
Sbjct: 124 QQQQQQQQQRRDGTQLHNGTANDSLLRQNPATANSMATKMYEERLK-LPPQRDAMDDAAI 182
Query: 172 KPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGVS----QQVQSRSQQPPLSTQ 227
K RL DNM+QLLDPNH +++KAA G QP GQ LHGT G QQ SRSQQ P S+Q
Sbjct: 183 KQRLGDNMSQLLDPNHVSMMKAATAGGQPPGQMLHGTPGGVLGNLQQPHSRSQQLPGSSQ 242
Query: 228 EVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQ 287
++K+E+ MNPRA EGSLIG HGSNQG N+TLKGWPLTG D+ RSG+LQQQ SL Q
Sbjct: 243 DIKSEV---MNPRAVAPEGSLIGTHGSNQGNNNLTLKGWPLTGFDRLRSGILQQQNSLMQ 299
Query: 288 ---PYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVST 344
PYNQL QQ ++ AQQNLASPS+NDL++R+++ML N+RNM L +DG +SV V
Sbjct: 300 SPQPYNQLLQQQQLMLAQQNLASPSSNDLDNRRMKMLLNNRNMVLGKDGQLSSVD--VPN 357
Query: 345 VGSAMQIISPGLPRGDNDLLIK------------QQQQLQHYSHHPLSSQQSQNSNPLLQ 392
VGS Q+ P LPRGD D+L+K QQ Q YS HPLS Q SQNS+ LQ
Sbjct: 358 VGSPAQVGCPVLPRGDADMLMKPTYQLQQQQMQSNNQQQQPYSQHPLSGQHSQNSSQHLQ 417
Query: 393 QQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPS 452
Q +KI+ GSM DGSM NT QGNDQASKNQ+GRKRKQ VSSSGPANSSGT NT GP+PS
Sbjct: 418 QHEKIMGSGSMAPDGSMPNTLQGNDQASKNQLGRKRKQPVSSSGPANSSGTVNTTGPSPS 477
Query: 453 SPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLD 512
SPS+PSTHT GDV+S PTL HNG SSKSLLMFGSDG+GS SAPN+LTD+DRFVDDGSL+
Sbjct: 478 SPSTPSTHTAGDVMSMPTLPHNGGSSKSLLMFGSDGLGSRASAPNKLTDVDRFVDDGSLE 537
Query: 513 DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH 572
DNVESFLS DDADPR RV R ++V KGF+F E QLIPAST+KVE CH S DGK LATGGH
Sbjct: 538 DNVESFLSHDDADPRGRVVRCSDVSKGFSFKEVQLIPASTNKVECCHLSSDGKSLATGGH 597
Query: 573 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 632
D+KAVLWCTE+++VKSTL+EH+QWITDVRFSPS+SRLATSSAD+TVRVWD +NP YSLRT
Sbjct: 598 DRKAVLWCTETYSVKSTLDEHSQWITDVRFSPSMSRLATSSADKTVRVWDADNPGYSLRT 657
Query: 633 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 692
FTGHS+TVMS+DFHPSKED LCSCDNNSEIRYWSI NGSCAGVFK GA+Q+RFQP G
Sbjct: 658 FTGHSSTVMSVDFHPSKEDFLCSCDNNSEIRYWSIKNGSCAGVFK--GGASQVRFQPCFG 715
Query: 693 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 752
R LAAA +N++SILDVETQVCRLKLQGHK+ VHSVCW+ SG+YLASVSD+LVRVW+IGS
Sbjct: 716 RNLAAAADNFVSILDVETQVCRLKLQGHKSAVHSVCWDPSGDYLASVSDDLVRVWTIGSS 775
Query: 753 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSL 812
KGE IHELSC+GNKF++CVFHPT+P+LLVIGCYETLELWNMTENKT+TL AHDKLVSSL
Sbjct: 776 CKGEFIHELSCSGNKFNTCVFHPTYPALLVIGCYETLELWNMTENKTMTLHAHDKLVSSL 835
Query: 813 AASTVNGMVASASHDKCVKIWK 834
A S+ G+VASASHDKCVK+WK
Sbjct: 836 AVSSATGLVASASHDKCVKLWK 857
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738887|emb|CBI28132.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1088 bits (2813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 610/878 (69%), Positives = 686/878 (78%), Gaps = 51/878 (5%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
DIFIARTNEKHSE+AASYIE+Q+IKARE QQQQQQQ Q+ QQ QQ Q Q Q+ QQ
Sbjct: 61 DIFIARTNEKHSEAAASYIETQLIKARELQQQQQQQQQQQQQQQQHQKPQQQQQQQQQQM 120
Query: 121 QQQQRR----------------DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDR 155
Q QQ D TQ LN +G+ L P A TKMYE+R
Sbjct: 121 QMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEER 180
Query: 156 LKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS-- 212
LK LP QRD LDDA +K R DNM QLL+PNHA+LLK+AA+ QP GQTLHG G+S
Sbjct: 181 LK-LPLQRDPLDDAAMKQRFGDNMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGN 238
Query: 213 -QQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGL 271
QQVQSR+QQ +S+ ++K+EMNP MNPRAAG EGSLIGVHGSNQG N+TLKGWPLTGL
Sbjct: 239 LQQVQSRNQQLQVSS-DIKSEMNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTGL 297
Query: 272 DQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNM 327
DQ RSG+LQQ KSL QP + QQL+LQAQQNLASPSA+DLE RKLRML NSRN
Sbjct: 298 DQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN- 356
Query: 328 GLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKQQQQLQHYSH--------HPL 379
L +DG N+VGD+V+ VGS MQ+ P LPRGD D+LIK QQQ S+ HPL
Sbjct: 357 SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIKLQQQQLQNSNQQQQQYLQHPL 416
Query: 380 SSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPA 438
SSQQSQ+SN LL QQDK++ GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ VSSSGPA
Sbjct: 417 SSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQPVSSSGPA 476
Query: 439 NSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPN 497
NSSGT NT GP+PSS S + HTPGDVIS PTL HNG SSKSLLM+GSDGMG+ TSAPN
Sbjct: 477 NSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMGTHTSAPN 536
Query: 498 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 557
QL D+DRFVDDGSLDDNVESFL+ DD DPRD VGRS + KGF+F+E + I ASTSKVE
Sbjct: 537 QLADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSFSEVRCITASTSKVEC 596
Query: 558 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 617
CHFS DGKLLATGG DKKAVLWCTESFT KS LEEH+Q ITD+RFSPS+ RLATSSAD+T
Sbjct: 597 CHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRFSPSMPRLATSSADKT 656
Query: 618 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 677
VRVWD +NP YSLRTFTGHST V SLDFHP+K+DL+CSCD N EIRYWSI NGSC VFK
Sbjct: 657 VRVWDVDNPVYSLRTFTGHSTNVTSLDFHPNKDDLICSCDGNGEIRYWSIPNGSCTRVFK 716
Query: 678 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 737
G MRFQPR GR LAAA E +SILDVETQ CR KLQGHKN V SVCW++SG YLA
Sbjct: 717 --GGTNHMRFQPRHGRYLAAAAEGVVSILDVETQACRQKLQGHKNHV-SVCWDSSGSYLA 773
Query: 738 SVSDELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796
+VS++LV+VW++GSG K ECIHEL +GNKF+SC FHPT+ SLLVIGCY++LELWNMTE
Sbjct: 774 TVSEDLVKVWTVGSGGKAAECIHELHYSGNKFNSCAFHPTYTSLLVIGCYQSLELWNMTE 833
Query: 797 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834
NKT+TL AHDKL+SSLA S V G+VASASHD CVK+WK
Sbjct: 834 NKTMTLPAHDKLISSLAVSNVTGLVASASHDNCVKLWK 871
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445366|ref|XP_002284908.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1083 bits (2802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 610/885 (68%), Positives = 686/885 (77%), Gaps = 58/885 (6%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
DIFIARTNEKHSE+AASYIE+Q+IKARE QQQQQQQ Q+ QQ QQ Q Q Q+ QQ
Sbjct: 61 DIFIARTNEKHSEAAASYIETQLIKARELQQQQQQQQQQQQQQQQHQKPQQQQQQQQQQM 120
Query: 121 QQQQRR----------------DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDR 155
Q QQ D TQ LN +G+ L P A TKMYE+R
Sbjct: 121 QMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEER 180
Query: 156 LKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS-- 212
LK LP QRD LDDA +K R DNM QLL+PNHA+LLK+AA+ QP GQTLHG G+S
Sbjct: 181 LK-LPLQRDPLDDAAMK-RFGDNMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGN 237
Query: 213 -QQVQSRSQQPPLSTQ-EVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTG 270
QQVQSR+QQ +S+ ++K+EMNP MNPRAAG EGSLIGVHGSNQG N+TLKGWPLTG
Sbjct: 238 LQQVQSRNQQLQVSSACDIKSEMNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTG 297
Query: 271 LDQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRN 326
LDQ RSG+LQQ KSL QP + QQL+LQAQQNLASPSA+DLE RKLRML NSRN
Sbjct: 298 LDQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN 357
Query: 327 MGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKQ--------------QQQLQ 372
L +DG N+VGD+V+ VGS MQ+ P LPRGD D+LIK+ QQ Q
Sbjct: 358 -SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIKRLNVSQLQQQQLQNSNQQQQ 416
Query: 373 HYSHHPLSSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQA 431
Y HPLSSQQSQ+SN LL QQDK++ GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ
Sbjct: 417 QYLQHPLSSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQP 476
Query: 432 VSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMG 490
VSSSGPANSSGT NT GP+PSS S + HTPGDVIS PTL HNG SSKSLLM+GSDGMG
Sbjct: 477 VSSSGPANSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMG 536
Query: 491 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 550
+ TSAPNQL D+DRFVDDGSLDDNVESFL+ DD DPRD VGRS + KGF+F+E + I A
Sbjct: 537 THTSAPNQLADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSFSEVRCITA 596
Query: 551 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 610
STSKVE CHFS DGKLLATGG DKKAVLWCTESFT KS LEEH+Q ITD+RFSPS+ RLA
Sbjct: 597 STSKVECCHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRFSPSMPRLA 656
Query: 611 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 670
TSSAD+TVRVWD +NP YSLRTFTGHST V SLDFHP+K+DL+CSCD N EIRYWSI NG
Sbjct: 657 TSSADKTVRVWDVDNPVYSLRTFTGHSTNVTSLDFHPNKDDLICSCDGNGEIRYWSIPNG 716
Query: 671 SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 730
SC VFK G MRFQPR GR LAAA E +SILDVETQ CR KLQGHKN V SVCW+
Sbjct: 717 SCTRVFK--GGTNHMRFQPRHGRYLAAAAEGVVSILDVETQACRQKLQGHKNHV-SVCWD 773
Query: 731 TSGEYLASVSDELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 789
+SG YLA+VS++LV+VW++GSG K ECIHEL +GNKF+SC FHPT+ SLLVIGCY++L
Sbjct: 774 SSGSYLATVSEDLVKVWTVGSGGKAAECIHELHYSGNKFNSCAFHPTYTSLLVIGCYQSL 833
Query: 790 ELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834
ELWNMTENKT+TL AHDKL+SSLA S V G+VASASHD CVK+WK
Sbjct: 834 ELWNMTENKTMTLPAHDKLISSLAVSNVTGLVASASHDNCVKLWK 878
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484630|ref|XP_003633134.1| PREDICTED: transcriptional corepressor LEUNIG-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1080 bits (2793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 610/893 (68%), Positives = 684/893 (76%), Gaps = 69/893 (7%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
DIFIARTNEKHSE+AASYIE+Q+IKARE QQQQQQQ Q+ QQ QQ Q Q Q+ QQ
Sbjct: 61 DIFIARTNEKHSEAAASYIETQLIKARELQQQQQQQQQQQQQQQQHQKPQQQQQQQQQQM 120
Query: 121 QQQQRR----------------DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDR 155
Q QQ D TQ LN +G+ L P A TKMYE+R
Sbjct: 121 QMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEER 180
Query: 156 LKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS-- 212
LK LP QRD LDDA +K R DNM QLL+PNHA+LLK+AA+ QP GQTLHG G+S
Sbjct: 181 LK-LPLQRDPLDDAAMKQRFGDNMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGN 238
Query: 213 -QQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGL 271
QQVQSR+QQ Q++K+EMNP MNPRAAG EGSLIGVHGSNQG N+TLKGWPLTGL
Sbjct: 239 LQQVQSRNQQ----LQDIKSEMNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTGL 294
Query: 272 DQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNM 327
DQ RSG+LQQ KSL QP + QQL+LQAQQNLASPSA+DLE RKLRML NSRN
Sbjct: 295 DQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN- 353
Query: 328 GLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKQ--------------QQQLQH 373
L +DG N+VGD+V+ VGS MQ+ P LPRGD D+LIK+ QQ Q
Sbjct: 354 SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIKRLNVSQLQQQQLQNSNQQQQQ 413
Query: 374 YSHHPLSSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAV 432
Y HPLSSQQSQ+SN LL QQDK++ GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ V
Sbjct: 414 YLQHPLSSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQPV 473
Query: 433 SSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGS 491
SSSGPANSSGT NT GP+PSS S + HTPGDVIS PTL HNG SSKSLLM+GSDGMG+
Sbjct: 474 SSSGPANSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMGT 533
Query: 492 LTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 542
TSAPNQL D+DRFVDDGSLDDNVESFL+ DD DPRD VGRS + KGF+F
Sbjct: 534 HTSAPNQLWNNRYNNLQADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSF 593
Query: 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 602
+E + I ASTSKVE CHFS DGKLLATGG DKKAVLWCTESFT KS LEEH+Q ITD+RF
Sbjct: 594 SEVRCITASTSKVECCHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRF 653
Query: 603 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 662
SPS+ RLATSSAD+TVRVWD +NP YSLRTFTGHST V SLDFHP+K+DL+CSCD N EI
Sbjct: 654 SPSMPRLATSSADKTVRVWDVDNPVYSLRTFTGHSTNVTSLDFHPNKDDLICSCDGNGEI 713
Query: 663 RYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 722
RYWSI NGSC VFK G MRFQPR GR LAAA E +SILDVETQ CR KLQGHKN
Sbjct: 714 RYWSIPNGSCTRVFK--GGTNHMRFQPRHGRYLAAAAEGVVSILDVETQACRQKLQGHKN 771
Query: 723 QVHSVCWNTSGEYLASVSDELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLL 781
V SVCW++SG YLA+VS++LV+VW++GSG K ECIHEL +GNKF+SC FHPT+ SLL
Sbjct: 772 HV-SVCWDSSGSYLATVSEDLVKVWTVGSGGKAAECIHELHYSGNKFNSCAFHPTYTSLL 830
Query: 782 VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834
VIGCY++LELWNMTENKT+TL AHDKL+SSLA S V G+VASASHD CVK+WK
Sbjct: 831 VIGCYQSLELWNMTENKTMTLPAHDKLISSLAVSNVTGLVASASHDNCVKLWK 883
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515484|ref|XP_003526430.1| PREDICTED: transcriptional corepressor LEUNIG-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1058 bits (2735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/897 (64%), Positives = 672/897 (74%), Gaps = 68/897 (7%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DYL+KR L ASA+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
DIFIARTNEKHSE AASYIE+Q+IKAREQQQQQ QQ +PQQ Q Q + Q Q+
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQNQQQPQPQQSQHQQQHMQMQQLLLQRA 120
Query: 121 QQQQR------------------------RDSTQHLNDTGDDL--RPGFAKAFTTKMYED 154
QQQQ+ RD LN + + L PG A A TKMYE+
Sbjct: 121 QQQQQQQQQQQQQPQSQQQQSQPQQQQQSRDRPHLLNGSANGLVGNPGTANALATKMYEE 180
Query: 155 RLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHG-VSQ 213
RLK LP QRDSLDDA K R +NM QLLDPNHA +LK+AA QPSGQ LHG G +S
Sbjct: 181 RLK-LPLQRDSLDDAATKQRFGENMGQLLDPNHAPILKSAAAPGQPSGQVLHGAAGGMSP 239
Query: 214 QVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQ 273
QVQ+R+QQ P ST ++K E++P +NPRA G EGSL+G+ GSN G+ N+TLKGWPLTGL+Q
Sbjct: 240 QVQARTQQLPGSTLDIKGEISPVLNPRAVGPEGSLMGMPGSNPGSNNLTLKGWPLTGLEQ 299
Query: 274 FRSGLLQQQKSLTQ---PYNQLQL------QQLMLQAQQNLASPSANDLESRKLRMLHNS 324
RSGLLQQQK Q P++QLQ+ QQLML AQQNLASPSA++ ESR+LRML N+
Sbjct: 300 LRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQLML-AQQNLASPSASE-ESRRLRMLLNN 357
Query: 325 RNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKQQQQLQHYSH-------- 376
RN+GL +DG SN VGD+VS VGS +Q P PRGD D+L+K +
Sbjct: 358 RNIGLNKDGLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLVKLKLAQLQQQQQQQSSTNA 417
Query: 377 -------HPLSSQQSQNSNPLLQQQDKILAGG--SMTMDGSMSNTFQGNDQASKNQIGRK 427
H LS+QQSQ SN + QQDK+ GG S+T+DGSMSN+F+GNDQ SKNQIGRK
Sbjct: 418 QQQQLQQHTLSNQQSQTSNHSMHQQDKVGGGGGGSVTVDGSMSNSFRGNDQVSKNQIGRK 477
Query: 428 RKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGS 486
RKQ SSSGPANSSGTANT GP+PSS S + HTPGDVIS P L H+G+SSK L+MF +
Sbjct: 478 RKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFST 537
Query: 487 DGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 537
DG G+LTS NQL D+DRFV+DGSLD+NVESFLS DD DPRD VGR +V
Sbjct: 538 DGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVS 597
Query: 538 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI 597
KGFTF++ + ASTSKV CHFS DGKLLA+GGHDKK VLW T+S K+TLEEH+ I
Sbjct: 598 KGFTFSDVNSVRASTSKVSCCHFSSDGKLLASGGHDKKVVLWYTDSLKQKATLEEHSSLI 657
Query: 598 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 657
TDVRFSPS+ RLATSS D+TVRVWD +NP YSLRTFTGHST+VMSLDFHP+K+DL+CSCD
Sbjct: 658 TDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCD 717
Query: 658 NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 717
+ EIRYWSINNGSCA V K G TQMRFQPRLGR LAAA EN +SI DVETQVCR L
Sbjct: 718 GDGEIRYWSINNGSCARVSK--GGTTQMRFQPRLGRYLAAAAENIVSIFDVETQVCRYSL 775
Query: 718 QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 777
+GH V VCW+ SGE LASVS++ VRVW++GSGS GEC+HELSC GNKFH VFHPT+
Sbjct: 776 KGHTKPVVCVCWDPSGELLASVSEDSVRVWTLGSGSDGECVHELSCNGNKFHKSVFHPTY 835
Query: 778 PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834
PSLLVIGCY++LELWNM+ENKT+TLSAHD L++SLA STVNG+VASASHDK +K+WK
Sbjct: 836 PSLLVIGCYQSLELWNMSENKTMTLSAHDGLITSLAVSTVNGLVASASHDKFLKLWK 892
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441952|ref|XP_004138746.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1038 bits (2684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/899 (63%), Positives = 663/899 (73%), Gaps = 73/899 (8%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DYL+KR L A+A+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQ--LLLQRHAQ 118
DIFIARTNEKHS+ AASYIE+Q+IKAREQQQ QQQQ Q+ Q QQ LL+QRHAQ
Sbjct: 61 DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQ 120
Query: 119 QQQQQQ------------------------RRDSTQHLNDTGDDL---------RPGFAK 145
QQQQQQ RRD Q LN + + PG
Sbjct: 121 QQQQQQQQQQHQQQQQPQQQQQQSQQQQQQRRDGAQLLNGSSNGFVGNDPLMRQNPGSVN 180
Query: 146 AFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTL 205
A TKMYEDRLK LP QRDSLDD +K R DN+ QLLDPNHA++LK+AA SQ SGQ L
Sbjct: 181 ALATKMYEDRLK-LPLQRDSLDDGAMKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVL 239
Query: 206 HG-THGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLK 264
HG T G+S QVQ RSQQ P ST ++KTE+NP +NPRAAG EGSL+G+ GSN G N+TLK
Sbjct: 240 HGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLK 299
Query: 265 GWPLTGLDQFRSGLLQQQKSLTQP---YNQLQL------QQLMLQAQQNLASPSANDLES 315
GWPLTGLDQ RSG+LQQQK Q + QLQ+ QQLML AQQNL SPS ND +
Sbjct: 300 GWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQLML-AQQNLTSPSVND-DG 357
Query: 316 RKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDN-DLLIKQQQ----- 369
R+LRML N+R +A+DG SNSVGD+V VGS +Q SP LPRGDN D+++K +
Sbjct: 358 RRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQLQQ 414
Query: 370 ------------QLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGND 417
Q Q H LS+QQSQ+SN + QQ+KI GS+TMDGSMSN+F+GND
Sbjct: 415 QQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGND 474
Query: 418 QASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGA 476
Q SKNQ GRKRKQ VSSSGPANSSGTANT GP+PSS S + HTPGD IS P L H+G+
Sbjct: 475 QVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGS 534
Query: 477 SSKSL-LMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 535
SSK L +MF SDG G+ TS NQL DMDR+V+DGSLDDNV+SFLS DD DPRD VGR +
Sbjct: 535 SSKPLTMMFNSDGTGTFTSPSNQLADMDRYVEDGSLDDNVDSFLSHDDGDPRDPVGRCMD 594
Query: 536 VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ 595
KGFTFTE + ASTSKV SCHFS DGKLL +GGHDKKAVLW TE+ K++LEEH
Sbjct: 595 GSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKPKTSLEEHAA 654
Query: 596 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 655
+TDVRFSPS+ RLATSS DRTVRVWD +N YSLRTFTGHS +VMSLDFHP K+D +CS
Sbjct: 655 IVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFHPKKDDFICS 714
Query: 656 CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL 715
CD + EIRYW+I NGSCA VFK +G MRFQPRLGR +A ++N ++I DVETQ
Sbjct: 715 CDGDGEIRYWNITNGSCAAVFKGGTGP--MRFQPRLGRYFSAVVDNIVTIFDVETQARVH 772
Query: 716 KLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 775
L+GH V S+CW+ SGE+LASVS++ VRVW++ SG++GE IHELSC GNKFHSCVFHP
Sbjct: 773 SLRGHTKTVQSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHELSCNGNKFHSCVFHP 832
Query: 776 TFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834
T+ +LLVIGCYE+LELWN TENKT+TLSAH+ LVSSLA S +G+VASASHD+ +K+WK
Sbjct: 833 TYSTLLVIGCYESLELWNTTENKTMTLSAHEGLVSSLAVSAASGLVASASHDRFIKLWK 891
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357466351|ref|XP_003603460.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula] gi|355492508|gb|AES73711.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1033 bits (2671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 573/950 (60%), Positives = 672/950 (70%), Gaps = 125/950 (13%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DYL+KR L ASA+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQ------------------------- 95
DIFIARTNEKHSE AASYIE+Q+IKAREQQQQQQQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQPQPQQSQHAQQQQQQHMQMQQ 120
Query: 96 ----QHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDL--RPGFAKAFTT 149
+H + QQ QQ QQ Q Q QQQQ RD T LN + + L P A A T
Sbjct: 121 LLMQRHAQQQQQQQQHQQQPQSQPQQPQPQQQQNRDRTHLLNGSANGLAGNPATANAIAT 180
Query: 150 KMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTH 209
KMYE+RLK P QRDSLDDA +K R +NM QLLDPNHA++LK+AA G QPSGQ LHGT
Sbjct: 181 KMYEERLKGPP-QRDSLDDAAMKQRFGENMGQLLDPNHASILKSAAAGGQPSGQVLHGTA 239
Query: 210 G-VSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPL 268
G +S QVQ+RSQQ P ST ++K+E+NP +NPRAAG EGSL+G+ GSNQG N+TLKGWPL
Sbjct: 240 GGMSPQVQARSQQLPGSTTDIKSEINPVLNPRAAGPEGSLLGISGSNQGNNNLTLKGWPL 299
Query: 269 TGLDQFRSGLLQQQKSLTQ---PYNQLQL------QQLMLQAQQNLASPSANDLESRKLR 319
TGL+Q RSGLLQQQK Q P++QLQ+ QQLML AQQ+LASPSA++ ESR+LR
Sbjct: 300 TGLEQLRSGLLQQQKPYMQAPQPFHQLQMLTPQHQQQLML-AQQSLASPSASE-ESRRLR 357
Query: 320 MLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKQQ----------- 368
ML N+RN+GL +DG SN GD++S VGS + P PRGD D+L+K +
Sbjct: 358 MLLNNRNIGLNKDGLSNPGGDMLSNVGSPLHGGGPPFPRGDTDMLMKLKLAQLQQQQQQQ 417
Query: 369 ---------QQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGG-SMTMDGSMSNTFQGNDQ 418
Q Q H LS+QQSQ SN + QQDK+ GG S+TMDGSMSN+++GNDQ
Sbjct: 418 QHQQQSSINAQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTMDGSMSNSYRGNDQ 477
Query: 419 --------------------------------------------ASKNQIGRKRKQAVSS 434
SKNQ+GRKRKQ VSS
Sbjct: 478 IKVQPTEQSEEVLMFCGIPPFACFWSKDEILNDGWLHSPIFAIVVSKNQMGRKRKQPVSS 537
Query: 435 SGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLT 493
SGPANSSGTANT GP+PSS S + HTPGD +S P L HN +SSK L+MF +DG G+LT
Sbjct: 538 SGPANSSGTANTAGPSPSSAPSTPSTHTPGDAVSMPALPHNSSSSKPLMMFSTDGTGTLT 597
Query: 494 SAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTE 544
S NQL D+DRFVDDGSLDDNVESFLS DD DPRD VGR +V KGFTF++
Sbjct: 598 SPSNQLWDDKDLELKADVDRFVDDGSLDDNVESFLSQDDTDPRDPVGRCMDVSKGFTFSD 657
Query: 545 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 604
+ AS+SK+ CHFS DGKLLA+GGHDKKAV+W +S K+ LEEH+ ITDVRFS
Sbjct: 658 VNSVRASSSKIACCHFSSDGKLLASGGHDKKAVIWYADSLKQKAILEEHSALITDVRFSA 717
Query: 605 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 664
S+ RLATSS D+TVRVWD +NP YSLRTFTGHST+VMSLDFHP+K+DL+CSCD + EIRY
Sbjct: 718 SMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRY 777
Query: 665 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV 724
WSINNGSC V K G TQMRFQPRLGR LAAA EN +SILDVETQ CR L+GH +
Sbjct: 778 WSINNGSCVRVSK--GGTTQMRFQPRLGRYLAAAAENIVSILDVETQACRYSLKGHTKTI 835
Query: 725 HSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 784
SVCW+ SGE LASVS++ VR+W++ +GEC+HELSC G+KFHSCVFHPTFPSLLVIG
Sbjct: 836 DSVCWDPSGELLASVSEDSVRIWTL----EGECVHELSCNGSKFHSCVFHPTFPSLLVIG 891
Query: 785 CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834
CY++LELWNM ENKT+TLSAHD L+++LA STVNG+VASASHDK +K+WK
Sbjct: 892 CYQSLELWNMAENKTMTLSAHDGLITALAVSTVNGLVASASHDKFIKLWK 941
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441950|ref|XP_004138745.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1030 bits (2662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/908 (62%), Positives = 663/908 (73%), Gaps = 82/908 (9%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DYL+KR L A+A+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQ--LLLQRHAQ 118
DIFIARTNEKHS+ AASYIE+Q+IKAREQQQ QQQQ Q+ Q QQ LL+QRHAQ
Sbjct: 61 DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQ 120
Query: 119 QQQQQQ------------------------RRDSTQHLNDTGDDL---------RPGFAK 145
QQQQQQ RRD Q LN + + PG
Sbjct: 121 QQQQQQQQQQHQQQQQPQQQQQQSQQQQQQRRDGAQLLNGSSNGFVGNDPLMRQNPGSVN 180
Query: 146 AFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTL 205
A TKMYEDRLK LP QRDSLDD +K R DN+ QLLDPNHA++LK+AA SQ SGQ L
Sbjct: 181 ALATKMYEDRLK-LPLQRDSLDDGAMKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVL 239
Query: 206 HG-THGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLK 264
HG T G+S QVQ RSQQ P ST ++KTE+NP +NPRAAG EGSL+G+ GSN G N+TLK
Sbjct: 240 HGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLK 299
Query: 265 GWPLTGLDQFRSGLLQQQKSLTQP---YNQLQL------QQLMLQAQQNLASPSANDLES 315
GWPLTGLDQ RSG+LQQQK Q + QLQ+ QQLML AQQNL SPS ND +
Sbjct: 300 GWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQLML-AQQNLTSPSVND-DG 357
Query: 316 RKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDN-DLLIKQQQ----- 369
R+LRML N+R +A+DG SNSVGD+V VGS +Q SP LPRGDN D+++K +
Sbjct: 358 RRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQLQQ 414
Query: 370 ------------QLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGND 417
Q Q H LS+QQSQ+SN + QQ+KI GS+TMDGSMSN+F+GND
Sbjct: 415 QQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGND 474
Query: 418 QASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGA 476
Q SKNQ GRKRKQ VSSSGPANSSGTANT GP+PSS S + HTPGD IS P L H+G+
Sbjct: 475 QVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGS 534
Query: 477 SSKSL-LMFGSDGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADP 526
SSK L +MF SDG G+ TS NQL DMDR+V+DGSLDDNV+SFLS DD DP
Sbjct: 535 SSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQADMDRYVEDGSLDDNVDSFLSHDDGDP 594
Query: 527 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 586
RD VGR + KGFTFTE + ASTSKV SCHFS DGKLL +GGHDKKAVLW TE+
Sbjct: 595 RDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKP 654
Query: 587 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 646
K++LEEH +TDVRFSPS+ RLATSS DRTVRVWD +N YSLRTFTGHS +VMSLDFH
Sbjct: 655 KTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFH 714
Query: 647 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL 706
P K+D +CSCD + EIRYW+I NGSCA VFK +G MRFQPRLGR +A ++N ++I
Sbjct: 715 PKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGP--MRFQPRLGRYFSAVVDNIVTIF 772
Query: 707 DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGN 766
DVETQ L+GH V S+CW+ SGE+LASVS++ VRVW++ SG++GE IHELSC GN
Sbjct: 773 DVETQARVHSLRGHTKTVQSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHELSCNGN 832
Query: 767 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 826
KFHSCVFHPT+ +LLVIGCYE+LELWN TENKT+TLSAH+ LVSSLA S +G+VASASH
Sbjct: 833 KFHSCVFHPTYSTLLVIGCYESLELWNTTENKTMTLSAHEGLVSSLAVSAASGLVASASH 892
Query: 827 DKCVKIWK 834
D+ +K+WK
Sbjct: 893 DRFIKLWK 900
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449522548|ref|XP_004168288.1| PREDICTED: transcriptional corepressor LEUNIG-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1029 bits (2660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/908 (62%), Positives = 663/908 (73%), Gaps = 82/908 (9%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DYL+KR L A+A+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQ--LLLQRHAQ 118
DIFIARTNEKHS+ AASYIE+Q+IKAREQQQ QQQQ Q+ Q QQ LL+QRHAQ
Sbjct: 61 DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQ 120
Query: 119 QQQQQQ------------------------RRDSTQHLNDTGDDL---------RPGFAK 145
QQQQQQ RRD Q LN + + PG
Sbjct: 121 QQQQQQQQQQHQQQQQPQQQQQQSQQQQQQRRDGAQLLNGSSNGFVGNDPLMRQNPGSVN 180
Query: 146 AFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTL 205
A TKMYEDRLK LP QRDSLDD +K R DN+ QLLDPNHA++LK+AA SQ SGQ L
Sbjct: 181 ALATKMYEDRLK-LPLQRDSLDDGAMKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVL 239
Query: 206 HG-THGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLK 264
HG T G+S QVQ RSQQ P ST ++KTE+NP +NPRAAG EGSL+G+ GSN G N+TLK
Sbjct: 240 HGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLK 299
Query: 265 GWPLTGLDQFRSGLLQQQKSLTQP---YNQLQL------QQLMLQAQQNLASPSANDLES 315
GWPLTGLDQ RSG+LQQQK Q + QLQ+ QQLML AQQNL SPS ND +
Sbjct: 300 GWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQLML-AQQNLTSPSVND-DG 357
Query: 316 RKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDN-DLLIKQQQ----- 369
R+LRML N+R +A+DG SNSVGD+V VGS +Q SP LPRGDN D+++K +
Sbjct: 358 RRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQLQQ 414
Query: 370 ------------QLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGND 417
Q Q H LS+QQSQ+SN + QQ+KI GS+TMDGSMSN+F+GND
Sbjct: 415 QQQQQQSSSQQQQQQQLQQHTLSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGND 474
Query: 418 QASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGA 476
Q SKNQ GRKRKQ VSSSGPANSSGTANT GP+PSS S + HTPGD IS P L H+G+
Sbjct: 475 QVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGS 534
Query: 477 SSKSL-LMFGSDGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADP 526
SSK L +MF SDG G+ TS NQL DMDR+V+DGSLDDNV+SFLS DD DP
Sbjct: 535 SSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQADMDRYVEDGSLDDNVDSFLSHDDGDP 594
Query: 527 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 586
RD VGR + KGFTFTE + ASTSKV SCHFS DGKLL +GGHDKKAVLW TE+
Sbjct: 595 RDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKP 654
Query: 587 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 646
K++LEEH +TDVRFSPS+ RLATSS DRTVRVWD +N YSLRTFTGHS +VMSLDFH
Sbjct: 655 KTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFH 714
Query: 647 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL 706
P K+D +CSCD + EIRYW+I NGSCA VFK +G MRFQPRLGR +A ++N ++I
Sbjct: 715 PKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGP--MRFQPRLGRYFSAVVDNIVTIF 772
Query: 707 DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGN 766
DVETQ L+GH V S+CW+ SGE+LASVS++ VRVW++ SG++GE IHELSC GN
Sbjct: 773 DVETQARVHSLRGHTKTVQSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHELSCNGN 832
Query: 767 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 826
KFHSCVFHPT+ +LLVIGCYE+LELWN TENKT+TLSAH+ LVSSLA S +G+VASASH
Sbjct: 833 KFHSCVFHPTYSTLLVIGCYESLELWNTTENKTMTLSAHEGLVSSLAVSAASGLVASASH 892
Query: 827 DKCVKIWK 834
D+ +K+WK
Sbjct: 893 DRFIKLWK 900
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430178|ref|XP_002284900.1| PREDICTED: transcriptional corepressor LEUNIG-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1012 bits (2617), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/916 (62%), Positives = 665/916 (72%), Gaps = 88/916 (9%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DYL+KR L ASA+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQ------ 114
DIFIARTNEKHSE AASYIE+Q+IKAREQQQQQQQQ Q+PQQ Q Q QQ Q
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQPQQPQHQQQQQQQQQLQMQQL 120
Query: 115 ---RHAQQQQQQQ----------------------RRDSTQHLNDTGDDL---------R 140
RHAQQQQQQQ RRD LN T + L
Sbjct: 121 LLQRHAQQQQQQQQQQQQQQQQQQQQQQQQPQQQQRRDGAHLLNGTTNGLVGNDPLMRTN 180
Query: 141 PGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQP 200
P A A TKMYE+RLK LP QRDSLDDAT+K R S+N+ QLLDPNHAT+LK+AA QP
Sbjct: 181 PATANALATKMYEERLK-LPIQRDSLDDATMKQRFSENVGQLLDPNHATILKSAAAAGQP 239
Query: 201 SGQTLH-GTHGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAG 259
SGQ LH G+S QVQ+R+QQ P ST ++K+EMNP +NPRA G EGSLIG+ GSNQG
Sbjct: 240 SGQVLHVSAGGMSPQVQARNQQLPGSTPDIKSEMNPVLNPRAGGPEGSLIGIPGSNQGGN 299
Query: 260 NVTLKGWPLTGLDQFRSGLLQQQKSLTQ----PYNQLQLQQLMLQAQQNL----ASPSAN 311
N+TLKGWPLTGLDQ RSGLLQQ K Q P++QLQ+ Q SP ++
Sbjct: 300 NLTLKGWPLTGLDQLRSGLLQQPKPFIQAAPQPFHQLQMLPQHQQQLLLAQQSLTSPPSD 359
Query: 312 DLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKQQQQL 371
ESR+LRML N+RNM L +DG SNS+GD V VGS +Q LPRGD ++L+K +
Sbjct: 360 --ESRRLRMLLNNRNMNLGKDGPSNSIGD-VPNVGSPLQPGCAVLPRGDTEMLMKLKMAQ 416
Query: 372 QHYSHHPLSSQQSQNS-----------------------NPLLQQQDKILAGGSMTMDGS 408
H+ QQ ++ N + QQDK+ GS+T+DGS
Sbjct: 417 MHHQQQQQQQQQQNSNQPQQQQQQQLQQHALSSQQSQSSNHNMHQQDKMGGAGSITVDGS 476
Query: 409 MSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVIS 467
MSN+F+GNDQASKNQ GRKRKQ VSSSGPANSSGTANT GP+PSS S + HTPGDVIS
Sbjct: 477 MSNSFRGNDQASKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVIS 536
Query: 468 RPTLQHNGASSKSLLMFGSDGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESF 518
P L H+G+SSK L+MF +DG G+LTS NQL DMDRFV+DGSLDDNVESF
Sbjct: 537 MPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADMDRFVEDGSLDDNVESF 596
Query: 519 LSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 578
LS DD DPRD VGR +V KGFTFTE + AS SKV CHFS DGKLLA+GGHDKKAVL
Sbjct: 597 LSHDDTDPRDTVGRCMDVSKGFTFTEVSSVRASASKVICCHFSSDGKLLASGGHDKKAVL 656
Query: 579 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 638
W T++ K+TLEEH+ ITDVRFSPS+ RLATSS D+TVRVWD ++ YSLRTFTGHS
Sbjct: 657 WYTDTLKTKTTLEEHSMLITDVRFSPSMPRLATSSFDKTVRVWDADSTSYSLRTFTGHSA 716
Query: 639 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 698
+VMSLDFHP+++DL+CSCD + EIRYW+I NGSCA VFK G QMRFQPR GR LAAA
Sbjct: 717 SVMSLDFHPNQDDLICSCDGDGEIRYWNIKNGSCARVFK--GGTAQMRFQPRHGRYLAAA 774
Query: 699 IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECI 758
EN +SILDVETQ CR LQGH +HSVCW+ SGE+LASVS++ VRVW++GSG++GEC+
Sbjct: 775 AENVVSILDVETQACRHSLQGHTKPIHSVCWDPSGEFLASVSEDSVRVWTLGSGNEGECV 834
Query: 759 HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVN 818
HELSC GNKFHSCVFHPT+ SLLVIGCY++LELWNM+ENKT+TLSAHD L+++LA STV+
Sbjct: 835 HELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMSENKTMTLSAHDGLIAALAVSTVS 894
Query: 819 GMVASASHDKCVKIWK 834
G+VASASHDK VK+WK
Sbjct: 895 GLVASASHDKIVKLWK 910
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 834 | ||||||
| UNIPROTKB|Q5M786 | 334 | wdr5 "WD repeat-containing pro | 0.353 | 0.883 | 0.277 | 4.1e-26 | |
| DICTYBASE|DDB_G0287273 | 335 | wdr5 "WD40 repeat-containing p | 0.328 | 0.817 | 0.274 | 8.6e-26 | |
| ASPGD|ASPL0000006214 | 434 | AN6385 [Emericella nidulans (t | 0.322 | 0.619 | 0.326 | 1.2e-25 | |
| UNIPROTKB|G3N3E5 | 308 | WDR5 "WD repeat-containing pro | 0.330 | 0.896 | 0.282 | 8.1e-25 | |
| UNIPROTKB|Q2KIG2 | 334 | WDR5 "WD repeat-containing pro | 0.330 | 0.826 | 0.282 | 8.1e-25 | |
| UNIPROTKB|P61964 | 334 | WDR5 "WD repeat-containing pro | 0.330 | 0.826 | 0.282 | 8.1e-25 | |
| UNIPROTKB|F1S034 | 334 | WDR5 "Uncharacterized protein" | 0.330 | 0.826 | 0.282 | 8.1e-25 | |
| MGI|MGI:2155884 | 334 | Wdr5 "WD repeat domain 5" [Mus | 0.330 | 0.826 | 0.282 | 8.1e-25 | |
| RGD|1305159 | 334 | Wdr5 "WD repeat domain 5" [Rat | 0.330 | 0.826 | 0.282 | 8.1e-25 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.340 | 0.208 | 0.285 | 9.2e-25 |
| UNIPROTKB|Q5M786 wdr5 "WD repeat-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 304 (112.1 bits), Expect = 4.1e-26, P = 4.1e-26
Identities = 87/313 (27%), Positives = 149/313 (47%)
Query: 532 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 591
+ A V +T +F L T V S FSP+G+ LA+ DK +W + T+
Sbjct: 27 KPAPVKPNYTL-KFTLA-GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 84
Query: 592 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 651
H I+DV +S + L ++S D+T+++WD + L+T GHS V +F+P + +
Sbjct: 85 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSN 142
Query: 652 LLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVET 710
L+ S + +R W + G C S + + F I++++ + I D +
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 202
Query: 711 QVCRLKLQGHKNQ-VHSVCWNTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKF 768
C L N V V ++ +G+Y LA+ D +++W SKG+C+ +C N+
Sbjct: 203 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY---SKGKCLKTYTCHKNEK 259
Query: 769 HSCVF---HPTFPSLLVIGCYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVAS 823
+ C+F T +V G + L +WN+ T+ L H +V S A ++AS
Sbjct: 260 Y-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEVVQKLQGHTDVVISTACHPTENIIAS 318
Query: 824 AS--HDKCVKIWK 834
A+ +DK +K+WK
Sbjct: 319 AALENDKTIKLWK 331
|
|
| DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 301 (111.0 bits), Expect = 8.6e-26, P = 8.6e-26
Identities = 80/291 (27%), Positives = 142/291 (48%)
Query: 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 614
+ S FSPDGK LA+ DK +W + TLE H + I+D+ +S + ++S
Sbjct: 49 ISSVKFSPDGKWLASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQDSKLICSASD 108
Query: 615 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 674
D+T+++WD E+ ++T GH V + F+P + +L+ S + +R W +N G C
Sbjct: 109 DKTIKIWDVESGKM-VKTLKGHKEYVFGVSFNP-QSNLIVSGSFDENVRIWDVNTGECTK 166
Query: 675 VFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTS 732
+ S T + F +++ + + + I D T Q+ +V V ++ +
Sbjct: 167 MISAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDGKEVSFVKFSPN 226
Query: 733 GEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHP---TFPSLLVIGCYE 787
G++ LA D +R+WS + K C+ + TG+K C+F T +V G +
Sbjct: 227 GKFVLAGTLDNTLRLWSYNNNKK--CLK--TYTGHKNEKYCIFSTFSVTCGKWIVTGSED 282
Query: 788 TL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 834
L ++N+ T TL+ H+ +V ++A ++AS + D+ VKIWK
Sbjct: 283 NLIYIYNLQTREIVQTLAGHEDVVLTVACHPTENIIASGALEKDRSVKIWK 333
|
|
| ASPGD|ASPL0000006214 AN6385 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 310 (114.2 bits), Expect = 1.2e-25, P = 1.2e-25
Identities = 97/297 (32%), Positives = 145/297 (48%)
Query: 544 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 603
E Q + + +E+ FSPDG+LLA+G +D LW S +K TLE H+ + V FS
Sbjct: 33 ELQTLEGHSDWIETVTFSPDGRLLASGSNDTTIKLWDPASGGLKQTLEGHSSSVQSVAFS 92
Query: 604 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 663
P+ LA+ S+D T+++W++ + D T GHS V S+ F P N ++
Sbjct: 93 PNGQLLASGSSDTTIKLWNSAS-DSLKHTMEGHSDRVESVAFSP-----------NGQL- 139
Query: 664 YWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAA-AIENYISILDVETQVCRLK--LQG 719
W+ GS + S + F P G++LA+ + E I + D T C LK L G
Sbjct: 140 -WNPAIGSLKHTIEGHSDWVLSVAFSPD-GQLLASGSAEKTIKLWDSAT--CGLKHTLGG 195
Query: 720 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 778
H N V + ++ G LAS S D +++W SGS H L NK S F P
Sbjct: 196 HSNWVLPLVFSPDGRLLASGSNDATIKLWDPPSGSLK---HTLEGHSNKIESLAFSPN-G 251
Query: 779 SLLVIGCYE-TLELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833
LL G + T++LW+ T + TL H +V S+ S + ++ S S D +K+W
Sbjct: 252 QLLASGSSDATIKLWDTATGSFRHTLKGHSDMVLSVVFSPDSQLLESGSGDNTIKLW 308
|
|
| UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 8.1e-25, P = 8.1e-25
Identities = 83/294 (28%), Positives = 141/294 (47%)
Query: 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 611
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 19 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 78
Query: 612 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 671
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 79 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 136
Query: 672 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 729
C S + + F I++++ + I D + C L N V V +
Sbjct: 137 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 196
Query: 730 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 784
+ +G+Y LA+ D +++W SKG+C+ + TG+K C+F T +V G
Sbjct: 197 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 251
Query: 785 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 834
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 252 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 305
|
|
| UNIPROTKB|Q2KIG2 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 8.1e-25, P = 8.1e-25
Identities = 83/294 (28%), Positives = 141/294 (47%)
Query: 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 611
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 612 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 671
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 672 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 729
C S + + F I++++ + I D + C L N V V +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 730 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 784
+ +G+Y LA+ D +++W SKG+C+ + TG+K C+F T +V G
Sbjct: 223 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 277
Query: 785 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 834
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
|
|
| UNIPROTKB|P61964 WDR5 "WD repeat-containing protein 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 8.1e-25, P = 8.1e-25
Identities = 83/294 (28%), Positives = 141/294 (47%)
Query: 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 611
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 612 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 671
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 672 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 729
C S + + F I++++ + I D + C L N V V +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 730 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 784
+ +G+Y LA+ D +++W SKG+C+ + TG+K C+F T +V G
Sbjct: 223 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 277
Query: 785 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 834
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
|
|
| UNIPROTKB|F1S034 WDR5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 8.1e-25, P = 8.1e-25
Identities = 83/294 (28%), Positives = 141/294 (47%)
Query: 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 611
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 612 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 671
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 672 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 729
C S + + F I++++ + I D + C L N V V +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 730 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 784
+ +G+Y LA+ D +++W SKG+C+ + TG+K C+F T +V G
Sbjct: 223 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 277
Query: 785 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 834
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
|
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| MGI|MGI:2155884 Wdr5 "WD repeat domain 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 8.1e-25, P = 8.1e-25
Identities = 83/294 (28%), Positives = 141/294 (47%)
Query: 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 611
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 612 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 671
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 672 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 729
C S + + F I++++ + I D + C L N V V +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 730 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 784
+ +G+Y LA+ D +++W SKG+C+ + TG+K C+F T +V G
Sbjct: 223 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 277
Query: 785 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 834
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
|
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| RGD|1305159 Wdr5 "WD repeat domain 5" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 8.1e-25, P = 8.1e-25
Identities = 83/294 (28%), Positives = 141/294 (47%)
Query: 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 611
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 612 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 671
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 672 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 729
C S + + F I++++ + I D + C L N V V +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 730 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 784
+ +G+Y LA+ D +++W SKG+C+ + TG+K C+F T +V G
Sbjct: 223 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 277
Query: 785 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 834
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
|
|
| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 319 (117.4 bits), Expect = 9.2e-25, P = 9.2e-25
Identities = 84/294 (28%), Positives = 142/294 (48%)
Query: 544 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 603
E Q + VES FSPDGK L +G +D +W + + TL+ H+ + + FS
Sbjct: 742 EQQTLENHLGPVESVVFSPDGKQLVSGSYDDTVKIWDPATGELLQTLDGHSGTVESLAFS 801
Query: 604 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 663
P LA+ S D T+ +WD+ + L+TF GH ++ S+ F P ++L S ++S I+
Sbjct: 802 PDGKLLASGSYDNTIDLWDSATGEL-LQTFEGHPHSIWSVAFAPDGKEL-ASASDDSTIK 859
Query: 664 YWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHK 721
W + G S + + + F P G++LA++ +++ I + + T + L+G
Sbjct: 860 IWDLATGELQQTLDSHSQSVRSVAFSPD-GKLLASSSLDSTIKVWNPATGELQQSLEGRS 918
Query: 722 NQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 780
V SV ++ G+ LAS S++ V++W+ +G E + L S F P L
Sbjct: 919 GWVKSVAFSPDGKKLASGSEKNTVKLWNPATG---ELLQTLEGHSQSVRSVAFSPDGKQL 975
Query: 781 LVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833
T++LWN T + T HD + ++A S + S S D +K+W
Sbjct: 976 ASSSSDTTIKLWNSTTGELQQTFKGHDLWIRAVAFSPDGKHLVSGSDDNTIKLW 1029
|
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FUY2 | LEUNG_ARATH | No assigned EC number | 0.5816 | 0.8441 | 0.7561 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00016815001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (897 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 834 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-62 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-39 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-30 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-26 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-25 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-21 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-15 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-09 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-09 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-08 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 2e-06 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 3e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-05 | |
| pfam08513 | 27 | pfam08513, LisH, LisH | 1e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-05 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 3e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-04 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 4e-04 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 4e-04 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 8e-04 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 9e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.001 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 0.001 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 0.001 | |
| pfam07321 | 152 | pfam07321, YscO, Type III secretion protein YscO | 0.001 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 0.002 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 0.002 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 0.003 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 0.003 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.004 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 210 bits (537), Expect = 6e-62
Identities = 93/292 (31%), Positives = 146/292 (50%), Gaps = 12/292 (4%)
Query: 548 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 607
+ T V FSPDGKLLATG D +W E+ + TL+ HT + DV S +
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64
Query: 608 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 667
LA+ S+D+T+R+WD E + +RT TGH++ V S+ F P +L S + I+ W +
Sbjct: 65 YLASGSSDKTIRLWDLETGE-CVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDV 122
Query: 668 NNGSCAGVFKCQSGATQM-RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS 726
G C + + F P + +++ + I + D+ T C L GH +V+S
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182
Query: 727 VCWNTSGE-YLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 785
V ++ GE L+S SD +++W + S G+C+ L N +S F P L+
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPD--GYLLASG 237
Query: 786 YE--TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834
E T+ +W++ + + TLS H V+SLA S +AS S D ++IW
Sbjct: 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 1e-39
Identities = 83/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 587 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 646
+ TL+ HT +T V FSP LAT S D T++VWD E + LRT GH+ V +
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-LRTLKGHTGPVRDVAAS 60
Query: 647 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENY-IS 704
L + + IR W + G C S + + F P GRIL+++ + I
Sbjct: 61 ADGTYLASGSSDKT-IRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIK 118
Query: 705 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 763
+ DVET C L+GH + V+SV ++ G ++AS S D +++W + +G C+ L
Sbjct: 119 VWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK---CVATL-- 173
Query: 764 TGNK--FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGM 820
TG+ +S F P LL T++LW+++ K L TL H+ V+S+A S +
Sbjct: 174 TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL 233
Query: 821 VASASHDKCVKIW 833
+AS S D +++W
Sbjct: 234 LASGSEDGTIRVW 246
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 2e-30
Identities = 90/354 (25%), Positives = 142/354 (40%), Gaps = 22/354 (6%)
Query: 494 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 553
S + +++ ++ SL S S
Sbjct: 13 SKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGH------ED 66
Query: 554 KVESCHFSPDGKLLATGGHDKKAVLWC--TESFTVKSTLEEHTQWITDVRF-SPSLSRLA 610
+ S FSPDG+LL +G D LW +KS H ++ + SP + +
Sbjct: 67 SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSIL 126
Query: 611 T--SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 668
SS D TV++WD P +RT GHS +V SL F P + L + I+ W +
Sbjct: 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186
Query: 669 NGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIE-NYISILDVET-QVCRLKLQGHKNQVH 725
G + + + F P G ++A+ I + D+ T ++ R L GH + V
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV 246
Query: 726 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 784
S ++ G LAS S D +R+W + S S + LS + S F P L
Sbjct: 247 S-SFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPDGKLLASGS 303
Query: 785 CYETLELWNMTENK---TLTLSAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK 834
T+ LW++ K +LTL H+ VSSL+ S ++ S S D +++W
Sbjct: 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 113 bits (283), Expect = 1e-26
Identities = 62/193 (32%), Positives = 91/193 (47%), Gaps = 3/193 (1%)
Query: 560 FSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTV 618
FSPDG LLA+G D LW S + TL H+ + V FSP LA+ S+D TV
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV 308
Query: 619 RVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 677
R+WD E S T GH V SL F P L+ ++ IR W + G +
Sbjct: 309 RLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368
Query: 678 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 737
S + F P + + + + + + D+ T L GH ++V S+ ++ G+ LA
Sbjct: 369 GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLA 428
Query: 738 SVS-DELVRVWSI 749
S S D +R+W +
Sbjct: 429 SGSSDNTIRLWDL 441
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-25
Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 9/209 (4%)
Query: 629 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMRF 687
RT GH+ V + F P LL + + I+ W + G K +G +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59
Query: 688 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRV 746
+ + + + I + D+ET C L GH + V SV ++ G L+S S D+ ++V
Sbjct: 60 SADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119
Query: 747 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSA 804
W + G+C+ L + +S F P + + + T++LW++ K + TL+
Sbjct: 120 WDV---ETGKCLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLTG 175
Query: 805 HDKLVSSLAASTVNGMVASASHDKCVKIW 833
H V+S+A S + S+S D +K+W
Sbjct: 176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.6 bits (244), Expect = 1e-21
Identities = 78/299 (26%), Positives = 123/299 (41%), Gaps = 50/299 (16%)
Query: 541 TFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLW-CTESFTVKSTLEEHTQWIT 598
T + T V S FSPDG L+A+G D LW + ++STL H+ +
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV 246
Query: 599 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 658
FSP S LA+ S+D T+R+WD + LRT +GHS++V+S+ F P LL S +
Sbjct: 247 SS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD-GKLLASGSS 304
Query: 659 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 718
+ +R W + G + L L+
Sbjct: 305 DGTVRLWDLETGKL---------------------------------------LSSLTLK 325
Query: 719 GHKNQVHSVCWNTSGEYLAS--VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 776
GH+ V S+ ++ G L S D +R+W + +G + + + S F P
Sbjct: 326 GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE----GHSNVLSVSFSPD 381
Query: 777 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834
+ T+ LW+++ L L H V+SL S +AS S D +++W
Sbjct: 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 3e-15
Identities = 31/82 (37%), Positives = 42/82 (51%)
Query: 541 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 600
T + + V S FSPDG LLA+G D +W + TL HT +T +
Sbjct: 208 TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSL 267
Query: 601 RFSPSLSRLATSSADRTVRVWD 622
+SP RLA+ SAD T+R+WD
Sbjct: 268 AWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-09
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 583 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622
S + TL+ HT +T V FSP LA+ S D T+++WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-09
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622
+ TL+ HT +T V FSP + LA+ S D TVRVWD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.3 bits (134), Expect = 4e-08
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 612
S V S FSPDG+++++G D LW + ++ L+ HT +T + FSP LA+
Sbjct: 371 SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430
Query: 613 SADRTVRVWDTENPDYSL 630
S+D T+R+WD + S+
Sbjct: 431 SSDNTIRLWDLKTSLKSV 448
|
Length = 466 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 2e-06
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 590 LEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLR-------TFTGHSTTVM 641
L+ HT I D++F+P S LA+ S D T+RVW+ + D S++ GH +
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129
Query: 642 SLDFHPSKEDLLCSCDNNSEIRYWSINN 669
+D++P ++CS +S + W I N
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIWDIEN 157
|
Length = 568 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (120), Expect = 3e-06
Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 27/223 (12%)
Query: 551 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ--------------W 596
S++ V + F DG+ AT G +KK ++ ES +K + H W
Sbjct: 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESI-IKDGRDIHYPVVELASRSKLSGICW 540
Query: 597 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 656
+ ++ S++A+S+ + V+VWD + H V S+D+ + LL S
Sbjct: 541 NSYIK-----SQVASSNFEGVVQVWDVARSQL-VTEMKEHEKRVWSIDYSSADPTLLASG 594
Query: 657 DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN----YISILDVETQV 712
++ ++ WSIN G G K ++ ++F GR LA + Y + + + +
Sbjct: 595 SDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPL 654
Query: 713 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG 755
C + GH V V + S ++S +D +++W + G
Sbjct: 655 C--TMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISG 695
|
Length = 793 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-05
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 710 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 748
+ L+GH V SV ++ G+YLAS S D +++W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|149534 pfam08513, LisH, LisH | Back alignment and domain information |
|---|
Score = 42.3 bits (101), Expect = 1e-05
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 10 KMLDVYIYDYLLKRKLHASAKAFQTEG 36
+ L+ IYDYL+K +A+AF E
Sbjct: 1 EELNRLIYDYLVKSGYKETAEAFAKES 27
|
The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex. Length = 27 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 2e-05
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 712 VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 748
L+GH V SV ++ G LAS S D VRVW
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 3e-05
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 597 ITDVRFSP-SLSRLATSSADRTVRVWD------TENPDYSLRTFTGHSTTVMSLDFHPSK 649
I DV F+P +L T+S D T+ W T+N + GH+ V + FHPS
Sbjct: 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA 137
Query: 650 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 680
++L S + + W + G V KC S
Sbjct: 138 MNVLASAGADMVVNVWDVERGKAVEVIKCHS 168
|
Length = 493 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 1e-04
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 541 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 579
+ + + T V S FSPDGK LA+G D LW
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 1e-04
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 796 ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834
TL H V+S+A S ++AS S D V++W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 2e-04
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 548 IPASTSKVESCHFSPDGKLLATGGHDKKAVLW 579
+ T V S FSPDG LLA+G D +W
Sbjct: 7 LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 3e-04
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 795 TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834
+ TL H V+S+A S +AS S D +K+W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 4e-04
Identities = 15/51 (29%), Positives = 18/51 (35%)
Query: 81 SQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQH 131
SQ Q QQ QQ Q + Q + Q QQQQ+ Q
Sbjct: 224 SQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQA 274
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 4e-04
Identities = 24/82 (29%), Positives = 27/82 (32%), Gaps = 8/82 (9%)
Query: 88 EQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAF 147
+Q Q Q Q Q QQ QQ Q QQ Q Q Q + Q L D R G
Sbjct: 625 QQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPGMG 684
Query: 148 TTKMYEDRLKKLPFQRDSLDDA 169
RD+L A
Sbjct: 685 GEAGEAA--------RDALGRA 698
|
Length = 820 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 8e-04
Identities = 62/309 (20%), Positives = 78/309 (25%), Gaps = 41/309 (13%)
Query: 193 AAAIGSQPSGQTLHGTHGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGS----- 247
+ QP GQ S Q QS+ Q MN G G
Sbjct: 136 SRVGTMQPGGQAGGMMQQSSGQPQSQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQQQPPQ 195
Query: 248 ----LIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLT-----------QPYNQL 292
+ G G Q + L QQ+ Q Q
Sbjct: 196 MGQPGMPGGGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQ 255
Query: 293 QLQQLMLQAQQNLAS--------PSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVST 344
Q Q M Q P + +L ML N M G G +
Sbjct: 256 QGQGGMQPQQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQ--MQQMPGGGQGGPGQPMGP 313
Query: 345 VGSAMQIISPGLPRGDNDLLIKQQQQL---------QHYSHHPLSSQQSQNSNPLLQQQD 395
+ G ++ QQQL QQ N QQQ
Sbjct: 314 PPQRPGAVPQGGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQM 373
Query: 396 KILAGGSMTMDGSMSNTFQGN-DQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSP 454
G M QGN N + + + +SS P T + P P P
Sbjct: 374 NQQVGQGGQMVALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQTNQSM-PQPPQP 432
Query: 455 SSPSTHTPG 463
S PS PG
Sbjct: 433 SVPSPGGPG 441
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 9e-04
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 10 KMLDVYIYDYLLKRKLHASAKAFQTEGKVS 39
L+ I +YLL+ +A+ Q E +S
Sbjct: 4 SELNRLILEYLLRNGYEETAETLQKESGLS 33
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.001
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 630 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 666
LRT GH+ V S+ F P +LL S ++ +R W
Sbjct: 4 LRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 87 REQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQ------QQQRRDSTQHLNDTGDDLR 140
+ Q QQ QQ Q QQ QQ Q Q A++QQ +QR + G+ R
Sbjct: 633 QGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPGMGGEAGEAAR 692
Query: 141 PGFAKA 146
+A
Sbjct: 693 DALGRA 698
|
Length = 820 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 46/228 (20%), Positives = 66/228 (28%), Gaps = 17/228 (7%)
Query: 89 QQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAFT 148
Q QQQ Q QQ QQL Q+ Q QQQ D+ + + G
Sbjct: 208 GQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMG----QQQQGQGGMQP 263
Query: 149 TKMYEDRLKKLPFQRDSLDDATIKP--RLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLH 206
+M +++ Q+ L + M Q+ + Q G
Sbjct: 264 QQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQ 323
Query: 207 GTHGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHG-----SNQGAGNV 261
G V Q V S QQ + + G+ H G +
Sbjct: 324 GGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQVGQGGQM 383
Query: 262 TLKGWPLTGLDQFRSGLLQQQK------SLTQPYNQLQLQQLMLQAQQ 303
G+ +Q G Q+ S P Q+Q Q M Q Q
Sbjct: 384 VALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQTNQSMPQPPQ 431
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|148750 pfam07321, YscO, Type III secretion protein YscO | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.001
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 62 IFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQ 121
+ + R NE E + + ++ R++ +Q +QQ Q+ ++ Q + +L Q A+ Q
Sbjct: 76 VGLLRENEASLEQQLAEAKQRLEAERQRLRQARQQLQEARK-AQEKFAELARQEQAEAQA 134
Query: 122 QQQRR 126
Q+Q
Sbjct: 135 QRQYL 139
|
This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis. Length = 152 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 87 REQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQ 130
R+ Q+Q Q + Q Q Q QQ Q Q++
Sbjct: 609 RDLQEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQG 652
|
Length = 820 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 47/223 (21%), Positives = 65/223 (29%), Gaps = 17/223 (7%)
Query: 89 QQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAFT 148
QQ Q Q Q+P Q Q Q Q Q QQ Q G PG
Sbjct: 152 QQSSGQPQSQQPNQ-MGPQQGQAQGQ-AGGMNQGQQGPVGQQQPPQMGQPGMPGGGG--- 206
Query: 149 TKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQP---SGQTL 205
++ + ++ +L + Q +D A +G Q G
Sbjct: 207 ---QGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQP 263
Query: 206 HGTHGVSQQVQSRSQQPPLSTQEVKTEMNPT----MNPRAAGSEGSLIGVHGSNQGAGNV 261
G QV + Q P Q+ + M P M G G +G GA
Sbjct: 264 QQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQ 323
Query: 262 TLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQN 304
+ + + L Q + L Q Q QQ Q N
Sbjct: 324 GGQAVQQGVMSAGQQQLKQMK--LRNMRGQQQTQQQQQQQGGN 364
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 801 TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834
TL H V+ +A S ++A+ S D +K+W
Sbjct: 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWD 37
|
Length = 289 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.003
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 87 REQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQ 130
Q+ +QQ Q + Q Q QQ + QQ QQ Q Q
Sbjct: 616 NAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQ 659
|
Length = 820 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 35.4 bits (82), Expect = 0.004
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 630 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 666
L+T GH+ V S+ F P L S ++ I+ W
Sbjct: 5 LKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 40.3 bits (93), Expect = 0.004
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 80 ESQVIKAREQQQQQQQQHQKPQQHQQM-QVQQLLLQRHAQQQQQQQR 125
+ ++ EQQ+QQQ HQ QQ QQ Q QQ+LLQ+ Q Q QQ
Sbjct: 338 QEMEMQRIEQQRQQQIMHQHQQQQQQEHQQQQMLLQQQQQMHQLQQH 384
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 834 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.98 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.96 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.96 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.96 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.96 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.95 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.95 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.94 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| PTZ00421 | 493 | coronin; Provisional | 99.94 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.94 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.94 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.93 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.93 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.93 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.93 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.93 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.92 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.92 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.92 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.92 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.92 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.91 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.91 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.91 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.91 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.91 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.91 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.9 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.9 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.9 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.89 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.89 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.89 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.89 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.89 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.89 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.88 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.88 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.88 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.88 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.87 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.87 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.86 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.86 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.86 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.85 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.85 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.85 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.85 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.85 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.84 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.84 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.84 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.84 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.83 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.83 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.82 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.82 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.82 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.81 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.81 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.8 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.79 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.79 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.78 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.78 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.77 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.76 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.76 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.75 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.73 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.73 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.73 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.72 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.72 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.72 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.72 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.71 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.71 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.7 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.68 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.67 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.67 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.67 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.67 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.66 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.66 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.66 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.65 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.65 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.64 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.64 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.64 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.64 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.63 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.63 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.62 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.62 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.61 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.61 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.6 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.59 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.59 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.59 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.59 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.58 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.58 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.57 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.57 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.56 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.56 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.56 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.55 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.55 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.55 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.55 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.53 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.53 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.52 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.52 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.5 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.5 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.49 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.48 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.48 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.46 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.44 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.44 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.44 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.42 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.42 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.42 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.41 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.4 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.4 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.39 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.39 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.39 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.38 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.38 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.38 | |
| KOG4594 | 354 | consensus Sequence-specific single-stranded-DNA-bi | 99.37 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.35 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.35 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.3 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.3 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.28 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.26 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.26 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.26 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.24 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.24 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.22 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.21 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.21 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.19 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.18 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.18 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.17 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.17 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.17 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.16 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.14 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.13 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.12 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.12 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.12 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.12 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.11 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.04 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.01 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.01 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.98 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.97 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.97 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.95 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.95 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.93 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.93 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.92 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.91 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.9 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.88 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.84 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.83 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.82 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.77 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.77 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.76 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.74 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.71 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.7 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.69 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.65 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.63 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.62 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.6 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.57 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.54 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.54 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.54 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.53 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.53 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.52 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.5 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.49 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.47 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.46 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.46 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.45 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.44 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.44 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.42 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 98.42 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.4 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.4 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.39 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.39 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.38 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.3 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.3 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.29 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.29 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.29 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.25 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.25 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.24 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.22 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.2 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.2 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.19 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.14 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.13 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.11 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.1 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.09 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.09 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.08 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.08 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.03 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.02 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.99 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.97 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.94 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.93 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.93 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.93 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.88 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.88 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.85 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.76 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.75 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.7 | |
| PRK10115 | 686 | protease 2; Provisional | 97.7 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.68 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.61 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 97.59 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.57 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.47 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.44 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.43 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.42 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.41 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.35 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.33 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.29 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.26 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.25 | |
| PRK10115 | 686 | protease 2; Provisional | 97.24 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.23 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.17 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 97.17 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.09 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.06 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 97.06 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.02 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 97.0 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.99 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.96 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.95 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.93 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.9 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.89 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.89 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.88 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.86 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.84 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.77 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.76 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 96.75 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.7 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.68 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.67 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.58 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.58 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.53 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 96.52 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.5 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 96.48 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.45 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 96.44 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.44 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 96.42 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.35 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 96.25 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.11 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.07 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.96 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.88 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.82 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.75 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.71 | |
| PLN02153 | 341 | epithiospecifier protein | 95.68 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 95.66 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 95.61 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.55 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.54 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 95.48 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.39 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 95.38 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 95.33 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.2 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.17 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.07 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 94.85 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 94.82 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.81 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 94.79 | |
| PRK10350 | 145 | hypothetical protein; Provisional | 94.64 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 94.52 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 94.5 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 94.48 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.4 | |
| KOG1896 | 1366 | consensus mRNA cleavage and polyadenylation factor | 94.31 | |
| PLN02153 | 341 | epithiospecifier protein | 94.28 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.22 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 94.15 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.08 | |
| PLN02193 | 470 | nitrile-specifier protein | 93.99 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 93.99 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 93.91 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 93.85 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 93.83 | |
| PF11498 | 468 | Activator_LAG-3: Transcriptional activator LAG-3; | 93.65 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 93.61 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 93.58 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 93.54 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 93.47 | |
| PLN02193 | 470 | nitrile-specifier protein | 93.36 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 93.18 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 92.95 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 92.92 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 92.89 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 92.86 | |
| TIGR01063 | 800 | gyrA DNA gyrase, A subunit. This model describes t | 92.85 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 92.83 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 92.83 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 92.79 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 92.69 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 92.66 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 92.59 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 92.51 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 92.51 | |
| PRK05560 | 805 | DNA gyrase subunit A; Validated | 92.38 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 92.34 | |
| PRK05560 | 805 | DNA gyrase subunit A; Validated | 92.23 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 91.91 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 91.74 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 91.67 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 91.53 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 91.46 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 91.43 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 91.28 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 91.17 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 91.14 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 91.1 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 91.05 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 91.03 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 90.94 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 90.59 | |
| PF11498 | 468 | Activator_LAG-3: Transcriptional activator LAG-3; | 90.53 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 90.49 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 90.45 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 90.43 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 90.06 | |
| KOG4369 | 2131 | consensus RTK signaling protein MASK/UNC-44 [Signa | 89.7 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 89.68 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 89.63 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 89.47 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 88.79 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-44 Score=369.96 Aligned_cols=306 Identities=24% Similarity=0.392 Sum_probs=276.4
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
..+++|+.|.++++|+.... .+..+.++|...|.|++|+|||+.||+|+.||.|++||.++
T Consensus 128 ~~l~tGsGD~TvR~WD~~Te-------------------Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 128 SRLVTGSGDTTVRLWDLDTE-------------------TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT 188 (480)
T ss_pred ceEEecCCCceEEeeccCCC-------------------CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCC
Confidence 67899999999999955433 34678899999999999999999999999999999999999
Q ss_pred CeEE-EEeccCCCCeEEEEECC-----CCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEe
Q 003279 584 FTVK-STLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 657 (834)
Q Consensus 584 ~~~~-~~l~~h~~~I~~l~fsp-----dg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs 657 (834)
++.+ ..+.+|...|++++|.| ..++||+++.||.|+|||+..+. ++..+.+|+.+|+|++|-- ..++++++
T Consensus 189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvrwGG--~gliySgS 265 (480)
T KOG0271|consen 189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVRWGG--EGLIYSGS 265 (480)
T ss_pred CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEEEcC--CceEEecC
Confidence 8876 77899999999999976 56799999999999999999755 5889999999999999974 55999999
Q ss_pred CCCcEEEEECCCCceeeEeecC-CCeeEEEEe-----------cCCC-------------------------EEEEEEcC
Q 003279 658 NNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQ-----------PRLG-------------------------RILAAAIE 700 (834)
Q Consensus 658 ~Dg~I~lwDl~s~~~i~~~~~~-~~i~~l~~s-----------p~g~-------------------------~ll~~s~d 700 (834)
.|++|++|+...|.+.+.++.+ ..|+.++.+ |.++ .+++|+.|
T Consensus 266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd 345 (480)
T KOG0271|consen 266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD 345 (480)
T ss_pred CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence 9999999999999998888754 346666555 3333 49999999
Q ss_pred CeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003279 701 NYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 778 (834)
Q Consensus 701 g~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~ 778 (834)
.++.+|+.... +++....+|...|+.+.||||+++|++++ |..|++||-+++ +.+..+.+|-..|+.++|+.|.+
T Consensus 346 ~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG---k~lasfRGHv~~VYqvawsaDsR 422 (480)
T KOG0271|consen 346 FTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG---KFLASFRGHVAAVYQVAWSADSR 422 (480)
T ss_pred ceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc---chhhhhhhccceeEEEEeccCcc
Confidence 99999997654 68888999999999999999999999999 999999999999 88999999999999999999999
Q ss_pred EEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 779 SLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 779 ~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.|++++.|.++++||+++.++. .+.+|...|.++.|+|||..+++|+.|..++||.
T Consensus 423 LlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 423 LLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999887 7889999999999999999999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=356.82 Aligned_cols=289 Identities=24% Similarity=0.380 Sum_probs=265.8
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
..-..+.||.++|.|+.|+|+|+.||+|+.|.++++||+.+..+..+.++|...|.|++|+|||+.||+|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccC----CCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEE
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspd----g~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~ 697 (834)
..+++...+.+.+|...|++++|.|- ...+|++++.||.|+|||+..+.++..+.. ...|+|++|--+ ++|+++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySg 264 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSG 264 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEec
Confidence 99999888999999999999999873 234788999999999999999999988875 456999999755 789999
Q ss_pred EcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEc-----------CCCC-------------------------EEEEEe-
Q 003279 698 AIENYISILDVETQVCRLKLQGHKNQVHSVCWN-----------TSGE-------------------------YLASVS- 740 (834)
Q Consensus 698 s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~s-----------pdg~-------------------------~Lasgs- 740 (834)
+.|++|++|+...|.+...+++|...|+.++.+ |.++ .|++|+
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 999999999999999999999999999999887 2233 489999
Q ss_pred CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCC
Q 003279 741 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG 819 (834)
Q Consensus 741 Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~ 819 (834)
|.++.+|+-.... +++....+|...|+.+.|+||+++|++++.|..|++||.++|+.+ .+.+|-..|..++|+.|.+
T Consensus 345 d~tlflW~p~~~k--kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR 422 (480)
T KOG0271|consen 345 DFTLFLWNPFKSK--KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR 422 (480)
T ss_pred CceEEEecccccc--cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc
Confidence 7799999876542 678889999999999999999999999999999999999999988 7889999999999999999
Q ss_pred EEEEEecCCcEEEeC
Q 003279 820 MVASASHDKCVKIWK 834 (834)
Q Consensus 820 ~LaSgs~DG~I~IWd 834 (834)
+|++|+.|.++++||
T Consensus 423 LlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 423 LLVSGSKDSTLKVWD 437 (480)
T ss_pred EEEEcCCCceEEEEE
Confidence 999999999999996
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=350.38 Aligned_cols=286 Identities=26% Similarity=0.427 Sum_probs=266.5
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCC--CCEEEEEeCCCeEEEE
Q 003279 544 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVW 621 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~IW 621 (834)
....--|-+.+|..|.|+.|++.||||+.+|.++||+..+...+.+|.+|...|.++.|+|. +..+|||+.||+|++|
T Consensus 167 l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw 246 (459)
T KOG0272|consen 167 LVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLW 246 (459)
T ss_pred hhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeee
Confidence 33444577889999999999999999999999999999999999999999999999999996 6689999999999999
Q ss_pred ecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcC
Q 003279 622 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 622 Dl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~d 700 (834)
++++.. ++..+.+|...|..++|+|+|. +|++++.|.+-++||++++..+.... |..+|.+++|+++|..+++|+.|
T Consensus 247 ~~~~e~-~l~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD 324 (459)
T KOG0272|consen 247 KLSQET-PLQDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLD 324 (459)
T ss_pred ccCCCc-chhhhhcchhhheeeeecCCCc-eeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCcc
Confidence 999754 5889999999999999999987 66699999999999999987766555 45679999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC-CCC
Q 003279 701 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFP 778 (834)
Q Consensus 701 g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp-dg~ 778 (834)
..-+|||++++.++..+.+|...|.+|+|+|+|..|++|+ |++++|||++.. ..+..+..|.+.|+.|.|+| .|.
T Consensus 325 ~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---~~ly~ipAH~nlVS~Vk~~p~~g~ 401 (459)
T KOG0272|consen 325 SLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---SELYTIPAHSNLVSQVKYSPQEGY 401 (459)
T ss_pred chhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---ccceecccccchhhheEecccCCe
Confidence 9999999999999999999999999999999999999999 999999999987 66889999999999999998 788
Q ss_pred EEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 779 SLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 779 ~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+|++++.|++++||...+..++ .+.+|++.|.++.+++|+.+|+|++.|.+|++|.
T Consensus 402 fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 402 FLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999988 7889999999999999999999999999999994
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=316.41 Aligned_cols=290 Identities=18% Similarity=0.322 Sum_probs=264.3
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 003279 540 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 619 (834)
Q Consensus 540 ~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~ 619 (834)
..+...++|+||.++|.++.|++|.++|++++.||.+.|||.-+...+..++-...+|..++|+|.++++|+|+-|+.+.
T Consensus 43 i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 43 IQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred eeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeE
Confidence 34556689999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred EEecCCC--C---ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEec-CCC
Q 003279 620 VWDTENP--D---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQP-RLG 692 (834)
Q Consensus 620 IWDl~s~--~---~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp-~g~ 692 (834)
||++.+. + ...+.+.+|.+.+.|+.|.+|+ .|++++.|.++.+||+++++.+..|.. .+.|.++.++| +++
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 9999864 2 2356789999999999999864 355899999999999999999999985 45699999999 999
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe--ecCCCceE
Q 003279 693 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL--SCTGNKFH 769 (834)
Q Consensus 693 ~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~--~~~~~~I~ 769 (834)
.|++|+.|+..++||++.+.++..|.+|...|++|+|.|+|.-+++|+ |++.++||++... .+..+ .....+|+
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~---~~a~ys~~~~~~git 277 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQ---ELAVYSHDSIICGIT 277 (343)
T ss_pred eEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCc---EEeeeccCcccCCce
Confidence 999999999999999999999999999999999999999999999999 8899999999873 34333 33456899
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 770 SCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 770 svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+++|+..|++|++|..|..+.+||.-.++.+ .+.+|++.|+|+..+|||..|+||+.|.+|+||.
T Consensus 278 Sv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 278 SVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999999999998887777 8889999999999999999999999999999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=328.51 Aligned_cols=271 Identities=25% Similarity=0.370 Sum_probs=252.1
Q ss_pred ccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC--CCEEEEEeCCCcE
Q 003279 499 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKA 576 (834)
Q Consensus 499 ~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpd--g~~Lasgs~Dg~I 576 (834)
+...+..+++||.++.+++|.++.. ..+.+|.||+..|.++.|+|. +..||+|+.||+|
T Consensus 183 fS~ds~~laT~swsG~~kvW~~~~~-------------------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtv 243 (459)
T KOG0272|consen 183 FSRDSKHLATGSWSGLVKVWSVPQC-------------------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTV 243 (459)
T ss_pred eecCCCeEEEeecCCceeEeecCCc-------------------ceeEEEeccccceeeEEEccCCCccceeeeccCCce
Confidence 3344578999999999999966543 457899999999999999996 6689999999999
Q ss_pred EEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEE
Q 003279 577 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 656 (834)
Q Consensus 577 ~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasg 656 (834)
++|++++..++..+.+|...|..++|+|+|++|+|++.|.+-++||+.++.. +....+|...|.+|+|++||. ++++|
T Consensus 244 klw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-lL~QEGHs~~v~~iaf~~DGS-L~~tG 321 (459)
T KOG0272|consen 244 KLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-LLLQEGHSKGVFSIAFQPDGS-LAATG 321 (459)
T ss_pred eeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-hHhhcccccccceeEecCCCc-eeecc
Confidence 9999999999999999999999999999999999999999999999998664 677789999999999999987 88899
Q ss_pred eCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcC-CCC
Q 003279 657 DNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT-SGE 734 (834)
Q Consensus 657 s~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~sp-dg~ 734 (834)
+.|..-+|||++++.++..+.. ...|..+.|+|+|-.+++|+.|++++|||++...++..+.+|.+-|+.|+|+| .|.
T Consensus 322 GlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~ 401 (459)
T KOG0272|consen 322 GLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGY 401 (459)
T ss_pred CccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCe
Confidence 9999999999999999999885 56799999999999999999999999999999999999999999999999998 788
Q ss_pred EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003279 735 YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 793 (834)
Q Consensus 735 ~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwd 793 (834)
+|++++ |++++||..++. .++..+.+|.+.|.++.+++++.+|++++.|.++++|.
T Consensus 402 fL~TasyD~t~kiWs~~~~---~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 402 FLVTASYDNTVKIWSTRTW---SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEEcccCcceeeecCCCc---ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999 999999999888 78999999999999999999999999999999999995
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=303.23 Aligned_cols=289 Identities=23% Similarity=0.431 Sum_probs=264.2
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 621 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~-t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 621 (834)
.++..+.+|++.|+++.|+|+|.+||+|+.|..|.+|++. ..+...++++|.+.|..+.|.+|+..|++++.|++|+.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 3456778999999999999999999999999999999954 455667888999999999999999999999999999999
Q ss_pred ecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCC
Q 003279 622 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 701 (834)
Q Consensus 622 Dl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg 701 (834)
|+++++. ++.+.+|...|+.++-+.-|..++++++.||++++||+++..++.++.....++++.|...+..+++|+-|+
T Consensus 118 D~~tG~~-~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 118 DAETGKR-IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred eccccee-eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccC
Confidence 9999875 888999999999999877888899999999999999999999999998889999999999999999999999
Q ss_pred eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc-eeEEEeecCCC----ceEEEEEeC
Q 003279 702 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTGN----KFHSCVFHP 775 (834)
Q Consensus 702 ~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~-~~i~~~~~~~~----~I~svafsp 775 (834)
.|++||++.......+.+|.+.|+.+..+++|.++.+-+ |.++++||++..... .++..+.++.. ....++|+|
T Consensus 197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp 276 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP 276 (338)
T ss_pred ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence 999999999999999999999999999999999999988 999999999865432 34666666543 346789999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 776 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 776 dg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
++.++.+|+.|..+++||......+ .+.+|.+.|.++.|+|...+|.+++.|.+|++
T Consensus 277 ~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 277 NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 9999999999999999999986666 88999999999999999999999999999976
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=288.81 Aligned_cols=285 Identities=20% Similarity=0.326 Sum_probs=245.0
Q ss_pred eEEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEeCC-----CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 003279 543 TEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTE-----SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 616 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpd-g~~Lasgs~Dg~I~IWd~~-----t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 616 (834)
....++++|++.|+.++..+. ...|++++.|.+|.+|++. .|.+++.+++|+..|..+..++|+.+.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 345688999999999999886 5688999999999999764 5777899999999999999999999999999999
Q ss_pred eEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec--CCCeeEEEEecC--CC
Q 003279 617 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPR--LG 692 (834)
Q Consensus 617 ~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~--~~~i~~l~~sp~--g~ 692 (834)
++++||+.++ ...+.|.+|...|.+++|++|+. -+++|+.|.+|++|++........... ..-|.|++|+|+ ..
T Consensus 86 ~lrlWDl~~g-~~t~~f~GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 86 TLRLWDLATG-ESTRRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred eEEEEEecCC-cEEEEEEecCCceEEEEecCCCc-eeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 9999999987 45889999999999999999966 566999999999999985443333333 345999999998 68
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003279 693 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 771 (834)
Q Consensus 693 ~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 771 (834)
+|+.++.|++|++||+++.+....+.+|.+.++.+++||||.+.++|+ ||.+.+||++.+ +.+..+. +...|.++
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---k~lysl~-a~~~v~sl 239 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---KNLYSLE-AFDIVNSL 239 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC---ceeEecc-CCCeEeeE
Confidence 899999999999999999999999999999999999999999999999 999999999988 5555544 67889999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCeEE-E----eccC-----CCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 772 VFHPTFPSLLVIGCYETLELWNMTENKTL-T----LSAH-----DKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 772 afspdg~~L~sgs~dg~I~Iwdl~~~~~~-~----l~~h-----~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+|+|+...|+.+ .+..|+|||+.++.++ . +.+. .-...+++|++||..|++|-.|+.|++|.
T Consensus 240 ~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 240 CFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 999997655554 4456999999998876 1 1122 23356789999999999999999999994
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=306.37 Aligned_cols=338 Identities=19% Similarity=0.321 Sum_probs=282.7
Q ss_pred CcccCCCcccCCCceEEeccCCCCeEEeecCCC------------------------------CCCCcccccccccCCCe
Q 003279 491 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDD------------------------------ADPRDRVGRSAEVGKGF 540 (834)
Q Consensus 491 ~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~------------------------------~~~~~~~~~~~~~~~g~ 540 (834)
.+......+.....++++|...++|++|..... .++++++++.+.+++|.
T Consensus 59 ~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~ 138 (603)
T KOG0318|consen 59 AHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGN 138 (603)
T ss_pred cceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCC
Confidence 444445555556679999999999999976652 24678888989889988
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 003279 541 TFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 619 (834)
Q Consensus 541 ~~~~~~~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~ 619 (834)
...+ +.||...|.+|+|-|... +++||++|++|.+|+-...+...++..|...|.|++|+|||.++++++.||+|.
T Consensus 139 SvGe---i~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~ 215 (603)
T KOG0318|consen 139 SVGE---ITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIY 215 (603)
T ss_pred ccce---eeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEE
Confidence 7555 569999999999999776 599999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCceeeeec---cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-------------------
Q 003279 620 VWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------------------- 677 (834)
Q Consensus 620 IWDl~s~~~~i~~~~---~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~------------------- 677 (834)
|||=.+++. +..+. +|.+.|.+++|+||+..++ +++.|.+++|||+.+.+++.++.
T Consensus 216 iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs~~~~-T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~l 293 (603)
T KOG0318|consen 216 IYDGKTGEK-VGELEDSDAHKGSIFALSWSPDSTQFL-TVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHL 293 (603)
T ss_pred EEcCCCccE-EEEecCCCCccccEEEEEECCCCceEE-EecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeE
Confidence 999998775 55555 8999999999999988555 89999999999999887655332
Q ss_pred -------------------------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE-----------Ee---
Q 003279 678 -------------------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK-----------LQ--- 718 (834)
Q Consensus 678 -------------------------~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~-----------l~--- 718 (834)
|...|+++..++++.+|++++.||.|.-||..++..-.. +.
T Consensus 294 ItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~ 373 (603)
T KOG0318|consen 294 ITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE 373 (603)
T ss_pred EEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecC
Confidence 123578999999999999999999999999876432100 00
Q ss_pred ------------------------CC-------------------------------------------CCCEEEEEEcC
Q 003279 719 ------------------------GH-------------------------------------------KNQVHSVCWNT 731 (834)
Q Consensus 719 ------------------------~h-------------------------------------------~~~I~sl~~sp 731 (834)
.+ .....+++++|
T Consensus 374 ~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~ 453 (603)
T KOG0318|consen 374 SGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP 453 (603)
T ss_pred CCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC
Confidence 00 01235688899
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--EeccCCCC
Q 003279 732 SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKL 808 (834)
Q Consensus 732 dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~--~l~~h~~~ 808 (834)
++.++++|+ |+.|+||.+..... ........|..+|++++|+||+.+|+++...+.+.+||+.+.+.. ...-|...
T Consensus 454 ~~~~vaVGG~Dgkvhvysl~g~~l-~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtak 532 (603)
T KOG0318|consen 454 DGSEVAVGGQDGKVHVYSLSGDEL-KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAK 532 (603)
T ss_pred CCCEEEEecccceEEEEEecCCcc-cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeee
Confidence 999999999 99999999987643 333455678999999999999999999999999999999998876 45569999
Q ss_pred eEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 809 VSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 809 V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|.|++|+|+..++|||+-|-.|.||+
T Consensus 533 I~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 533 INCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred EEEEEeCCCceEEEeccccceEEEEE
Confidence 99999999999999999999999995
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=297.81 Aligned_cols=284 Identities=32% Similarity=0.539 Sum_probs=255.0
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 625 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s 625 (834)
..+.+|.++|++++|+|++++|++++.||.|++|++.+++....+..|...+.++.|++++++|++++.|+.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 46779999999999999999999999999999999999888888899999999999999999999999999999999997
Q ss_pred CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003279 626 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYIS 704 (834)
Q Consensus 626 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~ 704 (834)
.. .+..+..|...|.++.|++++ .++++++.|+.|++||+++++....+. +...+.++.|+|++.++++++.++.|+
T Consensus 83 ~~-~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 83 GE-CVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred cc-ceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 54 366777888899999999984 477778789999999999888887777 456799999999988887777799999
Q ss_pred EEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003279 705 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 705 iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sg 783 (834)
+||+++++.+..+..|...|.+++|+|++..+++++ |+.|++||++.+ ..+..+..+...+.+++|++++.+++++
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---ceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 999999988888888999999999999998888888 999999999886 5666676778899999999998877777
Q ss_pred EcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 784 GCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 784 s~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+.++.|++||+.+++.. .+..|...|.+++|++++.+|++++.||.|+|||
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77999999999987766 5668889999999999999999999999999997
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=325.35 Aligned_cols=286 Identities=30% Similarity=0.528 Sum_probs=257.2
Q ss_pred EEEecCC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 003279 545 FQLIPAS-TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 621 (834)
Q Consensus 545 ~~~l~gH-~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 621 (834)
...+.+| ...|.|+.|+++|++|++++.|+.|++|+..+.+ ....+.+|...|.+++|+|+++++++++.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 4555554 8899999999999999999999999999998877 777888999999999999999999999999999999
Q ss_pred ecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcC
Q 003279 622 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 622 Dl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~d 700 (834)
|+......++++.+|...|++++|+|++ .++++|+.|++|+|||+++++++..+.. ...|.+++|++++.+|++++.|
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 9966666789999999999999999999 7889999999999999999999999986 4579999999999999999999
Q ss_pred CeEEEEECCCCe--EEEEEeCCCCC--EEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCC---ceEEEE
Q 003279 701 NYISILDVETQV--CRLKLQGHKNQ--VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN---KFHSCV 772 (834)
Q Consensus 701 g~I~iwDl~t~~--~~~~l~~h~~~--I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~---~I~sva 772 (834)
+.|++||+.++. +...+.++... +++++|+|++.+|+++. |+.+++||+..+ .++..+..|.. .+.+..
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~---~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG---KSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC---cceeeecccCCcceeEeccc
Confidence 999999999998 56777776665 99999999999999999 889999999988 66666666665 345556
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccC-CCCeEEEEEeCCCCEEEEEe--cCCcEEEeC
Q 003279 773 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASAS--HDKCVKIWK 834 (834)
Q Consensus 773 fspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h-~~~V~~lafspdg~~LaSgs--~DG~I~IWd 834 (834)
+++.+.++++++.|+.|++||+.++..+ .+.+| ...|..+.|++...++++++ .|+.|++|+
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 6889999999999999999999987766 77889 89999999999999999998 799999995
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=283.28 Aligned_cols=268 Identities=19% Similarity=0.397 Sum_probs=244.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc-eeeeeccCCCCeEEE
Q 003279 565 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSL 643 (834)
Q Consensus 565 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~-~i~~~~~h~~~V~sl 643 (834)
-+|+++++|.+|++|...+|.+..++....+-|+.+...|+++.||+++.- .|++||+++... ++.++.+|...|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEE
Confidence 479999999999999999999999999888899999999999999998754 699999998765 889999999999999
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC-CCC
Q 003279 644 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HKN 722 (834)
Q Consensus 644 ~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~-h~~ 722 (834)
.|..+|+ .+++|++||+++|||++...+-+.+.+..+|+++..+|+-..|+++..+|.|++||+....+...+.. ...
T Consensus 90 gF~~dgr-WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGR-WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCe-EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 9999976 67799999999999999999999999999999999999999999999999999999998876665543 456
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC---CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-
Q 003279 723 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGS---KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN- 797 (834)
Q Consensus 723 ~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~---~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~- 797 (834)
.|.++...|||.+|+++. .|..++|++-... ...++..+..|..-+..|.+||++++|++++.|.+++||+.++-
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 899999999999999988 8899999997643 34677788999999999999999999999999999999999887
Q ss_pred eE-EEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 798 KT-LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 798 ~~-~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+. +.+.+|...+++++||.||.||+||+.|+.+++|+
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 22 26779999999999999999999999999999997
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=298.78 Aligned_cols=289 Identities=20% Similarity=0.382 Sum_probs=265.3
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 003279 540 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 619 (834)
Q Consensus 540 ~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~ 619 (834)
..++..+++.+|.+.|.|+++.|...+|++|+.|++|+|||+.+++...++.+|...|..+++++...||++++.|+.|+
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEE
Q 003279 620 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAA 698 (834)
Q Consensus 620 IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s 698 (834)
+||++..+. ++.+.+|-..|.|++.+|.-+ +|++|+.|.++++||+++...+..+. +...|..+.+.|....+++++
T Consensus 219 CwDLe~nkv-IR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 219 CWDLEYNKV-IRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS 296 (460)
T ss_pred EEechhhhh-HHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec
Confidence 999998664 899999999999999999855 77799999999999999999999988 567799999999999999999
Q ss_pred cCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003279 699 IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 778 (834)
Q Consensus 699 ~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~ 778 (834)
.|++|++||++.++....+..|...|.+++.+|....+++++.+.|+.|++..+ ..+..+.+|...|++++...|+
T Consensus 297 ~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g---~f~~nlsgh~~iintl~~nsD~- 372 (460)
T KOG0285|consen 297 HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEG---EFLQNLSGHNAIINTLSVNSDG- 372 (460)
T ss_pred CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCcc---chhhccccccceeeeeeeccCc-
Confidence 999999999999999999999999999999999999999999777999999988 6777789999999999998887
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEe---------ccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 779 SLLVIGCYETLELWNMTENKTLTL---------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 779 ~L~sgs~dg~I~Iwdl~~~~~~~l---------~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++++|+.+|.|.+||.+++-.... ...+..|.+.+|...|..|++|..|.+|++|+
T Consensus 373 v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 588899999999999998865511 12356799999999999999999999999995
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=301.73 Aligned_cols=293 Identities=20% Similarity=0.345 Sum_probs=249.1
Q ss_pred CCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec---cCCCCeEEEEECCCCCEEEEEeC
Q 003279 538 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSA 614 (834)
Q Consensus 538 ~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~---~h~~~I~~l~fspdg~~Latgs~ 614 (834)
.|.+|+...+++.|..-|.|+.|+|||.++|+++.||+|.|||-.+++.+..+. +|.+.|.++.|+||++.|+|++.
T Consensus 176 eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa 255 (603)
T KOG0318|consen 176 EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA 255 (603)
T ss_pred eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC
Confidence 567788888999999999999999999999999999999999999999999997 89999999999999999999999
Q ss_pred CCeEEEEecCCCCc------------------------------------------eeeeeccCCCCeEEEEEccCCCcE
Q 003279 615 DRTVRVWDTENPDY------------------------------------------SLRTFTGHSTTVMSLDFHPSKEDL 652 (834)
Q Consensus 615 Dg~I~IWDl~s~~~------------------------------------------~i~~~~~h~~~V~sl~fspdg~~l 652 (834)
|++++|||+.+.+. ++..+.+|...|+++..++++. .
T Consensus 256 Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~-~ 334 (603)
T KOG0318|consen 256 DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK-T 334 (603)
T ss_pred CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC-E
Confidence 99999999875431 2345668999999999999985 6
Q ss_pred EEEEeCCCcEEEEECCCCceee-------------------------------Ee-------------e-----------
Q 003279 653 LCSCDNNSEIRYWSINNGSCAG-------------------------------VF-------------K----------- 677 (834)
Q Consensus 653 lasgs~Dg~I~lwDl~s~~~i~-------------------------------~~-------------~----------- 677 (834)
|++|+.||.|.-||+.++..-+ .+ +
T Consensus 335 i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~ 414 (603)
T KOG0318|consen 335 IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVL 414 (603)
T ss_pred EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEc
Confidence 6699999999999987653210 00 0
Q ss_pred ---------------------------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEEeCCCCCEEEEE
Q 003279 678 ---------------------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVC 728 (834)
Q Consensus 678 ---------------------------~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~--~~~~l~~h~~~I~sl~ 728 (834)
..-...+++++|++..+++|+.|+.|+||.+.... ....+..|.++|++++
T Consensus 415 ~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va 494 (603)
T KOG0318|consen 415 SDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA 494 (603)
T ss_pred CCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEE
Confidence 00123578899999999999999999999998754 3345567999999999
Q ss_pred EcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeE-E-EeccC
Q 003279 729 WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT-L-TLSAH 805 (834)
Q Consensus 729 ~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~-~-~l~~h 805 (834)
|+||+.||+++. .+.|.+||+.+.+. ......-|...|.+++|+|+..++++|+-|-.|.||+++.... + ...+|
T Consensus 495 ySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH 572 (603)
T KOG0318|consen 495 YSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAH 572 (603)
T ss_pred ECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecccc
Confidence 999999999999 99999999998743 3444556899999999999999999999999999999987433 2 44589
Q ss_pred CCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 806 DKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 806 ~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
...|+.+.|-. ...|++.+.|..|++|+
T Consensus 573 ~~gVn~v~wld-e~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 573 LGGVNSVAWLD-ESTVVSSGQDANIKVWN 600 (603)
T ss_pred ccCceeEEEec-CceEEeccCcceeEEec
Confidence 88899999964 56788999999999995
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=300.87 Aligned_cols=288 Identities=26% Similarity=0.470 Sum_probs=269.5
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
.+...+.+|..+|+.+-|+|+-.+++++++|++|++||..+++++..+++|.+.|.+|+|+..|++|++++.|-.+.+||
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence 45677789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCC-CeeEEEEecCCCEEEEEEcCC
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIEN 701 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~-~i~~l~~sp~g~~ll~~s~dg 701 (834)
..+...+++...+|...|.+++|-|.|. .+++|+.|.+|+.|++.++-++.++..+. -+..+..+.||..+++++.|.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dq 257 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQ 257 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecCC-eeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCc
Confidence 9976667888999999999999999986 55599999999999999999999998654 488899999999999999999
Q ss_pred eEEEEECCCCeEEEEEeCCCCCEEEEEEcCC---------------CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC
Q 003279 702 YISILDVETQVCRLKLQGHKNQVHSVCWNTS---------------GEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 765 (834)
Q Consensus 702 ~I~iwDl~t~~~~~~l~~h~~~I~sl~~spd---------------g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~ 765 (834)
+|++|-+.++.+...+.+|..+|.|++|-|. +.++++++ |++|++||+.++ .++.++.+|.
T Consensus 258 tl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---~cL~tL~ghd 334 (406)
T KOG0295|consen 258 TLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---MCLFTLVGHD 334 (406)
T ss_pred eEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---eEEEEEeccc
Confidence 9999999999999999999999999999762 24888888 999999999999 8999999999
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 766 NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 766 ~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+.|..++|+|.|+||+++..|++|++||++++.++ .+..|+..|+++.|+.+..+++||+-|-.+++|.
T Consensus 335 nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 335 NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 99999999999999999999999999999999988 6779999999999999999999999999999995
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=276.25 Aligned_cols=289 Identities=21% Similarity=0.313 Sum_probs=251.3
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
..-+|++.+.|.+|+.|....+ ...+++...++.|+.+.+.||+++||+++. -.|++||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG-------------------~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTG-------------------ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhcC-------------------eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEc
Confidence 5578899999999999954332 456778888889999999999999999986 68999999
Q ss_pred CCCe--EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC
Q 003279 582 ESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 582 ~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 659 (834)
.+++ ++.++.+|++.|+.+.|..+|++++|||+||+++|||++... ......|..+|+++..+|+-..+| +|+.+
T Consensus 69 ~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~--~qR~~~~~spVn~vvlhpnQteLi-s~dqs 145 (311)
T KOG0315|consen 69 NSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS--CQRNYQHNSPVNTVVLHPNQTELI-SGDQS 145 (311)
T ss_pred cCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc--cchhccCCCCcceEEecCCcceEE-eecCC
Confidence 8765 578999999999999999999999999999999999999843 444555889999999999966554 99999
Q ss_pred CcEEEEECCCCceeeEeec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC------eEEEEEeCCCCCEEEEEEcC
Q 003279 660 SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQ------VCRLKLQGHKNQVHSVCWNT 731 (834)
Q Consensus 660 g~I~lwDl~s~~~i~~~~~--~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~------~~~~~l~~h~~~I~sl~~sp 731 (834)
|.|++||+....+...+-. ...+.++.+.|+|.+++++...|..++|++-+. +++.+++.|...+..+.+||
T Consensus 146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP 225 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP 225 (311)
T ss_pred CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC
Confidence 9999999998876665543 456899999999999999999999999998754 56777889999999999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCe
Q 003279 732 SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLV 809 (834)
Q Consensus 732 dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V 809 (834)
|+++|++++ |.+++||++++. .+.-..+.+|...+..++||.||.||++++.|+.+++||+..++.+ ...+|....
T Consensus 226 d~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~ 303 (311)
T KOG0315|consen 226 DVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAA 303 (311)
T ss_pred CCcEEEeecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCccccc
Confidence 999999999 999999999876 3555677888999999999999999999999999999999999877 666888888
Q ss_pred EEEEEe
Q 003279 810 SSLAAS 815 (834)
Q Consensus 810 ~~lafs 815 (834)
.|++..
T Consensus 304 vc~~ln 309 (311)
T KOG0315|consen 304 VCVALN 309 (311)
T ss_pred EEEEee
Confidence 777754
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=307.93 Aligned_cols=277 Identities=21% Similarity=0.430 Sum_probs=249.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceee
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 631 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~ 631 (834)
...|..|.|.|+|+.|++|+..|.+.+|+..+......+..|..+|+++.|++++.++++|+.+|.|++|+..-.. +.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--Vk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--VK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh--hH
Confidence 4569999999999999999999999999998777777788999999999999999999999999999999987543 44
Q ss_pred eecc-CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003279 632 TFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVE 709 (834)
Q Consensus 632 ~~~~-h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~ 709 (834)
.+.. |...|.+++|+|+.. .|++|++||+|+|||....+....+.. +-.|.++.|+|....|++++.|+.|++||.+
T Consensus 174 ~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 4444 459999999999754 677999999999999999888877775 4569999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCC
Q 003279 710 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYE 787 (834)
Q Consensus 710 t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg-~~L~sgs~dg 787 (834)
++.|+.++.+|+..|..+.|++++.+|++++ |..+++||+++- +.+..+.+|...+.++.|+|-. ..|.+|+.||
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg 329 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG 329 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---HHHHHhhcchhhheeeccccccccceeeccCCC
Confidence 9999999999999999999999999999999 999999999965 6788889999999999999966 4566788899
Q ss_pred eEEEEECCCCeEE--EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 788 TLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 788 ~I~Iwdl~~~~~~--~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.|..|.+...+++ .-.+|+..|++++|+|-|.+|++|+.|.++++|.
T Consensus 330 svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 330 SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999866655 3458999999999999999999999999999994
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=298.81 Aligned_cols=315 Identities=19% Similarity=0.295 Sum_probs=270.0
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEec----CCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP----ASTSKVESCHFSPDGKLLATGGHDKKAVLW 579 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~----gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IW 579 (834)
.++++|+.|...++|......... .....++....+. ..+..|++++|+.+|.+||+|+.||.++||
T Consensus 192 ~llasg~~~s~ari~~l~e~~~~~---------~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw 262 (524)
T KOG0273|consen 192 GLLASGSGDSTARIWNLLENSNIG---------STQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIW 262 (524)
T ss_pred hhhhccCCccceeeeeehhhcccc---------chhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEE
Confidence 477899999999999554411110 0000011001111 124579999999999999999999999999
Q ss_pred eCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC
Q 003279 580 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 580 d~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 659 (834)
+ .++..+.++..|.++|.++.|+.+|.||++++.|+++.+||..++.. ...+.-|..+-.++.|-.+. -|++++.|
T Consensus 263 ~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~-~q~f~~~s~~~lDVdW~~~~--~F~ts~td 338 (524)
T KOG0273|consen 263 N-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV-KQQFEFHSAPALDVDWQSND--EFATSSTD 338 (524)
T ss_pred e-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE-EEeeeeccCCccceEEecCc--eEeecCCC
Confidence 9 45688889999999999999999999999999999999999988664 66677788877888998654 47799999
Q ss_pred CcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCC-----
Q 003279 660 SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG----- 733 (834)
Q Consensus 660 g~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg----- 733 (834)
+.|+|+.+....++.++.+ +++|.++.|.|.+..|++++.|++++||......+...+..|...|..+.|+|+|
T Consensus 339 ~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n 418 (524)
T KOG0273|consen 339 GCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSN 418 (524)
T ss_pred ceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCC
Confidence 9999999998888888774 6789999999999999999999999999999999999999999999999999965
Q ss_pred ----CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCC
Q 003279 734 ----EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKL 808 (834)
Q Consensus 734 ----~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~ 808 (834)
..+++++ |++|++||+..+ .+++.+..|..+|.+++|+|+|+++++|+.|+.|.+|++++++.+.-....+.
T Consensus 419 ~~~~~~l~sas~dstV~lwdv~~g---v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~ 495 (524)
T KOG0273|consen 419 PNMNLMLASASFDSTVKLWDVESG---VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG 495 (524)
T ss_pred CcCCceEEEeecCCeEEEEEccCC---ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCe
Confidence 3566666 999999999998 89999999999999999999999999999999999999999999988888888
Q ss_pred eEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 809 VSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 809 V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|..++|+.+|.+|+.+-.||.|++-|
T Consensus 496 Ifel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 496 IFELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred EEEEEEcCCCCEEEEEecCCCceEEE
Confidence 99999999999999999999998754
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=279.72 Aligned_cols=275 Identities=16% Similarity=0.281 Sum_probs=235.9
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
....+.+++.|..+-+|....+ +...| ..++.+.||...|..+..++||.+.++++.|+++++||+
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~d-----------d~~~G---~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl 92 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSD-----------DIKYG---VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDL 92 (315)
T ss_pred CCceEEEcccceEEEEEEeccC-----------ccccC---ceeeeeeccceEecceEEccCCceEEeccccceEEEEEe
Confidence 3567889999999999966554 11222 357888999999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeec-cCCCCeEEEEEccCC-CcEEEEEeCC
Q 003279 582 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSK-EDLLCSCDNN 659 (834)
Q Consensus 582 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~-~h~~~V~sl~fspdg-~~llasgs~D 659 (834)
.+++....|.+|...|.+++|++|.+.|++|+.|++|++|++..... ..... .+.+.|.|++|+|+. +.++++++.|
T Consensus 93 ~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck-~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D 171 (315)
T KOG0279|consen 93 ATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK-YTIHEDSHREWVSCVRFSPNESNPIIVSASWD 171 (315)
T ss_pred cCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE-EEEecCCCcCcEEEEEEcCCCCCcEEEEccCC
Confidence 99999999999999999999999999999999999999999986432 33222 237899999999985 5688899999
Q ss_pred CcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 003279 660 SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 738 (834)
Q Consensus 660 g~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Las 738 (834)
++|++||+++.+....+.. .+.++.+.++|||...++|+.||.+.+||++.++.+..+. |...|.+++|+|+...|+.
T Consensus 172 ktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~ 250 (315)
T KOG0279|consen 172 KTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCA 250 (315)
T ss_pred ceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEee
Confidence 9999999999888877765 4558999999999999999999999999999999988876 8899999999999999988
Q ss_pred EeCCeEEEEEcCCCCCceeEEEeec---------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 739 VSDELVRVWSIGSGSKGECIHELSC---------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 739 gsDg~I~IwDl~s~~~~~~i~~~~~---------~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
+.+..|+|||+.+. .++.++.. ......+++|+++|..|+++-.|+.|++|.+.
T Consensus 251 at~~sIkIwdl~~~---~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 251 ATATSIKIWDLESK---AVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccCCceEEEeccch---hhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 88888999999987 34433322 13345778999999999999999999999874
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=295.43 Aligned_cols=282 Identities=25% Similarity=0.441 Sum_probs=249.6
Q ss_pred EEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCC--CeEE--EEec----------cCCCCeEEEEECCCCCEE
Q 003279 545 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTES--FTVK--STLE----------EHTQWITDVRFSPSLSRL 609 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~IWd~~t--~~~~--~~l~----------~h~~~I~~l~fspdg~~L 609 (834)
++.++ |+.+|.+++|+|-.. +|++|+.|-+.++|++.. .... ..++ ..+..|++++|+.+|..|
T Consensus 172 ~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L 250 (524)
T KOG0273|consen 172 AKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL 250 (524)
T ss_pred eeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence 45555 999999999999655 899999999999999874 1111 1111 133579999999999999
Q ss_pred EEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCe-eEEEEe
Q 003279 610 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMRFQ 688 (834)
Q Consensus 610 atgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i-~~l~~s 688 (834)
|+|+.||.++||+.... .+.++..|.++|.++.|+.+|.+ +++++.|+++.+||..++.....+..++.. ..+.|-
T Consensus 251 atG~~~G~~riw~~~G~--l~~tl~~HkgPI~slKWnk~G~y-ilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~ 327 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKDGN--LISTLGQHKGPIFSLKWNKKGTY-ILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ 327 (524)
T ss_pred EEeecCcEEEEEecCch--hhhhhhccCCceEEEEEcCCCCE-EEeccCCccEEEEeccCceEEEeeeeccCCccceEEe
Confidence 99999999999999853 37888999999999999999875 559999999999999999999998876665 778887
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003279 689 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 767 (834)
Q Consensus 689 p~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 767 (834)
.+ ..|++++.|+.|+|+-+....++.++.+|.+.|.++.|+|.|.+|++++ |++++||..... .+.+.+..|...
T Consensus 328 ~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~---~~~~~l~~Hske 403 (524)
T KOG0273|consen 328 SN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS---NSVHDLQAHSKE 403 (524)
T ss_pred cC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC---cchhhhhhhccc
Confidence 65 6789999999999999999999999999999999999999999999999 999999998877 788899999999
Q ss_pred eEEEEEeCCCC---------EEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 768 FHSCVFHPTFP---------SLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 768 I~svafspdg~---------~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|..+.|+|+|+ .|++++.|++|++||+..+.++ .+..|..+|.+++|+|+|+++|+|+.||.|.||+
T Consensus 404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence 99999999864 5899999999999999999988 7779999999999999999999999999999995
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=271.34 Aligned_cols=283 Identities=24% Similarity=0.438 Sum_probs=241.6
Q ss_pred eeEEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCC---CeEEEEe-ccCCCCeEEEEECCCCCEEEEEeCCC
Q 003279 542 FTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES---FTVKSTL-EEHTQWITDVRFSPSLSRLATSSADR 616 (834)
Q Consensus 542 ~~~~~~l~gH~~~V~sl~fSpd-g~~Lasgs~Dg~I~IWd~~t---~~~~~~l-~~h~~~I~~l~fspdg~~Latgs~Dg 616 (834)
+..++.+.+|.++|..++|+|- |..||+|+.|+.|+||+... ..+...+ .+|+..|..++|+|.|++|+++|+|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4567889999999999999998 88999999999999999884 4455555 47999999999999999999999999
Q ss_pred eEEEEecCCCC-ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC---ceeeEee-cCCCeeEEEEecCC
Q 003279 617 TVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFK-CQSGATQMRFQPRL 691 (834)
Q Consensus 617 ~I~IWDl~s~~-~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~---~~i~~~~-~~~~i~~l~~sp~g 691 (834)
++.||.-..+. .++.++.+|...|.|++|+++|. +||+|+.|+.|.||.+..+ +++..+. |...|..+.|+|..
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 99999876544 35788999999999999999976 7889999999999999754 3555555 34569999999999
Q ss_pred CEEEEEEcCCeEEEEECC---CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003279 692 GRILAAAIENYISILDVE---TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 767 (834)
Q Consensus 692 ~~ll~~s~dg~I~iwDl~---t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 767 (834)
..|++++.|++|++|+-. ...++.++.+|...|.+++|++.|..|++++ |++|+||...+. .-..|...
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------~~~~~sr~ 235 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------LSGMHSRA 235 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-------cchhcccc
Confidence 999999999999999876 3488999999999999999999999999999 999999986543 12336678
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCe------EE--EeccCCCCeEEEEEeCC-CCEEEEEecCCcEEEeC
Q 003279 768 FHSCVFHPTFPSLLVIGCYETLELWNMTENK------TL--TLSAHDKLVSSLAASTV-NGMVASASHDKCVKIWK 834 (834)
Q Consensus 768 I~svafspdg~~L~sgs~dg~I~Iwdl~~~~------~~--~l~~h~~~V~~lafspd-g~~LaSgs~DG~I~IWd 834 (834)
++.+.|. ...|++++.|+.|++|.....- .+ ....|+..|+++.|.|. ..+|++|++||.|++|.
T Consensus 236 ~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 236 LYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred eEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 8999998 4469999999999999766431 11 33478999999999995 67999999999999994
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=294.98 Aligned_cols=290 Identities=20% Similarity=0.323 Sum_probs=244.8
Q ss_pred CeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC---CeEEEEeccCCCCeEEEEECCCCCEEEEEeCC
Q 003279 539 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 615 (834)
Q Consensus 539 g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t---~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D 615 (834)
..+..+..++..|++.|+-+.||++|+|||+++.|.+..||++.. .+..+++.+|..+|..+.|+||.++|++|+.|
T Consensus 211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~ 290 (519)
T KOG0293|consen 211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD 290 (519)
T ss_pred cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence 456677889999999999999999999999999999999997653 45578899999999999999999999999999
Q ss_pred CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec--CCCeeEEEEecCCCE
Q 003279 616 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGR 693 (834)
Q Consensus 616 g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~--~~~i~~l~~sp~g~~ 693 (834)
..+.+||+.++......-.++...+.+++|.|||.. +++|+.|+.|..||++... ...... ...|.++++++||++
T Consensus 291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred HheeeccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcE
Confidence 999999999987644444456789999999999886 5599999999999998443 333322 245899999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc--eEE
Q 003279 694 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK--FHS 770 (834)
Q Consensus 694 ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~--I~s 770 (834)
+++.+.|..|++|+.++...+..+. ...+|+++++|.|++++.+.- +..|.+||+... ..+..+.+|... +..
T Consensus 369 vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~---~lv~kY~Ghkq~~fiIr 444 (519)
T KOG0293|consen 369 VLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN---KLVRKYFGHKQGHFIIR 444 (519)
T ss_pred EEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh---hHHHHhhcccccceEEE
Confidence 9999999999999999876665444 456899999999999988877 899999999865 566666666533 333
Q ss_pred EEEe-CCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCC-CEEEEEecCCcEEEeC
Q 003279 771 CVFH-PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 834 (834)
Q Consensus 771 vafs-pdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg-~~LaSgs~DG~I~IWd 834 (834)
-+|- .+..++++|+.|+.|+||+..+++++ .+.+|...|+|++|+|.. .++|+|++||+|+||.
T Consensus 445 SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 445 SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 3444 35589999999999999999999988 788999999999999965 4899999999999994
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=296.58 Aligned_cols=328 Identities=20% Similarity=0.326 Sum_probs=262.9
Q ss_pred CCceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeE
Q 003279 477 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 556 (834)
Q Consensus 477 ~~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~ 556 (834)
....++.|+|++ ++++.|.. ..+.+|..+..... .-.+|...+++.+|.+.|+
T Consensus 97 ~~v~~i~fSPng---------------~~fav~~g-n~lqiw~~P~~~~~-----------~~~pFvl~r~~~g~fddi~ 149 (893)
T KOG0291|consen 97 RGVGAIKFSPNG---------------KFFAVGCG-NLLQIWHAPGEIKN-----------EFNPFVLHRTYLGHFDDIT 149 (893)
T ss_pred CccceEEECCCC---------------cEEEEEec-ceeEEEecCcchhc-----------ccCcceEeeeecCCcccee
Confidence 345566666665 56666654 56888966654321 2345677889999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--EEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC---------
Q 003279 557 SCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--------- 625 (834)
Q Consensus 557 sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~--~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s--------- 625 (834)
++.|+.|.++|++|+.|-+++||+++..+. ...+.+|.+.|..+-|..+...++|.+.||.+.+|.+..
T Consensus 150 si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~ 229 (893)
T KOG0291|consen 150 SIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAE 229 (893)
T ss_pred EEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccc
Confidence 999999999999999999999999987666 577889999999999999999999999999999998761
Q ss_pred --------------CCc-----e-----eeeeccCCCCeEEEEEcc----------------------------------
Q 003279 626 --------------PDY-----S-----LRTFTGHSTTVMSLDFHP---------------------------------- 647 (834)
Q Consensus 626 --------------~~~-----~-----i~~~~~h~~~V~sl~fsp---------------------------------- 647 (834)
++. . ...+......|++.+|++
T Consensus 230 kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~ 309 (893)
T KOG0291|consen 230 KDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQK 309 (893)
T ss_pred ccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccce
Confidence 000 0 001111113444555544
Q ss_pred --------CCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 003279 648 --------SKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 718 (834)
Q Consensus 648 --------dg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~ 718 (834)
.|+.+.+.|+.=|.+.||++.+...+.... |...+++++++|||.++++|+.||.|+|||..++-|..+|.
T Consensus 310 I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt 389 (893)
T KOG0291|consen 310 ILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT 389 (893)
T ss_pred eeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec
Confidence 344444444444566666666555444444 34569999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEcCC-eEEEEECC
Q 003279 719 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCYE-TLELWNMT 795 (834)
Q Consensus 719 ~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-~~~I~svafspdg~~L~sgs~dg-~I~Iwdl~ 795 (834)
.|+..|+.+.|+..|+.+++.+ ||+|+.||+... +..+++... .....+++..|.|..+++|+.|. .|++|++.
T Consensus 390 eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY---rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~q 466 (893)
T KOG0291|consen 390 EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY---RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ 466 (893)
T ss_pred cCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc---ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEee
Confidence 9999999999999999999999 999999999877 666676653 34578899999999999998888 89999999
Q ss_pred CCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 796 ENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 796 ~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+|+.+ .+.+|+++|.+++|+|++..||++++|.+|++||
T Consensus 467 TGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 467 TGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD 506 (893)
T ss_pred cCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence 99999 7889999999999999999999999999999997
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=301.04 Aligned_cols=290 Identities=20% Similarity=0.337 Sum_probs=252.4
Q ss_pred eEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCC-CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 003279 543 TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 620 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~IWd~~t-~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 620 (834)
..+..+.||+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+.+|..|+++|.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 34678899999999999999 899999999999999999876 8999999999999999999999999999999999999
Q ss_pred EecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEc
Q 003279 621 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI 699 (834)
Q Consensus 621 WDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~ 699 (834)
||++++.+ +..+. ....++|+.|+|++.++|++|+.|+.|+.||+++++.+..+.. -+.|..+.|-+++.++++++.
T Consensus 285 wDtETG~~-~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 285 WDTETGQV-LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eccccceE-EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 99999875 33332 3467899999999988999999999999999999999888875 467999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEeC-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC--CceEEEEEeC
Q 003279 700 ENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG--NKFHSCVFHP 775 (834)
Q Consensus 700 dg~I~iwDl~t~~~~~~l~~-h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~--~~I~svafsp 775 (834)
|+.++||+.+.+..+..+.. +.....|+..+|++.++++-+ |+.|.||.+...-.......+.+|. +.-..|.|||
T Consensus 363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp 442 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP 442 (503)
T ss_pred CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence 99999999998866554432 233456889999999999988 9999999976554333444455554 4456789999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCC-CEEEEEecCCcEEEeC
Q 003279 776 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 834 (834)
Q Consensus 776 dg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg-~~LaSgs~DG~I~IWd 834 (834)
||.+|++|+.||.+.+||.++-+.+ .+.+|+..+..+.|+|.. ..+|||+.||.|+|||
T Consensus 443 DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 443 DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999998888 788999999999999965 4899999999999997
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-31 Score=294.23 Aligned_cols=288 Identities=23% Similarity=0.349 Sum_probs=252.4
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 003279 542 FTEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 620 (834)
Q Consensus 542 ~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~D-g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 620 (834)
+..+..+.-...+|..++|+..|.+||.|+.. |.+.||+..+...+....+|...|+|++++|||.++|||+.||.|+|
T Consensus 297 f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKv 376 (893)
T KOG0291|consen 297 FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKV 376 (893)
T ss_pred ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEE
Confidence 34567777777889999999999999998864 79999999998888888999999999999999999999999999999
Q ss_pred EecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC--eeEEEEecCCCEEEEEE
Q 003279 621 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAA 698 (834)
Q Consensus 621 WDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~--i~~l~~sp~g~~ll~~s 698 (834)
||..++ .++.++..|+..|+.+.|+..+. .+++.+-||+|+.||+...++.++|..+.+ ..|++..|.|..+++|+
T Consensus 377 Wn~~Sg-fC~vTFteHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~ 454 (893)
T KOG0291|consen 377 WNTQSG-FCFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGA 454 (893)
T ss_pred EeccCc-eEEEEeccCCCceEEEEEEecCC-EEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeec
Confidence 999975 46999999999999999999976 566889999999999999999999998766 56888888898888888
Q ss_pred cCC-eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC
Q 003279 699 IEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 776 (834)
Q Consensus 699 ~dg-~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspd 776 (834)
.|. .|++|++.+|+.+..+.+|.++|.+++|+|++..|++++ |.+|++||+-... ...+.-.....+..++|+|+
T Consensus 455 ~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~---~~vEtl~i~sdvl~vsfrPd 531 (893)
T KOG0291|consen 455 QDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS---GTVETLEIRSDVLAVSFRPD 531 (893)
T ss_pred cceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC---ceeeeEeeccceeEEEEcCC
Confidence 875 799999999999999999999999999999999999999 9999999997652 22222334678999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEE-E----------------e----ccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 777 FPSLLVIGCYETLELWNMTENKTL-T----------------L----SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 777 g~~L~sgs~dg~I~Iwdl~~~~~~-~----------------l----~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|+.|++++.||.|.+||++.+..+ . + ......++.+++++||.+|++|+....|+||+
T Consensus 532 G~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 532 GKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred CCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 999999999999999999765543 0 1 11235789999999999999999999999985
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=276.55 Aligned_cols=328 Identities=16% Similarity=0.205 Sum_probs=276.0
Q ss_pred CceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEE
Q 003279 478 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 557 (834)
Q Consensus 478 ~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~s 557 (834)
+.+.+.|.......+++ .+....+++++|+-|+...+|.....+ ....+.+|.+.|+|
T Consensus 54 DdS~~tF~~H~~svFav---sl~P~~~l~aTGGgDD~AflW~~~~ge-------------------~~~eltgHKDSVt~ 111 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAV---SLHPNNNLVATGGGDDLAFLWDISTGE-------------------FAGELTGHKDSVTC 111 (399)
T ss_pred ccceeehhhcCCceEEE---EeCCCCceEEecCCCceEEEEEccCCc-------------------ceeEecCCCCceEE
Confidence 33444444433333332 233366899999999999999665542 34667899999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCC
Q 003279 558 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 637 (834)
Q Consensus 558 l~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~ 637 (834)
+.|+.||.+||||+-+|.|+||...++.....+...-+.|.-+.|+|.+.+|+.|+.||.|.+|.+.+.. ..+.+.+|.
T Consensus 112 ~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-~~kv~~Gh~ 190 (399)
T KOG0296|consen 112 CSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-LCKVMSGHN 190 (399)
T ss_pred EEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-eeeEecCCC
Confidence 9999999999999999999999999999998887677789999999999999999999999999999864 478899999
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE
Q 003279 638 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL 715 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~--~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~ 715 (834)
.++++=.|.|+|++++ ++..||+|++||+.++.++..+.. +....++.++..+..++.|..++.+++....+++.+.
T Consensus 191 ~~ct~G~f~pdGKr~~-tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 191 SPCTCGEFIPDGKRIL-TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN 269 (399)
T ss_pred CCcccccccCCCceEE-EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence 9999999999988554 889999999999999999888874 4567889999999999999999999999999998887
Q ss_pred EEe--------CCCCCEEEEE---EcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003279 716 KLQ--------GHKNQVHSVC---WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 716 ~l~--------~h~~~I~sl~---~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sg 783 (834)
... .+...+.|+. |+..-.+.|+|+ ||+|.|||+... .++..-.|...|..+.|-+ ..+|+++
T Consensus 270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~----~~R~~c~he~~V~~l~w~~-t~~l~t~ 344 (399)
T KOG0296|consen 270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS----TLRHICEHEDGVTKLKWLN-TDYLLTA 344 (399)
T ss_pred ecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc----hhheeccCCCceEEEEEcC-cchheee
Confidence 766 3444444554 444556778888 999999999875 3334445778899999999 7899999
Q ss_pred EcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 784 GCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 784 s~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+.+|.|+.||.++|.++ .+.+|...|.+++++|+.++++|+|.|++.+||+
T Consensus 345 c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 345 CANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred ccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 99999999999999988 7889999999999999999999999999999985
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-31 Score=268.79 Aligned_cols=277 Identities=24% Similarity=0.379 Sum_probs=245.3
Q ss_pred CceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEE
Q 003279 478 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 557 (834)
Q Consensus 478 ~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~s 557 (834)
....+.|+.+. +.+.++|.|+.+-+|++... ..+..++-....|..
T Consensus 57 Ki~~~~ws~Ds---------------r~ivSaSqDGklIvWDs~Tt-------------------nK~haipl~s~WVMt 102 (343)
T KOG0286|consen 57 KIYAMDWSTDS---------------RRIVSASQDGKLIVWDSFTT-------------------NKVHAIPLPSSWVMT 102 (343)
T ss_pred ceeeeEecCCc---------------CeEEeeccCCeEEEEEcccc-------------------cceeEEecCceeEEE
Confidence 45567777766 78899999999999966433 234566667788999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCC------eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceee
Q 003279 558 CHFSPDGKLLATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 631 (834)
Q Consensus 558 l~fSpdg~~Lasgs~Dg~I~IWd~~t~------~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~ 631 (834)
|+|+|.|+++|+|+-|+...||++.+. +..+.+.+|++.+.|+.|.+| ..|+|+|.|.++.+||++++.. +.
T Consensus 103 CA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~-~~ 180 (343)
T KOG0286|consen 103 CAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQ-TQ 180 (343)
T ss_pred EEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceE-EE
Confidence 999999999999999999999999854 445778999999999999975 5799999999999999999775 88
Q ss_pred eeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003279 632 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVET 710 (834)
Q Consensus 632 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t 710 (834)
.|.+|.+.|.+++++|...+.|++|+-|+..++||++.+.++..|.. ...|+.++|.|+|.-|++|+.|++.++||++.
T Consensus 181 ~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 181 VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence 99999999999999995556788999999999999999999999985 66799999999999999999999999999999
Q ss_pred CeEEEEEeC--CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003279 711 QVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 787 (834)
Q Consensus 711 ~~~~~~l~~--h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg 787 (834)
...+..+.. ...+|++++||..|++|++|. |..+.|||.-.+ +.+..+.+|++.|.++..+|||.-+++|+.|.
T Consensus 261 D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~---e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 261 DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG---ERVGVLAGHENRVSCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc---ceEEEeeccCCeeEEEEECCCCcEEEecchhH
Confidence 887777763 345899999999999999988 889999999887 77888899999999999999999999999999
Q ss_pred eEEEEE
Q 003279 788 TLELWN 793 (834)
Q Consensus 788 ~I~Iwd 793 (834)
.|+||.
T Consensus 338 ~lriW~ 343 (343)
T KOG0286|consen 338 TLRIWA 343 (343)
T ss_pred heeecC
Confidence 999994
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-31 Score=323.03 Aligned_cols=284 Identities=18% Similarity=0.283 Sum_probs=242.4
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----e----EEEEeccCCCCeEEEEECC-CCCEEEEEeCCCeE
Q 003279 548 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----T----VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTV 618 (834)
Q Consensus 548 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~----~----~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I 618 (834)
+.+|.+.|++++|+|+|++||+|+.|+.|+|||+... . ....+. +...|.+++|++ ++.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997532 1 222333 346799999987 47899999999999
Q ss_pred EEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEe-cCCCEEEEE
Q 003279 619 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ-PRLGRILAA 697 (834)
Q Consensus 619 ~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~s-p~g~~ll~~ 697 (834)
+|||+.++. .+..+.+|...|++++|+|....+|++|+.|+.|++||++++.++..+.....+.++.|+ +++..|++|
T Consensus 558 ~lWd~~~~~-~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 558 QVWDVARSQ-LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEECCCCe-EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEE
Confidence 999998765 477888999999999999855668889999999999999999999888887889999995 468899999
Q ss_pred EcCCeEEEEECCCCe-EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC---CceeEEEeecCCCceEEEE
Q 003279 698 AIENYISILDVETQV-CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS---KGECIHELSCTGNKFHSCV 772 (834)
Q Consensus 698 s~dg~I~iwDl~t~~-~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~---~~~~i~~~~~~~~~I~sva 772 (834)
+.|+.|++||+++.. .+..+.+|...|.++.|. ++.+|++++ |+.|+|||++... ...++..+.+|...+.+++
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 999999999998865 567788899999999997 677888888 9999999997532 2256778889999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEE--------------EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 773 FHPTFPSLLVIGCYETLELWNMTENKTL--------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 773 fspdg~~L~sgs~dg~I~Iwdl~~~~~~--------------~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|++++.+|++++.|+.|++|+......+ ....|...|.+++|++++.+|++|+.||.|+||+
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 9999999999999999999998655322 1123556799999999999999999999999996
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-32 Score=304.23 Aligned_cols=272 Identities=23% Similarity=0.392 Sum_probs=237.8
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-------------------------------eEEEEeccCCCC
Q 003279 548 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-------------------------------TVKSTLEEHTQW 596 (834)
Q Consensus 548 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~-------------------------------~~~~~l~~h~~~ 596 (834)
+..-...|+|+.|++|+++||.|..|..|++|.+... ....++.+|.++
T Consensus 374 ~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GP 453 (707)
T KOG0263|consen 374 FHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGP 453 (707)
T ss_pred EEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCc
Confidence 3333455999999999999999999999999976521 122446799999
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEe
Q 003279 597 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 676 (834)
Q Consensus 597 I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~ 676 (834)
|..+.|+|+.++|++||.|++||+|.+.+.. ++..+.+|..+|+++.|+|.| ++|++++.|++-++|......+.+.+
T Consensus 454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s-~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~PlRif 531 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-CLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKPLRIF 531 (707)
T ss_pred eeeeeecccccceeeccCCcceeeeecccce-eEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCchhhh
Confidence 9999999999999999999999999999866 477888999999999999995 58889999999999999998888888
Q ss_pred ec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC
Q 003279 677 KC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 754 (834)
Q Consensus 677 ~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~ 754 (834)
.+ -+.+.|+.|+|+..++++|+.|.+|++||+.+|..++.|.||.++|++++|+|+|++|++|+ |+.|+|||+.++
T Consensus 532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~-- 609 (707)
T KOG0263|consen 532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG-- 609 (707)
T ss_pred cccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC--
Confidence 75 56799999999999999999999999999999999999999999999999999999999999 999999999998
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-------------------------EeccCCCCe
Q 003279 755 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-------------------------TLSAHDKLV 809 (834)
Q Consensus 755 ~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-------------------------~l~~h~~~V 809 (834)
..+..+.+|.+.|.++.|+.+|..|++++.|.+|++||+..-... .+.....+|
T Consensus 610 -~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv 688 (707)
T KOG0263|consen 610 -SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPV 688 (707)
T ss_pred -cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceE
Confidence 778888899999999999999999999999999999998542211 333445578
Q ss_pred EEEEEeCCCCEEEEE
Q 003279 810 SSLAASTVNGMVASA 824 (834)
Q Consensus 810 ~~lafspdg~~LaSg 824 (834)
.++.|....-.|++|
T Consensus 689 ~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 689 VGLHFTRRNLLLAVG 703 (707)
T ss_pred EEEEEeccceeEEec
Confidence 888888766455554
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-32 Score=303.14 Aligned_cols=253 Identities=23% Similarity=0.433 Sum_probs=221.6
Q ss_pred CCCcccCCCceEEeccCCCCeEEeecCCCC----------C-----CCcccccccccCCCeeeeEEEEecCCCCCeEEEE
Q 003279 495 APNQLTDMDRFVDDGSLDDNVESFLSPDDA----------D-----PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCH 559 (834)
Q Consensus 495 ~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~----------~-----~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~ 559 (834)
....+.+....+|+|-.|..|++|...... . ..+......+..++ ...+++.||.++|..+.
T Consensus 382 ~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~---~~~~~L~GH~GPVyg~s 458 (707)
T KOG0263|consen 382 TCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS---GTSRTLYGHSGPVYGCS 458 (707)
T ss_pred eeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC---ceeEEeecCCCceeeee
Confidence 334455666799999999999999665311 0 01111222222222 33456899999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCC
Q 003279 560 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT 639 (834)
Q Consensus 560 fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~ 639 (834)
|+|+.++|++++.|++|++|.+.+..++..+++|..+|+++.|+|.|-||||+|.|++.++|..+. ..+.+.+.+|-+.
T Consensus 459 FsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~-~~PlRifaghlsD 537 (707)
T KOG0263|consen 459 FSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH-NKPLRIFAGHLSD 537 (707)
T ss_pred ecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc-CCchhhhcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999987 4468999999999
Q ss_pred eEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 003279 640 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 718 (834)
Q Consensus 640 V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~ 718 (834)
|.|+.|+|+.. ++++|+.|.+|++||+.+|..++.|.. ..+|.+++|+|+|.+|++|+.|+.|.+||+.++..+..+.
T Consensus 538 V~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~ 616 (707)
T KOG0263|consen 538 VDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK 616 (707)
T ss_pred cceEEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh
Confidence 99999999965 777999999999999999999999985 5679999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003279 719 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 752 (834)
Q Consensus 719 ~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 752 (834)
+|++.|.++.|+.+|.+|++++ |+.|++||+...
T Consensus 617 ~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 617 GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999999999999999999 999999998754
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-31 Score=295.00 Aligned_cols=288 Identities=21% Similarity=0.326 Sum_probs=260.1
Q ss_pred eEEEEecCCCCCeEEEEE-cCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 003279 543 TEFQLIPASTSKVESCHF-SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 621 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~f-Spdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 621 (834)
...+.+-|..+.|.+++| .|+..+||+++..+.+++|++.+..+. .+.+|++.|.++....+|.+|+|||.|.+|++|
T Consensus 314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilW 392 (775)
T KOG0319|consen 314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILW 392 (775)
T ss_pred EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEE
Confidence 445667788899999987 457789999999999999998887776 889999999999966678899999999999999
Q ss_pred ecCCCC---ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCcee---eEe-------ecCCCeeEEEEe
Q 003279 622 DTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVF-------KCQSGATQMRFQ 688 (834)
Q Consensus 622 Dl~s~~---~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i---~~~-------~~~~~i~~l~~s 688 (834)
.++++. .++....+|...|.+++++..+..+|++++.|++|++|++...+.. ..+ .|...|++++++
T Consensus 393 r~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia 472 (775)
T KOG0319|consen 393 RLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA 472 (775)
T ss_pred EecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec
Confidence 885432 2456678999999999999999999999999999999999862211 111 246789999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003279 689 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 767 (834)
Q Consensus 689 p~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 767 (834)
|+.+.|++|+.|.+.+||+++......++.+|...|.|+.|++....+++++ |++|+||.+.+. .|+.++.+|...
T Consensus 473 ~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f---SClkT~eGH~~a 549 (775)
T KOG0319|consen 473 PNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF---SCLKTFEGHTSA 549 (775)
T ss_pred CCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc---eeeeeecCccce
Confidence 9999999999999999999999999999999999999999999999999999 999999999998 899999999999
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 768 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 768 I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|..+.|-.++..|++++.||-|++|++++++++ ++..|...|++++.++...+++||+.||.|.+|+
T Consensus 550 Vlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 550 VLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred eEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 999999999999999999999999999999988 8889999999999999999999999999999995
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.8e-32 Score=283.98 Aligned_cols=279 Identities=24% Similarity=0.421 Sum_probs=238.4
Q ss_pred CceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEE
Q 003279 478 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 557 (834)
Q Consensus 478 ~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~s 557 (834)
+...+.|.+++ +.|.+|+..+.+.+| .+..+....++.+|+.+|.+
T Consensus 98 ~V~~v~WtPeG---------------RRLltgs~SGEFtLW-------------------Ng~~fnFEtilQaHDs~Vr~ 143 (464)
T KOG0284|consen 98 PVNVVRWTPEG---------------RRLLTGSQSGEFTLW-------------------NGTSFNFETILQAHDSPVRT 143 (464)
T ss_pred ceeeEEEcCCC---------------ceeEeecccccEEEe-------------------cCceeeHHHHhhhhccccee
Confidence 34566777766 778899999999998 33445556678899999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCC
Q 003279 558 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 637 (834)
Q Consensus 558 l~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~ 637 (834)
+.|+++|.++++|+.+|.|++|+..-.........|...|++++|+|+...|++||.||+|+|||....+. .+.+.+|.
T Consensus 144 m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-e~vL~GHg 222 (464)
T KOG0284|consen 144 MKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-ERVLRGHG 222 (464)
T ss_pred EEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch-hheeccCC
Confidence 99999999999999999999998654333333344559999999999999999999999999999987654 56779999
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003279 638 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 716 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~ 716 (834)
-.|.+++|+|... ++++++.|..|++||.+++.|+.++.. ...|..+.|.+++++|++++.|..+++||+++.+.+..
T Consensus 223 wdVksvdWHP~kg-LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~ 301 (464)
T KOG0284|consen 223 WDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFT 301 (464)
T ss_pred CCcceeccCCccc-eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHH
Confidence 9999999999955 888999999999999999999988765 55699999999999999999999999999999999999
Q ss_pred EeCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 717 LQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 717 l~~h~~~I~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
+.+|+..|+++.|+|-. .+|++++ ||.|..|.+...+ .....-..|...|++++|+|-|..|++|+.|.++++|.-
T Consensus 302 ~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 302 YRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred hhcchhhheeeccccccccceeeccCCCceEEEeccccc--cccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 99999999999999954 4555666 9999999998442 222233568899999999999999999999999999974
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=287.21 Aligned_cols=313 Identities=19% Similarity=0.278 Sum_probs=261.0
Q ss_pred ccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCC--EEEEEeCCCcE
Q 003279 499 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLATGGHDKKA 576 (834)
Q Consensus 499 ~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~--~Lasgs~Dg~I 576 (834)
++....++++|+.|+.+++|+-... .....|+||.+.|.++.|+|+-. +|++|..|+.|
T Consensus 113 ~~~~g~LlAtggaD~~v~VWdi~~~-------------------~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v 173 (775)
T KOG0319|consen 113 FDPTGTLLATGGADGRVKVWDIKNG-------------------YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTV 173 (775)
T ss_pred EcCCCceEEeccccceEEEEEeeCC-------------------EEEEEecCCCceEEEEEeCCccchhheeecCCCceE
Confidence 3445589999999999999965443 34678999999999999999765 48999999999
Q ss_pred EEEeCCCCeE-EEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC----------------------------
Q 003279 577 VLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---------------------------- 627 (834)
Q Consensus 577 ~IWd~~t~~~-~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~---------------------------- 627 (834)
++||+.+... +.++..|.+.|++++|++|+..+++++.|..|.|||+...+
T Consensus 174 ~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~ 253 (775)
T KOG0319|consen 174 RVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYI 253 (775)
T ss_pred EEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEE
Confidence 9999996554 77888999999999999999999999999999999875100
Q ss_pred --------------------------------------------------------------------------------
Q 003279 628 -------------------------------------------------------------------------------- 627 (834)
Q Consensus 628 -------------------------------------------------------------------------------- 627 (834)
T Consensus 254 ~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG 333 (775)
T KOG0319|consen 254 ITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLG 333 (775)
T ss_pred EEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecC
Confidence
Q ss_pred ------------c----------eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCcee----eEe-ecCC
Q 003279 628 ------------Y----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA----GVF-KCQS 680 (834)
Q Consensus 628 ------------~----------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i----~~~-~~~~ 680 (834)
. ....+.+|+..|.+++...+| .+|++|+.|+++++|.++++... ... .|..
T Consensus 334 ~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~ 412 (775)
T KOG0319|consen 334 PEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTN 412 (775)
T ss_pred CccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhhhhhccccc
Confidence 0 012345688888888854454 58999999999999988554322 222 2456
Q ss_pred CeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeE-----EE----EEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEc
Q 003279 681 GATQMRFQPRL-GRILAAAIENYISILDVETQVC-----RL----KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 749 (834)
Q Consensus 681 ~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~~~-----~~----~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl 749 (834)
.|.+++++..+ .+|++++.|.+|++|++...+. +. ....|...|+|++++|+.++|++|+ |.+.+||++
T Consensus 413 svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~l 492 (775)
T KOG0319|consen 413 SVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDL 492 (775)
T ss_pred ccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecc
Confidence 68888887654 5678888999999999986211 11 2235999999999999999999999 999999999
Q ss_pred CCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCC
Q 003279 750 GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDK 828 (834)
Q Consensus 750 ~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG 828 (834)
... .....+.+|...|.++.|++....+++++.|.+|+||.+.+..++ ++.+|...|..+.|-.+++.|++|+.||
T Consensus 493 e~~---~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adG 569 (775)
T KOG0319|consen 493 EQL---RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADG 569 (775)
T ss_pred cCc---eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCC
Confidence 965 889999999999999999999999999999999999999999998 7889999999999999999999999999
Q ss_pred cEEEeC
Q 003279 829 CVKIWK 834 (834)
Q Consensus 829 ~I~IWd 834 (834)
.|+||+
T Consensus 570 liKlWn 575 (775)
T KOG0319|consen 570 LIKLWN 575 (775)
T ss_pred cEEEEe
Confidence 999996
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=270.93 Aligned_cols=272 Identities=25% Similarity=0.464 Sum_probs=245.3
Q ss_pred ccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003279 499 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 578 (834)
Q Consensus 499 ~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~I 578 (834)
+.....++++.+.|.++++|+.... ...+.++||++.|.+|+|+..|++||+++.|-.+.+
T Consensus 116 ~hp~~~~v~~as~d~tikv~D~~tg-------------------~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 116 FHPSEALVVSASEDATIKVFDTETG-------------------ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred eccCceEEEEecCCceEEEEEccch-------------------hhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 3334467788889999999955433 225778999999999999999999999999999999
Q ss_pred EeCCC-CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEe
Q 003279 579 WCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 657 (834)
Q Consensus 579 Wd~~t-~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs 657 (834)
||.++ .++++.+.+|...|.+++|-|.|.+|++++.|.+|+.|++.++ +++.++.+|...|..++.+.||. ++++|+
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg-~cv~t~~~h~ewvr~v~v~~DGt-i~As~s 254 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG-YCVKTFPGHSEWVRMVRVNQDGT-IIASCS 254 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc-eeEEeccCchHhEEEEEecCCee-EEEecC
Confidence 99987 6778888999999999999999999999999999999999985 46999999999999999999965 899999
Q ss_pred CCCcEEEEECCCCceeeEeec-CCCeeEEEEecC---------------CCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 003279 658 NNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPR---------------LGRILAAAIENYISILDVETQVCRLKLQGHK 721 (834)
Q Consensus 658 ~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~---------------g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~ 721 (834)
.|.+|++|-+.++.|...+.. ...+.|++|.|. +.++++++.|++|++||+.++.++.++.+|.
T Consensus 255 ~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghd 334 (406)
T KOG0295|consen 255 NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHD 334 (406)
T ss_pred CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEeccc
Confidence 999999999999988777764 566888888773 2478899999999999999999999999999
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 722 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 722 ~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
++|..++|+|.|+||+++. |++++|||+.+. .|...+..|..-++++.|+.+..++++|+-|..+++|..
T Consensus 335 nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~---~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 335 NWVRGVAFSPGGKYILSCADDKTLRVWDLKNL---QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ceeeeeEEcCCCeEEEEEecCCcEEEEEeccc---eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999 889999999998 899999999999999999999999999999999999974
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-30 Score=285.01 Aligned_cols=281 Identities=20% Similarity=0.387 Sum_probs=255.3
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 625 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s 625 (834)
..+.||...|.+++||.|...+++|+ .+.|+||+..+.++++++... .+.+..|.|.++++++|...|.+.+||+.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 45679999999999999998888776 478999999999999999643 899999999999999999999999999998
Q ss_pred CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-----Cce--------eeEeecCCCeeEEEEecCCC
Q 003279 626 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSC--------AGVFKCQSGATQMRFQPRLG 692 (834)
Q Consensus 626 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s-----~~~--------i~~~~~~~~i~~l~~sp~g~ 692 (834)
... +.++..|.+.|++++.+||+.. +++++.|.+|++||..- +.. .+++.....|.|+.++||++
T Consensus 444 ~~l-~Eti~AHdgaIWsi~~~pD~~g-~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 444 ASL-VETIRAHDGAIWSISLSPDNKG-FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred hhh-hhhhhccccceeeeeecCCCCc-eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 664 6777899999999999999875 45999999999999742 111 13445578899999999999
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003279 693 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 771 (834)
Q Consensus 693 ~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 771 (834)
+++++--|++|+||-+++-+....+.||.-+|.|+.++||++++++|+ |..|+||-+.-| .|-..+-.|...|.++
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG---DCHKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG---DCHKSFFAHDDSVMSV 598 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc---hhhhhhhcccCceeEE
Confidence 999999999999999999999999999999999999999999999999 999999999888 7888999999999999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 772 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 772 afspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.|-|....+++++.|+.|+-||-..-+.+ .+.+|...|+|++.+|+|.+++++++|.+|++|.
T Consensus 599 ~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 599 QFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 99999999999999999999998887766 8899999999999999999999999999999995
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=249.17 Aligned_cols=280 Identities=18% Similarity=0.344 Sum_probs=242.8
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEec
Q 003279 544 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 623 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 623 (834)
....+..|.++|.++.|+-||+|.++++.|.+|++|+...+.+++++.+|...|.+++.+.|+..|++|+.|+.|.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC--ceeeEeec-CCCeeEEEEecCCCEEEEEEcC
Q 003279 624 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKC-QSGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 624 ~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~--~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~d 700 (834)
.+++. ++.+.+|.+.|+.+.|+.+. .++++|+.|..+++||.++. +++..+.. ...|.++.+. +..|++|+.|
T Consensus 89 ~TGkv-~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~D 164 (307)
T KOG0316|consen 89 NTGKV-DRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVD 164 (307)
T ss_pred ccCee-eeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccC
Confidence 99875 89999999999999999875 48889999999999999865 45555543 4667777775 4679999999
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCce--EEEEEeCCC
Q 003279 701 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF--HSCVFHPTF 777 (834)
Q Consensus 701 g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I--~svafspdg 777 (834)
|+++.||++.|.....+.+ .+|+|++|++|++.+.+++ |+++++.|-.++ +.+..+.+|.+.- ..+++....
T Consensus 165 GtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tG---klL~sYkGhkn~eykldc~l~qsd 239 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETG---KLLKSYKGHKNMEYKLDCCLNQSD 239 (307)
T ss_pred CcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchh---HHHHHhcccccceeeeeeeecccc
Confidence 9999999999987766654 4799999999999998888 999999999998 6777777776543 456778888
Q ss_pred CEEEEEEcCCeEEEEECCCCeEE-EeccCCCC-eEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 778 PSLLVIGCYETLELWNMTENKTL-TLSAHDKL-VSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 778 ~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~-V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
.+++.|+.||.|++||+.....+ .+..+... |.+++++|.-..|+++...+ +.+|
T Consensus 240 thV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~ 296 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG-DLFW 296 (307)
T ss_pred eeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCc-eece
Confidence 89999999999999999998887 56666666 89999999888777775433 4455
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-30 Score=279.69 Aligned_cols=282 Identities=22% Similarity=0.400 Sum_probs=256.4
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 625 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s 625 (834)
+.+..|+.+|.|+.|+|...+++++-..|.|.|||.++...++.+....-+|.+..|-...+++++|+.|..|+||+..+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC-ceeeEeecCC-CeeEEEEec-CCCEEEEEEcCCe
Q 003279 626 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQS-GATQMRFQP-RLGRILAAAIENY 702 (834)
Q Consensus 626 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~-~~i~~~~~~~-~i~~l~~sp-~g~~ll~~s~dg~ 702 (834)
.+. +..+..|.+.|.||+.+|..++ +.++++|-.|++||.+.+ .+..+|..+. -|.+++|.| |.+.+++++-|++
T Consensus 87 ~ek-V~~FeAH~DyIR~iavHPt~P~-vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 87 GEK-VKTFEAHSDYIRSIAVHPTLPY-VLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred cee-eEEeeccccceeeeeecCCCCe-EEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence 775 8999999999999999999774 559999999999999864 6777887654 489999999 5577999999999
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCC--CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003279 703 ISILDVETQVCRLKLQGHKNQVHSVCWNTSG--EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 779 (834)
Q Consensus 703 I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg--~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~ 779 (834)
|+||.+....+..++++|...|+|+++-+.| .+|++|+ |.+|+|||..+. .|+.++.+|...|..++|+|.-+.
T Consensus 165 VKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---~CV~TLeGHt~Nvs~v~fhp~lpi 241 (794)
T KOG0276|consen 165 VKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---SCVQTLEGHTNNVSFVFFHPELPI 241 (794)
T ss_pred EEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---HHHHHhhcccccceEEEecCCCcE
Confidence 9999999999999999999999999998755 5899998 779999999987 899999999999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 780 LLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 780 L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
|++|+.||+++||+..+-+.. .+.-....|+||+-.+.++.++.|.+.|.|.|
T Consensus 242 iisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 242 IISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999999999999999888776 45556788999999999999999999888754
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=251.30 Aligned_cols=281 Identities=19% Similarity=0.252 Sum_probs=240.6
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC
Q 003279 547 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 547 ~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~ 626 (834)
.+.||..+|+-|.|+.+|.+|++++.|.++.||-..+|+.+.++.+|.+.|+|+..+.+.++++||+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeeeeccCCCCeEEEEEccCCCcEEEEEe----CCCcEEEEECC-------CCceeeEee-cCCCeeEEEEecCCCEE
Q 003279 627 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWSIN-------NGSCAGVFK-CQSGATQMRFQPRLGRI 694 (834)
Q Consensus 627 ~~~i~~~~~h~~~V~sl~fspdg~~llasgs----~Dg~I~lwDl~-------s~~~i~~~~-~~~~i~~l~~sp~g~~l 694 (834)
+. +..+. ...+|..+.|+++|+.++++.. ..+.|.++|++ ..++...+. ..+.++.+.|.|-+..|
T Consensus 85 k~-la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 85 KQ-LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred cE-EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 75 44443 5678999999999887776553 35789999998 344454444 46779999999999999
Q ss_pred EEEEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003279 695 LAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 772 (834)
Q Consensus 695 l~~s~dg~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sva 772 (834)
++|..+|.|.+||++++ +.+.....|...|+.+.+++|..++++++ |.+-++||+.+. .++.++.. ..++++.+
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl---~v~Kty~t-e~PvN~aa 238 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL---EVLKTYTT-ERPVNTAA 238 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce---eeEEEeee-ccccccee
Confidence 99999999999999998 55556677999999999999999999999 999999999987 66666664 67899999
Q ss_pred EeCCCCEEEEEEcCCeEEEE--ECCCCe------------EE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 773 FHPTFPSLLVIGCYETLELW--NMTENK------------TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 773 fspdg~~L~sgs~dg~I~Iw--dl~~~~------------~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
++|...+++.++.....-|- +.+.++ .+ .+.+|-++|++++|+|+|+..++|+.||.|+|.
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 99999988888775533222 223332 22 678999999999999999999999999999974
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=262.94 Aligned_cols=285 Identities=19% Similarity=0.246 Sum_probs=247.1
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEec
Q 003279 544 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 623 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 623 (834)
.+..|..|++.|++|+.+|+.+++|||+.|....||++.++.....+.+|++.|+++.|+.+|.+||||+-+|.|+||+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCe
Q 003279 624 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENY 702 (834)
Q Consensus 624 ~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~ 702 (834)
.++.. ...+......|.-+.|+|.+. +|+.|+.||.|.+|.+.+....+.+. +..++++-.|.|+|++++++..||+
T Consensus 136 stg~~-~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 136 STGGE-QWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred ccCce-EEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 98775 444545667899999999755 77799999999999999976666665 4667999999999999999999999
Q ss_pred EEEEECCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee--------cCC---CceE
Q 003279 703 ISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS--------CTG---NKFH 769 (834)
Q Consensus 703 I~iwDl~t~~~~~~l~~h-~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~--------~~~---~~I~ 769 (834)
|++||++++.++..+... .....++.++..+..++.|+ ++.+++-+..++ +.+.... .+. ..|.
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg---KVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG---KVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc---eEEEecCCCCccccccchhhhhhhh
Confidence 999999999998888742 34567889999999999888 888888888777 3333333 222 3344
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 770 SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 770 svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.+.++..-+..++|+-||+|.|||+...++...-.|...|+.+.|.+ ..+|++++.||.|++||
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD 354 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence 55566667888999999999999999999888889999999999998 78999999999999997
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-31 Score=271.72 Aligned_cols=266 Identities=21% Similarity=0.400 Sum_probs=232.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCce
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 629 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~ 629 (834)
...+.|+|+.+. ...+++|..|.+|+|||..+..++..+.+|++.|.|+.|. .+.|++||.|.+|+|||+.+++ +
T Consensus 195 e~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge-~ 269 (499)
T KOG0281|consen 195 ENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE-P 269 (499)
T ss_pred ccCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc-h
Confidence 355679999996 4479999999999999999999999999999999999995 5699999999999999999876 4
Q ss_pred eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceee---Eee-cCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003279 630 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG---VFK-CQSGATQMRFQPRLGRILAAAIENYISI 705 (834)
Q Consensus 630 i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~---~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~i 705 (834)
+.++.+|...|..+.|+ +.++++|+.|.+|.+||+.....+. .+. +...|+.+.|+. ++|++++.|.+|++
T Consensus 270 l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikv 344 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKV 344 (499)
T ss_pred hhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEE
Confidence 88999999999999998 4488899999999999998765322 222 345677787764 59999999999999
Q ss_pred EECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003279 706 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 784 (834)
Q Consensus 706 wDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs 784 (834)
|++.+++++.++.+|...|.|+.+ .++++++|+ |.+|++||+..+ .++..+.+|+.-|.++.|.. +.|++|+
T Consensus 345 W~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G---~cLRvLeGHEeLvRciRFd~--krIVSGa 417 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRFDN--KRIVSGA 417 (499)
T ss_pred Eeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc---HHHHHHhchHHhhhheeecC--ceeeecc
Confidence 999999999999999999999887 589999999 999999999998 89999999999999999964 4799999
Q ss_pred cCCeEEEEECCCCeE----------EEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 785 CYETLELWNMTENKT----------LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 785 ~dg~I~Iwdl~~~~~----------~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.||+|+|||+..+.- ..+..|.+.|..+.|. ...|++++.|.+|-|||
T Consensus 418 YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 418 YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWD 475 (499)
T ss_pred ccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEE
Confidence 999999999976531 1567899999999986 56799999999999997
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=279.07 Aligned_cols=308 Identities=20% Similarity=0.280 Sum_probs=258.7
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
..+++|-.|+.|++|..... ....++.||...|+++.|+..|..||+|+.|+.|.|||+-.
T Consensus 78 l~lAVGYaDGsVqif~~~s~-------------------~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~ 138 (888)
T KOG0306|consen 78 LLLAVGYADGSVQIFSLESE-------------------EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVG 138 (888)
T ss_pred ceEEEEecCceEEeeccCCC-------------------ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEecc
Confidence 46799999999999954432 23567889999999999999999999999999999999988
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC------------------------------------
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD------------------------------------ 627 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~------------------------------------ 627 (834)
..-...+++|++.|+..-|..+.++|+++|.|+.|++||+++..
T Consensus 139 E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L 218 (888)
T KOG0306|consen 139 EEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWEL 218 (888)
T ss_pred ceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEe
Confidence 78888888998888888888777788888888888888876100
Q ss_pred --------------------------------------------------------------------------------
Q 003279 628 -------------------------------------------------------------------------------- 627 (834)
Q Consensus 628 -------------------------------------------------------------------------------- 627 (834)
T Consensus 219 ~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e 298 (888)
T KOG0306|consen 219 AFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEE 298 (888)
T ss_pred ecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccc
Confidence
Q ss_pred -----------------------------------ce------------------------------eeeeccCCCCeEE
Q 003279 628 -----------------------------------YS------------------------------LRTFTGHSTTVMS 642 (834)
Q Consensus 628 -----------------------------------~~------------------------------i~~~~~h~~~V~s 642 (834)
.. ...+.+|...|.+
T Consensus 299 ~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRs 378 (888)
T KOG0306|consen 299 NEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRS 378 (888)
T ss_pred cccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeE
Confidence 00 0123357777888
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 003279 643 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 722 (834)
Q Consensus 643 l~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~ 722 (834)
++++.+.. +++++ ..+.|++|+..+.+|++++.+. .+.+..|.|.++++++|...|.+.+||+.+...+.++..|.+
T Consensus 379 l~vS~d~~-~~~Sg-a~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdg 455 (888)
T KOG0306|consen 379 LCVSSDSI-LLASG-AGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDG 455 (888)
T ss_pred EEeecCce-eeeec-CCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcccc
Confidence 88887643 44444 4789999999999999999985 888999999999999999999999999999999999999999
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC-----CceeEE----EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003279 723 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGS-----KGECIH----ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 792 (834)
Q Consensus 723 ~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~-----~~~~i~----~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iw 792 (834)
.|.+++.+||++.+++++ |.+|++||+.--. ..+.+. ..-.-...|.++.+|||+++|+++--|.+|+||
T Consensus 456 aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVy 535 (888)
T KOG0306|consen 456 AIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVY 535 (888)
T ss_pred ceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence 999999999999999999 9999999975311 111111 111235679999999999999999999999999
Q ss_pred ECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 793 NMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 793 dl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
-+++-+.. .+.+|.-+|.|+.++||+++++|||.|.+|+||
T Consensus 536 flDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 536 FLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred EecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence 99998876 899999999999999999999999999999999
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-28 Score=255.80 Aligned_cols=266 Identities=30% Similarity=0.538 Sum_probs=236.1
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
.++++++.|+.+.+|...... ....+.+|...|.++.|++++++|++++.||.|++||+.+
T Consensus 22 ~~l~~~~~~g~i~i~~~~~~~-------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 22 KLLATGSGDGTIKVWDLETGE-------------------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred CEEEEeecCcEEEEEEeeCCC-------------------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 678889999999999654331 3456678999999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 663 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 663 (834)
++.+..+..|...|.++.|++++.++++++.|+.|++||+.+.+ ....+..|...|.+++|+|++. ++++++.|+.|+
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~ 160 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTIK 160 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEeccCCCcEEEEEEcCcCC-EEEEEcCCCcEE
Confidence 88888898999999999999998899998889999999998654 3666778999999999999854 676777799999
Q ss_pred EEECCCCceeeEeecCC-CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C
Q 003279 664 YWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D 741 (834)
Q Consensus 664 lwDl~s~~~i~~~~~~~-~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-D 741 (834)
+||+++++.+..+..+. .+.++.|+|++..+++++.++.|++||++++..+..+..|...+.+++|++++.++++++ |
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 240 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCC
Confidence 99999888887777544 799999999999999999999999999999998888878999999999999999999998 9
Q ss_pred CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003279 742 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 793 (834)
Q Consensus 742 g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwd 793 (834)
+.|++||+.++ ..+..+..+...+.+++|++++.+|++++.|+.|++|+
T Consensus 241 ~~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 241 GTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEcCCc---eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999999876 66677778888999999999999999999999999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-29 Score=285.08 Aligned_cols=272 Identities=27% Similarity=0.441 Sum_probs=236.8
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
..+++++++.|+.+++|....... .....+.+|...|.+++|+||+++|++++.|++|+|||+
T Consensus 170 ~g~~l~~~~~~~~i~~~~~~~~~~-----------------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 170 DGRALAAASSDGLIRIWKLEGIKS-----------------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred CCCeEEEccCCCcEEEeecccccc-----------------hhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence 336789999999999996622210 234555899999999999999999999999999999999
Q ss_pred -CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC
Q 003279 582 -ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 660 (834)
Q Consensus 582 -~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg 660 (834)
..+..++++.+|...|++++|+|+++++++|+.|++|+|||+++++ ++..+.+|...|++++|++++. ++++++.|+
T Consensus 233 ~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~is~~~f~~d~~-~l~s~s~d~ 310 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDGISGLAFSPDGN-LLVSASYDG 310 (456)
T ss_pred cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCceEEEEECCCCC-EEEEcCCCc
Confidence 5668999999999999999999999999999999999999999854 6899999999999999999977 555778899
Q ss_pred cEEEEECCCCc--eeeEeecC--C-CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCC---EEEEEEcCC
Q 003279 661 EIRYWSINNGS--CAGVFKCQ--S-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ---VHSVCWNTS 732 (834)
Q Consensus 661 ~I~lwDl~s~~--~i~~~~~~--~-~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~---I~sl~~spd 732 (834)
.|++||+.++. +...+... . .+.++.|+|++.++++++.|+.+++||+..+.++..+.+|... +.+...++.
T Consensus 311 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (456)
T KOG0266|consen 311 TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTG 390 (456)
T ss_pred cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCC
Confidence 99999999998 45555432 2 5799999999999999999999999999999999999998875 344456789
Q ss_pred CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEE--cCCeEEEEECC
Q 003279 733 GEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIG--CYETLELWNMT 795 (834)
Q Consensus 733 g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-~~~I~svafspdg~~L~sgs--~dg~I~Iwdl~ 795 (834)
+.++++++ |+.|++||+.++ ..+..+..| ...+..+.+++...++++++ .|+.|++|...
T Consensus 391 ~~~i~sg~~d~~v~~~~~~s~---~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 391 GKLIYSGSEDGSVYVWDSSSG---GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCeEEEEeCCceEEEEeCCcc---chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 99999999 999999999986 677778888 88899999999999999988 67899999754
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=254.73 Aligned_cols=281 Identities=21% Similarity=0.263 Sum_probs=248.9
Q ss_pred EEecCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 546 QLIPASTSKVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSp---dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
.+..||+.+|..++||| +|-+|++++.|+.-.+-+-++|.-+.++.+|.+.|+..+++.+-..-++++.|-+-+|||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 34579999999999986 898999999999999999999999999999999999999999988999999999999999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-eeeEe-ecCCCeeEEEEecCCCEEEEEEcC
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVF-KCQSGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~-~i~~~-~~~~~i~~l~~sp~g~~ll~~s~d 700 (834)
.-++.. +..+. |..-|..++|+.|.+++| +|+.+..++|||++..+ +...+ .+.+.|..+.|....+.|++.+.|
T Consensus 88 a~tgde-lhsf~-hkhivk~~af~~ds~~ll-tgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd 164 (334)
T KOG0278|consen 88 AVTGDE-LHSFE-HKHIVKAVAFSQDSNYLL-TGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADD 164 (334)
T ss_pred hhhhhh-hhhhh-hhheeeeEEecccchhhh-ccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccC
Confidence 998775 55544 888899999999977555 99999999999998654 22333 356789999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003279 701 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 780 (834)
Q Consensus 701 g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L 780 (834)
+.|++||.+++..+.++. .+.+|+++.++++|++|.++..+.|++||..+. ..+..+.. ...|.+..++|+...+
T Consensus 165 ~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf---~~lKs~k~-P~nV~SASL~P~k~~f 239 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF---GLLKSYKM-PCNVESASLHPKKEFF 239 (334)
T ss_pred CceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccc---cceeeccC-ccccccccccCCCceE
Confidence 999999999999999987 678899999999999999988889999999887 44544443 4568899999999999
Q ss_pred EEEEcCCeEEEEECCCCeEEEe--ccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 781 LVIGCYETLELWNMTENKTLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 781 ~sgs~dg~I~Iwdl~~~~~~~l--~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++|+.|..++.||..+++.+.. .+|.++|.|+.|+|||...++|+.||+|+||.
T Consensus 240 VaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 240 VAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred EecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 9999999999999999998833 79999999999999999999999999999993
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-29 Score=248.17 Aligned_cols=282 Identities=17% Similarity=0.265 Sum_probs=250.6
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE--EeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEe
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD 622 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~--~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWD 622 (834)
+.+.+|...|.+++|+.+|..|++|+.|+++.||+++..+... ...+|.+.|-.++|+| ....|++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5677999999999999999999999999999999998776554 3468999999999998 467899999999999999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCe
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 702 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~ 702 (834)
++.++....+ ... ..=.-+.|+|+|. .++.++.|..|.+.|.++.+..........+..++|+.++..++.....|.
T Consensus 94 ~r~~k~~~~i-~~~-~eni~i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 94 IRSGKCTARI-ETK-GENINITWSPDGE-YIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred eccCcEEEEe-ecc-CcceEEEEcCCCC-EEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 9987754333 322 3334578999988 455788899999999999999988888888999999988888888888899
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 003279 703 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 781 (834)
Q Consensus 703 I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~ 781 (834)
|.|......+++..++.|.....||.|+|+|+|+|+|+ |-.+.+||+... .|++.+..+.-+|..+.|+.+|++|+
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL---iC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL---ICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh---hhheeeccccCceEEEEeccCcceee
Confidence 99999999999999999999999999999999999999 999999999876 78889999999999999999999999
Q ss_pred EEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecC---------CcEEEe
Q 003279 782 VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD---------KCVKIW 833 (834)
Q Consensus 782 sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~D---------G~I~IW 833 (834)
+++.|..|-|-++++|..+.-..++++...++|+|...+||-+++| |.|+||
T Consensus 248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred ccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 9999999999999999999888999999999999999999988765 567765
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=268.84 Aligned_cols=269 Identities=20% Similarity=0.295 Sum_probs=240.7
Q ss_pred cCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003279 500 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 579 (834)
Q Consensus 500 ~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IW 579 (834)
...+.++.++-..+.|.+|.-... ..++.+.-..-+|.++.|-.-.+++++|+.|..|+||
T Consensus 22 HPtePw~la~LynG~V~IWnyetq-------------------tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 22 HPTEPWILAALYNGDVQIWNYETQ-------------------TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVF 82 (794)
T ss_pred CCCCceEEEeeecCeeEEEecccc-------------------eeeeeeeecccchhhheeeeccceEEEecCCceEEEE
Confidence 334578888999999999954332 3456677777889999999999999999999999999
Q ss_pred eCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC
Q 003279 580 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 580 d~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 659 (834)
+..+++.+..++.|.+.|.||+.+|...+++|+|.|-+|++||.+..-.+..++.+|...|.+++|.|....-|++++-|
T Consensus 83 nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLD 162 (794)
T KOG0276|consen 83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLD 162 (794)
T ss_pred ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecc
Confidence 99999999999999999999999999999999999999999999988778899999999999999999999999999999
Q ss_pred CcEEEEECCCCceeeEeec-CCCeeEEEEecCC--CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEE
Q 003279 660 SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRL--GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL 736 (834)
Q Consensus 660 g~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g--~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~L 736 (834)
++|++|.+....+..++.. ..+|+|++|-+.+ .++++|+.|..|+|||..+..|+.++.+|...|..++|+|.-.++
T Consensus 163 rTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpii 242 (794)
T KOG0276|consen 163 RTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPII 242 (794)
T ss_pred ccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEE
Confidence 9999999999988888875 6679999998854 689999999999999999999999999999999999999999999
Q ss_pred EEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003279 737 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 790 (834)
Q Consensus 737 asgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~ 790 (834)
++|+ ||+|+||+..+- +....+.-....+++++-.+.+..+++|..+|.|.
T Consensus 243 isgsEDGTvriWhs~Ty---~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 243 ISGSEDGTVRIWNSKTY---KLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred EEecCCccEEEecCcce---ehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence 9999 999999998876 45556666678899999988888888877776543
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-30 Score=260.14 Aligned_cols=280 Identities=23% Similarity=0.354 Sum_probs=245.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe--------ccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--------EEHTQWITDVRFSPSLSRLATSSADRTVRVW 621 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l--------~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 621 (834)
+...-+.|..|||||.||++|+.||.|.|||..+|+....+ --+..+|.|++|+.|...||+|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 44556889999999999999999999999999998876554 3578899999999999999999999999999
Q ss_pred ecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC-CCeeEEEEecCCCEEEEEEcC
Q 003279 622 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 622 Dl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~-~~i~~l~~sp~g~~ll~~s~d 700 (834)
.+.++.+..+.-..|+..|+|+.|+.|+..++ +++.|.++++.-+.+|++++.+..+ +-|+...|.++|.++++++.|
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 99998864344458999999999999988766 8999999999999999999999864 458999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEeC--CCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCceeEEEeec---CCCceEEEEE
Q 003279 701 NYISILDVETQVCRLKLQG--HKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSC---TGNKFHSCVF 773 (834)
Q Consensus 701 g~I~iwDl~t~~~~~~l~~--h~~~I~sl~~spd-g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~---~~~~I~svaf 773 (834)
|+|++|+.++.+|+.+++. ...+|.++..-|. -..+++|. .++|+|.++.. ..+..+.. .++.+.++++
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----QvVrsfsSGkREgGdFi~~~l 445 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----QVVRSFSSGKREGGDFINAIL 445 (508)
T ss_pred ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----eEEeeeccCCccCCceEEEEe
Confidence 9999999999999988875 4557888887774 45666777 88999999865 35555443 4577889999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 774 HPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 774 spdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+|.|.++++.+.|+.++.|.+.+|+.. .+..|+..|..++-+|..+.||+-+.||.+++|+
T Consensus 446 SpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 446 SPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999999999999877 6778999999999999999999999999999996
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=265.59 Aligned_cols=282 Identities=20% Similarity=0.341 Sum_probs=247.0
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
...+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..+.|+.+.|.++++++++++.|+.+++|+
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 35677899999999999998999999999999999987666 6788889999999999999999999999999999999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCe
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 702 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~ 702 (834)
++.... ..++.+|.+.|+++.|...... +++|+.|.+|++||+....|.+++-..+.+..|+.. ...++++..|+.
T Consensus 248 vd~~r~-~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~Dkk 323 (459)
T KOG0288|consen 248 VDSLRL-RHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKK 323 (459)
T ss_pred ccchhh-hhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccc
Confidence 998664 7889999999999999876544 779999999999999999999888877777777776 356788888999
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC----CCceEEEEEeCCC
Q 003279 703 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT----GNKFHSCVFHPTF 777 (834)
Q Consensus 703 I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~----~~~I~svafspdg 777 (834)
|++||.++..++.....+. .|+++..++++..|.+++ |+++.++|+++. .....+... ....+.++|||++
T Consensus 324 vRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~---eI~~~~sA~g~k~asDwtrvvfSpd~ 399 (459)
T KOG0288|consen 324 VRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK---EIRQTFSAEGFKCASDWTRVVFSPDG 399 (459)
T ss_pred eEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccc---cEEEEeeccccccccccceeEECCCC
Confidence 9999999999999988665 999999999999999888 999999999987 444444432 2447889999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEE-ecc-CC-CCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 778 PSLLVIGCYETLELWNMTENKTLT-LSA-HD-KLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 778 ~~L~sgs~dg~I~Iwdl~~~~~~~-l~~-h~-~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.|+++|+.||.|+||++.++++.. +.. +. ..|++++|+|.|..|++++.++.+.+|.
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999999999999999873 332 22 3699999999999999999999999994
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=276.43 Aligned_cols=282 Identities=21% Similarity=0.360 Sum_probs=249.5
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC
Q 003279 548 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 627 (834)
Q Consensus 548 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~ 627 (834)
+...+..|..++|+|...+++++-..|.|.+||..=+.++..|.+|.++|..|+|+|...++++|+.|..|+||++.+.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 44566789999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCC-CeeEEEEecCCCEEEEEEcCCeEEEE
Q 003279 628 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISIL 706 (834)
Q Consensus 628 ~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~-~i~~l~~sp~g~~ll~~s~dg~I~iw 706 (834)
++.++.+|-+.|..+.|++.-.. ++++++|-+|+||+..+++++..+..+. -|.|..|+|....+++++-|-+|+||
T Consensus 85 -clftL~GHlDYVRt~~FHheyPW-IlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 85 -CLFTLLGHLDYVRTVFFHHEYPW-ILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred -ehhhhccccceeEEeeccCCCce-EEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 58899999999999999999775 5599999999999999999999998654 59999999999999999999999999
Q ss_pred ECCCC-----------------------------eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce
Q 003279 707 DVETQ-----------------------------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 756 (834)
Q Consensus 707 Dl~t~-----------------------------~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~ 756 (834)
|+..- .....+++|...|+-++|+|.-.+|++|+ |..|++|.+...+. -
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa-W 241 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-W 241 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc-e
Confidence 98521 12345678999999999999999999999 78999999876533 4
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 757 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 757 ~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
.+.+..+|.+.|.++.|+|....|++.+.|++|+|||+...+.+ .+....+..+.++.+|..+++|+|-+.| +.||
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG-m~VF 318 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG-MIVF 318 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCc-eEEE
Confidence 56677889999999999999999999999999999999998877 5666678899999999999888775444 5554
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-28 Score=243.86 Aligned_cols=267 Identities=20% Similarity=0.342 Sum_probs=231.7
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
.++++|+.|..|.+|...++.+. +..+++|.+.|..+.|.+|+..|++++.|++|+.||+++
T Consensus 60 s~~aSgG~Dr~I~LWnv~gdceN------------------~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 60 SCFASGGSDRAIVLWNVYGDCEN------------------FWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred CeEeecCCcceEEEEeccccccc------------------eeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 68899999999999976655332 456679999999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 662 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 662 (834)
|+.++.+++|.+.|+.+.-+.-| .++.+++.|++++|||+++... +.++. ....++++.|...+..++ +|+-|+.|
T Consensus 122 G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-~~t~~-~kyqltAv~f~d~s~qv~-sggIdn~i 198 (338)
T KOG0265|consen 122 GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-IKTFE-NKYQLTAVGFKDTSDQVI-SGGIDNDI 198 (338)
T ss_pred ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-hhccc-cceeEEEEEeccccccee-eccccCce
Confidence 99999999999999999854434 4677889999999999997543 44443 457799999998877655 89999999
Q ss_pred EEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC----eEEEEEeCCCC----CEEEEEEcCCC
Q 003279 663 RYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ----VCRLKLQGHKN----QVHSVCWNTSG 733 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~----~~~~~l~~h~~----~I~sl~~spdg 733 (834)
++||++.+....++.. .+.|+.+..+++|.++++-+.|.++++||++-. .++..+.+|.. ....++|+|++
T Consensus 199 kvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~ 278 (338)
T KOG0265|consen 199 KVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG 278 (338)
T ss_pred eeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC
Confidence 9999999999998885 567999999999999999999999999999853 56777777533 34578999999
Q ss_pred CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 734 EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 734 ~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
.++.+++ |..+++||..+. .++..+.+|.+.|.++.|+|..++|.+++.|.+|++=++
T Consensus 279 ~~i~ags~dr~vyvwd~~~r---~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 279 TKITAGSADRFVYVWDTTSR---RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred CccccccccceEEEeecccc---cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 9999999 999999999876 789999999999999999999999999999999987543
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-30 Score=261.84 Aligned_cols=266 Identities=20% Similarity=0.406 Sum_probs=228.5
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
+..+++|..|.+|++|+..+- ...+.+.||++.|.|+.|. .+.|++|+.|.+|+|||+.
T Consensus 207 D~kiVSGlrDnTikiWD~n~~-------------------~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~ 265 (499)
T KOG0281|consen 207 DEKIVSGLRDNTIKIWDKNSL-------------------ECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVN 265 (499)
T ss_pred chhhhcccccCceEEeccccH-------------------HHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEecc
Confidence 456789999999999955433 3456788999999999996 5699999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc--eeeeeccCCCCeEEEEEccCCCcEEEEEeCCC
Q 003279 583 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 660 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~--~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg 660 (834)
+++++.++-+|.+.|..+.|+. .+++|+|.|.+|.+||+..+.. ..+.+.+|...|+.+.|+ ..++++++.|.
T Consensus 266 tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDR 340 (499)
T KOG0281|consen 266 TGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDR 340 (499)
T ss_pred CCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCc
Confidence 9999999999999999999974 5999999999999999987653 236778999999999998 34888999999
Q ss_pred cEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 003279 661 EIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 661 ~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasg 739 (834)
+|++|++.++++++++.. ..+|.|+.+ .++.+++|++|.+|++||+..|.++..+++|+.-|.|+.|+ .+.+++|
T Consensus 341 TikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSG 416 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSG 416 (499)
T ss_pred eEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeec
Confidence 999999999999999875 455777665 46889999999999999999999999999999999999995 6678888
Q ss_pred e-CCeEEEEEcCCCCCc------eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 740 S-DELVRVWSIGSGSKG------ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 740 s-Dg~I~IwDl~s~~~~------~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
. ||+|+|||+..+... .|+..+..|.+.|..+.|.. ..|++++.|.+|.|||..++...
T Consensus 417 aYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~--fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 417 AYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE--FQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred cccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc--eEEEeccCCCeEEEEEcCCCCcc
Confidence 8 999999999876432 25666777888999999864 46889999999999999877654
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=238.98 Aligned_cols=270 Identities=21% Similarity=0.379 Sum_probs=220.6
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEe-cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l-~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
..++++++.|+.|++|.... +.++.....+ .+|+..|.+|+|+|.|++||+|+.|.++.||.-
T Consensus 27 g~ilAscg~Dk~vriw~~~~----------------~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k 90 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSS----------------GDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKK 90 (312)
T ss_pred ceEEEeecCCceEEEEecCC----------------CCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeec
Confidence 35899999999999996543 1123344444 489999999999999999999999999999975
Q ss_pred C--CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC--ceeeeeccCCCCeEEEEEccCCCcEEEEEe
Q 003279 582 E--SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 657 (834)
Q Consensus 582 ~--t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~--~~i~~~~~h~~~V~sl~fspdg~~llasgs 657 (834)
. +.+++.++++|...|.|++|+++|.+||||+.|+.|.||.+..+. .+...+..|...|..+.|+|... +|++++
T Consensus 91 ~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~S 169 (312)
T KOG0645|consen 91 EDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCS 169 (312)
T ss_pred CCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeEEec
Confidence 5 457889999999999999999999999999999999999998443 35678899999999999999844 888999
Q ss_pred CCCcEEEEECC-C--CceeeEeecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCC
Q 003279 658 NNSEIRYWSIN-N--GSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG 733 (834)
Q Consensus 658 ~Dg~I~lwDl~-s--~~~i~~~~~~-~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg 733 (834)
.|.+|++|+-. . ..++.++..+ ..+.+++|++.|..+++++.|++|+||-..+.-. ..|...++.+.|. .
T Consensus 170 YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~--~ 243 (312)
T KOG0645|consen 170 YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD--N 243 (312)
T ss_pred cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEeeeec--c
Confidence 99999999876 2 3567777654 4799999999999999999999999998663211 1278899999998 4
Q ss_pred CEEEEEe-CCeEEEEEcCCCCC---ce-eEEEeecCCCceEEEEEeCC-CCEEEEEEcCCeEEEEECC
Q 003279 734 EYLASVS-DELVRVWSIGSGSK---GE-CIHELSCTGNKFHSCVFHPT-FPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 734 ~~Lasgs-Dg~I~IwDl~s~~~---~~-~i~~~~~~~~~I~svafspd-g~~L~sgs~dg~I~Iwdl~ 795 (834)
..|++++ |+.|++|....... .+ ....-..|...|+++.|.|. ...|++++.||.|++|.+.
T Consensus 244 ~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 244 GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 4566666 99999998765311 11 12234568889999999995 6789999999999999864
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-27 Score=240.35 Aligned_cols=282 Identities=22% Similarity=0.297 Sum_probs=237.7
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC--CCeEEEE
Q 003279 544 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 621 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~--Dg~I~IW 621 (834)
..+.++.-.+.|+++.|+++|.+|++++.|.+|+|||..+++.+.++..+...|..++|......++.++. |.+|+..
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 34455566788999999999999999999999999999999999999999899999999888778877776 8899999
Q ss_pred ecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCC
Q 003279 622 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 701 (834)
Q Consensus 622 Dl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg 701 (834)
++.+.++ ++.+.||...|++|+.+|-++ .+++++.|++|++||++..+|...+.. ..-..++|+|.|-.++++...+
T Consensus 86 sl~dNky-lRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~-~~~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 86 SLHDNKY-LRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNL-SGRPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred EeecCce-EEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEec-CCCcceeECCCCcEEEEecCCC
Confidence 9998776 999999999999999999975 666999999999999998888877765 4456689999988888888888
Q ss_pred eEEEEECCCC--eEEEEEe---CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCC---ceEEEE
Q 003279 702 YISILDVETQ--VCRLKLQ---GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN---KFHSCV 772 (834)
Q Consensus 702 ~I~iwDl~t~--~~~~~l~---~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~---~I~sva 772 (834)
.|++||++.- .+..++. +.....+.+.|+|||++|+.+. .+.+++.|.-+| ..+..+..+.. ....++
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G---~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG---TVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC---cEeeeEeeccCCCCcceeEE
Confidence 9999999863 2333332 3466789999999999999888 789999999988 45555544432 337889
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEE-Eecc-CCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 773 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 773 fspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~-h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
|+||+++|++++.||+|.+|++++++.+ .+.+ +.+++.++.|.|.-.++++++ ..+.+|
T Consensus 240 ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw 300 (311)
T KOG1446|consen 240 FTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFW 300 (311)
T ss_pred ECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEE
Confidence 9999999999999999999999999888 5555 789999999999877777664 467777
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-28 Score=246.08 Aligned_cols=288 Identities=25% Similarity=0.383 Sum_probs=240.9
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC------------------CeEEEEeccCCCCeEEEEECC
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------------------FTVKSTLEEHTQWITDVRFSP 604 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t------------------~~~~~~l~~h~~~I~~l~fsp 604 (834)
.+...+..|..++.+.+|++||.++|+|+.|..|+|.|++. .-.++++..|.+.|+++.|+|
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 34566789999999999999999999999999999999761 135678889999999999999
Q ss_pred CCCEEEEEeCCCeEEEEecCCCCce-eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee----cC
Q 003279 605 SLSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQ 679 (834)
Q Consensus 605 dg~~Latgs~Dg~I~IWDl~s~~~~-i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~----~~ 679 (834)
...+|++++.|++|++||+...... .........+|.+|.|+|.|++++ .|..-..+++||+++.+|...-. +.
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCcccccc
Confidence 9999999999999999999864321 112223567899999999988555 77778899999999988776543 35
Q ss_pred CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC-CC-CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce
Q 003279 680 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 756 (834)
Q Consensus 680 ~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~-h~-~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~ 756 (834)
+.|+++.+++.++..++++.||.|++||--+++|+.++.. |. ..|.+..|..+++||++.+ |..|++|.+.++ +
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~---R 338 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG---R 338 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC---c
Confidence 6799999999999999999999999999999999988864 54 4789999999999999988 999999999998 7
Q ss_pred eEEEeecCCC-----ceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEE--EeccCCCCeEEEEEeCCCCEEEEEecCC
Q 003279 757 CIHELSCTGN-----KFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDK 828 (834)
Q Consensus 757 ~i~~~~~~~~-----~I~svafspdg~~L~sgs~-dg~I~Iwdl~~~~~~--~l~~h~~~V~~lafspdg~~LaSgs~DG 828 (834)
++.++.+.+. --+...|.....+++.-.. .+.+.-||.++...+ .-.+|.+.+..+.-+|.+.-+++|++|-
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 7777765421 1234567777777776655 348999999988766 3458999999999999999999999999
Q ss_pred cEEEeC
Q 003279 829 CVKIWK 834 (834)
Q Consensus 829 ~I~IWd 834 (834)
.+++|.
T Consensus 419 raRFWy 424 (430)
T KOG0640|consen 419 RARFWY 424 (430)
T ss_pred eeeeee
Confidence 999993
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=247.00 Aligned_cols=280 Identities=18% Similarity=0.290 Sum_probs=240.5
Q ss_pred CCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 003279 495 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK 574 (834)
Q Consensus 495 ~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg 574 (834)
-...++..+.|+++|+.|+++++|+.... ....++.||...|..+++|+-..||++++.|+
T Consensus 155 r~vavdP~n~wf~tgs~DrtikIwDlatg-------------------~LkltltGhi~~vr~vavS~rHpYlFs~gedk 215 (460)
T KOG0285|consen 155 RSVAVDPGNEWFATGSADRTIKIWDLATG-------------------QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDK 215 (460)
T ss_pred EEEeeCCCceeEEecCCCceeEEEEcccC-------------------eEEEeecchhheeeeeeecccCceEEEecCCC
Confidence 34455677899999999999999955433 34567889999999999999999999999999
Q ss_pred cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEE
Q 003279 575 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 654 (834)
Q Consensus 575 ~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~lla 654 (834)
.|+.||++..+.++.+.+|-..|.|++.+|.-+.|+||+.|.+++|||+++.. .+..+.+|..+|..+.+.|.+.. ++
T Consensus 216 ~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~V~~V~~~~~dpq-vi 293 (460)
T KOG0285|consen 216 QVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNPVASVMCQPTDPQ-VI 293 (460)
T ss_pred eeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCcceeEEeecCCCc-eE
Confidence 99999999999999999999999999999999999999999999999999854 58999999999999999988664 55
Q ss_pred EEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCC
Q 003279 655 SCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG 733 (834)
Q Consensus 655 sgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg 733 (834)
+|+.|++|++||++.++...++.+ ...+.+++.+|....|++++ ...|+-|++..+..+..+.+|...|.+++.+.|+
T Consensus 294 t~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~ 372 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-PDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG 372 (460)
T ss_pred EecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-CccceeccCCccchhhccccccceeeeeeeccCc
Confidence 999999999999999998887775 45699999999866655555 4678999999999999999999999999999888
Q ss_pred CEEEEEeCCeEEEEEcCCCCCceeEEEeec-----CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 734 EYLASVSDELVRVWSIGSGSKGECIHELSC-----TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 734 ~~LasgsDg~I~IwDl~s~~~~~~i~~~~~-----~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
-+++.+..|.+.+||.+++........... ....|.+.+|...|..|+++..|.+|++|.-++
T Consensus 373 v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 666555588999999999865444433222 245689999999999999999999999997544
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=247.23 Aligned_cols=278 Identities=21% Similarity=0.326 Sum_probs=235.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCC---CEEEEEeCCCeEEEEecCCC
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg---~~Latgs~Dg~I~IWDl~s~ 626 (834)
-|.+.|.++... +++|++|++||.++|||. .|+....+.+|.++|.+++|.-.. ..|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 488889988887 779999999999999994 578899999999999988886533 35999999999999999876
Q ss_pred Ccee---eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC-------------------------ceeeEee-
Q 003279 627 DYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-------------------------SCAGVFK- 677 (834)
Q Consensus 627 ~~~i---~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~-------------------------~~i~~~~- 677 (834)
...+ ....+|...|-+++..+++. .+++|+.|..|.+|+..+. .++..+.
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 5432 33458999999999999976 6779999999999993211 1122222
Q ss_pred cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce
Q 003279 678 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 756 (834)
Q Consensus 678 ~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~ 756 (834)
|...|.++.|++ ...+++++.|.+|++||+.++.++.++. ....+.|+..+|..++|++|+ |..|++||-+++....
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 345688899988 6889999999999999999999988887 456899999999999999999 9999999999987767
Q ss_pred eEEEeecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCCCe-EE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 757 CIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTENK-TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 757 ~i~~~~~~~~~I~svafspdg~~-L~sgs~dg~I~Iwdl~~~~-~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
....+.+|.+.|.++.|+|...+ |++++.|+++++||+++.+ ++ .+.+|...|.++.|. ++.+|++|+.|.+|+|+
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIF 415 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEe
Confidence 78889999999999999998765 6678889999999999876 44 888999999999996 46799999999999997
Q ss_pred C
Q 003279 834 K 834 (834)
Q Consensus 834 d 834 (834)
+
T Consensus 416 ~ 416 (423)
T KOG0313|consen 416 K 416 (423)
T ss_pred c
Confidence 4
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-26 Score=282.71 Aligned_cols=284 Identities=14% Similarity=0.226 Sum_probs=224.7
Q ss_pred CCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCC
Q 003279 496 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDK 574 (834)
Q Consensus 496 ~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg 574 (834)
...++....++++|+.|+.|++|........ . .... .....+. +...|.+++|++ ++.+||+++.||
T Consensus 488 ~i~fs~dg~~latgg~D~~I~iwd~~~~~~~----~------~~~~-~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg 555 (793)
T PLN00181 488 AIGFDRDGEFFATAGVNKKIKIFECESIIKD----G------RDIH-YPVVELA-SRSKLSGICWNSYIKSQVASSNFEG 555 (793)
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCccccc----c------cccc-cceEEec-ccCceeeEEeccCCCCEEEEEeCCC
Confidence 3444555688999999999999965331100 0 0000 0112233 346799999987 478999999999
Q ss_pred cEEEEeCCCCeEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEE
Q 003279 575 KAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 653 (834)
Q Consensus 575 ~I~IWd~~t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~ll 653 (834)
+|+|||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.|++|++||+.++.. +..+..+ ..|.++.|++....+|
T Consensus 556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~~~-~~v~~v~~~~~~g~~l 633 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTIKTK-ANICCVQFPSESGRSL 633 (793)
T ss_pred eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEEecC-CCeEEEEEeCCCCCEE
Confidence 999999999999999999999999999997 789999999999999999987653 5555544 6799999976656688
Q ss_pred EEEeCCCcEEEEECCCCc-eeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC------CeEEEEEeCCCCCEE
Q 003279 654 CSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET------QVCRLKLQGHKNQVH 725 (834)
Q Consensus 654 asgs~Dg~I~lwDl~s~~-~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t------~~~~~~l~~h~~~I~ 725 (834)
++|+.||.|++||+++.+ .+..+. +...|.++.|. ++.+|++++.|+.|++||++. ..++..+.+|...+.
T Consensus 634 atgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~ 712 (793)
T PLN00181 634 AFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKN 712 (793)
T ss_pred EEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCee
Confidence 899999999999998765 344443 45679999997 678999999999999999974 356788999999999
Q ss_pred EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcee--------E--EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 726 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC--------I--HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 726 sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~--------i--~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
+++|++++.+|++|+ |+.|++|+......... + .....+...|.+++|++++..|++++.+|.|+||++
T Consensus 713 ~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 713 FVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999 99999999865421100 0 011234567999999999999999999999999996
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=272.13 Aligned_cols=249 Identities=21% Similarity=0.323 Sum_probs=207.1
Q ss_pred eeeEEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC--------------------------------C---
Q 003279 541 TFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--------------------------------F--- 584 (834)
Q Consensus 541 ~~~~~~~l~-gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t--------------------------------~--- 584 (834)
.+.....+. +|.+.|+++.||+||+|||+||.|+.|+||.+.. .
T Consensus 255 al~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 255 ALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISS 334 (712)
T ss_pred eeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccc
Confidence 334455666 9999999999999999999999999999996543 0
Q ss_pred -------------------------eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCC
Q 003279 585 -------------------------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT 639 (834)
Q Consensus 585 -------------------------~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~ 639 (834)
+++..+.+|.+.|.+|.|+.+ .+|+++|.|++|++|++.... ++..|. |.+.
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~-CL~~F~-Hndf 411 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE-CLKVFS-HNDF 411 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcc-eeeEEe-cCCe
Confidence 112234689999999999965 589999999999999999644 566665 9999
Q ss_pred eEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 003279 640 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 719 (834)
Q Consensus 640 V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~ 719 (834)
|+||+|+|..+.+|++|+-||.|+||++...+.+.......-|++++|.|+|.+.++|+.+|.+++|+....+....+.-
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 99999999999999999999999999999999998888889999999999999999999999999999998766544321
Q ss_pred --C------CCCEEEEEEcCCC--CEEEEEeCCeEEEEEcCCCCCceeEEEeecCC--CceEEEEEeCCCCEEEEEEcCC
Q 003279 720 --H------KNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKGECIHELSCTG--NKFHSCVFHPTFPSLLVIGCYE 787 (834)
Q Consensus 720 --h------~~~I~sl~~spdg--~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~--~~I~svafspdg~~L~sgs~dg 787 (834)
| ...|+.+.|.|.. ++|++..|..|+|||.+.. ..+..+++.. ..-....|+.||++|++++.|.
T Consensus 492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs 568 (712)
T KOG0283|consen 492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS 568 (712)
T ss_pred eeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---hhhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence 1 2279999998744 3666666999999999776 4555555432 3346778999999999999999
Q ss_pred eEEEEECC
Q 003279 788 TLELWNMT 795 (834)
Q Consensus 788 ~I~Iwdl~ 795 (834)
.|+||++.
T Consensus 569 ~VYiW~~~ 576 (712)
T KOG0283|consen 569 WVYIWKND 576 (712)
T ss_pred eEEEEeCC
Confidence 99999973
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-29 Score=255.88 Aligned_cols=283 Identities=16% Similarity=0.303 Sum_probs=238.3
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 003279 541 TFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 619 (834)
Q Consensus 541 ~~~~~~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~ 619 (834)
.-..+..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+....+..++..|.+.|..|++.. ..+++++.|++|+
T Consensus 55 akPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK 132 (433)
T KOG0268|consen 55 AKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVK 132 (433)
T ss_pred hccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCccee
Confidence 334567889999999999999977 6899999999999999999999999999999999999976 6899999999999
Q ss_pred EEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC-CCeeEEEEecCCCEEEEEE
Q 003279 620 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAA 698 (834)
Q Consensus 620 IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~-~~i~~l~~sp~g~~ll~~s 698 (834)
.|.++.+ ++.++.+ ...+..|+-+..+ ..+++|+. .|.|||..-..++..+... ..+.++.|+|....|++++
T Consensus 133 ~wk~~~~--p~~tilg-~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 133 QWKIDGP--PLHTILG-KSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASC 206 (433)
T ss_pred eeeccCC--cceeeec-ccccccccccccc-ccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeee
Confidence 9999863 4555553 4557777766553 47778864 5899999988888888864 5599999999776665555
Q ss_pred -cCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC
Q 003279 699 -IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 776 (834)
Q Consensus 699 -~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspd 776 (834)
+|+.|.+||++...++..+. -...-+.|||+|.+..+++++ |..++.||++... .++.....|...|.++.|+|.
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfspt 283 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPT 283 (433)
T ss_pred ccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCCC
Confidence 89999999999998877665 344567899999777777777 8899999999764 677788899999999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEec--cCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 777 FPSLLVIGCYETLELWNMTENKTLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 777 g~~L~sgs~dg~I~Iwdl~~~~~~~l~--~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|..+++|+.|.+|+||.+..+....+. .--..|.|+.||.|.++|++||+|+.|++|+
T Consensus 284 G~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 284 GQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred cchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 999999999999999999887665332 2235699999999999999999999999996
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=245.65 Aligned_cols=270 Identities=20% Similarity=0.344 Sum_probs=231.8
Q ss_pred cCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCC---EEEEEeCCCcE
Q 003279 500 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK---LLATGGHDKKA 576 (834)
Q Consensus 500 ~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~---~Lasgs~Dg~I 576 (834)
.....++.+|+.|+.+++|.... .....+.||+++|.+++|..... .|++++.|.++
T Consensus 112 ~~~~~~IltgsYDg~~riWd~~G--------------------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl 171 (423)
T KOG0313|consen 112 KGASKWILTGSYDGTSRIWDLKG--------------------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTL 171 (423)
T ss_pred cccCceEEEeecCCeeEEEecCC--------------------ceEEEEecCCcceeeeEEEecCCccceEEEecCCceE
Confidence 33478999999999999995533 24678889999999888855333 59999999999
Q ss_pred EEEeCCCCeEE----EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC------------------------Cc
Q 003279 577 VLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP------------------------DY 628 (834)
Q Consensus 577 ~IWd~~t~~~~----~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~------------------------~~ 628 (834)
++|-++.++.+ ....+|...|-+|...+++..+++||.|.+|.||+.... +.
T Consensus 172 ~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 172 RLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT 251 (423)
T ss_pred EEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence 99988876544 334599999999999999999999999999999993311 13
Q ss_pred eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 003279 629 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV 708 (834)
Q Consensus 629 ~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl 708 (834)
++.++.+|..+|.++.|++ ...+++++.|.+|+.||+.++.++..+..+..+.|+.++|..+.|++|+.|..|++||.
T Consensus 252 P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 252 PLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred ceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCC
Confidence 4667889999999999998 34788999999999999999999999999999999999999999999999999999999
Q ss_pred CCC---eEEEEEeCCCCCEEEEEEcCCCCE-EEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003279 709 ETQ---VCRLKLQGHKNQVHSVCWNTSGEY-LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 709 ~t~---~~~~~l~~h~~~I~sl~~spdg~~-Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sg 783 (834)
+++ .....|.+|.+.|.++.|+|...+ |++++ |+++++||+++.. .++..+..|...|.++.|... ..|++|
T Consensus 330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k--~plydI~~h~DKvl~vdW~~~-~~IvSG 406 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK--APLYDIAGHNDKVLSVDWNEG-GLIVSG 406 (423)
T ss_pred CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC--CcceeeccCCceEEEEeccCC-ceEEec
Confidence 976 456788999999999999997765 55566 9999999999873 488899999999999999854 479999
Q ss_pred EcCCeEEEEEC
Q 003279 784 GCYETLELWNM 794 (834)
Q Consensus 784 s~dg~I~Iwdl 794 (834)
+.|.+|+|+.-
T Consensus 407 GaD~~l~i~~~ 417 (423)
T KOG0313|consen 407 GADNKLRIFKG 417 (423)
T ss_pred cCcceEEEecc
Confidence 99999999864
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-26 Score=263.35 Aligned_cols=249 Identities=16% Similarity=0.209 Sum_probs=203.8
Q ss_pred EeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCCCc-------eeeeeccCCCCeE
Q 003279 570 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY-------SLRTFTGHSTTVM 641 (834)
Q Consensus 570 gs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~s~~~-------~i~~~~~h~~~V~ 641 (834)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.+... ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 567889999998888888899999999999999996 78999999999999999976431 2346788999999
Q ss_pred EEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC
Q 003279 642 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK 721 (834)
Q Consensus 642 sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~ 721 (834)
+++|+|++..++++++.|+.|++||++++..+..+.+...|.+++|+++|..|++++.|+.|+|||++++..+..+.+|.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 99999998888889999999999999999888877777889999999999999999999999999999999999999998
Q ss_pred CCEEEE-----EEcCCCCEEEEEe-CC----eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003279 722 NQVHSV-----CWNTSGEYLASVS-DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 791 (834)
Q Consensus 722 ~~I~sl-----~~spdg~~Lasgs-Dg----~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~I 791 (834)
+.+.+. .|++++.+|++++ |+ .|+|||++..........+..+...+......+++.++++|+.|+.|++
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence 765432 3458888888876 53 7999999964322222233333344444445566888899999999999
Q ss_pred EECCCCeEEEe--ccCCCCeEEEEEeCCC
Q 003279 792 WNMTENKTLTL--SAHDKLVSSLAASTVN 818 (834)
Q Consensus 792 wdl~~~~~~~l--~~h~~~V~~lafspdg 818 (834)
|++..+....+ ..+..++.+++|.|..
T Consensus 290 ~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 290 YQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEccCCcEEeecccccCCCccceEEcccc
Confidence 99988765433 3466788999999964
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=263.23 Aligned_cols=248 Identities=18% Similarity=0.299 Sum_probs=220.2
Q ss_pred CeEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 003279 584 FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 662 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 662 (834)
.+.+.++.+|+..|+++.|.| .+.+|++++.|+.|+||++.....+++++.+|..+|.+++|+.+|..+| +++.|+.|
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fL-S~sfD~~l 282 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFL-SASFDRFL 282 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeee-eeecceee
Confidence 355678899999999999999 7899999999999999999987778999999999999999999988666 99999999
Q ss_pred EEEECCCCceeeEeecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-
Q 003279 663 RYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 740 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~~~~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs- 740 (834)
++||+++|+++..+.....++|+.|+|++ +.|++|+.|+.|+.||+++++.+.++..|-+.|..+.|-++|+.+++++
T Consensus 283 KlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 99999999999999999999999999998 8899999999999999999999999999999999999999999999998
Q ss_pred CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE----EeccCC--CCeEEEEE
Q 003279 741 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL----TLSAHD--KLVSSLAA 814 (834)
Q Consensus 741 Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~----~l~~h~--~~V~~laf 814 (834)
|+.++||+.+.....+.+.. .+.....+|..+|+++++++-+.|+.|.+|.+...-.+ .+.+|. +.-..+.|
T Consensus 363 dks~riWe~~~~v~ik~i~~--~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIAD--PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred CccEEEEEcCCCccchhhcc--hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 88999999988744333332 33455678899999999999999999999987554332 555664 55677899
Q ss_pred eCCCCEEEEEecCCcEEEeC
Q 003279 815 STVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 815 spdg~~LaSgs~DG~I~IWd 834 (834)
||||++|++|+.||.|.+||
T Consensus 441 SpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred cCCCCeEEeecCCccEEEee
Confidence 99999999999999999997
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=235.54 Aligned_cols=277 Identities=21% Similarity=0.341 Sum_probs=229.9
Q ss_pred EEEEEcC-CCCEEEEEe-------CCCcEEEEeCCCCeEEEEe--ccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecC
Q 003279 556 ESCHFSP-DGKLLATGG-------HDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 556 ~sl~fSp-dg~~Lasgs-------~Dg~I~IWd~~t~~~~~~l--~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~ 624 (834)
.++.||| -..+||++. ..|++.|.++...+-+..+ ..-.+.+.+++|+++ ...+++++.||+++|||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 5788998 223444432 3689999998644433332 235678999999995 5688999999999999998
Q ss_pred CCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecC-CCEEEEEEcCCe
Q 003279 625 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPR-LGRILAAAIENY 702 (834)
Q Consensus 625 s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~-g~~ll~~s~dg~ 702 (834)
....++..++.|...|.++.|++..+..+++++.|++|++|+......+.++.. ...|....|+|. .+.+++++.|+.
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 888899999999999999999998888888999999999999999999999886 455889999995 567888889999
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CE
Q 003279 703 ISILDVETQVCRLKLQGHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PS 779 (834)
Q Consensus 703 I~iwDl~t~~~~~~l~~h~~~I~sl~~spd-g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg-~~ 779 (834)
+++||++..-....+..|...|.|+.|+.- ...|++++ |+.|++||+++-. .++.++.+|.-.|..+.|+|.. ..
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh~~AVRkvk~Sph~~~l 249 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGHGLAVRKVKFSPHHASL 249 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCCceEEEEEecCcchhhH
Confidence 999999976444558889999999999984 45677777 9999999999875 5788899999999999999976 45
Q ss_pred EEEEEcCCeEEEEECCCCeEE--EeccCCCCeEEEEEeC-CCCEEEEEecCCcEEEeC
Q 003279 780 LLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK 834 (834)
Q Consensus 780 L~sgs~dg~I~Iwdl~~~~~~--~l~~h~~~V~~lafsp-dg~~LaSgs~DG~I~IWd 834 (834)
|++++.|-+++|||.....-. +...|...|..+.|++ +..++|+++.|+.++||+
T Consensus 250 LaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred hhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 677788889999998865433 6668899999999998 456999999999999996
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=250.61 Aligned_cols=271 Identities=20% Similarity=0.310 Sum_probs=233.7
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
.++|+++.|.+.-+|....+. .+....++.+|..+|.-+.||||.++|++++.|..+.+||+.+
T Consensus 237 kyLAsaSkD~Taiiw~v~~d~----------------~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t 300 (519)
T KOG0293|consen 237 KYLASASKDSTAIIWIVVYDV----------------HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT 300 (519)
T ss_pred eeEeeccCCceEEEEEEecCc----------------ceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCc
Confidence 799999999999999554331 2567889999999999999999999999999999999999999
Q ss_pred CeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccC-CCCeEEEEEccCCCcEEEEEeCCCc
Q 003279 584 FTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSE 661 (834)
Q Consensus 584 ~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h-~~~V~sl~fspdg~~llasgs~Dg~ 661 (834)
|.....+. +|...+.+++|.|||..+++|+.|+.|..||++... .....+- ...|.+++.++||+.+++++ .|..
T Consensus 301 gd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dlait~Dgk~vl~v~-~d~~ 377 (519)
T KOG0293|consen 301 GDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDLAITYDGKYVLLVT-VDKK 377 (519)
T ss_pred chhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--hhcccccccceeEEEEEcCCCcEEEEEe-cccc
Confidence 99887774 356889999999999999999999999999998543 3333332 25699999999999777555 6999
Q ss_pred EEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCC--EEEEEEcC-CCCEEEE
Q 003279 662 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ--VHSVCWNT-SGEYLAS 738 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~--I~sl~~sp-dg~~Las 738 (834)
|++|+.++......+..+.++++++++.+++++++.-.+..|++||++..+.+..+.||... |..-||-- +..++++
T Consensus 378 i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaS 457 (519)
T KOG0293|consen 378 IRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIAS 457 (519)
T ss_pred eeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEe
Confidence 99999999888888888899999999999999999999999999999998999999988753 44446654 4589999
Q ss_pred Ee-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCC
Q 003279 739 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTE 796 (834)
Q Consensus 739 gs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~-~L~sgs~dg~I~Iwdl~~ 796 (834)
|+ |+.|+||+..++ +.+.++.+|...|++++|+|..+ .+|+++.||+|+||....
T Consensus 458 GSED~kvyIWhr~sg---kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 458 GSEDSKVYIWHRISG---KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCceEEEEEccCC---ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 99 999999999998 89999999999999999999775 577888999999998754
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-27 Score=230.61 Aligned_cols=266 Identities=21% Similarity=0.296 Sum_probs=230.3
Q ss_pred cCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003279 500 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 579 (834)
Q Consensus 500 ~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IW 579 (834)
....++..+.+.|++|++|..... ..++++.+|...|..++.+.|...|++|+.|+.|.+|
T Consensus 26 N~dGnY~ltcGsdrtvrLWNp~rg-------------------~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 26 NVDGNYCLTCGSDRTVRLWNPLRG-------------------ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred ccCCCEEEEcCCCceEEeeccccc-------------------ceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence 334467777778899999955433 3578889999999999999999999999999999999
Q ss_pred eCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC-ceeeeeccCCCCeEEEEEccCCCcEEEEEeC
Q 003279 580 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 658 (834)
Q Consensus 580 d~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~-~~i~~~~~h~~~V~sl~fspdg~~llasgs~ 658 (834)
|+++|+.++.+.+|.+.|+.++|+.+...+++|+.|.+|++||.++.. .++..+....+.|.+|... ++.+++|+.
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~ 163 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSV 163 (307)
T ss_pred EcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeecc
Confidence 999999999999999999999999999999999999999999998754 3677888888999999997 557889999
Q ss_pred CCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEE--EEEEcCCCCEE
Q 003279 659 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH--SVCWNTSGEYL 736 (834)
Q Consensus 659 Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~--sl~~spdg~~L 736 (834)
||+++.||++.|.....+- ..+|++++|+++++..++++.|+.|++.|-.+|+.+..+++|.+.-. ..+++....++
T Consensus 164 DGtvRtydiR~G~l~sDy~-g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV 242 (307)
T KOG0316|consen 164 DGTVRTYDIRKGTLSSDYF-GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHV 242 (307)
T ss_pred CCcEEEEEeecceeehhhc-CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeE
Confidence 9999999999998765543 47899999999999999999999999999999999999999987543 45677778899
Q ss_pred EEEe-CCeEEEEEcCCCCCceeEEEeecCCCc-eEEEEEeCCCCEEEEEEcCCeEEEE
Q 003279 737 ASVS-DELVRVWSIGSGSKGECIHELSCTGNK-FHSCVFHPTFPSLLVIGCYETLELW 792 (834)
Q Consensus 737 asgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~-I~svafspdg~~L~sgs~dg~I~Iw 792 (834)
++|+ ||.|++||+... ..+..+..+... +.++.++|.-..|+++...+ +.+|
T Consensus 243 ~sgSEDG~Vy~wdLvd~---~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~ 296 (307)
T KOG0316|consen 243 FSGSEDGKVYFWDLVDE---TQISKLSVVSTVIVTDLSCHPTMDDFITATGHG-DLFW 296 (307)
T ss_pred EeccCCceEEEEEeccc---eeeeeeccCCceeEEeeecccCccceeEecCCc-eece
Confidence 9999 999999999887 677778877777 89999999988787776655 4444
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-27 Score=251.20 Aligned_cols=289 Identities=17% Similarity=0.260 Sum_probs=232.9
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE----EEEe-ccCCCCeEEEEECCCCCEEEEEeCCCe
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV----KSTL-EEHTQWITDVRFSPSLSRLATSSADRT 617 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~----~~~l-~~h~~~I~~l~fspdg~~Latgs~Dg~ 617 (834)
.....+.+|+..|.++++.|.|-.|++|+.|.+|++||+..... .+.+ ......|+++.|++.+..|++.+....
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 34467889999999999999999999999999999999864322 1222 234457999999999999999999999
Q ss_pred EEEEecCCCCc-----------eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-eeeEeec------C
Q 003279 618 VRVWDTENPDY-----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC------Q 679 (834)
Q Consensus 618 I~IWDl~s~~~-----------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~-~i~~~~~------~ 679 (834)
++|+|-+.... .+...++|...++|.+|+|+.+..|++|+.||++++||++..+ ...+|++ .
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 99999764321 0123467999999999999999999999999999999998654 3444443 2
Q ss_pred CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe--E-EEEEeCCCC--CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC
Q 003279 680 SGATQMRFQPRLGRILAAAIENYISILDVETQV--C-RLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 753 (834)
Q Consensus 680 ~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~--~-~~~l~~h~~--~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~ 753 (834)
-.++.++|+++++.|++|+.||.|.+||..... + ...-..|.. .|+||.||+||++|++-+ |+++++||++..+
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 347899999999999999999999999986542 2 223345776 899999999999999988 9999999999875
Q ss_pred CceeEEEeec--CCCceEEEEEeCCCCEEEEEEc------CCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEE
Q 003279 754 KGECIHELSC--TGNKFHSCVFHPTFPSLLVIGC------YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 824 (834)
Q Consensus 754 ~~~~i~~~~~--~~~~I~svafspdg~~L~sgs~------dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSg 824 (834)
+++....+ ...+-+.|+|+|+.+.|++|++ .+.+++||..+-..+ ++.-....|..+.|+|.-+.|+.|
T Consensus 398 --kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~g 475 (641)
T KOG0772|consen 398 --KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAG 475 (641)
T ss_pred --cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeee
Confidence 44444333 3445688999999999999865 357999999888777 555567889999999999999999
Q ss_pred ecCCcEEEe
Q 003279 825 SHDKCVKIW 833 (834)
Q Consensus 825 s~DG~I~IW 833 (834)
+.||.++||
T Consensus 476 sgdG~~~vy 484 (641)
T KOG0772|consen 476 SGDGTAHVY 484 (641)
T ss_pred cCCCceEEE
Confidence 999999986
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-28 Score=237.85 Aligned_cols=251 Identities=18% Similarity=0.234 Sum_probs=226.9
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
.-+.+|.||.+.|++.+++.+...-|+++.|-+.+|||.-+|..+..+. |...|..++|+.|.++|+||+.++.++|||
T Consensus 50 dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfd 128 (334)
T KOG0278|consen 50 DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFD 128 (334)
T ss_pred CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhh
Confidence 3478899999999999999999999999999999999999999999984 889999999999999999999999999999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCe
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 702 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~ 702 (834)
++..+.+...+.+|.+.|..+.|......+| ++..|++|++||.++++.+..+..+..++++.++++|. +++.+..+.
T Consensus 129 ln~p~App~E~~ghtg~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~-ilTia~gss 206 (334)
T KOG0278|consen 129 LNRPKAPPKEISGHTGGIRTVLWCHEDKCIL-SSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR-ILTIAYGSS 206 (334)
T ss_pred ccCCCCCchhhcCCCCcceeEEEeccCceEE-eeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCC-EEEEecCce
Confidence 9999888999999999999999998867565 66889999999999999999999999999999999966 556667789
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEE-eecCCCceEEEEEeCCCCEE
Q 003279 703 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE-LSCTGNKFHSCVFHPTFPSL 780 (834)
Q Consensus 703 I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~-~~~~~~~I~svafspdg~~L 780 (834)
|.+||..+...+..++ ....|.+..++|+..++++|+ |..++.||..++. .+.. ..+|.++|.|+.|+|+|...
T Consensus 207 V~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge---Ei~~~nkgh~gpVhcVrFSPdGE~y 282 (334)
T KOG0278|consen 207 VKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE---EIGSYNKGHFGPVHCVRFSPDGELY 282 (334)
T ss_pred eEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCc---eeeecccCCCCceEEEEECCCCcee
Confidence 9999999998888876 567899999999998888888 9999999999994 4444 48899999999999999999
Q ss_pred EEEEcCCeEEEEECCCCeEE
Q 003279 781 LVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 781 ~sgs~dg~I~Iwdl~~~~~~ 800 (834)
++|+.||+|+||.+..++..
T Consensus 283 AsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 283 ASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eccCCCceEEEEEecCCCch
Confidence 99999999999998766543
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-27 Score=249.77 Aligned_cols=276 Identities=19% Similarity=0.275 Sum_probs=241.8
Q ss_pred CCCeEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee
Q 003279 552 TSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 630 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~-Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i 630 (834)
.+.|.+++|+|...+ +|+++ .-.|.||+..+.....++......|++++|..||++|++|...|.|+|||+.+ +..+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHH
Confidence 356999999996544 44444 36899999998888888888889999999999999999999999999999554 5568
Q ss_pred eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCC-EEEEEEcCCeEEEEEC
Q 003279 631 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG-RILAAAIENYISILDV 708 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~-~ll~~s~dg~I~iwDl 708 (834)
+.+.+|..+|..+.|+|.++.+|++|++|+.+++||+.+......+. +.+.|.|.+|+|... .+++|+.||.|++||+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 89999999999999999999999999999999999999888654444 456799999999755 6788899999999999
Q ss_pred CCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003279 709 ETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 787 (834)
Q Consensus 709 ~t~-~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg 787 (834)
+.. ..+.++. |..+|.++.+-|.|..|++++...|+|||+.++. ..+.....|...|+|+++..++..|++++-|+
T Consensus 184 R~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~--qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 184 RSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG--QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred ccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc--eehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 987 6666665 9999999999999999999999999999999774 45555566999999999999999999999999
Q ss_pred eEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 788 TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 788 ~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
.|++||+.+.+.+.-....++|.+++.+|++..++.|-.||.+.+
T Consensus 261 ~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 261 HVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence 999999999998877778899999999999999999999998754
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=244.71 Aligned_cols=276 Identities=24% Similarity=0.366 Sum_probs=243.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeee
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~ 632 (834)
..|+++...+....+++|+.|..+.++|..+...+.++++|...|+.+.|+++...+++++.|..|+||...... +...
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-EPTS 298 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-Cccc
Confidence 358888888887899999999999999999999999999999999999999999999999999999999998755 4667
Q ss_pred eccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC---CCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003279 633 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIENYISILDVE 709 (834)
Q Consensus 633 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~---~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~ 709 (834)
...|..+|+.+..+|.|++++ ++++|+++.+.|++++.++...... -.+++..|+|||-.|.+|..|+.|+|||+.
T Consensus 299 ~~~h~~~V~~ls~h~tgeYll-sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLL-SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred cccccccceeeeeccCCcEEE-EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence 778999999999999988555 8899999999999999998887764 348999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCC
Q 003279 710 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYE 787 (834)
Q Consensus 710 t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-~~~~I~svafspdg~~L~sgs~dg 787 (834)
++..+..|.+|.++|..|+|+.+|.||+++. |+.|++||++... .+.++.. ....+.++.|.+.|.+|++++.+=
T Consensus 378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~---n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l 454 (506)
T KOG0289|consen 378 SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK---NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDL 454 (506)
T ss_pred CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc---ccceeeccccccceeEEEcCCCCeEEeeccee
Confidence 9999999999999999999999999999999 7789999999874 3333332 234799999999999999998777
Q ss_pred eEEEEECCCCe--EE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 788 TLELWNMTENK--TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 788 ~I~Iwdl~~~~--~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
.|++++-.+.. .+ .+..|.+..+++.|.....++++++.|..++|+
T Consensus 455 ~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 455 QVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred EEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 77777754443 33 566788899999999999999999999999886
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=264.29 Aligned_cols=270 Identities=24% Similarity=0.430 Sum_probs=240.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE-eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 628 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~-l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~ 628 (834)
.|...|.|..|. ..++++++.|.+|++||..++..+.. +.+|.+.|.+++|..-+.+|++|+.|.++++||+.++.
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~- 282 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE- 282 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-
Confidence 367778899998 45899999999999999999999988 99999999999998778899999999999999988766
Q ss_pred eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003279 629 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILD 707 (834)
Q Consensus 629 ~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwD 707 (834)
+...+.+|.+.|.++...+ .++++|+.|.+|++|++.++.++..+. +...|.++.++ +.++++|+.|+.|.+||
T Consensus 283 C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 283 CTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD 357 (537)
T ss_pred EEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence 5899999999999999874 478889999999999999999999999 78889999998 78999999999999999
Q ss_pred CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003279 708 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 786 (834)
Q Consensus 708 l~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d 786 (834)
+.+++++..+.+|...|+++.+... .++++|+ |++|++||+++.. +++..+..|...+..+.+ .+.+|++++.|
T Consensus 358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD 432 (537)
T KOG0274|consen 358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHTSLVSSLLL--RDNFLVSSSAD 432 (537)
T ss_pred hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCccccccccc--ccceeEecccc
Confidence 9999999999999999999988765 7888888 9999999999864 688888888888855554 45689999999
Q ss_pred CeEEEEECCCCeEE-Eecc-CCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 787 ETLELWNMTENKTL-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 787 g~I~Iwdl~~~~~~-~l~~-h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+.|++||..+++++ .+.+ |...|.++++. ...+++++.||.+++||
T Consensus 433 ~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 433 GTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred ccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99999999999988 4555 56889888876 46788999999999997
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-27 Score=242.36 Aligned_cols=273 Identities=20% Similarity=0.334 Sum_probs=235.3
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
.++++||.|+-+++|.-..+..- +...+..-..|--|.++|.|++||.|...||+|+.||.|+||.+.+
T Consensus 226 qyLvsgSvDGFiEVWny~~GKlr-----------KDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t 294 (508)
T KOG0275|consen 226 QYLVSGSVDGFIEVWNYTTGKLR-----------KDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET 294 (508)
T ss_pred ceEeeccccceeeeehhccchhh-----------hhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec
Confidence 89999999999999966554322 2222233344556889999999999999999999999999999999
Q ss_pred CeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 003279 584 FTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 662 (834)
Q Consensus 584 ~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 662 (834)
|.+++.+. .|+..|+|+.|+.|+..+++++.|.+|+|.-+.+++. ++.+.+|...|+...|.++|.+++ +++.||+|
T Consensus 295 G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~-LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtv 372 (508)
T KOG0275|consen 295 GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC-LKEFRGHSSYVNEATFTDDGHHII-SASSDGTV 372 (508)
T ss_pred chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh-HHHhcCccccccceEEcCCCCeEE-EecCCccE
Confidence 99999986 8999999999999999999999999999999998775 899999999999999999988655 89999999
Q ss_pred EEEECCCCceeeEeec---CCCeeEEEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEEeC---CCCCEEEEEEcCCCCE
Q 003279 663 RYWSINNGSCAGVFKC---QSGATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEY 735 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~~---~~~i~~l~~sp~-g~~ll~~s~dg~I~iwDl~t~~~~~~l~~---h~~~I~sl~~spdg~~ 735 (834)
++|+..+.+|+.+|+. ...|..+...|. -..++++...++|+|.++. |..++.+.. ..+...+.+.+|.|.+
T Consensus 373 kvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGew 451 (508)
T KOG0275|consen 373 KVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEW 451 (508)
T ss_pred EEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcE
Confidence 9999999999999885 345777777774 4578888889999999986 556666643 3456778889999999
Q ss_pred EEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003279 736 LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 793 (834)
Q Consensus 736 Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwd 793 (834)
+++.+ |+.++.|.+.++ ..-+.+..|...+..++-+|..+.|++-+.||.+++|.
T Consensus 452 iYcigED~vlYCF~~~sG---~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 452 IYCIGEDGVLYCFSVLSG---KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEEccCcEEEEEEeecC---ceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 99988 999999999998 67778888999999999999999999999999999994
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=266.99 Aligned_cols=280 Identities=20% Similarity=0.298 Sum_probs=237.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEeCCC------------CeEEEEeccCCCCeEEEEECCCCCEEEEEeCC
Q 003279 550 ASTSKVESCHFSPDGKLLATGG--HDKKAVLWCTES------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 615 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs--~Dg~I~IWd~~t------------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D 615 (834)
.+...|.+|+.+|||..+|||+ .|+.++||+.+. .+.+.....|.+.|+|+.|++||.+||+||+|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 4456699999999999999999 899999997642 23445667899999999999999999999999
Q ss_pred CeEEEEecCC----CC-------------ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec
Q 003279 616 RTVRVWDTEN----PD-------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 678 (834)
Q Consensus 616 g~I~IWDl~s----~~-------------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~ 678 (834)
+.|.||+... .. .++..+.+|...|.+++|+|++. ++++++.|++|.+||..+.+++.++..
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccceeeeeeec
Confidence 9999999872 00 14577889999999999999855 888999999999999999998888875
Q ss_pred -CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC------CCEEEEEEcCCCCEEEEEe--CC---eEEE
Q 003279 679 -QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK------NQVHSVCWNTSGEYLASVS--DE---LVRV 746 (834)
Q Consensus 679 -~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~------~~I~sl~~spdg~~Lasgs--Dg---~I~I 746 (834)
.+.|..+.|.|-|++|++-+.|++|+||++.+....+.+.++. ..+..+.|||||.+|++.. .+ ++.|
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 5679999999999999999999999999988877777766543 3577899999999999976 33 7888
Q ss_pred EEcCCCCCceeEEEeecCCCceEEEEEeCC------C-------C----EEEEEEcCCeEEEEECCCCeEEEe--ccCCC
Q 003279 747 WSIGSGSKGECIHELSCTGNKFHSCVFHPT------F-------P----SLLVIGCYETLELWNMTENKTLTL--SAHDK 807 (834)
Q Consensus 747 wDl~s~~~~~~i~~~~~~~~~I~svafspd------g-------~----~L~sgs~dg~I~Iwdl~~~~~~~l--~~h~~ 807 (834)
.+-.+. +.-..+.+|..++.++.|+|. . . .+++|+.|++|.||.....+++.. .-...
T Consensus 250 ieR~tW---k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~ 326 (942)
T KOG0973|consen 250 IERGTW---KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNK 326 (942)
T ss_pred EecCCc---eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcC
Confidence 887655 667788899999999999873 1 1 577889999999999988777733 23467
Q ss_pred CeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 808 LVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 808 ~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
.|.+++|+|||..|+.||.||+|.+.
T Consensus 327 SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 327 SIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred ceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 89999999999999999999999875
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=256.70 Aligned_cols=264 Identities=15% Similarity=0.215 Sum_probs=210.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE-------------EEeccCCCCeEEEEECC-CCCEEEEEeCCCeE
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-------------STLEEHTQWITDVRFSP-SLSRLATSSADRTV 618 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~-------------~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I 618 (834)
..|....+++|+..+++++.+..+..|+...+..+ ..+.+|.+.|++++|+| ++.+|++|+.|++|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 34666667777666677777777777765443322 24678999999999999 88999999999999
Q ss_pred EEEecCCCC------ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCC
Q 003279 619 RVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRL 691 (834)
Q Consensus 619 ~IWDl~s~~------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g 691 (834)
+|||+.+.. .++..+.+|...|.+++|+|++..+|++++.|+.|++||+++++.+..+. +...|.+++|+|++
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG 180 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC
Confidence 999997643 24567889999999999999987789999999999999999998888876 45679999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCC-EEEEEEcCCCCEEEEEe-----CCeEEEEEcCCCCCceeEEEeec-C
Q 003279 692 GRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCWNTSGEYLASVS-----DELVRVWSIGSGSKGECIHELSC-T 764 (834)
Q Consensus 692 ~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~-I~sl~~spdg~~Lasgs-----Dg~I~IwDl~s~~~~~~i~~~~~-~ 764 (834)
..|++++.|+.|++||+++++.+..+.+|... +..+.|.+++..+++++ |+.|++||+++... .+..... .
T Consensus 181 ~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~--p~~~~~~d~ 258 (493)
T PTZ00421 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS--PYSTVDLDQ 258 (493)
T ss_pred CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC--ceeEeccCC
Confidence 99999999999999999999999999888765 45678898877776643 67999999987642 3333322 2
Q ss_pred CCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEe--ccCCCCeEEEEEeCCC
Q 003279 765 GNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTL--SAHDKLVSSLAASTVN 818 (834)
Q Consensus 765 ~~~I~svafspdg~~L~sgs-~dg~I~Iwdl~~~~~~~l--~~h~~~V~~lafspdg 818 (834)
...+..+.|++++..|++++ .|+.|++||+.+++.+.. ..+..++..++|.|.-
T Consensus 259 ~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 259 SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 34566678999999999887 599999999999887733 2455678888888753
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-26 Score=253.47 Aligned_cols=268 Identities=22% Similarity=0.390 Sum_probs=232.1
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeecc-
Q 003279 557 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG- 635 (834)
Q Consensus 557 sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~- 635 (834)
-+.|+. ...||+|. ...|++|+..+++.......+.+.|+++.|+++|.+|++|..+|.|.|||..+.+. ++.+.+
T Consensus 182 lldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-~~~~~~~ 258 (484)
T KOG0305|consen 182 LLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-TRTLRGS 258 (484)
T ss_pred Hhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-cccccCC
Confidence 367884 44777775 36899999999887766666689999999999999999999999999999997664 666777
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeE-ee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 003279 636 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 713 (834)
Q Consensus 636 h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~-~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~ 713 (834)
|...|.+++|. ..++.+|+.|+.|..+|++..+.... +. |...|+.+.|++++.++++|+.|+.+.|||.....+
T Consensus 259 h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p 335 (484)
T KOG0305|consen 259 HASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP 335 (484)
T ss_pred cCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence 99999999998 45788999999999999998765544 43 466799999999999999999999999999988899
Q ss_pred EEEEeCCCCCEEEEEEcC-CCCEEEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc--CC
Q 003279 714 RLKLQGHKNQVHSVCWNT-SGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC--YE 787 (834)
Q Consensus 714 ~~~l~~h~~~I~sl~~sp-dg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~--dg 787 (834)
...+..|...|..++|+| ...+||+|+ |++|++||+.++ ..+..+. ....|.++.|++..+.|+++.. ++
T Consensus 336 ~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g---~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 336 KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG---ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC---cEecccc-cCCceeeEEEcCCCCEEEEecCCCCC
Confidence 999999999999999999 456788766 999999999988 5555544 3778999999999988887655 45
Q ss_pred eEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 788 TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 788 ~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.|.||+..+.+.+ .+.+|...|..++++|||..|++|+.|.++++|+
T Consensus 412 ~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 412 QITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred cEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 8999999987766 7889999999999999999999999999999996
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-26 Score=230.62 Aligned_cols=271 Identities=18% Similarity=0.300 Sum_probs=224.5
Q ss_pred cCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCC-CeEE-EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC
Q 003279 549 PASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 625 (834)
Q Consensus 549 ~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~IWd~~t-~~~~-~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s 625 (834)
....+.|.+|+||| ...+|+.|+.|++|++|++.. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 45567899999999 555777899999999999986 3333 44567999999999999999999999999999999999
Q ss_pred CCceeeeeccCCCCeEEEEEccCCC-cEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003279 626 PDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 704 (834)
Q Consensus 626 ~~~~i~~~~~h~~~V~sl~fspdg~-~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~ 704 (834)
+. +..+..|.++|.++.|-+... .+|++|+.|++|++||++...++.++..++.+.++..-. ..++++..+..|.
T Consensus 104 ~Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~--pm~vVata~r~i~ 179 (347)
T KOG0647|consen 104 GQ--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY--PMAVVATAERHIA 179 (347)
T ss_pred CC--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC--ceeEEEecCCcEE
Confidence 75 677888999999999986533 478899999999999999999999999989888887654 4788889999999
Q ss_pred EEECCCCeEEEE-Ee-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC---------CceEEEE
Q 003279 705 ILDVETQVCRLK-LQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---------NKFHSCV 772 (834)
Q Consensus 705 iwDl~t~~~~~~-l~-~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~---------~~I~sva 772 (834)
+|+++++..... .. .-+-.++||+...|....+.|+ +|.+.|..+..+.. ..-..+++|. ..|++++
T Consensus 180 vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 180 VYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceE
Confidence 999987643322 11 1234578999988888888888 99999999987643 3444555554 2478899
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEE
Q 003279 773 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 824 (834)
Q Consensus 773 fspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSg 824 (834)
|+|....|+++++||++.+||-.....+ ....|..+|+|.+|+.+|.++|-+
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred eecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 9999999999999999999998876655 557899999999999999988755
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=229.38 Aligned_cols=294 Identities=18% Similarity=0.283 Sum_probs=238.6
Q ss_pred EEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 003279 506 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 585 (834)
Q Consensus 506 l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~ 585 (834)
+.+|+....+..|...-..+. .......++.....+.+|.+.|+|++.+ +.++|+|+.|-+|+|||+.+.+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~-------~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ 74 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKG-------CTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRK 74 (362)
T ss_pred EEEeeeeeEEEEEEeccCccc-------cccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchh
Confidence 456778777777744332211 1123345667788899999999999996 8899999999999999999999
Q ss_pred EEEEeccCCCCeEEEEECCCCC--EEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 003279 586 VKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 663 (834)
Q Consensus 586 ~~~~l~~h~~~I~~l~fspdg~--~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 663 (834)
.+..+-.|.+.|+++.|.++.. .|++|+.||.|.+|+.... ..+.++.+|.+.|+.++.+|.++ +..+.+.|+.++
T Consensus 75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr 152 (362)
T KOG0294|consen 75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLR 152 (362)
T ss_pred hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCc-eEEEEcCCceee
Confidence 9999999999999999999765 8999999999999999976 46899999999999999999977 666788899999
Q ss_pred EEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCe
Q 003279 664 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL 743 (834)
Q Consensus 664 lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~ 743 (834)
+||+-.|+.....+.....+.+.|+|.|.+|+++.. +.|-+|.+++......+. ....+.|+.|...+.+++.+.|+.
T Consensus 153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~~~~L~vG~d~~~ 230 (362)
T KOG0294|consen 153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGR-NKIDIYQLDNASVFREIE-NPKRILCATFLDGSELLVGGDNEW 230 (362)
T ss_pred eehhhcCccceeeccCCcceeeEEcCCCCEEEEEec-cEEEEEecccHhHhhhhh-ccccceeeeecCCceEEEecCCce
Confidence 999999998888888778888999999998888776 568889888766555554 335678888875554444444889
Q ss_pred EEEEEcCCCCCceeEEEeecCCCceEEEEE--eCCCCEEEEEEcCCeEEEEECCCC-----eEEEeccCCCCeEEEEEe
Q 003279 744 VRVWSIGSGSKGECIHELSCTGNKFHSCVF--HPTFPSLLVIGCYETLELWNMTEN-----KTLTLSAHDKLVSSLAAS 815 (834)
Q Consensus 744 I~IwDl~s~~~~~~i~~~~~~~~~I~svaf--spdg~~L~sgs~dg~I~Iwdl~~~-----~~~~l~~h~~~V~~lafs 815 (834)
|.+||..+. .+...+..|...|..+.+ .|++.+|+++++||.|+|||++.. +.+........++|+...
T Consensus 231 i~~~D~ds~---~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~~ 306 (362)
T KOG0294|consen 231 ISLKDTDSD---TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRVK 306 (362)
T ss_pred EEEeccCCC---ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceeeeh
Confidence 999999886 788999999999999984 467889999999999999999776 333334446677777653
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=261.07 Aligned_cols=245 Identities=19% Similarity=0.329 Sum_probs=203.0
Q ss_pred EEEEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC--------------------------------CC-----
Q 003279 586 VKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--------------------------------PD----- 627 (834)
Q Consensus 586 ~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s--------------------------------~~----- 627 (834)
....+. .|.+.|+++.|++||+|||+|+.|+.|+||.+.. ..
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 334455 8999999999999999999999999999998764 00
Q ss_pred ----------------------ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEE
Q 003279 628 ----------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQM 685 (834)
Q Consensus 628 ----------------------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l 685 (834)
.++..+.+|.+.|.+|.|+.++ +|.+++.|.+|++|++....|+.+|.|..-|+|+
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcV 415 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCV 415 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcceeeEEecCCeeEEE
Confidence 2345677899999999999763 6779999999999999999999999999999999
Q ss_pred EEec-CCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003279 686 RFQP-RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 763 (834)
Q Consensus 686 ~~sp-~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 763 (834)
+|+| |.++|++|+-|+.|+||++...+.+.-..- ..-|+++||.|||++.++|+ +|.+++|+..........+ +..
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~-I~~ 493 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH-IRL 493 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee-Eee
Confidence 9999 778999999999999999998877765553 47899999999999999999 9999999998763211111 111
Q ss_pred C------CCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCeEE-EeccCC--CCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 764 T------GNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENKTL-TLSAHD--KLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 764 ~------~~~I~svafspdg~-~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~--~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
+ ...|+.+.|.|... .|++.+.|..|+|||..+..++ .+.++. ..-....|+.||++|+++++|..|+||
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 1 23799999997654 5999999999999999887776 555433 234566788999999999999999999
Q ss_pred C
Q 003279 834 K 834 (834)
Q Consensus 834 d 834 (834)
+
T Consensus 574 ~ 574 (712)
T KOG0283|consen 574 K 574 (712)
T ss_pred e
Confidence 6
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-26 Score=231.76 Aligned_cols=289 Identities=19% Similarity=0.311 Sum_probs=246.6
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 003279 541 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 620 (834)
Q Consensus 541 ~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 620 (834)
.+..++.+.||.+.|+.++.......+.+++.|.+.+||.+++++++..+.+|.+.|++|+|++.+.++++++.|++.+|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 45667888999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred EecC------C---------------------------------CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc
Q 003279 621 WDTE------N---------------------------------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 661 (834)
Q Consensus 621 WDl~------s---------------------------------~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 661 (834)
|... . -..++..+.+|...|.+..|...+. -+++++.|.+
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSWDRT 295 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ-QMVTASWDRT 295 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc-eeeeeecccc
Confidence 9621 0 0124567888999999999988776 4559999999
Q ss_pred EEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 003279 662 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spdg~~Lasg 739 (834)
..+||+++++.+..+.. ....+.++-+|..+.+++.+.|.+.++||.+.. ..+..|.+|...|+++.|..+.+ ++++
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSg 374 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSG 374 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeec
Confidence 99999999999998875 556888899999999999999999999999864 56788999999999999987766 4555
Q ss_pred e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-----eccCCCCeEEEE
Q 003279 740 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-----LSAHDKLVSSLA 813 (834)
Q Consensus 740 s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~-----l~~h~~~V~~la 813 (834)
+ |.+|+|||+++-. ..+.++. ...+++.++++..++.|+.--.+..|++||+...++-. -.+|...|+|++
T Consensus 375 SDDrTvKvWdLrNMR--splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~A 451 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMR--SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCA 451 (481)
T ss_pred CCCceEEEeeecccc--Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeee
Confidence 5 8899999999864 3455544 36788999999999888888888899999999887663 348999999999
Q ss_pred EeCCCC--EEEEEecCCcEEEeC
Q 003279 814 ASTVNG--MVASASHDKCVKIWK 834 (834)
Q Consensus 814 fspdg~--~LaSgs~DG~I~IWd 834 (834)
|..+.. -|++|+.|..+.=|+
T Consensus 452 W~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 452 WLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred ccccCcccccccccccceeeeeE
Confidence 986543 578999999988885
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=256.87 Aligned_cols=265 Identities=23% Similarity=0.419 Sum_probs=232.1
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEE-ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~-l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
++++.+|+.|.++.+|..... ..+.. +.||.+.|++++|..-+.+|++|+.|.+++|||+
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~-------------------~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~ 278 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNG-------------------YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDC 278 (537)
T ss_pred cCeEEecCCCceeEEeecccc-------------------eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEec
Confidence 678899999999988844322 33455 9999999999999987889999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc
Q 003279 582 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 661 (834)
Q Consensus 582 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 661 (834)
.++.+..++.+|.+.|.++...+ .++++|+.|.+|++|++.++. .+..+.+|.+.|.++.++ ..++++|+.|++
T Consensus 279 ~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~ 352 (537)
T KOG0274|consen 279 STGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGA-CLNLLRGHTGPVNCVQLD---EPLLVSGSYDGT 352 (537)
T ss_pred CCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcc-eEEEeccccccEEEEEec---CCEEEEEecCce
Confidence 99999999999999999998854 478889999999999999766 488888899999999998 447889999999
Q ss_pred EEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 003279 662 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spdg~~Lasg 739 (834)
|++||+.+++++..+.. ...|.++.+... ..++.|+.|+.|++||+++. +++..+.+|..-+.++.+ .+++|+++
T Consensus 353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~ 429 (537)
T KOG0274|consen 353 VKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSS 429 (537)
T ss_pred EEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEec
Confidence 99999999999999986 456888877765 89999999999999999999 999999999998876655 57788888
Q ss_pred e-CCeEEEEEcCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 740 S-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 740 s-Dg~I~IwDl~s~~~~~~i~~~~~-~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
+ |++|++||..++ .++..+.+ +...|..+++. ...+++++.++.+++||+++++..
T Consensus 430 ~aD~~Ik~WD~~~~---~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 430 SADGTIKLWDAEEG---ECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred cccccEEEeecccC---ceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence 8 999999999988 78888877 56778877776 467999999999999999999877
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=251.87 Aligned_cols=269 Identities=20% Similarity=0.369 Sum_probs=228.3
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
...++.++-..+.|.+|+-.=. ..+..|..|.++|..++|+|.+.++++|+.|.+|+||+.
T Consensus 20 ~rPwILtslHsG~IQlWDYRM~-------------------tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 20 KRPWILTSLHSGVIQLWDYRMG-------------------TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred CCCEEEEeecCceeeeehhhhh-------------------hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence 3478888888999999944321 234567899999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc
Q 003279 582 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 661 (834)
Q Consensus 582 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 661 (834)
++.+++.++.+|-+.|..+.|++.-.+|+++|.|.+|+||+..+.+ ++..+.+|...|.|..|+|..+ ++++++-|-+
T Consensus 81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltGHnHYVMcAqFhptED-lIVSaSLDQT 158 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTGHNHYVMCAQFHPTED-LIVSASLDQT 158 (1202)
T ss_pred ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-eEEEEecCceEEEeeccCCccc-eEEEecccce
Confidence 9999999999999999999999999999999999999999999865 5999999999999999999854 8889999999
Q ss_pred EEEEECCCCc---------------------------ee--eEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003279 662 IRYWSINNGS---------------------------CA--GVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQ 711 (834)
Q Consensus 662 I~lwDl~s~~---------------------------~i--~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~ 711 (834)
|+|||+..-+ .+ ..+. |..+|+-++|+|.-..|++|+.|..|++|.+...
T Consensus 159 VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet 238 (1202)
T KOG0292|consen 159 VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 238 (1202)
T ss_pred EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc
Confidence 9999985311 01 1111 3456899999999999999999999999998764
Q ss_pred e--EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 003279 712 V--CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET 788 (834)
Q Consensus 712 ~--~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~ 788 (834)
+ .+.+..+|.+.|.|+-|+|.-.++++.+ |++|+|||+... ..+..+......++.++.+|..+.+++|- |+-
T Consensus 239 KaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR---t~v~tfrrendRFW~laahP~lNLfAAgH-DsG 314 (1202)
T KOG0292|consen 239 KAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR---TSVQTFRRENDRFWILAAHPELNLFAAGH-DSG 314 (1202)
T ss_pred cceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc---cceeeeeccCCeEEEEEecCCcceeeeec-CCc
Confidence 3 4556788999999999999999999988 999999999887 78888888889999999999998655554 443
Q ss_pred EEEEECC
Q 003279 789 LELWNMT 795 (834)
Q Consensus 789 I~Iwdl~ 795 (834)
+.+|.++
T Consensus 315 m~VFkle 321 (1202)
T KOG0292|consen 315 MIVFKLE 321 (1202)
T ss_pred eEEEEEc
Confidence 4444443
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=253.70 Aligned_cols=275 Identities=23% Similarity=0.420 Sum_probs=234.8
Q ss_pred EEEEc-CCCCEEEEEeCCCcEEEEeCCCCe------EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC-c
Q 003279 557 SCHFS-PDGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-Y 628 (834)
Q Consensus 557 sl~fS-pdg~~Lasgs~Dg~I~IWd~~t~~------~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~-~ 628 (834)
.+..+ |.+++|++||+||.|++|++.... ....++.|.++|++++...+++.|+++|.|-+|++|+..... .
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 34444 367789999999999999876422 356788999999999999999999999999999999998764 6
Q ss_pred eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce--eeEee----------cCCCeeEEEEecCCCEEEE
Q 003279 629 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--AGVFK----------CQSGATQMRFQPRLGRILA 696 (834)
Q Consensus 629 ~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~--i~~~~----------~~~~i~~l~~sp~g~~ll~ 696 (834)
+..++..|.+.|.|+++-.....++|+|+-|+.|.+||++++.. +..+. +...+++++..+.+..|+.
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 78889999999999999444466999999999999999998732 22221 2456899999999999999
Q ss_pred EEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003279 697 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 775 (834)
Q Consensus 697 ~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp 775 (834)
|+.++.|++||.++++.+..+.+|+..|.++..++||..+++++ ||+|++||+.-. +|+.++..|...|+++..+|
T Consensus 189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---rCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---RCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---ceeeeEEeccCceEEEeeCC
Confidence 99999999999999999999999999999999999999999988 999999999887 89999999999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCC-eEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 776 TFPSLLVIGCYETLELWNMTEN-KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 776 dg~~L~sgs~dg~I~Iwdl~~~-~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+-.++++|+.|+.|+.-|+.+. +...+...+.+|..+..+.+..-+-+++.|+.|+-|.
T Consensus 266 sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 266 SFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred CcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 9999999999999999999884 3334555667788887775555556777888888884
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=240.87 Aligned_cols=241 Identities=19% Similarity=0.263 Sum_probs=211.7
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCC
Q 003279 548 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 548 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~s~ 626 (834)
+..-.+.|++++|-.||++||+|+..|.|+|||+.+...++.+.+|..+|..+.|+|. +..|++|+.|+.+++||+.+.
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a 143 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA 143 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence 3344567999999999999999999999999997776677889999999999999994 667889999999999999986
Q ss_pred CceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC-ceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003279 627 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 705 (834)
Q Consensus 627 ~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~-~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~i 705 (834)
.. ...+.+|++.|.|.+|+|-.++++++|+.||.|++||++.. ..+..+.++.+|..+.+-|.|..|++++ .+.|+|
T Consensus 144 ~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkV 221 (487)
T KOG0310|consen 144 YV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKV 221 (487)
T ss_pred EE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEE
Confidence 64 67889999999999999999999999999999999999987 7888999999999999999988776655 578999
Q ss_pred EECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003279 706 LDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 706 wDl~t~-~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sg 783 (834)
||+-+| +.+.....|...|+|+++..++..|++++ |+.|+|||+.+- +.++.+.- .++|.+++.+|++..+++|
T Consensus 222 WDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~---Kvv~s~~~-~~pvLsiavs~dd~t~viG 297 (487)
T KOG0310|consen 222 WDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY---KVVHSWKY-PGPVLSIAVSPDDQTVVIG 297 (487)
T ss_pred EEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce---EEEEeeec-ccceeeEEecCCCceEEEe
Confidence 999965 55555666999999999999999999999 999999997765 66666653 6789999999999999999
Q ss_pred EcCCeEEEEEC
Q 003279 784 GCYETLELWNM 794 (834)
Q Consensus 784 s~dg~I~Iwdl 794 (834)
..+|.+.+-+.
T Consensus 298 msnGlv~~rr~ 308 (487)
T KOG0310|consen 298 MSNGLVSIRRR 308 (487)
T ss_pred cccceeeeehh
Confidence 99997776644
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-24 Score=206.87 Aligned_cols=290 Identities=19% Similarity=0.257 Sum_probs=239.4
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC------CC---------eEEEEeccCCCCeEEEEECC
Q 003279 540 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE------SF---------TVKSTLEEHTQWITDVRFSP 604 (834)
Q Consensus 540 ~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~------t~---------~~~~~l~~h~~~I~~l~fsp 604 (834)
..|..+.++. .+..|.+++|+|.|.+.|+|+..++++|.-.. .+ -..+.-+.|.+.|+|.+|+|
T Consensus 21 ~~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 21 KHFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred cceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC
Confidence 3445555554 45679999999999999999999999987432 11 01123357999999999999
Q ss_pred CCCEEEEEeCCCeEEEEecCCCCc----eeeeeccCCCCeEEEEEccC---CCcEEEEEe-CCCcEEEEECCCCceeeEe
Q 003279 605 SLSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPS---KEDLLCSCD-NNSEIRYWSINNGSCAGVF 676 (834)
Q Consensus 605 dg~~Latgs~Dg~I~IWDl~s~~~----~i~~~~~h~~~V~sl~fspd---g~~llasgs-~Dg~I~lwDl~s~~~i~~~ 676 (834)
+|.+|++|+.|++|++..++.... .-..+..|.+.|..++|..+ +..+|++++ .|..|++-|...|.....+
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 999999999999999987764332 12456779999999999643 445666654 5788999999999988888
Q ss_pred ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC--C-----CCCEEEEEEcCCCCEEEEEe-CCeEEEEE
Q 003279 677 KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--H-----KNQVHSVCWNTSGEYLASVS-DELVRVWS 748 (834)
Q Consensus 677 ~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~--h-----~~~I~sl~~spdg~~Lasgs-Dg~I~IwD 748 (834)
..+.+-.-..++-++-.|++|+.|.+|++||++-..++.++.. | ...|.+++..|.|++|++|. |....+||
T Consensus 180 sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 180 SGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred cCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence 8766544455666788999999999999999999988887653 2 35789999999999999999 99999999
Q ss_pred cCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-----eEEEeccCCCCeEEEEEeCCCCEEEE
Q 003279 749 IGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-----KTLTLSAHDKLVSSLAASTVNGMVAS 823 (834)
Q Consensus 749 l~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~-----~~~~l~~h~~~V~~lafspdg~~LaS 823 (834)
++.+ ..+..+..|...|.++.|+|...++++++.|..|++-|+... ..+.+..|+..+..+.|+|..-.+++
T Consensus 260 irg~---r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfis 336 (350)
T KOG0641|consen 260 IRGG---RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFIS 336 (350)
T ss_pred eeCC---ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeee
Confidence 9998 889999999999999999999999999999999999998653 23366689999999999999999999
Q ss_pred EecCCcEEEe
Q 003279 824 ASHDKCVKIW 833 (834)
Q Consensus 824 gs~DG~I~IW 833 (834)
.+.|.++.+|
T Consensus 337 ssadkt~tlw 346 (350)
T KOG0641|consen 337 SSADKTATLW 346 (350)
T ss_pred ccCcceEEEe
Confidence 9999999999
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-26 Score=240.99 Aligned_cols=264 Identities=21% Similarity=0.357 Sum_probs=226.6
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
..+++|+.|..|+.|..... ....+.+|.|..+.|+++.|.++++++++++.|+.+++|++..
T Consensus 188 dtlatgg~Dr~Ik~W~v~~~-----------------k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~ 250 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVLGE-----------------KSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS 250 (459)
T ss_pred chhhhcchhhhhhhhhcccc-----------------hhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc
Confidence 56789999999999944322 2345677888999999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 663 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 663 (834)
.+...++.+|.+.|+++.|......+++|+.|.+|++||+.... +.+++. ....+.+|+.. ...+++|-.|+.|+
T Consensus 251 ~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~-C~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 251 LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY-CSKTVL-PGSQCNDIVCS---ISDVISGHFDKKVR 325 (459)
T ss_pred hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh-eecccc-ccccccceEec---ceeeeecccccceE
Confidence 99999999999999999999877779999999999999999744 344433 23456666665 34677999999999
Q ss_pred EEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC----CCCEEEEEEcCCCCEEEEE
Q 003279 664 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH----KNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 664 lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h----~~~I~sl~~spdg~~Lasg 739 (834)
+||+++..+......++.|+++..++++..+++++.|..+.++|+++......+... ....+.+.|||++.|+++|
T Consensus 326 fwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAG 405 (459)
T KOG0288|consen 326 FWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAG 405 (459)
T ss_pred EEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeec
Confidence 999999999999999999999999999999999999999999999999887777542 2347889999999999999
Q ss_pred e-CCeEEEEEcCCCCCceeEEEeecCCC--ceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003279 740 S-DELVRVWSIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLVIGCYETLELW 792 (834)
Q Consensus 740 s-Dg~I~IwDl~s~~~~~~i~~~~~~~~--~I~svafspdg~~L~sgs~dg~I~Iw 792 (834)
+ ||.|+||++.++ ++...+..... .|++++|+|.|..+++++.++.+.+|
T Consensus 406 S~dgsv~iW~v~tg---KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 406 SADGSVYIWSVFTG---KLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred cCCCcEEEEEccCc---eEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 9 999999999998 55555544433 59999999999999999999999998
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=222.05 Aligned_cols=241 Identities=24% Similarity=0.362 Sum_probs=215.6
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCce-eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 003279 588 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 666 (834)
Q Consensus 588 ~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~-i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwD 666 (834)
+.+.+|...|.+|+|+.+|..|++|+.|+++.+|+++..+.. -....+|.+.|-.++|+|....+|++++.|..|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 455689999999999999999999999999999999875432 2356789999999999999999999999999999999
Q ss_pred CCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEE
Q 003279 667 INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVR 745 (834)
Q Consensus 667 l~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~ 745 (834)
++.++++..+....+-..+.|+|+|.+++++..|..|.++|.++.+.+...+ ....+..++|+.++.+++... .|+|.
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEE
Confidence 9999999999988888899999999999999999999999999988776665 556788889987777666665 79999
Q ss_pred EEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEE
Q 003279 746 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 824 (834)
Q Consensus 746 IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSg 824 (834)
|...... +++..+..|.....|+.|+|+|+++++|+.|-.+.+||+.+--++ .+..++-+|..|.|+.||++||+|
T Consensus 173 ILsypsL---kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 173 ILSYPSL---KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEecccc---ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence 9998866 788899999999999999999999999999999999999987766 667899999999999999999999
Q ss_pred ecCCcEEE
Q 003279 825 SHDKCVKI 832 (834)
Q Consensus 825 s~DG~I~I 832 (834)
+.|..|-|
T Consensus 250 SEDh~IDI 257 (313)
T KOG1407|consen 250 SEDHFIDI 257 (313)
T ss_pred CccceEEe
Confidence 99998854
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.4e-24 Score=243.01 Aligned_cols=245 Identities=18% Similarity=0.269 Sum_probs=191.0
Q ss_pred EEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCC-------eEEEEeccCCCCeEEEEECCCC-CEEEEEeCCC
Q 003279 546 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADR 616 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~IWd~~t~-------~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg 616 (834)
..+.+|.+.|++++|+| ++.+||+|+.|++|+|||+.++ +.+..+.+|...|.+++|+|++ .+|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 45789999999999999 8899999999999999999764 3567889999999999999975 6999999999
Q ss_pred eEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC--eeEEEEecCCCEE
Q 003279 617 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRI 694 (834)
Q Consensus 617 ~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~--i~~l~~sp~g~~l 694 (834)
+|+|||+.++. .+..+.+|...|.+++|+|++. +|++++.|+.|++||+++++.+..+..+.. +..+.|.+++..+
T Consensus 149 tVrIWDl~tg~-~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 149 VVNVWDVERGK-AVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred EEEEEECCCCe-EEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence 99999999865 4677888999999999999976 777999999999999999998887765433 4567889988888
Q ss_pred EEEEc----CCeEEEEECCCCe-EEEEEeC-CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeec-CC
Q 003279 695 LAAAI----ENYISILDVETQV-CRLKLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC-TG 765 (834)
Q Consensus 695 l~~s~----dg~I~iwDl~t~~-~~~~l~~-h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~-~~ 765 (834)
++++. |+.|++||+++.. ++..... +...+....|++++.+|++++ |+.|++||+.++. .+..... +.
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~---~~~~~~~~s~ 303 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER---LTFCSSYSSV 303 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc---eEEEeeccCC
Confidence 87653 6899999998754 3333332 334566678999999888765 8999999999873 3333322 34
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003279 766 NKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 797 (834)
Q Consensus 766 ~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~ 797 (834)
.++..++|.|.-. +-...-...++|.+...
T Consensus 304 ~~~~g~~~~pk~~--~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 304 EPHKGLCMMPKWS--LDTRKCEIARFYALTYH 333 (493)
T ss_pred CCCcceEeccccc--ccccceeeeEEEEecCC
Confidence 5677888888532 11222224455655444
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-25 Score=255.82 Aligned_cols=284 Identities=21% Similarity=0.311 Sum_probs=230.4
Q ss_pred ceEEecc--CCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 504 RFVDDGS--LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 504 ~~l~~Gs--~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
..+++|+ .|+.+++|...--. .+. ....-..-..+.+...|.+.|+|+.|++||++||+|++|+.|.||..
T Consensus 26 ~~~aTgGq~~d~~~~iW~~~~vl--~~~-----~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~ 98 (942)
T KOG0973|consen 26 VKFATGGQVLDGGIVIWSQDPVL--DEK-----EEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWER 98 (942)
T ss_pred eeEecCCccccccceeecccccc--chh-----hhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeee
Confidence 4568888 88888888332110 000 00011122456778899999999999999999999999999999976
Q ss_pred C------------------CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEE
Q 003279 582 E------------------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 643 (834)
Q Consensus 582 ~------------------t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl 643 (834)
. ..+.+..+.+|...|.+++|+|++.+|++++.|++|.|||..+. ..+..+.+|.+.|..+
T Consensus 99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGv 177 (942)
T KOG0973|consen 99 AEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGV 177 (942)
T ss_pred cccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeeeeecccccccce
Confidence 5 23567888999999999999999999999999999999999998 5689999999999999
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-------CCCeeEEEEecCCCEEEEEEc----CCeEEEEECCCCe
Q 003279 644 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRLGRILAAAI----ENYISILDVETQV 712 (834)
Q Consensus 644 ~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-------~~~i~~l~~sp~g~~ll~~s~----dg~I~iwDl~t~~ 712 (834)
.|.|-|+ +||+-+.|++|+||++.+..+.+.+.. ...+..+.|+|||.+|++... ...+.|++-.+.+
T Consensus 178 s~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk 256 (942)
T KOG0973|consen 178 SWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWK 256 (942)
T ss_pred EECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCce
Confidence 9999987 777999999999999887766666653 234788999999999998765 2479999999999
Q ss_pred EEEEEeCCCCCEEEEEEcCC-----CC------------EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEe
Q 003279 713 CRLKLQGHKNQVHSVCWNTS-----GE------------YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 774 (834)
Q Consensus 713 ~~~~l~~h~~~I~sl~~spd-----g~------------~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafs 774 (834)
.-..|-+|..++.++.|+|. .. .+|+|+ |++|.||......+...++ ......|..++|+
T Consensus 257 ~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~--~lf~~SI~DmsWs 334 (942)
T KOG0973|consen 257 VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH--NLFNKSIVDMSWS 334 (942)
T ss_pred eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh--hhhcCceeeeeEc
Confidence 99999999999999999981 11 566677 9999999987664333333 3346789999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCe
Q 003279 775 PTFPSLLVIGCYETLELWNMTENK 798 (834)
Q Consensus 775 pdg~~L~sgs~dg~I~Iwdl~~~~ 798 (834)
|||-.|++++.||+|.++.++..+
T Consensus 335 pdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 335 PDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCCCeEEEEecCCeEEEEEcchHH
Confidence 999999999999999999987643
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=221.27 Aligned_cols=249 Identities=20% Similarity=0.315 Sum_probs=208.2
Q ss_pred eeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCC-CCeEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCeE
Q 003279 542 FTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTV 618 (834)
Q Consensus 542 ~~~~~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~IWd~~-t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I 618 (834)
+.+...+.. .+.+..++|+++. ..+++++.||+++|||+. ..+++..+++|...|.++.|++ ++..++++|.|++|
T Consensus 51 i~e~~s~d~-~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~Ti 129 (311)
T KOG0277|consen 51 IQECQSYDT-EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTI 129 (311)
T ss_pred eEEEEeeec-ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCce
Confidence 344555543 3459999999954 478889999999999964 3467888999999999999998 46678899999999
Q ss_pred EEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-CceeeEeecCCCeeEEEEec-CCCEEEE
Q 003279 619 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQP-RLGRILA 696 (834)
Q Consensus 619 ~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s-~~~i~~~~~~~~i~~l~~sp-~g~~ll~ 696 (834)
++|+...+. .+.++.+|..-|....|+|....++++++.|+++++||++. |+.+....+...+.|+.|+. +...+++
T Consensus 130 KLW~~~r~~-Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~T 208 (311)
T KOG0277|consen 130 KLWDPNRPN-SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLAT 208 (311)
T ss_pred EeecCCCCc-ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEe
Confidence 999998765 58999999999999999999999999999999999999986 45444333455899999987 4566778
Q ss_pred EEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003279 697 AAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 773 (834)
Q Consensus 697 ~s~dg~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svaf 773 (834)
++.|+.|++||+++- .++.++.+|.-.|..+.|||.. .+|++++ |-+++|||..... .++.+...|..-+..+.|
T Consensus 209 g~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s~~e~~~~HtEFv~g~Dw 286 (311)
T KOG0277|consen 209 GGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--SAIETVDHHTEFVCGLDW 286 (311)
T ss_pred cCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--hhhhhhhccceEEecccc
Confidence 888999999999975 6788899999999999999964 5788888 9999999998653 456667778888888999
Q ss_pred eCC-CCEEEEEEcCCeEEEEEC
Q 003279 774 HPT-FPSLLVIGCYETLELWNM 794 (834)
Q Consensus 774 spd-g~~L~sgs~dg~I~Iwdl 794 (834)
++- ...++.++.|+.++||+.
T Consensus 287 s~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 287 SLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccCceeeecccccceeeecc
Confidence 884 567899999999999984
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-23 Score=225.37 Aligned_cols=264 Identities=13% Similarity=0.111 Sum_probs=208.3
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEecCCCCceeeeeccCCCCeEE
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 642 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~s 642 (834)
++++++++.|+.|++||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||+.++.. ...+..+. .+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~-~~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-IGTLPSGP-DPEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcE-EEeccCCC-CccE
Confidence 35788999999999999999998888876544 6789999999876 5667889999999987654 44444333 3577
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEEeCCC
Q 003279 643 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHK 721 (834)
Q Consensus 643 l~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg-~I~iwDl~t~~~~~~l~~h~ 721 (834)
++|+|+++.++++++.++.|++||+.+.+.+..+.....+.+++|+|++..++++..++ .+.+||.++++....+. ..
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~ 156 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VD 156 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cC
Confidence 89999998777777788999999999988888877666678999999999999888765 57788999887766554 23
Q ss_pred CCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecC-------CCceEEEEEeCCCCEEEEE-EcCCeEEE
Q 003279 722 NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCVFHPTFPSLLVI-GCYETLEL 791 (834)
Q Consensus 722 ~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~-------~~~I~svafspdg~~L~sg-s~dg~I~I 791 (834)
..+.+++|++++.+|++++ ++.|++||+.++ +.+..+..+ ......++|+|++++++++ +.++.|.+
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR---KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc---eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 4567899999999886554 889999999987 343333221 1123568899999986664 45668999
Q ss_pred EECCCCeEEEeccCCCCeEEEEEeCCCCEEEEE-ecCCcEEEeC
Q 003279 792 WNMTENKTLTLSAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK 834 (834)
Q Consensus 792 wdl~~~~~~~l~~h~~~V~~lafspdg~~LaSg-s~DG~I~IWd 834 (834)
||+.+++.+....+...+.+++|+|++++|+++ +.+|.|+|||
T Consensus 234 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 234 VDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred EECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 999998887554566789999999999999876 4689999997
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=220.23 Aligned_cols=269 Identities=19% Similarity=0.265 Sum_probs=222.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee
Q 003279 551 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 630 (834)
Q Consensus 551 H~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i 630 (834)
..+.|+++.|+|.+..|++++.||.+++||+........+ .|..++.+++|.+ ...+++|+-||.|+++|+.++. .
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~--~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN--E 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCc--c
Confidence 4567999999999999999999999999999987665555 5899999999986 4679999999999999999866 4
Q ss_pred eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003279 631 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 710 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t 710 (834)
..+..|...|.||.+++... .+++|+.|++|++||.+.......+.....|.++... ++.|++|+.+..|.+||+++
T Consensus 88 ~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence 66778999999999997654 6779999999999999987777777777778777765 67899999999999999998
Q ss_pred CeEEEEEe--CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC-CceeEEEeecCC---------CceEEEEEeCCC
Q 003279 711 QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS-KGECIHELSCTG---------NKFHSCVFHPTF 777 (834)
Q Consensus 711 ~~~~~~l~--~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~-~~~~i~~~~~~~---------~~I~svafspdg 777 (834)
........ .-+..+.||++.|++.-+++++ ||.|.+=.++... .......|++|. .+|++++|+|-.
T Consensus 165 ~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~ 244 (323)
T KOG1036|consen 165 LDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH 244 (323)
T ss_pred ccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence 75544322 2445789999999888788888 9988887776541 112333455553 468999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEec
Q 003279 778 PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASH 826 (834)
Q Consensus 778 ~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~ 826 (834)
..|++|+.||.|.+||+.+.+.+ .+...+..|..++|+.||..||+++.
T Consensus 245 ~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 245 GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99999999999999999988877 55566778999999999999999874
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-25 Score=223.44 Aligned_cols=287 Identities=13% Similarity=0.224 Sum_probs=230.6
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
.++++|+.|..|++++...--. +.....+...........+++|-.|.++|+++.|+|....|++|+.|++|++||+..
T Consensus 125 ~lvATGsaD~SIKildvermla-ks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK 203 (430)
T KOG0640|consen 125 SLVATGSADASIKILDVERMLA-KSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSK 203 (430)
T ss_pred cEEEccCCcceEEEeehhhhhh-hcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEeccc
Confidence 7999999999999996542211 111111222222223356889999999999999999999999999999999999886
Q ss_pred CeEEEEec--cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceee--eeccCCCCeEEEEEccCCCcEEEEEeCC
Q 003279 584 FTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR--TFTGHSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 584 ~~~~~~l~--~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~--~~~~h~~~V~sl~fspdg~~llasgs~D 659 (834)
-...+.++ ....+|.+|.|+|.|.+|+.|..-.++++||+++-.+-+. .-..|.+.|+++.+++.+. +.++++.|
T Consensus 204 ~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkD 282 (430)
T KOG0640|consen 204 TSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKD 282 (430)
T ss_pred HHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCcc-EEEEeccC
Confidence 44433322 3456899999999999999999999999999998654222 2346899999999999977 67799999
Q ss_pred CcEEEEECCCCceeeEeec---CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC--C---CEEEEEEcC
Q 003279 660 SEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK--N---QVHSVCWNT 731 (834)
Q Consensus 660 g~I~lwDl~s~~~i~~~~~---~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~--~---~I~sl~~sp 731 (834)
|.|++||--+++|+.++.. ...|++..|..+++++++.+.|..+++|.+.+++++..+.+.. + .-+...|+.
T Consensus 283 G~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNh 362 (430)
T KOG0640|consen 283 GAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNH 362 (430)
T ss_pred CcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcC
Confidence 9999999999999998874 4569999999999999999999999999999999999987642 1 224556788
Q ss_pred CCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 732 SGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 732 dg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
...|++.-. .+.+.-||.++... ....-.+|.+.+..+.-+|.++-+++++.|-.+++|--
T Consensus 363 tEdyVl~pDEas~slcsWdaRtadr--~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 363 TEDYVLFPDEASNSLCSWDARTADR--VALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred ccceEEccccccCceeeccccchhh--hhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 888888776 56899999998743 22233578999999999999999999999999999964
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-24 Score=218.09 Aligned_cols=285 Identities=19% Similarity=0.264 Sum_probs=214.3
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE--EEe--ccCCCCeEEEEECCCCCEEE-EEeCCCeEE
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STL--EEHTQWITDVRFSPSLSRLA-TSSADRTVR 619 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~--~~l--~~h~~~I~~l~fspdg~~La-tgs~Dg~I~ 619 (834)
+..|++|.+.|+|++|+.||++||+++.|++|+||++++.... +.+ ...-+--+.++|.||-+-++ .+-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4678899999999999999999999999999999998864322 111 11223467899999976554 444566899
Q ss_pred EEecCCCC---cee--------eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEE
Q 003279 620 VWDTENPD---YSL--------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRF 687 (834)
Q Consensus 620 IWDl~s~~---~~i--------~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~ 687 (834)
+|.+...+ ... .....|.-.|..+-...+ ..++++++.|..|.+|+++ |+.+..+.. ...-+..+.
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 99876322 111 122335556666666544 4578899999999999999 888877765 345677899
Q ss_pred ecCCCEEEEEEcCCeEEEEECC---CC-----eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC----CC
Q 003279 688 QPRLGRILAAAIENYISILDVE---TQ-----VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG----SK 754 (834)
Q Consensus 688 sp~g~~ll~~s~dg~I~iwDl~---t~-----~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~----~~ 754 (834)
+|+|+++++++..-.|++|.+- .| ..+..+++|...|+.++|+++...+++.+ ||+++|||+.-. ..
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999999999999863 22 34677899999999999999999999999 999999998632 12
Q ss_pred ceeEEEe----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--EeccCCCCeEEEEEeCCCCEEEEEecCC
Q 003279 755 GECIHEL----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDK 828 (834)
Q Consensus 755 ~~~i~~~----~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~--~l~~h~~~V~~lafspdg~~LaSgs~DG 828 (834)
.+.+.+. .........+.++|.|..|+++. ...|++|..++++.. ....|...|.+|+|+++|++++||++ .
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd-r 394 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD-R 394 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc-e
Confidence 2222222 22334445899999999666554 457999999998877 33479999999999999999999864 5
Q ss_pred cEEEe
Q 003279 829 CVKIW 833 (834)
Q Consensus 829 ~I~IW 833 (834)
.+++.
T Consensus 395 ~vrv~ 399 (420)
T KOG2096|consen 395 YVRVI 399 (420)
T ss_pred eeeee
Confidence 56553
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-23 Score=233.81 Aligned_cols=309 Identities=16% Similarity=0.278 Sum_probs=249.8
Q ss_pred eEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 003279 505 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 584 (834)
Q Consensus 505 ~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~ 584 (834)
-+..|+.++.+.+|..... +.+.++.++...|+++.=+|-=..+|.|..+|+|.|++++.+
T Consensus 174 KIvvGs~~G~lql~Nvrt~-------------------K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d 234 (910)
T KOG1539|consen 174 KIVVGSSQGRLQLWNVRTG-------------------KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD 234 (910)
T ss_pred eEEEeecCCcEEEEEeccC-------------------cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC
Confidence 3456777777777744332 457888899999999999998889999999999999999999
Q ss_pred eEEEEeccCCCCeEEEEECCCCCE-EEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 003279 585 TVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 663 (834)
Q Consensus 585 ~~~~~l~~h~~~I~~l~fspdg~~-Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 663 (834)
+.+.+++...+.|+.+.|.-||.. +++|+..|.+.+||++..+........|.+.|..+.|.|... ++++++.|+.++
T Consensus 235 kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk 313 (910)
T KOG1539|consen 235 KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLK 313 (910)
T ss_pred cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc-eEeeccCCCcee
Confidence 999999855699999999999875 556666799999999987655555557777777777777643 666777777666
Q ss_pred EEECCCCc-----------------eee----------------------------------------------------
Q 003279 664 YWSINNGS-----------------CAG---------------------------------------------------- 674 (834)
Q Consensus 664 lwDl~s~~-----------------~i~---------------------------------------------------- 674 (834)
+|=.+++. +++
T Consensus 314 ~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~ 393 (910)
T KOG1539|consen 314 VWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKL 393 (910)
T ss_pred EEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhh
Confidence 65322110 000
Q ss_pred --------------------------------------------EeecC------CCeeEEEEecCCCEEEEEEcCCeEE
Q 003279 675 --------------------------------------------VFKCQ------SGATQMRFQPRLGRILAAAIENYIS 704 (834)
Q Consensus 675 --------------------------------------------~~~~~------~~i~~l~~sp~g~~ll~~s~dg~I~ 704 (834)
.+... ..+++++.++.|++.+.|...|.|.
T Consensus 394 k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id 473 (910)
T KOG1539|consen 394 KLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTID 473 (910)
T ss_pred cCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEE
Confidence 11111 2367889999999999999999999
Q ss_pred EEECCCCeEEEEE---eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc-------------------------
Q 003279 705 ILDVETQVCRLKL---QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG------------------------- 755 (834)
Q Consensus 705 iwDl~t~~~~~~l---~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~------------------------- 755 (834)
+|++.+|.....+ ..|..+|++++.+.-++.+++++ +|.+++||+.+....
T Consensus 474 ~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ 553 (910)
T KOG1539|consen 474 RFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL 553 (910)
T ss_pred EEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc
Confidence 9999999988888 47999999999999888888888 999999998764210
Q ss_pred -------------eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEE
Q 003279 756 -------------ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA 822 (834)
Q Consensus 756 -------------~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~La 822 (834)
+.++.+.+|.+.|++++|||||++|++++.|++|++||+.++..+-....+.+.+.+.|+|+|.+||
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LA 633 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLA 633 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEE
Confidence 1122456789999999999999999999999999999999999997778889999999999999999
Q ss_pred EEecC-CcEEEe
Q 003279 823 SASHD-KCVKIW 833 (834)
Q Consensus 823 Sgs~D-G~I~IW 833 (834)
|+..| .-|++|
T Consensus 634 T~Hvd~~gIylW 645 (910)
T KOG1539|consen 634 TVHVDQNGIYLW 645 (910)
T ss_pred EEEecCceEEEE
Confidence 99988 569999
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=230.42 Aligned_cols=294 Identities=20% Similarity=0.279 Sum_probs=230.4
Q ss_pred ccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccC-CCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 003279 493 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG-KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG 571 (834)
Q Consensus 493 ~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~-~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs 571 (834)
.+....+...+.++.+++.|++|.-|........+....+.-... .+..+.+-. ++|...|.+++.|+||+|||+|+
T Consensus 144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r--~~h~keil~~avS~Dgkylatgg 221 (479)
T KOG0299|consen 144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR--KGHVKEILTLAVSSDGKYLATGG 221 (479)
T ss_pred cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc--ccccceeEEEEEcCCCcEEEecC
Confidence 333344455567888999999999996655443322222210001 233333322 49999999999999999999999
Q ss_pred CCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCc
Q 003279 572 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 651 (834)
Q Consensus 572 ~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~ 651 (834)
.|..|.||+..+.+.+..+.+|.+.|.+++|-.....|++++.|++|++|+++...+ +.++.+|.+.|..|....- ..
T Consensus 222 ~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~-vetlyGHqd~v~~IdaL~r-eR 299 (479)
T KOG0299|consen 222 RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY-VETLYGHQDGVLGIDALSR-ER 299 (479)
T ss_pred CCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-HHHHhCCccceeeechhcc-cc
Confidence 999999999999999999999999999999998888999999999999999997655 7889999999999988765 44
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC------------
Q 003279 652 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG------------ 719 (834)
Q Consensus 652 llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~------------ 719 (834)
++.+|+.|+++++|++.....+....+.+.+.|++|-.+ .+|++|+.+|.|.+|++-+.+++++...
T Consensus 300 ~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~ 378 (479)
T KOG0299|consen 300 CVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVN 378 (479)
T ss_pred eEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccc
Confidence 777788999999999965554444445667899998876 7899999999999999999888876542
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEE
Q 003279 720 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELW 792 (834)
Q Consensus 720 h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~svafspdg~~L~sgs~d-g~I~Iw 792 (834)
++.+|++++..|...++++|+ +|.|++|-+..+-. ..++..+. -.+.|++++|+++|++|+++... ..+--|
T Consensus 379 ~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 379 GNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred cccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccccccccee
Confidence 223899999999999999999 99999999988732 34455555 56789999999999977776443 344334
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-23 Score=201.21 Aligned_cols=290 Identities=18% Similarity=0.276 Sum_probs=231.3
Q ss_pred cccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003279 498 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 577 (834)
Q Consensus 498 ~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~ 577 (834)
.+.....+.++|+...+.++-.-++-.+.+. .-+..+..+....+.-+.|.+.|+|.+|+|+|.+||+|+.|++|+
T Consensus 39 ~fhp~g~lyavgsnskt~ric~yp~l~~~r~----~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik 114 (350)
T KOG0641|consen 39 AFHPAGGLYAVGSNSKTFRICAYPALIDLRH----AHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIK 114 (350)
T ss_pred EecCCCceEEeccCCceEEEEccccccCccc----ccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEE
Confidence 3344447889999998888874444333221 112223333445566678999999999999999999999999999
Q ss_pred EEeCCC--CeE---EEEeccCCCCeEEEEECCC----CCEEEEEe-CCCeEEEEecCCCCceeeeeccCCCCeEEE-EEc
Q 003279 578 LWCTES--FTV---KSTLEEHTQWITDVRFSPS----LSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSL-DFH 646 (834)
Q Consensus 578 IWd~~t--~~~---~~~l~~h~~~I~~l~fspd----g~~Latgs-~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl-~fs 646 (834)
+.-... ... ...+.-|.+.|.+++|..+ +.+|++++ .|..|++-|...+.. +..+.+|.+.|.++ .|+
T Consensus 115 ~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~-~~a~sghtghilalyswn 193 (350)
T KOG0641|consen 115 VLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG-FHALSGHTGHILALYSWN 193 (350)
T ss_pred EEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc-ceeecCCcccEEEEEEec
Confidence 875443 222 2456679999999999754 55677665 467788888887654 88899999999887 454
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCceeeEeec--------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 003279 647 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 718 (834)
Q Consensus 647 pdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~--------~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~ 718 (834)
..++++|+.|.+|++||++-..++.++.. .+.|..+++.|.|+.+++|-.|....+||++.++.+..+.
T Consensus 194 ---~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ 270 (350)
T KOG0641|consen 194 ---GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH 270 (350)
T ss_pred ---CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC
Confidence 45899999999999999999998887753 2458899999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 719 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 719 ~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
.|...|.|+.|+|...|+.+|+ |..|++-|+...-. ...+..+..|...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 271 phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 271 PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 9999999999999999999999 99999999875321 13445566788999999999999889999999999999764
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-24 Score=237.77 Aligned_cols=239 Identities=21% Similarity=0.317 Sum_probs=212.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 630 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i 630 (834)
...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|. +..+.+|+.|+.|..+|++......
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 78899999999999999999999999999999999999988 99999999997 6789999999999999999877655
Q ss_pred eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecC-CCEEEEEEc--CCeEEEE
Q 003279 631 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPR-LGRILAAAI--ENYISIL 706 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~-g~~ll~~s~--dg~I~iw 706 (834)
..+.+|...|..+.|++|+. .+++|+.|+.+.|||.....+...+. |...|..++|+|- .+.|++|+. |+.|++|
T Consensus 295 ~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred hhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 66889999999999999976 78899999999999997666555554 5677999999995 455555543 8999999
Q ss_pred ECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003279 707 DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 707 Dl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sg 783 (834)
|..++..+..+. ....|.+|.|++..+-|+++. ++.|.||++.+. ..+..+.+|...|..++++|||..|+++
T Consensus 374 n~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~~l~gH~~RVl~la~SPdg~~i~t~ 449 (484)
T KOG0305|consen 374 NTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVAELLGHTSRVLYLALSPDGETIVTG 449 (484)
T ss_pred EcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceeeeecCCcceeEEEEECCCCCEEEEe
Confidence 999999988876 567899999999987666654 779999999886 7888999999999999999999999999
Q ss_pred EcCCeEEEEECCCC
Q 003279 784 GCYETLELWNMTEN 797 (834)
Q Consensus 784 s~dg~I~Iwdl~~~ 797 (834)
+.|.++++|++-+.
T Consensus 450 a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 450 AADETLRFWNLFDE 463 (484)
T ss_pred cccCcEEeccccCC
Confidence 99999999998764
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-25 Score=241.58 Aligned_cols=316 Identities=15% Similarity=0.227 Sum_probs=255.4
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
..+++.+|+.|+.++.|....+... ..-.....+..|.+.|..+....+|+.|++++.|-+|++|+.
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~-------------~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~ 102 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNE-------------PSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNA 102 (735)
T ss_pred CCceEEecCCCceEEEeccccccCC-------------cccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeec
Confidence 3468999999999999965544211 011135678899999999999999999999999999999999
Q ss_pred CCC--eEEEEeccCCCCeEEEEE-CCCCCEEEEEeCCCeEEEEecCCCCc---------eeeeec-cCCCCeEEEEEccC
Q 003279 582 ESF--TVKSTLEEHTQWITDVRF-SPSLSRLATSSADRTVRVWDTENPDY---------SLRTFT-GHSTTVMSLDFHPS 648 (834)
Q Consensus 582 ~t~--~~~~~l~~h~~~I~~l~f-spdg~~Latgs~Dg~I~IWDl~s~~~---------~i~~~~-~h~~~V~sl~fspd 648 (834)
..+ -++.++..|.+.|.|+++ .++...+|+|+-|+.|.|||++++.. ....+. ++...|++++..+.
T Consensus 103 ~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t 182 (735)
T KOG0308|consen 103 HKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT 182 (735)
T ss_pred ccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc
Confidence 877 577889999999999999 78889999999999999999996521 122333 78899999999998
Q ss_pred CCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEE
Q 003279 649 KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSV 727 (834)
Q Consensus 649 g~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl 727 (834)
+ .++++|+..+.|++||.++++.+..+.. ...|.++..+++|..++++++||+|++||+...+|+.++..|...|.++
T Consensus 183 ~-t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL 261 (735)
T KOG0308|consen 183 G-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWAL 261 (735)
T ss_pred c-eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEE
Confidence 7 5888999999999999999888777764 5669999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-----
Q 003279 728 CWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT----- 801 (834)
Q Consensus 728 ~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~----- 801 (834)
..+|+-.++++|+ |+.|+.-|+++...... +-....+|..+..+....-+.+++.|+.|+-|...-...+.
T Consensus 262 ~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tl---ick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~ 338 (735)
T KOG0308|consen 262 QSSPSFTHVYSGGRDGNIYRTDLRNPAKSTL---ICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDL 338 (735)
T ss_pred eeCCCcceEEecCCCCcEEecccCCchhheE---eecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCC
Confidence 9999999999999 99999999998632222 22245677777777666666888889999999764221110
Q ss_pred --------------------eccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 802 --------------------LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 802 --------------------l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.......|...+.-.|.++++|=..+|.+.+||
T Consensus 339 ~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 339 DFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWD 391 (735)
T ss_pred CcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEE
Confidence 001112233444556778999999999999997
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=237.23 Aligned_cols=316 Identities=14% Similarity=0.188 Sum_probs=244.7
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC-----------CCEEEEE
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-----------GKLLATG 570 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpd-----------g~~Lasg 570 (834)
....+.|--.|..+.+|+..|-..... ...+--|...|+.+.--|. ...++|+
T Consensus 335 t~~klscVYndhSlYvWDvrD~~kvgk----------------~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TC 398 (1080)
T KOG1408|consen 335 TTDKLSCVYNDHSLYVWDVRDVNKVGK----------------CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTC 398 (1080)
T ss_pred CCceEEEEEcCceEEEEeccccccccc----------------eeeeeeccceeeeeccccccccCcccccCCccceeEe
Confidence 346778888999999998877543321 2233346666666554441 1258899
Q ss_pred eCCCcEEEEeCCCCeEEEE-------------------------------------eccCCCCeEEEEECCCCCEEEEEe
Q 003279 571 GHDKKAVLWCTESFTVKST-------------------------------------LEEHTQWITDVRFSPSLSRLATSS 613 (834)
Q Consensus 571 s~Dg~I~IWd~~t~~~~~~-------------------------------------l~~h~~~I~~l~fspdg~~Latgs 613 (834)
+.|++|++||++.+..-.+ ..+....|.+++.+|++.+||+|.
T Consensus 399 SsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGD 478 (1080)
T KOG1408|consen 399 SSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGD 478 (1080)
T ss_pred cCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccC
Confidence 9999999999875211000 002334689999999999999999
Q ss_pred CCCeEEEEecCCCCceeeeeccCCCCeEEEEEccC--CCcEEEEEeCCCcEEEEECCC-CceeeEeec-CCCeeEEEEec
Q 003279 614 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-QSGATQMRFQP 689 (834)
Q Consensus 614 ~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspd--g~~llasgs~Dg~I~lwDl~s-~~~i~~~~~-~~~i~~l~~sp 689 (834)
.-|+++||++.+-.+ ......|...|.|+.|+.. +..+|++++.|..|.|||+.. ...+.++.. ...|+++.|..
T Consensus 479 r~GnlrVy~Lq~l~~-~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~ 557 (1080)
T KOG1408|consen 479 RGGNLRVYDLQELEY-TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC 557 (1080)
T ss_pred ccCceEEEEehhhhh-hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee
Confidence 999999999987654 6677889999999999852 456899999999999999964 345555554 66799999988
Q ss_pred CC--CEEEEEEcCCeEEEEECCCCeEEEEEeC-----CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe
Q 003279 690 RL--GRILAAAIENYISILDVETQVCRLKLQG-----HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 761 (834)
Q Consensus 690 ~g--~~ll~~s~dg~I~iwDl~t~~~~~~l~~-----h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~ 761 (834)
.| ..+++++.|..|.+--.........+.. ....++.++..|..++++++. |..|+|||+.+++..+.+.--
T Consensus 558 ~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs 637 (1080)
T KOG1408|consen 558 NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS 637 (1080)
T ss_pred cCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccc
Confidence 77 6788888888776543332111122221 234688999999999999998 999999999999544444444
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 762 SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 762 ~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
..|.+....+...|.|.||++.+.|.+|.+||..+++++ ...+|...|+.+.|.+|.+.|++++.||+|.||+
T Consensus 638 ~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 638 RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred ccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 556788899999999999999999999999999999999 7889999999999999999999999999999995
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-24 Score=236.76 Aligned_cols=275 Identities=16% Similarity=0.266 Sum_probs=232.1
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE--EEeccCCCCeEE-EEECC-CCCEEEEEeCCCeE
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITD-VRFSP-SLSRLATSSADRTV 618 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~--~~l~~h~~~I~~-l~fsp-dg~~Latgs~Dg~I 618 (834)
..-+.+.||...|..|++.++. +++++++||++++|+-.....+ ..+.+|.+.|.+ ++|.+ ++-.|++|+.|.+|
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 3457789999999999987654 8999999999999997554443 456788888888 88886 55569999999999
Q ss_pred EEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEE
Q 003279 619 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 619 ~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~ 697 (834)
.+|...... ++.++.+|...|+|++...++. +++|+.|.++++|-+. ++...+. |...|..+...|+. .+++|
T Consensus 84 ~v~~~~~~~-P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTg 157 (745)
T KOG0301|consen 84 IVFKLSQAE-PLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTG 157 (745)
T ss_pred EEEecCCCC-chhhhhccccceeeeecCCcCc--eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEec
Confidence 999998754 6899999999999999876654 6799999999999775 3333344 46678999999986 89999
Q ss_pred EcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003279 698 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 777 (834)
Q Consensus 698 s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg 777 (834)
+.|..|++|.- ++++.+|.+|.+.|+.+++-+++.+|.++.||.|++|++ ++ +++.+..+|..-++++....++
T Consensus 158 saDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~g---e~l~~~~ghtn~vYsis~~~~~ 231 (745)
T KOG0301|consen 158 SADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DG---EVLLEMHGHTNFVYSISMALSD 231 (745)
T ss_pred cCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cC---ceeeeeeccceEEEEEEecCCC
Confidence 99999999986 678899999999999999999888887777999999999 44 6899999999999999988888
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEeccCCC-CeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 778 PSLLVIGCYETLELWNMTENKTLTLSAHDK-LVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 778 ~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~-~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
..|++++.|++++||+.. ++.....|.. .|+++++-++|. |++|+.||.|+||
T Consensus 232 ~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 232 GLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF 285 (745)
T ss_pred CeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence 899999999999999977 5554444544 899999988776 6778899999998
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-24 Score=227.19 Aligned_cols=282 Identities=17% Similarity=0.248 Sum_probs=237.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCeEEEEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCCc
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDY 628 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~--t~~~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~IWDl~s~~~ 628 (834)
.+.|+|+.|+|...+|++|+.|++++||-++ ....+..+.-...+|.+++|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4679999999999999999999999999765 4456677767778999999999999 899999999999999987654
Q ss_pred e-eeeeccCC-CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 003279 629 S-LRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL 706 (834)
Q Consensus 629 ~-i~~~~~h~-~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iw 706 (834)
. +....++. ..+..+..++++. +|+..+..|.|.+....+++.+..++..+.+..++|+.+++.|++++.+|.|++|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred ccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 2 22233333 4577788899987 6668888999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEeCCCC-CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC---CCceeEEEeecCCCceEEEEEeCCCCEEE
Q 003279 707 DVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS-DELVRVWSIGSG---SKGECIHELSCTGNKFHSCVFHPTFPSLL 781 (834)
Q Consensus 707 Dl~t~~~~~~l~~h~~-~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~---~~~~~i~~~~~~~~~I~svafspdg~~L~ 781 (834)
|++...+++.+....+ .-+++|.++++.|||+|+ .|.|.|||..+. ...+++..+..-...|+++.|+++...|+
T Consensus 372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLA 451 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILA 451 (514)
T ss_pred ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhh
Confidence 9999999988874322 235788889999999999 889999997643 33567777777788999999999999888
Q ss_pred EEEc--CCeEEEEECCCCeEE-Eec---cCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 782 VIGC--YETLELWNMTENKTL-TLS---AHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 782 sgs~--dg~I~Iwdl~~~~~~-~l~---~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.++. ++.+++..+.+..+. .+. ..-+.|+|++|+|.+.+||.|..+|.|.+|+
T Consensus 452 iaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 452 IASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 8776 458999999887776 222 3346799999999999999999999999995
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.2e-24 Score=225.93 Aligned_cols=277 Identities=18% Similarity=0.262 Sum_probs=234.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---eEEEEec--cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~---~~~~~l~--~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 624 (834)
.|..-|.++.+|...++++||+. |.|+|||+... .++..+. .....|.++.+.|||+.|++|++-.+|.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 68888999999999999999986 89999998742 2333332 345679999999999999999999999999998
Q ss_pred CCCceeee-eccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCe
Q 003279 625 NPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENY 702 (834)
Q Consensus 625 s~~~~i~~-~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~ 702 (834)
.....++. +....-....++.+||.+ +.++|..||.|.|||+.+...++.|.. .+++.||.++++|..|.+|+-|++
T Consensus 496 apTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 76643332 233334577889999976 555777799999999999999999985 677999999999999999999999
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 003279 703 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 781 (834)
Q Consensus 703 I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~ 781 (834)
|+.||+++++.+.... ....|.++.++|.+.+|++|. ++.|.|...... ..+.+..|...|.++.|.+.|++++
T Consensus 575 vRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp----~kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP----EKYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred eeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCc----cceeecccccEEEEEEecccCceee
Confidence 9999999987765544 567899999999999999999 778888877654 3445667889999999999999999
Q ss_pred EEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 782 VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 782 sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
+.+.|+-+..|...-|..+.-......|.++.++.|.++|+||+.|....||
T Consensus 650 StGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred ecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEE
Confidence 9999999999999888877666778899999999999999999999887776
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-22 Score=214.85 Aligned_cols=285 Identities=14% Similarity=0.123 Sum_probs=212.4
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEeCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE 582 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~L-asgs~Dg~I~IWd~~ 582 (834)
.++++++.|+.+.+|..... ..+..+..|.. +.+++|+|+++.+ ++++.++.|++||..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~-------------------~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~ 61 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL-------------------EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLA 61 (300)
T ss_pred cEEEEecCCCEEEEEECCCC-------------------ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECC
Confidence 45678888999999964322 12344444543 6789999999976 566788999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEE-eCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC-C
Q 003279 583 SFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-S 660 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D-g 660 (834)
+++.+..+..+.. +..++|+|+++.++++ +.|+.|++||+.+... +..+. +...+.+++|+|++..++ +++.+ .
T Consensus 62 ~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~-~~~~~-~~~~~~~~~~~~dg~~l~-~~~~~~~ 137 (300)
T TIGR03866 62 TGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKV-LAEIP-VGVEPEGMAVSPDGKIVV-NTSETTN 137 (300)
T ss_pred CCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE-EeEee-CCCCcceEEECCCCCEEE-EEecCCC
Confidence 9988877765544 5788999999877655 5689999999987543 44443 234578899999988555 45444 4
Q ss_pred cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEEeCCC-----C--CEEEEEEcCC
Q 003279 661 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHK-----N--QVHSVCWNTS 732 (834)
Q Consensus 661 ~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s-~dg~I~iwDl~t~~~~~~l~~h~-----~--~I~sl~~spd 732 (834)
.+.+||.++++.+..+.....+.++.|++++..+++++ .++.|++||+++++.+..+..+. . ....++|+|+
T Consensus 138 ~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 217 (300)
T TIGR03866 138 MAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD 217 (300)
T ss_pred eEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC
Confidence 67788999888776665556678899999999887665 58999999999998776654321 1 2356889999
Q ss_pred CCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEeccCCCCe
Q 003279 733 GEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLSAHDKLV 809 (834)
Q Consensus 733 g~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs-~dg~I~Iwdl~~~~~~~l~~h~~~V 809 (834)
+++++++. ++.|.+||+.++ +.+..+. +...+.+++|+|++.+|++++ .++.|.+||+.+++++.........
T Consensus 218 g~~~~~~~~~~~~i~v~d~~~~---~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 293 (300)
T TIGR03866 218 GKTAFVALGPANRVAVVDAKTY---EVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLP 293 (300)
T ss_pred CCEEEEEcCCCCeEEEEECCCC---cEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccccc
Confidence 99865543 778999999876 3443332 345788999999999998874 5889999999999987444455777
Q ss_pred EEEEEeC
Q 003279 810 SSLAAST 816 (834)
Q Consensus 810 ~~lafsp 816 (834)
+.++++|
T Consensus 294 ~~~~~~~ 300 (300)
T TIGR03866 294 WGVVVRP 300 (300)
T ss_pred ceeEeCC
Confidence 8888875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.9e-24 Score=215.22 Aligned_cols=276 Identities=20% Similarity=0.319 Sum_probs=221.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeec
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 634 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~ 634 (834)
-.||.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|++||+.|+|+|.|..|.+||+..+.. +..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~-l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP-LKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc-eeEEE
Confidence 78999999999999999999999999999998899999999999999999999999999999999999998874 44443
Q ss_pred cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec------CCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 003279 635 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMRFQPRLGRILAAAIENYISILDV 708 (834)
Q Consensus 635 ~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~------~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl 708 (834)
...+|+.+.|+|...+.++++-.+..-.+.++..++.. .+.. +....+..|++.|++|++|...|.+.+||.
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 67899999999987777766666666666666643221 1211 112344568999999999999999999999
Q ss_pred CCCeEEEEEeCCC-CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC------CceeEEEee--cCCCceEEEEEeCCCC
Q 003279 709 ETQVCRLKLQGHK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------KGECIHELS--CTGNKFHSCVFHPTFP 778 (834)
Q Consensus 709 ~t~~~~~~l~~h~-~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~------~~~~i~~~~--~~~~~I~svafspdg~ 778 (834)
.+.+++..++-.. ..|..+.++..|++|+.-+ |..|+.|+++.-. ..+..+.+. .....-.+|+|+.+|.
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge 262 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE 262 (405)
T ss_pred chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence 9999998887655 7889999999999999877 9999999987321 111112211 1234557899999999
Q ss_pred EEEEEEcC-CeEEEEECCCCeEEEe-ccCC-CCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 779 SLLVIGCY-ETLELWNMTENKTLTL-SAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 779 ~L~sgs~d-g~I~Iwdl~~~~~~~l-~~h~-~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|+++++.. ..++||....|.++++ .+.+ ....++.|+|-...|++- ..|.|+||.
T Consensus 263 Yv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 263 YVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred EEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence 99888754 3899999999998854 4555 568899999998888887 779999994
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.1e-23 Score=236.16 Aligned_cols=229 Identities=17% Similarity=0.233 Sum_probs=177.0
Q ss_pred EEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCe--------EEEEeccCCCCeEEEEECCCCCE-EEEEe
Q 003279 544 EFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFT--------VKSTLEEHTQWITDVRFSPSLSR-LATSS 613 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpd-g~~Lasgs~Dg~I~IWd~~t~~--------~~~~l~~h~~~I~~l~fspdg~~-Latgs 613 (834)
.+..+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++. .+..+.+|...|.+++|+|++.. |++++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 46778999999999999996 7899999999999999997542 34567899999999999998875 57899
Q ss_pred CCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC-eeE-----EEE
Q 003279 614 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQ-----MRF 687 (834)
Q Consensus 614 ~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~-i~~-----l~~ 687 (834)
.|++|+|||+.++.. +..+. |...|.+++|+|+|. +|++++.|+.|++||+++++.+..+..+.. +.. ..|
T Consensus 146 ~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~f 222 (568)
T PTZ00420 146 FDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGL 222 (568)
T ss_pred CCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeE
Confidence 999999999998764 34443 567899999999987 666788899999999999998888775443 222 234
Q ss_pred ecCCCEEEEEEcCC----eEEEEECCC-CeEEEEEe--CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEE
Q 003279 688 QPRLGRILAAAIEN----YISILDVET-QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 759 (834)
Q Consensus 688 sp~g~~ll~~s~dg----~I~iwDl~t-~~~~~~l~--~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~ 759 (834)
++++++|++++.++ .|+|||+++ ..++..+. .+.+.+......+++.++++|. |+.|++|++..+. ...+.
T Consensus 223 s~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~ 301 (568)
T PTZ00420 223 GGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVN 301 (568)
T ss_pred cCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeec
Confidence 58889999988774 799999995 45554443 2333343444455688888887 9999999998752 23333
Q ss_pred EeecCCCceEEEEEeCCC
Q 003279 760 ELSCTGNKFHSCVFHPTF 777 (834)
Q Consensus 760 ~~~~~~~~I~svafspdg 777 (834)
.+. +..++..++|.|..
T Consensus 302 ~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 302 EYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred ccc-cCCCccceEEcccc
Confidence 333 55678889999974
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=222.76 Aligned_cols=273 Identities=21% Similarity=0.295 Sum_probs=225.0
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE----EE---e-----------ccCCCCeEEEEECCCC
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----ST---L-----------EEHTQWITDVRFSPSL 606 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~----~~---l-----------~~h~~~I~~l~fspdg 606 (834)
+..+..|.-+|+||+++||.+++++++.|++|.=|++.+++.. .. + +.|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 6788899999999999999999999999999999998877643 11 0 2688899999999999
Q ss_pred CEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEe-ecCCCeeEE
Q 003279 607 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQM 685 (834)
Q Consensus 607 ~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~-~~~~~i~~l 685 (834)
+||++|+.|..|.||+..+... +..+.+|.+.|.+++|-.. ..-+++++.|+.|++|++.....+.++ .|.+.|..+
T Consensus 215 kylatgg~d~~v~Iw~~~t~eh-v~~~~ghr~~V~~L~fr~g-t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEH-VKVFKGHRGAVSSLAFRKG-TSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCcccch-hhcccccccceeeeeeecC-ccceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 9999999999999999998664 7889999999999999765 445668999999999999987766554 467889999
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec-
Q 003279 686 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC- 763 (834)
Q Consensus 686 ~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~- 763 (834)
.....++.+-+++.|.++++|++.. +....+.+|.+.+-|++|-.+..+ ++|+ +|.|.+|++.+. +++.....
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~Hf-vsGSdnG~IaLWs~~KK---kplf~~~~A 367 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDEHF-VSGSDNGSIALWSLLKK---KPLFTSRLA 367 (479)
T ss_pred chhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecccce-eeccCCceEEEeeeccc---CceeEeecc
Confidence 9888888888888999999999943 445567788999999999866554 5555 999999999876 33333221
Q ss_pred -----------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe----EEEeccCCCCeEEEEEeCCCCEEEEE
Q 003279 764 -----------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK----TLTLSAHDKLVSSLAASTVNGMVASA 824 (834)
Q Consensus 764 -----------~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~----~~~l~~h~~~V~~lafspdg~~LaSg 824 (834)
+...|++++..|....+++|+.+|+|++|-+.++- ++.-....+.|++|+|+++|+.|++|
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 11278999999999999999999999999998872 23333467899999999999966655
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-23 Score=207.94 Aligned_cols=234 Identities=19% Similarity=0.291 Sum_probs=212.3
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 003279 589 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 668 (834)
Q Consensus 589 ~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~ 668 (834)
.+.+|+.+++-|.|+.+|.+|++|+.|.++.||-..+++ .+-++.+|.+.|+|++.+.+.+ .+++|+.|.++++||++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-rlGty~GHtGavW~~Did~~s~-~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-RLGTYDGHTGAVWCCDIDWDSK-HLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-eeeeecCCCceEEEEEecCCcc-eeeeccccceeEEEEcC
Confidence 457899999999999999999999999999999887765 4899999999999999998866 56699999999999999
Q ss_pred CCceeeEeecCCCeeEEEEecCCCEEEEEEcC-----CeEEEEECC-------CCeEEEEEeCCCCCEEEEEEcCCCCEE
Q 003279 669 NGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-----NYISILDVE-------TQVCRLKLQGHKNQVHSVCWNTSGEYL 736 (834)
Q Consensus 669 s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d-----g~I~iwDl~-------t~~~~~~l~~h~~~I~sl~~spdg~~L 736 (834)
+|+++..++.+..|..+.|++++++++++..+ +.|.+||++ ..++...+..+...++.+.|.|-+++|
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 99999999999999999999999998888763 579999998 456788888899999999999999999
Q ss_pred EEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEe
Q 003279 737 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS 815 (834)
Q Consensus 737 asgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafs 815 (834)
++|. ||.|.+||++++. +.+.....|...|+.+.++++..++++++.|.+-++||+.+-.+++....+.+|++.+++
T Consensus 163 i~Ghe~G~is~~da~~g~--~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aais 240 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGK--ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAIS 240 (327)
T ss_pred EEecCCCcEEEEEcccCc--eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecc
Confidence 9999 9999999999984 566666778889999999999999999999999999999999999888889999999999
Q ss_pred CCCCEEEEEec
Q 003279 816 TVNGMVASASH 826 (834)
Q Consensus 816 pdg~~LaSgs~ 826 (834)
|....++.|+.
T Consensus 241 P~~d~VilgGG 251 (327)
T KOG0643|consen 241 PLLDHVILGGG 251 (327)
T ss_pred cccceEEecCC
Confidence 98887777653
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-23 Score=211.95 Aligned_cols=259 Identities=19% Similarity=0.310 Sum_probs=208.6
Q ss_pred EEEEeCCCcEEEEeCCC------------CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeec
Q 003279 567 LATGGHDKKAVLWCTES------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 634 (834)
Q Consensus 567 Lasgs~Dg~I~IWd~~t------------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~ 634 (834)
|++|++...|.-+++.- ..++..+..|.++|++++. ++.++|+||.|-+|+|||+.... .+..+.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~-qlg~ll 80 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK-QLGILL 80 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh-hhccee
Confidence 56677766666665431 2234566789999999999 58899999999999999999755 477888
Q ss_pred cCCCCeEEEEEccCCC-cEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003279 635 GHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQV 712 (834)
Q Consensus 635 ~h~~~V~sl~fspdg~-~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~ 712 (834)
.|.+.|+++.|.+.-. .-|++|+.||.|.+|+.....++..++. ...|+.++++|.++..++.+.|+.+++||+-+|+
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 8999999999998643 1345999999999999999999998885 4559999999999999999999999999999987
Q ss_pred EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003279 713 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 792 (834)
Q Consensus 713 ~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iw 792 (834)
.-..+.- ....+.+.|+|.|.+++.+....|-||.+.+.. ...++.. ...+.++.|- ++..|++|+.++.|.+|
T Consensus 161 ~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~---v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~ 234 (362)
T KOG0294|consen 161 VAFVLNL-KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNAS---VFREIEN-PKRILCATFL-DGSELLVGGDNEWISLK 234 (362)
T ss_pred cceeecc-CCcceeeEEcCCCCEEEEEeccEEEEEecccHh---Hhhhhhc-cccceeeeec-CCceEEEecCCceEEEe
Confidence 6655542 233455999999999999888889999998752 2222222 2445555554 45679999999999999
Q ss_pred ECCCCeEE-EeccCCCCeEEEEE--eCCCCEEEEEecCCcEEEeC
Q 003279 793 NMTENKTL-TLSAHDKLVSSLAA--STVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 793 dl~~~~~~-~l~~h~~~V~~laf--spdg~~LaSgs~DG~I~IWd 834 (834)
|.++..+. .+.+|+..|-++.+ .|++.+|+|++.||.|+|||
T Consensus 235 D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 235 DTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred ccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 99987766 67799999999984 35678999999999999997
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.8e-23 Score=208.08 Aligned_cols=276 Identities=18% Similarity=0.258 Sum_probs=215.7
Q ss_pred cccCCCCCceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecC
Q 003279 471 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 550 (834)
Q Consensus 471 ~~~~~s~~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~g 550 (834)
...++.++.+.+.|++. .+.++++||.|++||+|...+.... . -+....
T Consensus 22 v~~pP~DsIS~l~FSP~--------------~~~~~~A~SWD~tVR~wevq~~g~~----------------~-~ka~~~ 70 (347)
T KOG0647|consen 22 VPNPPEDSISALAFSPQ--------------ADNLLAAGSWDGTVRIWEVQNSGQL----------------V-PKAQQS 70 (347)
T ss_pred cCCCcccchheeEeccc--------------cCceEEecccCCceEEEEEecCCcc----------------c-chhhhc
Confidence 33444556777888872 2478889999999999976654211 0 134457
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCC--EEEEEeCCCeEEEEecCCCCc
Q 003279 551 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPDY 628 (834)
Q Consensus 551 H~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~--~Latgs~Dg~I~IWDl~s~~~ 628 (834)
|.++|.+++|+.||..+++|+.|+.+++||+.++. +..+..|.++|.++.|-+... .|+|||.|++|+.||.+....
T Consensus 71 ~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p 149 (347)
T KOG0647|consen 71 HDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP 149 (347)
T ss_pred cCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe
Confidence 99999999999999999999999999999999984 556678999999999988655 899999999999999997553
Q ss_pred eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeE-ee--cCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003279 629 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK--CQSGATQMRFQPRLGRILAAAIENYISI 705 (834)
Q Consensus 629 ~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~-~~--~~~~i~~l~~sp~g~~ll~~s~dg~I~i 705 (834)
+.++. -.+.|++++.- ..+++++..++.|.+|+++++..... .. ..-.+.|+++..+....+.|+.+|.+.|
T Consensus 150 -v~t~~-LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~i 224 (347)
T KOG0647|consen 150 -VATLQ-LPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAI 224 (347)
T ss_pred -eeeee-ccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEE
Confidence 44443 34667777765 33777888899999999987643322 11 2345899999999888999999999999
Q ss_pred EECCCC--eEEEEEeCCCC---------CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003279 706 LDVETQ--VCRLKLQGHKN---------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 773 (834)
Q Consensus 706 wDl~t~--~~~~~l~~h~~---------~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svaf 773 (834)
..+..+ +.-..|+.|.. .|++|+|+|....|++.+ ||++.+||-... ..+.....+..+|++++|
T Consensus 225 q~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar---~kLk~s~~~~qpItcc~f 301 (347)
T KOG0647|consen 225 QYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR---TKLKTSETHPQPITCCSF 301 (347)
T ss_pred EecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh---hhhhccCcCCCccceeEe
Confidence 988876 44455555542 577899999776676655 999999998776 566777788999999999
Q ss_pred eCCCCEEEEEEcC
Q 003279 774 HPTFPSLLVIGCY 786 (834)
Q Consensus 774 spdg~~L~sgs~d 786 (834)
+.+|.+++.+.+.
T Consensus 302 n~~G~ifaYA~gY 314 (347)
T KOG0647|consen 302 NRNGSIFAYALGY 314 (347)
T ss_pred cCCCCEEEEEeec
Confidence 9999988876553
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-23 Score=230.16 Aligned_cols=261 Identities=18% Similarity=0.310 Sum_probs=224.5
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEE-EEEcC-CCCEEEEEeCCCcEEEEeC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES-CHFSP-DGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~s-l~fSp-dg~~Lasgs~Dg~I~IWd~ 581 (834)
..+.++|.|+++++|.-.+. .+.+...+.+|.+-|.+ ++|-+ ++-.|++|+.|++|.+|..
T Consensus 26 ~~i~s~sRd~t~~vw~~~~~-----------------~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~ 88 (745)
T KOG0301|consen 26 VCIISGSRDGTVKVWAKKGK-----------------QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKL 88 (745)
T ss_pred eEEeecCCCCceeeeeccCc-----------------ccccceecccCcceeeccceeccccCcceEeecccceEEEEec
Confidence 46889999999999954333 33455677888888888 88885 5557999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc
Q 003279 582 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 661 (834)
Q Consensus 582 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 661 (834)
....++.++.+|...|+|+....++. +++||.|.++++|.+.. +...+.+|...|+++.+-|++ .+++|+.|.+
T Consensus 89 ~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKt 162 (745)
T KOG0301|consen 89 SQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN--TYVTGSADKT 162 (745)
T ss_pred CCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh---hhcccCCcchheeeeeecCCC--cEEeccCcce
Confidence 99999999999999999999888877 99999999999998875 345689999999999999986 5669999999
Q ss_pred EEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 003279 662 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs 740 (834)
|++|.- ++++++|.. .+.|..+++-++ ..|++++.||.|++|++ +++++.++.+|.+.|++++...++..+++++
T Consensus 163 IklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g 238 (745)
T KOG0301|consen 163 IKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG 238 (745)
T ss_pred eeeccC--CchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEec
Confidence 999976 677777775 455888888886 56899999999999999 7899999999999999999777777888888
Q ss_pred -CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003279 741 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 797 (834)
Q Consensus 741 -Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~ 797 (834)
|++++||+.. ++...+......|+++.+-++|. |++|++||.|+||.....
T Consensus 239 EDrtlriW~~~-----e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 239 EDRTLRIWKKD-----ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred CCceEEEeecC-----ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 9999999876 67777777778999999999987 899999999999987643
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=225.03 Aligned_cols=285 Identities=15% Similarity=0.219 Sum_probs=218.4
Q ss_pred CcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEE
Q 003279 491 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATG 570 (834)
Q Consensus 491 ~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasg 570 (834)
+-.+++-.++.....+++|++|-+|+.|+-..-... . ..|+.+ .+.-...|.++.|++.|..|++.
T Consensus 167 tk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas----~--------~~fr~l--~P~E~h~i~sl~ys~Tg~~iLvv 232 (641)
T KOG0772|consen 167 TKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS----M--------RSFRQL--QPCETHQINSLQYSVTGDQILVV 232 (641)
T ss_pred ceEEEEeeecCCCceeeeccccceEEEEeccccccc----c--------hhhhcc--CcccccccceeeecCCCCeEEEE
Confidence 344455555666678899999999999955432111 0 112222 23445579999999999999888
Q ss_pred eCCCcEEEEeCCCCeEEEE------------eccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCCCceeeeec---
Q 003279 571 GHDKKAVLWCTESFTVKST------------LEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFT--- 634 (834)
Q Consensus 571 s~Dg~I~IWd~~t~~~~~~------------l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~s~~~~i~~~~--- 634 (834)
+....++|+|-+....... .++|...++|.+|+|+ ...|+|++.||+++|||++..+.-...+.
T Consensus 233 sg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~ 312 (641)
T KOG0772|consen 233 SGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP 312 (641)
T ss_pred ecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence 8888999999665544433 2589999999999996 45799999999999999987654333332
Q ss_pred --cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeE--ee--c--CCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 003279 635 --GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV--FK--C--QSGATQMRFQPRLGRILAAAIENYISIL 706 (834)
Q Consensus 635 --~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~--~~--~--~~~i~~l~~sp~g~~ll~~s~dg~I~iw 706 (834)
+..-.++.++|+++++. ||+|..||.|.+|+..+...... +. | ...|+|+.|+++|++|++-+.|+.+++|
T Consensus 313 ~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvW 391 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVW 391 (641)
T ss_pred CCCcccCceeeecCCCcch-hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeee
Confidence 23457899999999885 77888899999999865432222 22 2 3479999999999999999999999999
Q ss_pred ECCCC-eEEEEEeC--CCCCEEEEEEcCCCCEEEEEe-------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC
Q 003279 707 DVETQ-VCRLKLQG--HKNQVHSVCWNTSGEYLASVS-------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 776 (834)
Q Consensus 707 Dl~t~-~~~~~l~~--h~~~I~sl~~spdg~~Lasgs-------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspd 776 (834)
|++.. +++....+ ...+-+.++|||+.++|++|. .+.+.+||..+. ..+..+......|..|.|+|.
T Consensus 392 DLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---d~v~ki~i~~aSvv~~~Whpk 468 (641)
T KOG0772|consen 392 DLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---DTVYKIDISTASVVRCLWHPK 468 (641)
T ss_pred eccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---eeEEEecCCCceEEEEeecch
Confidence 99975 55555554 233567899999999999986 247999998887 677777777889999999999
Q ss_pred CCEEEEEEcCCeEEEEE
Q 003279 777 FPSLLVIGCYETLELWN 793 (834)
Q Consensus 777 g~~L~sgs~dg~I~Iwd 793 (834)
-+.|++++.||.++||=
T Consensus 469 LNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 469 LNQIFAGSGDGTAHVYY 485 (641)
T ss_pred hhheeeecCCCceEEEE
Confidence 99999999999998873
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=226.03 Aligned_cols=334 Identities=20% Similarity=0.261 Sum_probs=248.2
Q ss_pred CcccCCCceEEeccCCCCeEEeecCCCCCCC-----cccccccccCCCeeeeEE-------EEecCCCCCeEEEEEcCCC
Q 003279 497 NQLTDMDRFVDDGSLDDNVESFLSPDDADPR-----DRVGRSAEVGKGFTFTEF-------QLIPASTSKVESCHFSPDG 564 (834)
Q Consensus 497 ~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~-----~~~~~~~~~~~g~~~~~~-------~~l~gH~~~V~sl~fSpdg 564 (834)
+.....+-+++++|.|..|++|......+.. +......+...-....++ ..+.||++.|.++.|+|.+
T Consensus 200 ~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~ 279 (764)
T KOG1063|consen 200 ARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEG 279 (764)
T ss_pred hccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccch
Confidence 3334457899999999999999333222111 111111110011111122 3456999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCC--eEE-----EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc--eeeeecc
Q 003279 565 KLLATGGHDKKAVLWCTESF--TVK-----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTG 635 (834)
Q Consensus 565 ~~Lasgs~Dg~I~IWd~~t~--~~~-----~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~--~i~~~~~ 635 (834)
..|++++.|+++.||..++. --+ ..+.+.........|+|++..+++-+..|-.++|....... ....+.+
T Consensus 280 ~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSG 359 (764)
T KOG1063|consen 280 LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISG 359 (764)
T ss_pred hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccc
Confidence 99999999999999976543 222 22234455688999999999999999999999999333221 2345679
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCcee-----eEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003279 636 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-----GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 710 (834)
Q Consensus 636 h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i-----~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t 710 (834)
|.+.|.+++|+|.|++++ +.+.|-+-++|-.-..+.. +.-.|...++|+++-+..-.|++|+.+..+++|+...
T Consensus 360 H~~~V~dv~W~psGeflL-svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk 438 (764)
T KOG1063|consen 360 HVDGVKDVDWDPSGEFLL-SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPK 438 (764)
T ss_pred ccccceeeeecCCCCEEE-EeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcH
Confidence 999999999999998555 8888999998865421111 1112456689999988666777888888888886421
Q ss_pred -------------------------------------------CeE---------------------------------E
Q 003279 711 -------------------------------------------QVC---------------------------------R 714 (834)
Q Consensus 711 -------------------------------------------~~~---------------------------------~ 714 (834)
|.. +
T Consensus 439 ~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv 518 (764)
T KOG1063|consen 439 SFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEV 518 (764)
T ss_pred HHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhh
Confidence 000 1
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 003279 715 LKLQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET 788 (834)
Q Consensus 715 ~~l~~h~~~I~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~ 788 (834)
.++.+|...|++++.+|+++++|++. . ..|++|+..+- ..+..+..|.-.|+.++|+||+++|++++.|.+
T Consensus 519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W---~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt 595 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW---LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT 595 (764)
T ss_pred HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch---hhhheecccceEEEEEEECCCCcEEEEeecCce
Confidence 12347888999999999999999987 2 27999999877 566688999999999999999999999999999
Q ss_pred EEEEECCCCeEE-----EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 789 LELWNMTENKTL-----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 789 I~Iwdl~~~~~~-----~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+.+|........ ....|...|+++.|+|++.++||+|.|.+|+||.
T Consensus 596 ~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 596 VSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred EEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 999998654433 3678999999999999999999999999999994
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-23 Score=208.81 Aligned_cols=248 Identities=21% Similarity=0.291 Sum_probs=204.2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---eEEEEeccCCCCeEEEEECC--CCCEEEEEeCCCeEEEEe
Q 003279 548 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD 622 (834)
Q Consensus 548 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~---~~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IWD 622 (834)
-..|.+.|..+...-.|++|||++.|++|+|+.+++. ..+.+|.+|.++|..++|.. -|.+||++++||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 3579999999999989999999999999999998753 56789999999999999976 699999999999999999
Q ss_pred cCCCCce-eeeeccCCCCeEEEEEccCC-CcEEEEEeCCCcEEEEECCCC-c-ee--eEeecCCCeeEEEEecC---C--
Q 003279 623 TENPDYS-LRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNG-S-CA--GVFKCQSGATQMRFQPR---L-- 691 (834)
Q Consensus 623 l~s~~~~-i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~lwDl~s~-~-~i--~~~~~~~~i~~l~~sp~---g-- 691 (834)
-..+... ...+..|...|++++|.|.+ ..+|++++.||.|.|.+.+.. . .. ..+.|.-++++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 9887542 34567899999999999965 456778899999999998764 1 11 12235677999999985 4
Q ss_pred ---------CEEEEEEcCCeEEEEECCCC--eEEEEEeCCCCCEEEEEEcCCC----CEEEEEe-CCeEEEEEcCCCCCc
Q 003279 692 ---------GRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRVWSIGSGSKG 755 (834)
Q Consensus 692 ---------~~ll~~s~dg~I~iwDl~t~--~~~~~l~~h~~~I~sl~~spdg----~~Lasgs-Dg~I~IwDl~s~~~~ 755 (834)
+.|++|+.|+.|+||+..++ +...++.+|.+.|+.++|.|.- .+|++++ ||+|.||..+.....
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 56999999999999999875 3445688999999999999964 5789999 999999988743222
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 756 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 756 ~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
-....+......+..+.|+..|+.|++++.|+.|.+|.-.
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 2333344456789999999999999999999999999643
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-23 Score=226.77 Aligned_cols=290 Identities=17% Similarity=0.222 Sum_probs=233.3
Q ss_pred CeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCC--EEEEEeCCC
Q 003279 539 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADR 616 (834)
Q Consensus 539 g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~--~Latgs~Dg 616 (834)
.+...+...++||++.|.||+..|.|.+||+|+.||+|+||.+.+++++.++. ..+.|.||+|+|.+. .||++- +.
T Consensus 387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~ 464 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GE 464 (733)
T ss_pred CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cC
Confidence 35556677889999999999999999999999999999999999999999885 456899999999754 344433 33
Q ss_pred eEEEEecCCC------------------------------------CceeeeeccCCCCeEEEEEccCCCcEEEEEeCC-
Q 003279 617 TVRVWDTENP------------------------------------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN- 659 (834)
Q Consensus 617 ~I~IWDl~s~------------------------------------~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D- 659 (834)
.+.|.+..-+ ..-++....|...|..+.|+..|+++..++..+
T Consensus 465 ~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence 3444432211 011234455888999999999999776655433
Q ss_pred -CcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEE
Q 003279 660 -SEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 737 (834)
Q Consensus 660 -g~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~La 737 (834)
..|.|+++.......-|. ..+.+.++.|+|...+|++++ ...|+|||+...+.+..+.....+|.+++++|.|..|+
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli 623 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLI 623 (733)
T ss_pred cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEE
Confidence 478999998877766664 457799999999988777766 47899999999888887777788999999999999999
Q ss_pred EEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC-------CCCeEE---EeccCC
Q 003279 738 SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM-------TENKTL---TLSAHD 806 (834)
Q Consensus 738 sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl-------~~~~~~---~l~~h~ 806 (834)
+++ |+.+..||+.-.. ++...+..|...+++++||+..+.+++++.|+++.||.- .+..++ .+.+|.
T Consensus 624 ~gs~d~k~~WfDldlss--kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~ 701 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLSS--KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE 701 (733)
T ss_pred EecCCCeeEEEEcccCc--chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce
Confidence 999 9999999998664 577788889999999999999999999999998888742 122222 566786
Q ss_pred CC----eEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 807 KL----VSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 807 ~~----V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
.. |.++.|+|.-.+|++++.||+|++|
T Consensus 702 ~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 702 KTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eecccceEeecccCCCceEEecCCCceEEee
Confidence 65 9999999999999999999999999
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-24 Score=221.15 Aligned_cols=266 Identities=16% Similarity=0.245 Sum_probs=224.5
Q ss_pred eEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 003279 505 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 584 (834)
Q Consensus 505 ~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~ 584 (834)
.+++|+.|+.|++|+.... .++.++.+|.+.|..|+++. ..+++++.|++|+.|.++.
T Consensus 81 ~~aSGs~DG~VkiWnlsqR-------------------~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~- 138 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQR-------------------ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG- 138 (433)
T ss_pred hhhccccCceEEEEehhhh-------------------hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-
Confidence 4689999999999966443 34678899999999999987 5788999999999998776
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEE
Q 003279 585 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 664 (834)
Q Consensus 585 ~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~l 664 (834)
.++.++.+ ...+..|.-+..+..++||+.+ |.|||..... ++..+.-..+.|.++.|+|....+|++|+.|+.|.+
T Consensus 139 ~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~-Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvL 214 (433)
T KOG0268|consen 139 PPLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDN-PVSSMSWGADSISSVKFNPVETSILASCASDRSIVL 214 (433)
T ss_pred Ccceeeec-cccccccccccccccccccCce--eeecccccCC-ccceeecCCCceeEEecCCCcchheeeeccCCceEE
Confidence 46666643 3457777777777889998765 9999998643 577777778899999999999999999999999999
Q ss_pred EECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CC
Q 003279 665 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE 742 (834)
Q Consensus 665 wDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg 742 (834)
||++.+.++..+...-..+.++|+|..-.|+++.+|..++.||++.. .++..+.+|.+.|.++.|+|.|.-+++|+ |.
T Consensus 215 yD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk 294 (433)
T KOG0268|consen 215 YDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK 294 (433)
T ss_pred EecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccc
Confidence 99999999999888888999999998778888999999999999975 67778889999999999999999999999 99
Q ss_pred eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 003279 743 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 798 (834)
Q Consensus 743 ~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~ 798 (834)
+|+||.++.+......++- .-..|.++.|+-|..+|++|+.|+.|++|.....+
T Consensus 295 sIRIf~~~~~~SRdiYhtk--RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 295 SIRIFPVNHGHSRDIYHTK--RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred eEEEeecCCCcchhhhhHh--hhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 9999999877432222211 23468999999999999999999999999875543
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-22 Score=204.89 Aligned_cols=247 Identities=19% Similarity=0.273 Sum_probs=203.6
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEe-CCCcE
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEI 662 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs-~Dg~I 662 (834)
.+..+.+......|+++.|+++|.++++++.|.+|+|||..+++. ++++..+...|..++|......++.+.. .|.+|
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-VKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-eeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 345556666788999999999999999999999999999998775 7777778788889999776565554332 38899
Q ss_pred EEEECCCCceeeEeecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-
Q 003279 663 RYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 740 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~~~-~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs- 740 (834)
++.++.+.+.++.|..+ ..|..++.+|-+..+++++.|++|++||++..++...+.... -..++|+|.|-++|++.
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPEGLIFALANG 160 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCCCcEEEEecC
Confidence 99999999999999864 569999999999999999999999999999888776665333 34579999999999998
Q ss_pred CCeEEEEEcCCCCCceeEEEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCC---eEEEE
Q 003279 741 DELVRVWSIGSGSKGECIHELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKL---VSSLA 813 (834)
Q Consensus 741 Dg~I~IwDl~s~~~~~~i~~~~---~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~---V~~la 813 (834)
.+.|++||+++-.. .+...+. ......+.+.|+|+|++|+.++..+.+++.|.-+|.+. .+..+... -...+
T Consensus 161 ~~~IkLyD~Rs~dk-gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 161 SELIKLYDLRSFDK-GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred CCeEEEEEecccCC-CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence 44999999998643 2333333 34678899999999999999999999999999999877 44444332 25778
Q ss_pred EeCCCCEEEEEecCCcEEEeC
Q 003279 814 ASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 814 fspdg~~LaSgs~DG~I~IWd 834 (834)
|+||+++|++|+.||+|.+|+
T Consensus 240 ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 240 FTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred ECCCCcEEEEecCCCcEEEEE
Confidence 999999999999999999996
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=215.40 Aligned_cols=270 Identities=17% Similarity=0.205 Sum_probs=228.8
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
.++.+|+.|.++.+|+-... ..+.+|+||...|+.+.|+++...+++++.|..|+||....
T Consensus 232 ~~ilTGG~d~~av~~d~~s~-------------------q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~ 292 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSN-------------------QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL 292 (506)
T ss_pred CcceecCCCCceEEEecchh-------------------hhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc
Confidence 67789999989888844322 34678899999999999999999999999999999999988
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeec-cCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEI 662 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~-~h~~~V~sl~fspdg~~llasgs~Dg~I 662 (834)
......+..|.++|+.+..+|.|.||++++.|++..+.|+.++........ ...-.+++++|+|||- +|.+|..|+.|
T Consensus 293 ~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~v 371 (506)
T KOG0289|consen 293 SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGVV 371 (506)
T ss_pred ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCCCceE
Confidence 888888889999999999999999999999999999999998775332222 2334589999999975 88899999999
Q ss_pred EEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEEEe
Q 003279 663 RYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h-~~~I~sl~~spdg~~Lasgs 740 (834)
+|||+.+...+..|.. .++|..+.|+.+|-++++++.|+.|++||++..+...++.-. ...|.+++|+..|.+|+.++
T Consensus 372 kiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 372 KIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG 451 (506)
T ss_pred EEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec
Confidence 9999999988888875 567999999999999999999999999999998777766542 33799999999999999986
Q ss_pred -CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 741 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 741 -Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
|=.|++++-.+. ...++..+..|.+..+.+.|.....++++++.|..++++.+
T Consensus 452 ~~l~Vy~~~k~~k-~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 452 SDLQVYICKKKTK-SWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeEEEEEecccc-cceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 546666664442 34677778888888999999999999999999999888764
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=224.80 Aligned_cols=244 Identities=21% Similarity=0.349 Sum_probs=213.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECC---CCCEEEEEeCCCeEEEEecCCC
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP---SLSRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fsp---dg~~Latgs~Dg~I~IWDl~s~ 626 (834)
+....|.|++.+|+|.+||+|..-|+++||++.+.+....++.|...|.|+.|+. ..++||+++.|.-|+|||+...
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN 536 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence 4456799999999999999999999999999999999999999999999999986 3678999999999999999877
Q ss_pred CceeeeeccCCCCeEEEEEccCC-CcEEEEEeCCCcEEEEECCCCceeeEee------cCCCeeEEEEecCCCEEEEEEc
Q 003279 627 DYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQPRLGRILAAAI 699 (834)
Q Consensus 627 ~~~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~lwDl~s~~~i~~~~------~~~~i~~l~~sp~g~~ll~~s~ 699 (834)
-..+.++.+|...|+++.|.-.| +.-+++|+.|+.|.+--.........|. .+..++.+++.|..+++++++.
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ 616 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ 616 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence 66788999999999999998765 3456689999887654433221112221 1455889999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEeC---CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003279 700 ENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 775 (834)
Q Consensus 700 dg~I~iwDl~t~~~~~~l~~---h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp 775 (834)
|..|+|||+.+++.++.|++ |.+....+..+|.|.||++.. |.++.+||+.++ +|+....+|...|+.+.|.+
T Consensus 617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---EcvA~m~GHsE~VTG~kF~n 693 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---ECVAQMTGHSEAVTGVKFLN 693 (1080)
T ss_pred ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---hhhhhhcCcchheeeeeecc
Confidence 99999999999999999986 667788899999999999877 999999999999 89999999999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCC
Q 003279 776 TFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 776 dg~~L~sgs~dg~I~Iwdl~~ 796 (834)
|.++|++++.||+|.||.+..
T Consensus 694 DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 694 DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cchhheeecCCceEEEEECch
Confidence 999999999999999999864
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-23 Score=231.34 Aligned_cols=275 Identities=19% Similarity=0.361 Sum_probs=217.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----eEEEEecc---CCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCC
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEE---HTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN 625 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~----~~~~~l~~---h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s 625 (834)
.+.+|...++-.-|++++. ..+.||.+... ++...++. -...+.+|.|.. +.++|||++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 3556777788888888875 46777766532 22222211 112456788875 467999999999999999986
Q ss_pred --CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecC-CCEEEEEEcCC
Q 003279 626 --PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPR-LGRILAAAIEN 701 (834)
Q Consensus 626 --~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~-g~~ll~~s~dg 701 (834)
....+..|..|...|.+++|++...++|++|+.||.|++||++..+...++.. ...|..+.|+|. +.+|+++...|
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence 23345678899999999999999999999999999999999999888887776 445999999995 56677777789
Q ss_pred eEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003279 702 YISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 779 (834)
Q Consensus 702 ~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~ 779 (834)
.+.+||++.. ++...+..|.++|.|+.|+|++.+||+|+ |+.|+|||+.+... ..++++. ...++.++.|-|...+
T Consensus 200 ~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-~~~~tIn-Tiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 200 YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-KPKHTIN-TIAPVGRVKWRPARSY 277 (839)
T ss_pred eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-cceeEEe-ecceeeeeeeccCccc
Confidence 9999999976 67788889999999999999999999999 99999999987643 3333333 3678999999999876
Q ss_pred EEEEEc---CCeEEEEECCCCeEE--EeccCCCCeEEEEEeC-CCCEEEEEecCCcEE
Q 003279 780 LLVIGC---YETLELWNMTENKTL--TLSAHDKLVSSLAAST-VNGMVASASHDKCVK 831 (834)
Q Consensus 780 L~sgs~---dg~I~Iwdl~~~~~~--~l~~h~~~V~~lafsp-dg~~LaSgs~DG~I~ 831 (834)
.++.+. |-.|+|||++..-+- .+..|...++.++|.. |...|.+++.||+|.
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 554433 559999999876443 7789999999999976 345788999999864
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-22 Score=214.74 Aligned_cols=253 Identities=19% Similarity=0.335 Sum_probs=205.6
Q ss_pred EEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC----------eEEEEeccCCCCeEEEEECCC-CCEEEE
Q 003279 544 EFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESF----------TVKSTLEEHTQWITDVRFSPS-LSRLAT 611 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~IWd~~t~----------~~~~~l~~h~~~I~~l~fspd-g~~Lat 611 (834)
++...-.|.+.|+.+.+-|.. .+||+++..+.|.|||..+. .+-.++.+|.+.-++++|++. .-.|++
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls 195 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS 195 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEee
Confidence 344445799999999999954 57778888999999997642 222378899998889999985 457999
Q ss_pred EeCCCeEEEEecCCCCc------eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC--CceeeEee-cCCCe
Q 003279 612 SSADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--GSCAGVFK-CQSGA 682 (834)
Q Consensus 612 gs~Dg~I~IWDl~s~~~------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s--~~~i~~~~-~~~~i 682 (834)
++.|++|++||+..... +...+.+|...|..++|++....+|++++.|+.+.|||+++ .++..... +..++
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v 275 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV 275 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence 99999999999975432 35678899999999999999999999999999999999995 44444443 46789
Q ss_pred eEEEEecCCCE-EEEEEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCC-----
Q 003279 683 TQMRFQPRLGR-ILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGS----- 753 (834)
Q Consensus 683 ~~l~~sp~g~~-ll~~s~dg~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~----- 753 (834)
.|++|+|-+.+ |++++.|++|.+||+++. .++.++.+|...|.+|.|+|... .|++++ |+.+.|||+..-.
T Consensus 276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ 355 (422)
T KOG0264|consen 276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP 355 (422)
T ss_pred eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence 99999996554 566677999999999986 67889999999999999999765 555555 9999999997532
Q ss_pred ------CceeEEEeecCCCceEEEEEeCCCCEE-EEEEcCCeEEEEECCC
Q 003279 754 ------KGECIHELSCTGNKFHSCVFHPTFPSL-LVIGCYETLELWNMTE 796 (834)
Q Consensus 754 ------~~~~i~~~~~~~~~I~svafspdg~~L-~sgs~dg~I~Iwdl~~ 796 (834)
..+.+....+|...|..+.|+|..+.+ ++++.|+.+.||.+..
T Consensus 356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 234567778899999999999999865 5667788999999864
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=223.19 Aligned_cols=276 Identities=14% Similarity=0.228 Sum_probs=220.1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC
Q 003279 549 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 627 (834)
Q Consensus 549 ~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~-~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~ 627 (834)
.+|+...+.|+|.|+|++|++++.||.|++|+.... +...++..+...|.+++.. +.+|++|+.+++|.+|.+.++.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 378999999999999999999999999999987665 4444555588888888875 4599999999999999998866
Q ss_pred ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 003279 628 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISIL 706 (834)
Q Consensus 628 ~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iw 706 (834)
. -..+...+-++.+++|+-+|. +++.|+.|-.|++.++.+......+. +..+|.++.|+|.+.+|++.+.||.|++|
T Consensus 88 ~-~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 88 E-DTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred c-cceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 4 345555678899999999877 66688889999999999887777766 46789999999999999999999999999
Q ss_pred ECCCCeEEEEEeCC--------CCCEEEEEEcCCC-CEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003279 707 DVETQVCRLKLQGH--------KNQVHSVCWNTSG-EYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 777 (834)
Q Consensus 707 Dl~t~~~~~~l~~h--------~~~I~sl~~spdg-~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg 777 (834)
|+.++.+...+.+- ...+..++|+|+| .+++.+.|+.|++|+..+.+....+. ...+...+..+.|+|.|
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr-~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR-DKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec-ccccccceEEEEEcCCC
Confidence 99998877666531 3456778999995 45555559999999998874322222 22234449999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 778 PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 778 ~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
.||++++.+|.|.|||+++-+. ......|++++|.|+...|-.-..-|...+
T Consensus 245 ~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGV 296 (933)
T ss_pred cEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeecccccc
Confidence 9999999999999999998322 334568999999999886655444444433
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=201.48 Aligned_cols=243 Identities=23% Similarity=0.396 Sum_probs=201.2
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC--ceeeeeccCCCCeEEEEEc-cCCCcEEEEEeCCCcEEEEEC
Q 003279 591 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSI 667 (834)
Q Consensus 591 ~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~--~~i~~~~~h~~~V~sl~fs-pdg~~llasgs~Dg~I~lwDl 667 (834)
..|.+.|.++.....|+.||||+.|++|+|+.+++.. ..+..+.+|.++|..++|. |.-..+|++|+.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 5799999999988889999999999999999998765 5678999999999999995 555669999999999999999
Q ss_pred CCCceeeEee---cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCC---eEEEEEeCCCCCEEEEEEcCC---C---
Q 003279 668 NNGSCAGVFK---CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTS---G--- 733 (834)
Q Consensus 668 ~s~~~i~~~~---~~~~i~~l~~sp~--g~~ll~~s~dg~I~iwDl~t~---~~~~~l~~h~~~I~sl~~spd---g--- 733 (834)
.++.-..... +...+++++|.|. |-.|++++.||.|.|++.+.. ........|.-.|++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 9885444333 3667999999885 456888999999999988754 333445569999999999985 4
Q ss_pred --------CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCCC---
Q 003279 734 --------EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTEN--- 797 (834)
Q Consensus 734 --------~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg----~~L~sgs~dg~I~Iwdl~~~--- 797 (834)
+.|++++ |..|+||+..++ ....-..+..|...|..++|.|.- .+|++++.||+|.||.....
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 4688888 999999999886 223444588999999999999975 46999999999999976532
Q ss_pred -eEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 798 -KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 798 -~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+...+......+..+.||..|.+|+.++.|+.|.+|+
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 2224445678899999999999999999999999995
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=197.93 Aligned_cols=283 Identities=20% Similarity=0.333 Sum_probs=219.6
Q ss_pred EecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCe----------EEEE-----eccCCCCeEEEEECC-CCCEE
Q 003279 547 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT----------VKST-----LEEHTQWITDVRFSP-SLSRL 609 (834)
Q Consensus 547 ~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~IWd~~t~~----------~~~~-----l~~h~~~I~~l~fsp-dg~~L 609 (834)
..+.|.+.|+++.+.+ .|+|+++|+.||.|.|||++... .+.. -.+|...|.++.|.| |...+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3457899999999988 78999999999999999987532 1111 136888999999999 66788
Q ss_pred EEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCC--CcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEE
Q 003279 610 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK--EDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMR 686 (834)
Q Consensus 610 atgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg--~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~ 686 (834)
.+++.|.+++|||.++-.. ...|. ..+.|++-+++|-. ..++++|..|-.|++.|+.+|.+...+.. ..+|.++.
T Consensus 118 tssSFDhtlKVWDtnTlQ~-a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQE-AVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred ecccccceEEEeeccccee-eEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence 9999999999999998654 33333 56778888888743 56888888899999999999999998875 56799999
Q ss_pred EecCCCEE-EEEEcCCeEEEEECCCC-eEEEEE--------------eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEc
Q 003279 687 FQPRLGRI-LAAAIENYISILDVETQ-VCRLKL--------------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 749 (834)
Q Consensus 687 ~sp~g~~l-l~~s~dg~I~iwDl~t~-~~~~~l--------------~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl 749 (834)
|+|...++ ++|+.||.|++||++.- -+...+ ..|.+.|.+++|+.++.++++++ |..+++|+.
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 99988775 56677999999999864 333332 24778899999999999999988 999999999
Q ss_pred CCCCCceeEEEeecCCC----ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEE
Q 003279 750 GSGSKGECIHELSCTGN----KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 824 (834)
Q Consensus 750 ~s~~~~~~i~~~~~~~~----~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSg 824 (834)
.+++....-..-..+.. .+. +. +-+...++..-.++.+.++++-++..+ .+..|...|.|.++-|+-..+.++
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred ccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 98854221111111111 111 22 334444555555689999999988877 677898999999999999999999
Q ss_pred ecCCcEEEe
Q 003279 825 SHDKCVKIW 833 (834)
Q Consensus 825 s~DG~I~IW 833 (834)
..|+.|..|
T Consensus 354 ~~d~ni~~w 362 (397)
T KOG4283|consen 354 DMNGNIYMW 362 (397)
T ss_pred ccCCccccc
Confidence 999999888
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-22 Score=214.18 Aligned_cols=228 Identities=23% Similarity=0.290 Sum_probs=201.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC------
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN------ 625 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s------ 625 (834)
.++|.|++-+|+|.+|+.|+..|.|++|.+.+|+.+..+..|-..|+|+.|+.|+.+|+|||.||.|.+|.+..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 46799999999999999998999999999999999999999999999999999999999999999999998742
Q ss_pred --CCceeeeeccCCCCeEEEEEccCC-CcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCe
Q 003279 626 --PDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 702 (834)
Q Consensus 626 --~~~~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~ 702 (834)
...++..+..|.-+|+++...+.+ ...+++++.|.+|++||+..+..+..+..+..+.+++++|.+..+++|+.+|.
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGK 240 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcce
Confidence 224578899999999999887652 44677999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCC----------------eEEEEEeCCCC--CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003279 703 ISILDVETQ----------------VCRLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 763 (834)
Q Consensus 703 I~iwDl~t~----------------~~~~~l~~h~~--~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 763 (834)
|.+.++... ..+..+.+|.+ .|+|++++-||.+|++|+ ||.|.|||+.+. .+++++..
T Consensus 241 I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~---Q~iRtl~~ 317 (476)
T KOG0646|consen 241 IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK---QCIRTLQT 317 (476)
T ss_pred EEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH---HHHHHHhh
Confidence 999887532 34556778888 999999999999999999 999999999987 77777776
Q ss_pred CCCceEEEEEeCCCCEEEE
Q 003279 764 TGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 764 ~~~~I~svafspdg~~L~s 782 (834)
..++|+.+.+.|-.+-++.
T Consensus 318 ~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 318 SKGPVTNLQINPLERGIIL 336 (476)
T ss_pred hccccceeEeeccccceec
Confidence 7888999988776544444
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-22 Score=219.27 Aligned_cols=275 Identities=22% Similarity=0.320 Sum_probs=210.7
Q ss_pred EEEcC---CCCEEEEEeCCCcEEEEeCCCCeEE------EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc
Q 003279 558 CHFSP---DGKLLATGGHDKKAVLWCTESFTVK------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 628 (834)
Q Consensus 558 l~fSp---dg~~Lasgs~Dg~I~IWd~~t~~~~------~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~ 628 (834)
+.|++ ...+||.+.+||.|.++|....... .....|...|.++.|-|....|++++.|.++++||+...+.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 66665 3457999999999999998754333 44567999999999999778899999999999999998664
Q ss_pred eee--eeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCcee--------------------eEe--------ec
Q 003279 629 SLR--TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--------------------GVF--------KC 678 (834)
Q Consensus 629 ~i~--~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i--------------------~~~--------~~ 678 (834)
+. .+.+|.+.|.++||.|.+..+|++|+.||.|.|||++....- ... ..
T Consensus 135 -~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 135 -VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred -ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 43 488999999999999999999999999999999998753300 000 00
Q ss_pred CCCeeE---EEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEE--------eCC---CCCEEEEEEcCCCCEEEEEe-CC
Q 003279 679 QSGATQ---MRFQPRLGRILAAAI-ENYISILDVETQVCRLKL--------QGH---KNQVHSVCWNTSGEYLASVS-DE 742 (834)
Q Consensus 679 ~~~i~~---l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l--------~~h---~~~I~sl~~spdg~~Lasgs-Dg 742 (834)
...|.+ +.+..|...|++++. |+.|+|||+++....... ..| ...+.++..+..|.+|++.. |+
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~ 293 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN 293 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence 122333 556677788888887 999999999986544332 123 23577888888888776655 99
Q ss_pred eEEEEEcCCCCCceeEEEeecCCC--ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--EeccCCCCeEEEEEeCCC
Q 003279 743 LVRVWSIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVN 818 (834)
Q Consensus 743 ~I~IwDl~s~~~~~~i~~~~~~~~--~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~--~l~~h~~~V~~lafspdg 818 (834)
.|++|++.+... .++..+.++.. ....-..+|++.+|++++.|...++|.+.+.+.- .+.+|.-.|++++|.|..
T Consensus 294 sIy~ynm~s~s~-sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~ 372 (720)
T KOG0321|consen 294 SIYFYNMRSLSI-SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA 372 (720)
T ss_pred cEEEEeccccCc-CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence 999999987643 33444443322 2233467999999999999999999999886543 677999999999999854
Q ss_pred -CEEEEEecCCcEEEeC
Q 003279 819 -GMVASASHDKCVKIWK 834 (834)
Q Consensus 819 -~~LaSgs~DG~I~IWd 834 (834)
.-+|+|++|-.++||+
T Consensus 373 ~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 373 TTPVATCSDDFRVKIWR 389 (720)
T ss_pred CCCceeeccCcceEEEe
Confidence 3577889999999996
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.3e-22 Score=211.09 Aligned_cols=241 Identities=20% Similarity=0.325 Sum_probs=198.0
Q ss_pred cCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCCCc---------eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc
Q 003279 592 EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY---------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 661 (834)
Q Consensus 592 ~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~s~~~---------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 661 (834)
.|.+.|+.+++-|. ..++++.+..+.|+|||..+-.. +-..+.+|...-++++|++.....+++++.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 59999999999995 56777888899999999875321 123678899888999999998888999999999
Q ss_pred EEEEECCCCce-------eeEee-cCCCeeEEEEecCC-CEEEEEEcCCeEEEEECC--CCeEEEEEeCCCCCEEEEEEc
Q 003279 662 IRYWSINNGSC-------AGVFK-CQSGATQMRFQPRL-GRILAAAIENYISILDVE--TQVCRLKLQGHKNQVHSVCWN 730 (834)
Q Consensus 662 I~lwDl~s~~~-------i~~~~-~~~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~--t~~~~~~l~~h~~~I~sl~~s 730 (834)
|++||+..... ...+. +...|..++|++-. ..|.+++.|+.+.|||++ +.++.....+|...|.|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 99999975432 22333 35668999999954 456677788999999999 556777788899999999999
Q ss_pred CC-CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCC-e--------
Q 003279 731 TS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTEN-K-------- 798 (834)
Q Consensus 731 pd-g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg-~~L~sgs~dg~I~Iwdl~~~-~-------- 798 (834)
|- +.+||+++ |++|.+||+++-. .+++.+..|...|..+.|+|.. ..|++++.|+.+.|||+..- +
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~--~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~ 359 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLN--KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE 359 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcc--cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhc
Confidence 95 45677777 9999999999875 5899999999999999999976 45677888999999999541 1
Q ss_pred ------EEEeccCCCCeEEEEEeCCCC-EEEEEecCCcEEEeC
Q 003279 799 ------TLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 834 (834)
Q Consensus 799 ------~~~l~~h~~~V~~lafspdg~-~LaSgs~DG~I~IWd 834 (834)
.+.-.+|...|..+.|+|... .|++++.|+.+.||+
T Consensus 360 dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 360 DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred cCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 124558999999999999887 677899999999996
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=202.95 Aligned_cols=302 Identities=18% Similarity=0.273 Sum_probs=230.3
Q ss_pred EEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 003279 506 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 585 (834)
Q Consensus 506 l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~ 585 (834)
+.+|..++++.+|.. +.. ...+...+|.+.|.+++.-.+|.+|- |+.|..|..||-. .+
T Consensus 260 viTgDS~G~i~Iw~~------------------~~~-~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~-y~ 318 (626)
T KOG2106|consen 260 VITGDSGGNILIWSK------------------GTN-RISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDN-YR 318 (626)
T ss_pred EEeecCCceEEEEeC------------------CCc-eEEeEeeecCCceEEEEEecCccEee-cCccceEEecccc-cc
Confidence 467777788888833 111 11223339999999999999996655 9999999999821 11
Q ss_pred EE-----------------------------------------EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC
Q 003279 586 VK-----------------------------------------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 586 ~~-----------------------------------------~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 624 (834)
.+ ....+|.+....++.+|+...++|++.|+.+++|+
T Consensus 319 k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-- 396 (626)
T KOG2106|consen 319 KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-- 396 (626)
T ss_pred ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--
Confidence 00 01136888889999999999999999999999999
Q ss_pred CCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003279 625 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 704 (834)
Q Consensus 625 s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~ 704 (834)
..+.... .....++.|++|+|.| .++.|...|...+.|+++...+........+.+++|+|+|.+|++++.|+.|+
T Consensus 397 ~~k~~wt--~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iy 472 (626)
T KOG2106|consen 397 DHKLEWT--KIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIY 472 (626)
T ss_pred CCceeEE--EEecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEE
Confidence 2232222 2345789999999998 77789999999999999988877777788899999999999999999999999
Q ss_pred EEECCCC-eEEEEE-eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEE-----------e----ecCCC
Q 003279 705 ILDVETQ-VCRLKL-QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE-----------L----SCTGN 766 (834)
Q Consensus 705 iwDl~t~-~~~~~l-~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~-----------~----~~~~~ 766 (834)
||-+... ...... +.+..+|+.+.|++|+++|.+-+ |-.|..|.-........+.. | ..+..
T Consensus 473 iy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t 552 (626)
T KOG2106|consen 473 IYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGT 552 (626)
T ss_pred EEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCc
Confidence 9998754 222222 22458999999999999999988 88999994433221111111 1 12344
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE----EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 767 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 767 ~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~----~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.|..++-+.+.+.++++...|+|++|...-..+. ...+|.+.|++++|.-+...|++.+.|..|..|+
T Consensus 553 ~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 553 DINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWR 624 (626)
T ss_pred hHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEE
Confidence 5666777778888999999999999987544333 6779999999999999888888888999999996
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-21 Score=195.70 Aligned_cols=257 Identities=20% Similarity=0.321 Sum_probs=199.1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC----CCeEEEEeccCCCCeEEEEECC--CCCEEEEEeCCCeEEEEe
Q 003279 549 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD 622 (834)
Q Consensus 549 ~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~----t~~~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IWD 622 (834)
.+|.+-|.|+.|.+.|+.+|+|+.|.+|+|||.. +..+....+.|.+.|..|.|.+ -|..+|+++.|++|.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4799999999999999999999999999999954 3566677889999999999976 489999999999999997
Q ss_pred cCCCC--------ceeeeeccCCCCeEEEEEccCC-CcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCE
Q 003279 623 TENPD--------YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 693 (834)
Q Consensus 623 l~s~~--------~~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ 693 (834)
-.... ....++....+.|++|.|.|.. ...+++++.||.|+||+.-.--.+.......++..+.. |
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~-p---- 164 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID-P---- 164 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC-C----
Confidence 63111 1235666778899999999864 34678899999999998765433322222111111110 1
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCC---CCEEEEEeCC------eEEEEEcCCCC-CceeEEEeec
Q 003279 694 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS---GEYLASVSDE------LVRVWSIGSGS-KGECIHELSC 763 (834)
Q Consensus 694 ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spd---g~~LasgsDg------~I~IwDl~s~~-~~~~i~~~~~ 763 (834)
...+..+..|+.|+|. ..+|++|+|. .++||...... +...+.++..
T Consensus 165 -----------------------p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 165 -----------------------PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred -----------------------cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 1125556778888874 4578888865 89999887654 4567778889
Q ss_pred CCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCCCe--------------------EE-EeccCCCCeEEEEEeCCC
Q 003279 764 TGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTENK--------------------TL-TLSAHDKLVSSLAASTVN 818 (834)
Q Consensus 764 ~~~~I~svafspdg----~~L~sgs~dg~I~Iwdl~~~~--------------------~~-~l~~h~~~V~~lafspdg 818 (834)
+..+|+.++|.|+- ..|++++.|| |+||.++... .+ .+..|.+.|+.+.|.-.|
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence 99999999999963 5688999999 9999987311 11 466899999999999999
Q ss_pred CEEEEEecCCcEEEeC
Q 003279 819 GMVASASHDKCVKIWK 834 (834)
Q Consensus 819 ~~LaSgs~DG~I~IWd 834 (834)
.+|++.++||+|++|+
T Consensus 301 tiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 301 TILSSTGDDGCVRLWK 316 (361)
T ss_pred eEEeecCCCceeeehh
Confidence 9999999999999996
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.1e-20 Score=196.49 Aligned_cols=289 Identities=12% Similarity=0.151 Sum_probs=231.0
Q ss_pred ccccCCCeeeeEEEEecCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEE
Q 003279 533 SAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 611 (834)
Q Consensus 533 ~~~~~~g~~~~~~~~l~gH~-~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Lat 611 (834)
.|....+..++....++.++ .-|.|++|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++...+|.+|-
T Consensus 226 Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS- 303 (626)
T KOG2106|consen 226 FWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS- 303 (626)
T ss_pred EEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-
Confidence 34455555556666676654 5699999999995 67999999999999988888877779999999999999987655
Q ss_pred EeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCC
Q 003279 612 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL 691 (834)
Q Consensus 612 gs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g 691 (834)
|+.|..|..||-.-.+.....+....+.|..++-. +.. |+.|...+.|..=.++++-.+..+.+......++.+|+.
T Consensus 304 GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~--~~d-i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~ 380 (626)
T KOG2106|consen 304 GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEG--KGD-ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK 380 (626)
T ss_pred cCccceEEeccccccccccccCchhcCCeeEEecC--CCc-EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh
Confidence 99999999999443232233444556778777643 333 446777778888888888888888888899999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEE
Q 003279 692 GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS 770 (834)
Q Consensus 692 ~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~s 770 (834)
+.+++++.|+.+++|+ ..+.+.+.. ...++.|+.|+|.| .++.|. .|...|.|.++. ..+..... ..++++
T Consensus 381 ~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~---~lv~~~~d-~~~ls~ 452 (626)
T KOG2106|consen 381 NQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ---DLVTIHTD-NEQLSV 452 (626)
T ss_pred hheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccc---eeEEEEec-CCceEE
Confidence 9999999999999999 444444443 45788999999999 888888 999999999885 44444444 889999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCeEE--Ee-ccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 771 CVFHPTFPSLLVIGCYETLELWNMTENKTL--TL-SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 771 vafspdg~~L~sgs~dg~I~Iwdl~~~~~~--~l-~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+.|+|+|.+|++++.|+.|+||-+..+... .. ..|..+|+.+.|++|+++|.+-+-|-.|-.|+
T Consensus 453 v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 453 VRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 999999999999999999999988654332 22 24458999999999999999999999999994
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-20 Score=209.68 Aligned_cols=276 Identities=19% Similarity=0.298 Sum_probs=223.2
Q ss_pred CCeEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee
Q 003279 553 SKVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 630 (834)
Q Consensus 553 ~~V~sl~fSpd--g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i 630 (834)
+.|+++. +|. =+.|+.|+.+|.+.||++.+++.+.++.++...|+++.=+|--..++.|..+|+|.|+++..++. +
T Consensus 160 ~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki-l 237 (910)
T KOG1539|consen 160 DFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI-L 237 (910)
T ss_pred CceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcE-E
Confidence 3377763 553 24588999999999999999999999999999999999999888999999999999999998764 6
Q ss_pred eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee--cCCCeeEEEEecCCCEEEEEEcCCeEEEE--
Q 003279 631 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISIL-- 706 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~--~~~~i~~l~~sp~g~~ll~~s~dg~I~iw-- 706 (834)
.++...-+.|+.++|..||..++++++..|.+.+||++..+.+.... +.+.+....|.+....+++++.|+.+++|
T Consensus 238 ~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vf 317 (910)
T KOG1539|consen 238 MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVF 317 (910)
T ss_pred EEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEe
Confidence 77764469999999999999999999999999999999888777665 23566777777766667776666655444
Q ss_pred ECCCC---------------------------------------------------------------------------
Q 003279 707 DVETQ--------------------------------------------------------------------------- 711 (834)
Q Consensus 707 Dl~t~--------------------------------------------------------------------------- 711 (834)
|...+
T Consensus 318 D~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~ 397 (910)
T KOG1539|consen 318 DSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP 397 (910)
T ss_pred eCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence 31111
Q ss_pred -----------------------------------eE-EEEEeCCC------CCEEEEEEcCCCCEEEEEe-CCeEEEEE
Q 003279 712 -----------------------------------VC-RLKLQGHK------NQVHSVCWNTSGEYLASVS-DELVRVWS 748 (834)
Q Consensus 712 -----------------------------------~~-~~~l~~h~------~~I~sl~~spdg~~Lasgs-Dg~I~IwD 748 (834)
.. .+.+ .+. ..+++++.+++|++.+.|. .|.|-+|+
T Consensus 398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L-~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN 476 (910)
T KOG1539|consen 398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVL-DPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN 476 (910)
T ss_pred ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEe-cCccccccCcceEEEEEeccCceEEEeccCCeEEEEE
Confidence 00 0000 011 3578899999999999988 89999999
Q ss_pred cCCCCCceeEEEe---ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-------------------------
Q 003279 749 IGSGSKGECIHEL---SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL------------------------- 800 (834)
Q Consensus 749 l~s~~~~~~i~~~---~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~------------------------- 800 (834)
+.++ .....+ ..|..+|+.++....++.+++++.+|.+++||.+++..+
T Consensus 477 mQSG---i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ 553 (910)
T KOG1539|consen 477 MQSG---IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL 553 (910)
T ss_pred cccC---eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc
Confidence 9998 444444 578999999999999999999999999999998765310
Q ss_pred -----------------EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 801 -----------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 801 -----------------~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.+.+|.+.|++++|||||++|++++.|++|++||
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 2456899999999999999999999999999998
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-21 Score=219.58 Aligned_cols=241 Identities=16% Similarity=0.251 Sum_probs=202.3
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC
Q 003279 591 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 670 (834)
Q Consensus 591 ~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~ 670 (834)
..|+...+.|+|.|+|++|++|+.||.|++|+.......-.++..+...|.+++...+ .|++|+.+++|.+|.+.++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeCCCC
Confidence 3688889999999999999999999999999987763334444447888988887633 6779999999999999887
Q ss_pred ceeeEe-ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEE
Q 003279 671 SCAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 748 (834)
Q Consensus 671 ~~i~~~-~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwD 748 (834)
..-..+ +..-++.+++|+.+|.++++|+.|-.|++.++.+......+.+|.++|.++.|+|.+++||+.+ ||.|+|||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 654332 2347899999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred cCCCCCceeEEEee----cC-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE---EeccCCCCeEEEEEeCCCCE
Q 003279 749 IGSGSKGECIHELS----CT-GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TLSAHDKLVSSLAASTVNGM 820 (834)
Q Consensus 749 l~s~~~~~~i~~~~----~~-~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~---~l~~h~~~V~~lafspdg~~ 820 (834)
+.++.....+..+. .. ...+..++|+|++..+++.+.|+.|++|+..+++.. ....+...+.++.|+|.|+|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 99874322222111 11 345677899999999999999999999999998876 33345556999999999999
Q ss_pred EEEEecCCcEEEeC
Q 003279 821 VASASHDKCVKIWK 834 (834)
Q Consensus 821 LaSgs~DG~I~IWd 834 (834)
||+++.||.|.|||
T Consensus 247 iAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 247 IAASTLDGQILVWN 260 (933)
T ss_pred EeeeccCCcEEEEe
Confidence 99999999999997
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-23 Score=228.69 Aligned_cols=253 Identities=21% Similarity=0.366 Sum_probs=223.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEE
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 643 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl 643 (834)
+.+++.+..+-.++|||... +..|...|.|+..-..++.+++|+.|..+-+|.+..... +..+.+|..+|.++
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~-i~S~~~hespIeSl 76 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA-ITSLTGHESPIESL 76 (825)
T ss_pred ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCch-hheeeccCCcceee
Confidence 34455566666778887553 346888889998877889999999999999999987654 66789999999999
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 003279 644 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 722 (834)
Q Consensus 644 ~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~ 722 (834)
.|++. +.+|++|+.+|+|++||++..+.++++.+ ...+.++.|+|-+.+++.++.|..+.+||.+..-|.+.+.+|..
T Consensus 77 ~f~~~-E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 77 TFDTS-ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred ecCcc-hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc
Confidence 99998 55888999999999999999998887765 56789999999999999999999999999999999999999999
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-
Q 003279 723 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL- 800 (834)
Q Consensus 723 ~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~- 800 (834)
.|.++.|+|+|++++.++ |.+++|||+..+ +.+.+|..|...+..+.|+|..-.++.|+.|++|++||+++-+.+
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~ 232 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS 232 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeeccccc---ccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEee
Confidence 999999999999999999 799999999888 788999999999999999999999999999999999999988887
Q ss_pred EeccCCCCeEEEEEeCCCCEEEEEecC
Q 003279 801 TLSAHDKLVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 801 ~l~~h~~~V~~lafspdg~~LaSgs~D 827 (834)
........|.+++|+|+++.+++|..+
T Consensus 233 s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 233 SGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccCCccCCceeeeecCCceeeecCchh
Confidence 455567889999999999998888654
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-21 Score=204.92 Aligned_cols=273 Identities=17% Similarity=0.323 Sum_probs=220.5
Q ss_pred cCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003279 500 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 579 (834)
Q Consensus 500 ~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IW 579 (834)
....+.|.+|+. +.|++|+...... .+....+-++ ...+-|.+|.+.|||+.|++|++-.++.||
T Consensus 428 S~~trhVyTgGk-gcVKVWdis~pg~-------------k~PvsqLdcl-~rdnyiRSckL~pdgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 428 SNPTRHVYTGGK-GCVKVWDISQPGN-------------KSPVSQLDCL-NRDNYIRSCKLLPDGRTLIVGGEASTLSIW 492 (705)
T ss_pred cCCcceeEecCC-CeEEEeeccCCCC-------------CCcccccccc-CcccceeeeEecCCCceEEeccccceeeee
Confidence 334456666655 6777885544311 1111111111 235679999999999999999999999999
Q ss_pred eCCCC--eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEe
Q 003279 580 CTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 657 (834)
Q Consensus 580 d~~t~--~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs 657 (834)
|+... +....+....-.+.+++.+||.+..++|+.||.|.|||+.+.. .++.+.+|.+.+.||.++++|.. |.+|+
T Consensus 493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDGascIdis~dGtk-lWTGG 570 (705)
T KOG0639|consen 493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISKDGTK-LWTGG 570 (705)
T ss_pred eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-eeecccCCCCCceeEEecCCCce-eecCC
Confidence 99754 3334454444567889999999999999999999999999754 58999999999999999999875 55999
Q ss_pred CCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEE
Q 003279 658 NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 737 (834)
Q Consensus 658 ~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~La 737 (834)
-|.+|+.||++.+..+......+.|.++.++|.+.++++|-.++.+.|....... .+.+.-|...|.++.|.+.|++++
T Consensus 571 lDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 571 LDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred CccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEEecccCceee
Confidence 9999999999999988888888999999999999999999999999998876543 445556999999999999999999
Q ss_pred EEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 738 SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 738 sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
+.+ |+.+..|...-+ ..+.... ....|.+|.++-|.++|++|+.|....||.+
T Consensus 650 StGkDnlLnawrtPyG---asiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYG---ASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ecCchhhhhhccCccc---cceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 988 999999998877 4444433 3678999999999999999999998888864
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.5e-23 Score=228.27 Aligned_cols=238 Identities=26% Similarity=0.409 Sum_probs=215.4
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 624 (834)
.+.+..|...|.|+..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.||.|+++..+|++|+.+|+|++||++
T Consensus 21 ~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 21 TREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred chhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence 45566899999999987788999999999999999999888888899999999999999999999999999999999999
Q ss_pred CCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeE
Q 003279 625 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYI 703 (834)
Q Consensus 625 s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I 703 (834)
..+ .++++.+|...+.++.|+|-+. ++++++.|+.+++||++...|...+.. ...+.++.|+|+|++++.++.|..+
T Consensus 101 eAk-~vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tv 178 (825)
T KOG0267|consen 101 EAK-IVRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTV 178 (825)
T ss_pred hhh-hhhhhhccccCcceeeeccceE-EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCccee
Confidence 765 4889999999999999999977 558999999999999998888888875 4457889999999999999999999
Q ss_pred EEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003279 704 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 704 ~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~s 782 (834)
+|||+..|+....|..|...+.++.|+|..-+++.|+ |++|++||+++. ..+.........|.+..|+|++..+++
T Consensus 179 ki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf---e~I~s~~~~~~~v~~~~fn~~~~~~~~ 255 (825)
T KOG0267|consen 179 KIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF---EVISSGKPETDGVRSLAFNPDGKIVLS 255 (825)
T ss_pred eeecccccccccccccccccccccccCchhhhhccCCCCceeeeecccee---EEeeccCCccCCceeeeecCCceeeec
Confidence 9999999999999999999999999999999999999 999999999876 667777777888999999999998777
Q ss_pred EEcCC
Q 003279 783 IGCYE 787 (834)
Q Consensus 783 gs~dg 787 (834)
|....
T Consensus 256 G~q~s 260 (825)
T KOG0267|consen 256 GEQIS 260 (825)
T ss_pred Cchhh
Confidence 76543
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-21 Score=204.10 Aligned_cols=269 Identities=15% Similarity=0.224 Sum_probs=219.1
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTE 582 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~IWd~~ 582 (834)
.++.+++.|+++++|-.... .-..++.+.--..+|.+++|.|+|. .+++++....++.||+.
T Consensus 226 plllvaG~d~~lrifqvDGk-----------------~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 226 PLLLVAGLDGTLRIFQVDGK-----------------VNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred ceEEEecCCCcEEEEEecCc-----------------cChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence 78899999999999955332 1223555556677899999999999 89999999999999999
Q ss_pred CCeEEE--EeccCC-CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC
Q 003279 583 SFTVKS--TLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 583 t~~~~~--~l~~h~-~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 659 (834)
+.+... .+.++. ..+.....++++.+|+..+..|.|.|....++.. +..+. -.+.|..++|+.+++.++++| .+
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el-i~s~K-ieG~v~~~~fsSdsk~l~~~~-~~ 365 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL-ITSFK-IEGVVSDFTFSSDSKELLASG-GT 365 (514)
T ss_pred ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh-hheee-eccEEeeEEEecCCcEEEEEc-CC
Confidence 876653 333443 4677889999999999999999999999988664 44444 467899999999987666555 58
Q ss_pred CcEEEEECCCCceeeEeecCCCe--eEEEEecCCCEEEEEEcCCeEEEEECCC------CeEEEEEeCCCCCEEEEEEcC
Q 003279 660 SEIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAAAIENYISILDVET------QVCRLKLQGHKNQVHSVCWNT 731 (834)
Q Consensus 660 g~I~lwDl~s~~~i~~~~~~~~i--~~l~~sp~g~~ll~~s~dg~I~iwDl~t------~~~~~~l~~h~~~I~sl~~sp 731 (834)
|.|++||++...++..+...+.+ +++|.++++.+|++|+..|.|.|||.++ .+++..+..-...|+++.|++
T Consensus 366 GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~ 445 (514)
T KOG2055|consen 366 GEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH 445 (514)
T ss_pred ceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc
Confidence 89999999999999999876665 5677779999999999999999999764 366777776778899999999
Q ss_pred CCCEEEEEe---CCeEEEEEcCCCCCceeEEEeec---CCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 732 SGEYLASVS---DELVRVWSIGSGSKGECIHELSC---TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 732 dg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~---~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
|..+|+.++ ++.+++-.+.+. .....+.. .-+.++|++|+|.+.++++|..+|.|.+|.+.
T Consensus 446 d~qiLAiaS~~~knalrLVHvPS~---TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 446 DAQILAIASRVKKNALRLVHVPSC---TVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred chhhhhhhhhccccceEEEeccce---eeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 999999988 668999998876 33333333 34668999999999999999999999999874
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-20 Score=190.04 Aligned_cols=253 Identities=15% Similarity=0.244 Sum_probs=199.9
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
..+..++.|+.++++..... +....-.|..+|.+|+|.++ ..+++|+-||.|+++|+.+
T Consensus 26 ~~LLvssWDgslrlYdv~~~--------------------~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 26 SDLLVSSWDGSLRLYDVPAN--------------------SLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred CcEEEEeccCcEEEEeccch--------------------hhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecC
Confidence 56677889999999955433 12223368899999999974 4788999999999999998
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 663 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 663 (834)
+... .+..|..+|.||.+++....+++||+|++|++||.+... ....+. ....|.++.... ..|++|..|..|.
T Consensus 85 ~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-~~~~~d-~~kkVy~~~v~g---~~LvVg~~~r~v~ 158 (323)
T KOG1036|consen 85 GNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-VVGTFD-QGKKVYCMDVSG---NRLVVGTSDRKVL 158 (323)
T ss_pred Ccce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-cccccc-cCceEEEEeccC---CEEEEeecCceEE
Confidence 7655 556799999999999988899999999999999998632 233333 344899998873 3566777899999
Q ss_pred EEECCCCceeeE---eecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC----eEEEEEeCCCC---------CEEEE
Q 003279 664 YWSINNGSCAGV---FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ----VCRLKLQGHKN---------QVHSV 727 (834)
Q Consensus 664 lwDl~s~~~i~~---~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~----~~~~~l~~h~~---------~I~sl 727 (834)
+||+++...... -...-.+.|+++.|++.-+++++.||.|.+=.++.. .....|+.|.. +|++|
T Consensus 159 iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai 238 (323)
T KOG1036|consen 159 IYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAI 238 (323)
T ss_pred EEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEecee
Confidence 999998665442 223456899999999889999999999888766654 44455555542 78999
Q ss_pred EEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003279 728 CWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 786 (834)
Q Consensus 728 ~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d 786 (834)
+|+|-...|++|+ ||.|.+||+.+. +.+..+..-...|.+++|+.+|..||++++.
T Consensus 239 ~Fhp~~~tfaTgGsDG~V~~Wd~~~r---Krl~q~~~~~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 239 AFHPIHGTFATGGSDGIVNIWDLFNR---KRLKQLAKYETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred EeccccceEEecCCCceEEEccCcch---hhhhhccCCCCceEEEEeccCCCeEEEEech
Confidence 9999988899988 999999999887 5555665557789999999999999998763
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-19 Score=201.98 Aligned_cols=280 Identities=17% Similarity=0.227 Sum_probs=230.0
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEeccC-CCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 003279 544 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVW 621 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~-~~~~l~~h-~~~I~~l~fspdg~~Latgs~Dg~I~IW 621 (834)
..+.+.--...|.|++|+.+.+.||.+-.||.|.||++...= ....+.++ ...|.+++|+ ++..|++.+.+|.|.-|
T Consensus 17 rcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~Ew 95 (691)
T KOG2048|consen 17 RCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEW 95 (691)
T ss_pred EEEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEE
Confidence 345555667789999999999999999999999999998643 33455554 4579999999 55678889999999999
Q ss_pred ecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec---CCCeeEEEEecCCCEEEEEE
Q 003279 622 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAA 698 (834)
Q Consensus 622 Dl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~---~~~i~~l~~sp~g~~ll~~s 698 (834)
|+.+.+. ...+....+.|++++.+|.+. .++.|++||.+++++...++....... .+.+.++.|+|++..++.|+
T Consensus 96 Dl~~lk~-~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs 173 (691)
T KOG2048|consen 96 DLHTLKQ-KYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGS 173 (691)
T ss_pred ecccCce-eEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecc
Confidence 9998664 666777789999999999976 566777899999999988877665543 47799999999999999999
Q ss_pred cCCeEEEEECCCCeEEEEEe-------C-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003279 699 IENYISILDVETQVCRLKLQ-------G-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 769 (834)
Q Consensus 699 ~dg~I~iwDl~t~~~~~~l~-------~-h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 769 (834)
.||.|++||+.++..+.... . ...-|.++.|-.++. |++|. .|+|.+||...+ ..+..+..|...|.
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~g---TLiqS~~~h~adVl 249 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFG---TLIQSHSCHDADVL 249 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCc---chhhhhhhhhccee
Confidence 99999999999987666222 1 233567888876665 45555 999999999988 78888999999999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeE--E---EeccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 770 SCVFHPTFPSLLVIGCYETLELWNMTENKT--L---TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 770 svafspdg~~L~sgs~dg~I~Iwdl~~~~~--~---~l~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
+++..+++.++++++-|+.|..|...+++. + ....|...|.+++..++ .|++|+.|..+.|
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 999999999999999999999888777643 2 45578899999999876 8999999998865
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-20 Score=206.97 Aligned_cols=357 Identities=17% Similarity=0.227 Sum_probs=254.4
Q ss_pred cccCCCCCceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCe-EEeecCCCC---CCCcccccccccCCCeeeeEEE
Q 003279 471 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNV-ESFLSPDDA---DPRDRVGRSAEVGKGFTFTEFQ 546 (834)
Q Consensus 471 ~~~~~s~~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v-~~~~s~~~~---~~~~~~~~~~~~~~g~~~~~~~ 546 (834)
...+.+.++++|.|.++...+......++..+. |+.-+-. .+|...... .++..-.++|...+...+....
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g-----g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~ 355 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVG-----GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEP 355 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEeeccc-----ccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecc
Confidence 344567789999999998755555444433332 1111111 112111110 1111222444433344455667
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC----CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 547 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 547 ~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~----t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
.+.||.+.|..++|+|.|++|++++.|-+-+||-.- +.-.+..-.-|...++|++|-+....+++|...+.+|+|+
T Consensus 356 ~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~ 435 (764)
T KOG1063|consen 356 VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFE 435 (764)
T ss_pred ccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeec
Confidence 788999999999999999999999999999998643 1223334456888999999998767888998899999997
Q ss_pred cCC-------------------------------------------CC--------------------------------
Q 003279 623 TEN-------------------------------------------PD-------------------------------- 627 (834)
Q Consensus 623 l~s-------------------------------------------~~-------------------------------- 627 (834)
... +.
T Consensus 436 aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLw 515 (764)
T KOG1063|consen 436 APKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLW 515 (764)
T ss_pred CcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccc
Confidence 540 00
Q ss_pred ceeeeeccCCCCeEEEEEccCCCcEEEEEeCC-----CcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCC
Q 003279 628 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIEN 701 (834)
Q Consensus 628 ~~i~~~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg 701 (834)
..+..+.+|...|++++.+|+++ +++++... ..|++|+..+...+..+.. .-.|+.++|+|++++|++++.|.
T Consensus 516 PEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR 594 (764)
T KOG1063|consen 516 PEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDR 594 (764)
T ss_pred hhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCc
Confidence 01234567999999999999976 77777543 3799999998887776654 45699999999999999999999
Q ss_pred eEEEEECCCCe----EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEE--EeecCCCceEEEEEe
Q 003279 702 YISILDVETQV----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH--ELSCTGNKFHSCVFH 774 (834)
Q Consensus 702 ~I~iwDl~t~~----~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~--~~~~~~~~I~svafs 774 (834)
++.+|...... .....+.|...|.++.|+|++.++++++ |.+|+||....... ..+. ....+...|+.++|.
T Consensus 595 t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d-~~i~~~a~~~~~~aVTAv~~~ 673 (764)
T KOG1063|consen 595 TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD-KYISRFACLKFSLAVTAVAYL 673 (764)
T ss_pred eEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchh-hhhhhhchhccCCceeeEEee
Confidence 99999875431 1223667999999999999999999999 99999999887632 2222 233467789999887
Q ss_pred CC-----CCEEEEEEcCCeEEEEECC------C-CeEE------EeccCCCCeEEEEEeCCC----------CEEEEEec
Q 003279 775 PT-----FPSLLVIGCYETLELWNMT------E-NKTL------TLSAHDKLVSSLAASTVN----------GMVASASH 826 (834)
Q Consensus 775 pd-----g~~L~sgs~dg~I~Iwdl~------~-~~~~------~l~~h~~~V~~lafspdg----------~~LaSgs~ 826 (834)
|- +..+++|-..|.|.+|..+ + +... ...+|...|+.+.|.|.. ..|++|++
T Consensus 674 ~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~ 753 (764)
T KOG1063|consen 674 PVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGD 753 (764)
T ss_pred ccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecc
Confidence 63 2367788889999999865 1 1110 234678889999999752 26799999
Q ss_pred CCcEEEeC
Q 003279 827 DKCVKIWK 834 (834)
Q Consensus 827 DG~I~IWd 834 (834)
|..++|++
T Consensus 754 D~~vri~n 761 (764)
T KOG1063|consen 754 DESVRIFN 761 (764)
T ss_pred cceeEEee
Confidence 99999985
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-19 Score=198.74 Aligned_cols=230 Identities=14% Similarity=0.209 Sum_probs=186.1
Q ss_pred CCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCC-CCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003279 501 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS-TSKVESCHFSPDGKLLATGGHDKKAVLW 579 (834)
Q Consensus 501 ~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH-~~~V~sl~fSpdg~~Lasgs~Dg~I~IW 579 (834)
..++.+|.+-.|++|++|..... +-...++.+| +..|.+++|++ +..|++.+.+|.|.-|
T Consensus 35 ~kS~~lAvsRt~g~IEiwN~~~~------------------w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~Ew 95 (691)
T KOG2048|consen 35 HKSNQLAVSRTDGNIEIWNLSNN------------------WFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEW 95 (691)
T ss_pred ccCCceeeeccCCcEEEEccCCC------------------ceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEE
Confidence 34466999999999999965442 1223445554 46799999995 5578888889999999
Q ss_pred eCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee-eeeccCCCCeEEEEEccCCCcEEEEEeC
Q 003279 580 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDN 658 (834)
Q Consensus 580 d~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i-~~~~~h~~~V~sl~fspdg~~llasgs~ 658 (834)
|+.+++.+..+....+.|++++.+|.++.++.|+.||.++.++...+.... +.+....+.|.+++|+|++.. +++|+.
T Consensus 96 Dl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~-i~~Gs~ 174 (691)
T KOG2048|consen 96 DLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK-IAGGSI 174 (691)
T ss_pred ecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE-EEeccc
Confidence 999999999999999999999999999999999999988888887655433 334445689999999999764 558999
Q ss_pred CCcEEEEECCCCceeeEee-----cCC----CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEE
Q 003279 659 NSEIRYWSINNGSCAGVFK-----CQS----GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCW 729 (834)
Q Consensus 659 Dg~I~lwDl~s~~~i~~~~-----~~~----~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~ 729 (834)
||.|++||..++..+.... ... -|.++.|.. ...|++|.+.|.|.+||...+..+..+..|...|.+++.
T Consensus 175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav 253 (691)
T KOG2048|consen 175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAV 253 (691)
T ss_pred CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEE
Confidence 9999999999988777332 122 256666664 478999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEe-CCeEEEEEcCC
Q 003279 730 NTSGEYLASVS-DELVRVWSIGS 751 (834)
Q Consensus 730 spdg~~Lasgs-Dg~I~IwDl~s 751 (834)
.+++.++++++ |+.|.-|...+
T Consensus 254 ~~~~d~vfsaGvd~~ii~~~~~~ 276 (691)
T KOG2048|consen 254 ADNEDRVFSAGVDPKIIQYSLTT 276 (691)
T ss_pred cCCCCeEEEccCCCceEEEEecC
Confidence 99988888888 98877776543
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.4e-21 Score=193.53 Aligned_cols=258 Identities=20% Similarity=0.303 Sum_probs=215.1
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEE
Q 003279 566 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 645 (834)
Q Consensus 566 ~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~f 645 (834)
.|++.-.++++. ...++.+.+|.+.|+.++.......+.+++.|.+.+||.++++.+ +..+.+|.+.|++|.|
T Consensus 126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C-L~~Y~GH~GSVNsikf 198 (481)
T KOG0300|consen 126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC-LATYTGHTGSVNSIKF 198 (481)
T ss_pred hheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccc-eeeecccccceeeEEe
Confidence 345555555532 245677889999999999988888999999999999999999774 8899999999999999
Q ss_pred ccCCCcEEEEEeCCCcEEEEEC------CCC--------c--------------------------eeeEee-cCCCeeE
Q 003279 646 HPSKEDLLCSCDNNSEIRYWSI------NNG--------S--------------------------CAGVFK-CQSGATQ 684 (834)
Q Consensus 646 spdg~~llasgs~Dg~I~lwDl------~s~--------~--------------------------~i~~~~-~~~~i~~ 684 (834)
++.+. ++++++.|++-.||.. ... + ++..+. +...|.+
T Consensus 199 h~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 199 HNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred ccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 99865 7779999999999962 110 0 111122 2334667
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003279 685 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 763 (834)
Q Consensus 685 l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 763 (834)
..|...+..+++++.|.+-.+||+++++.+..+.+|....+.++-+|.-+++++++ |.+.++||++.. ...+..|.+
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea--I~sV~VFQG 355 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA--IQSVAVFQG 355 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh--cceeeeecc
Confidence 77888899999999999999999999999999999999999999999999999999 999999999843 467888999
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe-EEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 764 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 764 ~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~-~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|...|+++.|..+.+ +++++.|.+|+|||+++-+ ++.....+.+++.++.+..+.+|+.--++..|+|||
T Consensus 356 HtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 356 HTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEe
Confidence 999999999998876 8899999999999998754 445556778899999998888888888888899987
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-20 Score=199.50 Aligned_cols=258 Identities=13% Similarity=0.185 Sum_probs=204.1
Q ss_pred EeCC-CcEEEEeCCCCeEEEEeccC-CCCeEEEEECCCCCEEEEEeC-CCeEEEEecCCCCceeeeeccCCCCeEEEEEc
Q 003279 570 GGHD-KKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 646 (834)
Q Consensus 570 gs~D-g~I~IWd~~t~~~~~~l~~h-~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fs 646 (834)
++.| .++.+||+.+|.....+++. ...-.++..- .+.+++++.. ...|.+|.+....... .+.--.++|.+++-+
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASS 90 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhh-hhcccccceeeeecC
Confidence 3444 45999999999999888765 2211222221 2356666654 4579999998655423 334456889999999
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECC---------CCeEEEE
Q 003279 647 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVE---------TQVCRLK 716 (834)
Q Consensus 647 pdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~---------t~~~~~~ 716 (834)
|+|. +++.|+..|.|++|.+.+|..+..+.. -..|+|+.|+.|+.+|++++.||.|.+|++. +-++...
T Consensus 91 n~G~-~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~ 169 (476)
T KOG0646|consen 91 NLGY-FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHI 169 (476)
T ss_pred CCce-EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceee
Confidence 9976 555666899999999999999888764 4569999999999999999999999999764 2467888
Q ss_pred EeCCCCCEEEEEEcCC--CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003279 717 LQGHKNQVHSVCWNTS--GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 793 (834)
Q Consensus 717 l~~h~~~I~sl~~spd--g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwd 793 (834)
+..|.-+|+++...+. ..+|++++ |.++++||+..+ ..+..+. ....+.+++.+|-+..+++|+.+|.|.+.+
T Consensus 170 f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 170 FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc---eeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeee
Confidence 9999999999988765 45788888 999999999998 4555444 367899999999999999999999999988
Q ss_pred CCCCe-----------------EEEeccCCC--CeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 794 MTENK-----------------TLTLSAHDK--LVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 794 l~~~~-----------------~~~l~~h~~--~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+.... ...+.+|.+ .|+|++++-||.+|++|+.||.|+|||
T Consensus 246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 74432 125678888 999999999999999999999999997
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-20 Score=190.90 Aligned_cols=285 Identities=19% Similarity=0.331 Sum_probs=220.7
Q ss_pred EEecCCCCCeEEEEEcC-----CCCEEEEEeCCCcEEEEeCCCCe---EEEEe--ccCCCCeEEEEECCC----CCEEEE
Q 003279 546 QLIPASTSKVESCHFSP-----DGKLLATGGHDKKAVLWCTESFT---VKSTL--EEHTQWITDVRFSPS----LSRLAT 611 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSp-----dg~~Lasgs~Dg~I~IWd~~t~~---~~~~l--~~h~~~I~~l~fspd----g~~Lat 611 (834)
.....|+.+|..++|++ +...+|+++. ..+.+|.....- .+..+ ..|......++|+-+ ..++|.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34568999999999985 2335666664 578888765432 33333 247788888999765 347899
Q ss_pred EeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec----CCCeeEEEE
Q 003279 612 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQMRF 687 (834)
Q Consensus 612 gs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~----~~~i~~l~~ 687 (834)
++.-|.|+|.|+.+... ...+.+|...|+.|.|+|+...++++++.|..|++|++.+..|+..|.. ...|.++.|
T Consensus 111 ~G~~GvIrVid~~~~~~-~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQC-SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred ecceeEEEEEecchhhh-ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 99999999999998664 7888999999999999999999999999999999999999999999874 567999999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCe------EEE----------------------EEeCCCCCEEEEEEcCCCCEEEEE
Q 003279 688 QPRLGRILAAAIENYISILDVETQV------CRL----------------------KLQGHKNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 688 sp~g~~ll~~s~dg~I~iwDl~t~~------~~~----------------------~l~~h~~~I~sl~~spdg~~Lasg 739 (834)
+.++.+|++++.|..|.+|++...+ +.. +-..|...|-|+.|- |.++++-
T Consensus 190 ~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk 267 (385)
T KOG1034|consen 190 SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK 267 (385)
T ss_pred cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeec
Confidence 9999999999999999999998421 110 112355666666665 5788887
Q ss_pred e-CCeEEEEEcCCC-----------CCceeEEEeecCCCceEEE--EEeCCCCEEEEEEcCCeEEEEECCCCeEE---Ee
Q 003279 740 S-DELVRVWSIGSG-----------SKGECIHELSCTGNKFHSC--VFHPTFPSLLVIGCYETLELWNMTENKTL---TL 802 (834)
Q Consensus 740 s-Dg~I~IwDl~s~-----------~~~~~i~~~~~~~~~I~sv--afspdg~~L~sgs~dg~I~Iwdl~~~~~~---~l 802 (834)
+ ++.|..|....- .....+.++.-....|+-+ +|.+-.+.|+.|...|.|++||++..++. ++
T Consensus 268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl 347 (385)
T KOG1034|consen 268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL 347 (385)
T ss_pred ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE
Confidence 7 999999987211 1122344454445555554 56777899999999999999999887763 22
Q ss_pred c--cCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 803 S--AHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 803 ~--~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
. .....|...+|+.|+.+|+..++|++|.-||
T Consensus 348 ~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 348 THSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred EeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 2 3356799999999999999999999999886
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-20 Score=194.04 Aligned_cols=243 Identities=18% Similarity=0.359 Sum_probs=190.1
Q ss_pred cCCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEeCC----------------CCeEEEEeccCCCCeEEEEECCC-CCEE
Q 003279 549 PASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTE----------------SFTVKSTLEEHTQWITDVRFSPS-LSRL 609 (834)
Q Consensus 549 ~gH~~~V~sl~fSpdg--~~Lasgs~Dg~I~IWd~~----------------t~~~~~~l~~h~~~I~~l~fspd-g~~L 609 (834)
.+|.+.|..+.-++-+ .+.|+-+..|.|.||++. ..+++.++.+|...=+.|+|+|- ...|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3677778887777644 466777789999999864 24667888999999999999993 3358
Q ss_pred EEEeCCCeEEEEecCCCCcee--eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC---ceeeEeecCCCeeE
Q 003279 610 ATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFKCQSGATQ 684 (834)
Q Consensus 610 atgs~Dg~I~IWDl~s~~~~i--~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~---~~i~~~~~~~~i~~ 684 (834)
++|..-+.|++|...++.+.+ ..+.+|+..|..|+|+|..+.+|++|+.||+|+|||++.+ .++.+-.+.+.|+.
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV 307 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV 307 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence 888888999999999877644 5677899999999999999999999999999999999988 56666667889999
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCC---CeEEEEEeCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCc----
Q 003279 685 MRFQPRLGRILAAAIENYISILDVET---QVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKG---- 755 (834)
Q Consensus 685 l~~sp~g~~ll~~s~dg~I~iwDl~t---~~~~~~l~~h~~~I~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~---- 755 (834)
|.|+.+...|++|+.||+++|||++. +.++..|+-|..+|++|.|+|.. ..|++++ |..|.|||+.-....
T Consensus 308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~ 387 (440)
T KOG0302|consen 308 ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEID 387 (440)
T ss_pred EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhc
Confidence 99999988899999999999999985 57888999999999999999954 3444444 999999999753210
Q ss_pred -----------eeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEE
Q 003279 756 -----------ECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELW 792 (834)
Q Consensus 756 -----------~~i~~~~~~~~~I~svafspdg~-~L~sgs~dg~I~Iw 792 (834)
..+..+.-....+..+.|++.-+ +|++.+.|| +.||
T Consensus 388 ~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 388 QEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred cccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 01111222345677888988765 455555565 4444
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-20 Score=197.87 Aligned_cols=258 Identities=18% Similarity=0.232 Sum_probs=201.1
Q ss_pred eEEEEEcCCCC-EEEEEeCCCcEEEEeCCC--CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceee
Q 003279 555 VESCHFSPDGK-LLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 631 (834)
Q Consensus 555 V~sl~fSpdg~-~Lasgs~Dg~I~IWd~~t--~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~ 631 (834)
|.+++|+.... .+++.+.|..|++|.-.. ++....-+.....-.|++......|+++|+..+.|+|||+.. +.+.+
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl~hr 115 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRA-KLIHR 115 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHH-HHHhh
Confidence 89999998663 234456788999996332 222211111222344555555568999999999999999994 56689
Q ss_pred eeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCC--CeeEEEEecCCCEEE-EEEcCCeEEEEEC
Q 003279 632 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRIL-AAAIENYISILDV 708 (834)
Q Consensus 632 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~--~i~~l~~sp~g~~ll-~~s~dg~I~iwDl 708 (834)
.+.+|...|+++.+..... +|++++..|.|.|..+.++.....|.+.. .+.-+.|++..+.++ +++.+|.|.+||+
T Consensus 116 ~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv 194 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV 194 (673)
T ss_pred hccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence 9999999999999987754 77899999999999999998888888753 366899999877655 5566799999999
Q ss_pred CCCeEEEEE-eCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003279 709 ETQVCRLKL-QGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 785 (834)
Q Consensus 709 ~t~~~~~~l-~~h~~~I~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~ 785 (834)
....++..+ +.|..+...|||+|... +|++.+ |..|++||+++.....++. -..+...++|.++|.+|++|..
T Consensus 195 ~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~----y~~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 195 QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT----YSHPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred cCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee----ecCCcceeeecCCceEEEeecC
Confidence 988777665 45999999999999665 555556 9999999999763323332 3678899999999999999999
Q ss_pred CCeEEEEECCCCe-EE-EeccCCCCeEEEEEeCCC
Q 003279 786 YETLELWNMTENK-TL-TLSAHDKLVSSLAASTVN 818 (834)
Q Consensus 786 dg~I~Iwdl~~~~-~~-~l~~h~~~V~~lafspdg 818 (834)
.|.|+.||++..+ ++ .+..|+..|++|+|-+..
T Consensus 271 ~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 271 KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9999999998765 33 677999999999998864
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.2e-20 Score=194.97 Aligned_cols=294 Identities=18% Similarity=0.256 Sum_probs=213.7
Q ss_pred CeeeeEEEEecCCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEeCCC----CeEEEEeccCCCCeEEEEECC-CCCEEEE
Q 003279 539 GFTFTEFQLIPASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSP-SLSRLAT 611 (834)
Q Consensus 539 g~~~~~~~~l~gH~~~V~sl~fSpdg--~~Lasgs~Dg~I~IWd~~t----~~~~~~l~~h~~~I~~l~fsp-dg~~Lat 611 (834)
...+.....++-|.++|++++|+|.. +++|+|..-|.|-+||+.+ ...+..+..|..+|.++.|+| +...+++
T Consensus 173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 173 LDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred cccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee
Confidence 34445567778899999999999954 5889999999999999942 234566788999999999999 4568999
Q ss_pred EeCCCeEEEEecCCCCce-eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce-eeEee-cCCCeeEEEEe
Q 003279 612 SSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-CQSGATQMRFQ 688 (834)
Q Consensus 612 gs~Dg~I~IWDl~s~~~~-i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~-i~~~~-~~~~i~~l~~s 688 (834)
.|.||+|++-|++..... +.........+.++.|+.+...++ .++.=|...+||++++.. ...+. +...|..++++
T Consensus 253 sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred eccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence 999999999999875421 222222445677788887766555 555566999999998665 33333 35589999999
Q ss_pred cCCC-EEEEEEcCCeEEEEECCCCe----EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC-CCceeEEEe
Q 003279 689 PRLG-RILAAAIENYISILDVETQV----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG-SKGECIHEL 761 (834)
Q Consensus 689 p~g~-~ll~~s~dg~I~iwDl~t~~----~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~-~~~~~i~~~ 761 (834)
|-.. +|++++.|++.+|||++.-. +......|...|.+..|||.+-.|++.+ |+.|+|||..-- ........+
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I 411 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI 411 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee
Confidence 9655 56778889999999998632 2344456999999999999876677777 999999998411 111222222
Q ss_pred ec---CC--CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCC-CCeEE-EEEeCCCC-EEEEEecCCcEEE
Q 003279 762 SC---TG--NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-KLVSS-LAASTVNG-MVASASHDKCVKI 832 (834)
Q Consensus 762 ~~---~~--~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~-~~V~~-lafspdg~-~LaSgs~DG~I~I 832 (834)
.. +. -......|.|+..+|+++..-..|-|||-..++.+ .+.... ..|.+ ..|+|-+. +++-++..|.|+|
T Consensus 412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~v 491 (498)
T KOG4328|consen 412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYV 491 (498)
T ss_pred eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEE
Confidence 21 11 12345689999999999998889999999988855 433222 24444 47999888 4444556788988
Q ss_pred e
Q 003279 833 W 833 (834)
Q Consensus 833 W 833 (834)
|
T Consensus 492 f 492 (498)
T KOG4328|consen 492 F 492 (498)
T ss_pred E
Confidence 8
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6e-21 Score=214.29 Aligned_cols=234 Identities=18% Similarity=0.341 Sum_probs=195.1
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEe
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWC 580 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpd-g~~Lasgs~Dg~I~IWd 580 (834)
.+++|++.+..+.|.+|+..... .-..+..|..|+..|++++|++- ..+|++|+.||+|++||
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~----------------rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~D 162 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSI----------------RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWD 162 (839)
T ss_pred hhhhheeecCCCcEEEEecCccc----------------cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEe
Confidence 35788888888999999554321 11235678899999999999984 56899999999999999
Q ss_pred CCCCeEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC
Q 003279 581 TESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 581 ~~t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 659 (834)
+...+...++.+..+.|.+|.|+| .+.+|+++.+.|.+.+||++....+...+..|.++|.|+.|+|+ ..+||+|+.|
T Consensus 163 lR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn-r~~lATGGRD 241 (839)
T KOG0269|consen 163 LRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN-REWLATGGRD 241 (839)
T ss_pred eecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC-CceeeecCCC
Confidence 999999999999999999999999 57889999999999999999988888999999999999999996 5588999999
Q ss_pred CcEEEEECCCCc--eeeEeecCCCeeEEEEecCCCEEEEEEc---CCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcC-C
Q 003279 660 SEIRYWSINNGS--CAGVFKCQSGATQMRFQPRLGRILAAAI---ENYISILDVETQ-VCRLKLQGHKNQVHSVCWNT-S 732 (834)
Q Consensus 660 g~I~lwDl~s~~--~i~~~~~~~~i~~l~~sp~g~~ll~~s~---dg~I~iwDl~t~-~~~~~l~~h~~~I~sl~~sp-d 732 (834)
+.|+|||+.+.+ .+.++....++.++.|-|...+.++.+. |-.|+|||++.. -+..++..|...++.++|.. |
T Consensus 242 K~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d 321 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGD 321 (839)
T ss_pred ccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCC
Confidence 999999998654 4556666788999999998777665554 679999999876 56778888999999999965 4
Q ss_pred CCEEEEEe-CCeEEEEEcCCC
Q 003279 733 GEYLASVS-DELVRVWSIGSG 752 (834)
Q Consensus 733 g~~Lasgs-Dg~I~IwDl~s~ 752 (834)
...+.+++ |++|..-.+++.
T Consensus 322 ~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 322 RINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeeEeecCccHHHHhhhhcc
Confidence 55677777 887766555544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.3e-20 Score=202.36 Aligned_cols=269 Identities=19% Similarity=0.307 Sum_probs=215.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeee
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 633 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~ 633 (834)
.|..++|-|||.-|+.+. +..+.|||...|..+.++++|.+.|+|++|+.||+.+++|+.|+.|.+|+..-.. + ..
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG--~-Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG--I-LK 89 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc--e-ee
Confidence 699999999999888775 4589999999999999999999999999999999999999999999999876433 2 22
Q ss_pred ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 003279 634 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 713 (834)
Q Consensus 634 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~ 713 (834)
..|.+.|.|+.|+|-.. .+++|+- ...-+|..... .+...+....+.+.+|..||.+++.|-.+|+|.+-+.. +++
T Consensus 90 YSH~D~IQCMsFNP~~h-~LasCsL-sdFglWS~~qK-~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEe 165 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITH-QLASCSL-SDFGLWSPEQK-SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEE 165 (1081)
T ss_pred eccCCeeeEeecCchHH-Hhhhcch-hhccccChhhh-hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCc
Confidence 45999999999999855 5667774 35678887643 34444455779999999999999999999999998654 333
Q ss_pred EEEEe---CCCCCEEEEEEcCCC-----CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003279 714 RLKLQ---GHKNQVHSVCWNTSG-----EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 784 (834)
Q Consensus 714 ~~~l~---~h~~~I~sl~~spdg-----~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs 784 (834)
...+. +.+++|.+++|+|.. ..+++.. ..++.+|.+.. ..+..-..-.-...|+.+.++|.++++|+
T Consensus 166 k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG----~~Igk~r~L~FdP~CisYf~NGEy~LiGG 241 (1081)
T KOG1538|consen 166 KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG----KQIGKDRALNFDPCCISYFTNGEYILLGG 241 (1081)
T ss_pred ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc----eeecccccCCCCchhheeccCCcEEEEcc
Confidence 33333 467899999999853 4566666 66777777754 23333333455667899999999999999
Q ss_pred cCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 785 CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 785 ~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+|+.+.+|.-+.-..-++...+..|+.++..|++.+++.|+.||+|..|+
T Consensus 242 sdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 242 SDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred CCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 99999999755544446667888999999999999999999999998764
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.6e-20 Score=185.83 Aligned_cols=208 Identities=19% Similarity=0.325 Sum_probs=174.6
Q ss_pred ccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCC------c-----e---eeeeccCCCCeEEEEEccCCCcEEEE
Q 003279 591 EEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD------Y-----S---LRTFTGHSTTVMSLDFHPSKEDLLCS 655 (834)
Q Consensus 591 ~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s~~------~-----~---i~~~~~h~~~V~sl~fspdg~~llas 655 (834)
..|.+.|+++...+ .|+++++|+.||.|.+||+.+.. . + .....+|...|.++.|.|-...+|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 35889999999988 58999999999999999997533 0 0 11234688899999999988889999
Q ss_pred EeCCCcEEEEECCCCceeeEeecCCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCC
Q 003279 656 CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR---LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 732 (834)
Q Consensus 656 gs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~---g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spd 732 (834)
++.|.+++|||.++-+....|+.++.|.+-+++|- ...+++|..+-.|++.|+.+|.+...+.+|...|.++.|+|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 99999999999999999999999999999999984 335666667789999999999999999999999999999998
Q ss_pred CCEEE-EEe-CCeEEEEEcCCCC------------CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 003279 733 GEYLA-SVS-DELVRVWSIGSGS------------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 798 (834)
Q Consensus 733 g~~La-sgs-Dg~I~IwDl~s~~------------~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~ 798 (834)
.+++. +++ ||.|++||++.-. ....+..-..|.+.|..++|..++.++++++.|..+++|+..+|+
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 87654 555 9999999998642 111222234567889999999999999999999999999998775
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=186.11 Aligned_cols=267 Identities=18% Similarity=0.287 Sum_probs=206.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCC------------eEEEEec-cCCCCeEEEEEC-------CCCCEEEEEeC
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESF------------TVKSTLE-EHTQWITDVRFS-------PSLSRLATSSA 614 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~------------~~~~~l~-~h~~~I~~l~fs-------pdg~~Latgs~ 614 (834)
...+.|+|||..|++-+.|..+.+|++... +...+++ .....|.+.+|. |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 557899999999999999999999986421 0111111 234568888886 56788999999
Q ss_pred CCeEEEEecCCCCceeeeec--cCCC---CeEEEEEccCCCcEEEEEeCCCcEEEEEC-CCCceeeEe---ec-----CC
Q 003279 615 DRTVRVWDTENPDYSLRTFT--GHST---TVMSLDFHPSKEDLLCSCDNNSEIRYWSI-NNGSCAGVF---KC-----QS 680 (834)
Q Consensus 615 Dg~I~IWDl~s~~~~i~~~~--~h~~---~V~sl~fspdg~~llasgs~Dg~I~lwDl-~s~~~i~~~---~~-----~~ 680 (834)
|.-|++||.-+++. ...+. .|-. ...+++|+|||..++ ++....|++||+ +.|.-...+ .. .+
T Consensus 132 ~~PIh~wdaftG~l-raSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKL-RASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cCceeeeecccccc-ccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 99999999998775 22222 2333 356899999999776 556889999999 555432222 11 34
Q ss_pred CeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcee
Q 003279 681 GATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGEC 757 (834)
Q Consensus 681 ~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~ 757 (834)
-+.|++|+|-. +.+++++....+-||.-....++..+.+|.+.|+.++|.++|+.|++|. |..|.+||++... ..
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~--~p 286 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR--DP 286 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc--ch
Confidence 58899999955 4788888889999999999999999999999999999999999999998 8899999999763 34
Q ss_pred EEEeecCCC---ceEEEEEeCCCCEEEEEEcCCeEEEEECCC-Ce-EEEeccCCCCeEEEEEeCCCCEEEEEec
Q 003279 758 IHELSCTGN---KFHSCVFHPTFPSLLVIGCYETLELWNMTE-NK-TLTLSAHDKLVSSLAASTVNGMVASASH 826 (834)
Q Consensus 758 i~~~~~~~~---~I~svafspdg~~L~sgs~dg~I~Iwdl~~-~~-~~~l~~h~~~V~~lafspdg~~LaSgs~ 826 (834)
+..+..|.. .-.-....|++.+|++|+.+|.|++||+++ +. +..+..|...|+.++++|--.++|+++.
T Consensus 287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 444444433 233345678999999999999999999988 55 4467789999999999999888888764
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.8e-20 Score=201.59 Aligned_cols=282 Identities=15% Similarity=0.212 Sum_probs=208.5
Q ss_pred cCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003279 500 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 579 (834)
Q Consensus 500 ~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IW 579 (834)
.....+++.+..|+.|.+|....-.. . .....+.....|.+.|..+.|.|....|++++.|.++++|
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~f---------r----~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVF---------R----LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW 127 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhc---------c----hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeee
Confidence 34567889999999999985533210 0 0111235566899999999999966789999999999999
Q ss_pred eCCCCeEEEE--eccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCCCc--------------------------ee
Q 003279 580 CTESFTVKST--LEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY--------------------------SL 630 (834)
Q Consensus 580 d~~t~~~~~~--l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~s~~~--------------------------~i 630 (834)
|++..+++.. +.+|...|.++||.++ ...|++|+.||.|.|||++.... .+
T Consensus 128 dvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~ 207 (720)
T KOG0321|consen 128 DVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI 207 (720)
T ss_pred eeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc
Confidence 9999888866 8899999999999995 56789999999999999874320 01
Q ss_pred eeeccCCCCeEE---EEEccCCCcEEEEEeC-CCcEEEEECCCCceeeEee---------c---CCCeeEEEEecCCCEE
Q 003279 631 RTFTGHSTTVMS---LDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFK---------C---QSGATQMRFQPRLGRI 694 (834)
Q Consensus 631 ~~~~~h~~~V~s---l~fspdg~~llasgs~-Dg~I~lwDl~s~~~i~~~~---------~---~~~i~~l~~sp~g~~l 694 (834)
.....+...|.+ +.+..|.. .||+++. |+.|+|||++...+..... + ..++.++.....|.++
T Consensus 208 ~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L 286 (720)
T KOG0321|consen 208 RKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL 286 (720)
T ss_pred cccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence 112234444444 44445544 5556665 9999999999765443221 1 2357888888889999
Q ss_pred EEEEcCCeEEEEECCCC--eEEEEEeCCCCC--EEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003279 695 LAAAIENYISILDVETQ--VCRLKLQGHKNQ--VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 769 (834)
Q Consensus 695 l~~s~dg~I~iwDl~t~--~~~~~l~~h~~~--I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 769 (834)
++.+.|+.|++|++.+. .++..+.++... ...-..+||+.+|++++ |...++|.+.+.+ .....+.+|...|+
T Consensus 287 ~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt 364 (720)
T KOG0321|consen 287 FASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE--APPALLLGHTREVT 364 (720)
T ss_pred EEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc--CChhhhhCcceEEE
Confidence 99999999999999864 344455443321 12335689999999999 9999999998875 45556778899999
Q ss_pred EEEEeCCC-CEEEEEEcCCeEEEEECCCC
Q 003279 770 SCVFHPTF-PSLLVIGCYETLELWNMTEN 797 (834)
Q Consensus 770 svafspdg-~~L~sgs~dg~I~Iwdl~~~ 797 (834)
+++|.|.. .-+++++.|..++||++..+
T Consensus 365 ~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 365 TVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred EEeeccccCCCceeeccCcceEEEeccCc
Confidence 99998753 33777788999999999654
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-17 Score=181.49 Aligned_cols=312 Identities=27% Similarity=0.430 Sum_probs=236.6
Q ss_pred cCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCC-CCeEEEEE-cCCCC-EEEEEeC-CCc
Q 003279 500 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHF-SPDGK-LLATGGH-DKK 575 (834)
Q Consensus 500 ~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~-~~V~sl~f-Spdg~-~Lasgs~-Dg~ 575 (834)
......+..++.|+.+.+|...... ..+..+.++. ..+..+.+ ++++. +++..+. |+.
T Consensus 74 ~~~~~~~~~~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 135 (466)
T COG2319 74 SPDGELLLSGSSDGTIKLWDLDNGE------------------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGT 135 (466)
T ss_pred CCCCcEEEEecCCCcEEEEEcCCCc------------------eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCcc
Confidence 4445677777788899998655442 2234444433 36777777 88887 5555444 999
Q ss_pred EEEEeCCC-CeEEEEeccCCCCeEEEEECCCCCEEEEEeC-CCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEE
Q 003279 576 AVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 653 (834)
Q Consensus 576 I~IWd~~t-~~~~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~ll 653 (834)
+.+|+... ......+..|...|.+++|+|++.++++++. |+.+++|++.... .+..+.+|...|.+++|+|++..++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~ 214 (466)
T COG2319 136 VKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSSLAFSPDGGLLI 214 (466)
T ss_pred EEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCceEEEEEcCCcceEE
Confidence 99999998 8888899999999999999999998988886 9999999999743 4777788999999999999887566
Q ss_pred EEEeCCCcEEEEECCCCceee-EeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE-EEEEeCCCCCEEEEEEcC
Q 003279 654 CSCDNNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCWNT 731 (834)
Q Consensus 654 asgs~Dg~I~lwDl~s~~~i~-~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~-~~~l~~h~~~I~sl~~sp 731 (834)
++++.|+.|++||...+..+. .+..+.......|++++..+++++.++.+++||++.... ...+..|...|.++.|+|
T Consensus 215 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 294 (466)
T COG2319 215 ASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294 (466)
T ss_pred EEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC
Confidence 666899999999999777777 455433332227999988888999999999999997654 444467889999999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCCCceeEEEe--ecCCCceEEEEEeCCCCEEEEE-EcCCeEEEEECCCCeEEEeccCCC
Q 003279 732 SGEYLASVS-DELVRVWSIGSGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVI-GCYETLELWNMTENKTLTLSAHDK 807 (834)
Q Consensus 732 dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~--~~~~~~I~svafspdg~~L~sg-s~dg~I~Iwdl~~~~~~~l~~h~~ 807 (834)
++..+++++ |+.+.+||+.+.. ..... ..|...+..+.|.+++..++.+ ..|+.+.+|++.............
T Consensus 295 ~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 371 (466)
T COG2319 295 DGKLLASGSSDGTVRLWDLETGK---LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS 371 (466)
T ss_pred CCCEEEEeeCCCcEEEEEcCCCc---eEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc
Confidence 888888876 8889999888773 33333 3566678888884332556666 577889999998887333222333
Q ss_pred CeEEEEEeCCCCEEEE-EecCCcEEEeC
Q 003279 808 LVSSLAASTVNGMVAS-ASHDKCVKIWK 834 (834)
Q Consensus 808 ~V~~lafspdg~~LaS-gs~DG~I~IWd 834 (834)
.+..+.+.+ ...++. +..++.+.+|+
T Consensus 372 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 398 (466)
T COG2319 372 NVLSVSFSP-DGRVVSSGSTDGTVRLWD 398 (466)
T ss_pred eEEEEEECC-CCCEEEEecCCCceEEEe
Confidence 388999988 544444 68899999996
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-20 Score=219.45 Aligned_cols=243 Identities=19% Similarity=0.352 Sum_probs=202.6
Q ss_pred CCeEEEEEcCCCCE----EEEEeCCCcEEEEeCCCC------eEEEEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEEE
Q 003279 553 SKVESCHFSPDGKL----LATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVW 621 (834)
Q Consensus 553 ~~V~sl~fSpdg~~----Lasgs~Dg~I~IWd~~t~------~~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~IW 621 (834)
.+.+.++|.+.|.. ||.|.+||.|.+||.... ..+.+...|++.|..+.|++... +||+|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 45778999887665 899999999999997652 33456678999999999999754 99999999999999
Q ss_pred ecCCCCceeee-eccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC---eeEEEEecCCCE-EEE
Q 003279 622 DTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG---ATQMRFQPRLGR-ILA 696 (834)
Q Consensus 622 Dl~s~~~~i~~-~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~---i~~l~~sp~g~~-ll~ 696 (834)
|+.+.+.+... .....+.|.+++|+..-.++|++++.+|.+.|||++..+.+..+..... +..+.|+|+... +++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 99986543333 2224578999999998889999999999999999999888777765444 788999998654 555
Q ss_pred EEcCC---eEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEE
Q 003279 697 AAIEN---YISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS 770 (834)
Q Consensus 697 ~s~dg---~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~s 770 (834)
++.|. .|.+||++.- .++..+++|...|.++.|++.+ ++|++++ |+.|.+|+.+++ +.+.++......+..
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---Evl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---EVLGELPAQGNWCFD 301 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---eEeeecCCCCcceee
Confidence 55543 7999999865 6777888999999999999966 7778777 999999999998 888899888999999
Q ss_pred EEEeCCCC-EEEEEEcCCeEEEEECCCCe
Q 003279 771 CVFHPTFP-SLLVIGCYETLELWNMTENK 798 (834)
Q Consensus 771 vafspdg~-~L~sgs~dg~I~Iwdl~~~~ 798 (834)
+.|.|... .+++.+.||.|.||.+.+..
T Consensus 302 v~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 302 VQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999987 67788889999999987655
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-17 Score=180.87 Aligned_cols=284 Identities=29% Similarity=0.466 Sum_probs=228.1
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEE
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRV 620 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~-Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~I 620 (834)
.....+..|...|.+++|+|++.++++++. |+.+++|++..++.+..+.+|...|.+++|+|++. ++++++.|+.|++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 456778899999999999999999998886 99999999999899999999999999999999988 5555599999999
Q ss_pred EecCCCCceee-eeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce-eeEe-ecCCCeeEEEEecCCCEEEEE
Q 003279 621 WDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF-KCQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 621 WDl~s~~~~i~-~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~-i~~~-~~~~~i~~l~~sp~g~~ll~~ 697 (834)
||...+.. +. .+.+|...+ ...|++++ .++++++.|+.+++|++..... +..+ .+...+.++.|.|++..++++
T Consensus 226 wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 302 (466)
T COG2319 226 WDLSTGKL-LRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302 (466)
T ss_pred EECCCCcE-EeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEe
Confidence 98885443 44 678888775 44899998 4666899999999999987664 4443 345779999999988888888
Q ss_pred EcCCeEEEEECCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEE-e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003279 698 AIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASV-S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 773 (834)
Q Consensus 698 s~dg~I~iwDl~t~~~~~~l~--~h~~~I~sl~~spdg~~Lasg-s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svaf 773 (834)
+.|+.+.+||..+........ .|...+..+.|.+++..++.+ . |+.+.+|++.... ....... ...+..+.+
T Consensus 303 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~ 378 (466)
T COG2319 303 SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---PLKTLEG-HSNVLSVSF 378 (466)
T ss_pred eCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---eeEEecC-CceEEEEEE
Confidence 889889999999887666665 788889999994333566655 4 8889999998873 2222222 222888889
Q ss_pred eCCCCEEEE-EEcCCeEEEEECCCCeEEEeccCC-CCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 774 HPTFPSLLV-IGCYETLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 774 spdg~~L~s-gs~dg~I~Iwdl~~~~~~~l~~h~-~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.+ ...++. +..++.+.+|+............. ..+....+++++..+++++.++.+++|+
T Consensus 379 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 379 SP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred CC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence 88 533443 577889999999998887555444 8899999999999999999999999995
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.1e-19 Score=187.41 Aligned_cols=296 Identities=19% Similarity=0.271 Sum_probs=211.2
Q ss_pred eEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC--
Q 003279 505 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-- 582 (834)
Q Consensus 505 ~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~-- 582 (834)
++++|+.|..|++|......... .+..+.....|..|...|++|.|+|+|.+||+|+.+|.|.+|-..
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~----------~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~ 97 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGG----------GDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDV 97 (434)
T ss_pred ceecccCccceeeeeeeecCCCC----------CceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCc
Confidence 88999999999999555443321 124566778899999999999999999999999999999999644
Q ss_pred ------C--------CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccC
Q 003279 583 ------S--------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 648 (834)
Q Consensus 583 ------t--------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspd 648 (834)
+ ......+.+|.+.|..++|++++.++++++-|..+++||+..+.. ...+..|...|..++|.|-
T Consensus 98 ~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l-~~~~~dh~~yvqgvawDpl 176 (434)
T KOG1009|consen 98 RIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL-LAILDDHEHYVQGVAWDPL 176 (434)
T ss_pred CCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee-Eeeccccccccceeecchh
Confidence 2 345567789999999999999999999999999999999998764 7888999999999999998
Q ss_pred CCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEE
Q 003279 649 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 728 (834)
Q Consensus 649 g~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~ 728 (834)
+. ++++-+.|...+.+.+.....+..... .....-.+.+. .....++|.-++. ......++
T Consensus 177 ~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~-~~m~~~~~~~~--------e~~s~rLfhDeTl---------ksFFrRls 237 (434)
T KOG1009|consen 177 NQ-YVASKSSDRHPEGFSAKLKQVIKRHGL-DIMPAKAFNER--------EGKSTRLFHDETL---------KSFFRRLS 237 (434)
T ss_pred hh-hhhhhccCcccceeeeeeeeeeeeeee-eEeeecccCCC--------CcceeeeeecCch---------hhhhhhcc
Confidence 66 555777787777776665443333221 00000001111 1112333322221 22345678
Q ss_pred EcCCCCEEEEEe-----CC-----eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC-----------------CCEEE
Q 003279 729 WNTSGEYLASVS-----DE-----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT-----------------FPSLL 781 (834)
Q Consensus 729 ~spdg~~Lasgs-----Dg-----~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspd-----------------g~~L~ 781 (834)
|+|||.+|++.. .+ ..++|+-... ..++..+.+.......+.|+|- .+.++
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l--~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvf 315 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDL--KRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVF 315 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeeccccc--cCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEE
Confidence 889998887643 22 3455554322 2444555555555555555441 23466
Q ss_pred EEEcCCeEEEEECCCCeEE--EeccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 782 VIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 782 sgs~dg~I~Iwdl~~~~~~--~l~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
+....+.|+|||..+-+++ .-.-|-..|++++|++||.+|+..+.||...+
T Consensus 316 aiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 316 AIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred EEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 6677779999999998877 33468899999999999999999999997643
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-19 Score=191.80 Aligned_cols=236 Identities=19% Similarity=0.362 Sum_probs=186.4
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCe---EEE------------------EeccCCCCeEEEEECCC-CCEEEEEeCCCeEEE
Q 003279 563 DGKLLATGGHDKKAVLWCTESFT---VKS------------------TLEEHTQWITDVRFSPS-LSRLATSSADRTVRV 620 (834)
Q Consensus 563 dg~~Lasgs~Dg~I~IWd~~t~~---~~~------------------~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~I 620 (834)
-|+|+|.|+.|..|.|||+.-.. +.. .-.+|++.|.++.|+.. ...||+||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 36799999999999999975211 111 12369999999999875 568999999999999
Q ss_pred EecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-CceeeEeecCCCeeEEEEecCCC-EEEEEE
Q 003279 621 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLG-RILAAA 698 (834)
Q Consensus 621 WDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s-~~~i~~~~~~~~i~~l~~sp~g~-~ll~~s 698 (834)
||+.+++. ..++..|...|.++.|+|....++++|+.|++|.+.|.+. ...-..++..+.|..++|.|... .++++.
T Consensus 271 WD~~~g~p-~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 271 WDVDTGKP-KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EEcCCCCc-ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 99998774 7788889999999999999999999999999999999994 34445666678999999999654 566667
Q ss_pred cCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003279 699 IENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 775 (834)
Q Consensus 699 ~dg~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp 775 (834)
.||.|+-+|+|.. +++.++..|...|.+|++++.-. ++++++ |+.|++|++..... ..+......-+...|.++.|
T Consensus 350 ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~~~~~~rl~c~~~~~ 428 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEHSFKLGRLHCFALDP 428 (463)
T ss_pred CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccccccccccceeecccCC
Confidence 7899999999976 99999999999999999988644 566666 99999999976532 22222222234467778888
Q ss_pred CCCEE-EEEEcCCeEEEEECCCCeEE
Q 003279 776 TFPSL-LVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 776 dg~~L-~sgs~dg~I~Iwdl~~~~~~ 800 (834)
+-.++ ++|+..+.++|||+.+...+
T Consensus 429 ~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 429 DVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CcceEEEecCccceEEEeecccChhH
Confidence 87654 45566667999999887654
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=192.52 Aligned_cols=256 Identities=16% Similarity=0.247 Sum_probs=203.4
Q ss_pred EeCCCCeEEEEeccCCCCeEEEEECCCC--CEEEEEeCCCeEEEEecC---CCCceeeeeccCCCCeEEEEEccCCCcEE
Q 003279 579 WCTESFTVKSTLEEHTQWITDVRFSPSL--SRLATSSADRTVRVWDTE---NPDYSLRTFTGHSTTVMSLDFHPSKEDLL 653 (834)
Q Consensus 579 Wd~~t~~~~~~l~~h~~~I~~l~fspdg--~~Latgs~Dg~I~IWDl~---s~~~~i~~~~~h~~~V~sl~fspdg~~ll 653 (834)
+|+.+......++.+.+.|++++|+|.. +++|+|+..|.|-+||+. .....+..+..|..+|.+|.|+|.+...+
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 4455555666777789999999999953 588899999999999995 22234577888999999999999988889
Q ss_pred EEEeCCCcEEEEECCCCceeeEeec---CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE-EEEEeCCCCCEEEEEE
Q 003279 654 CSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCW 729 (834)
Q Consensus 654 asgs~Dg~I~lwDl~s~~~i~~~~~---~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~-~~~l~~h~~~I~sl~~ 729 (834)
++.+.||+|++-|++.......+.. ...+..+.|+.+...++++..-|.+.+||++++.. ...+.-|...|++|++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 9999999999999998755444443 33467788888888899998888999999998754 6667779999999999
Q ss_pred cCCC-CEEEEEe-CCeEEEEEcCCCCCce-eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC----CCeEEEe
Q 003279 730 NTSG-EYLASVS-DELVRVWSIGSGSKGE-CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT----ENKTLTL 802 (834)
Q Consensus 730 spdg-~~Lasgs-Dg~I~IwDl~s~~~~~-~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~----~~~~~~l 802 (834)
+|.. .+|++++ |++++|||++.-.... ++.....|...|.++.|||.+..|++.+.|..|+|||.. .-.+...
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT 410 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence 9965 5677777 9999999999754433 344555689999999999999889999999999999984 2333333
Q ss_pred ccCCC------CeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 803 SAHDK------LVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 803 ~~h~~------~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
..|.. ......|.|+..+|++|..-..|-|+|
T Consensus 411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred eeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 34432 234568999999999998888787775
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6e-19 Score=180.63 Aligned_cols=243 Identities=18% Similarity=0.263 Sum_probs=183.6
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc----eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 003279 588 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 663 (834)
Q Consensus 588 ~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~----~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 663 (834)
..+++|.+.|++++|+.||++|+|++.|++|+||+++.-.. +++.- -.-+..+.+.|.||-..+++++-....++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 35689999999999999999999999999999999985321 11111 12235788999999999999998888999
Q ss_pred EEECCCC---ceeeEee----------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEc
Q 003279 664 YWSINNG---SCAGVFK----------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 730 (834)
Q Consensus 664 lwDl~s~---~~i~~~~----------~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~s 730 (834)
+|.+... .....+. +.-.+..+-+...+.+|++++.|..|.+||++ |+.+..+......-+..+.|
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 9987532 2111111 12235566667778899999999999999999 88888877666677888999
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCCC-----CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-------
Q 003279 731 TSGEYLASVS-DELVRVWSIGSGS-----KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN------- 797 (834)
Q Consensus 731 pdg~~Lasgs-Dg~I~IwDl~s~~-----~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~------- 797 (834)
|+|++|++++ .--|+||.+--.+ ....+..+.+|...|..++|+++...+++.+.||+++|||++-.
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence 9999999998 7789999874332 22345678899999999999999999999999999999998532
Q ss_pred eEE-----EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 798 KTL-----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 798 ~~~-----~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
+.+ .+....+....++.+|.|..||.+. ...|++|
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~ 357 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVF 357 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEE
Confidence 111 1122234455899999999888653 2335443
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-20 Score=218.49 Aligned_cols=274 Identities=20% Similarity=0.301 Sum_probs=215.9
Q ss_pred EEEEcCCCC-EEEEEe----------CCCcEEEEeCCC--C----eEEEEeccCCCCeEEEEECCCCCE----EEEEeCC
Q 003279 557 SCHFSPDGK-LLATGG----------HDKKAVLWCTES--F----TVKSTLEEHTQWITDVRFSPSLSR----LATSSAD 615 (834)
Q Consensus 557 sl~fSpdg~-~Lasgs----------~Dg~I~IWd~~t--~----~~~~~l~~h~~~I~~l~fspdg~~----Latgs~D 615 (834)
.++|+|++. ++|+|. .+.++.||.+.. . +.+..+. -....++++|.+.+.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 478999886 566542 245666665432 2 2333332 3456789999987665 8899999
Q ss_pred CeEEEEecCCC-----CceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee---cCCCeeEEEE
Q 003279 616 RTVRVWDTENP-----DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRF 687 (834)
Q Consensus 616 g~I~IWDl~s~-----~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~---~~~~i~~l~~ 687 (834)
|.|.+||...- ...+..+..|.+.|..++|++...+++++|+.||.|.|||+++-+.-..+. ..+.|.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 99999998752 224567788999999999999999999999999999999998755444432 3567999999
Q ss_pred ecCCCEEE-EEEcCCeEEEEECCCCeEEEEEeCCCC--CEEEEEEcCCCC-EEEEEe--CC--eEEEEEcCCCCCceeEE
Q 003279 688 QPRLGRIL-AAAIENYISILDVETQVCRLKLQGHKN--QVHSVCWNTSGE-YLASVS--DE--LVRVWSIGSGSKGECIH 759 (834)
Q Consensus 688 sp~g~~ll-~~s~dg~I~iwDl~t~~~~~~l~~h~~--~I~sl~~spdg~-~Lasgs--Dg--~I~IwDl~s~~~~~~i~ 759 (834)
+..-.+|+ +++.+|.+.|||++..+.+..+..+.. .+..+.|+|++. .|++++ |+ .|.+||++.-. ..+.
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP~k 247 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SPLK 247 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--Cchh
Confidence 98655554 555678999999999988888876655 477899999864 444444 33 89999998764 5677
Q ss_pred EeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCC-EEEEEecCCcEEEe
Q 003279 760 ELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIW 833 (834)
Q Consensus 760 ~~~~~~~~I~svafspdg-~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~-~LaSgs~DG~I~IW 833 (834)
++.+|...|.++.|++.+ .++++++.|+.|.+|+.++++++ .+......+..+.|+|... .+++++-||.|-||
T Consensus 248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 788999999999999977 78889999999999999999999 6667788999999999776 88889999999987
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-19 Score=180.69 Aligned_cols=269 Identities=15% Similarity=0.246 Sum_probs=202.7
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
...++|.|+.|+.|.+|+...- ..-+.+.+|..+|+|++||+||+.|+|++.|..|.+||+
T Consensus 34 ~G~~lAvGc~nG~vvI~D~~T~-------------------~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl 94 (405)
T KOG1273|consen 34 WGDYLAVGCANGRVVIYDFDTF-------------------RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDL 94 (405)
T ss_pred CcceeeeeccCCcEEEEEcccc-------------------chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEec
Confidence 3478999999999999954322 234667899999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEecCCCCceeeeecc---CCCCeEEEEEccCCCcEEEEEe
Q 003279 582 ESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCD 657 (834)
Q Consensus 582 ~t~~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~s~~~~i~~~~~---h~~~V~sl~fspdg~~llasgs 657 (834)
..|.++..+. ...+|+.+.|+|.. +.++++-.+..-.+-++..+...+..... .+....+..|++.|+ ++++|.
T Consensus 95 ~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~-yIitGt 172 (405)
T KOG1273|consen 95 LKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK-YIITGT 172 (405)
T ss_pred cCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC-EEEEec
Confidence 9999998885 67899999999943 33333334444555666543321111111 111222335777776 556899
Q ss_pred CCCcEEEEECCCCceeeEeecC--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-------eE--EEEEeC--CCCCE
Q 003279 658 NNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVETQ-------VC--RLKLQG--HKNQV 724 (834)
Q Consensus 658 ~Dg~I~lwDl~s~~~i~~~~~~--~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~-------~~--~~~l~~--h~~~I 724 (834)
..|.+.++|..+-+++..++.. ..|..+.++..|..|++-+.|..|+.|+++.- ++ ..++.. ....-
T Consensus 173 sKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 173 SKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred CcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 9999999999999999888764 46889999999999999999999999998731 11 111111 12234
Q ss_pred EEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCC-CceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 725 HSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 725 ~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~-~~I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
.+++|+.+|.|+++++ -..++||.-..| ..++.+.+.. .....+.|+|-...|++. ..|.|++|...
T Consensus 253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~G---sLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSARAHALYIWEKSIG---SLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred hheeecCCccEEEeccccceeEEEEecCCc---ceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 5889999999999988 558999999888 6777777766 567889999999877777 77899999864
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-18 Score=191.57 Aligned_cols=134 Identities=22% Similarity=0.362 Sum_probs=106.4
Q ss_pred CCeEEEEECCCC-eE----EEEEeCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCCC----ceeEEEeecCCCce
Q 003279 700 ENYISILDVETQ-VC----RLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSK----GECIHELSCTGNKF 768 (834)
Q Consensus 700 dg~I~iwDl~t~-~~----~~~l~~h~~~I~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I 768 (834)
.|.|-||+++.. +. +-.+. ....|+.+.|+| |...|+++. ||.|++|.+..+.. ...-..+..|...|
T Consensus 602 gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI 680 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKI 680 (1012)
T ss_pred CceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceE
Confidence 455666666542 11 11111 345789999999 556777777 99999999987543 23455678899999
Q ss_pred EEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 769 HSCVFHPTF-PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 769 ~svafspdg-~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+++.|+|-. ..|++++.|-+|++||+.+.+.. .+.+|.+.|.+++|||||+.+|+.+.||+|++|+
T Consensus 681 ~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 681 TSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred EEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 999999954 57888899999999999998766 8899999999999999999999999999999985
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.1e-19 Score=188.22 Aligned_cols=219 Identities=17% Similarity=0.257 Sum_probs=185.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeec
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 634 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~ 634 (834)
-+|++......|+++|+..++|+|||+....+.+.+++|...|+++.++....|||+++..|.|.|..+.++.. ...+.
T Consensus 82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-tt~f~ 160 (673)
T KOG4378|consen 82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-TTTFT 160 (673)
T ss_pred HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-cccee
Confidence 44555555558999999999999999998778888999999999999999999999999999999999998664 34444
Q ss_pred cC-CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee--cCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCC
Q 003279 635 GH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRL-GRILAAAIENYISILDVET 710 (834)
Q Consensus 635 ~h-~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~--~~~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t 710 (834)
.. ...|.-+.|++..+.+|.+++++|.|.+||+....++..+. |..+...|||+|.. ..|++.+.|..|++||.+.
T Consensus 161 ~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s 240 (673)
T KOG4378|consen 161 IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS 240 (673)
T ss_pred cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence 33 45667899999999999999999999999999877766554 46678889999954 5677889999999999998
Q ss_pred CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003279 711 QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 777 (834)
Q Consensus 711 ~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg 777 (834)
......+. ...+...++|.++|.+|++|. .|.|+.||++... .++..+..|...|++++|-+.-
T Consensus 241 ~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 241 QASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCC--CCceEeeecccceeEEEeeecc
Confidence 77766665 456889999999999999999 9999999999764 6778888899999999998764
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.3e-19 Score=187.37 Aligned_cols=252 Identities=19% Similarity=0.267 Sum_probs=188.6
Q ss_pred cCCCceEEeccCCCCeEEeec--CCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcE
Q 003279 500 TDMDRFVDDGSLDDNVESFLS--PDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKA 576 (834)
Q Consensus 500 ~~~~~~l~~Gs~D~~v~~~~s--~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I 576 (834)
....+++|.|.+|..|.+|+. .+...+...+++...-.+...-+.-..-.+|++.|.+++|+.+- ..||+||.|.+|
T Consensus 189 ~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 189 GGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTV 268 (463)
T ss_pred CCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceE
Confidence 556789999999999999943 33333433333221111111111112234799999999998854 479999999999
Q ss_pred EEEeCCCCeEEEEeccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEE
Q 003279 577 VLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 655 (834)
Q Consensus 577 ~IWd~~t~~~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llas 655 (834)
++||+.++++..++..|.+.|.++.|+|. ..+|++|+.|++|.+.|.+.....-..+ ...+.|-.++|.|.....+++
T Consensus 269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFV 347 (463)
T ss_pred EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEE
Confidence 99999999999999999999999999994 6789999999999999999644322222 356789999999999999999
Q ss_pred EeCCCcEEEEECCCC-ceeeEee-cCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeE--EEEEeCCCCCEEEEEEc
Q 003279 656 CDNNSEIRYWSINNG-SCAGVFK-CQSGATQMRFQPRL-GRILAAAIENYISILDVETQVC--RLKLQGHKNQVHSVCWN 730 (834)
Q Consensus 656 gs~Dg~I~lwDl~s~-~~i~~~~-~~~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~~~--~~~l~~h~~~I~sl~~s 730 (834)
+..||+|+-+|++.. +++.++. |..+|.+++++... +.+++++.|+.|++|++..... +..-.-.-+...|.++.
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~ 427 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALD 427 (463)
T ss_pred ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccC
Confidence 999999999999975 8888877 46789999998854 4577788899999999875433 22111112346677788
Q ss_pred CCCCE-EEEEe-CCeEEEEEcCCC
Q 003279 731 TSGEY-LASVS-DELVRVWSIGSG 752 (834)
Q Consensus 731 pdg~~-Lasgs-Dg~I~IwDl~s~ 752 (834)
|+-.+ ++.|+ .+.++|||+.+.
T Consensus 428 ~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 428 PDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred CCcceEEEecCccceEEEeecccC
Confidence 87554 44455 668999999876
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=182.60 Aligned_cols=241 Identities=22% Similarity=0.339 Sum_probs=189.7
Q ss_pred ccCCCCeEEEEECCC--CCEEEEEeCCCeEEEEecCC---------------CCceeeeeccCCCCeEEEEEccCCCcEE
Q 003279 591 EEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTEN---------------PDYSLRTFTGHSTTVMSLDFHPSKEDLL 653 (834)
Q Consensus 591 ~~h~~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~s---------------~~~~i~~~~~h~~~V~sl~fspdg~~ll 653 (834)
..|.+.|+.+.-.+- ..+.++-+..|.|.|||+.. ...++.++.+|...=+.|+|+|-....+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 457778888877764 44566667789999999862 2235678889999999999999655567
Q ss_pred EEEeCCCcEEEEECCCCceee----EeecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCC---eEEEEEeCCCCCEE
Q 003279 654 CSCDNNSEIRYWSINNGSCAG----VFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQ---VCRLKLQGHKNQVH 725 (834)
Q Consensus 654 asgs~Dg~I~lwDl~s~~~i~----~~~~~~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~---~~~~~l~~h~~~I~ 725 (834)
++|+.-+.|++|...++.-.. ...+...|..++|+|.. +.|++|+.||+|+|||++.+ .++.+ +.|.+.|+
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVN 306 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVN 306 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCcee
Confidence 788888899999998865332 22256679999999964 56778888999999999987 34444 78999999
Q ss_pred EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeE----
Q 003279 726 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKT---- 799 (834)
Q Consensus 726 sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg-~~L~sgs~dg~I~Iwdl~~~~~---- 799 (834)
.|.|+.+-.+|++|+ ||+++|||++..+...++..+.-|..+|+++.|+|.. ..|++++.|..|.|||+.-..-
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 999999888999999 8999999999988778999999999999999999965 5677888899999999853221
Q ss_pred -------------EEeccC--CCCeEEEEEeCCC-CEEEEEecCCcEEEe
Q 003279 800 -------------LTLSAH--DKLVSSLAASTVN-GMVASASHDKCVKIW 833 (834)
Q Consensus 800 -------------~~l~~h--~~~V~~lafspdg-~~LaSgs~DG~I~IW 833 (834)
..+.-| ...|..+.|++.- .+|++.+.|| +.||
T Consensus 387 ~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 387 DQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred ccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 012234 4568889999864 4888888998 4454
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=191.41 Aligned_cols=243 Identities=19% Similarity=0.262 Sum_probs=199.4
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEE
Q 003279 586 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 665 (834)
Q Consensus 586 ~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lw 665 (834)
+-..+.+|++.|.||...|.|.+|++|+.||+|+||.+.++.+ ++++. ..+.|.||+|+|.+..-+++...+..+.|.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc-vr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC-VRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE-EEEEe-ecceeEEEEecCCCCceeEEEEecCceEEe
Confidence 3456789999999999999999999999999999999999875 55544 456899999999876544444434444444
Q ss_pred ECCCC--------------------------------------ceeeEeecCCCeeEEEEecCCCEEEEEEcC---CeEE
Q 003279 666 SINNG--------------------------------------SCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYIS 704 (834)
Q Consensus 666 Dl~s~--------------------------------------~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d---g~I~ 704 (834)
+..-| ....++.+...|..+.|+..|.||++...+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 43211 012345567789999999999999998875 4799
Q ss_pred EEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003279 705 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 784 (834)
Q Consensus 705 iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs 784 (834)
|+++.......-|....+.|.++.|+|...+|++++-..|+|||+... ..+..+......|..++++|.|..|++++
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq---elvKkL~tg~kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ---ELVKKLLTGSKWISSMSIHPNGDNLILGS 626 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH---HHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence 999988776666766678899999999999999999999999999876 56666666778899999999999999999
Q ss_pred cCCeEEEEECCCCeE--EEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 785 CYETLELWNMTENKT--LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 785 ~dg~I~Iwdl~~~~~--~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
.|+.+..||+.-+.. .++..|...|++++|++.-.++++|+.||++.||
T Consensus 627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 999999999876533 3788999999999999999999999999999886
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-18 Score=180.32 Aligned_cols=283 Identities=16% Similarity=0.218 Sum_probs=213.9
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC------CeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCeE
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------FTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTV 618 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t------~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I 618 (834)
+.+.+|.+.|.++.|+.++++||+|+.|..++||+++. .+++.... .|...|.|++|....++|++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 45679999999999999999999999999999999763 34554443 456899999999999999999999999
Q ss_pred EEEecCCCCceeeeeccCC---CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc----eeeEeecCCCeeEEEEecCC
Q 003279 619 RVWDTENPDYSLRTFTGHS---TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----CAGVFKCQSGATQMRFQPRL 691 (834)
Q Consensus 619 ~IWDl~s~~~~i~~~~~h~---~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~----~i~~~~~~~~i~~l~~sp~g 691 (834)
.+.|+++... +..+ .|. +.|+.+..+|. ..+|++.+.++.|.+||++... ++..-........+.|+|..
T Consensus 130 I~HDiEt~qs-i~V~-~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 130 IKHDIETKQS-IYVA-NENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred Eeeeccccee-eeee-cccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 9999998553 3333 343 58999999999 5577788999999999998654 22222335668899999976
Q ss_pred CE-EEEEEcCCeEEEEECCCCe-EEEEEeC------CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee
Q 003279 692 GR-ILAAAIENYISILDVETQV-CRLKLQG------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 762 (834)
Q Consensus 692 ~~-ll~~s~dg~I~iwDl~t~~-~~~~l~~------h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~ 762 (834)
.. |++.+..+.+.+||.+... .+....+ ....-.++.|+|+|..|.+-- ...-.+||+.+.. ..+..+.
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R--~~V~k~D 284 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR--CFVLKSD 284 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc--ceeEecc
Confidence 55 5556667899999998753 2222211 122235788999999888766 4566778887642 1222222
Q ss_pred c------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC------------------------CeEEEeccCCCCeEEE
Q 003279 763 C------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE------------------------NKTLTLSAHDKLVSSL 812 (834)
Q Consensus 763 ~------~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~------------------------~~~~~l~~h~~~V~~l 812 (834)
. ....+.+|+|..+.. +++|+.+-.|++|.+.. +....+.+|...+..+
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 1 123567788887766 88888888999998732 1233678999999999
Q ss_pred EEeCCCCEEEEEecCCcEEEeC
Q 003279 813 AASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 813 afspdg~~LaSgs~DG~I~IWd 834 (834)
.|+|...+|++.+....++||-
T Consensus 364 RF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 364 RFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred eecCCcceEeccchhhheeccc
Confidence 9999999999999999999993
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.9e-19 Score=176.38 Aligned_cols=285 Identities=19% Similarity=0.199 Sum_probs=203.1
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 544 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
++.++++|.+.|+|+.|-.+++ |.+|..-|.|++|++.+.+.+..++ .|...|+.+.-.|+ ..|.+-+.|..+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 4567889999999999998875 8899999999999999998888887 67888999998887 5788899999999999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccC-----CC---cEEEEEeCCC-cEEEEECCCCceeeEee-----cCCCeeEEEEe
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPS-----KE---DLLCSCDNNS-EIRYWSINNGSCAGVFK-----CQSGATQMRFQ 688 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspd-----g~---~llasgs~Dg-~I~lwDl~s~~~i~~~~-----~~~~i~~l~~s 688 (834)
+..... ...|.-.++++.|.+. .+ .+++.-+... .+.+-|......+.... ..+.+.|..+.
T Consensus 84 ia~s~~----i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 84 IAYSAF----ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred ccCcce----EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 986432 2234444555555532 11 1111111110 11112221111111111 12335555533
Q ss_pred c-CCC--EEEEEEcCCeEEEEECCCCeEE----------EEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC-
Q 003279 689 P-RLG--RILAAAIENYISILDVETQVCR----------LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS- 753 (834)
Q Consensus 689 p-~g~--~ll~~s~dg~I~iwDl~t~~~~----------~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~- 753 (834)
. ++. .+++|..+|.+.+||+.++..+ .....|..+|.++.|.+.-..=++++ +..+..|++....
T Consensus 160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG 239 (323)
T ss_pred ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence 2 222 3556667899999999997433 33446889999999987544444555 7788899887542
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 754 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 754 ~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
....-.++......+..+.+-||++.+++++.|+.|+||+.++..++ .+.-|...|.+++|+|+..++|+++.|+.|.+
T Consensus 240 slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISL 319 (323)
T KOG0322|consen 240 SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISL 319 (323)
T ss_pred cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEe
Confidence 11222334445667889999999999999999999999999999988 67789999999999999999999999999999
Q ss_pred eC
Q 003279 833 WK 834 (834)
Q Consensus 833 Wd 834 (834)
|+
T Consensus 320 Wk 321 (323)
T KOG0322|consen 320 WK 321 (323)
T ss_pred ee
Confidence 96
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.4e-17 Score=178.27 Aligned_cols=266 Identities=10% Similarity=0.183 Sum_probs=183.9
Q ss_pred EEEEeCCCcEEEEeCCC-Ce--EEEEeccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEecCC-CCceeeeeccCCCCeE
Q 003279 567 LATGGHDKKAVLWCTES-FT--VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTEN-PDYSLRTFTGHSTTVM 641 (834)
Q Consensus 567 Lasgs~Dg~I~IWd~~t-~~--~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~s-~~~~i~~~~~h~~~V~ 641 (834)
+++...++.|.+||+.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|+++. +...............
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 33446789999999964 33 445554 345678899999999987765 478999999973 2221111112334577
Q ss_pred EEEEccCCCcEEEEEeCCCcEEEEECCC-Cc---eeeEeecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEE-
Q 003279 642 SLDFHPSKEDLLCSCDNNSEIRYWSINN-GS---CAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRL- 715 (834)
Q Consensus 642 sl~fspdg~~llasgs~Dg~I~lwDl~s-~~---~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~- 715 (834)
.++|+|+++.++++...++.|.+|++.+ +. .+..+........++++|+++++++++. ++.|.+||+++...+.
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 8999999998877776789999999974 32 2233333345788899999999977775 5899999998632221
Q ss_pred ------EEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCceeEEEeecC------CCceEEEEEeCCCCEE
Q 003279 716 ------KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCT------GNKFHSCVFHPTFPSL 780 (834)
Q Consensus 716 ------~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~-~~~~~i~~~~~~------~~~I~svafspdg~~L 780 (834)
.+. .......+.|+|+|++++++. ++.|.+|++... ...+.+..+... ......+.++|+++++
T Consensus 164 ~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 164 QEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL 242 (330)
T ss_pred cCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence 111 233467899999999998877 789999999742 122334333321 1123358899999999
Q ss_pred EEEEc-CCeEEEEECCCCe-EEEeccC---CCCeEEEEEeCCCCEEEEEec-CCcEEEeC
Q 003279 781 LVIGC-YETLELWNMTENK-TLTLSAH---DKLVSSLAASTVNGMVASASH-DKCVKIWK 834 (834)
Q Consensus 781 ~sgs~-dg~I~Iwdl~~~~-~~~l~~h---~~~V~~lafspdg~~LaSgs~-DG~I~IWd 834 (834)
+++.. ++.|.+|++.... ...+..+ ......+.|+|||++|++++. +++|.||+
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 99865 6799999985432 2222222 235678999999999988775 89999984
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-17 Score=176.10 Aligned_cols=228 Identities=14% Similarity=0.261 Sum_probs=186.3
Q ss_pred EeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCC------ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc
Q 003279 589 TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 661 (834)
Q Consensus 589 ~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s~~------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 661 (834)
.+.+|+++|.+++|+| +...||+||.|.+|.||.+..+. .++..+.+|...|--+.|+|...++|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3568999999999999 56789999999999999987543 3467889999999999999999999999999999
Q ss_pred EEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC-CEEEEEEcCCCCEEEEEe
Q 003279 662 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~-~I~sl~~spdg~~Lasgs 740 (834)
|.+||+.+++.+..+.|..-|.++.|+.+|..|++++.|..|+|||.++++.+..-.+|.+ .-..+.|-.+|.++.+|.
T Consensus 156 v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGf 235 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGF 235 (472)
T ss_pred EEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecc
Confidence 9999999999999999999999999999999999999999999999999999988877766 344567778888666664
Q ss_pred ----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEE----EeccCCCCeEE
Q 003279 741 ----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTL----TLSAHDKLVSS 811 (834)
Q Consensus 741 ----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs-~dg~I~Iwdl~~~~~~----~l~~h~~~V~~ 811 (834)
+..+-+||-.+-+....+.++.. .+.|.--.|.++...|+.++ .|+.|+.|.+....+. .......+-..
T Consensus 236 sr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG 314 (472)
T KOG0303|consen 236 SRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRG 314 (472)
T ss_pred ccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccc
Confidence 66899999988766555555554 45677778899988877655 5789999999877643 12233344555
Q ss_pred EEEeCC
Q 003279 812 LAASTV 817 (834)
Q Consensus 812 lafspd 817 (834)
+.|-|.
T Consensus 315 ~g~mPK 320 (472)
T KOG0303|consen 315 MGFMPK 320 (472)
T ss_pred cccccc
Confidence 555554
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6e-16 Score=171.03 Aligned_cols=288 Identities=11% Similarity=0.122 Sum_probs=193.4
Q ss_pred EeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCC-CC
Q 003279 507 DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTE-SF 584 (834)
Q Consensus 507 ~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs-~Dg~I~IWd~~-t~ 584 (834)
.+...++.|.+|..... + .+..+..+. +.+....++++|++++|++++ .++.|.+|++. ++
T Consensus 6 ~~~~~~~~I~~~~~~~~--g--------------~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g 68 (330)
T PRK11028 6 IASPESQQIHVWNLNHE--G--------------ALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG 68 (330)
T ss_pred EEcCCCCCEEEEEECCC--C--------------ceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC
Confidence 33456788888855321 1 122334443 234577899999999987765 47899999986 33
Q ss_pred eE--EEEeccCCCCeEEEEECCCCCEEEEEeC-CCeEEEEecCCCCc---eeeeeccCCCCeEEEEEccCCCcEEEEEeC
Q 003279 585 TV--KSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 658 (834)
Q Consensus 585 ~~--~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~s~~~---~i~~~~~h~~~V~sl~fspdg~~llasgs~ 658 (834)
+. +.... ..+....++|+|++++|++++. ++.|.+|++++... .+..+. +.....+++++|+++.++++...
T Consensus 69 ~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~ 146 (330)
T PRK11028 69 ALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLK 146 (330)
T ss_pred ceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCC
Confidence 32 22222 3345678999999999888875 88999999975332 122222 33456788999999988888888
Q ss_pred CCcEEEEECCCCceee-------EeecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCC--C--eEEEEEeCC------
Q 003279 659 NSEIRYWSINNGSCAG-------VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET--Q--VCRLKLQGH------ 720 (834)
Q Consensus 659 Dg~I~lwDl~s~~~i~-------~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t--~--~~~~~l~~h------ 720 (834)
++.|.+||+.+...+. ..........+.|+|++++++++.. ++.|.+||++. + +.+..+..+
T Consensus 147 ~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~ 226 (330)
T PRK11028 147 EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSD 226 (330)
T ss_pred CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCC
Confidence 8999999998633221 1223456788999999999988887 89999999973 3 333333322
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC-CceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECC-
Q 003279 721 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS-KGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMT- 795 (834)
Q Consensus 721 ~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~-~~~~i~~~~~~~~~I~svafspdg~~L~sgs~-dg~I~Iwdl~- 795 (834)
......+.|+|++++|+++. ++.|.+|++.... ..+.+..+.. ......+.|+|+|++|+++.. +++|.+|+++
T Consensus 227 ~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 227 TRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 12334688999999999886 6799999996543 2223333332 234567899999999998876 7799999874
Q ss_pred -CCeEEE--eccCCCCeEEEEE
Q 003279 796 -ENKTLT--LSAHDKLVSSLAA 814 (834)
Q Consensus 796 -~~~~~~--l~~h~~~V~~laf 814 (834)
++.... .........|++|
T Consensus 306 ~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 306 ETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred CCCcEEEccccccCCCceEEEE
Confidence 344331 1122444555554
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-18 Score=188.23 Aligned_cols=254 Identities=19% Similarity=0.283 Sum_probs=198.7
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC--------CCeEEEEeccCCCCeEEEEECCCCCEEEEEe
Q 003279 542 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--------SFTVKSTLEEHTQWITDVRFSPSLSRLATSS 613 (834)
Q Consensus 542 ~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~--------t~~~~~~l~~h~~~I~~l~fspdg~~Latgs 613 (834)
+..-.++..|.+.|..+.|.+-...|++++.||+|.+|++. ..+++.+|.+|.++|.|+++.+++..+++|+
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence 33344888999999999999999999999999999999983 2467789999999999999999999999999
Q ss_pred CCCeEEEEecCC---------CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec---CCC
Q 003279 614 ADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSG 681 (834)
Q Consensus 614 ~Dg~I~IWDl~s---------~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~---~~~ 681 (834)
.||+|++|++.. .......+.||.+.|+.++++..... |++|+.||++++|+...... .+|.. ++-
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~-Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR-LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc-eeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence 999999996542 11234678899999999999998665 56999999999999887665 33322 233
Q ss_pred eeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEeC-------CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003279 682 ATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG-------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 752 (834)
Q Consensus 682 i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~~~~~~l~~-------h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 752 (834)
..++.+.... ...++...-+.-.++|.+....+..+.. ....+.-+.++|.+.+.+++. |+.|+++|..++
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 4455554433 2233333334444555555444443332 123467788999999888888 899999999998
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 753 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 753 ~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
..++....|...++++++.|+|.+|++++.|+.|++|.+....++
T Consensus 522 ---~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 522 ---KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred ---ccchheeeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence 788899999999999999999999999999999999999776655
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-18 Score=176.11 Aligned_cols=266 Identities=17% Similarity=0.301 Sum_probs=191.3
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECC--CCCEEEEEeCCCeEEEEecCCCCce-eeeeccCC-CCe
Q 003279 565 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYS-LRTFTGHS-TTV 640 (834)
Q Consensus 565 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IWDl~s~~~~-i~~~~~h~-~~V 640 (834)
..+|++...|.|++||..++..+..++++...++.++|.. ....+.+|+.||+|++||++..... ...+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688999999999999999999999999999999999987 4678999999999999999975542 33444554 456
Q ss_pred EEEEEccCCCcEEEEEe----CCCcEEEEECCCCce-eeEee--cCCCeeEEEEecC-CCEEEEEEcCCeEEEEECCCCe
Q 003279 641 MSLDFHPSKEDLLCSCD----NNSEIRYWSINNGSC-AGVFK--CQSGATQMRFQPR-LGRILAAAIENYISILDVETQV 712 (834)
Q Consensus 641 ~sl~fspdg~~llasgs----~Dg~I~lwDl~s~~~-i~~~~--~~~~i~~l~~sp~-g~~ll~~s~dg~I~iwDl~t~~ 712 (834)
.|++..-. ..++++|. .+-.|.+||++..+. +..+. |...|++++|+|. .+.|++|+.||.|.+||++...
T Consensus 121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 66666544 44776664 366899999998765 55443 5788999999995 4678889999999999998652
Q ss_pred ---EEEEEeCCCCCEEEEEEcCCC--CEEEEEeCCeEEEEEcCCCCCceeEEEeecC------------CCceEEEEEeC
Q 003279 713 ---CRLKLQGHKNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKGECIHELSCT------------GNKFHSCVFHP 775 (834)
Q Consensus 713 ---~~~~l~~h~~~I~sl~~spdg--~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~------------~~~I~svafsp 775 (834)
.+.....|...|.++.|..++ ++++....++..+|+++.+.. ...+... ...+..+....
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~---~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~ 276 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE---ETWLENPDVSADDLRKEDNCDYVINEHSPG 276 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh---hhcccCccchhhhHHhhhhhhheeecccCC
Confidence 222333477889999999887 544444599999999988742 1111111 01122222223
Q ss_pred CCCEEEEEEc-CCeEEEEEC---CCCeEE----Eec-cCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 776 TFPSLLVIGC-YETLELWNM---TENKTL----TLS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 776 dg~~L~sgs~-dg~I~Iwdl---~~~~~~----~l~-~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+....++++. .+...++-+ .++... .+. +|...|+++.|...+.++.||+.||.|.+|+
T Consensus 277 ~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 277 DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred CcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 4444555444 455544433 333322 333 4778899999998899999999999999995
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-19 Score=199.41 Aligned_cols=275 Identities=18% Similarity=0.288 Sum_probs=219.4
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
+.++.|.+|.+.|+|+.|...|.++++|+.|..|+||..++..++..+.+|.+.|++++.+.+..+++++|.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceee-----EeecCCCeeEEEEecCCCEEEEE
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKCQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~-----~~~~~~~i~~l~~sp~g~~ll~~ 697 (834)
+..+. ++..+.+|++.|++|+|+|-. +.+.||++++||.+-.-.+. .+.....+.++.|...+..++++
T Consensus 261 l~~~~-pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 261 LPDGA-PVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred cCCCc-hHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 99755 588999999999999999863 67789999999998211111 12234457777888888889999
Q ss_pred EcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003279 698 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 775 (834)
Q Consensus 698 s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp 775 (834)
+.|+.-..|...... .+...+.-+.++.+- .+.++.- +..+.+|++.++ ...+.+.+|...+..+.+||
T Consensus 335 s~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd~Hp 405 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLDVHP 405 (1113)
T ss_pred cCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccc---hhhhhhcccccceeeeeecC
Confidence 999887777654321 122222222222232 2333333 779999999988 67788889999999999999
Q ss_pred CCCEEE-EEEcCCeEEEEECCCCeEEE--eccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 776 TFPSLL-VIGCYETLELWNMTENKTLT--LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 776 dg~~L~-sgs~dg~I~Iwdl~~~~~~~--l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
-...++ .++.||.+.|||+-.+.++. ..+ .+.+...+||+||..++....-|.+.|.
T Consensus 406 fn~ri~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 406 FNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred CCcHhhhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEe
Confidence 887665 67889999999999888773 334 4567778999999988887777877764
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.1e-17 Score=185.39 Aligned_cols=281 Identities=16% Similarity=0.235 Sum_probs=209.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccC---CCCeEEEEECC--CCCEEEEEeCCCeEEEEecCC
Q 003279 551 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH---TQWITDVRFSP--SLSRLATSSADRTVRVWDTEN 625 (834)
Q Consensus 551 H~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h---~~~I~~l~fsp--dg~~Latgs~Dg~I~IWDl~s 625 (834)
....-..+.|+|-...++++...-.|+|||.+.++....|..+ ...|+.+++-. |..++++|+.||.|+||+-..
T Consensus 1063 n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 3344567889998889999987789999999999998777543 35688888876 567899999999999997543
Q ss_pred CC----ceeeeecc-------CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC--eeEEEEe-cCC
Q 003279 626 PD----YSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQ-PRL 691 (834)
Q Consensus 626 ~~----~~i~~~~~-------h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~--i~~l~~s-p~g 691 (834)
.. ..+..+.+ ..+.-.-++|.....+++++|+ -..|+|||.....++..+..... ++++.-+ ..|
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence 22 11222211 1122244678777776775554 78999999999888887775433 5554433 246
Q ss_pred CEEEEEEcCCeEEEEECCCC---eEEEEEeCCCCC--EEEEEEcCCCCE-EEEEe-CCeEEEEEcCCCCCceeEEEeecC
Q 003279 692 GRILAAAIENYISILDVETQ---VCRLKLQGHKNQ--VHSVCWNTSGEY-LASVS-DELVRVWSIGSGSKGECIHELSCT 764 (834)
Q Consensus 692 ~~ll~~s~dg~I~iwDl~t~---~~~~~l~~h~~~--I~sl~~spdg~~-Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~ 764 (834)
+.|++|..||.|++||.+.. ..+...+.|... |..+.+.+.|.- |++++ ||.|++||++.... .....+..|
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ETFLTIVAH 1300 (1387)
T ss_pred ceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cccceeeec
Confidence 88999999999999999865 346667778887 999999886654 77777 99999999998532 222222222
Q ss_pred ---CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEecc-------CCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 765 ---GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-------HDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 765 ---~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~-------h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++..+++..|+..+.|++|+. +.|+||++.......+.. ..+.+.|++|+|..-++|+|+.|.+|.||.
T Consensus 1301 ~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred cccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 235899999999998888888 899999998766553332 245689999999999999999999999983
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-16 Score=163.28 Aligned_cols=272 Identities=18% Similarity=0.252 Sum_probs=200.5
Q ss_pred eEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEec-CCCCCeEEEEEc-------CCCCEEEEEeCCCcE
Q 003279 505 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFS-------PDGKLLATGGHDKKA 576 (834)
Q Consensus 505 ~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~-gH~~~V~sl~fS-------pdg~~Lasgs~Dg~I 576 (834)
.+.+-+.|..+++|..+-+.-..+.- -...+.....++ -....|...+|- |+..++|+.+.|.-|
T Consensus 63 ciL~~sedn~l~~~nlP~dlys~~~~-------~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PI 135 (406)
T KOG2919|consen 63 CILSLSEDNCLNCWNLPFDLYSKKAD-------GPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPI 135 (406)
T ss_pred eEEeecccCeeeEEecChhhcccCCC-------CccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCce
Confidence 45566788889999655443221110 111111111121 123457888875 577899999999999
Q ss_pred EEEeCCCCeEEEEecc--CCCC---eEEEEECCCCCEEEEEeCCCeEEEEecCCCC-c-eeeeec-----cCCCCeEEEE
Q 003279 577 VLWCTESFTVKSTLEE--HTQW---ITDVRFSPSLSRLATSSADRTVRVWDTENPD-Y-SLRTFT-----GHSTTVMSLD 644 (834)
Q Consensus 577 ~IWd~~t~~~~~~l~~--h~~~---I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~-~-~i~~~~-----~h~~~V~sl~ 644 (834)
.+||.-+|+....+.. |-+. ..+++|+|||..|++| ....|++||+..+. . .+.... +..+-|.|++
T Consensus 136 h~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a 214 (406)
T KOG2919|consen 136 HLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFA 214 (406)
T ss_pred eeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeee
Confidence 9999999998877653 3333 4689999999999887 67799999994332 2 222222 2367899999
Q ss_pred EccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCC-eEEEEEeCCC
Q 003279 645 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQ-VCRLKLQGHK 721 (834)
Q Consensus 645 fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~-~~~~~l~~h~ 721 (834)
|+|.....++.++....+-||.-....++..+. +.++|+.++|.++|+.|++|+. +..|..||++.- .++..+..|.
T Consensus 215 ~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv 294 (406)
T KOG2919|consen 215 FSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHV 294 (406)
T ss_pred ccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhc
Confidence 999988899999999999999888887777665 4678999999999999999997 689999999864 6677777665
Q ss_pred C-CEEE--EEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003279 722 N-QVHS--VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 786 (834)
Q Consensus 722 ~-~I~s--l~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d 786 (834)
. .--. +...|++++|++|+ ||.|++||+.... ..+..+..+...++.++++|--+.+++++..
T Consensus 295 ~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g--n~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 295 GDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG--NEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cCccceEEEecCCCCceeeccCCCccEEEEecCCCC--CcccccccccccccceecCcccceeeeccCc
Confidence 5 2223 45578999999998 9999999998732 4566777788899999999998866666654
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.6e-18 Score=182.79 Aligned_cols=292 Identities=20% Similarity=0.310 Sum_probs=228.5
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-ccCCCCeEEEEECCC--CCEEEEEeCCCeE
Q 003279 542 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPS--LSRLATSSADRTV 618 (834)
Q Consensus 542 ~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l-~~h~~~I~~l~fspd--g~~Latgs~Dg~I 618 (834)
+.....|..|.+.|..|.|+..|..|++|+.|..|.+||...++.+..+ .+|...|.-..|-|. ...|++++.||.|
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 3445678899999999999999999999999999999999998887666 579999998889883 5679999999999
Q ss_pred EEEecCCCCce--eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec----CC---CeeEEEEec
Q 003279 619 RVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QS---GATQMRFQP 689 (834)
Q Consensus 619 ~IWDl~s~~~~--i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~----~~---~i~~l~~sp 689 (834)
++=.+...++. ...+..|.+.|..++..|+..+-|.+|+.|+.+.-+|++.+.....+.+ .. ....++..|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 99887654443 3456679999999999999999999999999999999998876655543 22 467788888
Q ss_pred CCC-EEEEEEcCCeEEEEECCCCeE------EEEEe------CCCCCEEEEEEcCCC-CEEEEEeCCeEEEEEcCCCCC-
Q 003279 690 RLG-RILAAAIENYISILDVETQVC------RLKLQ------GHKNQVHSVCWNTSG-EYLASVSDELVRVWSIGSGSK- 754 (834)
Q Consensus 690 ~g~-~ll~~s~dg~I~iwDl~t~~~------~~~l~------~h~~~I~sl~~spdg-~~LasgsDg~I~IwDl~s~~~- 754 (834)
... .+++++.|-.+++||.+.-.. +..+. ...-.|+|++|+.++ .+|++-.|..|++|.-..+.-
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 665 688889999999999875321 22222 223478999999655 566666688999995433211
Q ss_pred -c-------eeEE-EeecCCC--ceEEEE-EeCCCCEEEEEEcCCeEEEEECCCCeEEE-eccCCCCeEEEEEeCCCCEE
Q 003279 755 -G-------ECIH-ELSCTGN--KFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMV 821 (834)
Q Consensus 755 -~-------~~i~-~~~~~~~--~I~sva-fspdg~~L~sgs~dg~I~Iwdl~~~~~~~-l~~h~~~V~~lafspdg~~L 821 (834)
. ..+. .+++|.+ .|..+- |-|...|+++|+.-|.|.||+-++++++. +.+-...|+||.-+|--.+|
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvL 451 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVL 451 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchh
Confidence 0 1112 2555543 355554 56788999999999999999999999884 34444589999999999999
Q ss_pred EEEecCCcEEEe
Q 003279 822 ASASHDKCVKIW 833 (834)
Q Consensus 822 aSgs~DG~I~IW 833 (834)
|+++-|..|+||
T Consensus 452 AsSGid~DVKIW 463 (559)
T KOG1334|consen 452 ASSGIDHDVKIW 463 (559)
T ss_pred hccCCccceeee
Confidence 999999999999
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.1e-16 Score=158.41 Aligned_cols=250 Identities=20% Similarity=0.353 Sum_probs=186.5
Q ss_pred cccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC--CCCEEEEEeCCCc
Q 003279 498 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKK 575 (834)
Q Consensus 498 ~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSp--dg~~Lasgs~Dg~ 575 (834)
.++...+.+++++.|..+++|...++ ..++......+.|.+.|..|.|.+ -|..+|+++.|++
T Consensus 20 s~D~~GRRmAtCSsDq~vkI~d~~~~---------------s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 20 SFDFYGRRMATCSSDQTVKIWDSTSD---------------SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred eecccCceeeeccCCCcEEEEeccCC---------------CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence 34556689999999999999986433 224555667789999999999976 5889999999999
Q ss_pred EEEEeCC---------CCeEEEEeccCCCCeEEEEECCC--CCEEEEEeCCCeEEEEecCCCCce------------eee
Q 003279 576 AVLWCTE---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYS------------LRT 632 (834)
Q Consensus 576 I~IWd~~---------t~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~s~~~~------------i~~ 632 (834)
|.||.-. ......++......|++|.|.|. |-.||+++.||+||||+.-..... +..
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p 164 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP 164 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCC
Confidence 9999631 22344667778889999999994 778999999999999987653210 111
Q ss_pred eccCCCCeEEEEEccCC--CcEEEEEeCC-----CcEEEEECCCC--ceee--Ee-ecCCCeeEEEEecCC----CEEEE
Q 003279 633 FTGHSTTVMSLDFHPSK--EDLLCSCDNN-----SEIRYWSINNG--SCAG--VF-KCQSGATQMRFQPRL----GRILA 696 (834)
Q Consensus 633 ~~~h~~~V~sl~fspdg--~~llasgs~D-----g~I~lwDl~s~--~~i~--~~-~~~~~i~~l~~sp~g----~~ll~ 696 (834)
...+.....|+.|+|.. ..+|+.|+.+ +.++||....+ +... .+ .+..+|+.++|.|.- ..|++
T Consensus 165 p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 165 PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE
Confidence 22466778899998742 3467677654 47888876543 2222 22 346789999999963 34778
Q ss_pred EEcCCeEEEEECCCC--------------------eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc
Q 003279 697 AAIENYISILDVETQ--------------------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 755 (834)
Q Consensus 697 ~s~dg~I~iwDl~t~--------------------~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~ 755 (834)
++.|| |+||.++.. +.+..+.+|.+.|..+.|+-.|..|++.+ ||+|++|...-....
T Consensus 245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~ 323 (361)
T KOG2445|consen 245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLW 323 (361)
T ss_pred eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhh
Confidence 88888 999998731 23455778999999999999999999988 999999987665555
Q ss_pred eeEEEeec
Q 003279 756 ECIHELSC 763 (834)
Q Consensus 756 ~~i~~~~~ 763 (834)
+|+..+..
T Consensus 324 kC~sv~~~ 331 (361)
T KOG2445|consen 324 KCTSVLKA 331 (361)
T ss_pred eeeeEEec
Confidence 66665554
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.9e-17 Score=178.02 Aligned_cols=255 Identities=18% Similarity=0.194 Sum_probs=193.1
Q ss_pred CCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003279 496 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 575 (834)
Q Consensus 496 ~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~ 575 (834)
.-.+......+++++.|+.+++|..... ...+...+..+.+|++|.++|.|+++.+++..+++|+.||+
T Consensus 299 ~l~~~~sep~lit~sed~~lk~WnLqk~-----------~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 299 ALAFHPSEPVLITASEDGTLKLWNLQKA-----------KKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred hhhcCCCCCeEEEeccccchhhhhhccc-----------CCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 3445667788999999999999976331 12345567889999999999999999999999999999999
Q ss_pred EEEEeCCC----------CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEE
Q 003279 576 AVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 645 (834)
Q Consensus 576 I~IWd~~t----------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~f 645 (834)
|+.|++.. ......+.||++.|+.++++.....|++|+.||+|++|+......+........+.-.++++
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDR 447 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEee
Confidence 99995431 12335678999999999999999999999999999999988655422222222344556666
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCCCceeeEeec--------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 003279 646 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 717 (834)
Q Consensus 646 spdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~--------~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l 717 (834)
......+.++...-+.--+++++....+..+.. ...+..+.++|.....+++..++.|+++|..++..+...
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~ 527 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM 527 (577)
T ss_pred ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe
Confidence 544322333333333334444454444444432 134677889999999999999999999999999999999
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC
Q 003279 718 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 764 (834)
Q Consensus 718 ~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~ 764 (834)
..|...++++++.|+|-+|.+++ |+.|++|.+... .++.....|
T Consensus 528 ~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k---~~~~es~~~ 572 (577)
T KOG0642|consen 528 VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK---TCVLESTAH 572 (577)
T ss_pred eeccceecceeecCCCceEEeecCCceeehhhccch---heeeccccc
Confidence 99999999999999999999999 999999998765 555554443
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.5e-16 Score=158.95 Aligned_cols=241 Identities=19% Similarity=0.326 Sum_probs=180.7
Q ss_pred cCCCCCeEEEEEcCCCC-----EEEEEeCCCcEEEEeCCC--CeEE--EEe-----ccCCCCeEEEEECC-CCCEEEEEe
Q 003279 549 PASTSKVESCHFSPDGK-----LLATGGHDKKAVLWCTES--FTVK--STL-----EEHTQWITDVRFSP-SLSRLATSS 613 (834)
Q Consensus 549 ~gH~~~V~sl~fSpdg~-----~Lasgs~Dg~I~IWd~~t--~~~~--~~l-----~~h~~~I~~l~fsp-dg~~Latgs 613 (834)
..|.-+++.+-|.|+.+ +|||++ ..+++|.+.. .+.. ..+ ..+..+++++.|+. +-++|.++|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 36888999999999863 566665 4899998873 2211 111 35678899999987 678999999
Q ss_pred CCCeEEEEecCCCC--ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec----CCCeeEEEE
Q 003279 614 ADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQMRF 687 (834)
Q Consensus 614 ~Dg~I~IWDl~s~~--~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~----~~~i~~l~~ 687 (834)
-|-++.|||++++. .....+..|...|..|+|...+..+|++++.||.|++||++..+-...+.. ..+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 99999999999852 245677889999999999999899999999999999999997654333322 345777888
Q ss_pred ecCC-CEEEEEEcC-CeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCC---ceeEE
Q 003279 688 QPRL-GRILAAAIE-NYISILDVETQ-VCRLKLQGHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSK---GECIH 759 (834)
Q Consensus 688 sp~g-~~ll~~s~d-g~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spd-g~~Lasgs-Dg~I~IwDl~s~~~---~~~i~ 759 (834)
++.. +++++...| ..|.|.|++.. .++..+.+|.+.|+.|+|.|. ...|++++ |..+.|||+..... ..++.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 8754 445555554 68999999975 788899999999999999995 46788877 77999999976422 12222
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003279 760 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 792 (834)
Q Consensus 760 ~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iw 792 (834)
.+. ....|+.+.|++...--+.++.++++.+.
T Consensus 331 ay~-a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 331 AYT-AGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred hhh-ccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 333 57789999999765444444444555443
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.3e-17 Score=166.83 Aligned_cols=242 Identities=19% Similarity=0.280 Sum_probs=183.4
Q ss_pred CCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecC
Q 003279 550 ASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 550 gH~~~V~sl~fSpd----g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~ 624 (834)
.|......|+|+-| ..+||.|+.-|.|+|.|+.++++...+.+|...|+.|.|.|+ ..+|+++|.|..|++|++.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 36777888888764 347999999999999999999999999999999999999996 4689999999999999999
Q ss_pred CCCceeee---eccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee------------------------
Q 003279 625 NPDYSLRT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------------------------ 677 (834)
Q Consensus 625 s~~~~i~~---~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~------------------------ 677 (834)
+..+ +.. +.+|.+.|.+++|++++. .+++|+.|..|++|++...+....+.
T Consensus 167 ~~~C-v~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 167 TDVC-VAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred CCeE-EEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 8654 444 457999999999999988 66799999999999998432111110
Q ss_pred -----cCCCeeEEEEecCCCEEEEEEcCCeEEEEECC-CCe-------------EEEEEeCCCCCEEE--EEEcCCCCEE
Q 003279 678 -----CQSGATQMRFQPRLGRILAAAIENYISILDVE-TQV-------------CRLKLQGHKNQVHS--VCWNTSGEYL 736 (834)
Q Consensus 678 -----~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~-t~~-------------~~~~l~~h~~~I~s--l~~spdg~~L 736 (834)
|...|.|+.|. |+++++-+.++.|..|... -.+ ...++.-....|.- .+|++-.+.|
T Consensus 245 st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 01112333332 4678888889999999772 111 12223323334444 4567778999
Q ss_pred EEEe-CCeEEEEEcCCCCCceeE-EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 737 ASVS-DELVRVWSIGSGSKGECI-HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 737 asgs-Dg~I~IwDl~s~~~~~~i-~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
|.|. .|.|++||++..+...+. .........|...+|+.|+..|+..+.|+.|.-||.-
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999 899999999987653222 2223345678999999999999999999999999853
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-16 Score=166.11 Aligned_cols=206 Identities=19% Similarity=0.304 Sum_probs=165.9
Q ss_pred EEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCC-------eEEEEeccCCCCeEEEEECCC-CCEEEEEeC
Q 003279 544 EFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPS-LSRLATSSA 614 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~IWd~~t~-------~~~~~l~~h~~~I~~l~fspd-g~~Latgs~ 614 (834)
.+-.+.||+++|..++|+| +...||+|++|.+|.||.+... +++..+.+|...|--+.|+|. .+.|++++.
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC
Confidence 3456789999999999999 5568999999999999988643 456788999999999999995 568999999
Q ss_pred CCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCC--CeeEEEEecCCC
Q 003279 615 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLG 692 (834)
Q Consensus 615 Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~--~i~~l~~sp~g~ 692 (834)
|.+|.+||+.++.. +.++. |.+-|++++|+.+|. ++++.+.|+.|+|||.++++.+..-..+. ....+.|..++.
T Consensus 153 Dn~v~iWnv~tgea-li~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~ 229 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEA-LITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK 229 (472)
T ss_pred CceEEEEeccCCce-eeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc
Confidence 99999999999875 34444 999999999999987 77799999999999999999988775433 355677888888
Q ss_pred EEEEEEc---CCeEEEEECCCCe---EEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC
Q 003279 693 RILAAAI---ENYISILDVETQV---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS 753 (834)
Q Consensus 693 ~ll~~s~---dg~I~iwDl~t~~---~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~ 753 (834)
.+-+|.. +..+-+||..+-. ...++. ..+.|.---|++|..+++.++ |+.|+.|.+....
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 4444432 5789999977643 233333 455677778899999888777 9999999998763
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-15 Score=174.09 Aligned_cols=258 Identities=18% Similarity=0.238 Sum_probs=189.1
Q ss_pred CcEEEEeCCCC-eEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCCce-----eeeeccCCCCeEEEEEc
Q 003279 574 KKAVLWCTESF-TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYS-----LRTFTGHSTTVMSLDFH 646 (834)
Q Consensus 574 g~I~IWd~~t~-~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s~~~~-----i~~~~~h~~~V~sl~fs 646 (834)
+.+.||+++.. .+...+ .-...|.|++|+| +..+|+.|+.+|.|.+||+...... -.....|..+|+.+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 47999999876 333444 4567899999999 5678888999999999999876542 12334688999999997
Q ss_pred cCCCc-EEEEEeCCCcEEEEECCCCcee------eEe-------ecCCCeeEEEEecC-CCEEEEEEcCCeEEEEECCCC
Q 003279 647 PSKED-LLCSCDNNSEIRYWSINNGSCA------GVF-------KCQSGATQMRFQPR-LGRILAAAIENYISILDVETQ 711 (834)
Q Consensus 647 pdg~~-llasgs~Dg~I~lwDl~s~~~i------~~~-------~~~~~i~~l~~sp~-g~~ll~~s~dg~I~iwDl~t~ 711 (834)
.+... =|++++.||.|..|+++.-... ... .....++++.|.+. -..|++|+.+|.|..-+....
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 65433 2557888999999998754321 111 12345788999884 456888888898887443322
Q ss_pred ---e-----EEEEEeCCCCCEEEEEEcCCCCEE-EEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE-
Q 003279 712 ---V-----CRLKLQGHKNQVHSVCWNTSGEYL-ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL- 781 (834)
Q Consensus 712 ---~-----~~~~l~~h~~~I~sl~~spdg~~L-asgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~- 781 (834)
. ....+..|.++|+++.++|-+..+ .+++|.+|+||...... .++..+..+...+++++|||....++
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~--~Pl~~~~~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA--SPLLSLDSSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC--CcchhhhhccceeeeeEEcCcCceEEE
Confidence 1 123455688999999999976544 44559999999987321 56666777777899999999986554
Q ss_pred EEEcCCeEEEEECCCCeE--E-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 782 VIGCYETLELWNMTENKT--L-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 782 sgs~dg~I~Iwdl~~~~~--~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++..+|.|.|||+..... + ....+....+.+.|++.|++|++|...|.|++|+
T Consensus 459 ~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred EEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 556699999999965432 2 4444567778889999999999999999999985
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.6e-16 Score=179.75 Aligned_cols=292 Identities=18% Similarity=0.226 Sum_probs=208.5
Q ss_pred eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCC-------CeEEEEeccCCCCeEEEEECCCCCEEEEEeC
Q 003279 543 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSA 614 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~IWd~~t-------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~ 614 (834)
..+..+..|...|..++.+++. .++++|+.||+|++|+... .+...++.-....+.++.+.+.+..+|+++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 4577888999999999988755 8999999999999999753 2333444446778999999999999999999
Q ss_pred CCeEEEEecCCCCce------eeeeccC-CCCeEE-EEEccCCC-cEEEEEeCCCcEEEEECCCCceeeEeec---CCCe
Q 003279 615 DRTVRVWDTENPDYS------LRTFTGH-STTVMS-LDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGA 682 (834)
Q Consensus 615 Dg~I~IWDl~s~~~~------i~~~~~h-~~~V~s-l~fspdg~-~llasgs~Dg~I~lwDl~s~~~i~~~~~---~~~i 682 (834)
||.|++.+++..... .+....+ .+.+.+ -+|..... .+++.+...+.|..||+++......++. ++-|
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 999999999852111 1111112 233333 34443333 3777788889999999998877766654 5779
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC-CCCCEEEEEEcCC---CCEEEEEe---CCeEEEEEcCCCCCc
Q 003279 683 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HKNQVHSVCWNTS---GEYLASVS---DELVRVWSIGSGSKG 755 (834)
Q Consensus 683 ~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~-h~~~I~sl~~spd---g~~Lasgs---Dg~I~IwDl~s~~~~ 755 (834)
++++.+|.+.+++.|+..|.+.+||++-+.++..+.. +..+|..++.+|- ....++++ .+.|.+|++.++...
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence 9999999999999999999999999999888877652 4567887777663 34555444 568999999988321
Q ss_pred eeEEEe----------e------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-------------------
Q 003279 756 ECIHEL----------S------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL------------------- 800 (834)
Q Consensus 756 ~~i~~~----------~------~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~------------------- 800 (834)
..+..- . .+.-....+++...+.++++|+.|..|+.||....+..
T Consensus 1279 ~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~ 1358 (1431)
T KOG1240|consen 1279 TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD 1358 (1431)
T ss_pred EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhcc
Confidence 111111 0 01112234455556678999999999999997432110
Q ss_pred --------------------------------------EeccCCCCeEEEEEeCCC-CEEEEEecCCcEEEeC
Q 003279 801 --------------------------------------TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 834 (834)
Q Consensus 801 --------------------------------------~l~~h~~~V~~lafspdg-~~LaSgs~DG~I~IWd 834 (834)
.-..|...|+++++.... .+|++++.||.|+||+
T Consensus 1359 ~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1359 LSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 011255667777766544 4899999999999996
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.8e-16 Score=158.48 Aligned_cols=270 Identities=20% Similarity=0.280 Sum_probs=190.0
Q ss_pred EEEecCCCCCeEEEEEcC-CCCEEEEEeCC-------CcEEEEeCCC---------CeEEEEec-cCCCCeEEEEECCCC
Q 003279 545 FQLIPASTSKVESCHFSP-DGKLLATGGHD-------KKAVLWCTES---------FTVKSTLE-EHTQWITDVRFSPSL 606 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSp-dg~~Lasgs~D-------g~I~IWd~~t---------~~~~~~l~-~h~~~I~~l~fspdg 606 (834)
-.+|..|.+.|+.++-+| |.++|+++..+ ..+.||.+.. .+++..+. .+-+.|.|+.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 456778999999999999 55667766442 3578998763 23344443 455689999999999
Q ss_pred CEEEEEeCCCeEEEEecCCCCceeeee-----ccCCCCeEEEEEcc--CCCcEEEEEeCCCcEEEEECCCCceeeEeec-
Q 003279 607 SRLATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKC- 678 (834)
Q Consensus 607 ~~Latgs~Dg~I~IWDl~s~~~~i~~~-----~~h~~~V~sl~fsp--dg~~llasgs~Dg~I~lwDl~s~~~i~~~~~- 678 (834)
..|++-. |..|.+|++......+..+ ..+....++-+|+| ++. .+++. .|+++..||+++.++...+..
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn-qv~tt-~d~tl~~~D~RT~~~~~sI~dA 212 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN-QVATT-SDSTLQFWDLRTMKKNNSIEDA 212 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc-eEEEe-CCCcEEEEEccchhhhcchhhh
Confidence 9988875 8899999998765422222 23566788889998 444 44343 489999999999888777763
Q ss_pred -CCCeeEEEEecCCCE-EEEEEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCC
Q 003279 679 -QSGATQMRFQPRLGR-ILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGS 753 (834)
Q Consensus 679 -~~~i~~l~~sp~g~~-ll~~s~dg~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~ 753 (834)
...+..+.|+|+..+ |++++.||.|+|||.+.. .++.++.+|..+|.++.|+|.. .+|.+++ |..|.+|-..+-.
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccc
Confidence 456999999998765 556667899999999864 7888999999999999999964 4556666 9999999765532
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCC-EEEEEecCCcEEE
Q 003279 754 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKI 832 (834)
Q Consensus 754 ~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~-~LaSgs~DG~I~I 832 (834)
... .+.|..+....-.......++ -+..|.+.++..|+..|.+++|+.-.. ++|+-+.||.|.|
T Consensus 293 SE~-------------qi~~~~dese~e~~dseer~k--pL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 293 SEQ-------------QIEFEDDESESEDEDSEERVK--PLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred ccc-------------ccccccccccCcchhhHHhcc--cccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 111 111111110000000011222 344555567789999999999997665 6788899999876
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-15 Score=147.73 Aligned_cols=268 Identities=15% Similarity=0.166 Sum_probs=192.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCC----------CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEec
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 623 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t----------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 623 (834)
.|.+-+|+|.+++|+.|..+|.|.++.+.+ ...+....+|.++|+.++|. ..+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 367778999999999999999999998753 23344557999999999998 34666664 599999987
Q ss_pred CCCCcee-------eeeccC-----CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC-eeEEEEecC
Q 003279 624 ENPDYSL-------RTFTGH-----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPR 690 (834)
Q Consensus 624 ~s~~~~i-------~~~~~h-----~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~-i~~l~~sp~ 690 (834)
....... .....| --.|+++...|..+.+|.+| .|+.++.||+++|+..++++.+.. +.++.--..
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 6432210 111112 24688999999877777555 699999999999999999997554 777777666
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEeCC----------CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEE
Q 003279 691 LGRILAAAIENYISILDVETQVCRLKLQGH----------KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE 760 (834)
Q Consensus 691 g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h----------~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~ 760 (834)
...+++|++||++++||.++++++..+... ..+|-+++. +..+|++|....+.+|.+++. ++...
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrss---e~t~v 242 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSS---ESTCV 242 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCC---CceEE
Confidence 788999999999999999999998877532 124555554 567899888889999999987 44444
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCC-CCEEEEEecCCcEEEe
Q 003279 761 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV-NGMVASASHDKCVKIW 833 (834)
Q Consensus 761 ~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspd-g~~LaSgs~DG~I~IW 833 (834)
+.. ...+..+.|..+ .+++++..+.|.-|.+..--...........++..|+-. -++|-.++....+.|+
T Consensus 243 fpi-pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 243 FPI-PARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred Eec-ccceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 432 456777888766 577777777898888765433333333333444444322 3456666677777765
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.1e-16 Score=161.07 Aligned_cols=275 Identities=15% Similarity=0.176 Sum_probs=198.8
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEE
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLW 579 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSp--dg~~Lasgs~Dg~I~IW 579 (834)
.+..++++...+.|++|.... +. .+..+++|...+..+.|.. ....+.+|+.||+|++|
T Consensus 39 ~e~~vav~lSngsv~lyd~~t----------------g~---~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~w 99 (376)
T KOG1188|consen 39 FETAVAVSLSNGSVRLYDKGT----------------GQ---LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLW 99 (376)
T ss_pred cceeEEEEecCCeEEEEeccc----------------hh---hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEE
Confidence 346788888889999884422 22 2445567777777888876 45679999999999999
Q ss_pred eCCCCeEEEEe--ccCC-CCeEEEEECCCCCEEEEEeC----CCeEEEEecCCCCcee-eeeccCCCCeEEEEEccCCCc
Q 003279 580 CTESFTVKSTL--EEHT-QWITDVRFSPSLSRLATSSA----DRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKED 651 (834)
Q Consensus 580 d~~t~~~~~~l--~~h~-~~I~~l~fspdg~~Latgs~----Dg~I~IWDl~s~~~~i-~~~~~h~~~V~sl~fspdg~~ 651 (834)
|+++......+ ..+. .+..|++...++..+++|.. |-.|.+||++.....+ .....|.+.|++++|+|....
T Consensus 100 D~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pn 179 (376)
T KOG1188|consen 100 DIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPN 179 (376)
T ss_pred EeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCC
Confidence 99986655443 4555 46677777767888888864 6789999999877644 345679999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCC----ceeeEeecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEeCCC-----
Q 003279 652 LLCSCDNNSEIRYWSINNG----SCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHK----- 721 (834)
Q Consensus 652 llasgs~Dg~I~lwDl~s~----~~i~~~~~~~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~----- 721 (834)
+|++|+.||.|.+||++.. ..+.++.+...|.++.|..++ +.|.+.+......+|+++.+.++..+....
T Consensus 180 lLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d 259 (376)
T KOG1188|consen 180 LLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADD 259 (376)
T ss_pred eEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhh
Confidence 9999999999999999754 345667777889999998875 468899999999999999887665544221
Q ss_pred -------CCEEEEEEcCCCCEEEE-Ee-CCeEEEEEc---CCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCCe
Q 003279 722 -------NQVHSVCWNTSGEYLAS-VS-DELVRVWSI---GSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYET 788 (834)
Q Consensus 722 -------~~I~sl~~spdg~~Las-gs-Dg~I~IwDl---~s~~~~~~i~~~~~-~~~~I~svafspdg~~L~sgs~dg~ 788 (834)
..+.......+...++. ++ -++..++-+ .++.....+..+.+ |...|.++.|...+.++++|+.||.
T Consensus 260 ~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~ 339 (376)
T KOG1188|consen 260 LRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGL 339 (376)
T ss_pred HHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCce
Confidence 01111111123333333 33 344444433 34444445555555 5667888999999999999999999
Q ss_pred EEEEECC
Q 003279 789 LELWNMT 795 (834)
Q Consensus 789 I~Iwdl~ 795 (834)
+.+|...
T Consensus 340 l~~Wk~~ 346 (376)
T KOG1188|consen 340 LQAWKVE 346 (376)
T ss_pred EEEEecC
Confidence 9999853
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-15 Score=174.27 Aligned_cols=233 Identities=16% Similarity=0.108 Sum_probs=165.8
Q ss_pred CCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEecCCCCc-eeeeeccCCCCeEEEEEccC
Q 003279 573 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPS 648 (834)
Q Consensus 573 Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~s~~~-~i~~~~~h~~~V~sl~fspd 648 (834)
+..|+|||.+... ...+..|...|.+++|+|||+.|+.++.+ ..|++||+.++.. .+..+.+ ...+++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCC
Confidence 4689999987654 45677788899999999999999988754 3699999987653 2222333 3457899999
Q ss_pred CCcEEEEEeCCCcEE--EEECCCCceeeEeecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCC-eEEEEEeCCCCCE
Q 003279 649 KEDLLCSCDNNSEIR--YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQ-VCRLKLQGHKNQV 724 (834)
Q Consensus 649 g~~llasgs~Dg~I~--lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s-~dg~I~iwDl~t~-~~~~~l~~h~~~I 724 (834)
|+.++++.+.+|.+. +||+.++...........+....|+|+++.|++++ .++...||++... .....+ .+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~-- 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG-- 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--
Confidence 998887777788654 55777666555444455678899999999887766 4677777766432 122222 3433
Q ss_pred EEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC---CCCeEEE
Q 003279 725 HSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM---TENKTLT 801 (834)
Q Consensus 725 ~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl---~~~~~~~ 801 (834)
.++.|+|||++|+..+...+.+||+.++.. ...... .....+.|+|+|++|++++.++.+.+|++ .......
T Consensus 336 ~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~---~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 336 YSAQISADGKTLVMINGDNVVKQDLTSGST---EVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred CCccCCCCCCEEEEEcCCCEEEEECCCCCe---EEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence 467899999999888745577799988732 111111 13356789999999999999887766654 4444456
Q ss_pred eccCCCCeEEEEEeCC
Q 003279 802 LSAHDKLVSSLAASTV 817 (834)
Q Consensus 802 l~~h~~~V~~lafspd 817 (834)
+..|.+.+..++|+|-
T Consensus 411 l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 411 LPGSDGQVKFPAWSPY 426 (429)
T ss_pred ccCCCCCCCCcccCCC
Confidence 7788888999999984
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.1e-15 Score=169.93 Aligned_cols=282 Identities=17% Similarity=0.288 Sum_probs=211.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC----CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC
Q 003279 549 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 549 ~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t----~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 624 (834)
..|.-.++|.++||+++++|+|..||.|.+|.--. ......+.=|...|.+++|+++|.+|++|+..|.+.+|.+.
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 35777799999999999999999999999995322 12335667799999999999999999999999999999999
Q ss_pred CCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec------------CCCeeEEEEecCCC
Q 003279 625 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------------QSGATQMRFQPRLG 692 (834)
Q Consensus 625 s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~------------~~~i~~l~~sp~g~ 692 (834)
+++ ...+..-.++|..+.++||++.+. .+..|..|.+....+......+.+ .+-.+.++++|.-+
T Consensus 282 T~~--kqfLPRLgs~I~~i~vS~ds~~~s-l~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 282 TGK--KQFLPRLGSPILHIVVSPDSDLYS-LVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred CCC--cccccccCCeeEEEEEcCCCCeEE-EEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 876 466677789999999999988555 555599999988765544443332 12256788999888
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEeC-----C------CCCEEEEEEcCCCCEEEEEe---------CC--eEEEEEcC
Q 003279 693 RILAAAIENYISILDVETQVCRLKLQG-----H------KNQVHSVCWNTSGEYLASVS---------DE--LVRVWSIG 750 (834)
Q Consensus 693 ~ll~~s~dg~I~iwDl~t~~~~~~l~~-----h------~~~I~sl~~spdg~~Lasgs---------Dg--~I~IwDl~ 750 (834)
.++..+..+.|.+||+-+...+..+.. + .-.++.++.+..|.++++.. || .+++|-..
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 899999999999999988766555431 2 22467788888899998864 22 68899877
Q ss_pred CCCCceeEEE--eecCCCceEEEEEeC-CCC-EEEEEEcCCeEEEEECCCCe----------EE-EeccCCCCeEEEEEe
Q 003279 751 SGSKGECIHE--LSCTGNKFHSCVFHP-TFP-SLLVIGCYETLELWNMTENK----------TL-TLSAHDKLVSSLAAS 815 (834)
Q Consensus 751 s~~~~~~i~~--~~~~~~~I~svafsp-dg~-~L~sgs~dg~I~Iwdl~~~~----------~~-~l~~h~~~V~~lafs 815 (834)
.......+.+ ...|+..+...++.+ ... ..++++.||.++||-+.+.+ +. .-.-|..++++++|+
T Consensus 439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs 518 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS 518 (792)
T ss_pred CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhc
Confidence 6544333322 345666655555543 333 68899999999999883322 11 112478999999999
Q ss_pred CCCCEEEEEecCCcEEEeC
Q 003279 816 TVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 816 pdg~~LaSgs~DG~I~IWd 834 (834)
.||..| +++.|++|.|||
T Consensus 519 ~dGsll-a~s~~~~Itiwd 536 (792)
T KOG1963|consen 519 QDGSLL-AVSFDDTITIWD 536 (792)
T ss_pred CCCcEE-EEecCCEEEEec
Confidence 999655 556888999997
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7e-16 Score=167.22 Aligned_cols=261 Identities=16% Similarity=0.245 Sum_probs=191.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEE-CC-------CCCEEEEEeCCCeEEEE
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF-SP-------SLSRLATSSADRTVRVW 621 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~f-sp-------dg~~Latgs~Dg~I~IW 621 (834)
.|...|.||.|+.+...+.+++ |..+.+|.-.+......+.-..+.|....+ -+ ....|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 5677788999998876666555 556666643333333333222222222221 11 23578899999999988
Q ss_pred ecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeE-eecCCCeeEEEEecCCCEEEEEEcC
Q 003279 622 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKCQSGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 622 Dl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~-~~~~~~i~~l~~sp~g~~ll~~s~d 700 (834)
+-.. ...+....|.+.|.|-.|+|+|.-++ ++++||.|++|.-. |-...+ ......|.|++|.|+.+.++.+. .
T Consensus 91 ~k~~--rVE~sv~AH~~A~~~gRW~~dGtgLl-t~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g 165 (737)
T KOG1524|consen 91 NKSA--RVERSISAHAAAISSGRWSPDGAGLL-TAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQ-G 165 (737)
T ss_pred cccc--hhhhhhhhhhhhhhhcccCCCCceee-eecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEec-C
Confidence 7553 23567788999999999999998666 88899999999865 332222 23467899999999988777664 4
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003279 701 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 779 (834)
Q Consensus 701 g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~ 779 (834)
+.+.|=.+.....+...+.|.+-|.++.|++...++++|+ |-..+|||-.. ..+..-..|..+|++++|.|+ .
T Consensus 166 ~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G----~~Lf~S~~~ey~ITSva~npd-~- 239 (737)
T KOG1524|consen 166 GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG----ANLFTSAAEEYAITSVAFNPE-K- 239 (737)
T ss_pred CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC----cccccCChhccceeeeeeccc-c-
Confidence 6777777777777888899999999999999999999999 88999999654 566677788999999999999 4
Q ss_pred EEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 780 LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 780 L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
++..++.+++++= ....+.|..++||+||..++.|+..|.|.+
T Consensus 240 ~~~v~S~nt~R~~----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 240 DYLLWSYNTARFS----------SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ceeeeeeeeeeec----------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 3333444455521 234578999999999999999999887753
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-14 Score=149.88 Aligned_cols=271 Identities=15% Similarity=0.196 Sum_probs=201.5
Q ss_pred CCeEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCCcee
Q 003279 553 SKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSL 630 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasg-s~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~IWDl~s~~~~i 630 (834)
+.|.-+.|..|.-+++++ ..|+.|.+|++...+-...+.....++..++|+|||+ +|.+...|-.|.||.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 456777888777765554 5677999999998888888888889999999999995 56677789999999999865432
Q ss_pred eeeccCCCCeEEEEEccCCCcEEEEEe-----------------------------------CCCcEEEEECCCCceeeE
Q 003279 631 RTFTGHSTTVMSLDFHPSKEDLLCSCD-----------------------------------NNSEIRYWSINNGSCAGV 675 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fspdg~~llasgs-----------------------------------~Dg~I~lwDl~s~~~i~~ 675 (834)
. .-....+..++|+|+|.+..+..- ++..+.+||---.-.+..
T Consensus 129 ~--~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 129 L--PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred e--cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 2 223345688899999875443221 123455555433333344
Q ss_pred eecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE---------------------------------------
Q 003279 676 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK--------------------------------------- 716 (834)
Q Consensus 676 ~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~--------------------------------------- 716 (834)
+...-++..+.|+|.+.++++|+.|+.++|.+--+.+...+
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 55567899999999999999999999888765433221110
Q ss_pred ---------------------Ee------CCCCCEEEEEEcCCCCEEEEEeCC---eEEEEEcCCCCCceeEEEeecCCC
Q 003279 717 ---------------------LQ------GHKNQVHSVCWNTSGEYLASVSDE---LVRVWSIGSGSKGECIHELSCTGN 766 (834)
Q Consensus 717 ---------------------l~------~h~~~I~sl~~spdg~~LasgsDg---~I~IwDl~s~~~~~~i~~~~~~~~ 766 (834)
++ ...-.+.-++|++|..|+++-.|. .+-+||+... .++.+-....
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l----~l~avLiQk~ 362 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL----KLHAVLIQKH 362 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh----hhhhhhhhcc
Confidence 00 011234568999999999998754 7999999875 3344445578
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCc
Q 003279 767 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 829 (834)
Q Consensus 767 ~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~ 829 (834)
+|....|+|..+.|+++.....+++|.......+......-.|..+.|.-+|..++.++.|..
T Consensus 363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 899999999999999999999999999988777777666788999999999999999998864
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-15 Score=171.85 Aligned_cols=246 Identities=17% Similarity=0.227 Sum_probs=188.7
Q ss_pred CCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeE--EE----EeccCCCCeEEEEECCCC--CEEEEEeCCCeEEEE
Q 003279 551 STSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--KS----TLEEHTQWITDVRFSPSL--SRLATSSADRTVRVW 621 (834)
Q Consensus 551 H~~~V~sl~fSp-dg~~Lasgs~Dg~I~IWd~~t~~~--~~----~l~~h~~~I~~l~fspdg--~~Latgs~Dg~I~IW 621 (834)
-...|+|++|+| +..+||.|+.+|.|.+||+..+.. .. ....|..+|+.+.|..+. .-|++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 356799999999 667888899999999999987655 22 234699999999998754 449999999999999
Q ss_pred ecCCCCceeee-----ec------cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce--------e-eEeecCCC
Q 003279 622 DTENPDYSLRT-----FT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--------A-GVFKCQSG 681 (834)
Q Consensus 622 Dl~s~~~~i~~-----~~------~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~--------i-~~~~~~~~ 681 (834)
+++.-..+... .. .-...+++++|.+.....|+.|+++|.|..-+-...+. . ....+.+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 88743321111 11 12346889999998888999999999988744332211 1 12234678
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEEEeCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCceeE
Q 003279 682 ATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECI 758 (834)
Q Consensus 682 i~~l~~sp~g~~ll~~s~dg~I~iwDl~-t~~~~~~l~~h~~~I~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~~~i 758 (834)
|.++.++|-+..++..+.|.+++||... ...++..+..+...|++++|||..- .++++. ||.|.|||+..... .++
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~-~Pv 479 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE-EPV 479 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc-CCc
Confidence 9999999988877777779999999988 6778888888888899999999765 455555 99999999987543 444
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003279 759 HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 797 (834)
Q Consensus 759 ~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~ 797 (834)
..........+.+.|++.|+.|++|...|.+++|++...
T Consensus 480 ~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 480 LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 454444666778889999999999999999999999643
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-14 Score=163.87 Aligned_cols=234 Identities=13% Similarity=0.111 Sum_probs=172.2
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC---CCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCC
Q 003279 574 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 650 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~---Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~ 650 (834)
..|.+||.+..... .+..+...+.+.+|+|||+.|+..+. +..|++||+.++.. ..+....+.+..++|+|||+
T Consensus 179 ~~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCC
Confidence 36889998765443 34456778999999999999987653 45799999987653 23333334456789999999
Q ss_pred cEEEEEeCCC--cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEEeCCCCCEE
Q 003279 651 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVH 725 (834)
Q Consensus 651 ~llasgs~Dg--~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d-g--~I~iwDl~t~~~~~~l~~h~~~I~ 725 (834)
.++++.+.+| .|++||+.+++..........+....|+|+++.|++++.+ + .|+++|+.++... .+..+...+.
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~ 334 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQ 334 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCcc
Confidence 8887766665 5999999988776665555667889999999999887764 3 5666687776543 3333444566
Q ss_pred EEEEcCCCCEEEEEe--C--CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCe
Q 003279 726 SVCWNTSGEYLASVS--D--ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 798 (834)
Q Consensus 726 sl~~spdg~~Lasgs--D--g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg---~I~Iwdl~~~~ 798 (834)
+.+|+|||++|+..+ + ..|++||+.++.. . .+.. ........|+|||..|++++.++ .++++++....
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~---~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-Q---VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCe-E---EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 889999999988766 3 2688999987732 2 2221 12234678999999999998876 47888997777
Q ss_pred EEEeccCCCCeEEEEEeC
Q 003279 799 TLTLSAHDKLVSSLAAST 816 (834)
Q Consensus 799 ~~~l~~h~~~V~~lafsp 816 (834)
...+..|.+.+...+|+|
T Consensus 410 ~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 410 KARLPATDGQVKFPAWSP 427 (429)
T ss_pred eEECccCCCCcCCcccCC
Confidence 777888889999999987
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-14 Score=147.39 Aligned_cols=278 Identities=14% Similarity=0.211 Sum_probs=203.2
Q ss_pred EEEEecCCCCCeEEEEEcC--C-CCEEEEEeC----CCcEEEEeC--CCCeEEEEe-ccCCCCeEEEEECCCCC-----E
Q 003279 544 EFQLIPASTSKVESCHFSP--D-GKLLATGGH----DKKAVLWCT--ESFTVKSTL-EEHTQWITDVRFSPSLS-----R 608 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSp--d-g~~Lasgs~----Dg~I~IWd~--~t~~~~~~l-~~h~~~I~~l~fspdg~-----~ 608 (834)
++..+.++- .++++.|+. + +.+||.|+. .++|.|..+ ++++.+..- ..|..+++.+.|.|+.. +
T Consensus 37 eiy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdl 115 (364)
T KOG0290|consen 37 EIYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDL 115 (364)
T ss_pred eEEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcch
Confidence 344444443 488888884 3 347888874 456666544 344444222 36899999999999753 4
Q ss_pred EEEEeCCCeEEEEecCCCCcee--------eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc----eeeEe
Q 003279 609 LATSSADRTVRVWDTENPDYSL--------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----CAGVF 676 (834)
Q Consensus 609 Latgs~Dg~I~IWDl~s~~~~i--------~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~----~i~~~ 676 (834)
|||++ -.+++|.+...+..+ ..-..+..++++++|+.-...++.+++-|-+..|||++++. ....+
T Consensus 116 LATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI 193 (364)
T KOG0290|consen 116 LATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI 193 (364)
T ss_pred hhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEE
Confidence 56553 479999998432111 12234668999999998888899999999999999999873 34556
Q ss_pred ecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEeC---CCCCEEEEEEcCC-CCEEEEEe--CCeEEEEEc
Q 003279 677 KCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG---HKNQVHSVCWNTS-GEYLASVS--DELVRVWSI 749 (834)
Q Consensus 677 ~~~~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~~~~~~l~~---h~~~I~sl~~spd-g~~Lasgs--Dg~I~IwDl 749 (834)
.|..+|..++|...+ ..|++++.||.+++||++..+.-..+.. ...+...++|++. -+++++-. ...|.|.|+
T Consensus 194 AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDi 273 (364)
T KOG0290|consen 194 AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDI 273 (364)
T ss_pred ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEe
Confidence 688999999999855 4577888999999999998754333322 2457889999884 46777765 448999999
Q ss_pred CCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeE------EEeccCCCCeEEEEEeCC-CCEE
Q 003279 750 GSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKT------LTLSAHDKLVSSLAASTV-NGMV 821 (834)
Q Consensus 750 ~s~~~~~~i~~~~~~~~~I~svafspdg-~~L~sgs~dg~I~Iwdl~~~~~------~~l~~h~~~V~~lafspd-g~~L 821 (834)
+... ..+.++..|...|+.++|.|.. ..|++++.|..+.|||+..--. +......+.|..+.|++. ...|
T Consensus 274 R~P~--tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwi 351 (364)
T KOG0290|consen 274 RVPC--TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWI 351 (364)
T ss_pred cCCC--cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEE
Confidence 9764 6788999999999999999975 5688888888999999965322 222346788999999964 4567
Q ss_pred EEEec
Q 003279 822 ASASH 826 (834)
Q Consensus 822 aSgs~ 826 (834)
+.+..
T Consensus 352 ai~~~ 356 (364)
T KOG0290|consen 352 AICFG 356 (364)
T ss_pred EEEec
Confidence 76654
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-14 Score=144.84 Aligned_cols=229 Identities=20% Similarity=0.208 Sum_probs=168.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEecCC---------CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 003279 596 WITDVRFSPSLSRLATSSADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 666 (834)
Q Consensus 596 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~s---------~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwD 666 (834)
.|..-+|+|.+++|+.|+.+|.|.++.+.+ ++..+..+.+|.++|+.++|+. .+|.+|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEee
Confidence 456678999999999999999999998863 3344566789999999999993 3565776 69999998
Q ss_pred CCCCce------eeEee--------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCC
Q 003279 667 INNGSC------AGVFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 732 (834)
Q Consensus 667 l~s~~~------i~~~~--------~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spd 732 (834)
.+.... +.... .-..|+.+-..|..+.+++++.|+.++.||+++|+...++++|++.|.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 764321 11111 1235888999999999999999999999999999999999999999999998444
Q ss_pred CCEEEEEe-CCeEEEEEcCCCCCceeEEEeec------C-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEecc
Q 003279 733 GEYLASVS-DELVRVWSIGSGSKGECIHELSC------T-GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA 804 (834)
Q Consensus 733 g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~------~-~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~ 804 (834)
..-+++|+ ||+++|||+++.+....+...+. + ...|-+++. +...+++|+ ...+.+|+++..+......
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEe
Confidence 44455666 99999999999844333332221 1 123444444 444555544 4579999999999887777
Q ss_pred CCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 805 HDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 805 h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
....|..+.|..| .+++++....|.-|
T Consensus 245 ipa~v~~v~F~~d--~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 245 IPARVHLVDFVDD--CVLIGGEGNHVQSY 271 (325)
T ss_pred cccceeEeeeecc--eEEEeccccceeee
Confidence 7888998988744 46666655555444
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-16 Score=169.29 Aligned_cols=238 Identities=17% Similarity=0.252 Sum_probs=170.6
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-ccCCCCeEEEEECC--CCCEEEEEeCCCeEE
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVR 619 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l-~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~ 619 (834)
.....|.||++.|.|+.|+.||.+|++|+.|-.+.|||.-..+.+..+ .+|...|.++.|-| +.+++++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 345678899999999999999999999999999999999988888776 68999999999999 467899999999999
Q ss_pred EEecCC---------CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCcee-eEe----------ecC
Q 003279 620 VWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVF----------KCQ 679 (834)
Q Consensus 620 IWDl~s---------~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i-~~~----------~~~ 679 (834)
+||+.. .......+..|...|..|+..|++.+.|.++++||+|+-+|++....- ... ..-
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999985 223455677899999999999999999999999999999999863211 110 001
Q ss_pred CCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEeC-----CCCCEEEEE-EcCCCCEEEEEeCCeEEEEEcCCC
Q 003279 680 SGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG-----HKNQVHSVC-WNTSGEYLASVSDELVRVWSIGSG 752 (834)
Q Consensus 680 ~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~~~~~~l~~-----h~~~I~sl~-~spdg~~LasgsDg~I~IwDl~s~ 752 (834)
-...|+.++|.. .+|++|+.|-..++||.+...+...-.+ ......|+. |+|.+. ...++.+.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl---kn~~gn~~------- 270 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL---KNSQGNLD------- 270 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc---cCcccccc-------
Confidence 246788999965 4577888899999999653211110000 011111221 122111 00011100
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 753 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 753 ~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
.....++-+.|+|+|..|++.-....|+++|+..++..
T Consensus 271 ----------~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 271 ----------RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred ----------cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 00123456789999988888877778999999876644
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-14 Score=149.71 Aligned_cols=230 Identities=14% Similarity=0.180 Sum_probs=180.3
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC--CcEEEEECCCCc
Q 003279 594 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGS 671 (834)
Q Consensus 594 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D--g~I~lwDl~s~~ 671 (834)
...+..+.|+.+...|..|+.|| .++|..+.-.. ..........|..+-|+.. ++|..+.+ +.+++++++.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k-~~~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK-CFSKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHH-hhcccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcccCc
Confidence 45677888999999999999998 57887775433 1122223344556667633 55555544 459999999999
Q ss_pred eeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC---CCCCEEEEEEcCCCCEEEEEe---CCeEE
Q 003279 672 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS---DELVR 745 (834)
Q Consensus 672 ~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~---h~~~I~sl~~spdg~~Lasgs---Dg~I~ 745 (834)
.+..+.....|.++.++.+ +|+++-.+. |+|||+++.+.+.++.. +...+.++++++.+.||+.-+ .|.|.
T Consensus 80 ~ICe~~fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 80 TICEIFFPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred eEEEEecCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 9999988999999999764 555555444 99999999998888764 344566666777777888754 67999
Q ss_pred EEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEE-Eecc--CCCCeEEEEEeCCCCEE
Q 003279 746 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSA--HDKLVSSLAASTVNGMV 821 (834)
Q Consensus 746 IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg-~I~Iwdl~~~~~~-~l~~--h~~~V~~lafspdg~~L 821 (834)
|||+.+- ..+..+..|.+.+-+++|+++|.+|++++..| .|+||.+.+|..+ .++. ....|.+++|+|++.+|
T Consensus 157 l~d~~nl---~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 157 LFDTINL---QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred EEEcccc---eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 9999887 78888899999999999999999999999999 6899999999877 4432 24568899999999999
Q ss_pred EEEecCCcEEEeC
Q 003279 822 ASASHDKCVKIWK 834 (834)
Q Consensus 822 aSgs~DG~I~IWd 834 (834)
++.+..++|+||+
T Consensus 234 ~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 234 AASSNTETVHIFK 246 (391)
T ss_pred EEecCCCeEEEEE
Confidence 9999999999985
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-13 Score=145.04 Aligned_cols=233 Identities=16% Similarity=0.245 Sum_probs=175.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC--eEEEEecCCCCce
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYS 629 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg--~I~IWDl~s~~~~ 629 (834)
...|..+.|+.|...|..|+.|| .++|+.+..............|.-.-|+. .++|..+.+. .++++++.....
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~- 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTT- 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCce-
Confidence 34577788999999999999887 57887776544333333334455566654 4666666543 589999886543
Q ss_pred eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC----CCeeEEEEecCCCEEEEEEc--CCeE
Q 003279 630 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ----SGATQMRFQPRLGRILAAAI--ENYI 703 (834)
Q Consensus 630 i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~----~~i~~l~~sp~g~~ll~~s~--dg~I 703 (834)
+..+. ....|.++.++.+ +++ ++-. ..|+|||+++.+.+.++... .++..+.++..+.+++.-+. .|.|
T Consensus 81 ICe~~-fpt~IL~VrmNr~--RLv-V~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNRK--RLV-VCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred EEEEe-cCCceEEEEEccc--eEE-EEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 33332 4567999999854 344 4543 34999999999999888753 33555566666667776544 5899
Q ss_pred EEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CC-eEEEEEcCCCCCceeEEEeecC--CCceEEEEEeCCCCE
Q 003279 704 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPS 779 (834)
Q Consensus 704 ~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg-~I~IwDl~s~~~~~~i~~~~~~--~~~I~svafspdg~~ 779 (834)
.+||+.+-+.+..+..|.+.+-+++|+++|.+||+++ .| .||||.+.++ ..+.+|+.. ...|.+++|++++.+
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G---~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG---QKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc---cEeeeeeCCceeeEEEEEEECCCCCe
Confidence 9999999999999999999999999999999999999 44 7999999988 566666543 345789999999999
Q ss_pred EEEEEcCCeEEEEECCC
Q 003279 780 LLVIGCYETLELWNMTE 796 (834)
Q Consensus 780 L~sgs~dg~I~Iwdl~~ 796 (834)
|++.+..++|+||.++.
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 99999999999998854
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.5e-15 Score=162.77 Aligned_cols=240 Identities=16% Similarity=0.218 Sum_probs=182.8
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEec
Q 003279 544 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 623 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 623 (834)
...++++|.+.|+|++|+.||+.+|+|+.|+.|.||+-.-... ..+ .|.+.|.|+.|+|-...|++|+-. ..-+|..
T Consensus 45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~ 121 (1081)
T KOG1538|consen 45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-LKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSP 121 (1081)
T ss_pred cccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-eee-ccCCeeeEeecCchHHHhhhcchh-hccccCh
Confidence 3578899999999999999999999999999999998543222 222 599999999999999999998754 3668877
Q ss_pred CCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee---cCCCeeEEEEecCC-----CEEE
Q 003279 624 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRL-----GRIL 695 (834)
Q Consensus 624 ~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~---~~~~i~~l~~sp~g-----~~ll 695 (834)
+.... ... .....|.+++|..||. +++.|-.+|+|.+-+-.....+..-. .+++|.+++|+|.. ..++
T Consensus 122 ~qK~V--~K~-kss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~a 197 (1081)
T KOG1538|consen 122 EQKSV--SKH-KSSSRIICCSWTNDGQ-YLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILA 197 (1081)
T ss_pred hhhhH--Hhh-hhheeEEEeeecCCCc-EEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEE
Confidence 65332 111 1346788999999977 66788889999998765443333333 35679999999963 3566
Q ss_pred EEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEe
Q 003279 696 AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 774 (834)
Q Consensus 696 ~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafs 774 (834)
+.....++.+|.+.. +.+..-+.-.-...|+.+.++|.|+..|+ |+.+++|.-+ + ..+.++......|++++..
T Consensus 198 V~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-G---vrLGTvg~~D~WIWtV~~~ 272 (1081)
T KOG1538|consen 198 VADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-G---VRLGTVGEQDSWIWTVQAK 272 (1081)
T ss_pred EEeccceeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec-C---eEEeeccccceeEEEEEEc
Confidence 777777787777753 33322222334567899999999999888 9999999643 2 4566666678899999999
Q ss_pred CCCCEEEEEEcCCeEEEEECC
Q 003279 775 PTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 775 pdg~~L~sgs~dg~I~Iwdl~ 795 (834)
|++.++++|+.||+|..|++-
T Consensus 273 PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 273 PNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred cCCceEEEEEccCeeehhhhH
Confidence 999999999999999999874
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.7e-15 Score=169.13 Aligned_cols=220 Identities=17% Similarity=0.204 Sum_probs=158.8
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEE--EEeccCCCCeEEEEECCCCCEEEEEe-CCCeEE
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSS-ADRTVR 619 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs~D---g~I~IWd~~t~~~~--~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~ 619 (834)
..+..|...|.+.+|||||+.|++++.+ ..|++||+.+++.. ..+.+| ..+++|+|||+.|++++ .+|.+.
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence 4456788889999999999999988754 36999999887543 333333 45789999999888765 678666
Q ss_pred EE--ecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC-ceeeEeecCCCeeEEEEecCCCEEEE
Q 003279 620 VW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILA 696 (834)
Q Consensus 620 IW--Dl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~-~~i~~~~~~~~i~~l~~sp~g~~ll~ 696 (834)
|| |+.++. ...+..+...+.++.|+||++.+++++..++.+.||++... .....+.. .. .+..|+|+++.|++
T Consensus 274 Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~-~~-~~~~~SpDG~~ia~ 349 (429)
T PRK01742 274 IYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG-RG-YSAQISADGKTLVM 349 (429)
T ss_pred EEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC-CC-CCccCCCCCCEEEE
Confidence 55 555433 45566677788899999999988878777888888876432 22233322 22 46789999999988
Q ss_pred EEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003279 697 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 775 (834)
Q Consensus 697 ~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp 775 (834)
++.++ +.+||+.++........+ ...++.|+|||++|++++ ++.+.+|++... ....+..+..+.+.+..++|+|
T Consensus 350 ~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~-~G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 350 INGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSA-DGRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred EcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCceEEccCCCCCCCCcccCC
Confidence 87754 666999988655333222 345788999999999988 887777776421 1156667777778888899998
Q ss_pred C
Q 003279 776 T 776 (834)
Q Consensus 776 d 776 (834)
-
T Consensus 426 ~ 426 (429)
T PRK01742 426 Y 426 (429)
T ss_pred C
Confidence 5
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-14 Score=149.05 Aligned_cols=224 Identities=15% Similarity=0.198 Sum_probs=172.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC---CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t---~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~ 626 (834)
--..+|+|.+|++|+..+|++.....|.||.... .+..+++..|...|++|+|+|..+.|++|+.|..-+||....+
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 3456899999999999999999999999998764 4577899999999999999999999999999999999998433
Q ss_pred -Cc-eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceee-----EeecCCCeeEEEEecCCCEEEEEEc
Q 003279 627 -DY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKCQSGATQMRFQPRLGRILAAAI 699 (834)
Q Consensus 627 -~~-~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~-----~~~~~~~i~~l~~sp~g~~ll~~s~ 699 (834)
.. +...+..++..++++.|+|.++ .|++|+....|.||-++...-=. .....+.|.++.|+|++-.+++|+.
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~ 166 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST 166 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence 32 3345667889999999999965 67788888899998877543221 1223567899999999999999999
Q ss_pred CCeEEEEECC-----C-------------CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEE
Q 003279 700 ENYISILDVE-----T-------------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 760 (834)
Q Consensus 700 dg~I~iwDl~-----t-------------~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~ 760 (834)
|+..+||..- . |....++....+.|..+.|+|+|..|+-.+ |..+.+-|...... .+..
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~--~v~~ 244 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE--RVQS 244 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch--hccc
Confidence 9999988542 1 122233334567899999999999999877 99999999876531 2222
Q ss_pred eecCCCceEEEEEeCC
Q 003279 761 LSCTGNKFHSCVFHPT 776 (834)
Q Consensus 761 ~~~~~~~I~svafspd 776 (834)
.....-+..++.|-.+
T Consensus 245 ~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISE 260 (361)
T ss_pred hhhccCCceeeEeecC
Confidence 2223345555555443
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-13 Score=152.08 Aligned_cols=285 Identities=17% Similarity=0.173 Sum_probs=184.7
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEe
Q 003279 544 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWD 622 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWD 622 (834)
.+..+......-..+.|+|||+++++++.||.|.++|+.+.+.+.++.... ...++++++||++++++. .++.|.++|
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D 106 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVID 106 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEE
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEec
Confidence 345555444333457899999999999999999999999999999997654 467899999999998776 589999999
Q ss_pred cCCCCceeeeecc-------CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCcee--eEeecCCCeeEEEEecCCCE
Q 003279 623 TENPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFKCQSGATQMRFQPRLGR 693 (834)
Q Consensus 623 l~s~~~~i~~~~~-------h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i--~~~~~~~~i~~l~~sp~g~~ 693 (834)
..+.+. +..+.. ....+..|..+|....++++--+.+.|.+.|....+.+ ..+..........|+|++++
T Consensus 107 ~~tle~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry 185 (369)
T PF02239_consen 107 AETLEP-VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRY 185 (369)
T ss_dssp TTT--E-EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSE
T ss_pred cccccc-eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccce
Confidence 988654 444332 23467788888887766666666689999998775533 44555677889999999999
Q ss_pred EEEEEc-CCeEEEEECCCCeEEEEEeC----CCCCEEEEE-------Ec--CCCCEE-EEEeCCeEEEEEcCCCCCceeE
Q 003279 694 ILAAAI-ENYISILDVETQVCRLKLQG----HKNQVHSVC-------WN--TSGEYL-ASVSDELVRVWSIGSGSKGECI 758 (834)
Q Consensus 694 ll~~s~-dg~I~iwDl~t~~~~~~l~~----h~~~I~sl~-------~s--pdg~~L-asgsDg~I~IwDl~s~~~~~~i 758 (834)
++++.. ++.|.++|.++++.+..+.. |..++..+- |. ..+... ...+.+.+.+||..+. +.+
T Consensus 186 ~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w---kvv 262 (369)
T PF02239_consen 186 FLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW---KVV 262 (369)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT---SEE
T ss_pred eeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcC---eEE
Confidence 887654 68999999999987776542 344443331 21 122222 2222445556776665 677
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEE---E-cCCeEEEEECCCCeEEEecc--CCCCeEEEEEeCCCCEEEEEecCC--cE
Q 003279 759 HELSCTGNKFHSCVFHPTFPSLLVI---G-CYETLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDK--CV 830 (834)
Q Consensus 759 ~~~~~~~~~I~svafspdg~~L~sg---s-~dg~I~Iwdl~~~~~~~l~~--h~~~V~~lafspdg~~LaSgs~DG--~I 830 (834)
..+...... .-+..||+++++++. + ..+.|.++|..+.+.+.... ....+..+.|++||+.+..+..|+ .|
T Consensus 263 ~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i 341 (369)
T PF02239_consen 263 KTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAI 341 (369)
T ss_dssp EEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEE
T ss_pred EEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEE
Confidence 788776666 778889999999998 3 34699999999998764332 223599999999999766655443 59
Q ss_pred EEeC
Q 003279 831 KIWK 834 (834)
Q Consensus 831 ~IWd 834 (834)
.|||
T Consensus 342 ~v~D 345 (369)
T PF02239_consen 342 VVYD 345 (369)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
|
... |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.8e-14 Score=161.72 Aligned_cols=234 Identities=16% Similarity=0.093 Sum_probs=169.6
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCC
Q 003279 574 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 650 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~ 650 (834)
..|.+||.... ....+..+...+.+.+|+||++.|+.++.+ ..|++||+.++.. ..+..+.+...++.|+|+|+
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCC
Confidence 46899998644 444566677889999999999999988753 4699999987653 33344455566889999999
Q ss_pred cEEEEEeCCC--cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc-CC--eEEEEECCCCeEEEEEeCCCCCEE
Q 003279 651 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YISILDVETQVCRLKLQGHKNQVH 725 (834)
Q Consensus 651 ~llasgs~Dg--~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg--~I~iwDl~t~~~~~~l~~h~~~I~ 725 (834)
.++++.+.+| .|++||+.+++..............+|+|+++.|++++. ++ .|+++|+.++.... +..+.....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~ 339 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNA 339 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCcc
Confidence 8887777666 599999998876554444344567899999999988775 34 47778887765433 222334455
Q ss_pred EEEEcCCCCEEEEEe-CC---eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCe
Q 003279 726 SVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENK 798 (834)
Q Consensus 726 sl~~spdg~~Lasgs-Dg---~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d---g~I~Iwdl~~~~ 798 (834)
.++|+|||++|+..+ ++ .|.+||+.++.. . .+. +......+.|+|+|++|+..+.+ ..|+++++..+.
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~---~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV---R-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCe---E-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 789999999998765 32 699999987632 1 222 22234567999999998887764 378899997776
Q ss_pred EEEeccCCCCeEEEEEeC
Q 003279 799 TLTLSAHDKLVSSLAAST 816 (834)
Q Consensus 799 ~~~l~~h~~~V~~lafsp 816 (834)
...+..+.+.+..++|+|
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 666666777888888886
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.2e-14 Score=146.46 Aligned_cols=278 Identities=15% Similarity=0.234 Sum_probs=192.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-cCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCCCc-
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY- 628 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~s~~~- 628 (834)
+-.+..++|++.-..+|++..|-.|++||-.. ++...++ .....|+|++|-|. .+.|++|+.. -|.||..+....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence 34578899999777789999999999999766 4444553 34467999999996 4566666655 489998763221
Q ss_pred ------------eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEe-ecCCCeeEEEEecCCCEEE
Q 003279 629 ------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRIL 695 (834)
Q Consensus 629 ------------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~-~~~~~i~~l~~sp~g~~ll 695 (834)
.+....+| .+|+++.|.+||..++-++-.|..|.|||..++..+... ...+++.-+.|+||+.+|+
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 12233445 689999999998866544456789999999999888776 4567789999999999999
Q ss_pred EEEcCCeEEEEECC-CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCce------------eEEEee
Q 003279 696 AAAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE------------CIHELS 762 (834)
Q Consensus 696 ~~s~dg~I~iwDl~-t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~------------~i~~~~ 762 (834)
++..|+..++|... +..+..-.. ..+.|...+|+|+|++|.....+.-++|.+....... .+..+.
T Consensus 255 aAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred Eecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 99999999999554 444433333 3458999999999999888877766777664322110 111111
Q ss_pred -----c----CCCceEEEEEeCCCCEEEEEEcCC--------eEEEEECCCCeEEEec--c--CCCCeEEEEEeC---CC
Q 003279 763 -----C----TGNKFHSCVFHPTFPSLLVIGCYE--------TLELWNMTENKTLTLS--A--HDKLVSSLAAST---VN 818 (834)
Q Consensus 763 -----~----~~~~I~svafspdg~~L~sgs~dg--------~I~Iwdl~~~~~~~l~--~--h~~~V~~lafsp---dg 818 (834)
. -.+++.+++|+|.|.+|++.-..+ .|.+||....-++.+. + .......|+|+| ++
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g 413 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEG 413 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCC
Confidence 1 146788999999999999876544 4677887766555332 1 112244566665 44
Q ss_pred CEEEEEecCCcEEEe
Q 003279 819 GMVASASHDKCVKIW 833 (834)
Q Consensus 819 ~~LaSgs~DG~I~IW 833 (834)
.+|..|=..|.|.-|
T Consensus 414 ~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 414 RLLSIAWSTGRIQRY 428 (445)
T ss_pred cEEEEEeccCceEee
Confidence 555555555655433
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.6e-14 Score=159.81 Aligned_cols=234 Identities=13% Similarity=0.152 Sum_probs=171.2
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC---CCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCC
Q 003279 574 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 650 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~---Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~ 650 (834)
..|++||.+. .....+..|...|.+.+|+|||+.|+..+. +..|++||+.++.. ..+..+.+.+.+.+|+|||+
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCC
Confidence 4788889754 444566678889999999999999988764 46899999987653 44555667788999999999
Q ss_pred cEEEEEeCCCc--EEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEEEeCCCCCEE
Q 003279 651 DLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVH 725 (834)
Q Consensus 651 ~llasgs~Dg~--I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d---g~I~iwDl~t~~~~~~l~~h~~~I~ 725 (834)
.++++.+.++. |++||+.++................|+|+++.|++++.. ..|+++|+..+.... +..+...+.
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~ 337 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYS 337 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCccc
Confidence 88888776665 888899888765544444456778999999999887753 368889988765433 333455667
Q ss_pred EEEEcCCCCEEEEEe-C---CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC------CeEEEEECC
Q 003279 726 SVCWNTSGEYLASVS-D---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY------ETLELWNMT 795 (834)
Q Consensus 726 sl~~spdg~~Lasgs-D---g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d------g~I~Iwdl~ 795 (834)
...|+|||++|+... + ..|.+||+..+. ...+. ....+..+.|+|||+.|+..+.+ ..|+++|+.
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCc----eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 789999999998876 2 268888986542 12222 22346778999999998876653 268888998
Q ss_pred CCeEEEeccCCCCeEEEEEeCC
Q 003279 796 ENKTLTLSAHDKLVSSLAASTV 817 (834)
Q Consensus 796 ~~~~~~l~~h~~~V~~lafspd 817 (834)
++....+. ..+.+...+|+|-
T Consensus 413 g~~~~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 413 GRNEREVP-TPGDASDPAWSPL 433 (435)
T ss_pred CCceEEcc-CCCCccCcccCCC
Confidence 77765554 4556778888763
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.7e-14 Score=155.43 Aligned_cols=277 Identities=14% Similarity=0.167 Sum_probs=202.9
Q ss_pred CCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc
Q 003279 550 ASTSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 628 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~-Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~ 628 (834)
.|....+.|..+|||+| +|+|.+.-.|++||+........-.-....|.-.-++.|-..++.-..|.+|-+..-.....
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 57777889999999997 56777888999999998766544433445566666666655566666777776654332111
Q ss_pred eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC-CCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003279 629 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILD 707 (834)
Q Consensus 629 ~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~-~~i~~l~~sp~g~~ll~~s~dg~I~iwD 707 (834)
.++ -...-.+++++.-.-.+++.| ....|+-++++.|..+..+... ..++++.+++....|++|+.+|.|..||
T Consensus 129 ~~R----IP~~GRDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 129 RTR----IPKFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred eee----cCcCCccccccCCCccEEEee-cCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 111 112334555654434455444 4678999999999999888875 7799999999999999999999999999
Q ss_pred CCCCeEEEEEe------CCCC-----CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003279 708 VETQVCRLKLQ------GHKN-----QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 775 (834)
Q Consensus 708 l~t~~~~~~l~------~h~~-----~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp 775 (834)
.++...+..+. .|.+ .|+++.|+.+|-.+++|. +|.|.|||+++..+ .+..-....-+|..+.|.+
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--l~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--LLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--eeecccCCccceeeecccc
Confidence 99876555543 2333 499999999999999998 99999999998742 2223334456788899977
Q ss_pred CCCE-EEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 776 TFPS-LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 776 dg~~-L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
.+.. .++......++|||-.+|+..........+..+|+-|++.++++|-.++.+..|
T Consensus 282 ~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 282 TDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred cCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence 6433 333334448999999999999777777789999999999999999888776543
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-14 Score=146.88 Aligned_cols=211 Identities=20% Similarity=0.359 Sum_probs=164.1
Q ss_pred CeeeeEEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE-EEEe-----ccCCCCeEEEEECC--CCCEE
Q 003279 539 GFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTL-----EEHTQWITDVRFSP--SLSRL 609 (834)
Q Consensus 539 g~~~~~~~~l~-gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~-~~~l-----~~h~~~I~~l~fsp--dg~~L 609 (834)
..++..+..+. .|-+.|.|+.|.|++..||+-. |..|.+|+++.... +..+ .+|....++-+|+| ++..+
T Consensus 109 ~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv 187 (370)
T KOG1007|consen 109 SSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV 187 (370)
T ss_pred cchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceE
Confidence 34555666666 6667999999999999999876 78999999987665 3333 23566788899999 67777
Q ss_pred EEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-eeeEeec-CCCeeEEEE
Q 003279 610 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC-QSGATQMRF 687 (834)
Q Consensus 610 atgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~-~i~~~~~-~~~i~~l~~ 687 (834)
++. .|+++..||+++.......-..|...|..++|+|+..++|++|++||.|++||.+.-+ ++..+.. ..-+.++.|
T Consensus 188 ~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRf 266 (370)
T KOG1007|consen 188 ATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRF 266 (370)
T ss_pred EEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEe
Confidence 776 6889999999987766667778999999999999999999999999999999998644 4555543 345999999
Q ss_pred ecCC-CEEEEEEcCCeEEEEECCCC-----------------------------eEEEEEeCCCCCEEEEEEcCCCCEEE
Q 003279 688 QPRL-GRILAAAIENYISILDVETQ-----------------------------VCRLKLQGHKNQVHSVCWNTSGEYLA 737 (834)
Q Consensus 688 sp~g-~~ll~~s~dg~I~iwDl~t~-----------------------------~~~~~l~~h~~~I~sl~~spdg~~La 737 (834)
+|.. ..|++++.|..|.+|....- ..+.++..|...|++++|+.-..+++
T Consensus 267 n~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiF 346 (370)
T KOG1007|consen 267 NPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIF 346 (370)
T ss_pred cCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeE
Confidence 9964 56778888999998854310 11335667999999999998666555
Q ss_pred -EEe-CCeEEEEEcCC
Q 003279 738 -SVS-DELVRVWSIGS 751 (834)
Q Consensus 738 -sgs-Dg~I~IwDl~s 751 (834)
+-+ ||.+.|=.+..
T Consensus 347 ASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 347 ASLSYDGRVIISSVPR 362 (370)
T ss_pred EEeccCceEEeecCCh
Confidence 445 99998876653
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-15 Score=163.68 Aligned_cols=262 Identities=16% Similarity=0.266 Sum_probs=210.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeec
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 634 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~ 634 (834)
-..+.|+.+|++|+.|+..|.|-.+|..+++....+.. ...|.++.|..+..+||++ ....++|||-... .+..+.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~Gt--ElHClk 207 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDNNGT--ELHCLK 207 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecCCCc--EEeehh
Confidence 45689999999999999999999999999999888853 4569999999888888877 5678999997642 355555
Q ss_pred cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 003279 635 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVC 713 (834)
Q Consensus 635 ~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~ 713 (834)
.| ..|..+.|.|. .++|++++..|.++.-|+.+|+.+..+.. .+.+..++-+|-...+-+|...|+|.+|.....++
T Consensus 208 ~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 208 RH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred hc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence 44 56899999998 67999999999999999999999988876 45678888899988888999999999999999999
Q ss_pred EEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003279 714 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 792 (834)
Q Consensus 714 ~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iw 792 (834)
+..+-.|.++|.+|++.++|.|+++++ |..++|||++.. ..++++.. ......++||..| +++.+....|.||
T Consensus 286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~---~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF---YQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIW 359 (545)
T ss_pred HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccc---cccceeec-CCCcccccccccc--ceeeecCCeeeee
Confidence 988889999999999999999999999 999999999987 34444443 4566778888776 4555555689999
Q ss_pred E-CCCCe---EEEeccC--CCCeEEEEEeCCCCEEEEEecCC
Q 003279 793 N-MTENK---TLTLSAH--DKLVSSLAASTVNGMVASASHDK 828 (834)
Q Consensus 793 d-l~~~~---~~~l~~h--~~~V~~lafspdg~~LaSgs~DG 828 (834)
. .-.+. ......| .+.|..+.|.|-...|..|...|
T Consensus 360 ~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 360 KDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred hhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 4 32211 1122222 45899999999777776665544
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.2e-15 Score=156.77 Aligned_cols=194 Identities=23% Similarity=0.252 Sum_probs=154.8
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeec-
Q 003279 556 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT- 634 (834)
Q Consensus 556 ~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~- 634 (834)
.+++|+.+|..|++|+.||++|||+..+...+.....|.+.|.++.|+||+++|++-+.| ..+||++.++.. +....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-LARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-hhhcCC
Confidence 689999999999999999999999998888888888899999999999999999999999 899999998743 33222
Q ss_pred -cCCCCeEEEEEccCC---Cc-EEEEEeCCCcEEEEECCCCc------eeeEeecCCCeeEEEEecCCCEEEEEEcCCeE
Q 003279 635 -GHSTTVMSLDFHPSK---ED-LLCSCDNNSEIRYWSINNGS------CAGVFKCQSGATQMRFQPRLGRILAAAIENYI 703 (834)
Q Consensus 635 -~h~~~V~sl~fspdg---~~-llasgs~Dg~I~lwDl~s~~------~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I 703 (834)
........+.|+.++ .. +++.....+.|+.||+...+ ....+.....|.+++++.+|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 233456677787664 22 33333445667777664322 12222335689999999999999999999999
Q ss_pred EEEECCCCeEEEEEe-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCC
Q 003279 704 SILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 751 (834)
Q Consensus 704 ~iwDl~t~~~~~~l~-~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s 751 (834)
.||+..+.+.+..++ .|...|+.+.|+||.+++++.+ |.++.|..+.-
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999987776665 4999999999999999999877 88888887654
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-15 Score=172.56 Aligned_cols=270 Identities=19% Similarity=0.217 Sum_probs=202.8
Q ss_pred CcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 003279 497 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 576 (834)
Q Consensus 497 ~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I 576 (834)
..++...+.|.+|+.|..|++|...+. .....++||.+.|+.++.+.+..++|+++.|..|
T Consensus 196 a~fDrtg~~Iitgsdd~lvKiwS~et~-------------------~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 196 AIFDRTGRYIITGSDDRLVKIWSMETA-------------------RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred eeeccccceEeecCccceeeeeeccch-------------------hhhccCCCCccccchhccchhhhhhhhcccCceE
Confidence 345666789999999999999964433 2356788999999999999999999999999999
Q ss_pred EEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC-CCc-eeeeec-cCCCCeEEEEEccCCCcEE
Q 003279 577 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PDY-SLRTFT-GHSTTVMSLDFHPSKEDLL 653 (834)
Q Consensus 577 ~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s-~~~-~i~~~~-~h~~~V~sl~fspdg~~ll 653 (834)
++|.+.++.++..+.+|++.|++|+|+|-. +.+.||++++||.+- ... .-+... ....-+.++-|..++. -+
T Consensus 257 rvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~-~f 331 (1113)
T KOG0644|consen 257 RVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD-RF 331 (1113)
T ss_pred EEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccc-cc
Confidence 999999999999999999999999999964 778999999999881 110 001111 1234566666766655 45
Q ss_pred EEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCC
Q 003279 654 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 732 (834)
Q Consensus 654 asgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spd 732 (834)
.+++.|+.-..|.+....+.. ..+.-+.++.+. .+.+++-.+-.+.+|++.++...+.+.+|...+..+.++|-
T Consensus 332 ~Tgs~d~ea~n~e~~~l~~~~-----~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpf 406 (1113)
T KOG0644|consen 332 LTGSRDGEARNHEFEQLAWRS-----NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPF 406 (1113)
T ss_pred ccccCCcccccchhhHhhhhc-----cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCC
Confidence 589999988888765322110 011111111111 34555666788999999999999999999999999999997
Q ss_pred CCEEEE-Ee-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 003279 733 GEYLAS-VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 798 (834)
Q Consensus 733 g~~Las-gs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~ 798 (834)
+..++- ++ ||.+.|||+-.+. .+..+......+....|+++|..++....-|.++|.....++
T Consensus 407 n~ri~msag~dgst~iwdi~eg~---pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 407 NPRIAMSAGYDGSTIIWDIWEGI---PIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred CcHhhhhccCCCceEeeecccCC---cceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 765553 34 9999999999884 343333446778889999999999999888999999876554
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-13 Score=158.46 Aligned_cols=274 Identities=21% Similarity=0.223 Sum_probs=195.6
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCC---CEEEEEeCCCeEEEEecCCCCceeee
Q 003279 556 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SRLATSSADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 556 ~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg---~~Latgs~Dg~I~IWDl~s~~~~i~~ 632 (834)
..-.||+|+++++... +..|.||...++.++..+++|..+++.+.+.|.. .++++++.||.|++||...+.. +++
T Consensus 20 ~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L-lkt 97 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL-LKT 97 (792)
T ss_pred cccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE-EEE
Confidence 3457999999888776 4689999999999999999999999999998854 4788999999999999997654 555
Q ss_pred eccCCCCeEEEEEcc---CCCcEEEEEeCCCcE-EEEECCCCceeeEe-------------ecCCCeeEEEEecCCCEEE
Q 003279 633 FTGHSTTVMSLDFHP---SKEDLLCSCDNNSEI-RYWSINNGSCAGVF-------------KCQSGATQMRFQPRLGRIL 695 (834)
Q Consensus 633 ~~~h~~~V~sl~fsp---dg~~llasgs~Dg~I-~lwDl~s~~~i~~~-------------~~~~~i~~l~~sp~g~~ll 695 (834)
+..+ .+|..+.+.| +....++.+..|..+ ........+....+ .....-.++.+++.+ .+.
T Consensus 98 ~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~g-e~~ 175 (792)
T KOG1963|consen 98 FDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSG-EFK 175 (792)
T ss_pred EecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCc-eEE
Confidence 4432 3344443322 111112122222111 11111111111111 011113556666654 455
Q ss_pred EEEcCCeEEEEECCCCeEEEE----EeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCC-CCCceeEEEeecCCCceE
Q 003279 696 AAAIENYISILDVETQVCRLK----LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS-GSKGECIHELSCTGNKFH 769 (834)
Q Consensus 696 ~~s~dg~I~iwDl~t~~~~~~----l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s-~~~~~~i~~~~~~~~~I~ 769 (834)
....+..+.+|+..++..... -..|...+++.+++|++++++++. ||.|.+|.--. .........+.-|...|.
T Consensus 176 ~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~ 255 (792)
T KOG1963|consen 176 GIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN 255 (792)
T ss_pred EEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccc
Confidence 555667888888887541111 123677789999999999999999 99999996443 223345666778899999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 770 SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 770 svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
+++|+++|.+|++||.++.+.+|.+.+++..-+..-.++|..+.++||+.+.+....|..|.+-
T Consensus 256 ~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 256 SLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLI 319 (792)
T ss_pred eeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence 9999999999999999999999999999977777888999999999999999999999998763
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-13 Score=156.45 Aligned_cols=235 Identities=14% Similarity=0.060 Sum_probs=160.8
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCC
Q 003279 574 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 650 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~ 650 (834)
..|.+||.+ +.....+..+...+.+.+|+||++.|+..+.+ ..|++||+.++.. ..+....+.+.+.+|+||+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 467777764 44445556778889999999999999887753 3599999987653 23333445667899999999
Q ss_pred cEEEEEeCCCcEEEE--ECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc-CCe--EEEEECCCCeEEEEEeCCCCCEE
Q 003279 651 DLLCSCDNNSEIRYW--SINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENY--ISILDVETQVCRLKLQGHKNQVH 725 (834)
Q Consensus 651 ~llasgs~Dg~I~lw--Dl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~--I~iwDl~t~~~~~~l~~h~~~I~ 725 (834)
.++++.+.++...+| |+..+.......+........|+|+|+.|++++. ++. |+++|+.++..... ..+.....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-t~~g~~~~ 331 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-TFTGSYNT 331 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-ecCCCCcC
Confidence 888888878765555 5555543333223334567889999999887765 344 44455555543222 22233345
Q ss_pred EEEEcCCCCEEEEEe-CC---eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCe
Q 003279 726 SVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 798 (834)
Q Consensus 726 sl~~spdg~~Lasgs-Dg---~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg---~I~Iwdl~~~~ 798 (834)
..+|+|||++|+..+ ++ .|++||+.++.. . .+.. ......+.|+|+|+.|+.++.++ .+++.++....
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~---~-~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~ 406 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQV---T-ALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRI 406 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCe---E-EccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCc
Confidence 689999999998776 33 699999987632 1 2222 22346789999999998887655 57777886544
Q ss_pred EEEeccCCCCeEEEEEeCC
Q 003279 799 TLTLSAHDKLVSSLAASTV 817 (834)
Q Consensus 799 ~~~l~~h~~~V~~lafspd 817 (834)
...+..+.+.+...+|+|-
T Consensus 407 ~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eEEeecCCCCCCCCccCCC
Confidence 4456667788888899873
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.9e-14 Score=145.86 Aligned_cols=285 Identities=14% Similarity=0.150 Sum_probs=211.2
Q ss_pred CCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEec-CCCCCeEEEEEcCCCCEEEEEeCC
Q 003279 495 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHD 573 (834)
Q Consensus 495 ~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~-gH~~~V~sl~fSpdg~~Lasgs~D 573 (834)
.+..+..-++|+++|+.|..+++|........ . +-+++.... .|...|.|++|....++|++|+.+
T Consensus 60 NAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~----------k---~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 60 NALQFSHNDRFLASGGDDMHGRVWNVDELMVR----------K---TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred ceeeeccCCeEEeecCCcceeeeechHHHHhh----------c---CCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 33444445699999999999999954332111 0 112233332 466899999999999999999999
Q ss_pred CcEEEEeCCCCeEEEEecc--CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee--eeeccCCCCeEEEEEccCC
Q 003279 574 KKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSK 649 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~--h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i--~~~~~h~~~V~sl~fspdg 649 (834)
++|.+.|+++.+.+..+.. ..+.|+.+..+|..+.|++.+.++.|.+||++.....+ ............+.|+|..
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 9999999999988877742 23489999999999999999999999999998654322 2233345667889999999
Q ss_pred CcEEEEEeCCCcEEEEECCCCce-eeEeec-------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEE-EEEeCC
Q 003279 650 EDLLCSCDNNSEIRYWSINNGSC-AGVFKC-------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCR-LKLQGH 720 (834)
Q Consensus 650 ~~llasgs~Dg~I~lwDl~s~~~-i~~~~~-------~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~-~~l~~h 720 (834)
..+|++.+..+-+.+||++.... +..+.. ...-..+.|+|.|+.|++.-....-.+||+-+..+. ..+. |
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~ 285 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-H 285 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-C
Confidence 99999999999999999986432 211111 122367899999999999888888888998875543 3333 3
Q ss_pred C-------CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC--------------------ceeEEEeecCCCceEEEE
Q 003279 721 K-------NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK--------------------GECIHELSCTGNKFHSCV 772 (834)
Q Consensus 721 ~-------~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~--------------------~~~i~~~~~~~~~I~sva 772 (834)
. ..+.+++|..|-. +++|+ +-.|++|.+..... ...+..+.+|...++.+.
T Consensus 286 N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVR 364 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVR 364 (609)
T ss_pred CCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccccee
Confidence 2 2456778865544 78888 55899999853210 123446788999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEEC
Q 003279 773 FHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 773 fspdg~~L~sgs~dg~I~Iwdl 794 (834)
|+|....|++.+-.+.++||.-
T Consensus 365 F~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 365 FSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ecCCcceEeccchhhheecccc
Confidence 9999999999999999999964
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-13 Score=151.74 Aligned_cols=239 Identities=15% Similarity=0.241 Sum_probs=172.5
Q ss_pred EcCCCCEEEE--EeCCCcEEEEeCCC-CeEE----EEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCCc---
Q 003279 560 FSPDGKLLAT--GGHDKKAVLWCTES-FTVK----STLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDY--- 628 (834)
Q Consensus 560 fSpdg~~Las--gs~Dg~I~IWd~~t-~~~~----~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s~~~--- 628 (834)
|+.+.+++|+ ++..|.|-||++.. |+.. -.+ .....|+++.|.| |...|++++.||.|++|.+..+..
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 3344556654 45578999999874 2222 122 2445799999999 778999999999999999976543
Q ss_pred ---eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003279 629 ---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYIS 704 (834)
Q Consensus 629 ---~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~ 704 (834)
+...+..|...|+++.|+|-...+|++++.|.+|++||+.+++....+. |.+.|..++|+|+|+.+++.+.||+|+
T Consensus 666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR 745 (1012)
T ss_pred cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence 3467788999999999999888899999999999999999988776665 467799999999999999999999999
Q ss_pred EEECCCCe-EEEEEeCCC-CCEEEEEEcCCCCEEEEEe-CC----eEEEEEcCCCCCceeEEEeec-CCCceEEEEEeCC
Q 003279 705 ILDVETQV-CRLKLQGHK-NQVHSVCWNTSGEYLASVS-DE----LVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPT 776 (834)
Q Consensus 705 iwDl~t~~-~~~~l~~h~-~~I~sl~~spdg~~Lasgs-Dg----~I~IwDl~s~~~~~~i~~~~~-~~~~I~svafspd 776 (834)
+|+.++++ .+..-.+.. ..--.|.|.-||+++++.+ |. .|.+||..+-.. ..+.+... ....+.--.+.+|
T Consensus 746 Vy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~-~pl~t~~lDvaps~LvP~YD~D 824 (1012)
T KOG1445|consen 746 VYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL-RPLYTQVLDVAPSPLVPHYDYD 824 (1012)
T ss_pred EeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC-CcceeeeecccCccccccccCC
Confidence 99998764 343333211 2234677888999888876 54 788998776431 12222111 1112222345666
Q ss_pred CCEE-EEEEcCCeEEEEECCCCeEE
Q 003279 777 FPSL-LVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 777 g~~L-~sgs~dg~I~Iwdl~~~~~~ 800 (834)
...| ++|-.|..|++|.+-.....
T Consensus 825 s~~lfltGKGD~~v~~yEv~~esPy 849 (1012)
T KOG1445|consen 825 SNVLFLTGKGDRFVNMYEVIYESPY 849 (1012)
T ss_pred CceEEEecCCCceEEEEEecCCCce
Confidence 6554 45566779999998655443
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=157.29 Aligned_cols=207 Identities=14% Similarity=0.133 Sum_probs=166.3
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEE
Q 003279 565 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 644 (834)
Q Consensus 565 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~ 644 (834)
..|+.++.||.+.|.+ +.++....+..|.+.|.|-.|+|||.-|+|+++||.|++|.-.. ....++.....+|.|++
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG--MLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG--MLRSTVVQNEESIRCAR 152 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc--hHHHHHhhcCceeEEEE
Confidence 4688888999999987 66788888999999999999999999999999999999998653 22344555678999999
Q ss_pred EccCCCcEEEEEeCCCcEEEEECCCCc-eeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCC
Q 003279 645 FHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 723 (834)
Q Consensus 645 fspdg~~llasgs~Dg~I~lwDl~s~~-~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~ 723 (834)
|.|+.+.++++.+ +.+.+=.+.... .++--.|.+-|.++.|++..+.+++|+.|-..+|||.. |..++.-..|..+
T Consensus 153 W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA 229 (737)
T ss_pred ECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccc
Confidence 9999998887764 456665555443 44444456668999999999999999999999999976 4566666679999
Q ss_pred EEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003279 724 VHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 792 (834)
Q Consensus 724 I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iw 792 (834)
|++++|.|+ +.++.++-+++++=.. ..+.|..++|++||..+++|+..|.+.+-
T Consensus 230 ITSva~npd-~~~~v~S~nt~R~~~p--------------~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 230 ITSVAFNPE-KDYLLWSYNTARFSSP--------------RVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeeeeccc-cceeeeeeeeeeecCC--------------CccceEEEEEcCCCceeeccccCceEEEe
Confidence 999999999 6677777666662222 34678899999999999999999966543
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.3e-14 Score=152.73 Aligned_cols=244 Identities=15% Similarity=0.194 Sum_probs=165.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE----EEEeccCCCCeEEEEEC-----CCCCEEEEEeCCCeEEEEecC
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTV----KSTLEEHTQWITDVRFS-----PSLSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~----~~~l~~h~~~I~~l~fs-----pdg~~Latgs~Dg~I~IWDl~ 624 (834)
.+....++-.|++|+..-. ..+++|+...+.. +....-.....+|-+|+ +++--|+.|-..|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 3555556667777766543 4688888764222 11111111223444442 346668888888999998876
Q ss_pred CCCceeeee----ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcC
Q 003279 625 NPDYSLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 625 s~~~~i~~~----~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d 700 (834)
..+. .+.+ .-....|+|+.|-|.++.+|..+-.+|.+++||.+- .......+....+++..+.+....
T Consensus 204 ~~~~-sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~t~p~~~~~k~~~~f~i~t~k 275 (636)
T KOG2394|consen 204 NFEV-SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGATAPSYQALKDGDQFAILTSK 275 (636)
T ss_pred hhHH-HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccCCCCcccccCCCCeeEEeeee
Confidence 5221 1111 112478999999999999998999999999999831 111222222233444444333321
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003279 701 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 779 (834)
Q Consensus 701 g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~ 779 (834)
+. .+..++..+.--.+.|..++|+|||++||+.+ ||.++|||+.+. +.+...+.--+...||+|+|||++
T Consensus 276 sk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---eLlg~mkSYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 276 SK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---ELLGVMKSYFGGLLCVCWSPDGKY 346 (636)
T ss_pred cc------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---HHHHHHHhhccceEEEEEcCCccE
Confidence 11 11133333333456899999999999999999 999999999886 444445555678899999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEe
Q 003279 780 LLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS 815 (834)
Q Consensus 780 L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafs 815 (834)
|++|+.|.-|.||.+..++++ +-.+|+.+|+.|+|.
T Consensus 347 IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 999999999999999999998 667999999999998
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-12 Score=133.71 Aligned_cols=232 Identities=15% Similarity=0.229 Sum_probs=164.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEE-eCC------CeEEEEecCCCC
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SAD------RTVRVWDTENPD 627 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~D------g~I~IWDl~s~~ 627 (834)
..+++|+.|...+++|..+ -.+||+++..+.......+.+.+.-+...-..++|+.. +.+ ..|.|||-.. .
T Consensus 8 ~lsvs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k-~ 85 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK-E 85 (346)
T ss_pred eeEEEEccCCceEEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc-C
Confidence 4559999999999988765 48999988755543333233322222222233455543 332 4799999443 3
Q ss_pred ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC-CCceeeEeec---CCCeeEEEEecCCCEEEEEEc-CCe
Q 003279 628 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKC---QSGATQMRFQPRLGRILAAAI-ENY 702 (834)
Q Consensus 628 ~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~-s~~~i~~~~~---~~~i~~l~~sp~g~~ll~~s~-dg~ 702 (834)
.++..+. ...+|.+|.+.++ .++++- ++.|+||... +-+.+..+.. +.+..+++-+.....|+.-+. -|.
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~--riVvvl--~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRD--RIVVVL--ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred cEEEEEE-eccceeeEEEcCC--eEEEEe--cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 3444444 6788999999976 244333 7899999987 4555555554 344444444444444444443 489
Q ss_pred EEEEECCCCeE--EEEEeCCCCCEEEEEEcCCCCEEEEEe-CC-eEEEEEcCCCCCceeEEEeec--CCCceEEEEEeCC
Q 003279 703 ISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSC--TGNKFHSCVFHPT 776 (834)
Q Consensus 703 I~iwDl~t~~~--~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg-~I~IwDl~s~~~~~~i~~~~~--~~~~I~svafspd 776 (834)
|.|.|+...+. ...+..|.+.|.|++.+-+|..+|+++ .| .|+|||..++ ..+.++.. ....|.+++|+|+
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g---~~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG---TLLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC---cEeeeeecCCchheEEEEEeCCC
Confidence 99999987655 477888999999999999999999999 66 6999999999 56666654 3467999999999
Q ss_pred CCEEEEEEcCCeEEEEECCC
Q 003279 777 FPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 777 g~~L~sgs~dg~I~Iwdl~~ 796 (834)
..+|++++..|+|+||.++.
T Consensus 238 ~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 238 SSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred ccEEEEEcCCCeEEEEEeec
Confidence 99999999999999998865
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-11 Score=136.10 Aligned_cols=261 Identities=12% Similarity=0.126 Sum_probs=183.0
Q ss_pred CeEEEEEcCCCCEEEEEeC----CCcEEEEeCCCC--e--EEEEeccCCCCeEEEEECCCCCEEEEEeC-CCeEEEEecC
Q 003279 554 KVESCHFSPDGKLLATGGH----DKKAVLWCTESF--T--VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTE 624 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~----Dg~I~IWd~~t~--~--~~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~ 624 (834)
.-..++++|++++|+++.. ++.|..|++... . .+............++++|++++|+++.. +|.|.++++.
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 3567899999999999877 468999887653 3 33444434455678999999999999875 8999999998
Q ss_pred CCCceeee--ec-----------cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc--eee----EeecCCCeeEE
Q 003279 625 NPDYSLRT--FT-----------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAG----VFKCQSGATQM 685 (834)
Q Consensus 625 s~~~~i~~--~~-----------~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~--~i~----~~~~~~~i~~l 685 (834)
........ .. .......++.|+|++++++++.-....|.+|++.... ... .+....+...+
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~ 197 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHL 197 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEE
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEE
Confidence 75322211 11 1235578999999999887766556689999997655 322 22346778999
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECC--CCe--EEEEEeC------CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcC-C
Q 003279 686 RFQPRLGRILAAAI-ENYISILDVE--TQV--CRLKLQG------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIG-S 751 (834)
Q Consensus 686 ~~sp~g~~ll~~s~-dg~I~iwDl~--t~~--~~~~l~~------h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~-s 751 (834)
.|+|+++++++..+ ++.|.+|++. ++. .+..+.. .......|+++|||++|+++. ++.|.+|++. .
T Consensus 198 ~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~ 277 (345)
T PF10282_consen 198 AFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA 277 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT
T ss_pred EEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC
Confidence 99999999888876 5789999988 442 2223321 112678999999999999887 7799999994 3
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEC--CCCeEEEec--cCCCCeEEEEE
Q 003279 752 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNM--TENKTLTLS--AHDKLVSSLAA 814 (834)
Q Consensus 752 ~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d-g~I~Iwdl--~~~~~~~l~--~h~~~V~~laf 814 (834)
......+..+.........++++|+|++|+++..+ +.|.+|++ ++|.+.... ..-....||.|
T Consensus 278 ~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 278 TGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 33446666677667778999999999999998864 48888865 567655332 23445666665
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.5e-13 Score=152.68 Aligned_cols=223 Identities=17% Similarity=0.179 Sum_probs=153.1
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEE-EEeCCCeEEEEe
Q 003279 547 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWD 622 (834)
Q Consensus 547 ~l~gH~~~V~sl~fSpdg~~Lasgs~D---g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~La-tgs~Dg~I~IWD 622 (834)
.+..+...|.+.+|+|||+.|+.++.+ ..|++||+.+++... +....+.+.+.+|+|||+.|+ +.+.++...||.
T Consensus 190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 268 (427)
T PRK02889 190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT 268 (427)
T ss_pred EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence 344677789999999999999887753 359999999887643 333445677899999999886 467788766666
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE--CCCCceeeEeecCCCeeEEEEecCCCEEEEEEcC
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS--INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwD--l~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d 700 (834)
++........+..+...+....|+|||+.+++++..++...+|. +.++................|+|+|++|+.++.+
T Consensus 269 ~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~ 348 (427)
T PRK02889 269 VNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRV 348 (427)
T ss_pred EECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEcc
Confidence 54322224555556666778899999998887766566666664 4555443333222334568899999999888765
Q ss_pred C---eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003279 701 N---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVF 773 (834)
Q Consensus 701 g---~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~svaf 773 (834)
+ .|.+||+.++.... +.. ......+.|+|||++|+.++ .+ .+++.++. + .....+..+.+.+...+|
T Consensus 349 ~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g---~~~~~l~~~~g~~~~p~w 422 (427)
T PRK02889 349 GGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G---RIKQRLSVQGGDVREPSW 422 (427)
T ss_pred CCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-C---CceEEeecCCCCCCCCcc
Confidence 4 69999999886543 322 23446789999999988877 33 46666663 3 233344445566777788
Q ss_pred eCC
Q 003279 774 HPT 776 (834)
Q Consensus 774 spd 776 (834)
+|-
T Consensus 423 sp~ 425 (427)
T PRK02889 423 GPF 425 (427)
T ss_pred CCC
Confidence 764
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-13 Score=158.40 Aligned_cols=248 Identities=15% Similarity=0.210 Sum_probs=177.1
Q ss_pred CCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEeCC-----CCeEEEEecc-------CCCCeEEEEECCCCCEEEEEeCC
Q 003279 550 ASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTE-----SFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSAD 615 (834)
Q Consensus 550 gH~~~V~sl~fSp--dg~~Lasgs~Dg~I~IWd~~-----t~~~~~~l~~-------h~~~I~~l~fspdg~~Latgs~D 615 (834)
.....|+.+.+-. |..+|++|+.||.|+||+-. +.+.+..+.+ ..+.=.-+.|.....+|++++.-
T Consensus 1107 ~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~ 1186 (1387)
T KOG1517|consen 1107 FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDV 1186 (1387)
T ss_pred CCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCe
Confidence 3456799998866 55689999999999999532 2233333221 11111345677666677777778
Q ss_pred CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc---eeeEee-cCCC--eeEEEEec
Q 003279 616 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFK-CQSG--ATQMRFQP 689 (834)
Q Consensus 616 g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~---~i~~~~-~~~~--i~~l~~sp 689 (834)
..|+|||......+...-.+....|+++.-+-....++++|-.||.|++||.+... .+..++ +... |..+.+.+
T Consensus 1187 r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~ 1266 (1387)
T KOG1517|consen 1187 RSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQR 1266 (1387)
T ss_pred eEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeec
Confidence 89999999986655555555667788887766666788899999999999998643 233333 2333 88889988
Q ss_pred CCC-EEEEEEcCCeEEEEECCCCeE--EEEEeCCC---CCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEE---
Q 003279 690 RLG-RILAAAIENYISILDVETQVC--RLKLQGHK---NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE--- 760 (834)
Q Consensus 690 ~g~-~ll~~s~dg~I~iwDl~t~~~--~~~l~~h~---~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~--- 760 (834)
.|- .|++|+.+|.|++||++.... ...+..|- +.++++..++...++|+|+.+.|+||++..... ..+..
T Consensus 1267 ~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l-~~~k~n~~ 1345 (1387)
T KOG1517|consen 1267 QGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQL-NIIKYNPG 1345 (1387)
T ss_pred CCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhh-cccccCcc
Confidence 554 599999999999999998422 22222222 358999999999999999999999999876422 11111
Q ss_pred -eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 003279 761 -LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 798 (834)
Q Consensus 761 -~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~ 798 (834)
.....+.+.|++|||..-.+++|..|..|.||......
T Consensus 1346 F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1346 FMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 11124567999999999999999999999999876543
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.3e-13 Score=143.17 Aligned_cols=282 Identities=13% Similarity=0.117 Sum_probs=186.1
Q ss_pred CCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 003279 490 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT 569 (834)
Q Consensus 490 ~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Las 569 (834)
+..++...++.....++++|+.++.+-+|...+.... + ...-.......+...+.+.+|...|..++|+||+.++++
T Consensus 64 H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~-~--~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s 140 (434)
T KOG1009|consen 64 HTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF-D--ADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVS 140 (434)
T ss_pred CcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc-c--ccchhhhCccceEEEEEecccccchhhhhccCCCceeee
Confidence 4455555555666689999999999999977652111 0 000011113346667888999999999999999999999
Q ss_pred EeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCC
Q 003279 570 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 649 (834)
Q Consensus 570 gs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg 649 (834)
++.|..+++||+..|.....+.+|...|..++|.|-+.++++-+.|...+++.+..... +.++...
T Consensus 141 ~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~-----------~~~~~~~--- 206 (434)
T KOG1009|consen 141 GSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV-----------IKRHGLD--- 206 (434)
T ss_pred eeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeee-----------eeeeeee---
Confidence 99999999999999999999999999999999999999999999998777777654321 1111110
Q ss_pred CcEEEEEeCC---CcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc----CC-----eEEEEECCC-CeEEEE
Q 003279 650 EDLLCSCDNN---SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI----EN-----YISILDVET-QVCRLK 716 (834)
Q Consensus 650 ~~llasgs~D---g~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~----dg-----~I~iwDl~t-~~~~~~ 716 (834)
.+.+-.+.. ...++|.=++.+ .-...++|+|+|..+++.+. ++ ..++|+-.. .++...
T Consensus 207 -~m~~~~~~~~e~~s~rLfhDeTlk--------sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~ 277 (434)
T KOG1009|consen 207 -IMPAKAFNEREGKSTRLFHDETLK--------SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAAR 277 (434)
T ss_pred -EeeecccCCCCcceeeeeecCchh--------hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceee
Confidence 011111111 122333222221 22445667777776665442 12 234554332 234444
Q ss_pred EeCCCCCEEEEEEcC------------------CCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003279 717 LQGHKNQVHSVCWNT------------------SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 778 (834)
Q Consensus 717 l~~h~~~I~sl~~sp------------------dg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~ 778 (834)
+.....++..+.|+| .+..++.++.+.|+|||........++ -..|-..|+.++|+++|.
T Consensus 278 lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v--~nihy~~iTDiaws~dg~ 355 (434)
T KOG1009|consen 278 LPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVV--DNIHYSAITDIAWSDDGS 355 (434)
T ss_pred cCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEE--eeeeeeeecceeecCCCc
Confidence 444444444444443 344567777889999999886432222 344678999999999999
Q ss_pred EEEEEEcCCeEEEEECCCCeE
Q 003279 779 SLLVIGCYETLELWNMTENKT 799 (834)
Q Consensus 779 ~L~sgs~dg~I~Iwdl~~~~~ 799 (834)
.+++.+.||...+..++..+.
T Consensus 356 ~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 356 VLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred EEEEeccCCceEEEEEcchhc
Confidence 999999999766666655443
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-13 Score=140.89 Aligned_cols=228 Identities=18% Similarity=0.289 Sum_probs=177.8
Q ss_pred eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC--ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 003279 590 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 667 (834)
Q Consensus 590 l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~--~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl 667 (834)
+....++|+|.+|++|...+|++-....|.||...... ....++..|...|++|+|.|..++|+ +|+.|..-++|..
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv-tcs~drnayVw~~ 84 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV-TCSHDRNAYVWTQ 84 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee-EccCCCCcccccc
Confidence 33455789999999999999999999999999988765 35688899999999999999977555 9999999999999
Q ss_pred -CCCc---eeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEE----EEEeCCCCCEEEEEEcCCCCEEEEE
Q 003279 668 -NNGS---CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR----LKLQGHKNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 668 -~s~~---~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~----~~l~~h~~~I~sl~~spdg~~Lasg 739 (834)
..++ .+..+.++..++++.|+|.++.|++++....|.||-.+....- ..-+.+...|+++.|+|++-+|++|
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 4443 2334456788999999999999999999999999887654221 2223467789999999999999999
Q ss_pred e-CCeEEEEEcC-----CCC----------CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe--EEE
Q 003279 740 S-DELVRVWSIG-----SGS----------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--TLT 801 (834)
Q Consensus 740 s-Dg~I~IwDl~-----s~~----------~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~--~~~ 801 (834)
+ |+..+||..- ... ....+.++....+.+..+.|+|+|..|+..+.|..+.+-|..... +..
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccc
Confidence 9 9999988642 110 012334454567889999999999999999999999999987765 333
Q ss_pred eccCCCCeEEEEEeCCC
Q 003279 802 LSAHDKLVSSLAASTVN 818 (834)
Q Consensus 802 l~~h~~~V~~lafspdg 818 (834)
+....-+..++.|-.+.
T Consensus 245 ~~~~~lP~ls~~~ise~ 261 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISEN 261 (361)
T ss_pred hhhccCCceeeEeecCC
Confidence 33333666777765543
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-13 Score=143.41 Aligned_cols=261 Identities=15% Similarity=0.209 Sum_probs=199.9
Q ss_pred CCCCeEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCeEEEE------eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 551 STSKVESCHFSPDGK--LLATGGHDKKAVLWCTESFTVKST------LEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 551 H~~~V~sl~fSpdg~--~Lasgs~Dg~I~IWd~~t~~~~~~------l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
-...|+.++|.-|++ .|...+.|..+..+++....+... .....++|..++.. ...|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 345688888877665 344444666777777766555433 34456677777765 33788889999999999
Q ss_pred cCCCCc---eeeeeccCCCCeEEEEEccCCCcEEEEEeCC--CcEEEEECCCCceeeEeec----------CCCeeEEEE
Q 003279 623 TENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKC----------QSGATQMRF 687 (834)
Q Consensus 623 l~s~~~---~i~~~~~h~~~V~sl~fspdg~~llasgs~D--g~I~lwDl~s~~~i~~~~~----------~~~i~~l~~ 687 (834)
...+.. ++..+. ....+..+.-++...+++++|+.. ..+.+||++..+.+..-+. +--++.+.|
T Consensus 132 ~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred ccCCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 985431 122333 235677788888888899999998 8999999998866654432 123677888
Q ss_pred ecC--CCEEEEEEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEE-Eee
Q 003279 688 QPR--LGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH-ELS 762 (834)
Q Consensus 688 sp~--g~~ll~~s~dg~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~-~~~ 762 (834)
.+. ...|++++.-+.+++||.+.+ +++..|.-...+|+++...|++++|+++. -+.+..||++.+ ..+. .+.
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~---kl~g~~~k 287 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG---KLLGCGLK 287 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc---eeeccccC
Confidence 887 788999999999999999987 67888887888999999999999999999 889999999988 3333 377
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCC
Q 003279 763 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV 817 (834)
Q Consensus 763 ~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspd 817 (834)
+-.+.|.++..+|.+++|++++-|..|+|+|+++.+++.-..-...+++|-+.++
T Consensus 288 g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 288 GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 7789999999999999999999999999999999777644444556677766543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.7e-13 Score=143.80 Aligned_cols=191 Identities=14% Similarity=0.105 Sum_probs=149.2
Q ss_pred EEEEEccCCCcEEEEEeCCCcEEEEECCCCc-eeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 003279 641 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 719 (834)
Q Consensus 641 ~sl~fspdg~~llasgs~Dg~I~lwDl~s~~-~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~ 719 (834)
.+++|+.+|. .+++++.||++|+|+..+.. ......++..|.++.|+||++.|++.+.| ..+||+++++.++.....
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 6789998866 78899999999999966544 44555678999999999999999999999 999999999977666552
Q ss_pred --CCCCEEEEEEcCCC---CEEEEEe---CCeEEEEEcCCCCCce--eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003279 720 --HKNQVHSVCWNTSG---EYLASVS---DELVRVWSIGSGSKGE--CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 789 (834)
Q Consensus 720 --h~~~I~sl~~spdg---~~Lasgs---Dg~I~IwDl~s~~~~~--~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I 789 (834)
.+..+..+.|+.|+ .+++.+. -+.|+.||+....... ...........|.+++.+++|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 23345677888776 3333333 4577777775443211 222333345689999999999999999999999
Q ss_pred EEEECCCCeEEE--eccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 790 ELWNMTENKTLT--LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 790 ~Iwdl~~~~~~~--l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
-|++..+-+.+. ...|...|+.+.|+||.+++++.+.|..+.|.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 999999988773 44899999999999999999998888877653
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.9e-13 Score=151.33 Aligned_cols=220 Identities=17% Similarity=0.160 Sum_probs=155.0
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEE-eCCC--eEEEE
Q 003279 548 IPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADR--TVRVW 621 (834)
Q Consensus 548 l~gH~~~V~sl~fSpdg~~Lasgs~---Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg--~I~IW 621 (834)
+..+...+.+.+|||||+.|+..+. +..|++|++.+++... +....+.+..++|+|||+.|+.. +.+| .|++|
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence 3456678999999999999987653 3579999998876443 22333445678999999988865 4444 58899
Q ss_pred ecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc--EEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc
Q 003279 622 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 699 (834)
Q Consensus 622 Dl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~--I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~ 699 (834)
|+.++. ...+..+...+....|+|+++.++++...++. |+++|+.++................|+|+|++|++.+.
T Consensus 273 d~~tg~--~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 273 DLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred ECCCCC--EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEc
Confidence 998765 34445555678899999999988777765554 55557776655443333344567899999999988765
Q ss_pred C---CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CC---eEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003279 700 E---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCV 772 (834)
Q Consensus 700 d---g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg---~I~IwDl~s~~~~~~i~~~~~~~~~I~sva 772 (834)
+ ..|.+||+.++... .+.. ........|+|||++|+.++ ++ .+.++++... ....+..+...+...+
T Consensus 351 ~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~----~~~~l~~~~~~~~~p~ 424 (429)
T PRK03629 351 NGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR----FKARLPATDGQVKFPA 424 (429)
T ss_pred cCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC----CeEECccCCCCcCCcc
Confidence 4 36889999888644 3332 12345688999999998887 54 4777787543 3445556677788888
Q ss_pred EeCC
Q 003279 773 FHPT 776 (834)
Q Consensus 773 fspd 776 (834)
|+|-
T Consensus 425 Wsp~ 428 (429)
T PRK03629 425 WSPY 428 (429)
T ss_pred cCCC
Confidence 8873
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.2e-11 Score=134.27 Aligned_cols=267 Identities=14% Similarity=0.182 Sum_probs=183.8
Q ss_pred EEEEeCC----CcEEEEeC--CCCeEE--EEeccCCCCeEEEEECCCCCEEEEEeC----CCeEEEEecCCC--Cc-eee
Q 003279 567 LATGGHD----KKAVLWCT--ESFTVK--STLEEHTQWITDVRFSPSLSRLATSSA----DRTVRVWDTENP--DY-SLR 631 (834)
Q Consensus 567 Lasgs~D----g~I~IWd~--~t~~~~--~~l~~h~~~I~~l~fspdg~~Latgs~----Dg~I~IWDl~s~--~~-~i~ 631 (834)
+++|+.+ +.|++|++ ++++.. ..+ ........++++|++++|+++.. ++.|..|++... .. .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4566666 68998877 455443 222 23445678999999999999887 469999998864 22 122
Q ss_pred eeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-CceeeE---ee-----------cCCCeeEEEEecCCCEEEE
Q 003279 632 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGV---FK-----------CQSGATQMRFQPRLGRILA 696 (834)
Q Consensus 632 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s-~~~i~~---~~-----------~~~~i~~l~~sp~g~~ll~ 696 (834)
...........++++|+++.++++...+|.|.++++.. +..... +. ......++.++|+++++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 33324456678999999998888777899999999987 443332 21 1345789999999999988
Q ss_pred EEcC-CeEEEEECCCCe--E--EEEEe-CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCceeEEEeecC---
Q 003279 697 AAIE-NYISILDVETQV--C--RLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCT--- 764 (834)
Q Consensus 697 ~s~d-g~I~iwDl~t~~--~--~~~l~-~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~-~~~~~i~~~~~~--- 764 (834)
.... ..|.+|++.... . ...+. ........++|+|+++++++.. ++.|.+|++... .....+..+...
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 8764 689999997654 2 22222 3456788999999999998877 789999999822 122333333321
Q ss_pred ---CCceEEEEEeCCCCEEEEEEc-CCeEEEEECC--CCeEE---EeccCCCCeEEEEEeCCCCEEEEEe-cCCcEEEeC
Q 003279 765 ---GNKFHSCVFHPTFPSLLVIGC-YETLELWNMT--ENKTL---TLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 834 (834)
Q Consensus 765 ---~~~I~svafspdg~~L~sgs~-dg~I~Iwdl~--~~~~~---~l~~h~~~V~~lafspdg~~LaSgs-~DG~I~IWd 834 (834)
......++++|||++|+++.. .+.|.+|+++ ++++. .+.......+.++++|+|++|++++ .++.|.+|+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 125788999999999998775 4589999983 34433 2333345689999999999998887 566788874
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-12 Score=142.51 Aligned_cols=267 Identities=18% Similarity=0.276 Sum_probs=175.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEE-----eCC-----CeEEEEe
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-----SAD-----RTVRVWD 622 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-----s~D-----g~I~IWD 622 (834)
.++...++|++|+++|.+. +..|+|++..++..+.+...- .++++.|+|-+.+|.|= ..+ -.+.+|+
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 3477889999999888775 578999999988655444333 78999999999988762 112 3577999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCe--------------------
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-------------------- 682 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i-------------------- 682 (834)
+++ ......+......-+++.|+.|.. +. +--..+.+.+|++.+.+.+..--+..++
T Consensus 112 vet-~~~~s~~q~k~Q~~W~~qfs~dEs-l~-arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 112 VET-GVQRSQIQKKMQNGWVPQFSIDES-LA-ARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred ecc-ceehhheehhhhcCcccccccchh-hh-hhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccC
Confidence 988 332333322222225777777643 21 1112445666665543221111111112
Q ss_pred --------------------------------eEEEEecCCCEEEEE-Ec--C---------CeEEEEECCCCeEEEEEe
Q 003279 683 --------------------------------TQMRFQPRLGRILAA-AI--E---------NYISILDVETQVCRLKLQ 718 (834)
Q Consensus 683 --------------------------------~~l~~sp~g~~ll~~-s~--d---------g~I~iwDl~t~~~~~~l~ 718 (834)
..+.|++.+.-|++. +. | ..++++++....++..+.
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~ 268 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL 268 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence 234455544433322 21 2 257777777445555554
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEE
Q 003279 719 GHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELW 792 (834)
Q Consensus 719 ~h~~~I~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg---~I~Iw 792 (834)
..++|++++|+++++-++++. -.++.|||++.. .+.. ...++-+++-|+|.|++|+.+|.++ .|.||
T Consensus 269 -k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvw 341 (566)
T KOG2315|consen 269 -KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----PVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVW 341 (566)
T ss_pred -CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----EeEe--CCCCCccceEECCCCCEEEEeecCCCCCceEEE
Confidence 578999999999998777665 669999998753 4443 3467788999999999999998864 89999
Q ss_pred ECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEec------CCcEEEeC
Q 003279 793 NMTENKTL-TLSAHDKLVSSLAASTVNGMVASASH------DKCVKIWK 834 (834)
Q Consensus 793 dl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~------DG~I~IWd 834 (834)
|+.+.+.+ .+... .-+-+.|+|||.+|+|++. |+.++||+
T Consensus 342 Dv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 342 DVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred eccchhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 99997776 33332 3445889999999998874 78899995
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-12 Score=148.24 Aligned_cols=232 Identities=16% Similarity=0.132 Sum_probs=163.2
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCC
Q 003279 574 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 650 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~ 650 (834)
..|.++|..... ...+..+...+.+.+|+||+++|+.++.+ ..|++||+.++.. ..+..+...+.+++|+|+++
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 368888876443 44555677789999999999999988754 4799999987653 33344556677899999999
Q ss_pred cEEEEEeCCC--cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEEeCCCCCEE
Q 003279 651 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVH 725 (834)
Q Consensus 651 ~llasgs~Dg--~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d-g--~I~iwDl~t~~~~~~l~~h~~~I~ 725 (834)
.++++.+.++ .|++||+.++................|+|+++.|++++.. + .|+++|+.+++.. .+..+...+.
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 8887776554 5999999887655444443445577899999998877653 3 6888898877643 3444556677
Q ss_pred EEEEcCCCCEEEEEe-CC---eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCe
Q 003279 726 SVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 798 (834)
Q Consensus 726 sl~~spdg~~Lasgs-Dg---~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg---~I~Iwdl~~~~ 798 (834)
.+.|+|+|++|+.+. ++ .|.+||+.++.. ..+.. ........|+|++.+|++.+.++ .+++++.....
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~----~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~ 400 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE----RVLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRF 400 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCe----EEccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCce
Confidence 889999999998887 44 789999887521 12221 12234568999999998887765 56777766555
Q ss_pred EEEeccCCCCeEEEEE
Q 003279 799 TLTLSAHDKLVSSLAA 814 (834)
Q Consensus 799 ~~~l~~h~~~V~~laf 814 (834)
...+..+.+.+..++|
T Consensus 401 ~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 401 RARLPLGNGDVREPAW 416 (417)
T ss_pred eeECCCCCCCcCCCCC
Confidence 5455444555655555
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.4e-13 Score=151.94 Aligned_cols=221 Identities=19% Similarity=0.188 Sum_probs=156.5
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEE-EEeCCC--eEE
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVR 619 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs~D---g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~La-tgs~Dg--~I~ 619 (834)
+.+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++... +..+.+...+++|+|||+.|+ +.+.++ .|+
T Consensus 197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy 275 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIY 275 (433)
T ss_pred eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence 3455677789999999999999988743 469999998876543 334455566899999998775 445555 599
Q ss_pred EEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc--EEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEE
Q 003279 620 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 620 IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~--I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~ 697 (834)
+||+.++. +..+..+......++|+||++.++++...+|. |+++|+.+++..............+|+|++++|+..
T Consensus 276 ~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 276 VMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMV 353 (433)
T ss_pred EEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence 99998765 44555565566788999999988877666655 777788777654433333345578999999999887
Q ss_pred EcCC---eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C-C--eEEEEEcCCCCCceeEEEeecCCCceEE
Q 003279 698 AIEN---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-E--LVRVWSIGSGSKGECIHELSCTGNKFHS 770 (834)
Q Consensus 698 s~dg---~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-D-g--~I~IwDl~s~~~~~~i~~~~~~~~~I~s 770 (834)
+.++ .|.+||+.++... .+. +......+.|+|||++|+..+ + + .|+++++... ....+..+.+.+..
T Consensus 354 ~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~----~~~~l~~~~g~~~~ 427 (433)
T PRK04922 354 HGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR----VRQRLVSADGEVRE 427 (433)
T ss_pred ECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEEcccCCCCCCC
Confidence 6543 6999999887655 333 333455789999999888766 2 2 6888887543 33344444556666
Q ss_pred EEEeC
Q 003279 771 CVFHP 775 (834)
Q Consensus 771 vafsp 775 (834)
.+|+|
T Consensus 428 p~wsp 432 (433)
T PRK04922 428 PAWSP 432 (433)
T ss_pred CccCC
Confidence 77776
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.7e-13 Score=136.80 Aligned_cols=277 Identities=17% Similarity=0.313 Sum_probs=189.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-----EEEEeccC------------CCCeEEEEECCCC--CEEEEE
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEH------------TQWITDVRFSPSL--SRLATS 612 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~-----~~~~l~~h------------~~~I~~l~fspdg--~~Latg 612 (834)
.+-|.+|.|..+|.+||+|..+|.|.+|.-+... ....+..| ...|..+.|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4558999999999999999999999999543211 22333333 3458899999864 467778
Q ss_pred eCCCeEEEEecCCCCcee----------------------------------ee-eccCCCCeEEEEEccCCCcEEEEEe
Q 003279 613 SADRTVRVWDTENPDYSL----------------------------------RT-FTGHSTTVMSLDFHPSKEDLLCSCD 657 (834)
Q Consensus 613 s~Dg~I~IWDl~s~~~~i----------------------------------~~-~~~h~~~V~sl~fspdg~~llasgs 657 (834)
+.|++|++|.+....... +. -..|...|.+|.++.|...++ ++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SA- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SA- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ec-
Confidence 899999999886432110 11 124788899999999988665 44
Q ss_pred CCCcEEEEECCCC-ceeeEeec--------CCCeeEEEEecC-CCEEEEEEcCCeEEEEECCCCeE------EEE-----
Q 003279 658 NNSEIRYWSINNG-SCAGVFKC--------QSGATQMRFQPR-LGRILAAAIENYISILDVETQVC------RLK----- 716 (834)
Q Consensus 658 ~Dg~I~lwDl~s~-~~i~~~~~--------~~~i~~l~~sp~-g~~ll~~s~dg~I~iwDl~t~~~------~~~----- 716 (834)
+|-.|.+|+++-- .+...... ..-|++..|+|. .+.++..++.|.|++.|++.... +..
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 4889999998743 22222222 123788999995 45677778889999999984311 111
Q ss_pred -----EeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCC------------C---ceEEEEEeCC
Q 003279 717 -----LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG------------N---KFHSCVFHPT 776 (834)
Q Consensus 717 -----l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~------------~---~I~svafspd 776 (834)
|.+--..|..+.|+++|+|+++-+--+|++||+.... +++.++..|. . .-..|+|+.+
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~--~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA--KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC--CcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 1112236788999999999998887899999996543 3444444332 1 1256899999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEE--Eec--------------------cC-------------CCCeEEEEEeCCCCEE
Q 003279 777 FPSLLVIGCYETLELWNMTENKTL--TLS--------------------AH-------------DKLVSSLAASTVNGMV 821 (834)
Q Consensus 777 g~~L~sgs~dg~I~Iwdl~~~~~~--~l~--------------------~h-------------~~~V~~lafspdg~~L 821 (834)
+.++++|+..+.+++|++..|... ++. +. ...|...+|+|....|
T Consensus 341 ~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~i 420 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSI 420 (433)
T ss_pred cceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCcccee
Confidence 999999999999999996544322 000 00 1124456899999999
Q ss_pred EEEecCCcEEEe
Q 003279 822 ASASHDKCVKIW 833 (834)
Q Consensus 822 aSgs~DG~I~IW 833 (834)
|.+.... ++||
T Consensus 421 a~aatnn-lyif 431 (433)
T KOG1354|consen 421 AVAATNN-LYIF 431 (433)
T ss_pred eeeecCc-eEEe
Confidence 8887654 5544
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-12 Score=146.77 Aligned_cols=221 Identities=13% Similarity=0.121 Sum_probs=157.9
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEE-EEeCCCe--EE
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRT--VR 619 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs~---Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~La-tgs~Dg~--I~ 619 (834)
+.+..|...|.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+.+.+|+|||+.|+ +.+.++. |+
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence 445578888999999999999988764 468999999887654 4555667788999999998775 5555554 77
Q ss_pred EEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC--cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEE
Q 003279 620 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 620 IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg--~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~ 697 (834)
+||+.++. ...+..+........|+||++.++++...+| .|++||+..+...........+....|+|+++.|+..
T Consensus 274 ~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 274 TMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFT 351 (435)
T ss_pred EEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEE
Confidence 77887654 4556666666778999999998877665544 6888898877655544444556778999999999887
Q ss_pred EcC---CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--C-----CeEEEEEcCCCCCceeEEEeecCCCc
Q 003279 698 AIE---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-----ELVRVWSIGSGSKGECIHELSCTGNK 767 (834)
Q Consensus 698 s~d---g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--D-----g~I~IwDl~s~~~~~~i~~~~~~~~~ 767 (834)
..+ ..|.+||+..+.. ..+. ....+..+.|+|||+.|+... . ..++++|+..+. ...+. ....
T Consensus 352 ~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~----~~~l~-~~~~ 424 (435)
T PRK05137 352 KQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN----EREVP-TPGD 424 (435)
T ss_pred EcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc----eEEcc-CCCC
Confidence 754 3688899866543 3333 233567889999999887755 2 257888886642 22333 2334
Q ss_pred eEEEEEeCC
Q 003279 768 FHSCVFHPT 776 (834)
Q Consensus 768 I~svafspd 776 (834)
+...+|+|-
T Consensus 425 ~~~p~Wsp~ 433 (435)
T PRK05137 425 ASDPAWSPL 433 (435)
T ss_pred ccCcccCCC
Confidence 566677763
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.4e-12 Score=131.97 Aligned_cols=231 Identities=13% Similarity=0.174 Sum_probs=169.8
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee-eeeccCCCCeEEEEEccCCCcEEEEEeCC------CcEEEEECC
Q 003279 596 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSIN 668 (834)
Q Consensus 596 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i-~~~~~h~~~V~sl~fspdg~~llasgs~D------g~I~lwDl~ 668 (834)
....++|+.|...+++|..+| .+||+++.-+... +.+....-.+..+-|- .+.+..+|+.+ ..|.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence 345699999999999987776 8999987532211 1111111222222232 24455555544 479999988
Q ss_pred CCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC-CeEEEEEeC--CCCCEEEEEEcCCCCEEEEEe--CCe
Q 003279 669 NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQG--HKNQVHSVCWNTSGEYLASVS--DEL 743 (834)
Q Consensus 669 s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t-~~~~~~l~~--h~~~I~sl~~spdg~~Lasgs--Dg~ 743 (834)
..+++.++....+|..+.+.++ .++.-.++.|+||...+ .+.++.+.. ....+.+++-..+..+||.-+ -|.
T Consensus 84 k~~~i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 84 KERCIIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred cCcEEEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 8899999999999999999876 45555679999999884 455555543 233455555444556777655 789
Q ss_pred EEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEE-Eec--cCCCCeEEEEEeCCCC
Q 003279 744 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLS--AHDKLVSSLAASTVNG 819 (834)
Q Consensus 744 I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg-~I~Iwdl~~~~~~-~l~--~h~~~V~~lafspdg~ 819 (834)
|.|-|+...... .-..+..|...|.+++++-+|..||+++..| -|+|||..+|+.+ .+. .....|.+++|||++.
T Consensus 161 vQi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 161 VQIVDLASTKPN-APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred EEEEEhhhcCcC-CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 999999876431 3467788999999999999999999999999 5899999999887 333 3346799999999999
Q ss_pred EEEEEecCCcEEEe
Q 003279 820 MVASASHDKCVKIW 833 (834)
Q Consensus 820 ~LaSgs~DG~I~IW 833 (834)
+||++|+.|+|+||
T Consensus 240 ~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIF 253 (346)
T ss_pred EEEEEcCCCeEEEE
Confidence 99999999999997
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5e-12 Score=145.09 Aligned_cols=234 Identities=15% Similarity=0.051 Sum_probs=164.6
Q ss_pred cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCc
Q 003279 575 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 651 (834)
Q Consensus 575 ~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~ 651 (834)
.|.++|.+.+.. ..+..+...+...+|+|||+.|+..+.+ ..|++||+.++.. ..+....+.+...+|+|+|+.
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCE
Confidence 477788775543 4555677789999999999999877654 3699999987653 333334445667899999998
Q ss_pred EEEEEeCCC--cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEEEeCCCCCEEE
Q 003279 652 LLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVHS 726 (834)
Q Consensus 652 llasgs~Dg--~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d---g~I~iwDl~t~~~~~~l~~h~~~I~s 726 (834)
++++.+.++ .|++||+.++................|+|+++.|+..+.. ..|+++|+.+++...... .......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~ 335 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR 335 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence 887776665 6888999988765544444456678999999988877653 368888988776433222 2233446
Q ss_pred EEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeE
Q 003279 727 VCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT 799 (834)
Q Consensus 727 l~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg---~I~Iwdl~~~~~ 799 (834)
..|+|||++|+... ++ .|.+||+.++.. ..+ .. ........|+|+|+.|+..+.++ .|+++++..+..
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~l---t~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RIL---TD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEc---cC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 78999999998876 33 588999987632 222 21 11223568999999998877653 688888877666
Q ss_pred EEeccCCCCeEEEEEeCC
Q 003279 800 LTLSAHDKLVSSLAASTV 817 (834)
Q Consensus 800 ~~l~~h~~~V~~lafspd 817 (834)
..+..+.+.+...+|+|-
T Consensus 411 ~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 411 LPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EECcCCCCCcCCCccCCC
Confidence 566566677888888863
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-11 Score=137.22 Aligned_cols=263 Identities=10% Similarity=0.055 Sum_probs=172.5
Q ss_pred CEE-EEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEE
Q 003279 565 KLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 643 (834)
Q Consensus 565 ~~L-asgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl 643 (834)
+++ ++-..++.|.|.|..+.+.+.++......-..+.|+||++++++++.||.|.++|+.+.+. +..+.. .....++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-v~~i~~-G~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV-VATIKV-GGNPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE-EEEEE--SSEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE-EEEEec-CCCcceE
Confidence 344 4455689999999999999999986655445688999999999999999999999998774 555543 3457889
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC--------CCeeEEEEecCCCEEEEEEcC-CeEEEEECCCCeEE
Q 003279 644 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--------SGATQMRFQPRLGRILAAAIE-NYISILDVETQVCR 714 (834)
Q Consensus 644 ~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~--------~~i~~l~~sp~g~~ll~~s~d-g~I~iwDl~t~~~~ 714 (834)
++++||+++++++..++.+.++|.++.+.+..+... ..+..+..++....+++.-.| +.|.+.|.......
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence 999999999988889999999999999999887642 356778888888877777665 89999998765322
Q ss_pred -EEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeec----CCCceEEEEEeCC----------C
Q 003279 715 -LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC----TGNKFHSCVFHPT----------F 777 (834)
Q Consensus 715 -~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~----~~~~I~svafspd----------g 777 (834)
..............|+|+++|++++. ++.|-++|..++ +.+..+.. |..+...+ .||. +
T Consensus 164 ~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~---k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~ 239 (369)
T PF02239_consen 164 KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG---KLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLG 239 (369)
T ss_dssp EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT---EEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSS
T ss_pred ceeeecccccccccccCcccceeeecccccceeEEEeeccc---eEEEEeeccccccccccccc-cCCCcceEEeecccc
Confidence 22333456788999999999988766 779999999887 33333322 22222221 2222 2
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEE-eccCCCCeEEEEEeCCCCEEEEE----ecCCcEEEeC
Q 003279 778 PSLLVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASA----SHDKCVKIWK 834 (834)
Q Consensus 778 ~~L~sgs~dg~I~Iwdl~~~~~~~-l~~h~~~V~~lafspdg~~LaSg----s~DG~I~IWd 834 (834)
...++.-..+.+.+||....+.+. +...... ..+..+|++++|.+. ...+.|.|+|
T Consensus 240 ~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD 300 (369)
T PF02239_consen 240 YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVID 300 (369)
T ss_dssp SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEE
T ss_pred ceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEE
Confidence 333233333456678888888884 4444444 778889999999988 3447787775
|
... |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-12 Score=138.10 Aligned_cols=237 Identities=16% Similarity=0.171 Sum_probs=183.9
Q ss_pred CCCCeEEEEECCCC--CEEEEEeCCCeEEEEecCCCCcee-----eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEE
Q 003279 593 HTQWITDVRFSPSL--SRLATSSADRTVRVWDTENPDYSL-----RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 665 (834)
Q Consensus 593 h~~~I~~l~fspdg--~~Latgs~Dg~I~IWDl~s~~~~i-----~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lw 665 (834)
....|+.++|.-++ ..|..++.|..+..+.+......- ........+|..+.... ..|++|..+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d---g~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD---GTLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC---CEEEEEecCCcEEEE
Confidence 34557777776543 345555466666666666543211 13344566777777652 256688889999999
Q ss_pred ECCCCc----eeeEeecCCCeeEEEEecCCCEEEE-EEcC--CeEEEEECCCCeEEEEEeCC---------CCCEEEEEE
Q 003279 666 SINNGS----CAGVFKCQSGATQMRFQPRLGRILA-AAIE--NYISILDVETQVCRLKLQGH---------KNQVHSVCW 729 (834)
Q Consensus 666 Dl~s~~----~i~~~~~~~~i~~l~~sp~g~~ll~-~s~d--g~I~iwDl~t~~~~~~l~~h---------~~~I~sl~~ 729 (834)
..+.+. ....+..+.++..+.-++...+|++ |+.. +.+.|||++..+.+..-+.- .-+++++.|
T Consensus 131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 998543 4445556678888888887777666 7777 78999999988766654432 225678899
Q ss_pred cCC--CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--Eecc
Q 003279 730 NTS--GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSA 804 (834)
Q Consensus 730 spd--g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~--~l~~ 804 (834)
-+. ...|++++ -+.|++||.+.+. +++..+.....++.++...|++++|+++...+.+..||++.++.. .+.+
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qR--RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQR--RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccC--cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 887 78888888 8999999999775 677888888999999999999999999999999999999999988 4778
Q ss_pred CCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 805 HDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 805 h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
..+.|++|..+|.+.+|++|+-|..|+|+|
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 899999999999999999999999999997
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-14 Score=152.48 Aligned_cols=229 Identities=15% Similarity=0.178 Sum_probs=189.8
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeE
Q 003279 596 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 675 (834)
Q Consensus 596 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~ 675 (834)
.-..+.|+.+|++|+.|+..|.|..+|..+... .....-...|.++.|..+.. +||++ ....++|||-. |..+..
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L--~~Ei~v~Etv~Dv~~LHneq-~~AVA-QK~y~yvYD~~-GtElHC 205 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL--HFEINVMETVRDVTFLHNEQ-FFAVA-QKKYVYVYDNN-GTELHC 205 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeeccccee--eeeeehhhhhhhhhhhcchH-HHHhh-hhceEEEecCC-CcEEee
Confidence 456889999999999999999999999998664 22223456788999987754 55444 46789999966 777788
Q ss_pred eecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC
Q 003279 676 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 754 (834)
Q Consensus 676 ~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~ 754 (834)
++....+..+.|.|..-.|++++..|.++.-|+.+|+.+..+....+.+..++-+|-+..+-+|. .|+|.+|.-.+.
T Consensus 206 lk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk-- 283 (545)
T KOG1272|consen 206 LKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK-- 283 (545)
T ss_pred hhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc--
Confidence 88889999999999977788888889999999999999999888888999999999999999988 999999998877
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 755 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 755 ~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+++..+-+|.++|.++++.++|.++++++.|..|+|||++.-..+.......+...++||..| +++++....|.||.
T Consensus 284 -ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 284 -EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred -chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCCeeeeeh
Confidence 677788899999999999999999999999999999999987755222225667788888655 44455666788984
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.6e-12 Score=143.47 Aligned_cols=233 Identities=15% Similarity=0.099 Sum_probs=160.2
Q ss_pred cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC-C--eEEEEecCCCCceeeeeccCCCCeEEEEEccCCCc
Q 003279 575 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 651 (834)
Q Consensus 575 ~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D-g--~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~ 651 (834)
.|.++|.+.... ..+..+...+.+..|+|||+.|+..+.+ + .|++||+.++.. ..+....+.....+|+||++.
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCCE
Confidence 577778665443 4555677789999999999998877543 2 688999987653 222222334457899999998
Q ss_pred EEEEEeCCCc--EEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEEEeCCCCCEEE
Q 003279 652 LLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVHS 726 (834)
Q Consensus 652 llasgs~Dg~--I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d---g~I~iwDl~t~~~~~~l~~h~~~I~s 726 (834)
++++.+.++. |++||+.+++...............|+|+++.|++.+.. ..|+++|+.+++.... .........
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~ 354 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLG 354 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcC
Confidence 8888777775 888899887765544444456778999999998877653 3578888887764332 222233446
Q ss_pred EEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeE
Q 003279 727 VCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT 799 (834)
Q Consensus 727 l~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg---~I~Iwdl~~~~~ 799 (834)
.+|+|||++|+..+ ++ .|.++|+.++.. ..+... .......|+|+|+.|+..+.++ .|++++......
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~----~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~ 429 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAM----QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFK 429 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCe----EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 79999999988876 34 566678777632 112211 1223458999999988776644 588888866655
Q ss_pred EEeccCCCCeEEEEEeC
Q 003279 800 LTLSAHDKLVSSLAAST 816 (834)
Q Consensus 800 ~~l~~h~~~V~~lafsp 816 (834)
..+..+.+.+...+|+|
T Consensus 430 ~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 430 ARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EECcCCCCCcCCCccCC
Confidence 56666677788888987
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.2e-12 Score=149.70 Aligned_cols=251 Identities=17% Similarity=0.234 Sum_probs=173.5
Q ss_pred EeCCCCeEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEecCCCCc------eeeeeccCCCCeEEEEEccCCCc
Q 003279 579 WCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKED 651 (834)
Q Consensus 579 Wd~~t~~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~s~~~------~i~~~~~h~~~V~sl~fspdg~~ 651 (834)
|+. .|..+..+..|...|..++.++.. .+|+|||.||+|++||...-.. ...++......+.++.+.+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 553 468888899999999999998764 9999999999999999874221 12344445788999999988775
Q ss_pred EEEEEeCCCcEEEEECCCCc-------eeeEeec--CCCe-eEEEEec-CCC-EEEEEEcCCeEEEEECCCCeEEEEEeC
Q 003279 652 LLCSCDNNSEIRYWSINNGS-------CAGVFKC--QSGA-TQMRFQP-RLG-RILAAAIENYISILDVETQVCRLKLQG 719 (834)
Q Consensus 652 llasgs~Dg~I~lwDl~s~~-------~i~~~~~--~~~i-~~l~~sp-~g~-~ll~~s~dg~I~iwDl~t~~~~~~l~~ 719 (834)
+|.++.||.|.+.+++-.. +.+.... .+.+ ..-+|.. ... .++++...+.|..||++.......++.
T Consensus 1113 -~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 -FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred -EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 5566899999999987521 1111111 2222 2233332 223 577777789999999998765554442
Q ss_pred --CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe-ecCCCceEEEEEeCCCC---EEEEEE--cCCeEE
Q 003279 720 --HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFP---SLLVIG--CYETLE 790 (834)
Q Consensus 720 --h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~-~~~~~~I~svafspdg~---~L~sgs--~dg~I~ 790 (834)
..+.|++++.+|.+.+++.|+ .|.+.+||++-+ ..+... ..+..++..+..+|..+ ..++++ ..+.|.
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~---~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR---VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCceEEEEEeecC---ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 457899999999999999999 899999999987 444433 23446777777776544 444444 456899
Q ss_pred EEECCCCeEEE-eccC-------------------CCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 791 LWNMTENKTLT-LSAH-------------------DKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 791 Iwdl~~~~~~~-l~~h-------------------~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+|++.+|.... +... .-.....++..-+.++.+|+.|..|+.||
T Consensus 1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 99998875431 1111 11122233444456899999999999998
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-12 Score=139.96 Aligned_cols=170 Identities=18% Similarity=0.263 Sum_probs=130.8
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEEEe----ccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCCC--------
Q 003279 561 SPDGKLLATGGHDKKAVLWCTESFTVKSTL----EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD-------- 627 (834)
Q Consensus 561 Spdg~~Lasgs~Dg~I~IWd~~t~~~~~~l----~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~s~~-------- 627 (834)
.+++--|+.|-..|.|.+.|....+..+.+ .-....|+|+.|-|. ...++++-.+|.+++||.....
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 345556778888899999886552222111 123468999999995 4566677789999999764110
Q ss_pred -------------------ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEE
Q 003279 628 -------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRF 687 (834)
Q Consensus 628 -------------------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~ 687 (834)
.++..+.-..+.|..++|+|||. +||+.+.||.++|||..+.+.+..++. -++..|++|
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcW 340 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCW 340 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEE
Confidence 01111222345788999999877 667889999999999998877665553 578999999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcC
Q 003279 688 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 731 (834)
Q Consensus 688 sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~sp 731 (834)
+|||++|++|++|.-|.||.+...+.+..-.+|+.+|..|+|+|
T Consensus 341 SPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 341 SPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 99999999999999999999999999999999999999999997
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7e-12 Score=131.28 Aligned_cols=229 Identities=16% Similarity=0.187 Sum_probs=162.4
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC----
Q 003279 595 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---- 670 (834)
Q Consensus 595 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~---- 670 (834)
-.+..++|++.-..++++..|-.|++||-.. ..+..........|+|++|-|.+...|+.|. .+.|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccccc
Confidence 3577899999777789999999999999886 3222222334578999999998887787777 456999976421
Q ss_pred c--------eeeEee--cCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 003279 671 S--------CAGVFK--CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 671 ~--------~i~~~~--~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasg 739 (834)
. +...+. .+..|+++.|.+||..+++++. +..|.|||..++..+.......+.++-+.|||||.+|+++
T Consensus 177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA 256 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA 256 (445)
T ss_pred cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence 1 111222 3567999999999999998887 5789999999987665554456778899999999999999
Q ss_pred e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCe----------EE-------
Q 003279 740 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENK----------TL------- 800 (834)
Q Consensus 740 s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg-~I~Iwdl~~~~----------~~------- 800 (834)
. |+..++|..... ..........+.|...+|+|+|++|+.+.... .|+-....... .+
T Consensus 257 t~davfrlw~e~q~---wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 257 TCDAVFRLWQENQS---WTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred cccceeeeehhccc---ceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 8 999999965443 12222333455899999999999877665543 33322221110 11
Q ss_pred --Eecc----CCCCeEEEEEeCCCCEEEEEecCC
Q 003279 801 --TLSA----HDKLVSSLAASTVNGMVASASHDK 828 (834)
Q Consensus 801 --~l~~----h~~~V~~lafspdg~~LaSgs~DG 828 (834)
+... ..+++.+++|.|.|.+||+.-..+
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 0111 146788999999999999875443
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.3e-13 Score=137.86 Aligned_cols=221 Identities=17% Similarity=0.217 Sum_probs=160.7
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec
Q 003279 599 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 678 (834)
Q Consensus 599 ~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~ 678 (834)
-++|+|+|+++|+++.- .+.|-|.++-.. ..+...-..|.-|.|..+..++++....|+.|.+|++...+-...+..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~--~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL--HQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhH--HHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 46899999999999766 777888776442 222223467888999999999999999999999999998887777764
Q ss_pred -CCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC
Q 003279 679 -QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK 754 (834)
Q Consensus 679 -~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~ 754 (834)
..++..++|+|+|+.|+..++ +-.|.+|.+.+.+.... .-.+..+..++|+|||++.+.++ |. .-.+.+...+.
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDC-kdyv~i~~c~~ 167 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDC-KDYVQISSCKA 167 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccH-HHHHHHHhhHH
Confidence 567999999999988776665 78999999998766543 22345678999999999999988 43 22222222222
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 755 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 755 ~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
...+..+....-..+.+.|+|||..|++ ||.--.-.+....-.-.+..++|+|.+++|+.|+.|+.++|-
T Consensus 168 W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 168 WILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred HHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhh
Confidence 2445555555667788999999996654 442111111122223468889999999999999999998874
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.8e-12 Score=131.25 Aligned_cols=252 Identities=17% Similarity=0.273 Sum_probs=192.7
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEEEe-ccCCCCeEEEEECCCCCEEEEEeCCCe
Q 003279 540 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC-TESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRT 617 (834)
Q Consensus 540 ~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd-~~t~~~~~~l-~~h~~~I~~l~fspdg~~Latgs~Dg~ 617 (834)
+....+..++||.+.|+....-|...-+++.+.|.+++||- .+.++.-..+ .....+++++.+.++...|++|-..|+
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 33445678899999999999999888899999999999994 3444444333 234567899999999999999999999
Q ss_pred EEEEecCCC---CceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEE
Q 003279 618 VRVWDTENP---DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 694 (834)
Q Consensus 618 I~IWDl~s~---~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~l 694 (834)
+.-+.+... -...+.+..|...|..+.|+-..+ .+++++.|..+.---.+.+..+..+......+++.+.-. +.
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~ 168 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YA 168 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EE
Confidence 998877532 123567778999999999987645 566888887766444555555544443333333333322 55
Q ss_pred EEEEcCCeEEEEECC--CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003279 695 LAAAIENYISILDVE--TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 771 (834)
Q Consensus 695 l~~s~dg~I~iwDl~--t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 771 (834)
++|...|.|.+..+. .-..+.++.+|.+.+++++|.+....|++|. |..|.+||+.-.. ....++.+|...|..+
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~--g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK--GTAYELQGHNDKVQAL 246 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc--ceeeeeccchhhhhhh
Confidence 666667777665544 4577889999999999999999999999998 8999999997653 4666778888999999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 772 VFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 772 afspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
...+.-..+++++.||.|.+||++.
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEeccc
Confidence 8888888999999999999999853
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-12 Score=130.80 Aligned_cols=264 Identities=16% Similarity=0.214 Sum_probs=180.8
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~-gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
..+.+|..-+.|.+|....... ...++ .|...|+.+...|+ ..|.+-+.|..+.+|++.
T Consensus 26 ~rL~sg~~~G~V~~w~lqt~r~-------------------~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia 85 (323)
T KOG0322|consen 26 ERLMSGLSVGIVKMWVLQTERD-------------------LPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIA 85 (323)
T ss_pred hhhhcccccceEEEEEeecCcc-------------------chhhhhhccceeeceeecCC-cchhhcCCCceEEEEEcc
Confidence 3477888889999996544321 23344 56778999998887 467888899999999998
Q ss_pred CCeEEEEeccCCCCeEEEEECCC-----CC----EEEEEeCCC-eEEEEecCCCCceeee----eccCCCCeEEEEEccC
Q 003279 583 SFTVKSTLEEHTQWITDVRFSPS-----LS----RLATSSADR-TVRVWDTENPDYSLRT----FTGHSTTVMSLDFHPS 648 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l~fspd-----g~----~Latgs~Dg-~I~IWDl~s~~~~i~~----~~~h~~~V~sl~fspd 648 (834)
....+.. |.-.++++.|.+. ++ .++.-++.. .+.+-|..... .+.. -.+..+.++|..+..+
T Consensus 86 ~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t-qv~i~dd~~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 86 YSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT-QVQIADDSERSKLGSVMCQDKDHA 161 (323)
T ss_pred CcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccc-eeEccCchhccccCceeeeecccc
Confidence 7555432 3344555555432 11 122111111 01222221111 0111 1223467888775432
Q ss_pred --CCcEEEEEeCCCcEEEEECCCCceeeEe-----------ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC--e-
Q 003279 649 --KEDLLCSCDNNSEIRYWSINNGSCAGVF-----------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQ--V- 712 (834)
Q Consensus 649 --g~~llasgs~Dg~I~lwDl~s~~~i~~~-----------~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~--~- 712 (834)
...++++|.++|.+.+||+.++..+..+ .+..++.++.|.+.-..=+.++.+..+..|.+... .
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl 241 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL 241 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc
Confidence 3446677888999999999987433322 24567889999876666677888888889887643 2
Q ss_pred -EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003279 713 -CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 790 (834)
Q Consensus 713 -~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~ 790 (834)
...++.-..-.|..+.+-||++++++++ |+.|+||..++. .++..+.-|...|.+++|+|+...+++++.|..|.
T Consensus 242 q~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl---~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rIS 318 (323)
T KOG0322|consen 242 QIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL---NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARIS 318 (323)
T ss_pred cccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC---CchhhhhhhhcceeEEEeCCCCchhhhccCCceEE
Confidence 1222222344688899999999999999 999999999998 77888888999999999999999999999999999
Q ss_pred EEEC
Q 003279 791 LWNM 794 (834)
Q Consensus 791 Iwdl 794 (834)
+|++
T Consensus 319 LWkL 322 (323)
T KOG0322|consen 319 LWKL 322 (323)
T ss_pred eeec
Confidence 9986
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=9e-11 Score=134.16 Aligned_cols=238 Identities=14% Similarity=0.114 Sum_probs=159.4
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCE--E-EEEeCCC--eEEEEecCCCCceeeeeccCCCCeEEEEEccC
Q 003279 574 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR--L-ATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 648 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~--L-atgs~Dg--~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspd 648 (834)
+.|.+.|.+.+... .+......+.+-+|+|||+. + ++...++ .|++.++.++.. ..+....+.....+|+||
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCCCCccceEECCC
Confidence 36777787655443 45455666788999999875 2 2444443 578888876543 333334455667899999
Q ss_pred CCcEEEEEeCCC----cEEEEECCCC---ceeeEeecC-CCeeEEEEecCCCEEEEEEc-CCe--EEEEECCC-CeEEEE
Q 003279 649 KEDLLCSCDNNS----EIRYWSINNG---SCAGVFKCQ-SGATQMRFQPRLGRILAAAI-ENY--ISILDVET-QVCRLK 716 (834)
Q Consensus 649 g~~llasgs~Dg----~I~lwDl~s~---~~i~~~~~~-~~i~~l~~sp~g~~ll~~s~-dg~--I~iwDl~t-~~~~~~ 716 (834)
|+.++++.+.+| .+.+|++..+ ......... ......+|+|||+.|+..+. +|. |+++++.. +.....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 998888775444 3444777653 333333222 23467899999998887764 554 55556542 233444
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEe--C--CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeE
Q 003279 717 LQGHKNQVHSVCWNTSGEYLASVS--D--ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETL 789 (834)
Q Consensus 717 l~~h~~~I~sl~~spdg~~Lasgs--D--g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d---g~I 789 (834)
+..+...+....|+|||+.|+... + ..|.+||+.++.. ..+......+....|+|||+.|+..+.+ ..|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----YQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL 397 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----EEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 554556678899999999988776 2 3799999988732 2222223456778999999988876543 379
Q ss_pred EEEECCCCeEEEeccCCCCeEEEEEeCCC
Q 003279 790 ELWNMTENKTLTLSAHDKLVSSLAASTVN 818 (834)
Q Consensus 790 ~Iwdl~~~~~~~l~~h~~~V~~lafspdg 818 (834)
+++|+.+++...+....+.+...+|+|-.
T Consensus 398 ~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 398 YLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEECCCCCEEEeecCCCcccCceecCCC
Confidence 99999998887776666778888998753
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-12 Score=140.60 Aligned_cols=283 Identities=15% Similarity=0.182 Sum_probs=212.7
Q ss_pred CCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC--CCCEEEEEeC
Q 003279 495 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGH 572 (834)
Q Consensus 495 ~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSp--dg~~Lasgs~ 572 (834)
....+......+++||.|..|-+|.+..... ......||...|.-..|-| +...|++++.
T Consensus 146 ntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~------------------~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~ 207 (559)
T KOG1334|consen 146 NTVHFNQRGDVLASGSDDLQVVVWDWVSGSP------------------KLSFESGHCNNVFQAKFIPFSGDRTIVTSSR 207 (559)
T ss_pred ceeeecccCceeeccCccceEEeehhhccCc------------------ccccccccccchhhhhccCCCCCcCceeccc
Confidence 3444455667899999999999996644311 1234458988898888988 4457999999
Q ss_pred CCcEEEEeCC-CCeE--EEEeccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEecCCCCce--eeeeccCCC---CeEEE
Q 003279 573 DKKAVLWCTE-SFTV--KSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYS--LRTFTGHST---TVMSL 643 (834)
Q Consensus 573 Dg~I~IWd~~-t~~~--~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~s~~~~--i~~~~~h~~---~V~sl 643 (834)
||.|++=.+. ++.+ ...+..|.++|..++.-|+. ..|.+++.|+.|.-+|+...... +.....+.. ...+|
T Consensus 208 dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~I 287 (559)
T KOG1334|consen 208 DGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTI 287 (559)
T ss_pred cCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeE
Confidence 9999988654 3333 34567899999999999964 46899999999999999864421 122222333 56789
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCce------eeEee-------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003279 644 DFHPSKEDLLCSCDNNSEIRYWSINNGSC------AGVFK-------CQSGATQMRFQPRLGRILAAAIENYISILDVET 710 (834)
Q Consensus 644 ~fspdg~~llasgs~Dg~I~lwDl~s~~~------i~~~~-------~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t 710 (834)
+..|...+.+++++.|-.+++||.+.-.. +..+. ....|++++|+.++..++++..|-.|++|.-.-
T Consensus 288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM 367 (559)
T ss_pred ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc
Confidence 99999898999999999999999875321 12221 234699999999999999999999999995432
Q ss_pred --C----------eEEE-EEeCCCC--CEEEEEE-cCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003279 711 --Q----------VCRL-KLQGHKN--QVHSVCW-NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 773 (834)
Q Consensus 711 --~----------~~~~-~l~~h~~--~I~sl~~-spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svaf 773 (834)
+ ..+. .+++|.+ .|.++-| -|...|+++|+ -|.|.||+-.++ +.+..+.+....|+|+.-
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~---eii~~MegDr~VVNCLEp 444 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG---EIIRFMEGDRHVVNCLEP 444 (559)
T ss_pred ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh---HHHHHhhcccceEeccCC
Confidence 2 1222 3677765 4667755 57889999999 569999999887 666667777778999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCe
Q 003279 774 HPTFPSLLVIGCYETLELWNMTENK 798 (834)
Q Consensus 774 spdg~~L~sgs~dg~I~Iwdl~~~~ 798 (834)
+|.-+.|++++-|..|+||-..+.+
T Consensus 445 HP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 445 HPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred CCCCchhhccCCccceeeecCCccc
Confidence 9999999999999999999874433
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-10 Score=127.34 Aligned_cols=272 Identities=16% Similarity=0.223 Sum_probs=195.3
Q ss_pred CeEEEEEcCCCCEEEEEeCC---------------CcEEEEeCCCCeEEEEeccCCCC--eE-EEEECCCCCEEEEEeCC
Q 003279 554 KVESCHFSPDGKLLATGGHD---------------KKAVLWCTESFTVKSTLEEHTQW--IT-DVRFSPSLSRLATSSAD 615 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~D---------------g~I~IWd~~t~~~~~~l~~h~~~--I~-~l~fspdg~~Latgs~D 615 (834)
.|..+.|+|.++||.+-+.. ..+.|||+.++..+..+..-..+ .. -+.|+.+.+++|-. ..
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~ 151 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VG 151 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-cc
Confidence 49999999999999996553 35999999999999998876666 55 78899888877655 34
Q ss_pred CeEEEEecCCCCceeeeeccC-CCCeEEEEEccCCCc-EEEE-----EeCCCcEEEEECCCCceeeEeec-CCCeeEEEE
Q 003279 616 RTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKED-LLCS-----CDNNSEIRYWSINNGSCAGVFKC-QSGATQMRF 687 (834)
Q Consensus 616 g~I~IWDl~s~~~~i~~~~~h-~~~V~sl~fspdg~~-llas-----gs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~ 687 (834)
..++|+++ ++......+..- ...|....|+|.+++ .||. .+.++.+++|.+..++.+..... ...-..+.|
T Consensus 152 ~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW 230 (561)
T COG5354 152 SSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKW 230 (561)
T ss_pred CeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEE
Confidence 46999997 333222222111 356888889987432 2222 34578999999987776655443 344567889
Q ss_pred ecCCCEEEEEEc-----------CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCC
Q 003279 688 QPRLGRILAAAI-----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGS 753 (834)
Q Consensus 688 sp~g~~ll~~s~-----------dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~ 753 (834)
.+.|+++++-.. +..++++++....+.... ...++|..++|.|.++.+++.+ +-.+.++|++..
T Consensus 231 ~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N- 308 (561)
T COG5354 231 QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN- 308 (561)
T ss_pred ecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc-
Confidence 998888766432 346888998855444443 5688999999999988776655 779999999875
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEe-----
Q 003279 754 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS----- 825 (834)
Q Consensus 754 ~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg---~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs----- 825 (834)
... ......-+.+.|+|.++++++++.++ .|.+||..+...+.-.-......-+.|+||+.++.+..
T Consensus 309 ---l~~--~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~ 383 (561)
T COG5354 309 ---LRF--YFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKL 383 (561)
T ss_pred ---eEE--ecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCccc
Confidence 222 22344556789999999999988875 89999988876663222333455578999999888764
Q ss_pred -cCCcEEEeC
Q 003279 826 -HDKCVKIWK 834 (834)
Q Consensus 826 -~DG~I~IWd 834 (834)
.|..|+|||
T Consensus 384 ~~Dn~i~l~~ 393 (561)
T COG5354 384 RVDNSIKLWD 393 (561)
T ss_pred ccCcceEEEE
Confidence 478899996
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.8e-11 Score=136.28 Aligned_cols=222 Identities=17% Similarity=0.169 Sum_probs=152.4
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEE-EeCCC--eEE
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADR--TVR 619 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs~D---g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Lat-gs~Dg--~I~ 619 (834)
+.+..|...+....|+|||+.|+..+.+ ..|++||+.+++... +....+.+...+|+|||+.|+. .+.++ .|+
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 3445667789999999999999887644 368999998876543 3334455667999999998874 44455 688
Q ss_pred EEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC--cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEE
Q 003279 620 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 620 IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg--~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~ 697 (834)
+||+.++. ...+..+........|+|+++.++++...++ .|+++|+.+++...............|+|+++.++..
T Consensus 271 ~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 271 VMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMV 348 (430)
T ss_pred EEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEE
Confidence 88998755 3445556666777899999998887765554 5778888877754433222334567899999999888
Q ss_pred EcCC---eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEE
Q 003279 698 AIEN---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHS 770 (834)
Q Consensus 698 s~dg---~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~s 770 (834)
..++ .|.+||+.++.... +. +........|+|||+.|+..+ ++ .|+++++... ....+....+.+..
T Consensus 349 ~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~----~~~~l~~~~g~~~~ 422 (430)
T PRK00178 349 HRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR----VRLPLPTAQGEVRE 422 (430)
T ss_pred EccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEECcCCCCCcCC
Confidence 7543 58899998876433 22 122233568999999988776 33 5777777543 22233344455666
Q ss_pred EEEeCC
Q 003279 771 CVFHPT 776 (834)
Q Consensus 771 vafspd 776 (834)
.+|+|-
T Consensus 423 p~ws~~ 428 (430)
T PRK00178 423 PSWSPY 428 (430)
T ss_pred CccCCC
Confidence 777763
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2e-11 Score=134.28 Aligned_cols=237 Identities=15% Similarity=0.182 Sum_probs=171.9
Q ss_pred cCCCCeEEEEECCCCCEE-EEEeCCCeEEEEecCCCCceeeeeccCCCCeEEE-EEccCCCcEEEEEeCCCcEEEEECCC
Q 003279 592 EHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL-DFHPSKEDLLCSCDNNSEIRYWSINN 669 (834)
Q Consensus 592 ~h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl-~fspdg~~llasgs~Dg~I~lwDl~s 669 (834)
+|....+.|..+|||.|+ +||.+.-.|+|||+..-. +..-......|..+ .++.|-...+ .--.|.+|.+...-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--LKFERhlDae~V~feiLsDD~SK~v-~L~~DR~IefHak~- 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--LKFERHLDAEVVDFEILSDDYSKSV-FLQNDRTIEFHAKY- 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccce--eeeeecccccceeEEEeccchhhhe-EeecCceeeehhhc-
Confidence 577888999999999985 566678899999998643 33222223334333 3343333333 23346666654322
Q ss_pred CceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEE
Q 003279 670 GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 748 (834)
Q Consensus 670 ~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwD 748 (834)
-....+..+.....++++.-..-|++++....|+-++++.|..+..+....+.+++|..++...+|++|+ +|.|.+||
T Consensus 125 -G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 125 -GRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred -CeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 2223333445566777777667788999999999999999999988888889999999999999999999 99999999
Q ss_pred cCCCCCceeEEE---eecCC-----CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCC--CeEEEEEeCC-
Q 003279 749 IGSGSKGECIHE---LSCTG-----NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDK--LVSSLAASTV- 817 (834)
Q Consensus 749 l~s~~~~~~i~~---~~~~~-----~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~--~V~~lafspd- 817 (834)
.+.......+.. +..+. ..|+++.|+.+|-.+++|+.+|.|+|||++..+++....|.. +|..+.|.+.
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~ 283 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD 283 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccC
Confidence 988643222221 11222 348999999999999999999999999999999997777754 6888888765
Q ss_pred -CCEEEEEecCCcEEEeC
Q 003279 818 -NGMVASASHDKCVKIWK 834 (834)
Q Consensus 818 -g~~LaSgs~DG~I~IWd 834 (834)
...|++. +...++|||
T Consensus 284 ~q~~v~S~-Dk~~~kiWd 300 (703)
T KOG2321|consen 284 QQNKVVSM-DKRILKIWD 300 (703)
T ss_pred CCceEEec-chHHhhhcc
Confidence 3455554 456789997
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.5e-10 Score=121.05 Aligned_cols=256 Identities=11% Similarity=0.061 Sum_probs=170.6
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC----------CCeEEEEecCCCCceeeeeccC-------
Q 003279 574 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGH------- 636 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~----------Dg~I~IWDl~s~~~~i~~~~~h------- 636 (834)
+.|.+.|..+++.+..+..-..+- .+ ++||++.|+++.. +..|.+||+.+.+. +..+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-IADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-EeEEccCCCchhhc
Confidence 899999999999998887544443 34 9999998887765 78999999998765 3333321
Q ss_pred CCCeEEEEEccCCCcEEEEEeC-CCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC-CeE-
Q 003279 637 STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET-QVC- 713 (834)
Q Consensus 637 ~~~V~sl~fspdg~~llasgs~-Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t-~~~- 713 (834)
......++++|||+.++++--. +..|.++|+.+++.+..+.......-...+.+ . +.+.+.||......+.+ ++.
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~-~-~~~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAND-T-FFMHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCC-c-cEEEeecCceEEEEecCCCceE
Confidence 2234478999999977766534 89999999999999998887553333333222 2 22334555544433332 221
Q ss_pred EEE---EeCCCCCEE-EEEEcC-CCCEEEEEeCCeEEEEEcCCCCCc--eeEEEeec-------CCCceEEEEEeCCCCE
Q 003279 714 RLK---LQGHKNQVH-SVCWNT-SGEYLASVSDELVRVWSIGSGSKG--ECIHELSC-------TGNKFHSCVFHPTFPS 779 (834)
Q Consensus 714 ~~~---l~~h~~~I~-sl~~sp-dg~~LasgsDg~I~IwDl~s~~~~--~~i~~~~~-------~~~~I~svafspdg~~ 779 (834)
... +.....++. .-.|.+ +|+++++..+|.|++.|+...... ..+..+.. ....+.-++++++++.
T Consensus 182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ 261 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR 261 (352)
T ss_pred EeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE
Confidence 111 111001110 113455 899998888999999997554211 12222111 1233445999999999
Q ss_pred EEEEE----------cCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCC-EEEEEe-cCCcEEEeC
Q 003279 780 LLVIG----------CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 834 (834)
Q Consensus 780 L~sgs----------~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~-~LaSgs-~DG~I~IWd 834 (834)
+++.. ..+.|.++|..+++.+....-...+..++++||++ +|++.+ .++.|.|.|
T Consensus 262 lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 262 IYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred EEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 98853 22489999999999996666677999999999999 877666 578788875
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-09 Score=113.83 Aligned_cols=266 Identities=12% Similarity=0.098 Sum_probs=186.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEeCCC--CeEE--EEeccCCCCeEEEEECCCCCEEEEEeC-CCeEEEE
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTES--FTVK--STLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVW 621 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~D---g~I~IWd~~t--~~~~--~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IW 621 (834)
.+.+.++-++|+|++++|.++..+ |.|..|.++. |+.. ........+-+.+++++++++|+++.. .|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 455668899999999999988654 7787777664 4443 222222334488999999999999876 5789999
Q ss_pred ecCCCCcee--eeeccCCCC----------eEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeE----eecCCCeeEE
Q 003279 622 DTENPDYSL--RTFTGHSTT----------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKCQSGATQM 685 (834)
Q Consensus 622 Dl~s~~~~i--~~~~~h~~~----------V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~----~~~~~~i~~l 685 (834)
-+....... .....|.+. +.+..+.|++++++++.-.--.|.+|++..++.... ++...+...+
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 997643211 223335544 888999999886665443345799999998765432 3446778999
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECCCC-eEEEEEeC---------CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC
Q 003279 686 RFQPRLGRILAAAI-ENYISILDVETQ-VCRLKLQG---------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG 752 (834)
Q Consensus 686 ~~sp~g~~ll~~s~-dg~I~iwDl~t~-~~~~~l~~---------h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~ 752 (834)
.|+|++++.++.++ +++|.+|..+.. ..+..+.. ...+...|.+++||++|.++. .+.|.+|.+...
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 99999999888877 789999998873 22222221 234677899999999999988 558999988765
Q ss_pred CC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEC--CCCeEEEe--ccCCCCeEEEEEe
Q 003279 753 SK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM--TENKTLTL--SAHDKLVSSLAAS 815 (834)
Q Consensus 753 ~~-~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg-~I~Iwdl--~~~~~~~l--~~h~~~V~~lafs 815 (834)
.. ...+.....+......+.|++.+++|+++..++ .|.+|.+ .+|++..+ ........||.|.
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 32 344444555566678999999999999998876 6777755 45655422 2344556677664
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.5e-11 Score=134.15 Aligned_cols=205 Identities=15% Similarity=0.185 Sum_probs=148.4
Q ss_pred CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC--CcEEEEECCCCceeeEeecCCCeeEEEEecCCCE
Q 003279 616 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 693 (834)
Q Consensus 616 g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D--g~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ 693 (834)
..|.++|..... .+.+..+...+.+.+|+|+++.++++...+ ..|++||+.+++..........+.+++|+|+++.
T Consensus 170 ~~l~~~d~~g~~--~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGAN--PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCC--CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 368888876433 455556777899999999999877665443 4799999998876655555566778999999998
Q ss_pred EEEEEc-C--CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCC
Q 003279 694 ILAAAI-E--NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGN 766 (834)
Q Consensus 694 ll~~s~-d--g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~ 766 (834)
|++... + ..|++||+.++... .+..+........|+|||+.|+.++ ++ .|++||+.++. ...+..+..
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~~~~ 322 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTFRGG 322 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCC
Confidence 876543 3 36999999887543 3334555556789999999888766 23 68888887652 223333455
Q ss_pred ceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCC
Q 003279 767 KFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 828 (834)
Q Consensus 767 ~I~svafspdg~~L~sgs~dg---~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG 828 (834)
.+..+.|+|++++|+.++.++ .|++||+.++....+... .......|+||+++|+.++.++
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 677889999999999988876 899999988766544432 2345678999999888777654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.5e-11 Score=136.27 Aligned_cols=221 Identities=18% Similarity=0.189 Sum_probs=148.9
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEE-EeCCCe--EEE
Q 003279 547 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRT--VRV 620 (834)
Q Consensus 547 ~l~gH~~~V~sl~fSpdg~~Lasgs~D---g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Lat-gs~Dg~--I~I 620 (834)
.+..+...+.+..|+|||+.|+..+.+ ..|++||+.+++... +....+.....+|+|||+.|+. .+.++. |++
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 344556778999999999999877543 258889998876543 3223344557899999998765 455664 777
Q ss_pred EecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC--cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEE
Q 003279 621 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 698 (834)
Q Consensus 621 WDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg--~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s 698 (834)
||+.++. ...+..+...+...+|+||++.+++++..++ .|+++|+.+++..............+|+|++++|+..+
T Consensus 291 ~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 291 VDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred EECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEE
Confidence 7887654 4455556566778999999998887776555 47777888776544332223344578999999998876
Q ss_pred cC-C--eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003279 699 IE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSC 771 (834)
Q Consensus 699 ~d-g--~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 771 (834)
.+ + .|.++|+.++.... +... .......|+|||+.|+... ++ .+++++... .....+....+.+...
T Consensus 369 ~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G----~~~~~l~~~~g~~~~p 442 (448)
T PRK04792 369 RTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG----RFKARLPAGQGEVKSP 442 (448)
T ss_pred ecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC----CceEECcCCCCCcCCC
Confidence 64 3 56778988876533 2222 1223558999999887766 33 477777643 3344444445566777
Q ss_pred EEeCC
Q 003279 772 VFHPT 776 (834)
Q Consensus 772 afspd 776 (834)
+|+|-
T Consensus 443 ~Wsp~ 447 (448)
T PRK04792 443 AWSPF 447 (448)
T ss_pred ccCCC
Confidence 78763
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=3e-11 Score=122.99 Aligned_cols=146 Identities=17% Similarity=0.342 Sum_probs=107.8
Q ss_pred eeEEEEecCCCEEEEEEc----------CCeEEEEECCC-CeEEEEEeC-CCCCEEEEEEcCCCCEEEEEe---CCeEEE
Q 003279 682 ATQMRFQPRLGRILAAAI----------ENYISILDVET-QVCRLKLQG-HKNQVHSVCWNTSGEYLASVS---DELVRV 746 (834)
Q Consensus 682 i~~l~~sp~g~~ll~~s~----------dg~I~iwDl~t-~~~~~~l~~-h~~~I~sl~~spdg~~Lasgs---Dg~I~I 746 (834)
-..+.|++.|.+|++-.. -+...+|.++. ...+..+.- ..++|.+++|+|+|..+++.. +..|.+
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 356788888888776554 12344554432 223333322 345799999999999876653 669999
Q ss_pred EEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEE
Q 003279 747 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 823 (834)
Q Consensus 747 wDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d---g~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaS 823 (834)
||++. ..+..+. ...+..+.|+|+|++|++++.+ |.|.+||+.+.+.+....|.. ++.++|+|||++|++
T Consensus 88 yd~~~----~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVKG----KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCcc----cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEE
Confidence 99962 4555553 5677899999999999998754 579999999988886666654 789999999999999
Q ss_pred Eec------CCcEEEeC
Q 003279 824 ASH------DKCVKIWK 834 (834)
Q Consensus 824 gs~------DG~I~IWd 834 (834)
+.. |..++||+
T Consensus 161 a~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWS 177 (194)
T ss_pred EEeccceeccccEEEEE
Confidence 874 78889985
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-12 Score=141.24 Aligned_cols=166 Identities=17% Similarity=0.271 Sum_probs=128.6
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccC-CCcEEEEEeCCCcEEE
Q 003279 586 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRY 664 (834)
Q Consensus 586 ~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~l 664 (834)
....+.+|.+.|+|+.|+.+|.+|++||.|-.+.|||.-..+.....-.+|...|.++.|-|. ++.++++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 345788999999999999999999999999999999998766656677899999999999984 4668889999999999
Q ss_pred EECCCCc----------eeeEee-cCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeE-EE---------EEeCCCC
Q 003279 665 WSINNGS----------CAGVFK-CQSGATQMRFQPRL-GRILAAAIENYISILDVETQVC-RL---------KLQGHKN 722 (834)
Q Consensus 665 wDl~s~~----------~i~~~~-~~~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~~~-~~---------~l~~h~~ 722 (834)
||+...+ ....+. +...|..++..|++ ..+.++++||+|+-||++.... .. .+...--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9998522 122222 23557778888888 6788999999999999987321 10 1111122
Q ss_pred CEEEEEEcCCC-CEEEEEe-CCeEEEEEcCC
Q 003279 723 QVHSVCWNTSG-EYLASVS-DELVRVWSIGS 751 (834)
Q Consensus 723 ~I~sl~~spdg-~~Lasgs-Dg~I~IwDl~s 751 (834)
...|+.++|.. .+|++|+ |-..++||.+.
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence 46789999864 5677777 77999999653
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-10 Score=132.96 Aligned_cols=215 Identities=13% Similarity=0.101 Sum_probs=143.0
Q ss_pred CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCc--EEEEEeCCC--cEEEEECCCCceeeEeecCCCeeEEEEecCC
Q 003279 616 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED--LLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRL 691 (834)
Q Consensus 616 g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~--llasgs~Dg--~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g 691 (834)
+.|.+.|.+... .+.+......+.+-+|+|||+. ++++...+| .|++.++.+++...............|+|||
T Consensus 165 ~~l~~~d~dG~~--~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQN--LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCC--ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCC
Confidence 357777776543 3445555666788899999976 333554443 6888899888766655555666778999999
Q ss_pred CEEEEEEc-CC----eEEEEECCCC---eEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCe--EEEEEcCCCCCceeEE
Q 003279 692 GRILAAAI-EN----YISILDVETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DEL--VRVWSIGSGSKGECIH 759 (834)
Q Consensus 692 ~~ll~~s~-dg----~I~iwDl~t~---~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~--I~IwDl~s~~~~~~i~ 759 (834)
+.|+.... +| .+.+|++..+ ........+.......+|+|||+.|+..+ ++. |+++++.... ....
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~ 320 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPR 320 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceE
Confidence 99988764 22 3444777653 33333322334456789999999888766 554 5555554221 1223
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEec-C--CcEEEe
Q 003279 760 ELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-D--KCVKIW 833 (834)
Q Consensus 760 ~~~~~~~~I~svafspdg~~L~sgs~d---g~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~-D--G~I~IW 833 (834)
.+......+....|+|||+.|+..+.+ ..|++||+.+++...+......+....|+|||++|+..+. + ..|++|
T Consensus 321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 333344566788999999999887654 3799999999988766655556788999999998775433 2 345555
Q ss_pred C
Q 003279 834 K 834 (834)
Q Consensus 834 d 834 (834)
|
T Consensus 401 d 401 (428)
T PRK01029 401 S 401 (428)
T ss_pred E
Confidence 3
|
|
| >KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-13 Score=136.01 Aligned_cols=77 Identities=32% Similarity=0.750 Sum_probs=64.0
Q ss_pred CcchHHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCCCCcccCCCCCcchhhHHHHHHHHHhhccc----ccchhhhhhh
Q 003279 4 NNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNE----KHSESAASYI 79 (834)
Q Consensus 4 ~~~~~~~~L~~yiy~yl~k~~~~~~A~~~~~e~~~~~~~~~~~~~~~fL~eww~~Fwd~f~a~~~~----~~s~~~~~y~ 79 (834)
++-.|+++|..||||||++-+..++|+.|+.|..+..+ +.+-.+.+||.+|||||||+|+|...+ .||..+..+.
T Consensus 12 Sd~qArekLa~YvYEYLlhvgaqksaqtflseirwekn-itlge~p~FLhsWWcvFwDLYcAAPeRRd~c~HSsEAKaFh 90 (354)
T KOG4594|consen 12 SDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKN-ITLGEPPGFLHSWWCVFWDLYCAAPERRDTCEHSSEAKAFH 90 (354)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hhccCCcchhhhhHHHHHHHhhcCccccCcccccHhhhhhh
Confidence 56789999999999999999999999999999987776 455667799999999999999996554 4555555554
Q ss_pred HH
Q 003279 80 ES 81 (834)
Q Consensus 80 ~~ 81 (834)
++
T Consensus 91 dy 92 (354)
T KOG4594|consen 91 DY 92 (354)
T ss_pred hh
Confidence 43
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.4e-09 Score=113.51 Aligned_cols=261 Identities=11% Similarity=0.127 Sum_probs=182.6
Q ss_pred CCcEEEEeCCCC--eEE-EEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEecCCCCceeeee---ccCCCCeEEE
Q 003279 573 DKKAVLWCTESF--TVK-STLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTF---TGHSTTVMSL 643 (834)
Q Consensus 573 Dg~I~IWd~~t~--~~~-~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~s~~~~i~~~---~~h~~~V~sl 643 (834)
+.-|++|++++. +.. ..+-.+.+.++-|+|+|+.++|+++-.+ |.|..|.++...-.+..+ .....+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 467999988732 221 1223566788999999999999888654 778888887532212222 1223344889
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCC-Cce---eeEeecCCC----------eeEEEEecCCCEEEEEEcC-CeEEEEEC
Q 003279 644 DFHPSKEDLLCSCDNNSEIRYWSINN-GSC---AGVFKCQSG----------ATQMRFQPRLGRILAAAIE-NYISILDV 708 (834)
Q Consensus 644 ~fspdg~~llasgs~Dg~I~lwDl~s-~~~---i~~~~~~~~----------i~~l~~sp~g~~ll~~s~d-g~I~iwDl 708 (834)
++++++..++++....|.|.++-+.. |.. +..+.+.+. +.+..+.|+++++++..-. ..|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999988887777789999999965 432 334444333 8889999999999988864 78999999
Q ss_pred CCCeEEEEEe---CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCceeEEEeec------CCCceEEEEEeCC
Q 003279 709 ETQVCRLKLQ---GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSC------TGNKFHSCVFHPT 776 (834)
Q Consensus 709 ~t~~~~~~l~---~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~-~~~~~i~~~~~------~~~~I~svafspd 776 (834)
..+.....-. ......+.|.|+|++++..+.. +++|.+|..... ...+.+..+.. .......+.+++|
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 9775432211 2445678999999999988877 999999999874 22333433332 2345678899999
Q ss_pred CCEEEEEEcCC-eEEEEECCC--CeEE---EeccCCCCeEEEEEeCCCCEEEEEecCC-cEEEe
Q 003279 777 FPSLLVIGCYE-TLELWNMTE--NKTL---TLSAHDKLVSSLAASTVNGMVASASHDK-CVKIW 833 (834)
Q Consensus 777 g~~L~sgs~dg-~I~Iwdl~~--~~~~---~l~~h~~~V~~lafspdg~~LaSgs~DG-~I~IW 833 (834)
|++|+++.... .|.+|.+.. +++. ....+....+.+.|++++++|+++..|+ .|.+|
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 99988876533 788887653 4333 2234455589999999999999888653 46655
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.8e-11 Score=119.99 Aligned_cols=155 Identities=19% Similarity=0.288 Sum_probs=111.3
Q ss_pred EEEEEcCCCCEEEEEeC----------CCcEEEEeCC-CCeEEEEec-cCCCCeEEEEECCCCCEEEEE--eCCCeEEEE
Q 003279 556 ESCHFSPDGKLLATGGH----------DKKAVLWCTE-SFTVKSTLE-EHTQWITDVRFSPSLSRLATS--SADRTVRVW 621 (834)
Q Consensus 556 ~sl~fSpdg~~Lasgs~----------Dg~I~IWd~~-t~~~~~~l~-~h~~~I~~l~fspdg~~Latg--s~Dg~I~IW 621 (834)
..+.|+++|++|++-.. -+...||.++ ....+..+. ...++|.+++|+|+++.||+. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35789999988775433 1334555542 223334443 244579999999999987655 356799999
Q ss_pred ecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEe--CCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc
Q 003279 622 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 699 (834)
Q Consensus 622 Dl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs--~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~ 699 (834)
|++. . .+..+ +...+..|.|+|+|+.+++++. ..|.|.+||+++.+.+..+.+ ..+..++|+|+|++|+++..
T Consensus 89 d~~~-~-~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVKG-K-KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCcc-c-EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc-CcEEEEEEcCCCCEEEEEEe
Confidence 9973 2 24444 3567889999999986665542 347899999999888888776 45789999999999999875
Q ss_pred ------CCeEEEEECCCCeEEEE
Q 003279 700 ------ENYISILDVETQVCRLK 716 (834)
Q Consensus 700 ------dg~I~iwDl~t~~~~~~ 716 (834)
|+.++||+.. |+.+..
T Consensus 164 ~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred ccceeccccEEEEEec-CeEeEe
Confidence 6889999985 544443
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.5e-11 Score=138.63 Aligned_cols=266 Identities=16% Similarity=0.238 Sum_probs=185.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe------ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l------~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~ 626 (834)
+++++..+-. +||+.|. --.|.+||+.++..+..+ ..|.. .... .-.+.+++++..-+.+..=+...
T Consensus 8 ~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~--e~~~-~l~~~~~v~~~~~~~v~~~~~~~- 80 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRG--EGKV-KLLSGKIVTCAKSDEVYVKEASN- 80 (967)
T ss_pred ccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccc--cccc-eeccceEEEEEeecceeecchhh-
Confidence 4455555554 5666554 457999999887665443 33400 0000 00234566665544444333321
Q ss_pred CceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCee-----EEEEecCCCEEEEEEcCC
Q 003279 627 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-----QMRFQPRLGRILAAAIEN 701 (834)
Q Consensus 627 ~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~-----~l~~sp~g~~ll~~s~dg 701 (834)
..+....+.|....+..+.. .++....+..+.+||...+.....+.+...+. -+-++++.-++++|+.-+
T Consensus 81 ----~~~~~~s~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~ 155 (967)
T KOG0974|consen 81 ----QIIERFSDWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFG 155 (967)
T ss_pred ----hhhhhccccccccchhhhcc-eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccc
Confidence 11122223344444444434 44556668899999999888777766544422 233455666788888899
Q ss_pred eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003279 702 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 780 (834)
Q Consensus 702 ~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L 780 (834)
.|.+|+.........+.+|.+.|.++.|+.||.++++.+ |.++++|++.+.+... ...-+|...+..++|+|+ .|
T Consensus 156 ~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n--~i 231 (967)
T KOG0974|consen 156 EIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN--RI 231 (967)
T ss_pred cEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc--ee
Confidence 999999884444446889999999999999999999999 8899999999985322 345578999999999999 89
Q ss_pred EEEEcCCeEEEEECCCCeEEEeccCC-CCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 781 LVIGCYETLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 781 ~sgs~dg~I~Iwdl~~~~~~~l~~h~-~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++++.|-+.++|+........+..|. ..|+.++..++...++|++.||.+++|+
T Consensus 232 ~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred EEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 99999999999987766655666664 5799999999999999999999999996
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.9e-10 Score=125.48 Aligned_cols=187 Identities=17% Similarity=0.272 Sum_probs=152.0
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEecc---CCCCeEEEEEC------C--------------CCCEEEEEeCCCeE
Q 003279 562 PDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFS------P--------------SLSRLATSSADRTV 618 (834)
Q Consensus 562 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~---h~~~I~~l~fs------p--------------dg~~Latgs~Dg~I 618 (834)
|-..++|....||.++|||..+++....+.. -++..++..|. | +...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999998887766532 23445555552 1 23467888889999
Q ss_pred EEEecCCCCceeeee-ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEE
Q 003279 619 RVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILA 696 (834)
Q Consensus 619 ~IWDl~s~~~~i~~~-~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~ 696 (834)
.+|++..++...+.. ..|.+.|.++.++.+-. .|.+++.|+.+.+|+...+..++.+.. ...+.+++++||++.+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 999999877544433 56899999999987744 778999999999999999999988886 455889999999999888
Q ss_pred EEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCC-----CCEEEEEe--CCeEEEEEcCC
Q 003279 697 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS-----GEYLASVS--DELVRVWSIGS 751 (834)
Q Consensus 697 ~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spd-----g~~Lasgs--Dg~I~IwDl~s 751 (834)
++ +.|.+||+++++.+..|.+|.++|.++.|..+ |.++.++. +..+.+|-+..
T Consensus 162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 87 79999999999999999999999999999876 77887766 66788887765
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.3e-09 Score=117.30 Aligned_cols=251 Identities=10% Similarity=0.025 Sum_probs=161.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEE-EEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCe-
Q 003279 563 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV- 640 (834)
Q Consensus 563 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~-l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V- 640 (834)
++..+++++.++.|+.+|.++|+.+....... .+.+ ... .+..++.++.++.|+.||..+++... .+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W-~~~~~~~~~~ 179 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLW-TYSRVTPALT 179 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceee-EEccCCCcee
Confidence 46678888899999999999999887664332 2221 112 34567778889999999999876522 222111111
Q ss_pred ----EEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC-----------e-eEEEEecCCCEEEEEEcCCeEE
Q 003279 641 ----MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-----------A-TQMRFQPRLGRILAAAIENYIS 704 (834)
Q Consensus 641 ----~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~-----------i-~~l~~sp~g~~ll~~s~dg~I~ 704 (834)
.+..+. + . .++.+..++.+..+|+++|+.+........ + ....+ .++.+++++.++.++
T Consensus 180 ~~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~ 254 (377)
T TIGR03300 180 LRGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVA 254 (377)
T ss_pred ecCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEE
Confidence 111122 2 2 456777789999999999987765442111 0 11111 356888888999999
Q ss_pred EEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEE
Q 003279 705 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 705 iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-~~~~I~svafspdg~~L~s 782 (834)
.||.++++.+..... . ....+.. ++..+++++ ++.|+.+|..++ +.+..... ......+... .+..|++
T Consensus 255 a~d~~tG~~~W~~~~-~-~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG---~~~W~~~~~~~~~~ssp~i--~g~~l~~ 325 (377)
T TIGR03300 255 ALDLRSGRVLWKRDA-S-SYQGPAV--DDNRLYVTDADGVVVALDRRSG---SELWKNDELKYRQLTAPAV--VGGYLVV 325 (377)
T ss_pred EEECCCCcEEEeecc-C-CccCceE--eCCEEEEECCCCeEEEEECCCC---cEEEccccccCCccccCEE--ECCEEEE
Confidence 999999988776652 1 1122222 345565556 999999999888 33433321 1112222222 3568999
Q ss_pred EEcCCeEEEEECCCCeEE-EeccCCCCe-EEEEEeCCCCEEEEEecCCcEEEe
Q 003279 783 IGCYETLELWNMTENKTL-TLSAHDKLV-SSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 783 gs~dg~I~Iwdl~~~~~~-~l~~h~~~V-~~lafspdg~~LaSgs~DG~I~IW 833 (834)
++.+|.|+++|..+++.+ .+..+...+ ....+. + ..|+.++.||.|+.|
T Consensus 326 ~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 326 GDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 999999999999999988 444444333 333333 3 358888999999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.7e-10 Score=124.54 Aligned_cols=275 Identities=15% Similarity=0.189 Sum_probs=197.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---------------eEEEEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---------------TVKSTLEEHTQWITDVRFSPSLSRLATSSADR 616 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~---------------~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 616 (834)
.....|+.|+....+||+|+.||.++|..+.+. ..-.++.+|++.|.-+.|+.+...|-|+..+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 345899999999999999999999999976532 11245789999999999999999999999999
Q ss_pred eEEEEecCCCCceeeeec-cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEE
Q 003279 617 TVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL 695 (834)
Q Consensus 617 ~I~IWDl~s~~~~i~~~~-~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll 695 (834)
.|.||-+-.+.++...+. ...+.|.+++|..+|.. ++....||.|.+=.++..+.-..--.......+.|++|...++
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence 999999988776433332 34567899999999875 4567778888877766433221111123355789999999999
Q ss_pred EEEcCCeEEEEECCCC-------eEEEEE----eCCCCCEEEEEEc--------CCCCEEEEEe-CCeEEEEEcCCCCCc
Q 003279 696 AAAIENYISILDVETQ-------VCRLKL----QGHKNQVHSVCWN--------TSGEYLASVS-DELVRVWSIGSGSKG 755 (834)
Q Consensus 696 ~~s~dg~I~iwDl~t~-------~~~~~l----~~h~~~I~sl~~s--------pdg~~Lasgs-Dg~I~IwDl~s~~~~ 755 (834)
.+-..|.+.+||.... .+.... ......|..++|. ||...|+++. .|.+.|..-.+...+
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 9999999999997642 222221 2223346677774 4667888888 788888765554322
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---------eEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEec
Q 003279 756 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 826 (834)
Q Consensus 756 ~~i~~~~~~~~~I~svafspdg~~L~sgs~dg---------~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~ 826 (834)
..+ ..+-.+..+.|+++|..|++++.+. .|.+|..-..-.-++......|++++|-..|-.+|.+ .
T Consensus 253 vv~----dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~A-v 327 (1189)
T KOG2041|consen 253 VVV----DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-V 327 (1189)
T ss_pred eEE----ecccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEE-e
Confidence 222 1246788899999999999998753 4666654444344677778899999998777666655 5
Q ss_pred CCcEEE
Q 003279 827 DKCVKI 832 (834)
Q Consensus 827 DG~I~I 832 (834)
|+.|++
T Consensus 328 dsfiyf 333 (1189)
T KOG2041|consen 328 DSFIYF 333 (1189)
T ss_pred cceEEE
Confidence 666654
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.5e-11 Score=131.11 Aligned_cols=280 Identities=15% Similarity=0.201 Sum_probs=194.0
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-------CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 003279 544 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 616 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t-------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 616 (834)
....+.||...|..++--.+.+-+++++.|++|++|.++. ..+..++..|+.+|.++.|..+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 4567889999999998877888899999999999998753 34667788999999999999998888765 88
Q ss_pred eEEEEecCCCCceeeee----ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec------CCCeeEEE
Q 003279 617 TVRVWDTENPDYSLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMR 686 (834)
Q Consensus 617 ~I~IWDl~s~~~~i~~~----~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~------~~~i~~l~ 686 (834)
.|++||.-.+....... .+..+.|.|+.- -+...+++.|+...+|+++|.+.++.+..++. +.-+.+++
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 99999976554321111 122234444432 13344555668899999999999877666653 23478999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEE-EEcCCCCCceeEEEeecC
Q 003279 687 FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRV-WSIGSGSKGECIHELSCT 764 (834)
Q Consensus 687 ~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~I-wDl~s~~~~~~i~~~~~~ 764 (834)
+.+.|++++++-..|.|.+.|.++|+.+..+.........++- |....|+... |.++.| |..-.+ ......+..
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldg---imh~q~kpp 959 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDG---IMHLQDKPP 959 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCC---eeeeccCCC
Confidence 9999999999999999999999999988877655544444442 4555666555 888888 876554 111111111
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-------CeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 765 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTE-------NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 765 ~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~-------~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
..+. -.+-.-|+.+++......+.+|--.. -..++-....+..++++.-|-..-+..|...|.|.+
T Consensus 960 pepa--hflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 960 PEPA--HFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred Ccch--hhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 1111 11223456677777777777774221 111223345677888888887777888888898876
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.9e-10 Score=120.73 Aligned_cols=271 Identities=13% Similarity=0.185 Sum_probs=182.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeC-----------CCcEEEEeCCCCeEEEEeccC--CCCe-EEEEECCCCCEEEEEeCC
Q 003279 550 ASTSKVESCHFSPDGKLLATGGH-----------DKKAVLWCTESFTVKSTLEEH--TQWI-TDVRFSPSLSRLATSSAD 615 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~-----------Dg~I~IWd~~t~~~~~~l~~h--~~~I-~~l~fspdg~~Latgs~D 615 (834)
.|.+ |.-+.|||+.+||+|=+. ...++|||+.+|...+.+... ...+ .-+.||.|++++|--..
T Consensus 248 ~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~- 325 (698)
T KOG2314|consen 248 YHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG- 325 (698)
T ss_pred cCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-
Confidence 3555 889999999999998653 257999999999999887652 2223 34789999999988766
Q ss_pred CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEe-C----CCcEEEEECCCCceeeEeecC-CCeeEEEEec
Q 003279 616 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-N----NSEIRYWSINNGSCAGVFKCQ-SGATQMRFQP 689 (834)
Q Consensus 616 g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs-~----Dg~I~lwDl~s~~~i~~~~~~-~~i~~l~~sp 689 (834)
..|.||+..+-. .+..-.-.-..|....|+|.+. +||-=. . -..+.+..+.++..+++.... -.-..+.|..
T Consensus 326 ~sisIyEtpsf~-lld~Kslki~gIr~FswsP~~~-llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk 403 (698)
T KOG2314|consen 326 NSISIYETPSFM-LLDKKSLKISGIRDFSWSPTSN-LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK 403 (698)
T ss_pred ceEEEEecCcee-eecccccCCccccCcccCCCcc-eEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc
Confidence 468999877521 1211112235688889999865 443221 1 235677777777766655532 2234466777
Q ss_pred CCCEEEEEEc----------CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcC-CCCC
Q 003279 690 RLGRILAAAI----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIG-SGSK 754 (834)
Q Consensus 690 ~g~~ll~~s~----------dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs----Dg~I~IwDl~-s~~~ 754 (834)
.|.+|.+-.. -..+.|+.++........-.-...|...+|.|.|..+++-+ ..++.+|.+. +...
T Consensus 404 ~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~ 483 (698)
T KOG2314|consen 404 SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK 483 (698)
T ss_pred CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc
Confidence 7777665432 12456666665533222223567889999999998877655 3489999988 3433
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEc---CCeEEEEECCCCe--EEEeccCCCCeEEEEEeCCCCEEEEEecC
Q 003279 755 GECIHELSCTGNKFHSCVFHPTFPSLLVIGC---YETLELWNMTENK--TLTLSAHDKLVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 755 ~~~i~~~~~~~~~I~svafspdg~~L~sgs~---dg~I~Iwdl~~~~--~~~l~~h~~~V~~lafspdg~~LaSgs~D 827 (834)
...+..+. ....+.+.|+|.|.++++++- .|.+.++|+.-.. .+....| ...+.+.|.|.|+|++|++.-
T Consensus 484 ~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 484 PSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred hhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeeh
Confidence 34444444 356788999999999887654 5689999998533 3333334 346789999999999999864
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-09 Score=120.41 Aligned_cols=248 Identities=12% Similarity=0.169 Sum_probs=174.1
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCC--EEEE-----EeCCCeEEEEecCCCCc
Q 003279 556 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLAT-----SSADRTVRVWDTENPDY 628 (834)
Q Consensus 556 ~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~--~Lat-----gs~Dg~I~IWDl~s~~~ 628 (834)
++..|+.|..+.|-- ..+.|.+|++.+.+.+.. +-|...|+.+.++|.+. .+|+ .+.-..|+||.+.....
T Consensus 129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhhh-hcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 688999988654432 246899999887554422 23678899999999632 3333 24456899998873221
Q ss_pred --e--eeeeccCCCCeEEEEEccCCCcEEEEEeC--C---------CcEEEEECCCCceeeEeecCCCeeEEEEecCCCE
Q 003279 629 --S--LRTFTGHSTTVMSLDFHPSKEDLLCSCDN--N---------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 693 (834)
Q Consensus 629 --~--i~~~~~h~~~V~sl~fspdg~~llasgs~--D---------g~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ 693 (834)
. .++| ....-..+.|++-|.-+|+.++. | .+++++++....+...+...++|.++.|+++++.
T Consensus 207 ~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 207 HQPVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred cchhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE
Confidence 1 1222 12334457788877777665543 2 3788899986677777777899999999999988
Q ss_pred EEEEE--cCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003279 694 ILAAA--IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNK 767 (834)
Q Consensus 694 ll~~s--~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 767 (834)
|+++. .-..+.|||++. .++..+ ..++-+++-|+|.|++|+.++ -|.|.|||+.+. +++..+....
T Consensus 285 F~VvyGfMPAkvtifnlr~-~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~---K~i~~~~a~~-- 356 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLRG-KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR---KLIAKFKAAN-- 356 (566)
T ss_pred EEEEEecccceEEEEcCCC-CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch---hhccccccCC--
Confidence 76655 357899999974 445444 456778999999999998877 569999999885 6676666543
Q ss_pred eEEEEEeCCCCEEEEEEc------CCeEEEEECCCCeEEEeccCCCCeEEEEEeC
Q 003279 768 FHSCVFHPTFPSLLVIGC------YETLELWNMTENKTLTLSAHDKLVSSLAAST 816 (834)
Q Consensus 768 I~svafspdg~~L~sgs~------dg~I~Iwdl~~~~~~~l~~h~~~V~~lafsp 816 (834)
.+-+.|+|||.+|++++. |+.++||+.....+.. .........++|-|
T Consensus 357 tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~-~~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 357 TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHE-KMFKSELLQVEWRP 410 (566)
T ss_pred ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeeh-hhhhHhHhheeeee
Confidence 456799999999999876 5689999987654432 11122566777765
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.4e-10 Score=131.06 Aligned_cols=145 Identities=22% Similarity=0.367 Sum_probs=120.8
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
..-.+++|+.-+.+-+|....+..+ ..+.||.+.|.++.|+.||+++++.+.|.++++|++
T Consensus 144 ~~~~i~~gsv~~~iivW~~~~dn~p-------------------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i 204 (967)
T KOG0974|consen 144 EELYIASGSVFGEIIVWKPHEDNKP-------------------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPI 204 (967)
T ss_pred cEEEEEeccccccEEEEeccccCCc-------------------ceecccCCceEEEEEccCCcEEEEEecCcceeeeec
Confidence 3457788888888888866633211 157899999999999999999999999999999999
Q ss_pred CCCeEEE-EeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCC-CCeEEEEEccCCCcEEEEEeCC
Q 003279 582 ESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 582 ~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~-~~V~sl~fspdg~~llasgs~D 659 (834)
++.+... +.-+|+..|..++|.|+ +++|++.|-+.++|+.+... +..+.+|. ..|..++..++ ..++++++.|
T Consensus 205 ~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~--l~~y~~h~g~~iw~~~~~~~-~~~~vT~g~D 279 (967)
T KOG0974|consen 205 DSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ--LEVYDEHSGKGIWKIAVPIG-VIIKVTGGND 279 (967)
T ss_pred ccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccce--ehhhhhhhhcceeEEEEcCC-ceEEEeeccC
Confidence 9988876 66789999999999998 99999999999999877533 45777775 56888888776 5588899999
Q ss_pred CcEEEEECCCC
Q 003279 660 SEIRYWSINNG 670 (834)
Q Consensus 660 g~I~lwDl~s~ 670 (834)
+.+++||+...
T Consensus 280 s~lk~~~l~~r 290 (967)
T KOG0974|consen 280 STLKLWDLNGR 290 (967)
T ss_pred cchhhhhhhcc
Confidence 99999998653
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-10 Score=117.97 Aligned_cols=198 Identities=20% Similarity=0.257 Sum_probs=155.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE--EeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCCc-ee
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDY-SL 630 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~--~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s~~~-~i 630 (834)
..++.|++.+.-++++..+|.+.+-+........ .++.|.-.++.+.|+. +.+++++|+.|+.+..||++.++. ..
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 4578899999999999999999977665555544 7899999999999986 456899999999999999995443 33
Q ss_pred eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC-CCceeeEeecCCCeeEEEEecCC-CEEEEEEcCCeEEEEEC
Q 003279 631 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDV 708 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~-s~~~i~~~~~~~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl 708 (834)
.....|...|.+|.-+|....++++|+.|-.|++||.+ -++++..-...++|..+.++|.. ..+++++.-+..+|.+.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~ 283 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDS 283 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEe
Confidence 44667899999999999888999999999999999999 47888877778999999999953 34566666667777777
Q ss_pred CCC--e---EEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEE-EEEcCCC
Q 003279 709 ETQ--V---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVR-VWSIGSG 752 (834)
Q Consensus 709 ~t~--~---~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~-IwDl~s~ 752 (834)
..+ + .....+.|.+-+..-.|.....+|++|+ |+.++ +|-.-++
T Consensus 284 ~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 284 SDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 654 2 3344556777777777766667889887 77755 7755444
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.4e-08 Score=107.68 Aligned_cols=234 Identities=11% Similarity=0.123 Sum_probs=148.6
Q ss_pred EcCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEeccCCC-------CeEEEEECCCCCEEEEEe-C-CCeEEE
Q 003279 560 FSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSPSLSRLATSS-A-DRTVRV 620 (834)
Q Consensus 560 fSpdg~~Lasgs~----------Dg~I~IWd~~t~~~~~~l~~h~~-------~I~~l~fspdg~~Latgs-~-Dg~I~I 620 (834)
+||||+.|+++.. +..|.+||..+++.+..+..... ....++++|||++|++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998887765 78999999999999988864222 334889999999999776 3 689999
Q ss_pred EecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-Ccee-eE---eec-CCCe-eEEEEec-CCC
Q 003279 621 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCA-GV---FKC-QSGA-TQMRFQP-RLG 692 (834)
Q Consensus 621 WDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s-~~~i-~~---~~~-~~~i-~~l~~sp-~g~ 692 (834)
+|+.+.+. +..+.-. +...-+..+.+ .++ +.| .||......+.+ ++.. .. +.. ...+ ..-.|.+ +++
T Consensus 133 vD~~~~kv-v~ei~vp-~~~~vy~t~e~-~~~-~~~-~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~ 207 (352)
T TIGR02658 133 VDLEGKAF-VRMMDVP-DCYHIFPTAND-TFF-MHC-RDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR 207 (352)
T ss_pred EECCCCcE-EEEEeCC-CCcEEEEecCC-ccE-EEe-ecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc
Confidence 99998765 3333321 11111112211 211 122 244444333322 2211 11 111 0000 0114456 666
Q ss_pred EEEEEEcCCeEEEEECCCC-----eEEEEEeC-------CCCCEEEEEEcCCCCEEEEEe-----------CCeEEEEEc
Q 003279 693 RILAAAIENYISILDVETQ-----VCRLKLQG-------HKNQVHSVCWNTSGEYLASVS-----------DELVRVWSI 749 (834)
Q Consensus 693 ~ll~~s~dg~I~iwDl~t~-----~~~~~l~~-------h~~~I~sl~~spdg~~Lasgs-----------Dg~I~IwDl 749 (834)
++++... |.|++.|+... .....+.. ..+.+.-++++++++.+++.. .+.|.++|.
T Consensus 208 ~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 208 LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 6655555 99999996443 22222211 233344599999999888742 258999999
Q ss_pred CCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCeEEEec
Q 003279 750 GSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTLS 803 (834)
Q Consensus 750 ~s~~~~~~i~~~~~~~~~I~svafspdg~-~L~sgs-~dg~I~Iwdl~~~~~~~l~ 803 (834)
.+. +.+..+.. ...+..++++||++ .|++.. .++.|.++|..+++.+...
T Consensus 287 ~t~---kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 287 KTG---KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCC---eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 888 66666654 56889999999999 777666 4678999999999888443
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-08 Score=116.51 Aligned_cols=228 Identities=12% Similarity=0.066 Sum_probs=151.9
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCE-EEEEeCC---CeEEEEecCCCCceeeeeccCCCCeEEEEEccCC
Q 003279 574 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 649 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~-Latgs~D---g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg 649 (834)
..|.+-|.+..... .+.... .+....|+||++. ++..+.+ ..|+++|+.+++. +.+....+.+....|+|||
T Consensus 169 ~~l~~~d~dg~~~~-~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTYQK-VIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCcee-EEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCC
Confidence 35666565544333 333333 7889999999984 6654443 4689999987653 3333355666778899999
Q ss_pred CcEEEEEeCC--CcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEEeCCCCCE
Q 003279 650 EDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQV 724 (834)
Q Consensus 650 ~~llasgs~D--g~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d-g--~I~iwDl~t~~~~~~l~~h~~~I 724 (834)
..++++.+.+ ..|+++|+.++................|+|||+.|+..+.. + .|+++|+.+++....... ..
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~-- 321 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK-- 321 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--
Confidence 9888877655 46888898887755444333334567899999998887753 2 688999988766433321 11
Q ss_pred EEEEEcCCCCEEEEEe-C-------C--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEE
Q 003279 725 HSVCWNTSGEYLASVS-D-------E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLEL 791 (834)
Q Consensus 725 ~sl~~spdg~~Lasgs-D-------g--~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg---~I~I 791 (834)
....|+|||++|+... . + .|.+.|+.++.. ..+... .......|+|||+.|+..+.++ .|.+
T Consensus 322 ~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~----~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 322 NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI----RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe----EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 1248999999988776 2 2 688888877632 222222 2233588999999888876544 5888
Q ss_pred EECCCCeEEEeccCCCCeEEEE
Q 003279 792 WNMTENKTLTLSAHDKLVSSLA 813 (834)
Q Consensus 792 wdl~~~~~~~l~~h~~~V~~la 813 (834)
+++.......+....+.|...+
T Consensus 397 ~~l~g~~~~~l~~~~g~~~~p~ 418 (419)
T PRK04043 397 IRLNYNKSFLFPLKVGKIQSID 418 (419)
T ss_pred EecCCCeeEEeecCCCccCCCC
Confidence 8988877766655555554443
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-09 Score=112.14 Aligned_cols=239 Identities=17% Similarity=0.292 Sum_probs=167.3
Q ss_pred ccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCC------------CCeEEEEEcCCCC-
Q 003279 499 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST------------SKVESCHFSPDGK- 565 (834)
Q Consensus 499 ~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~------------~~V~sl~fSpdg~- 565 (834)
++-...+|++|..++.|.+|.-..... + .+.....+..|. .+|..+.|.+++.
T Consensus 33 f~~~Ge~LatGdkgGRVv~f~r~~~~~-------------~-ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 33 FDHYGERLATGDKGGRVVLFEREKLYK-------------G-EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred eecccceEeecCCCCeEEEeecccccc-------------c-ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc
Confidence 344458999999999999995443322 1 222333333443 4688999998765
Q ss_pred -EEEEEeCCCcEEEEeCCCCeEE-----------------------------------EEe-ccCCCCeEEEEECCCCCE
Q 003279 566 -LLATGGHDKKAVLWCTESFTVK-----------------------------------STL-EEHTQWITDVRFSPSLSR 608 (834)
Q Consensus 566 -~Lasgs~Dg~I~IWd~~t~~~~-----------------------------------~~l-~~h~~~I~~l~fspdg~~ 608 (834)
.++..+.|++|++|.+...... +.+ ..|+.-|++|.++.|...
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et 178 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET 178 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence 5667778999999976421110 111 258888999999999998
Q ss_pred EEEEeCCCeEEEEecCCCCce--eeeeccC-----CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCcee----eEee
Q 003279 609 LATSSADRTVRVWDTENPDYS--LRTFTGH-----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA----GVFK 677 (834)
Q Consensus 609 Latgs~Dg~I~IWDl~s~~~~--i~~~~~h-----~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i----~~~~ 677 (834)
++++ .|=.|.+|+++-.... +.-++.+ ..-|++..|+|....+|+-.+..|+|++.|++....- +.+.
T Consensus 179 ~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 179 FLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred Eeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 8887 6778999998754432 2223333 3468899999988888888888999999999843211 1111
Q ss_pred c-------------CCCeeEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEEEeCCCC------------CE---EEEE
Q 003279 678 C-------------QSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQGHKN------------QV---HSVC 728 (834)
Q Consensus 678 ~-------------~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~-t~~~~~~l~~h~~------------~I---~sl~ 728 (834)
. -..|..+.|++.|+++++-.. -+|++||+. ..+++.++.-|.. .| ..++
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~ 336 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECS 336 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEE
Confidence 0 234788999999998876543 789999994 4566666665532 22 4579
Q ss_pred EcCCCCEEEEEe-CCeEEEEEcCCCC
Q 003279 729 WNTSGEYLASVS-DELVRVWSIGSGS 753 (834)
Q Consensus 729 ~spdg~~Lasgs-Dg~I~IwDl~s~~ 753 (834)
|+.++.++.+|+ .+.+++|++..+.
T Consensus 337 ~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 337 WSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EcCCcceEecccccceEEEecCCCCc
Confidence 999999999999 8899999976553
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-08 Score=113.57 Aligned_cols=252 Identities=13% Similarity=0.079 Sum_probs=161.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEE
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 643 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl 643 (834)
+..|++++.++.|..+|..+|+.+............+.. ++..+++++.++.|+.+|..+++....... ...+.+.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~ 140 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKL--SSEVLSP 140 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeecc--CceeecC
Confidence 568888889999999999999998776544332223333 467888888999999999988775332221 1222221
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCee------EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 003279 644 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT------QMRFQPRLGRILAAAIENYISILDVETQVCRLKL 717 (834)
Q Consensus 644 ~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~------~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l 717 (834)
-.. .+. .++.++.++.|+.||.++++.+..+....... +..+. ++.++++..++.+..+|.++++.+...
T Consensus 141 p~v-~~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 141 PLV-ANG-LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred CEE-ECC-EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeee
Confidence 111 123 34456679999999999999888776543321 11222 357788888899999999999876554
Q ss_pred eCCCC----C------E-EEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003279 718 QGHKN----Q------V-HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 785 (834)
Q Consensus 718 ~~h~~----~------I-~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~ 785 (834)
..... . + .+..+ .+..+++++ ++.++.||..++ +.+..... ....... ..+..|++++.
T Consensus 217 ~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG---~~~W~~~~--~~~~~p~--~~~~~vyv~~~ 287 (377)
T TIGR03300 217 RVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSG---RVLWKRDA--SSYQGPA--VDDNRLYVTDA 287 (377)
T ss_pred ccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCC---cEEEeecc--CCccCce--EeCCEEEEECC
Confidence 31100 0 1 11111 234555555 999999999888 33333331 1111222 34567888899
Q ss_pred CCeEEEEECCCCeEEE-eccC-CCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 786 YETLELWNMTENKTLT-LSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 786 dg~I~Iwdl~~~~~~~-l~~h-~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++.|+.+|..+++.+- .... ...+..... .+..|++++.||.|++||
T Consensus 288 ~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 288 DGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred CCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 9999999999998772 2121 122223232 366888899999998875
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.2e-08 Score=108.44 Aligned_cols=281 Identities=13% Similarity=0.093 Sum_probs=187.5
Q ss_pred ccccccCC-CeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEEEeccCCCC--eEEEEECCCC
Q 003279 531 GRSAEVGK-GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQW--ITDVRFSPSL 606 (834)
Q Consensus 531 ~~~~~~~~-g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~-t~~~~~~l~~h~~~--I~~l~fspdg 606 (834)
+.+|-... |.++..+-.+.+| |+|-.+-. ++..+....||.=.||.++ +|+-+ +.|+.. -.+=..+.||
T Consensus 206 GklWis~d~g~tFeK~vdl~~~---vS~PmIV~-~RvYFlsD~eG~GnlYSvdldGkDl---rrHTnFtdYY~R~~nsDG 278 (668)
T COG4946 206 GKLWISSDGGKTFEKFVDLDGN---VSSPMIVG-ERVYFLSDHEGVGNLYSVDLDGKDL---RRHTNFTDYYPRNANSDG 278 (668)
T ss_pred ceEEEEecCCcceeeeeecCCC---cCCceEEc-ceEEEEecccCccceEEeccCCchh---hhcCCchhccccccCCCC
Confidence 34444443 4478888888887 43433332 3333445556655555443 23322 223321 2233345688
Q ss_pred CEEEEEeCCCeEEEEecCCCCceeeeec-----cC-----CCCeEEEE-EccCCCcEEEEEeCCCcEEEEECCCCceeeE
Q 003279 607 SRLATSSADRTVRVWDTENPDYSLRTFT-----GH-----STTVMSLD-FHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 675 (834)
Q Consensus 607 ~~Latgs~Dg~I~IWDl~s~~~~i~~~~-----~h-----~~~V~sl~-fspdg~~llasgs~Dg~I~lwDl~s~~~i~~ 675 (834)
+.++.. ..|.|++||..+.......+. .. ..+..-+. |++-...+++..+ .|...+.+...+-.+.
T Consensus 279 krIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq- 355 (668)
T COG4946 279 KRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQ- 355 (668)
T ss_pred cEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEE-
Confidence 887765 567899999987653221111 00 01111121 4443444665666 5677777766554443
Q ss_pred eecCCCeeEEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC
Q 003279 676 FKCQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 753 (834)
Q Consensus 676 ~~~~~~i~~l~~sp~g~~ll~~s~dg-~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~ 753 (834)
+.+..+|.-..+.-+...++.|..|| .+-|||.++++... +...-+.|.++..+++|++++++. ...|.++|+.++.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 34456688888888888899999998 99999999887544 445678899999999999999988 5589999999983
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC----eEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEe
Q 003279 754 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE----TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 754 ~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg----~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs 825 (834)
....-....+-|+.++|||++++|+.+--+| .|++||+.+++........+.=.+-+|.||+++|.--+
T Consensus 435 ---v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 435 ---VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ---eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 3223334567799999999999999988777 79999999999987776666677889999999876544
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2e-10 Score=129.25 Aligned_cols=279 Identities=18% Similarity=0.316 Sum_probs=195.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEEecc-CCCCeEEEEECCC--CCEEEEEeCCCeEEEEecCCCC
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEE-HTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPD 627 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t-~~~~~~l~~-h~~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~s~~ 627 (834)
.+.+.++.++|.|+-+|.++.-| +.+.|++. +.+..-+.. ..-.|-++.|++. ..+-++......-.+|++....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 34578899999999999998866 44556553 344333321 1223677888875 3345555555567789886432
Q ss_pred --ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-eeeEee-cCCCeeEEEEecCCCEEEEEEcCCeE
Q 003279 628 --YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQPRLGRILAAAIENYI 703 (834)
Q Consensus 628 --~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~-~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I 703 (834)
..-..+.+|...|+.+.|+|....++++|+.|-.+..||+++.. .+..+. -+.....+.|+.....+++.+..+.|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 33456678999999999999999999999999999999999754 333333 36778899999988899999999999
Q ss_pred EEEECCCC-eEEEEEeCCCCCEEEEEEcCC--CCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003279 704 SILDVETQ-VCRLKLQGHKNQVHSVCWNTS--GEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 780 (834)
Q Consensus 704 ~iwDl~t~-~~~~~l~~h~~~I~sl~~spd--g~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L 780 (834)
.+||++.+ .++..+++|...|+.+.|..- +..+.+..|++|+.||...... .-........+|....+-|-|.-.
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~--e~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT--ESKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc--ccceeccccCcceeccccccCcee
Confidence 99999987 678888999999999998752 3444444499999999986532 222223345667767777765433
Q ss_pred EEE--EcCCeEEE---------EECCCC-eEE-EeccCCCCeEEEEEeCCC--------C--EEEEEecCCcEEEe
Q 003279 781 LVI--GCYETLEL---------WNMTEN-KTL-TLSAHDKLVSSLAASTVN--------G--MVASASHDKCVKIW 833 (834)
Q Consensus 781 ~sg--s~dg~I~I---------wdl~~~-~~~-~l~~h~~~V~~lafspdg--------~--~LaSgs~DG~I~IW 833 (834)
++- -.+..+.+ |+..++ ..+ ++.+|+..|...-|-..+ + .|+|-+.|..+++|
T Consensus 261 ~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 261 CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 221 11223333 443332 233 788999998777664322 2 79999999999999
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.8e-09 Score=118.75 Aligned_cols=188 Identities=19% Similarity=0.310 Sum_probs=150.2
Q ss_pred CCCCEEEEEeCCCeEEEEecCCCCceeeeec---cCCCCeEEEEEc------c-------------CCCcEEEEEeCCCc
Q 003279 604 PSLSRLATSSADRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFH------P-------------SKEDLLCSCDNNSE 661 (834)
Q Consensus 604 pdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~---~h~~~V~sl~fs------p-------------dg~~llasgs~Dg~ 661 (834)
|...++|....||.++|||...++.. ..+. .-.+..++..|. | .+..+++-|...|.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~-~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQ-QEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceee-eeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 44678999999999999999876642 2221 122344444442 2 13456778888999
Q ss_pred EEEEECCCCceeeEee---cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 003279 662 IRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 738 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~---~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Las 738 (834)
|.+|++..++....+. +.+.+.++.++.+-..|.+++.|..+..|+......+..+......+.+++++|||..+++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 9999999999988887 3567899999999999999999999999999999999999998999999999999998887
Q ss_pred EeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC-----CCEEEEEEc-CCeEEEEECCC
Q 003279 739 VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT-----FPSLLVIGC-YETLELWNMTE 796 (834)
Q Consensus 739 gsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspd-----g~~L~sgs~-dg~I~Iwdl~~ 796 (834)
++ +.|++||+++. +.+..|.+|.++|.++.|.-+ |.+++++.. +..|.+|-+..
T Consensus 162 as-~~ik~~~~~~k---evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS-RQIKVLDIETK---EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc-ceEEEEEccCc---eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 65 67999999998 899999999999999999877 666665544 34566665543
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.5e-09 Score=114.30 Aligned_cols=271 Identities=18% Similarity=0.201 Sum_probs=186.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC--------------
Q 003279 551 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-------------- 616 (834)
Q Consensus 551 H~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg-------------- 616 (834)
-.-++..++|||.|++|++... ..|.+|+...+..+..+. | ..|..+.|+|.++||.|=+...
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhc-cceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 4456888999999999998765 468999988877665654 4 3599999999999999976533
Q ss_pred -eEEEEecCCCCceeeeeccCCCC--eE-EEEEccCCCcEEEEEeCCCcEEEEECCCCcee-eEeec--CCCeeEEEEec
Q 003279 617 -TVRVWDTENPDYSLRTFTGHSTT--VM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKC--QSGATQMRFQP 689 (834)
Q Consensus 617 -~I~IWDl~s~~~~i~~~~~h~~~--V~-sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i-~~~~~--~~~i~~l~~sp 689 (834)
.+.+||+.++.. +..+.....+ .+ -+.|+-+..+.+-.. ...++|+++ ++... ..+.. ..++....|+|
T Consensus 108 n~~~vwd~~sg~i-v~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv--~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP 183 (561)
T COG5354 108 NNVFVWDIASGMI-VFSFNGISQPYLGWPVLKFSIDDKYVARVV--GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISP 183 (561)
T ss_pred CceeEEeccCcee-EeeccccCCcccccceeeeeecchhhhhhc--cCeEEEEec-CCccccCchhhccccceeeEEecC
Confidence 499999998664 6666655544 44 567887765444332 457899997 33221 11111 36688888988
Q ss_pred CCCE--EEEE-----EcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe------------CCeEEEEEcC
Q 003279 690 RLGR--ILAA-----AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS------------DELVRVWSIG 750 (834)
Q Consensus 690 ~g~~--ll~~-----s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs------------Dg~I~IwDl~ 750 (834)
.++. |++- +..+.+++|.+..+..+....-....-..+.|.+.|++|++-- +..++|+++.
T Consensus 184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence 6432 3332 2356899999987765544332233335688999998876532 2468888887
Q ss_pred CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc--CCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecC-
Q 003279 751 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC--YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD- 827 (834)
Q Consensus 751 s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~--dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~D- 827 (834)
.. .+.......++|..++|.|.++.+++++. .-.+.++|++.+ +.+......-..+.|+|.+++++.++-|
T Consensus 264 e~----~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~n 337 (561)
T COG5354 264 ER----SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDN 337 (561)
T ss_pred cc----ccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCc
Confidence 43 22222245789999999999988887774 448999999888 4444555666677888888888887755
Q ss_pred --CcEEEeC
Q 003279 828 --KCVKIWK 834 (834)
Q Consensus 828 --G~I~IWd 834 (834)
|.|-|||
T Consensus 338 l~gni~i~~ 346 (561)
T COG5354 338 LQGNIEIFD 346 (561)
T ss_pred cccceEEec
Confidence 5677765
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.5e-09 Score=113.95 Aligned_cols=270 Identities=16% Similarity=0.211 Sum_probs=185.1
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC-----------CCeEEEEecC
Q 003279 556 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----------DRTVRVWDTE 624 (834)
Q Consensus 556 ~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~-----------Dg~I~IWDl~ 624 (834)
+-+.|||.|.||+|--. .-|.+|--++...+..+. |.+ |.-+.|||+.+||+|-+. ...|+|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk-~GI~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHK-QGIALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEec-cceeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 45899999999998765 458899888877777774 654 899999999999998654 2579999999
Q ss_pred CCCceeeeecc--CCCCeE-EEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcC
Q 003279 625 NPDYSLRTFTG--HSTTVM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 625 s~~~~i~~~~~--h~~~V~-sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~d 700 (834)
++.. .+.+.. ....+. -+.|+.|++++.... ...|.||+..+-.++..-. ...+|....|+|.+..|+.-...
T Consensus 291 tG~l-krsF~~~~~~~~~WP~frWS~DdKy~Arm~--~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 291 TGLL-KRSFPVIKSPYLKWPIFRWSHDDKYFARMT--GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred ccch-hcceeccCCCccccceEEeccCCceeEEec--cceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 9765 444443 222333 358999877444333 3679999887643332222 14678999999998877765432
Q ss_pred -----CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-----------eEEEEEcCCCCCceeEEEeecC
Q 003279 701 -----NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-----------LVRVWSIGSGSKGECIHELSCT 764 (834)
Q Consensus 701 -----g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg-----------~I~IwDl~s~~~~~~i~~~~~~ 764 (834)
..+.+..+.++..+++..-|.-.=..+.|-.+|.+|+.--|. .+-|+.++.... ++..+ .-
T Consensus 368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI--pve~v-el 444 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI--PVEVV-EL 444 (698)
T ss_pred ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC--Cceee-ec
Confidence 367888888887776655454444467888899999875422 355666665432 22222 23
Q ss_pred CCceEEEEEeCCCCEEEEEEcCC---eEEEEECCC-CeEEEec--cCCCCeEEEEEeCCCCEEEEEe---cCCcEEEeC
Q 003279 765 GNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTE-NKTLTLS--AHDKLVSSLAASTVNGMVASAS---HDKCVKIWK 834 (834)
Q Consensus 765 ~~~I~svafspdg~~L~sgs~dg---~I~Iwdl~~-~~~~~l~--~h~~~V~~lafspdg~~LaSgs---~DG~I~IWd 834 (834)
...|...+|.|.|..+++.+.+. ++.+|.+++ .....+. -.....+.+.|+|.|++++.+. ..|.+.++|
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 56788999999999888776654 789998873 2222111 1235677899999999888765 456777665
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.4e-09 Score=112.08 Aligned_cols=279 Identities=14% Similarity=0.200 Sum_probs=185.7
Q ss_pred cCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003279 500 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 579 (834)
Q Consensus 500 ~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IW 579 (834)
...+.-+.+.+.|.++++|+-.+...-. ..+ ...-..+++++.+.++...|++|-..|++.-+
T Consensus 33 ~~~e~gv~~~s~drtvrv~lkrds~q~w---------------psI--~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 33 IPKEEGVISVSEDRTVRVWLKRDSGQYW---------------PSI--YHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred ccCCCCeEEccccceeeeEEeccccccC---------------chh--hhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 4445556788999999999877654321 111 12345679999999999999999999999988
Q ss_pred eCC----CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC------------------------------
Q 003279 580 CTE----SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN------------------------------ 625 (834)
Q Consensus 580 d~~----t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s------------------------------ 625 (834)
.+. .....+....|...|..+.|+-..+++++.+.|..+.---.+.
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~g 175 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSG 175 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccccc
Confidence 553 3445556667888999998888777777777665432111110
Q ss_pred ----------CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC--ceeeEeecCCCeeEEEEecCCCE
Q 003279 626 ----------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKCQSGATQMRFQPRLGR 693 (834)
Q Consensus 626 ----------~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~--~~i~~~~~~~~i~~l~~sp~g~~ 693 (834)
.-..+.++.+|.+.+.+++|.+.. .++++|..|..|.+||+.-. .....+.+...+..+.+.+--..
T Consensus 176 qvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~ 254 (404)
T KOG1409|consen 176 QITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQ 254 (404)
T ss_pred ceEEEEEeecCCceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhee
Confidence 012356778899999999999874 47789999999999999643 34444556777888888887788
Q ss_pred EEEEEcCCeEEEEECCCCeEEEE-Ee----------------------------CC-----CCCEEEEEEcCCCCEEEEE
Q 003279 694 ILAAAIENYISILDVETQVCRLK-LQ----------------------------GH-----KNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 694 ll~~s~dg~I~iwDl~t~~~~~~-l~----------------------------~h-----~~~I~sl~~spdg~~Lasg 739 (834)
+++++.||.|.+||++....... .. -| ...|...+-+....+...+
T Consensus 255 l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg 334 (404)
T KOG1409|consen 255 LISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMG 334 (404)
T ss_pred eeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccccccc
Confidence 99999999999999976432210 00 00 0111112222222222222
Q ss_pred eCCeEEEEEcCCC----CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 740 SDELVRVWSIGSG----SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 740 sDg~I~IwDl~s~----~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
.+-.+++.|--.. ....++..+......|+.+.+..+-..|+++|.|..|+|||++.
T Consensus 335 ~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 335 FEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred ceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 2334454442211 01123444444556788888888888999999999999999864
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.3e-08 Score=124.21 Aligned_cols=233 Identities=11% Similarity=0.115 Sum_probs=156.8
Q ss_pred EEEEECCC-CCEEEEEeCCCeEEEEecCCCCceeeeecc--C------------CCCeEEEEEccCCCcEEEEEeCCCcE
Q 003279 598 TDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTG--H------------STTVMSLDFHPSKEDLLCSCDNNSEI 662 (834)
Q Consensus 598 ~~l~fspd-g~~Latgs~Dg~I~IWDl~s~~~~i~~~~~--h------------~~~V~sl~fspdg~~llasgs~Dg~I 662 (834)
..++++++ +.++++-+..+.|++||... .. +..+.+ . -.....|+++++++.++++-..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 46788774 56677777788999999864 32 222221 1 12357899998877666555556789
Q ss_pred EEEECCCCceeeEeec-----------------CCCeeEEEEecCCCEE-EEEEcCCeEEEEECCCCeEEEEEeCC----
Q 003279 663 RYWSINNGSCAGVFKC-----------------QSGATQMRFQPRLGRI-LAAAIENYISILDVETQVCRLKLQGH---- 720 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~~-----------------~~~i~~l~~sp~g~~l-l~~s~dg~I~iwDl~t~~~~~~l~~h---- 720 (834)
+++|+.++........ -.....++++|+++.+ ++...++.|++||..++.... +.+.
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER 727 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence 9999987653322110 1124578999955555 445567899999998875432 2111
Q ss_pred -----------CCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEE-----------Eeec--------CCCce
Q 003279 721 -----------KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH-----------ELSC--------TGNKF 768 (834)
Q Consensus 721 -----------~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~-----------~~~~--------~~~~I 768 (834)
-.....|+|+|++..|+++. ++.|++||+.++.. ..+. .+.. .....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS-RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecccccCcccccccCCCCchhhhhccCC
Confidence 12346799999998666555 78999999987632 1110 0000 01124
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccC--------------CCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 769 HSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH--------------DKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 769 ~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h--------------~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
..++++++|..+++-..++.|++||..++.+..+.+. -.....|+++++|+++++-+.++.|++||
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 6889999998777777788999999998877654332 13578899999999999888999999996
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=112.28 Aligned_cols=239 Identities=17% Similarity=0.329 Sum_probs=163.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-----EEEEeccCC------------CCeEEEEECCCC--CEEEEE
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEHT------------QWITDVRFSPSL--SRLATS 612 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~-----~~~~l~~h~------------~~I~~l~fspdg--~~Latg 612 (834)
.+.|+++.|...|.||++|...|.|.+|.-+... ....+.+|. ..|..|.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4569999999999999999999999999754322 222344443 357888888753 356777
Q ss_pred eCCCeEEEEecCCCCc-----------------------------------------eeeee-ccCCCCeEEEEEccCCC
Q 003279 613 SADRTVRVWDTENPDY-----------------------------------------SLRTF-TGHSTTVMSLDFHPSKE 650 (834)
Q Consensus 613 s~Dg~I~IWDl~s~~~-----------------------------------------~i~~~-~~h~~~V~sl~fspdg~ 650 (834)
+.|++|++|.+..... +.+.+ ..|...|.++.|..|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 7999999998864310 01112 35777889999998877
Q ss_pred cEEEEEeCCCcEEEEECCCCc-eeeEeec--------CCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCe------EE
Q 003279 651 DLLCSCDNNSEIRYWSINNGS-CAGVFKC--------QSGATQMRFQPRL-GRILAAAIENYISILDVETQV------CR 714 (834)
Q Consensus 651 ~llasgs~Dg~I~lwDl~s~~-~i~~~~~--------~~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~~------~~ 714 (834)
.++ ++ .|-.|.+|+++--. +...... ..-|++..|+|.. ..+...+..|.|++.|++... ..
T Consensus 186 t~l-Sa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 186 TLL-SA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred eee-ec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 555 44 48899999987432 2222111 1237888999964 556677778999999998321 11
Q ss_pred E----------EEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCC------------Cce---E
Q 003279 715 L----------KLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG------------NKF---H 769 (834)
Q Consensus 715 ~----------~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~------------~~I---~ 769 (834)
. -+.+-...|..+.|+++|+|+++-+--+|+|||++... .++.++..|. ..| .
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k--~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK--NPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc--CCceeechHHHHHHHHHhhhhccceeeeE
Confidence 1 11223356788999999999998888899999998764 4555554332 122 4
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 770 SCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 770 svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
.+.|+.|...+++|+..+..-||-.
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEEecCCcccccccccccceeeecc
Confidence 5788888888888887776666653
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.7e-08 Score=122.03 Aligned_cols=238 Identities=12% Similarity=0.147 Sum_probs=160.7
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeEEEEecc--C------------CCCeEEEEECCCCCEEEEEeC-CCeEE
Q 003279 556 ESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEE--H------------TQWITDVRFSPSLSRLATSSA-DRTVR 619 (834)
Q Consensus 556 ~sl~fSpd-g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~--h------------~~~I~~l~fspdg~~Latgs~-Dg~I~ 619 (834)
..++++++ +.++++-+.++.|++||... ..+..+.+ . -.....|++++++..|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35788874 55666667788999999764 44444322 1 123578999998877666554 56899
Q ss_pred EEecCCCCceeeeeccC-----------------CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec----
Q 003279 620 VWDTENPDYSLRTFTGH-----------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---- 678 (834)
Q Consensus 620 IWDl~s~~~~i~~~~~h-----------------~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~---- 678 (834)
++|+.++. +.++.+. -....+++|+|++..++++.+.++.|++||..++........
T Consensus 650 ~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 99987643 3333210 123468999997677888888889999999987754321100
Q ss_pred -----------CCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeC-------------C--------CCCEE
Q 003279 679 -----------QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG-------------H--------KNQVH 725 (834)
Q Consensus 679 -----------~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~-------------h--------~~~I~ 725 (834)
-.....++++|+++.|+++.. ++.|++||+.++.......+ + -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 123456999999986666655 58999999987643221100 0 11245
Q ss_pred EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-------------cCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003279 726 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------------CTGNKFHSCVFHPTFPSLLVIGCYETLEL 791 (834)
Q Consensus 726 sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-------------~~~~~I~svafspdg~~L~sgs~dg~I~I 791 (834)
+++++++|.++++.. ++.|++||..++. ...... ..-.....++++++|..+++-+.++.|++
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~---v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKR---VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCe---EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 889999998777766 8899999998762 221111 11235678999999987777777889999
Q ss_pred EECCCCeE
Q 003279 792 WNMTENKT 799 (834)
Q Consensus 792 wdl~~~~~ 799 (834)
||+.+++.
T Consensus 885 id~~~~~~ 892 (1057)
T PLN02919 885 LDLNKGEA 892 (1057)
T ss_pred EECCCCcc
Confidence 99988764
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.1e-08 Score=112.84 Aligned_cols=201 Identities=10% Similarity=0.041 Sum_probs=136.5
Q ss_pred CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCc-EEEEEeC--CCcEEEEECCCCceeeEeecCCCeeEEEEecCCC
Q 003279 616 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDN--NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 692 (834)
Q Consensus 616 g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~-llasgs~--Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~ 692 (834)
..|.+-|.+... .+.+.... .+....|+|+++. ++++... +..|+++|+.+++........+......|+|||+
T Consensus 169 ~~l~~~d~dg~~--~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY--QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc--eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCC
Confidence 356665665432 33333333 7888999999986 4433332 3579999999888776665556667788999999
Q ss_pred EEEEEEc---CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC----eEEEEEcCCCCCceeEEEeecCC
Q 003279 693 RILAAAI---ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE----LVRVWSIGSGSKGECIHELSCTG 765 (834)
Q Consensus 693 ~ll~~s~---dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg----~I~IwDl~s~~~~~~i~~~~~~~ 765 (834)
.++.... +..|+++|+.++... .+..+........|+|||+.|+..++. .|+++|+.++.... + ....
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-l---t~~g 320 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ-V---VFHG 320 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe-C---ccCC
Confidence 8876654 357999999887643 344344434567899999988887733 78999998764311 1 1111
Q ss_pred CceEEEEEeCCCCEEEEEEcC---------CeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecC
Q 003279 766 NKFHSCVFHPTFPSLLVIGCY---------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 766 ~~I~svafspdg~~L~sgs~d---------g~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~D 827 (834)
.. ...|+|+|+.|+..+.. ..|++.|+.++....+... .......|+|||+.|+..+.+
T Consensus 321 ~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 321 KN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred Cc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence 11 24899999999887754 2788999998887665543 234468999999987766543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.5e-08 Score=112.27 Aligned_cols=306 Identities=11% Similarity=0.170 Sum_probs=198.0
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
..+++||+.|+.+++.....+.......+ ......+..-.++.||.+.|.-+.|+.+...|-+...+|.|.||-+-
T Consensus 26 ~gyIAcgG~dGlLKVlKl~t~t~d~~~~g----laa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmly 101 (1189)
T KOG2041|consen 26 SGYIACGGADGLLKVLKLGTDTTDLNKSG----LAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLY 101 (1189)
T ss_pred CCeEEeccccceeEEEEccccCCcccccc----cccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeee
Confidence 37999999999999985444332222221 11223445567899999999999999999999999999999999887
Q ss_pred CCeEEEEe--ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc--------------------------------
Q 003279 583 SFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-------------------------------- 628 (834)
Q Consensus 583 t~~~~~~l--~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~-------------------------------- 628 (834)
.+.-...+ ....+.|.+++|+.||..|+....||.|.|=.++..+.
T Consensus 102 kgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~h 181 (1189)
T KOG2041|consen 102 KGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETH 181 (1189)
T ss_pred cccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEE
Confidence 76544322 23456688999999999998888888776544432110
Q ss_pred ---------------e-e---eeeccCCCCeEEEEEc--------cCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC
Q 003279 629 ---------------S-L---RTFTGHSTTVMSLDFH--------PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG 681 (834)
Q Consensus 629 ---------------~-i---~~~~~h~~~V~sl~fs--------pdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~ 681 (834)
+ + ..+......|..+.|. |+ .-.|++|..+|.+.+..-.+......+..+-.
T Consensus 182 lydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pd-rP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~ 260 (1189)
T KOG2041|consen 182 LYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPD-RPRLAVCYANGRMQIMRSENDPEPVVVDTGMK 260 (1189)
T ss_pred EecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCC-CCEEEEEEcCceehhhhhcCCCCCeEEecccE
Confidence 0 0 0011112234455553 23 33566777788887776655555555565677
Q ss_pred eeEEEEecCCCEEEEEEcCC---------eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003279 682 ATQMRFQPRLGRILAAAIEN---------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 752 (834)
Q Consensus 682 i~~l~~sp~g~~ll~~s~dg---------~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~ 752 (834)
+..+.|+++|..+++++.+. .|.+|. .-|+.+.+++.....|++++|-..|-.++.+-|+.|++=+++..
T Consensus 261 ~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIRP~ 339 (1189)
T KOG2041|consen 261 IVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIRPE 339 (1189)
T ss_pred eecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEEecceEEEEeeccc
Confidence 88999999999999988642 344443 34677788888888999999999999999988999999988765
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcE
Q 003279 753 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV 830 (834)
Q Consensus 753 ~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I 830 (834)
-..-.+ . ..+.|--.++.+ ..-.|.+||..+.+.. +... ...+++|..+.-.|++-.+||.|
T Consensus 340 ykWgy~---e------~TvVy~y~~~e~----p~y~i~Fwdtk~nek~vK~V~---~~~~~a~~~ehCvL~~~~d~~~i 402 (1189)
T KOG2041|consen 340 YKWGYI---E------ETVVYVYQKEEL----PQYGIMFWDTKTNEKTVKTVT---HFENMAFYREHCVLINRQDDGVI 402 (1189)
T ss_pred ceEEEe---e------eEEEEEEccCCC----cceEEEEEecccChhhhhhhc---ceeehheecccEEEEeccccCCC
Confidence 211111 0 011111111000 0115889998877644 2222 24456666555556665566554
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.7e-08 Score=119.32 Aligned_cols=280 Identities=14% Similarity=0.199 Sum_probs=185.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEE----eCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC-
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLW----CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE- 624 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IW----d~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~- 624 (834)
...+.|.++.|-++..-|+.+..+|.|.++ +..+... .....-...|.+++||||...|+..+.+++|.+.+-.
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 345789999999999999999999999999 5554332 2333445789999999999999999999988876432
Q ss_pred ---------C---CC-ce--------ee-------------------------eeccCCCCeEEEEEccCCCcEEEEEe-
Q 003279 625 ---------N---PD-YS--------LR-------------------------TFTGHSTTVMSLDFHPSKEDLLCSCD- 657 (834)
Q Consensus 625 ---------s---~~-~~--------i~-------------------------~~~~h~~~V~sl~fspdg~~llasgs- 657 (834)
. +. .. -. .+. +.+.-..|+|-.||.+++++.-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEE
Confidence 0 00 00 00 011 3335567899999986655543
Q ss_pred -C---CCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEc---CCeEEEEECCCCeEEEEE----eCCCCCEE
Q 003279 658 -N---NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI---ENYISILDVETQVCRLKL----QGHKNQVH 725 (834)
Q Consensus 658 -~---Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~---dg~I~iwDl~t~~~~~~l----~~h~~~I~ 725 (834)
. -..|+||+-+ |....+... .+--.+++|-|.|+.|++.-. ...|.+|.-+ |.....| ......|.
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~ 308 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVI 308 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceee
Confidence 2 2579999977 655444432 233467899999998888776 2356666543 3222222 23456899
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCE-EEEEEcCCeEEEEEC----CCC--
Q 003279 726 SVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPS-LLVIGCYETLELWNM----TEN-- 797 (834)
Q Consensus 726 sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~-~~~I~svafspdg~~-L~sgs~dg~I~Iwdl----~~~-- 797 (834)
.+.|++|+.+|+....+.|.+|-..+.. .....++... ...+..+.|+|.... |.+.+.++.+..+++ ..+
T Consensus 309 ~l~Wn~ds~iLAv~~~~~vqLWt~~NYH-WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~ 387 (928)
T PF04762_consen 309 ELAWNSDSEILAVWLEDRVQLWTRSNYH-WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPG 387 (928)
T ss_pred EEEECCCCCEEEEEecCCceEEEeeCCE-EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCC
Confidence 9999999999999876669999987652 1222333322 233455899997654 555555465544332 111
Q ss_pred --------------eEEE----------------eccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 798 --------------KTLT----------------LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 798 --------------~~~~----------------l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
..+. .......|.+++|++++..+|+-..||.|.+|+
T Consensus 388 ~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 388 SSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred CCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 1110 112356799999999998899999999999874
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-08 Score=104.01 Aligned_cols=242 Identities=12% Similarity=0.106 Sum_probs=164.4
Q ss_pred CCCeEEEEEcC---CCC-EEEEEeCCCcEEEEeCCCCeEEEEeccCC------CCeEEEEECCCCCEEEEEeCCCeEEEE
Q 003279 552 TSKVESCHFSP---DGK-LLATGGHDKKAVLWCTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSSADRTVRVW 621 (834)
Q Consensus 552 ~~~V~sl~fSp---dg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~------~~I~~l~fspdg~~Latgs~Dg~I~IW 621 (834)
+..+..+.|.. +|. .|+-+..+|.|.+|..........+.+-. ....++.|++.+..++++..+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 34466666654 455 56667778999999766544444443221 124578899989999999999999855
Q ss_pred ecCCCCc-eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC-CCceeeE--eecCCCeeEEEEec-CCCEEEE
Q 003279 622 DTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGV--FKCQSGATQMRFQP-RLGRILA 696 (834)
Q Consensus 622 Dl~s~~~-~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~-s~~~i~~--~~~~~~i~~l~~sp-~g~~ll~ 696 (834)
+...... .+..++.|.-+++...|+.....++++|++|+.+..||++ .++.+.. ..+..+|.++.-+| ...+|++
T Consensus 149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T 228 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT 228 (339)
T ss_pred ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence 5543322 2357889999999999998888899999999999999999 3444433 23567888888876 4678999
Q ss_pred EEcCCeEEEEECCC-CeEEEEEeCCCCCEEEEEEcCC--CCEEEEEeCCeEEEEEcCCCCCc--eeEEEeecCCCceEEE
Q 003279 697 AAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTS--GEYLASVSDELVRVWSIGSGSKG--ECIHELSCTGNKFHSC 771 (834)
Q Consensus 697 ~s~dg~I~iwDl~t-~~~~~~l~~h~~~I~sl~~spd--g~~LasgsDg~I~IwDl~s~~~~--~~i~~~~~~~~~I~sv 771 (834)
|+.|..|++||.++ ++++..-. -.+.|..+.++|. +.+|+++--+-++|-++...... ........|..-+..-
T Consensus 229 GsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~ 307 (339)
T KOG0280|consen 229 GSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGG 307 (339)
T ss_pred eccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeecc
Confidence 99999999999995 46655443 4478999999985 34556666444677776654321 1333444555555555
Q ss_pred EEeCCCCEEEEEEc-CCeEE-EEEC
Q 003279 772 VFHPTFPSLLVIGC-YETLE-LWNM 794 (834)
Q Consensus 772 afspdg~~L~sgs~-dg~I~-Iwdl 794 (834)
.|.....+|++++. |..|+ +|-.
T Consensus 308 DWd~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 308 DWDSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred ccccccceeeeeeccccceeeeeee
Confidence 66444456777654 33433 5543
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.8e-08 Score=110.02 Aligned_cols=211 Identities=15% Similarity=0.180 Sum_probs=154.6
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCC------------CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECC---
Q 003279 540 FTFTEFQLIPASTSKVESCHFSPD------------GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--- 604 (834)
Q Consensus 540 ~~~~~~~~l~gH~~~V~sl~fSpd------------g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fsp--- 604 (834)
..+..+.++.-|...|+.+.|.|- .-+||++...|.|.|||...+..+..+..|.++|.+++|-+
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD 122 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence 345668888999999999999872 12578888899999999999999999999999999999977
Q ss_pred CC-CEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-------CceeeEe
Q 003279 605 SL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGVF 676 (834)
Q Consensus 605 dg-~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s-------~~~i~~~ 676 (834)
+. ..|+.-....+|.+|+..++.. +..+........|+.+.|-...-++.-+..|.+.+.+.-. ++....-
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdtG~k-~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~ 201 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDTGEK-FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT 201 (1062)
T ss_pred cchheeEEecCCcEEEEEEccCCce-eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEe
Confidence 33 4677777788999999999876 4444444566778999997665666666677777666431 1111111
Q ss_pred ecCCC--------------------------eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEc
Q 003279 677 KCQSG--------------------------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 730 (834)
Q Consensus 677 ~~~~~--------------------------i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~s 730 (834)
..++. ...++|+|.-+.++.......+.++|++-..++....-..+.+.-+.|-
T Consensus 202 sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vl 281 (1062)
T KOG1912|consen 202 SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVL 281 (1062)
T ss_pred cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEec
Confidence 11000 1235678888888888899999999999888877776666666667777
Q ss_pred CCC--CEEEEEe-CCeEEEEEcCC
Q 003279 731 TSG--EYLASVS-DELVRVWSIGS 751 (834)
Q Consensus 731 pdg--~~Lasgs-Dg~I~IwDl~s 751 (834)
|++ ..|++.. ||.+.+|-.+.
T Consensus 282 P~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 282 PDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred cCCCcceEEEEecCCeEEEEEeec
Confidence 765 4677777 99888886543
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-07 Score=102.41 Aligned_cols=275 Identities=14% Similarity=0.097 Sum_probs=171.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC
Q 003279 549 PASTSKVESCHFSPDGKLLATGGHDK-KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 627 (834)
Q Consensus 549 ~gH~~~V~sl~fSpdg~~Lasgs~Dg-~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~ 627 (834)
-+|.+.|.-..+..+++-++.|..|| .+-|||.++++... +...-+.|.++..+++|++++.+.....|.++|++++.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 47888899999999999999999999 89999998877654 44566789999999999999999999999999999877
Q ss_pred ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC----cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeE
Q 003279 628 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYI 703 (834)
Q Consensus 628 ~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg----~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I 703 (834)
. ...-....+-|+.++|+|+++. +|-+--+| .|+++|+..++..........-.+-+|.|++++|..-+.-.
T Consensus 435 v-~~idkS~~~lItdf~~~~nsr~-iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~Rs-- 510 (668)
T COG4946 435 V-RLIDKSEYGLITDFDWHPNSRW-IAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARS-- 510 (668)
T ss_pred e-eEecccccceeEEEEEcCCcee-EEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccc--
Confidence 4 2333445678999999999774 44443344 79999999988877766666677889999999988776411
Q ss_pred EEEECCCCeEEEE--EeCCCCCEEEEE----EcCCCCEEEEE--eCCeEEEEEcCCCCCcee-----EEEe-ecCCCceE
Q 003279 704 SILDVETQVCRLK--LQGHKNQVHSVC----WNTSGEYLASV--SDELVRVWSIGSGSKGEC-----IHEL-SCTGNKFH 769 (834)
Q Consensus 704 ~iwDl~t~~~~~~--l~~h~~~I~sl~----~spdg~~Lasg--sDg~I~IwDl~s~~~~~~-----i~~~-~~~~~~I~ 769 (834)
.|......+.. +..+..+...+- .+|-....-.. .++.+-+=++......-. ...+ ....+.|.
T Consensus 511 --LdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~dY~sI~~lk~~kil 588 (668)
T COG4946 511 --LDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKIL 588 (668)
T ss_pred --cCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccccccccCccceeEeeecCCCeEE
Confidence 11111111111 111211111110 11111111111 123332222221110000 0001 11111122
Q ss_pred EEEEeCCCCE---EEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 770 SCVFHPTFPS---LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 770 svafspdg~~---L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
-..+.-.|.+ +...-..|.|.+||+++.+... -...++++..|+|++.|.. -.||.++++|
T Consensus 589 lfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e---~k~nvss~rlS~D~s~ilv-k~d~kl~~f~ 652 (668)
T COG4946 589 LFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEE---YKDNVSSFRLSSDGSKILV-KLDGKLRLFD 652 (668)
T ss_pred EEEeeccchhhhhhcCCCccceEEEEecchhhHHH---HhcccceEEEcCCCCEEEE-EeCCeEEEEe
Confidence 2222222211 1112335688899988876543 3457899999999998888 7899999875
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-06 Score=92.55 Aligned_cols=217 Identities=7% Similarity=0.020 Sum_probs=143.6
Q ss_pred EEEEECC-CCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEc-cCCCcEEEEEeCCCcEEEEECCCCceeeE
Q 003279 598 TDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGV 675 (834)
Q Consensus 598 ~~l~fsp-dg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fs-pdg~~llasgs~Dg~I~lwDl~s~~~i~~ 675 (834)
.+++|.+ ++.++++-...+.|+.|+..++.... +.... ...+++. ++ ..++ .+.. +.+.++|+.+++....
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--~~~~~--~~G~~~~~~~-g~l~-v~~~-~~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--IDLPG--PNGMAFDRPD-GRLY-VADS-GGIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--EESSS--EEEEEEECTT-SEEE-EEET-TCEEEEETTTTEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--EecCC--CceEEEEccC-CEEE-EEEc-CceEEEecCCCcEEEE
Confidence 3678888 66667776678999999998765322 22222 7777777 55 4444 4443 4566669998876655
Q ss_pred eec------CCCeeEEEEecCCCEEEEEEcC--------CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-
Q 003279 676 FKC------QSGATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 740 (834)
Q Consensus 676 ~~~------~~~i~~l~~sp~g~~ll~~s~d--------g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs- 740 (834)
... ....+.+++.++|+.+++.... |.|+.++.. ++...... .-...+.|+|+|+++.|+++.
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEET
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeeccc
Confidence 543 2337789999998866655543 568888888 55444443 345678999999999887665
Q ss_pred -CCeEEEEEcCCCCC-c---eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEE
Q 003279 741 -DELVRVWSIGSGSK-G---ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAA 814 (834)
Q Consensus 741 -Dg~I~IwDl~s~~~-~---~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~laf 814 (834)
.+.|..|++..... . ..+..+.........+++..+|+..++....+.|.++|.. ++.+ .+......+++++|
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 77899999874322 1 1222223333357889999999877777778899999988 6655 34433468999999
Q ss_pred e-CCCCEEEEE
Q 003279 815 S-TVNGMVASA 824 (834)
Q Consensus 815 s-pdg~~LaSg 824 (834)
. ++.+.|+..
T Consensus 233 gg~~~~~L~vT 243 (246)
T PF08450_consen 233 GGPDGKTLYVT 243 (246)
T ss_dssp ESTTSSEEEEE
T ss_pred ECCCCCEEEEE
Confidence 5 665555443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.9e-08 Score=112.99 Aligned_cols=239 Identities=15% Similarity=0.195 Sum_probs=176.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCC------------CEEEEEeCCCeEE
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL------------SRLATSSADRTVR 619 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg------------~~Latgs~Dg~I~ 619 (834)
...-.++.|+|.| +||.|+. ..|.|.|..+.+.+..++.|...|+.+.|.|-. -+||++...|.|.
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 3336788999887 8888876 578999999999999999999999999998731 2567777889999
Q ss_pred EEecCCCCceeeeeccCCCCeEEEEEcc---CCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC-eeEEEEec-CCCEE
Q 003279 620 VWDTENPDYSLRTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQP-RLGRI 694 (834)
Q Consensus 620 IWDl~s~~~~i~~~~~h~~~V~sl~fsp---dg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~-i~~l~~sp-~g~~l 694 (834)
+||...... +..+..|..+|..++|-+ +.++++++-....+|.+|+..+|+.+..+..... ..|+.+.| +.+++
T Consensus 93 l~d~~~~s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~ 171 (1062)
T KOG1912|consen 93 LVDFVLASV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHF 171 (1062)
T ss_pred EEEehhhhh-hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceE
Confidence 999987654 667778889999999976 3445666666678999999999999988876444 55688888 55677
Q ss_pred EEEEcCCeEEEEECCC-------CeEEEEEeCCCC------------C-------------EEEEEEcCCCC-EEEEEeC
Q 003279 695 LAAAIENYISILDVET-------QVCRLKLQGHKN------------Q-------------VHSVCWNTSGE-YLASVSD 741 (834)
Q Consensus 695 l~~s~dg~I~iwDl~t-------~~~~~~l~~h~~------------~-------------I~sl~~spdg~-~LasgsD 741 (834)
.+.+..|.+.+.+.-. ++....-..|.+ . ...++|+|.-+ .++..-.
T Consensus 172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p 251 (1062)
T KOG1912|consen 172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP 251 (1062)
T ss_pred EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec
Confidence 7777788777776431 222222222222 0 01246677654 4444458
Q ss_pred CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC--CEEEEEEcCCeEEEEECCC
Q 003279 742 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF--PSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 742 g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg--~~L~sgs~dg~I~Iwdl~~ 796 (834)
..+.|+|++-. .++..+....+.+.-+.+-|++ ..|++.-.||.+.||-.+.
T Consensus 252 rellv~dle~~---~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 252 RELLVFDLEYE---CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred cceEEEcchhh---ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 88999999876 6676666666666666776665 5799999999999997654
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.1e-06 Score=90.81 Aligned_cols=217 Identities=14% Similarity=0.173 Sum_probs=146.2
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEEC-CCCCEEEEEeCCCeEEEEecCCCCcee-eee
Q 003279 557 SCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS-PSLSRLATSSADRTVRVWDTENPDYSL-RTF 633 (834)
Q Consensus 557 sl~fSp-dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fs-pdg~~Latgs~Dg~I~IWDl~s~~~~i-~~~ 633 (834)
+++|.+ ++.++++--..+.|+.|+..++.....- ... ...+++. +++ .|+.+..++ +.++|+.+++... ...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-LPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-SSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-cCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 678998 6777777767899999999887665322 222 6677777 564 555555554 5556988765322 111
Q ss_pred c--c-CCCCeEEEEEccCCCcEEEEEeCC--------CcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc-CC
Q 003279 634 T--G-HSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN 701 (834)
Q Consensus 634 ~--~-h~~~V~sl~fspdg~~llasgs~D--------g~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg 701 (834)
. . .....+++++.++|. +.++.... |.|..++.. ++.......-.....++|+|+++.|+++.. .+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccc
Confidence 1 1 346788999999987 55454432 568888888 666666655567889999999998876654 68
Q ss_pred eEEEEECCC--C-----eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003279 702 YISILDVET--Q-----VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 773 (834)
Q Consensus 702 ~I~iwDl~t--~-----~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svaf 773 (834)
.|..||+.. . +....+....+....++++.+|+++++.. .+.|.++|.. + +.+..+......+++++|
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G---~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G---KLLREIELPVPRPTNCAF 232 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S---CEEEEEE-SSSSEEEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c---cEEEEEcCCCCCEEEEEE
Confidence 899999863 2 11222232233478999999999888776 8899999987 5 566666666568999999
Q ss_pred e-CCCCEEEEEE
Q 003279 774 H-PTFPSLLVIG 784 (834)
Q Consensus 774 s-pdg~~L~sgs 784 (834)
. ++.+.|++.+
T Consensus 233 gg~~~~~L~vTt 244 (246)
T PF08450_consen 233 GGPDGKTLYVTT 244 (246)
T ss_dssp ESTTSSEEEEEE
T ss_pred ECCCCCEEEEEe
Confidence 4 6767777654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.4e-09 Score=129.30 Aligned_cols=209 Identities=16% Similarity=0.239 Sum_probs=163.4
Q ss_pred CEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec--CCCeeE
Q 003279 607 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQ 684 (834)
Q Consensus 607 ~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~--~~~i~~ 684 (834)
..+.....++...-|..+... ..+..+-..|.++.-+|...+++ +|+.||.|++|....+..+..+.. ...++.
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~---~~~k~~v~~v~r~~sHp~~~~Yl-tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr 2256 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGAS---VMIKHPVENVRRMTSHPSDPYYL-TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTR 2256 (2439)
T ss_pred ccCCcccCCccccceecccce---eEeecccCceeeecCCCCCceEE-ecCCCceEEEEeccCCCeEEEeeccCcchhhh
Confidence 334444445555555554332 23334556788888888877555 999999999999999988887775 466888
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCceeEEE
Q 003279 685 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHE 760 (834)
Q Consensus 685 l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~i~~ 760 (834)
+.|+..|+.+.++..||.+.+|.+. .++....+.|....+.+.|-. ..+++.+ ++.+.+||.--.....+++
T Consensus 2257 ~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~- 2332 (2439)
T KOG1064|consen 2257 SRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH- 2332 (2439)
T ss_pred hhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-
Confidence 9999999999999999999999988 667777788999899888875 4555543 5589999987655445666
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 761 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 761 ~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.+|...++++++.|....|++|+.+|.|++||++-.+.+ .+.. ++ ...++++|+..|.|+||+
T Consensus 2333 -~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2333 -TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred -eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEE
Confidence 889999999999999999999999999999999887665 2222 44 567899999999999995
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.9e-08 Score=97.08 Aligned_cols=248 Identities=9% Similarity=0.014 Sum_probs=165.0
Q ss_pred CCcEEEEeCCCCe--EEEEeccCCCCeEEEEECC-----CCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEE
Q 003279 573 DKKAVLWCTESFT--VKSTLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 645 (834)
Q Consensus 573 Dg~I~IWd~~t~~--~~~~l~~h~~~I~~l~fsp-----dg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~f 645 (834)
...|.+|++.+.. .+... ..+.|.| ...+||.|+..|...+|...+..........|...|+-+.-
T Consensus 51 t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred eeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence 3456777765433 22222 2344444 34589999999999999999776655555556554443322
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-eEE-E-EEeCCC
Q 003279 646 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQ-VCR-L-KLQGHK 721 (834)
Q Consensus 646 spdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~-~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~-~~~-~-~l~~h~ 721 (834)
.-+...-+..++.|.++++++++-+......... -...++.++++++++++.+....|..|.+... +.+ . ......
T Consensus 124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~ 203 (344)
T KOG4532|consen 124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS 203 (344)
T ss_pred hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence 2222333456788999999988754433322221 33788999999999999999999999988754 222 2 223344
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce--eEEEeecCCCceEEEEEeCCCC--EEEEEEcCCeEEEEECCC
Q 003279 722 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE--CIHELSCTGNKFHSCVFHPTFP--SLLVIGCYETLELWNMTE 796 (834)
Q Consensus 722 ~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~--~i~~~~~~~~~I~svafspdg~--~L~sgs~dg~I~Iwdl~~ 796 (834)
+.-.+..|+.....+|++. ||++.|||++...... ....-..|.+.+..|.|++.|. .|+..-.-+.+.+.|+++
T Consensus 204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 5557889999999999999 9999999999764211 1222345789999999998774 455655667899999998
Q ss_pred CeEE--------EeccCCC-CeEEEEEeCCCCEEEEEecC
Q 003279 797 NKTL--------TLSAHDK-LVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 797 ~~~~--------~l~~h~~-~V~~lafspdg~~LaSgs~D 827 (834)
++-. ....|.. .|..-.|+.++..+.+.+.+
T Consensus 284 ~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 284 YVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred CceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 7644 1223333 37778888777665555443
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.1e-09 Score=128.61 Aligned_cols=190 Identities=15% Similarity=0.305 Sum_probs=155.0
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC
Q 003279 547 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 625 (834)
Q Consensus 547 ~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s 625 (834)
.++.|-..|.++.-+|...+.+||+.||.|++|....+..+..+. .....|+.+.|+..|..+..+..||.+.+|.+..
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p 2282 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP 2282 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC
Confidence 344555678888889988899999999999999998888776664 2337899999999999999999999999999983
Q ss_pred CCceeeeeccCCCCeEEEEEccCCCcEEEEEe---CCCcEEEEECCCC---ceeeEeecCCCeeEEEEecCCCEEEEEEc
Q 003279 626 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNG---SCAGVFKCQSGATQMRFQPRLGRILAAAI 699 (834)
Q Consensus 626 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs---~Dg~I~lwDl~s~---~~i~~~~~~~~i~~l~~sp~g~~ll~~s~ 699 (834)
.+......|+....++.|-. .++++++ .++.+.+||..-. .++. ..|.++++++++.|....|++|+.
T Consensus 2283 --k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2283 --KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred --cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCC
Confidence 45777888999999999874 3565653 5789999997532 2333 446788999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003279 700 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 752 (834)
Q Consensus 700 dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 752 (834)
+|.|++||++..+.++.+.. ++ ...++++++ .|.|+||++...
T Consensus 2357 ~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred cCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence 99999999998877766553 44 566788888 999999999876
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.1e-09 Score=111.30 Aligned_cols=277 Identities=15% Similarity=0.124 Sum_probs=182.8
Q ss_pred cCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEE
Q 003279 500 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVL 578 (834)
Q Consensus 500 ~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~-Dg~I~I 578 (834)
.....|+.+++.|+.++.|.-..- .-...+..++.|-+.|.+++.+-||.++.+++. |..+++
T Consensus 17 ~tka~fiiqASlDGh~KFWkKs~i----------------sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kv 80 (558)
T KOG0882|consen 17 PTKAKFIIQASLDGHKKFWKKSRI----------------SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKV 80 (558)
T ss_pred eehhheEEeeecchhhhhcCCCCc----------------cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeE
Confidence 345578999999999999933221 122346677899999999999999999999777 999999
Q ss_pred EeCCCCeEEEEec--cCCCCeEEEEECCC-CC-EEEEE-eCCCeEEEEecCCCCcee-eeeccCCCCeEEEEEccCCCcE
Q 003279 579 WCTESFTVKSTLE--EHTQWITDVRFSPS-LS-RLATS-SADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDL 652 (834)
Q Consensus 579 Wd~~t~~~~~~l~--~h~~~I~~l~fspd-g~-~Latg-s~Dg~I~IWDl~s~~~~i-~~~~~h~~~V~sl~fspdg~~l 652 (834)
+|+++...+.-++ .-.+.+.++ .++. -. .|+++ -.++.|.|+|-....+.. ..-.-|..+|.++.+.+.++ .
T Consensus 81 fDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s 158 (558)
T KOG0882|consen 81 FDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-S 158 (558)
T ss_pred EEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc-c
Confidence 9999876653332 222322222 2222 11 33333 357899999987655333 34455899999999999977 4
Q ss_pred EEEEeCCCcEEEEECCC------CceeeEe----------ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003279 653 LCSCDNNSEIRYWSINN------GSCAGVF----------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 716 (834)
Q Consensus 653 lasgs~Dg~I~lwDl~s------~~~i~~~----------~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~ 716 (834)
+++....|.|..|..+. .+....+ +......++.|+|++..+.+.+.|..|++++.++++.+..
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 55888889999999873 2222222 2245578999999999999999999999999999988877
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 717 LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 717 l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~-~~~I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
+..-...- .+-+.. .+.+-++.-+.....-.++..+ ......++|...+++|+.++--| |+++++.
T Consensus 239 iDE~~t~~---~~q~ks---------~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~ 305 (558)
T KOG0882|consen 239 IDEVLTDA---QYQPKS---------PYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLD 305 (558)
T ss_pred hhccchhh---hhcccc---------ccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEee
Confidence 75422111 111111 1111111111111111122222 23346678999999999888765 8899999
Q ss_pred CCeEEEeccCCC
Q 003279 796 ENKTLTLSAHDK 807 (834)
Q Consensus 796 ~~~~~~l~~h~~ 807 (834)
++.+.++.+...
T Consensus 306 tn~v~ri~gk~e 317 (558)
T KOG0882|consen 306 TNTVVRILGKDE 317 (558)
T ss_pred cCeEEEEeccch
Confidence 988876655443
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.2e-07 Score=92.89 Aligned_cols=216 Identities=12% Similarity=0.001 Sum_probs=138.3
Q ss_pred CCcEEEEeCCCCeEEEEeccC--CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCC
Q 003279 573 DKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 650 (834)
Q Consensus 573 Dg~I~IWd~~t~~~~~~l~~h--~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~ 650 (834)
+|.|..||..+++.+....-- .....+. ..+++..+++++.++.|+.||..+++.....-. ...+...... .+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~~~~-~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISGAPVV-DGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGSGEEE-ETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec--cccccceeee-ccc
Confidence 689999999999999777431 1222211 223567788889999999999998875333222 2221111122 223
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEe-ecCC----CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCC--
Q 003279 651 DLLCSCDNNSEIRYWSINNGSCAGVF-KCQS----GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-- 723 (834)
Q Consensus 651 ~llasgs~Dg~I~lwDl~s~~~i~~~-~~~~----~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~-- 723 (834)
.+ +.++.++.|+.+|..+|+.+..+ .... ..........++.++++..++.|..+|+++|+.+.........
T Consensus 78 ~v-~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 78 RV-YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp EE-EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred cc-ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence 34 45557889999999999999884 3221 1223333334788999999999999999999998888764422
Q ss_pred --------EEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 724 --------VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 724 --------I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
+.+-....++ .++.+. ++.+..+|+.++ +.+.... ...+.. .....+..|++++.++.|.+||+
T Consensus 157 ~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg---~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATG---EKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp --EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTT---EEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEET
T ss_pred cceeeecccccceEEECC-EEEEEcCCCeEEEEECCCC---CEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEEC
Confidence 1222233345 555555 775444499998 4333222 222222 24577788888889999999999
Q ss_pred CCCeEE
Q 003279 795 TENKTL 800 (834)
Q Consensus 795 ~~~~~~ 800 (834)
++++.+
T Consensus 230 ~tG~~~ 235 (238)
T PF13360_consen 230 KTGKVV 235 (238)
T ss_dssp TTTEEE
T ss_pred CCCCEE
Confidence 999875
|
... |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.9e-07 Score=109.14 Aligned_cols=275 Identities=11% Similarity=0.143 Sum_probs=175.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCC----cEEEEeCCCC---eEEEEec-----cCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 003279 554 KVESCHFSPDGKLLATGGHDK----KAVLWCTESF---TVKSTLE-----EHTQWITDVRFSPSLSRLATSSADRTVRVW 621 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg----~I~IWd~~t~---~~~~~l~-----~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 621 (834)
.+...+|.+....+.++.... .|.+...... +.+..+. ...+.|.++.|.++...++.+..+|.|.++
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~ 102 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILV 102 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEE
Confidence 466777777655443333222 2333322221 2333332 345679999999999999999999999999
Q ss_pred ----ecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC---------------CCcee--------e
Q 003279 622 ----DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---------------NGSCA--------G 674 (834)
Q Consensus 622 ----Dl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~---------------s~~~i--------~ 674 (834)
+..+.. +.....-...|.+++|+||++ +++..+.++.|.+.+-. ..+.+ .
T Consensus 103 ~~~~~~~~~~--~E~VG~vd~GI~a~~WSPD~E-lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeT 179 (928)
T PF04762_consen 103 REDPDPDEDE--IEIVGSVDSGILAASWSPDEE-LLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKET 179 (928)
T ss_pred EccCCCCCce--eEEEEEEcCcEEEEEECCCcC-EEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccC
Confidence 555433 344444567899999999987 45555557777665321 00000 0
Q ss_pred Ee-------------------------ecCCCeeEEEEecCCCEEEEEEc---C---CeEEEEECCCCeEEEEEeCCCCC
Q 003279 675 VF-------------------------KCQSGATQMRFQPRLGRILAAAI---E---NYISILDVETQVCRLKLQGHKNQ 723 (834)
Q Consensus 675 ~~-------------------------~~~~~i~~l~~sp~g~~ll~~s~---d---g~I~iwDl~t~~~~~~l~~h~~~ 723 (834)
.| .....-..++|-.||.+|++.+. . ..|+||+-+ |....+-+.-.+-
T Consensus 180 QF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gL 258 (928)
T PF04762_consen 180 QFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGL 258 (928)
T ss_pred ccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCc
Confidence 00 01224567889999999998886 2 479999876 5544444433344
Q ss_pred EEEEEEcCCCCEEEEEe--C--CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeE
Q 003279 724 VHSVCWNTSGEYLASVS--D--ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT 799 (834)
Q Consensus 724 I~sl~~spdg~~Lasgs--D--g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~ 799 (834)
-.+++|.|.|.+||+.. . ..|.+|.-+.-...+....+......|..+.|++++..|++...| .|.+|-..+...
T Consensus 259 e~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHW 337 (928)
T PF04762_consen 259 EGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYHW 337 (928)
T ss_pred cCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCEE
Confidence 45789999999999887 2 267777654433333333333456789999999999998887755 499999988764
Q ss_pred E---Eec-cCCCCeEEEEEeCCCC-EEEEEecCCcEEEe
Q 003279 800 L---TLS-AHDKLVSSLAASTVNG-MVASASHDKCVKIW 833 (834)
Q Consensus 800 ~---~l~-~h~~~V~~lafspdg~-~LaSgs~DG~I~IW 833 (834)
. .+. .....+..+.|+|... .|...+.+|.+.++
T Consensus 338 YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~ 376 (928)
T PF04762_consen 338 YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIY 376 (928)
T ss_pred EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEE
Confidence 3 222 2334455699999654 46666665666543
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.4e-07 Score=100.33 Aligned_cols=255 Identities=11% Similarity=0.011 Sum_probs=156.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCC----C
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST----T 639 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~----~ 639 (834)
+..|+.++.++.++.+|.++|+.+............... .+..++.++.++.|..+|..+++........... .
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 456778888999999999999988776543321111222 2446777888999999999988753332221100 0
Q ss_pred eEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC--------eeEEEEec--CCCEEEEEEcCCeEEEEECC
Q 003279 640 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--------ATQMRFQP--RLGRILAAAIENYISILDVE 709 (834)
Q Consensus 640 V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~--------i~~l~~sp--~g~~ll~~s~dg~I~iwDl~ 709 (834)
..+.... +. .++.++.++.+..+|..+++.+..+..... ...+..+| .++.+++++.++.+..+|..
T Consensus 198 ~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 198 ESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred CCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 0111111 22 344567789999999999988776543211 01111122 35678888889999999999
Q ss_pred CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEcCC
Q 003279 710 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCYE 787 (834)
Q Consensus 710 t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-~~~I~svafspdg~~L~sgs~dg 787 (834)
+++.+...... ....+.. ++..|+.++ ++.+..+|..+++ .+-..... .....+..+ .+..|++++.+|
T Consensus 275 tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G 345 (394)
T PRK11138 275 SGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGV---ELWSQSDLLHRLLTAPVL--YNGYLVVGDSEG 345 (394)
T ss_pred CCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCc---EEEcccccCCCcccCCEE--ECCEEEEEeCCC
Confidence 99877655321 1112222 344455555 9999999998873 33222211 111222222 245788999999
Q ss_pred eEEEEECCCCeEE-EeccCCCCeE-EEEEeCCCCEEEEEecCCcEEEeC
Q 003279 788 TLELWNMTENKTL-TLSAHDKLVS-SLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 788 ~I~Iwdl~~~~~~-~l~~h~~~V~-~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.|+++|..+++.+ ........+. ...+. +..|+.++.||.|+.++
T Consensus 346 ~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~--~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 346 YLHWINREDGRFVAQQKVDSSGFLSEPVVA--DDKLLIQARDGTVYAIT 392 (394)
T ss_pred EEEEEECCCCCEEEEEEcCCCcceeCCEEE--CCEEEEEeCCceEEEEe
Confidence 9999999999987 3322222232 22332 45788889999988764
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.8e-09 Score=117.24 Aligned_cols=207 Identities=20% Similarity=0.300 Sum_probs=153.9
Q ss_pred EEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCe-EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 545 FQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~IWd~~t~~-~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
...+.||+..|+.+.|.|.. ..|++++.|..|..||+.+.. .+..+..-......|+|+.....+++.+....|+|||
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd 186 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWD 186 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEe
Confidence 34678999999999999954 479999999999999998754 3444444445567899998666666677888999999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc--eeeEeecCCCeeEEEEecCCCEEEEEEc-
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKCQSGATQMRFQPRLGRILAAAI- 699 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~--~i~~~~~~~~i~~l~~sp~g~~ll~~s~- 699 (834)
++.+..++..+++|...|+.++|.......+.+++.|++|++||..... ..+......++..-++.|-|.-.++--.
T Consensus 187 ~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~ 266 (1081)
T KOG0309|consen 187 LRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMV 266 (1081)
T ss_pred ccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecccc
Confidence 9999989999999999999999987666677799999999999987643 3344445666777777775443322222
Q ss_pred -CCeEEEE---------ECCC-CeEEEEEeCCCCCEEEEEEcCCC----------CEEEEEe-CCeEEEEEcCC
Q 003279 700 -ENYISIL---------DVET-QVCRLKLQGHKNQVHSVCWNTSG----------EYLASVS-DELVRVWSIGS 751 (834)
Q Consensus 700 -dg~I~iw---------Dl~t-~~~~~~l~~h~~~I~sl~~spdg----------~~Lasgs-Dg~I~IwDl~s 751 (834)
++.+.++ +..+ ..+++.|.||.+.|..+-|-..+ -.|++-+ |.++++|-+.+
T Consensus 267 G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 267 GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 2233333 3333 36889999999988777664321 2567777 99999998865
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5e-08 Score=104.52 Aligned_cols=163 Identities=17% Similarity=0.204 Sum_probs=113.5
Q ss_pred cCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003279 500 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 579 (834)
Q Consensus 500 ~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IW 579 (834)
.+..++++++..+....+|+-..... +..+.....+......|+.+..+......-.++....+.+|
T Consensus 71 s~~~~llAv~~~~K~~~~f~~~~~~~-------------~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~ 137 (390)
T KOG3914|consen 71 SDSGRLVAVATSSKQRAVFDYRENPK-------------GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDIL 137 (390)
T ss_pred CCCceEEEEEeCCCceEEEEEecCCC-------------cceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeee
Confidence 44557888888877776665444332 11122223333333344444444333333334455566667
Q ss_pred eCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC
Q 003279 580 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 580 d~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 659 (834)
....+..... -+|-..+++|+|+||+++|+|+..|..|+|-.+......-....||...|..++..++. .|++++.|
T Consensus 138 s~~~~~~~~~-lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD 214 (390)
T KOG3914|consen 138 SADSGRCEPI-LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--LLLSGSGD 214 (390)
T ss_pred cccccCcchh-hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--eeeecCCC
Confidence 6666555544 48999999999999999999999999999998876554345567899999999998763 57799999
Q ss_pred CcEEEEECCCCceeeEeec
Q 003279 660 SEIRYWSINNGSCAGVFKC 678 (834)
Q Consensus 660 g~I~lwDl~s~~~i~~~~~ 678 (834)
++|++||+.+|+++.++..
T Consensus 215 ~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 215 KTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred CcEEEEecccCCcccccch
Confidence 9999999999999877654
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-08 Score=111.22 Aligned_cols=206 Identities=14% Similarity=0.264 Sum_probs=146.8
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC------ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC
Q 003279 587 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 660 (834)
Q Consensus 587 ~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg 660 (834)
+..+.+|...|..++-..+.+.+++++.|++|++|.++... .+..++..|..+|.++.|..+.+ .+++| ||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeec--cC
Confidence 35678999999999888888899999999999999987532 24567889999999999987744 45455 89
Q ss_pred cEEEEECCCCceeeEee---cCCCeeEEEEec--CCCEEEEE-EcCCeEEEEECCCCeEEEEEe-----CCCCCEEEEEE
Q 003279 661 EIRYWSINNGSCAGVFK---CQSGATQMRFQP--RLGRILAA-AIENYISILDVETQVCRLKLQ-----GHKNQVHSVCW 729 (834)
Q Consensus 661 ~I~lwDl~s~~~i~~~~---~~~~i~~l~~sp--~g~~ll~~-s~dg~I~iwDl~t~~~~~~l~-----~h~~~I~sl~~ 729 (834)
.|.+||.--+..+.... .++.+..+...+ +...++++ +.+.+|+++|.+..+-+..++ +....+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999987776655332 123344444434 33344444 457899999999876555543 34456889999
Q ss_pred cCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE-EECCCCeE
Q 003279 730 NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL-WNMTENKT 799 (834)
Q Consensus 730 spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~I-wdl~~~~~ 799 (834)
.+.|++++++- .|+|.+.|.+++ +.+.....-......++ .|....++....|.++.+ |...++..
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G---~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgim 952 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNG---KVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIM 952 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCC---ceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCee
Confidence 99999999887 999999999998 55554443332222222 344556777777888888 87666543
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.8e-09 Score=122.10 Aligned_cols=265 Identities=14% Similarity=0.184 Sum_probs=185.5
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC--eE
Q 003279 541 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TV 618 (834)
Q Consensus 541 ~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg--~I 618 (834)
.|+.+++|+.|+...+|++|+-+.++|++|+..|.|++|++.+|........|...|+-+.-+.||..+++.+.-. -.
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 4567788999999999999999999999999999999999999999999999999999999999999887766543 47
Q ss_pred EEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-----CCCeeEEEEecCCCE
Q 003279 619 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGR 693 (834)
Q Consensus 619 ~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-----~~~i~~l~~sp~g~~ 693 (834)
.+|++.+......+|. .-.++.|+..... -+.|.......+||+.++....++-. ...-.+..|+|+...
T Consensus 1170 aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~-r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD----EDKAVKFSNSLQF-RALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHhccccccCcccccc----ccceeehhhhHHH-HHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 8999986444444443 3456778755332 22344446788999999877665322 223477889998776
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003279 694 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 773 (834)
Q Consensus 694 ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svaf 773 (834)
++-- | .+||++....++.|...... ..-.|+|.|.-++..+ .|||+++. +.++.+..- .-..+.|
T Consensus 1245 Ilnd---G--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS----EIwD~RTF---~lLh~VP~L--dqc~VtF 1309 (1516)
T KOG1832|consen 1245 ILND---G--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS----EIWDMRTF---KLLHSVPSL--DQCAVTF 1309 (1516)
T ss_pred EeeC---c--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec----hhhhhHHH---HHHhcCccc--cceEEEe
Confidence 6533 3 58999998887777654422 2346899998888754 58999987 444443321 2245677
Q ss_pred eCCCCEEEEEEc--C---------------CeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEe
Q 003279 774 HPTFPSLLVIGC--Y---------------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 774 spdg~~L~sgs~--d---------------g~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs 825 (834)
+..|..++..-. | ...+-||....+.+........|..+|-+|...+++.--
T Consensus 1310 NstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1310 NSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred ccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEEe
Confidence 777775544320 0 023344444444444445566777777777777776543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.4e-06 Score=87.90 Aligned_cols=244 Identities=14% Similarity=0.127 Sum_probs=163.4
Q ss_pred eEEEEEcC-CCCEEEEEeCCCc-EEEEeCCCCeEEEEeccCCCCeE--EEEECCCCCEEEEEeC-----CCeEEEEecCC
Q 003279 555 VESCHFSP-DGKLLATGGHDKK-AVLWCTESFTVKSTLEEHTQWIT--DVRFSPSLSRLATSSA-----DRTVRVWDTEN 625 (834)
Q Consensus 555 V~sl~fSp-dg~~Lasgs~Dg~-I~IWd~~t~~~~~~l~~h~~~I~--~l~fspdg~~Latgs~-----Dg~I~IWDl~s 625 (834)
...++.+| ++..++.+-.-|+ ..+||..+++....+....+.-. .-+|++||++|++.-. .|.|-|||...
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34678888 5667777777665 67899999999887755444322 4689999999998754 47999999995
Q ss_pred CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003279 626 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 705 (834)
Q Consensus 626 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~i 705 (834)
.-..+..+..|.-.-..+.+.||++.+++.- |-|.- ..++++ ..|=....+-.+.+
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN---GGI~T-hpd~GR--------------------~kLNl~tM~psL~~ 142 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVAN---GGIET-HPDSGR--------------------AKLNLDTMQPSLVY 142 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEc---CCCcc-CcccCc--------------------eecChhhcCCceEE
Confidence 5556778888887788899999997666442 22210 011111 11223334556677
Q ss_pred EECCCCeEEEE--E--eCCCCCEEEEEEcCCCCEEEEEe-CC-------eEEEEEcCCCCCceeEEE----eecCCCceE
Q 003279 706 LDVETQVCRLK--L--QGHKNQVHSVCWNTSGEYLASVS-DE-------LVRVWSIGSGSKGECIHE----LSCTGNKFH 769 (834)
Q Consensus 706 wDl~t~~~~~~--l--~~h~~~I~sl~~spdg~~Lasgs-Dg-------~I~IwDl~s~~~~~~i~~----~~~~~~~I~ 769 (834)
.|..+++.+.. + ..|...|..+++.++|..++..- .+ .|.+++.... ...+.. ...-...+-
T Consensus 143 ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~g 220 (305)
T PF07433_consen 143 LDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIG 220 (305)
T ss_pred EecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceE
Confidence 77788876665 4 23777899999999999888765 33 3455544331 111111 122347789
Q ss_pred EEEEeCCCCEEEEEEcCC-eEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEec
Q 003279 770 SCVFHPTFPSLLVIGCYE-TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 826 (834)
Q Consensus 770 svafspdg~~L~sgs~dg-~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~ 826 (834)
+|+++.++..+++++--+ .+.+||..+++.+.... -..+..++..+++ +++|.+.
T Consensus 221 SIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~-l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 221 SIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP-LPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred EEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc-cCceeeeeecCCc-eEEeCCC
Confidence 999999999888777655 99999999999885432 2346667766666 5665544
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.2e-06 Score=93.61 Aligned_cols=259 Identities=14% Similarity=0.123 Sum_probs=157.1
Q ss_pred cCCCCEEEEEe---------CCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceee
Q 003279 561 SPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 631 (834)
Q Consensus 561 Spdg~~Lasgs---------~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~ 631 (834)
|||+++++... ..+.+.|||+++++....... ...+....|+|+|+.|+... ++.|++++..++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 68888877742 246799999999766644433 67789999999999999885 67899999876543222
Q ss_pred eeccC----------------CCCeEEEEEccCCCcEEEEEeCCCcE---------------------------------
Q 003279 632 TFTGH----------------STTVMSLDFHPSKEDLLCSCDNNSEI--------------------------------- 662 (834)
Q Consensus 632 ~~~~h----------------~~~V~sl~fspdg~~llasgs~Dg~I--------------------------------- 662 (834)
+..+. -+.-..+.|+||++.+++.--++..|
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 22220 11235688999998877655444333
Q ss_pred --EEEECCCCceeeEe-e-----cCCCeeEEEEecCCCEEEEEEcCC-----eEEEEECCCCeEEEEEeC-CCCCE---E
Q 003279 663 --RYWSINNGSCAGVF-K-----CQSGATQMRFQPRLGRILAAAIEN-----YISILDVETQVCRLKLQG-HKNQV---H 725 (834)
Q Consensus 663 --~lwDl~s~~~i~~~-~-----~~~~i~~l~~sp~g~~ll~~s~dg-----~I~iwDl~t~~~~~~l~~-h~~~I---~ 725 (834)
.|+|+.+++....- . ...-+..+.|.+++..|++.-.+. .+.++|..++.+...+.. ....| .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 33444444332111 1 122367788999888555544432 577788887644333322 33333 2
Q ss_pred EEEEc-CCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEE-EEEeCCCCEEEEEEcC-----CeEEEEEC
Q 003279 726 SVCWN-TSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCY-----ETLELWNM 794 (834)
Q Consensus 726 sl~~s-pdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~s-vafspdg~~L~sgs~d-----g~I~Iwdl 794 (834)
.+.|. +++..++..+ +| .|++++...+ ....+....-.|.. +.+++++..|+..+.. ..|+..++
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~----~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGG----KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSS----EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEccccc----ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 55554 6665554444 77 6777777665 23455555566644 6789998877765553 26888888
Q ss_pred C-CCeEEEeccCCCCeEEEEEeCCCCEEEEEe
Q 003279 795 T-ENKTLTLSAHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 795 ~-~~~~~~l~~h~~~V~~lafspdg~~LaSgs 825 (834)
. .+....+....+.-..+.|||++++++..+
T Consensus 315 ~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 315 DSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 8 777777765555447999999999877543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.1e-06 Score=97.52 Aligned_cols=255 Identities=9% Similarity=0.058 Sum_probs=152.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCC----------CeE-EEEECCCCCEEEEEeCCCeEEEEecCCCCceeee
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ----------WIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~----------~I~-~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~ 632 (834)
+..|++++.++.|.-+|.++|+.+........ .+. .+.. ++..++.++.++.++.+|..+++...+.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 55777788889999999999988866542220 000 1111 3557778889999999999988753332
Q ss_pred eccCCCCeEE-EEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEE--EEec--CCCEEEEEEcCCeEEEEE
Q 003279 633 FTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQM--RFQP--RLGRILAAAIENYISILD 707 (834)
Q Consensus 633 ~~~h~~~V~s-l~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l--~~sp--~g~~ll~~s~dg~I~iwD 707 (834)
... ..+.+ .... + . .++.+..++.|..+|.++|+.+..+....+...+ ..+| .++.+++++.++.+..+|
T Consensus 147 -~~~-~~~~ssP~v~-~-~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 147 -KVA-GEALSRPVVS-D-G-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred -cCC-CceecCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEE
Confidence 222 22222 1222 2 3 4446777899999999999999887653221100 0011 235678888899999999
Q ss_pred CCCCeEEEEEeCCCC-------CEEEEEEcC---CCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003279 708 VETQVCRLKLQGHKN-------QVHSVCWNT---SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 777 (834)
Q Consensus 708 l~t~~~~~~l~~h~~-------~I~sl~~sp---dg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg 777 (834)
..+++.+........ ....+..+| ++.+++++.++.+..+|..+++ .+-.... .....+. ..+
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~--~~~~~~~--~~~ 294 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ---IVWKREY--GSVNDFA--VDG 294 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC---EEEeecC--CCccCcE--EEC
Confidence 999987665431110 011111122 3444444449999999999883 3332221 1111122 245
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEE-eccC-CCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 778 PSLLVIGCYETLELWNMTENKTLT-LSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 778 ~~L~sgs~dg~I~Iwdl~~~~~~~-l~~h-~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
..|++++.++.|+.+|..+++.+- .... .....+..+. +.+|+.++.||.|++.|
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NGYLVVGDSEGYLHWIN 351 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CCEEEEEeCCCEEEEEE
Confidence 678889999999999999998762 2111 1112222222 45677777888777653
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.7e-06 Score=87.92 Aligned_cols=211 Identities=12% Similarity=0.055 Sum_probs=134.2
Q ss_pred CCeEEEEecCCCCceeeeeccC-CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCE
Q 003279 615 DRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 693 (834)
Q Consensus 615 Dg~I~IWDl~s~~~~i~~~~~h-~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ 693 (834)
+|.|..||..+++.....-... .....+..+ ++++. +++++.++.|+.||..+|+.+..+.....+.... ...++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGGR-VYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETTE-EEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCCE-EEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccc
Confidence 6889999998877543332211 122222122 23343 4466789999999999999999888755543332 334577
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEE-eCCC---CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc-
Q 003279 694 ILAAAIENYISILDVETQVCRLKL-QGHK---NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK- 767 (834)
Q Consensus 694 ll~~s~dg~I~iwDl~t~~~~~~l-~~h~---~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~- 767 (834)
+++++.++.|+.+|.++++.+... .... ..........++..++++. ++.|..+|++++ +.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG---KLLWKYPVGEPRG 155 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT---EEEEEEESSTT-S
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC---cEEEEeecCCCCC
Confidence 888888899999999999988884 3221 1112222333367777777 999999999998 555555443322
Q ss_pred ---------eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 768 ---------FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 768 ---------I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+..-.+..++ .+++++.++.+..+|+.+++.+- ......+..+ ...++..|+.++.|+.|.+||
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 1222222344 78888888854444999999763 2223333332 356778888888999999886
|
... |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-06 Score=87.69 Aligned_cols=243 Identities=11% Similarity=0.053 Sum_probs=160.0
Q ss_pred CcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCC-CEEEE
Q 003279 491 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLAT 569 (834)
Q Consensus 491 ~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg-~~Las 569 (834)
+....+..+......++.|+..+...+|....... .......|...|+-+.=.-|. --+..
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~------------------h~~~cd~snn~v~~~~r~cd~~~~~~i 133 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDG------------------HLYQCDVSNNDVTLVKRYCDLKFPLNI 133 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCccc------------------ceeeecccccchhhhhhhcccccceee
Confidence 34445556677778999999989999885443211 112223344433322211121 23566
Q ss_pred EeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee-e-eeccCCCCeEEEEEcc
Q 003279 570 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-R-TFTGHSTTVMSLDFHP 647 (834)
Q Consensus 570 gs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i-~-~~~~h~~~V~sl~fsp 647 (834)
++.|.++++.+++.+.....+....-.+.++++++|++++++.+....|..|.++...+.+ . .....++.-.+..|+.
T Consensus 134 ~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~ 213 (344)
T KOG4532|consen 134 ASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE 213 (344)
T ss_pred ccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc
Confidence 7778888888877654444443222348899999999999999999999999998655433 3 2333455667888887
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceeeEe------ecCCCeeEEEEecCCC--EEEEEEcCCeEEEEECCCCeEEEEEeC
Q 003279 648 SKEDLLCSCDNNSEIRYWSINNGSCAGVF------KCQSGATQMRFQPRLG--RILAAAIENYISILDVETQVCRLKLQG 719 (834)
Q Consensus 648 dg~~llasgs~Dg~I~lwDl~s~~~i~~~------~~~~~i~~l~~sp~g~--~ll~~s~dg~I~iwDl~t~~~~~~l~~ 719 (834)
.. ..+|++..||++.|||++........ .+.+.+..+.|++.|. .|+..-.-+.+.+.|+++++....+..
T Consensus 214 ~~-~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i 292 (344)
T KOG4532|consen 214 ND-LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI 292 (344)
T ss_pred Cc-ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence 74 47889999999999999875432221 1456789999998553 344444458999999999855443322
Q ss_pred -------CCC-CEEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003279 720 -------HKN-QVHSVCWNTSGEYLASVSDELVRVWSIGSG 752 (834)
Q Consensus 720 -------h~~-~I~sl~~spdg~~LasgsDg~I~IwDl~s~ 752 (834)
|.. .|...+|+.++.-+.+.++-.+.-|++.+.
T Consensus 293 ~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~sr 333 (344)
T KOG4532|consen 293 PDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILSR 333 (344)
T ss_pred CccccccccccccccccccCCCcccccccchhhheeecccc
Confidence 222 377788888887777777666777777654
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.4e-07 Score=94.00 Aligned_cols=200 Identities=12% Similarity=0.159 Sum_probs=123.3
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
+..++++..+..+.++. .++......|+-..+ ...+.++..|.++-.+-+.+--+..++++..||.+.+++.+
T Consensus 47 ~~~lf~~e~~~~~ss~g-----~~r~~~~~~~~rt~~--i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~ 119 (319)
T KOG4714|consen 47 EYILFTGETSSQIISLG-----KGRGRCISLWERDDG--IDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTD 119 (319)
T ss_pred hheeecccchhheeeec-----cceEEEechhhcccC--cCceeeeeccCCCCCcccccccCCceEecCCCceEEEEech
Confidence 34556666665555551 222222333333332 23344555666665555666667789999999999999977
Q ss_pred CCeE-EEEeccCCCCeEEEEECCCCCEEEEEeC-----CCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEE
Q 003279 583 SFTV-KSTLEEHTQWITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 656 (834)
Q Consensus 583 t~~~-~~~l~~h~~~I~~l~fspdg~~Latgs~-----Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasg 656 (834)
.... ...+..-...-.+.++...++.|.++.. -+..++|+++..+..+.... ....|.+++-+|.-.+++++|
T Consensus 120 ~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cg 198 (319)
T KOG4714|consen 120 KDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCG 198 (319)
T ss_pred HHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc-ccccchhhhCCcccccEEEEe
Confidence 5211 1222211111222333334555544421 23456777664332222122 234499999999999999999
Q ss_pred eCCCcEEEEECCCCceeeE-ee-cCCCeeEEEEec-CCCEEEEEEcCCeEEEEECCC
Q 003279 657 DNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQP-RLGRILAAAIENYISILDVET 710 (834)
Q Consensus 657 s~Dg~I~lwDl~s~~~i~~-~~-~~~~i~~l~~sp-~g~~ll~~s~dg~I~iwDl~t 710 (834)
+.||.+.+||.+....... ++ +..++..+-|+| ++..|++++.||.+..||..+
T Consensus 199 t~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 199 TDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9999999999998743322 22 467899999999 467899999999999999875
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.6e-06 Score=85.42 Aligned_cols=227 Identities=17% Similarity=0.176 Sum_probs=133.4
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCC--eEEEEec---cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeee
Q 003279 558 CHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 558 l~fSpdg~~Lasgs~Dg~I~IWd~~t~--~~~~~l~---~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~ 632 (834)
++.+.||++||+.- |..|.|=..++. ..+.+.. ...-.=..++|+||+.+||.+...|+|++||+.... +..
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~--lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE--LFV 79 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce--eEE
Confidence 56788999888764 567777654431 2222222 222234689999999999999999999999998533 222
Q ss_pred ec-------cCCCCeEEEEEccCC-----CcEEEEEeCCCcEEEEECCC-----CceeeEeec----CCCeeEEEEecCC
Q 003279 633 FT-------GHSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSINN-----GSCAGVFKC----QSGATQMRFQPRL 691 (834)
Q Consensus 633 ~~-------~h~~~V~sl~fspdg-----~~llasgs~Dg~I~lwDl~s-----~~~i~~~~~----~~~i~~l~~sp~g 691 (834)
+. .-...|..+.|.+.. ...|++-..+|.++-|-+.. ......|.. ..+|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 21 123566777775432 22344556678777776532 223333332 5679999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEc---CCCCEEEEEeCC------eEEEEEcCCCCCceeEEEee
Q 003279 692 GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN---TSGEYLASVSDE------LVRVWSIGSGSKGECIHELS 762 (834)
Q Consensus 692 ~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~s---pdg~~LasgsDg------~I~IwDl~s~~~~~~i~~~~ 762 (834)
+.|++|+....= ++. -......+++-..- |..+.+....|+ +..+|.+-+. .......
T Consensus 160 ~LLlVgG~~~~~------~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~---~~fs~~~ 226 (282)
T PF15492_consen 160 RLLLVGGCEQNQ------DGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF---KFFSRQG 226 (282)
T ss_pred CEEEEeccCCCC------Ccc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce---eeeeccc
Confidence 998888764320 000 00011112211111 111111111111 1223333221 1222223
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 763 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 763 ~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
.....|..+.++|||..|++...+|.|.+|++.+-+..
T Consensus 227 ~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 227 QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 34678999999999999999999999999999876655
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.2e-06 Score=91.87 Aligned_cols=250 Identities=14% Similarity=0.144 Sum_probs=149.7
Q ss_pred EEEEeCCCCeEEEEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEE
Q 003279 576 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 654 (834)
Q Consensus 576 I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~lla 654 (834)
|++.+..+.+....+..|...|.+++|+|..+ ++..++.+.+|+|.|+++.. .+..+..+ ..+++++|.-+..++++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-VVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-eeeheecc-CCceeeeeccCCcceeE
Confidence 66666666666677788999999999999766 78899999999999999854 46666666 78999999999999999
Q ss_pred EEeCCCcEEEEECCCCceee-Eeec---CCCeeEEEE------ecCCCEEEEEEcCCeEEEEEC----CCCeEEEEEeCC
Q 003279 655 SCDNNSEIRYWSINNGSCAG-VFKC---QSGATQMRF------QPRLGRILAAAIENYISILDV----ETQVCRLKLQGH 720 (834)
Q Consensus 655 sgs~Dg~I~lwDl~s~~~i~-~~~~---~~~i~~l~~------sp~g~~ll~~s~dg~I~iwDl----~t~~~~~~l~~h 720 (834)
.|..+|.|.|||++..+-.. .+.. ..+|..++. .+.++.+++...+ +..|++ ....++..+. .
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~ 329 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-P 329 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-C
Confidence 99999999999998654221 1111 123333332 2334444444433 223332 2223333332 3
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CC---eEE---E-EEcCCCCCceeEEE-eecC-CC------ceEEEEEeCCCCEEEEE
Q 003279 721 KNQVHSVCWNTSGEYLASVS--DE---LVR---V-WSIGSGSKGECIHE-LSCT-GN------KFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 721 ~~~I~sl~~spdg~~Lasgs--Dg---~I~---I-wDl~s~~~~~~i~~-~~~~-~~------~I~svafspdg~~L~sg 783 (834)
.+.+.++.+.+-.+.++... +- .++ . .|...+ ..+.. -..+ +. .-..+.-.++.++|+..
T Consensus 330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG---~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~ 406 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDG---FPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVV 406 (463)
T ss_pred CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccC---ceeeeecccccCCcccccccccceeccccccEEEEe
Confidence 44555555555444444332 11 111 1 111111 11111 0011 10 01122223455555544
Q ss_pred Ec-CCeEEEEECCCCeEEEeccCCCCeEEEEEeCC--CCEEEEEecCCcEEEeC
Q 003279 784 GC-YETLELWNMTENKTLTLSAHDKLVSSLAASTV--NGMVASASHDKCVKIWK 834 (834)
Q Consensus 784 s~-dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspd--g~~LaSgs~DG~I~IWd 834 (834)
+. .+.+.+||..+.+++.....+.+|.+++.... +.+|++-. |..++||+
T Consensus 407 gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk 459 (463)
T KOG1645|consen 407 GDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYK 459 (463)
T ss_pred cCCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhee-cceEEEEe
Confidence 43 45899999999999866667788988876543 33666654 45677764
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.8e-07 Score=96.80 Aligned_cols=234 Identities=18% Similarity=0.287 Sum_probs=147.4
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCce----eeeeccCC------------CCeEEEEEccC-CCcEEEE
Q 003279 593 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS----LRTFTGHS------------TTVMSLDFHPS-KEDLLCS 655 (834)
Q Consensus 593 h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~----i~~~~~h~------------~~V~sl~fspd-g~~llas 655 (834)
..+.|+++.|...|.||++|...|.|.+|.-+....+ ...+.+|. ..|..|.|..+ +..-+..
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 4467999999999999999999999999976643311 12233443 35777877644 3444556
Q ss_pred EeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEE--------c-CCeEEEEECCCCeEEEEEeCCCCCEEE
Q 003279 656 CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--------I-ENYISILDVETQVCRLKLQGHKNQVHS 726 (834)
Q Consensus 656 gs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s--------~-dg~I~iwDl~t~~~~~~l~~h~~~I~s 726 (834)
.+.|.+|++|.+.......+.. .....-.-+|-++-+.+.. . |..|..+ .+...-..|...|.+
T Consensus 105 stNdktiKlWKiyeknlk~va~--nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~-----p~rvyaNaH~yhiNS 177 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAE--NNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK-----PCRVYANAHPYHINS 177 (460)
T ss_pred ecCCceeeeeeeecccchhhhc--cccccccccccCCCcCCHHHhhcccccccceEEEec-----cceeccccceeEeee
Confidence 6779999999987542211111 0111111111111111100 0 1111111 111112358888999
Q ss_pred EEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCC-----CceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEE
Q 003279 727 VCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG-----NKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 727 l~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~-----~~I~svafspdg-~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
+.|..|...++++.|=.|.+|++.-....-.+..+..|. ..|++..|+|.. ..+...++.|.|++-|++.....
T Consensus 178 iS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 178 ISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred eeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence 999999999999889999999987654334444455443 457888999965 55667788899999999732211
Q ss_pred ---------E--------eccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 801 ---------T--------LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 801 ---------~--------l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
. +..-...|..+.|+++|++|++-+. -+|+|||
T Consensus 258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD 307 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD 307 (460)
T ss_pred cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence 1 1122356889999999999987654 5799997
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.4e-06 Score=98.47 Aligned_cols=244 Identities=11% Similarity=0.148 Sum_probs=153.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceee
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 631 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~ 631 (834)
++.|.++.|.-+..-|+.+..+|.|.+.|.++.... ....-...|.+++|+||...++..+.+.++.+-+-.-.-...+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 367999999999999999999999999998875443 3334567899999999999999999988887754321000001
Q ss_pred ee---ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-CceeeEeecCCCeeEEEEecCCCEEEEEEc----C-Ce
Q 003279 632 TF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAI----E-NY 702 (834)
Q Consensus 632 ~~---~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s-~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~----d-g~ 702 (834)
.+ ....+....+-|-.... -| -|+ .|.....+... .+.......++.-+.|.|--||.++++... + ..
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeT-qf-rgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKET-QF-RGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred ccccccccccccceecccccce-ee-ecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 11 00112223333332211 11 111 12121111111 111111123455677999999999888443 3 78
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003279 703 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 778 (834)
Q Consensus 703 I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~ 778 (834)
|+|||-+ +..-..-..-.+--.+++|-|.|.++++.. |+.|.+|.-+.-........+.....++..++|+.++.
T Consensus 224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCC
Confidence 9999987 432222222233446899999999998854 56799998665444444444555555699999999999
Q ss_pred EEEEE---EcCCeEEEEECCCCeEE
Q 003279 779 SLLVI---GCYETLELWNMTENKTL 800 (834)
Q Consensus 779 ~L~sg---s~dg~I~Iwdl~~~~~~ 800 (834)
.|++. .....|++|-+.+....
T Consensus 303 iLAv~~~~~e~~~v~lwt~~NyhWY 327 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGNYHWY 327 (1265)
T ss_pred ceeeeecccccceEEEEEecCeEEE
Confidence 88883 33446999998876543
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.9e-06 Score=93.66 Aligned_cols=179 Identities=11% Similarity=0.039 Sum_probs=121.1
Q ss_pred EccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc-------------------------
Q 003279 645 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI------------------------- 699 (834)
Q Consensus 645 fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~------------------------- 699 (834)
+.|||..+..+.-..+.+.++|.++.+....+........+.++++++++++++.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 4456655544555567888889998888888887777788888999888887761
Q ss_pred ---------------CCeEEEEECCC----C-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC---
Q 003279 700 ---------------ENYISILDVET----Q-VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK--- 754 (834)
Q Consensus 700 ---------------dg~I~iwDl~t----~-~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~--- 754 (834)
++.|.++|.++ + ..+..+. -......+.++|||+++++++ +.+|.|+|+.+...
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~ 358 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD 358 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh
Confidence 24477777776 2 3333333 445678899999999999888 88999999987532
Q ss_pred ------ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC----------CeEE-EeccCCCCe-----EEE
Q 003279 755 ------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE----------NKTL-TLSAHDKLV-----SSL 812 (834)
Q Consensus 755 ------~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~----------~~~~-~l~~h~~~V-----~~l 812 (834)
...+.+... .......+|.++|....+.--|..|..||+.+ ..++ ++.-|-.+. ..=
T Consensus 359 ~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~ 437 (635)
T PRK02888 359 GKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGE 437 (635)
T ss_pred ccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCC
Confidence 112333333 33445678999998777777888999999876 2333 233332221 122
Q ss_pred EEeCCCCEEEEEe
Q 003279 813 AASTVNGMVASAS 825 (834)
Q Consensus 813 afspdg~~LaSgs 825 (834)
.-.|||++|++..
T Consensus 438 t~~~dgk~l~~~n 450 (635)
T PRK02888 438 TKEADGKWLVSLN 450 (635)
T ss_pred cCCCCCCEEEEcc
Confidence 2367888888764
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2e-06 Score=92.23 Aligned_cols=245 Identities=14% Similarity=0.133 Sum_probs=154.0
Q ss_pred EEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCeEEEE
Q 003279 544 EFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVW 621 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IW 621 (834)
....+.+|...|..++|||..+ +|..++.+.+|.|.|+++...+..+..+ ..+++++|.-|. .+|+.|...|.|.||
T Consensus 185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 3457788999999999999776 7888999999999999999998888877 789999998864 567777789999999
Q ss_pred ecCCCCceeeeecc--CCCCeEEEEEccCC-----CcEEEEEeCCCcEEEEECCC----CceeeEeecCCCeeEEEEecC
Q 003279 622 DTENPDYSLRTFTG--HSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSINN----GSCAGVFKCQSGATQMRFQPR 690 (834)
Q Consensus 622 Dl~s~~~~i~~~~~--h~~~V~sl~fspdg-----~~llasgs~Dg~I~lwDl~s----~~~i~~~~~~~~i~~l~~sp~ 690 (834)
|++..+..+..+.+ ...+|..|+.-+-+ ..+++.... .+..|++.- ..++..+...+.+.++.+++.
T Consensus 264 D~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~ 341 (463)
T KOG1645|consen 264 DMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQYHGV 341 (463)
T ss_pred EccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeeecCc
Confidence 99976654444433 23455555433211 224433332 245565532 223333344555667777776
Q ss_pred CCEEEEEEcCC-------eEE-EEECCCCeEEEEEe-CC-CCC---E---EEEEEcCCCCEEEEEe--CCeEEEEEcCCC
Q 003279 691 LGRILAAAIEN-------YIS-ILDVETQVCRLKLQ-GH-KNQ---V---HSVCWNTSGEYLASVS--DELVRVWSIGSG 752 (834)
Q Consensus 691 g~~ll~~s~dg-------~I~-iwDl~t~~~~~~l~-~h-~~~---I---~sl~~spdg~~Lasgs--Dg~I~IwDl~s~ 752 (834)
.+++++....+ .|- -.|..+|..+...+ ++ ... + ..+.-.++..+|+..+ .+.+.+||..+.
T Consensus 342 snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ 421 (463)
T KOG1645|consen 342 SNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF 421 (463)
T ss_pred cceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchh
Confidence 67777776542 111 12333444333222 12 111 0 1122235566666655 458999999988
Q ss_pred CCceeEEEeecCCCceEEEEEe-CCCCEEEEEEcCCeEEEEECC
Q 003279 753 SKGECIHELSCTGNKFHSCVFH-PTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 753 ~~~~~i~~~~~~~~~I~svafs-pdg~~L~sgs~dg~I~Iwdl~ 795 (834)
+.+.++... .+|.+++.. -++..++..-.|..++||..+
T Consensus 422 ---evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 422 ---EVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred ---heeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence 566666543 667766643 345545555556678887654
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.9e-07 Score=89.67 Aligned_cols=195 Identities=13% Similarity=0.126 Sum_probs=113.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE------------EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVK------------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~------------~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
|+.+.|+.+ ..|+++..++.+..+....+.++ ..+..|.++-.+-+.+-.++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 555556543 35666666666655544433332 22223333333333333467799999999999999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEe-----CCCcEEEEECCCCceee-EeecCCCeeEEEEecCCCEE-E
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRI-L 695 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs-----~Dg~I~lwDl~s~~~i~-~~~~~~~i~~l~~sp~g~~l-l 695 (834)
.+........+..-...-.+.++...++ ++.++. .-+..+.|+++..+.+. .......+.+++-+|.-..+ +
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~ 196 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVC 196 (319)
T ss_pred chHHHhhhhhcccccccccccceeeccc-EEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEE
Confidence 8752211111111111112222222333 222221 11244556655433222 12223458899999966555 4
Q ss_pred EEEcCCeEEEEECCCCe-EEEEEeCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCC
Q 003279 696 AAAIENYISILDVETQV-CRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGS 751 (834)
Q Consensus 696 ~~s~dg~I~iwDl~t~~-~~~~l~~h~~~I~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s 751 (834)
+|+.||.+.+||.+... ++..+..|+.+|..+.|+| ++..|++++ ||.+.-||..+
T Consensus 197 cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 197 CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 55667999999999873 3445677999999999998 567888888 99999999765
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2e-06 Score=92.39 Aligned_cols=156 Identities=19% Similarity=0.222 Sum_probs=109.1
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEecCCCCc--eeeeeccCCCCeEEEEEccCCCcEEE--EEeCCCcEEEEECCCCce
Q 003279 597 ITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLC--SCDNNSEIRYWSINNGSC 672 (834)
Q Consensus 597 I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~--~i~~~~~h~~~V~sl~fspdg~~lla--sgs~Dg~I~lwDl~s~~~ 672 (834)
+..+.+++++++||++..++...++++..... .......-...-+.+.|..+....++ ..++...+.+|....+.+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 44556677888888888888877777765332 11111112223344444444343332 233445566666666888
Q ss_pred eeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE-eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcC
Q 003279 673 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG 750 (834)
Q Consensus 673 i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l-~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~ 750 (834)
...+.|-+.+..++|+||+.+|+++..|..|+|-.......+..+ -||+..|..++.-++-. |++++ |++|++||+.
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDIT 223 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEecc
Confidence 888888888999999999999999999999999887766555554 36999999999986655 55555 9999999999
Q ss_pred CCC
Q 003279 751 SGS 753 (834)
Q Consensus 751 s~~ 753 (834)
+++
T Consensus 224 sgk 226 (390)
T KOG3914|consen 224 SGK 226 (390)
T ss_pred cCC
Confidence 994
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.5e-08 Score=112.47 Aligned_cols=200 Identities=17% Similarity=0.268 Sum_probs=150.3
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC-cE
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-EI 662 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg-~I 662 (834)
.+...++..|+...+|++|+-+.++|+.|+..|.|++|++.++.. ...+.+|...|+-+.-+.+|..+|.+++... ..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc-cccccccccccccccccCCcceeeeeccccCchH
Confidence 455677888999999999999999999999999999999998765 6778899999999999999988886666555 67
Q ss_pred EEEECCC-CceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE-eC---CCCCEEEEEEcCCCCEEE
Q 003279 663 RYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-QG---HKNQVHSVCWNTSGEYLA 737 (834)
Q Consensus 663 ~lwDl~s-~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l-~~---h~~~I~sl~~spdg~~La 737 (834)
.+|++.+ +.....| .+..++.|+.....-+.|+......+||+.++.+..++ .+ ....-++..|+|+..+++
T Consensus 1170 aLW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HHhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 7899865 3333333 45667888877566677777788999999998766552 22 222336789999998776
Q ss_pred EEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 738 SVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 738 sgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
- || .+||++.. ..++.|..-. ....-.|+|.|..+++-+ .|||+++-+.+
T Consensus 1247 n--dG--vLWDvR~~---~aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1247 N--DG--VLWDVRIP---EAIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred e--Cc--eeeeeccH---HHHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHH
Confidence 3 45 58999887 4455544322 222347999999887754 58999887655
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.8e-07 Score=95.93 Aligned_cols=207 Identities=15% Similarity=0.154 Sum_probs=149.1
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC--CCceeeeeccCCCCeEEEEEccCCCcEEEEEeC-CCcEEEEECC
Q 003279 592 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSIN 668 (834)
Q Consensus 592 ~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s--~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~-Dg~I~lwDl~ 668 (834)
-|.+.|+.+... -.+++++++.||.++.|.-.. +...+..+..|...|.+++.+-++- ++++.+. |..++++|++
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~-L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW-LFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce-eEeeccCcccceeEEEee
Confidence 477777776554 457999999999999997653 2233456667888999999988854 7778666 9999999999
Q ss_pred CCceeeEeecCCCeeEEEEecCCC----EEEEEE-cCCeEEEEECCCCe--EEEEEeCCCCCEEEEEEcCCCCEEEEEe-
Q 003279 669 NGSCAGVFKCQSGATQMRFQPRLG----RILAAA-IENYISILDVETQV--CRLKLQGHKNQVHSVCWNTSGEYLASVS- 740 (834)
Q Consensus 669 s~~~i~~~~~~~~i~~l~~sp~g~----~ll~~s-~dg~I~iwDl~t~~--~~~~l~~h~~~I~sl~~spdg~~Lasgs- 740 (834)
+-..+..++...-...++|....+ .+++.. .++.|.++|-.... ....-.-|..+|.++.+++-+..+++..
T Consensus 85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 877665555433333333332222 333333 36899999987653 2333344999999999999999998888
Q ss_pred CCeEEEEEcCC-CCC-----------ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 741 DELVRVWSIGS-GSK-----------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 741 Dg~I~IwDl~s-~~~-----------~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
.|.|..|.... ... ...+..+........++.|+|++..+.+.+.|..|++++.++++++
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 88999998873 100 0112233344567789999999999999999999999999998754
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00024 Score=81.16 Aligned_cols=243 Identities=14% Similarity=0.096 Sum_probs=141.0
Q ss_pred eEEEEEcCCCCEEEEE-eCCC----cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC-----------eE
Q 003279 555 VESCHFSPDGKLLATG-GHDK----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----------TV 618 (834)
Q Consensus 555 V~sl~fSpdg~~Lasg-s~Dg----~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg-----------~I 618 (834)
+..+++||||++||.+ +..| .|+|+|+++++.+...-... ....+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4467899999998876 3333 59999999998775321111 122499999988877665433 38
Q ss_pred EEEecCCCCce-eeeeccCCCC--eEEEEEccCCCcEEEEEeCCC---cEEEEECCCC-----ceeeEeecCCCeeEEEE
Q 003279 619 RVWDTENPDYS-LRTFTGHSTT--VMSLDFHPSKEDLLCSCDNNS---EIRYWSINNG-----SCAGVFKCQSGATQMRF 687 (834)
Q Consensus 619 ~IWDl~s~~~~-i~~~~~h~~~--V~sl~fspdg~~llasgs~Dg---~I~lwDl~s~-----~~i~~~~~~~~i~~l~~ 687 (834)
++|++.++... ...+...... ...+..+++++.+++...... .|++.|+..+ ...........+....-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888876543 2333333332 568889999998887665443 5888898875 33333333344444333
Q ss_pred ecCCCEEEEEEc----CCeEEEEECCCCe---EEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCce
Q 003279 688 QPRLGRILAAAI----ENYISILDVETQV---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGE 756 (834)
Q Consensus 688 sp~g~~ll~~s~----dg~I~iwDl~t~~---~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~ 756 (834)
+. +..+++.+. .+.|...++.... ....+..+...+.-..+...+.+|+... ++ .|++|++..+ .
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~---~ 360 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG---K 360 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T---E
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC---c
Confidence 33 444444433 3578888888764 2334555655433333334455555554 55 7999999822 2
Q ss_pred eEEEee-cCCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCeEEEe
Q 003279 757 CIHELS-CTGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTL 802 (834)
Q Consensus 757 ~i~~~~-~~~~~I~svafspdg~~L~sgs~d----g~I~Iwdl~~~~~~~l 802 (834)
....+. ...+.|..+...++++.+...-.. .+|+.||+.+++...+
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 333332 234446666666666654433222 2899999999887643
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.1e-06 Score=97.77 Aligned_cols=183 Identities=13% Similarity=0.206 Sum_probs=132.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCcee
Q 003279 594 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 673 (834)
Q Consensus 594 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i 673 (834)
.+.++|++++ +++|+.|+.+|.|++++....- .+...|... ..+|. ++++|+.||.|.|..+-+.+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~---~~~~~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP---KTNFDHSSS------ILEGE-YVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc---ccccccccc------ccCCc-eEEEecCCCcEEEeeccCCccc
Confidence 3457777775 5799999999999999987431 333445443 34455 7779999999999999999999
Q ss_pred eEeecCCCeeEEEEecC-----CCEEEEEEcCCeEEEEECCC--CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEE
Q 003279 674 GVFKCQSGATQMRFQPR-----LGRILAAAIENYISILDVET--QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRV 746 (834)
Q Consensus 674 ~~~~~~~~i~~l~~sp~-----g~~ll~~s~dg~I~iwDl~t--~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~I 746 (834)
..+....++.+++++|+ .+.+++|+..| +.++.-+= .+....+....++|.+++|. |.++|-++|-.|+|
T Consensus 107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~v 183 (846)
T KOG2066|consen 107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKV 183 (846)
T ss_pred eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEE
Confidence 99999999999999997 57789999888 77765431 12222455577899999996 88999999878999
Q ss_pred EEcCCCCCceeEEEeecCCC------ceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 747 WSIGSGSKGECIHELSCTGN------KFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 747 wDl~s~~~~~~i~~~~~~~~------~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
||+.+. ..+..+..... ....+.|.++.+ | +.|...+|+|..++.
T Consensus 184 yd~~~~---~~l~~i~~p~~~~R~e~fpphl~W~~~~~-L-VIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 184 YDTPTR---QRLTNIPPPSQSVRPELFPPHLHWQDEDR-L-VIGWGDSVKICSIKK 234 (846)
T ss_pred Eecccc---ceeeccCCCCCCCCcccCCCceEecCCCe-E-EEecCCeEEEEEEec
Confidence 999887 33333332222 224567777654 3 444555788888773
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-05 Score=91.62 Aligned_cols=222 Identities=11% Similarity=0.124 Sum_probs=126.5
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 003279 592 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 671 (834)
Q Consensus 592 ~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~ 671 (834)
...-....+.++|++++++++ .||...||...... ... .+.-..++|...+. +|+-.....|.++.--+.+
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r--~k~----~G~g~~~vw~~~n~--yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWR--NKA----FGSGLSFVWSSRNR--YAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTE--EEE----EEE-SEEEE-TSSE--EEEE-TTS-EEEEETTEE-
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCc--ccc----cCceeEEEEecCcc--EEEEECCCeEEEEEcCccc
Confidence 344557899999999999885 56777777743221 111 24456788888543 5566668889997433333
Q ss_pred eeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003279 672 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGS 751 (834)
Q Consensus 672 ~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s 751 (834)
....+..+..+..+.. |..| ....++.|.+||+.+++.+..+... +|..+.|+++|.+++..++..+.|++...
T Consensus 101 ~~k~i~~~~~~~~If~---G~LL-~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~ 174 (443)
T PF04053_consen 101 VVKSIKLPFSVEKIFG---GNLL-GVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNL 174 (443)
T ss_dssp TT-----SS-EEEEE----SSSE-EEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-H
T ss_pred cceEEcCCcccceEEc---CcEE-EEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecc
Confidence 3344554444444443 4544 4445569999999999999998743 48999999999999999988888887653
Q ss_pred C------C--CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEE
Q 003279 752 G------S--KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 823 (834)
Q Consensus 752 ~------~--~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaS 823 (834)
. + ....+..+..-...|.+.+|..+ .++..+.. .|+. +-.|+...+..-+.++.=+.+.+..+.|+.
T Consensus 175 ~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~ 249 (443)
T PF04053_consen 175 EAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYL 249 (443)
T ss_dssp HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEE
T ss_pred hhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEE
Confidence 2 0 00123333333678889999988 45555554 7776 566776666666778888888887788998
Q ss_pred EecCCcEEEe
Q 003279 824 ASHDKCVKIW 833 (834)
Q Consensus 824 gs~DG~I~IW 833 (834)
...|+.|..+
T Consensus 250 ~Dr~~~v~~~ 259 (443)
T PF04053_consen 250 IDRDGNVISY 259 (443)
T ss_dssp E-TT--EEEE
T ss_pred EECCCCEEEE
Confidence 8899888754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.2e-06 Score=97.51 Aligned_cols=175 Identities=14% Similarity=0.188 Sum_probs=131.1
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeecCC-CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEc
Q 003279 652 LLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 730 (834)
Q Consensus 652 llasgs~Dg~I~lwDl~s~~~i~~~~~~~-~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~s 730 (834)
.++.|+.-..+..+|+++.+..+...... ++.-++ .+++.+++|...|+|.+-|.++.+.+.++..|.+.|..+..
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv- 225 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV- 225 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec-
Confidence 45567777789999999988887777644 444444 45678999999999999999999999999999999987655
Q ss_pred CCCCEEEEEe----------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEEC---CC
Q 003279 731 TSGEYLASVS----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNM---TE 796 (834)
Q Consensus 731 pdg~~Lasgs----------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg-~~L~sgs~dg~I~Iwdl---~~ 796 (834)
.|+.|++|+ |..|+|||++.-....++ ..+.++ .-+.|+|.- ..+++++..|...+.|. .+
T Consensus 226 -~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI---~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 226 -QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI---QFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred -cCCeEEEeecccccccccccchhhhhhhhhhhccCCc---ccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 578888775 336899999987432332 222222 446788865 45788899999999983 33
Q ss_pred Ce--EEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 797 NK--TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 797 ~~--~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.. ...+......+..+++++++..+|.|..+|.|.+|-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 21 123334455699999999999999999999999993
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00043 Score=76.24 Aligned_cols=269 Identities=14% Similarity=0.090 Sum_probs=141.4
Q ss_pred EEEcCCCCEEEEEeC-CC--cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeec
Q 003279 558 CHFSPDGKLLATGGH-DK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 634 (834)
Q Consensus 558 l~fSpdg~~Lasgs~-Dg--~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~ 634 (834)
=+|.+||+.|+.++. || .+++.|+++++...-..+.........++++.+.++....+..|+..|+.+.+. ...+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-~~vy~ 119 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-RVVYE 119 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-EEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-EEEEE
Confidence 367889977666554 54 566778899877755443323344567778888887776777899999998664 34444
Q ss_pred cCCCCeEEEEEc--cCCCcEEEEEe----------------------CCCcEEEEECCCCceeeEeecCCCeeEEEEecC
Q 003279 635 GHSTTVMSLDFH--PSKEDLLCSCD----------------------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR 690 (834)
Q Consensus 635 ~h~~~V~sl~fs--pdg~~llasgs----------------------~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~ 690 (834)
.....+-...|. .++. .++..- ..+.|...|+.+|+....+....-+..+.|+|.
T Consensus 120 ~p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT 198 (386)
T ss_dssp --TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred CCcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence 455555455554 2333 332221 124677788999988888887788899999998
Q ss_pred CCEEEEEEcCC-----eEEEEECCC-CeEEEEEeCC--CCCEEEEEEcCCCCEEEEEe---C---CeEEEEEcCCCCCce
Q 003279 691 LGRILAAAIEN-----YISILDVET-QVCRLKLQGH--KNQVHSVCWNTSGEYLASVS---D---ELVRVWSIGSGSKGE 756 (834)
Q Consensus 691 g~~ll~~s~dg-----~I~iwDl~t-~~~~~~l~~h--~~~I~sl~~spdg~~Lasgs---D---g~I~IwDl~s~~~~~ 756 (834)
...+++-|.+| .-+||-+++ +.....+..+ ...+..=-|.+||..|.--+ . ..|.-+|+.++.. +
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-~ 277 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-R 277 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-E
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-e
Confidence 77777766544 124554432 2333333333 23455667899998776533 2 2677778887643 1
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCC----------------eEEEEECCCCeEEEeccCCC---------C--e
Q 003279 757 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYE----------------TLELWNMTENKTLTLSAHDK---------L--V 809 (834)
Q Consensus 757 ~i~~~~~~~~~I~svafspdg~~L~sgs~dg----------------~I~Iwdl~~~~~~~l~~h~~---------~--V 809 (834)
.+... .....+..++||.+++-=++|. -|+++++..+....+..|.. . =
T Consensus 278 ~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~h 353 (386)
T PF14583_consen 278 RLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTH 353 (386)
T ss_dssp EEEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT-
T ss_pred EEEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCC
Confidence 22211 2344566678888655433332 46778888877654444431 1 2
Q ss_pred EEEEEeCCCCEEE-EEecCCcEEEe
Q 003279 810 SSLAASTVNGMVA-SASHDKCVKIW 833 (834)
Q Consensus 810 ~~lafspdg~~La-Sgs~DG~I~IW 833 (834)
..+.|+||+++|+ ++...|...||
T Consensus 354 Php~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 354 PHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp ---EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CCCccCCCCCEEEEECCCCCCccEE
Confidence 4679999999665 55567776665
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00021 Score=80.77 Aligned_cols=251 Identities=12% Similarity=0.133 Sum_probs=175.1
Q ss_pred EEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEE
Q 003279 576 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 654 (834)
Q Consensus 576 I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~lla 654 (834)
+.+++..+......+..+. ....+.+.+++..+.... ....+.+.+... .............-..+++++.+..+++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeeccccc-ceeeeeccCCCccccceeeCCCCCeEEE
Confidence 6666666666555554333 556788888885544443 333455555442 2111111111144567888999888888
Q ss_pred EEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc---CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcC
Q 003279 655 SCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI---ENYISILDVETQVCRLKLQGHKNQVHSVCWNT 731 (834)
Q Consensus 655 sgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~---dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~sp 731 (834)
....+..|.+.|..+.+.............++++++++.++++.. ++.+.+.|..+.+.......-..+ ..++++|
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p 169 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP 169 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence 888889999999998888888887778899999999999888877 589999999999888775544344 8999999
Q ss_pred CCCEEEEEe--CCeEEEEEcCCCCCceeEE-E---eecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEe
Q 003279 732 SGEYLASVS--DELVRVWSIGSGSKGECIH-E---LSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTL 802 (834)
Q Consensus 732 dg~~Lasgs--Dg~I~IwDl~s~~~~~~i~-~---~~~~~~~I~svafspdg~~L~sgs~d---g~I~Iwdl~~~~~~~l 802 (834)
+|..++.+. ++.|.++|..... ... . ..........+.+++++.++++.... +.+...|..++.....
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~---v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNS---VVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcc---eeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 999777776 8899999976652 221 1 11223445678999999987777665 4899999999888754
Q ss_pred c-cCCC-CeEEEEEeCCCCEEEEEecC-CcEEE
Q 003279 803 S-AHDK-LVSSLAASTVNGMVASASHD-KCVKI 832 (834)
Q Consensus 803 ~-~h~~-~V~~lafspdg~~LaSgs~D-G~I~I 832 (834)
. .-.. ....+.++|+|..+.+.... +.|.+
T Consensus 247 ~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 247 DLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred ccccccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 2 2222 56778999999988777433 44443
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3e-06 Score=98.71 Aligned_cols=180 Identities=17% Similarity=0.273 Sum_probs=142.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEE
Q 003279 563 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 642 (834)
Q Consensus 563 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~s 642 (834)
++..++.|+.-..+..+|+.+.+..+........|+-++. +++++++|...|+|.+-|..+.+ .+.++..|.+.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~-~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFE-TIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCc-eeeeeeccccceee
Confidence 3456788888888999999998888777655555666665 67899999999999999999866 48999999999999
Q ss_pred EEEccCCCcEEEEEeC---------CCcEEEEECCCCceeeEeecCCCeeEEEEecC-CCEEEEEEcCCeEEEEE---CC
Q 003279 643 LDFHPSKEDLLCSCDN---------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPR-LGRILAAAIENYISILD---VE 709 (834)
Q Consensus 643 l~fspdg~~llasgs~---------Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~-g~~ll~~s~dg~I~iwD---l~ 709 (834)
++.. .++|++|+. |..|+|||++..+.+.-+..+....-+.|+|. ...+++++..|...+.| +.
T Consensus 223 fDv~---GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 223 FDVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred eecc---CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccC
Confidence 8887 336777764 55789999999888877777667777888885 35677888889999999 43
Q ss_pred CC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEE
Q 003279 710 TQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 748 (834)
Q Consensus 710 t~-~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwD 748 (834)
+. ..+..+......+..+++++++..++.+. +|.|.+|.
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 33 22333333445599999999999999999 99999997
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00011 Score=76.47 Aligned_cols=187 Identities=14% Similarity=0.149 Sum_probs=110.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-------cCCCCeEEEEECCC------CCEEEEEeCCCeEEEE
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-------EHTQWITDVRFSPS------LSRLATSSADRTVRVW 621 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-------~h~~~I~~l~fspd------g~~Latgs~Dg~I~IW 621 (834)
=.-++||||+.+||.+...|+|++||+.... +..+. .-...|..+.|.+. ...|++-..+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 4569999999999999999999999987533 33332 12356777777653 2246677788888888
Q ss_pred ecCCC---Cc-eeee--e-ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEE
Q 003279 622 DTENP---DY-SLRT--F-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 694 (834)
Q Consensus 622 Dl~s~---~~-~i~~--~-~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~l 694 (834)
-+..+ +. .... + ..+...|.++.|+|....+++.|.....-..+. ....++++-.+..+..+.
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~----------a~~~GLtaWRiL~~~Pyy 194 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK----------ASSCGLTAWRILSDSPYY 194 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc----------ccccCceEEEEcCCCCcE
Confidence 76431 11 1122 2 224678999999998765554444332100000 011223333222222221
Q ss_pred E--EEEcCCe------EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003279 695 L--AAAIENY------ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 752 (834)
Q Consensus 695 l--~~s~dg~------I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 752 (834)
. +...|+. ..+|.+-+.+...........|..+..||||.+|++.. +|.|.+|++.+-
T Consensus 195 k~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 195 KQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred EEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 1 1111111 12233222222222223567899999999999999999 999999999875
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.7e-07 Score=94.58 Aligned_cols=170 Identities=12% Similarity=0.170 Sum_probs=125.3
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-----eEEEEEe
Q 003279 644 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-----VCRLKLQ 718 (834)
Q Consensus 644 ~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~-----~~~~~l~ 718 (834)
+|+-+-.-+-++.+.+-.|-+.|++++... .|...+.|.++.|.-.++.++.|+..|.|..+|++.+ .+...+.
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~q-sf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly 296 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQ-SFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY 296 (425)
T ss_pred hhhhccceeeecccccceeEEEEeeccccc-ccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE
Confidence 555332222245566778999999987543 3345678899999998899999999999999999864 4555555
Q ss_pred CCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE--EEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 719 GHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH--SCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 719 ~h~~~I~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~--svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
|...|+++..-. ++.+|.+.+ +|+|++||++.-+..+.+..+.+|.+.-. -+..++....|++++.|-..+||.+
T Consensus 297 -h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl 375 (425)
T KOG2695|consen 297 -HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSL 375 (425)
T ss_pred -cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEec
Confidence 899999997766 677777777 99999999998744445888888765433 3445677788999999999999999
Q ss_pred CCCeEEEeccC-----CCCeEEEEEe
Q 003279 795 TENKTLTLSAH-----DKLVSSLAAS 815 (834)
Q Consensus 795 ~~~~~~~l~~h-----~~~V~~lafs 815 (834)
+.+..+..... +..+.+++|.
T Consensus 376 ~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 376 DSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred ccCceeeccCCCCccccccccceehh
Confidence 99988843322 3345556654
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.8e-05 Score=87.06 Aligned_cols=259 Identities=10% Similarity=0.059 Sum_probs=150.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCC------Ce-E-EEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeecc
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------WI-T-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 635 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~------~I-~-~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~ 635 (834)
+..+++++.++.|+-+|..+++.+-.+..... .+ . .+.+. ++..++.++.++.|+.+|.++++...+.-..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 34667777889999999999988876643322 01 0 11111 2267888889999999999988754332221
Q ss_pred CCC----Ce-EEEEEccCCCcEEEEEe---------CCCcEEEEECCCCceeeEeecCCC--------------------
Q 003279 636 HST----TV-MSLDFHPSKEDLLCSCD---------NNSEIRYWSINNGSCAGVFKCQSG-------------------- 681 (834)
Q Consensus 636 h~~----~V-~sl~fspdg~~llasgs---------~Dg~I~lwDl~s~~~i~~~~~~~~-------------------- 681 (834)
... .+ .+..+.. . +++.++ .++.|..+|..+|+.+..+.....
T Consensus 140 ~~~~~~~~i~ssP~v~~--~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (488)
T cd00216 140 DQVPPGYTMTGAPTIVK--K-LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG 216 (488)
T ss_pred CCcCcceEecCCCEEEC--C-EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence 110 01 1122221 2 333443 367899999999999888765211
Q ss_pred -e-eEEEEecCCCEEEEEEcCC------------------eEEEEECCCCeEEEEEeC--CCCC---E-EEEEEc----C
Q 003279 682 -A-TQMRFQPRLGRILAAAIEN------------------YISILDVETQVCRLKLQG--HKNQ---V-HSVCWN----T 731 (834)
Q Consensus 682 -i-~~l~~sp~g~~ll~~s~dg------------------~I~iwDl~t~~~~~~l~~--h~~~---I-~sl~~s----p 731 (834)
+ ....+.+.++.+++++.++ .|.-+|.++++.+..+.. |... . ....+. -
T Consensus 217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~ 296 (488)
T cd00216 217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK 296 (488)
T ss_pred CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence 0 1244555667888887665 799999999999887653 2110 0 001111 1
Q ss_pred CCC---EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE------------------EcCCeE
Q 003279 732 SGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI------------------GCYETL 789 (834)
Q Consensus 732 dg~---~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sg------------------s~dg~I 789 (834)
++. ++++++ +|.+..+|.++++ .+-..... ...++.+| ..++++ ..++.|
T Consensus 297 ~g~~~~~V~~g~~~G~l~ald~~tG~---~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l 368 (488)
T cd00216 297 DGKPVPAIVHAPKNGFFYVLDRTTGK---LISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGL 368 (488)
T ss_pred CCCeeEEEEEECCCceEEEEECCCCc---EeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEE
Confidence 333 455666 8999999999984 44333211 11123333 233332 235688
Q ss_pred EEEECCCCeEE-EeccC--C------CCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 790 ELWNMTENKTL-TLSAH--D------KLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 790 ~Iwdl~~~~~~-~l~~h--~------~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.-+|+.+++.+ ..... . .+...-...-.+.+|+.++.||.|+.+|
T Consensus 369 ~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 369 AALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred EEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 89999999887 22111 0 1111111112456788888899887664
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.6e-06 Score=95.13 Aligned_cols=183 Identities=15% Similarity=0.188 Sum_probs=129.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceee
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 631 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~ 631 (834)
.+.|+|++++ +++|+.|+.+|.|++++.... . .+...|... ..+|.+++|||.||+|.|..+.+.+. ..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-IT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc-ce
Confidence 3558888887 679999999999999986543 2 333345444 55899999999999999999887664 23
Q ss_pred eeccCCCCeEEEEEccC----CCcEEEEEeCCCcEEEEECC---CCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003279 632 TFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSIN---NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 704 (834)
Q Consensus 632 ~~~~h~~~V~sl~fspd----g~~llasgs~Dg~I~lwDl~---s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~ 704 (834)
.+ ....++.+|+++|+ ....+++|+..| +.++.-+ ....+..-...+.|.++.|.-+ +++-..|-.|+
T Consensus 108 ~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~---lIAWand~Gv~ 182 (846)
T KOG2066|consen 108 QY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN---LIAWANDDGVK 182 (846)
T ss_pred eE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc---EEEEecCCCcE
Confidence 22 34578999999998 233566888777 7776532 2223323334678999999743 66666677799
Q ss_pred EEECCCCeEEEEEeCCCCC------EEEEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003279 705 ILDVETQVCRLKLQGHKNQ------VHSVCWNTSGEYLASVSDELVRVWSIGS 751 (834)
Q Consensus 705 iwDl~t~~~~~~l~~h~~~------I~sl~~spdg~~LasgsDg~I~IwDl~s 751 (834)
|||+.+...+..+...... ...+.|.++. .|+.|-..+|+|..++.
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGDSVKICSIKK 234 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCCeEEEEEEec
Confidence 9999998887776643332 2467887655 45566666788888873
|
|
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.6e-07 Score=61.94 Aligned_cols=27 Identities=41% Similarity=0.685 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhc
Q 003279 10 KMLDVYIYDYLLKRKLHASAKAFQTEG 36 (834)
Q Consensus 10 ~~L~~yiy~yl~k~~~~~~A~~~~~e~ 36 (834)
+.||.+|||||+++||.+||++|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 479999999999999999999999985
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00023 Score=77.06 Aligned_cols=256 Identities=9% Similarity=0.091 Sum_probs=159.0
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC----------CCeEEEEecCCCCceeeeec--cCC----
Q 003279 574 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFT--GHS---- 637 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~----------Dg~I~IWDl~s~~~~i~~~~--~h~---- 637 (834)
+.|+|+|.++++.+..+.. +..-.+..+|+++.+++++. .-.|.+||..+-........ .|.
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999998877753 22345778999999887642 34799999987543221111 111
Q ss_pred CCeEEEEEccCCCcEEEEE-eCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEE
Q 003279 638 TTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRL 715 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasg-s~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~-t~~~~~ 715 (834)
.....+.++.+++++++.- +---.|.|.|+..++.+..+...+...-.-. . ...|.+.|.||.+..+.+. .|+...
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~-~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPS-G-NRGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEE-E-TTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEec-C-CCceEEEecCCceEEEEECCCCCEeE
Confidence 2233457778877665432 3345788999999999888876543322222 2 3568899999999999887 454432
Q ss_pred EE----eCCCCCE-EEEEEcCCC-CEEEEEeCCeEEEEEcCCCCCceeEEEeecC----------CCceEEEEEeCCCCE
Q 003279 716 KL----QGHKNQV-HSVCWNTSG-EYLASVSDELVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFHPTFPS 779 (834)
Q Consensus 716 ~l----~~h~~~I-~sl~~spdg-~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~----------~~~I~svafspdg~~ 779 (834)
+. .....++ ..-+++..+ .+++...+|.|+-.|+..... .....+... .+...-+++++....
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~-~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA-KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE-EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc-cccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 22 1122222 234455444 455544499999999887632 222222211 122345788887776
Q ss_pred EEEEEcC--------C--eEEEEECCCCeEEEeccCCCCeEEEEEeCCCC-EEEEE-ecCCcEEEeC
Q 003279 780 LLVIGCY--------E--TLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASA-SHDKCVKIWK 834 (834)
Q Consensus 780 L~sgs~d--------g--~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~-~LaSg-s~DG~I~IWd 834 (834)
|++.-.. + .|.+||+.+++.+....-+.++.+|..+.+.+ +|++. ..++.|.|||
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 6664221 1 68899999999985555556788999999877 66554 4578999986
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.6e-05 Score=88.70 Aligned_cols=205 Identities=15% Similarity=0.126 Sum_probs=133.9
Q ss_pred cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC---C-CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCC
Q 003279 575 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---D-RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 650 (834)
Q Consensus 575 ~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~---D-g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~ 650 (834)
.+.+-|.+ +.....+..-...+..-+|+|++..++..+. . ..++++|+.++..... ....+.-...+|+|||+
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i--~~~~g~~~~P~fspDG~ 250 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI--LNFNGNNGAPAFSPDGS 250 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee--eccCCccCCccCCCCCC
Confidence 34444444 5555566556667888899999887665532 2 4699999998764221 22334455678999999
Q ss_pred cEEEEEeCCCc--EEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEEeCCCCCEE
Q 003279 651 DLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVH 725 (834)
Q Consensus 651 ~llasgs~Dg~--I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d-g--~I~iwDl~t~~~~~~l~~h~~~I~ 725 (834)
.++++...||. |+++|+..+.........+.-..-.|+|+|++++.++.. | .|.++|++..... .+......-.
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~~~~~ 329 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSGGGNS 329 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccCCCCc
Confidence 99999888875 666788777644422233334467899999999988764 3 5888888876543 2322333333
Q ss_pred EEEEcCCCCEEEEEe--CCe--EEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003279 726 SVCWNTSGEYLASVS--DEL--VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 787 (834)
Q Consensus 726 sl~~spdg~~Lasgs--Dg~--I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg 787 (834)
...|+|||++|+..+ +|. |.+.|+.++.. +..+ ..........|.+++..++..+..+
T Consensus 330 ~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~---~~~l-t~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 330 NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK---IRIL-TSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred CccCCCCCCEEEEEeccCCceeeEEeccCCCCc---EEEc-cccccCCCCCcCCCCceEEEeccCC
Confidence 789999999999888 554 77777776632 2222 2233344557888888777665544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.6e-05 Score=88.87 Aligned_cols=207 Identities=14% Similarity=0.245 Sum_probs=140.9
Q ss_pred EECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC-----cEEEEECCCC-----
Q 003279 601 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNG----- 670 (834)
Q Consensus 601 ~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg-----~I~lwDl~s~----- 670 (834)
+|++.+..++.|+.+|.|.+++-. -..+..+..+...|...-|.-++..+|++.+.|+ .|++||++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 456788899999999988887654 2334666667666444445555556666666554 5899998643
Q ss_pred -cee---eEeec-----CCCeeEEEEecCCCEEEEEEcCCeEEEEECC----CCeEEEEEeCCCCCEEEEEEcCCCCE-E
Q 003279 671 -SCA---GVFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVE----TQVCRLKLQGHKNQVHSVCWNTSGEY-L 736 (834)
Q Consensus 671 -~~i---~~~~~-----~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~----t~~~~~~l~~h~~~I~sl~~spdg~~-L 736 (834)
.++ +.+.+ ..++.+++++.+-..+++|..+|.|..+.-+ .+....-......+|+.+++..++.. +
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 233 22321 4568889999999999999999999998532 12222222235679999999988887 5
Q ss_pred EEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-Eec-cCCCCeEEE
Q 003279 737 ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-AHDKLVSSL 812 (834)
Q Consensus 737 asgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~-~h~~~V~~l 812 (834)
+++....|.+|.+.... .....+..++..+.|..+++....+++++. ..|++|+.+..... .+. +|......+
T Consensus 188 Fv~Tt~~V~~y~l~gr~--p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~~~~ 262 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRT--PSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKEMLVF 262 (933)
T ss_pred EEEecceeEEEEecCCC--cceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEEEEEE
Confidence 55557789999998432 345557788889999999887764555544 47999998865544 555 555544433
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00044 Score=70.86 Aligned_cols=258 Identities=11% Similarity=0.071 Sum_probs=140.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEE
Q 003279 563 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 642 (834)
Q Consensus 563 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~s 642 (834)
-|++++.|+..|.+++.+.++|.....+.....-=......+++..+..++.|++.+..|..+... +...+...+...+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~c-VykskcgG~~f~s 140 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGC-VYKSKCGGGTFVS 140 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccce-EEecccCCceecc
Confidence 467899999999999999999987766643322222344566889999999999999999998654 4433333333334
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEECCCC--ceeeEeecCCCeeE--EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 003279 643 LDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKCQSGATQ--MRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 718 (834)
Q Consensus 643 l~fspdg~~llasgs~Dg~I~lwDl~s~--~~i~~~~~~~~i~~--l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~ 718 (834)
-+..|-...++ .+...|.|.-...+.. ..+..+....++.. ++. +..+..++.||.+.-+| ..|+.+..+.
T Consensus 141 P~i~~g~~sly-~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 141 PVIAPGDGSLY-AAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred ceecCCCceEE-EEeccceEEEEccCCCCcceehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeec
Confidence 45555323233 4444666666666655 23333333333322 222 34566777788888888 6666666544
Q ss_pred CCCCCEE-EEEEc-CCCCEEEEEeCCe---------EEEEEcCCCCCceeEEEeecCCCceEEEEEeC-C---CCEEEEE
Q 003279 719 GHKNQVH-SVCWN-TSGEYLASVSDEL---------VRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-T---FPSLLVI 783 (834)
Q Consensus 719 ~h~~~I~-sl~~s-pdg~~LasgsDg~---------I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp-d---g~~L~sg 783 (834)
..++|. .-+-+ |....|+.+.++. -.+|...++ ...+...... ....++. . .++|..+
T Consensus 216 -t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g---~t~~vy~~p~---l~F~~h~~~~S~~~ll~~~ 288 (354)
T KOG4649|consen 216 -TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSG---TTLHVYLSPK---LRFDLHSPGISYPKLLRRS 288 (354)
T ss_pred -CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCC---cEEEEEeCcc---cceeccCCCCcchhhhhhh
Confidence 333432 12222 3334444444332 234554444 1111111100 0112211 1 2456778
Q ss_pred EcCCeEEEEECCCCeEEEeccCCCCeEEE---EE------eC--CCCEEEEEecCCcEEEeC
Q 003279 784 GCYETLELWNMTENKTLTLSAHDKLVSSL---AA------ST--VNGMVASASHDKCVKIWK 834 (834)
Q Consensus 784 s~dg~I~Iwdl~~~~~~~l~~h~~~V~~l---af------sp--dg~~LaSgs~DG~I~IWd 834 (834)
+.||++.|.-.... ......|.+.+-.+ .. +| -+.+|+.|+.|..|+-||
T Consensus 289 s~dgkv~il~~~~s-l~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cld 349 (354)
T KOG4649|consen 289 SGDGKVMILMTSKS-LAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLD 349 (354)
T ss_pred cCCCcEEEEEeccc-ccccccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEEe
Confidence 88998888743322 22223333322222 11 12 024577788999999986
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00033 Score=81.85 Aligned_cols=228 Identities=14% Similarity=0.102 Sum_probs=133.9
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEeccCCCC--eEEEEECC--CCCEEEEEe---------CCCeEEEEecCCCCceee
Q 003279 565 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--ITDVRFSP--SLSRLATSS---------ADRTVRVWDTENPDYSLR 631 (834)
Q Consensus 565 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~--I~~l~fsp--dg~~Latgs---------~Dg~I~IWDl~s~~~~i~ 631 (834)
..++.++.++.|+.+|.++++.+-.+...... -..+.-+| .+..++.++ .++.|..+|..+++...+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 57788889999999999999999776543321 00111111 124455553 368899999998875443
Q ss_pred eeccCCC-------------------Ce-EEEEEccCCCcEEEEEeCCC------------------cEEEEECCCCcee
Q 003279 632 TFTGHST-------------------TV-MSLDFHPSKEDLLCSCDNNS------------------EIRYWSINNGSCA 673 (834)
Q Consensus 632 ~~~~h~~-------------------~V-~sl~fspdg~~llasgs~Dg------------------~I~lwDl~s~~~i 673 (834)
....... .| ...++.+.+. +++.++.++ .|..+|+++++.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 3221110 01 1233444444 444554444 7999999999999
Q ss_pred eEeecCCC-e------eEEEEe----cCCC---EEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 003279 674 GVFKCQSG-A------TQMRFQ----PRLG---RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 674 ~~~~~~~~-i------~~l~~s----p~g~---~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasg 739 (834)
..+..... . ....+. -++. .+++++.+|.++.+|.++++.+...... ...++.+| +..++..
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~ 345 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGA 345 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEcc
Confidence 88764211 1 111111 1232 5777888999999999999988765421 11223333 2222211
Q ss_pred ------------------eCCeEEEEEcCCCCCceeEEEeecCC--------CceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003279 740 ------------------SDELVRVWSIGSGSKGECIHELSCTG--------NKFHSCVFHPTFPSLLVIGCYETLELWN 793 (834)
Q Consensus 740 ------------------sDg~I~IwDl~s~~~~~~i~~~~~~~--------~~I~svafspdg~~L~sgs~dg~I~Iwd 793 (834)
.++.|..+|+.++ +.+-...... .........-.+..|++++.|+.|+.+|
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG---~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTG---KVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred ccccccCcccccCCCCCCCceEEEEEeCCCC---cEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 1567888888887 3333333220 1111111122456788999999999999
Q ss_pred CCCCeEE
Q 003279 794 MTENKTL 800 (834)
Q Consensus 794 l~~~~~~ 800 (834)
.++|+.+
T Consensus 423 ~~tG~~l 429 (488)
T cd00216 423 ATTGKEL 429 (488)
T ss_pred CCCCcee
Confidence 9999988
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00019 Score=76.79 Aligned_cols=193 Identities=12% Similarity=0.124 Sum_probs=136.7
Q ss_pred CeEEEEEccCCCcEEEEEeCCC-cEEEEECCCCceeeEeecCCC---eeEEEEecCCCEEEEEEc-----CCeEEEEECC
Q 003279 639 TVMSLDFHPSKEDLLCSCDNNS-EIRYWSINNGSCAGVFKCQSG---ATQMRFQPRLGRILAAAI-----ENYISILDVE 709 (834)
Q Consensus 639 ~V~sl~fspdg~~llasgs~Dg-~I~lwDl~s~~~i~~~~~~~~---i~~l~~sp~g~~ll~~s~-----dg~I~iwDl~ 709 (834)
....++.+|.....++.+-.-| ...+||..+++....+..... .-..+|+++|++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 3456788897777887887666 578899999998887765333 235789999999998865 3789999999
Q ss_pred -CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-------------------eEEEEEcCCCCCceeEEE--e--ecCC
Q 003279 710 -TQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-------------------LVRVWSIGSGSKGECIHE--L--SCTG 765 (834)
Q Consensus 710 -t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg-------------------~I~IwDl~s~~~~~~i~~--~--~~~~ 765 (834)
+...+.++..|.-....+.+.|||+.|+++..| .+.+.|..++ +.+.. + ..|.
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG---~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG---ALLEQVELPPDLHQ 162 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC---ceeeeeecCccccc
Confidence 568888888888788899999999877776422 2444555665 33333 3 3366
Q ss_pred CceEEEEEeCCCCEEEEEEcCC-------eEEEEECCCC-eEEE-----eccCCCCeEEEEEeCCCCEEEEE-ecCCcEE
Q 003279 766 NKFHSCVFHPTFPSLLVIGCYE-------TLELWNMTEN-KTLT-----LSAHDKLVSSLAASTVNGMVASA-SHDKCVK 831 (834)
Q Consensus 766 ~~I~svafspdg~~L~sgs~dg-------~I~Iwdl~~~-~~~~-----l~~h~~~V~~lafspdg~~LaSg-s~DG~I~ 831 (834)
..|..+++.++|..++..-..+ -|.+++.... ..+. ...-.+.|-+|+++.++.++++. -.-|.+.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 7899999999998655544433 3444444332 1111 12345789999999999877554 4678899
Q ss_pred EeC
Q 003279 832 IWK 834 (834)
Q Consensus 832 IWd 834 (834)
+||
T Consensus 243 ~~d 245 (305)
T PF07433_consen 243 VWD 245 (305)
T ss_pred EEE
Confidence 995
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00091 Score=76.08 Aligned_cols=90 Identities=10% Similarity=0.084 Sum_probs=71.1
Q ss_pred eEEEEEcCCCCCceeEEEe-ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEE
Q 003279 743 LVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV 821 (834)
Q Consensus 743 ~I~IwDl~s~~~~~~i~~~-~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~L 821 (834)
...+|++...+. .++... ......+.+++++|+...++.|+.||.|.+||...+.... ..+.-.++.++|+|+|.+|
T Consensus 237 d~ciYE~~r~kl-qrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~-~ka~~~P~~iaWHp~gai~ 314 (545)
T PF11768_consen 237 DSCIYECSRNKL-QRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL-AKAEFIPTLIAWHPDGAIF 314 (545)
T ss_pred EEEEEEeecCce-eEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee-eeecccceEEEEcCCCcEE
Confidence 355677765432 333322 2456789999999999999999999999999998775443 3455678999999999999
Q ss_pred EEEecCCcEEEeC
Q 003279 822 ASASHDKCVKIWK 834 (834)
Q Consensus 822 aSgs~DG~I~IWd 834 (834)
++|+.-|.|.+||
T Consensus 315 ~V~s~qGelQ~FD 327 (545)
T PF11768_consen 315 VVGSEQGELQCFD 327 (545)
T ss_pred EEEcCCceEEEEE
Confidence 9999999999998
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0001 Score=83.07 Aligned_cols=261 Identities=13% Similarity=0.082 Sum_probs=139.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC--------
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-------- 625 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s-------- 625 (834)
.|+++.|.++..-|++|...|.|.||.....+... ......-....+.+- ...++.-.|-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 48999999999999999999999999765433221 000011111111110 00111122233321
Q ss_pred CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC---------CCeeEEEEec-----CC
Q 003279 626 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---------SGATQMRFQP-----RL 691 (834)
Q Consensus 626 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~---------~~i~~l~~sp-----~g 691 (834)
+-.+...+....++|++++.+.-| +++.|..+|.+.|.|++....+..-... ..++++.|.. |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 112334455567899999998654 8889999999999999988777664332 2477787763 22
Q ss_pred ---CEEEEEEcCCeEEEEECC--C-Ce----EEEEEeCCCCCEEEEE-EcCC---------------------CCEEEEE
Q 003279 692 ---GRILAAAIENYISILDVE--T-QV----CRLKLQGHKNQVHSVC-WNTS---------------------GEYLASV 739 (834)
Q Consensus 692 ---~~ll~~s~dg~I~iwDl~--t-~~----~~~~l~~h~~~I~sl~-~spd---------------------g~~Lasg 739 (834)
-.+++|+..|.+.+|.+. . +. .......+.++|..|. |+.+ .-+++++
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 358888889999999764 1 21 1122224666776665 3221 1267778
Q ss_pred eCCeEEEEEcCCCCCceeEEEeecCCCceEEEEE-----eCCCCEEEEEEcCCeEEEEECCCCeEE-Eecc----CCCCe
Q 003279 740 SDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF-----HPTFPSLLVIGCYETLELWNMTENKTL-TLSA----HDKLV 809 (834)
Q Consensus 740 sDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svaf-----spdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~----h~~~V 809 (834)
++..++|+...+. +..+...........+++ ...+..|++...+|.|++|.+..-+.+ .... ....+
T Consensus 233 Se~~irv~~~~~~---k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~ 309 (395)
T PF08596_consen 233 SESDIRVFKPPKS---KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL 309 (395)
T ss_dssp -SSEEEEE-TT------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred cccceEEEeCCCC---cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence 8999999999876 444443322223334445 235677888899999999999998776 2222 22345
Q ss_pred EEEEEeCCCCEEEEEecC
Q 003279 810 SSLAASTVNGMVASASHD 827 (834)
Q Consensus 810 ~~lafspdg~~LaSgs~D 827 (834)
...+++++|..++-.+..
T Consensus 310 ~~ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 310 SSSSISRNGDIFYWTGPS 327 (395)
T ss_dssp TT-EE-TTS-EEEE-SSS
T ss_pred cccEECCCCCEEEEeCcc
Confidence 567778888877666543
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.7e-05 Score=85.16 Aligned_cols=273 Identities=11% Similarity=0.114 Sum_probs=152.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCce
Q 003279 551 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 629 (834)
Q Consensus 551 H~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~ 629 (834)
|...|.--+++..+++|+.|+.-|.+++|+-..+.... ...+..+.+..+..+++..++|.|+..|.|.++-+......
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 34445556677788999999999999999966654432 22234556667778888888999999999999988763321
Q ss_pred eee-----eccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC-----ceeeEeecCCCeeEEEEecCCCEEEEEEc
Q 003279 630 LRT-----FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQPRLGRILAAAI 699 (834)
Q Consensus 630 i~~-----~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~-----~~i~~~~~~~~i~~l~~sp~g~~ll~~s~ 699 (834)
-.. -..|...|++++|++++.. +++|+..|.|.+-.+... .....+...+.|..+.+.. .++++++.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k-~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl 188 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMK-LYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTL 188 (726)
T ss_pred cceeeccccccCCceEEEEEecccccE-EeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhh
Confidence 111 1237789999999999875 559999999999888762 1222333456676666653 34444443
Q ss_pred CCeEEEEECCCCeEEEEEe-CCCC-CEEEEEEcCC-----CCEEEEEeCCeEEEEEcCCCCCceeEEEeec---------
Q 003279 700 ENYISILDVETQVCRLKLQ-GHKN-QVHSVCWNTS-----GEYLASVSDELVRVWSIGSGSKGECIHELSC--------- 763 (834)
Q Consensus 700 dg~I~iwDl~t~~~~~~l~-~h~~-~I~sl~~spd-----g~~LasgsDg~I~IwDl~s~~~~~~i~~~~~--------- 763 (834)
-.. .+++.+.+.....-+ ..++ .-...||-|. ...|+++--| .|+|..+-.......+.++.
T Consensus 189 ~r~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G~V~~Thqfk~ala~~p~p~ 266 (726)
T KOG3621|consen 189 TRC-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAGEVIKTHQFKDALARPPAPE 266 (726)
T ss_pred hhh-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeecceeEEEeeehhhhhccCCCCc
Confidence 332 344444322110000 0111 1233455443 2344444433 56676543211111111110
Q ss_pred --CC----------------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEe
Q 003279 764 --TG----------------NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 764 --~~----------------~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs 825 (834)
+. -....+.+- .+..+++-+.-| |+|+|..+..++........|.+++.+ ++-|+.-.
T Consensus 267 i~~~s~esp~~~~~~~~~q~ls~~k~~~l-~~~~vLa~te~G-iyv~d~~~~~v~l~se~~~DI~dVs~~--~neiFvL~ 342 (726)
T KOG3621|consen 267 IPIRSLESPNQRSLPSGTQHLSLSKSSTL-HSDRVLAWTEVG-IYVFDSNNSQVYLWSEGGHDILDVSHC--GNEIFVLN 342 (726)
T ss_pred ccCCCcCCccccCCCCCccccccceeEEe-ecceEEEeecce-EEEEEeccceEEEeecCCCceeEEeec--CceEEEEe
Confidence 00 001111111 122445555554 888998888777665555667666544 44444445
Q ss_pred cCCcEEE
Q 003279 826 HDKCVKI 832 (834)
Q Consensus 826 ~DG~I~I 832 (834)
.||.+++
T Consensus 343 ~d~~l~~ 349 (726)
T KOG3621|consen 343 LDRGLKV 349 (726)
T ss_pred cCCceeE
Confidence 5554443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.9e-05 Score=88.34 Aligned_cols=189 Identities=12% Similarity=0.197 Sum_probs=128.0
Q ss_pred eeeeccCCCCeEEEEEccCCCcEEEEEeCC---CcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc-CC--eE
Q 003279 630 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YI 703 (834)
Q Consensus 630 i~~~~~h~~~V~sl~fspdg~~llasgs~D---g~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg--~I 703 (834)
...+......+..-+|+|++..+.+..-.. ..+.++|+++++...............|+|||++|+.+.. || .|
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccE
Confidence 344444556677888999988776654333 3599999999988888877777888899999999887765 44 68
Q ss_pred EEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003279 704 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 779 (834)
Q Consensus 704 ~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~ 779 (834)
+++|+..+.... +....+.-+.-.|+|||++|+..+ .| .|.+++.+.... ..+......-..-.|+|||++
T Consensus 265 y~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----~riT~~~~~~~~p~~SpdG~~ 339 (425)
T COG0823 265 YLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----TRLTFSGGGNSNPVWSPDGDK 339 (425)
T ss_pred EEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce----eEeeccCCCCcCccCCCCCCE
Confidence 888998876333 544444445779999999999888 34 577777776532 233323333337789999999
Q ss_pred EEEEEcC-C--eEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEE
Q 003279 780 LLVIGCY-E--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 823 (834)
Q Consensus 780 L~sgs~d-g--~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaS 823 (834)
|+..+.. | .|.+.|+.++.......+.......+|.++++.++.
T Consensus 340 i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMF 386 (425)
T ss_pred EEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEE
Confidence 9888753 3 477777766653433334444444555555554443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00037 Score=81.58 Aligned_cols=195 Identities=13% Similarity=0.169 Sum_probs=136.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCC-eEEEEECCCCCEEEEEeCCC-----eEEEEecCCCC
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLATSSADR-----TVRVWDTENPD 627 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~-I~~l~fspdg~~Latgs~Dg-----~I~IWDl~s~~ 627 (834)
.|+| |++.+..+|.|+.+|.|.+.+ ...+.+..+..+... |..+-...+..+|++.+.|+ .|+|||++.-+
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4444 567788999999999999987 445666777777777 44444444446888877765 48999987431
Q ss_pred -----cee---eeec----cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC---C-C-ceeeEeecCCCeeEEEEecC
Q 003279 628 -----YSL---RTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---N-G-SCAGVFKCQSGATQMRFQPR 690 (834)
Q Consensus 628 -----~~i---~~~~----~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~---s-~-~~i~~~~~~~~i~~l~~sp~ 690 (834)
.++ +.+. ....++.+++.+.+ -..+|+|-.+|.|.++.=+ . + +.........+|+.+.+..+
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 122 2221 13467888899887 4467788889999988521 1 1 22223334678999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeE-EEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003279 691 LGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 752 (834)
Q Consensus 691 g~~ll~~s~dg~I~iwDl~t~~~-~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~ 752 (834)
+..++.+.....|.+|.+....+ ...+..|...+.|..+++...-++++++..|.+||....
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGR 245 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCc
Confidence 88866677778899999885443 444677888899999987666577777788999998754
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.5e-06 Score=61.83 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=35.9
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 580 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd 580 (834)
+.+.++.+|.+.|++|+|+|++.+|++|+.|+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.7e-06 Score=88.61 Aligned_cols=158 Identities=14% Similarity=0.210 Sum_probs=117.4
Q ss_pred EEEcCC--CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC----Cceee
Q 003279 558 CHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP----DYSLR 631 (834)
Q Consensus 558 l~fSpd--g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~----~~~i~ 631 (834)
|+|+-+ |-. ++.+.+-.|-+-|++++-.- .|. ..+.|.++.|.-.+.+++.|+..|.|.++|++.. .++..
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 456532 323 44556678889998886543 332 5677999999988999999999999999999865 34333
Q ss_pred eeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce---eeEeecCCC---eeEEEEecCCCEEEEEEcCCeEEE
Q 003279 632 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFKCQSG---ATQMRFQPRLGRILAAAIENYISI 705 (834)
Q Consensus 632 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~---i~~~~~~~~---i~~l~~sp~g~~ll~~s~dg~I~i 705 (834)
.+ -|...|+++.........|.+.+.+|.|++||++.-++ +..+..+.. ..-+.+.+..+.+++++.|...+|
T Consensus 294 rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi 372 (425)
T KOG2695|consen 294 RL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI 372 (425)
T ss_pred EE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence 33 48899999987763445666788899999999998776 666664322 223445667888999999999999
Q ss_pred EECCCCeEEEEEeC
Q 003279 706 LDVETQVCRLKLQG 719 (834)
Q Consensus 706 wDl~t~~~~~~l~~ 719 (834)
|.++.+....++..
T Consensus 373 Wsl~~ghLl~tipf 386 (425)
T KOG2695|consen 373 WSLDSGHLLCTIPF 386 (425)
T ss_pred EecccCceeeccCC
Confidence 99999988887764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.1e-05 Score=90.81 Aligned_cols=255 Identities=13% Similarity=0.082 Sum_probs=144.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC-Cceeeee
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP-DYSLRTF 633 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~-~~~i~~~ 633 (834)
++++||+|..-.|+.|-.-|.+.+|...+.+.-.....|..+|..+.|+++|..++|+..-|.|.+|.++-- ......+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~ 141 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI 141 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence 567999999989999999999999998888877777899999999999999999999999999999988732 2111222
Q ss_pred ccCC--C--CeEEEEEccCCCcE------EEEEeCCCcEE-EEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCe
Q 003279 634 TGHS--T--TVMSLDFHPSKEDL------LCSCDNNSEIR-YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 702 (834)
Q Consensus 634 ~~h~--~--~V~sl~fspdg~~l------lasgs~Dg~I~-lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~ 702 (834)
..|. . ...|...++++..+ .++|+ +..+- .++.+.....+...+ . -.|+|..|++++.+|+
T Consensus 142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgD-e~alD~~fnwk~~~a~rs~~k-s------gv~~g~~F~~~~~~Gt 213 (1416)
T KOG3617|consen 142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGD-ESALDEPFNWKESLAERSDEK-S------GVPKGTEFLFAGKSGT 213 (1416)
T ss_pred hhhHhhceeeEEEEecCCChHHhhhhhhhhccCc-hhhhcccccCccchhhccccc-c------CCCCCcEEEEEcCCce
Confidence 2232 2 23455556664322 23333 33332 444332211111111 1 1467888999999999
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce--eEEEeecCCCceEEEEEeCCCCE
Q 003279 703 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE--CIHELSCTGNKFHSCVFHPTFPS 779 (834)
Q Consensus 703 I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~--~i~~~~~~~~~I~svafspdg~~ 779 (834)
|+..|-.. ++....+. .+. .-+-|.+...-|++.. +-++.+|-+......+ +...+.+..+. ..|.
T Consensus 214 Vyyvdq~g-~~~~V~k~-dS~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~Gg-------rqGg- 282 (1416)
T KOG3617|consen 214 VYYVDQNG-RQRTVHKL-DSE-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGG-------RQGG- 282 (1416)
T ss_pred EEEEcCCC-cEEEEEEc-cch-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCC-------ccCc-
Confidence 99888543 33222221 111 1234444333333333 3333333322211000 00111111100 0122
Q ss_pred EEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 780 LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 780 L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++++-..|.+ +..+.. -......+.|++++..+..|+.|...|.|.+|.
T Consensus 283 iA~sEssGvL-----r~~eKy-g~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~ 331 (1416)
T KOG3617|consen 283 IACSESSGVL-----RKSEKY-GLELGEGILCMCYGEKEIRLWAGTKEGNVTIWL 331 (1416)
T ss_pred cccccccccc-----cCCcch-hhhcCCceEEEEEeccceEEEecccCCcEEEee
Confidence 3333333311 111111 112345688888888888888888888888884
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00025 Score=85.71 Aligned_cols=227 Identities=14% Similarity=0.204 Sum_probs=136.1
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce
Q 003279 593 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 672 (834)
Q Consensus 593 h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~ 672 (834)
..+.|.++.|.-+..-++.+..+|.|.+-|..+... .....-...|.+++|+||.. +++..+.+.+|.+-+ .+..+
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~--eivg~vd~GI~aaswS~Dee-~l~liT~~~tll~mT-~~f~~ 142 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLEL--EIVGNVDNGISAASWSPDEE-LLALITGRQTLLFMT-KDFEP 142 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccce--eeeeeccCceEEEeecCCCc-EEEEEeCCcEEEEEe-ccccc
Confidence 346899999999999999999999999998887543 33344567899999999977 454555556555433 22222
Q ss_pred eeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC----------eEEEEEeCCCCCEEEEEEcCCCCEEEEEe--
Q 003279 673 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ----------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-- 740 (834)
Q Consensus 673 i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~----------~~~~~l~~h~~~I~sl~~spdg~~Lasgs-- 740 (834)
+..... ...-.+. ..++.++....=.-|.-..+ ........-.+.=++|+|--||.|+++..
T Consensus 143 i~E~~L-----~~d~~~~-sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~ 216 (1265)
T KOG1920|consen 143 IAEKPL-----DADDERK-SKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVE 216 (1265)
T ss_pred hhcccc-----ccccccc-cccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEe
Confidence 222111 0000111 11223332221111111111 10000001112235799999999999843
Q ss_pred ---C-CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc---CCeEEEEECCCCe---EE-EeccCCCCe
Q 003279 741 ---D-ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC---YETLELWNMTENK---TL-TLSAHDKLV 809 (834)
Q Consensus 741 ---D-g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~---dg~I~Iwdl~~~~---~~-~l~~h~~~V 809 (834)
+ ..|+|||-+ + ..-..-....+.-.+++|-|.|..+++... ++.|.+|.-..-+ .. .+......|
T Consensus 217 ~~~~~RkirV~drE-g---~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~v 292 (1265)
T KOG1920|consen 217 SETGTRKIRVYDRE-G---ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEV 292 (1265)
T ss_pred ccCCceeEEEeccc-c---hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccch
Confidence 4 689999976 3 111122223344568899999998888754 4479999865432 22 333344459
Q ss_pred EEEEEeCCCCEEEE---EecCCcEEEe
Q 003279 810 SSLAASTVNGMVAS---ASHDKCVKIW 833 (834)
Q Consensus 810 ~~lafspdg~~LaS---gs~DG~I~IW 833 (834)
..++|+.++.+||+ +.....|++|
T Consensus 293 e~L~Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 293 EELAWNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred heeeecCCCCceeeeecccccceEEEE
Confidence 99999999999987 4444459998
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.2e-06 Score=61.35 Aligned_cols=39 Identities=36% Similarity=0.548 Sum_probs=37.0
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
++++.++.+|.+.|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00013 Score=84.66 Aligned_cols=215 Identities=11% Similarity=0.056 Sum_probs=135.4
Q ss_pred EcCCCCEEEEE-eCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC----eEEEEecCCCCceeeeec
Q 003279 560 FSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR----TVRVWDTENPDYSLRTFT 634 (834)
Q Consensus 560 fSpdg~~Lasg-s~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg----~I~IWDl~s~~~~i~~~~ 634 (834)
+++||+.+... -..+.+.+.|.++.+....+..-. ....+.++++++++++.+.+. ++...+..+... +..+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~-~vvfn 277 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDW-VVVFN 277 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCce-EEEEc
Confidence 45566655332 234667788888887777765433 446789999999998886432 333333322111 11111
Q ss_pred cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-----CceeeEeecCCCeeEEEEecCCCEEEEEEc-CCeEEEEEC
Q 003279 635 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDV 708 (834)
Q Consensus 635 ~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s-----~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl 708 (834)
-. .+ .++.++|++.++ .++.|.++|..+ .+.+..+........+.++|||+++++++. ++.|.|+|+
T Consensus 278 i~--~i--ea~vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv 350 (635)
T PRK02888 278 IA--RI--EEAVKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDV 350 (635)
T ss_pred hH--HH--HHhhhCCCEEEE---CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEC
Confidence 00 00 023456665554 267899999998 567888888899999999999999988876 799999999
Q ss_pred CCCeE------------EEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCC------CCC-ceeEEEeecCCCce
Q 003279 709 ETQVC------------RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS------GSK-GECIHELSCTGNKF 768 (834)
Q Consensus 709 ~t~~~------------~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s------~~~-~~~i~~~~~~~~~I 768 (834)
.+.+. +.+..- .......+|+++|..+.+.. |..|..|++.. ++. ...+..+..|-.+.
T Consensus 351 ~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pg 429 (635)
T PRK02888 351 RKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPG 429 (635)
T ss_pred hhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccc
Confidence 87542 333332 22334678999998777777 99999999876 211 13344444443332
Q ss_pred EEE-----EEeCCCCEEEEEE
Q 003279 769 HSC-----VFHPTFPSLLVIG 784 (834)
Q Consensus 769 ~sv-----afspdg~~L~sgs 784 (834)
... .-.++|++|++..
T Consensus 430 h~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 430 HNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred eeeecCCCcCCCCCCEEEEcc
Confidence 222 2356677766643
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0004 Score=79.40 Aligned_cols=221 Identities=12% Similarity=0.147 Sum_probs=121.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE-ecCCCCc
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW-DTENPDY 628 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW-Dl~s~~~ 628 (834)
...-....+.++|+|++++++ .||...||.....+.... +.-..++|.+.+ .+|+-...++|.|+ ++....
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~- 101 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEV- 101 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-T-
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCcccc-
Confidence 344457889999999999985 478888998555555432 334578898854 57777678899996 443222
Q ss_pred eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 003279 629 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV 708 (834)
Q Consensus 629 ~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl 708 (834)
...+.. ...+..|-. |. +|+..+ ++.|.+||+.+++.+..+.... |..+.|++++.+++..+.+ .++|++.
T Consensus 102 -~k~i~~-~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 102 -VKSIKL-PFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp -T------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred -ceEEcC-CcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 112221 122344432 55 444444 4589999999999999998653 8999999999988888754 5666554
Q ss_pred CCC-----------eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003279 709 ETQ-----------VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 777 (834)
Q Consensus 709 ~t~-----------~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg 777 (834)
+.. .....+..-...|.+.+|..+ -++++... .|+. +-.+ ....+..-..++.-+.+.+..
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~-~lkY--l~~G----e~~~i~~ld~~~yllgy~~~~ 244 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN-HLKY--LVNG----ETGIIAHLDKPLYLLGYLPKE 244 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT-EEEE--EETT----EEEEEEE-SS--EEEEEETTT
T ss_pred cchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC-eEEE--EEcC----CcceEEEcCCceEEEEEEccC
Confidence 322 012222222567899999876 33443334 7776 4444 222333335677778888877
Q ss_pred CEEEEEEcCCeEEEEECC
Q 003279 778 PSLLVIGCYETLELWNMT 795 (834)
Q Consensus 778 ~~L~sgs~dg~I~Iwdl~ 795 (834)
+.+++...++.|..+.+.
T Consensus 245 ~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 245 NRLYLIDRDGNVISYELD 262 (443)
T ss_dssp TEEEEE-TT--EEEEE--
T ss_pred CEEEEEECCCCEEEEEEC
Confidence 788888888888887764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00076 Score=76.25 Aligned_cols=220 Identities=13% Similarity=0.110 Sum_probs=154.8
Q ss_pred eEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC---CCeEEEEecCCCCcee
Q 003279 555 VESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSL 630 (834)
Q Consensus 555 V~sl~fSpdg~~L-asgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~---Dg~I~IWDl~s~~~~i 630 (834)
-.++++++++..+ ++...++.|.+.|..+.+....+.--. ....++++++++.+..+.. +++|.+.|..+.....
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 3467888888854 444456899999988877776664332 5678999999987777665 6888888888766533
Q ss_pred eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceee-----EeecCCCeeEEEEecCCCEEEEEEcC---Ce
Q 003279 631 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKCQSGATQMRFQPRLGRILAAAIE---NY 702 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~-----~~~~~~~i~~l~~sp~g~~ll~~s~d---g~ 702 (834)
. ...-..+ ..+++.|++..++++-..++.|.++|........ .+........+.+.+++.++++.... +.
T Consensus 155 ~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 155 T-IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred E-EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 4 3332334 8999999999888777789999999987766553 23334556789999999987777665 59
Q ss_pred EEEEECCCCeEEEEEeCCCC-CEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003279 703 ISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 777 (834)
Q Consensus 703 I~iwDl~t~~~~~~l~~h~~-~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg 777 (834)
+.+.|..++........-.. ....+.++|+|.++.+.. .+.+.+.|..+......+.........+..+++.+..
T Consensus 233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 99999999876665221112 466789999999998886 5789999988863322222222223345556665544
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0016 Score=72.83 Aligned_cols=229 Identities=18% Similarity=0.192 Sum_probs=135.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-c-------C---------CCCeEEEEECCCCCEEEEEeC
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-E-------H---------TQWITDVRFSPSLSRLATSSA 614 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~-------h---------~~~I~~l~fspdg~~Latgs~ 614 (834)
...+....|||+|++||... ++.|++++..++....... + - -+.-..+.|+||+++||....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 56788999999999999886 5899999988775443221 1 0 122357889999999887643
Q ss_pred C-C-----------------------------------eEEEEecCCCCce-eeee---ccCCCCeEEEEEccCCCcEEE
Q 003279 615 D-R-----------------------------------TVRVWDTENPDYS-LRTF---TGHSTTVMSLDFHPSKEDLLC 654 (834)
Q Consensus 615 D-g-----------------------------------~I~IWDl~s~~~~-i~~~---~~h~~~V~sl~fspdg~~lla 654 (834)
| . .+.|+|+.+++.. +... ..-...+..+.|.+++..+++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 2 1 2333444443321 1111 223456788899998773443
Q ss_pred -EEeCCC---cEEEEECCCCceeeEeec--CC---CeeEEEEe-cCCCEEEEEE-cCC--eEEEEECCCCeEEEEEeCCC
Q 003279 655 -SCDNNS---EIRYWSINNGSCAGVFKC--QS---GATQMRFQ-PRLGRILAAA-IEN--YISILDVETQVCRLKLQGHK 721 (834)
Q Consensus 655 -sgs~Dg---~I~lwDl~s~~~i~~~~~--~~---~i~~l~~s-p~g~~ll~~s-~dg--~I~iwDl~t~~~~~~l~~h~ 721 (834)
....+. .+.++|..++.+...+.. .. ......+. +++..++..+ .+| .|++++...+... .+....
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~ 279 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGD 279 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCc
Confidence 333332 577778887766544432 11 12355555 6666655554 455 5777788777644 555455
Q ss_pred CCEEE-EEEcCCCCEEEEEe--CC----eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003279 722 NQVHS-VCWNTSGEYLASVS--DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 785 (834)
Q Consensus 722 ~~I~s-l~~spdg~~Lasgs--Dg----~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~ 785 (834)
-.|.. +.|++++..|+..+ ++ .|+..++..+ ..+..+.+.......+.|+|++++++....
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 66754 67888877665444 22 5666666612 244455554444479999999998876554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0027 Score=68.21 Aligned_cols=225 Identities=14% Similarity=0.145 Sum_probs=132.9
Q ss_pred CCCCEEEEEeCCCcEEEEeCC-CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeee--------
Q 003279 562 PDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-------- 632 (834)
Q Consensus 562 pdg~~Lasgs~Dg~I~IWd~~-t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~-------- 632 (834)
..++.|+.|+.+| |+++++. ..+..... +...|..+...++-+.|++-+ |+.++++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4577999999988 9999983 33333333 233399999999877776664 599999998753321110
Q ss_pred -----eccCCCCeEEEE--EccCCCcEEEEEeCCCcEEEEECCCC-----ceeeEeecCCCeeEEEEecCCCEEEEEEcC
Q 003279 633 -----FTGHSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 633 -----~~~h~~~V~sl~--fspdg~~llasgs~Dg~I~lwDl~s~-----~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d 700 (834)
.......+..++ -...+...++++. ...|.+|..... +..+.+.....+..++|. ++.++++. .
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~-~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT-S 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe-C
Confidence 111223444444 1233344454443 558888877652 566777888999999999 45566655 5
Q ss_pred CeEEEEECCCCeEEEEEeCC------------CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCce
Q 003279 701 NYISILDVETQVCRLKLQGH------------KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF 768 (834)
Q Consensus 701 g~I~iwDl~t~~~~~~l~~h------------~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I 768 (834)
+...++|+.++.....+... ..++..+.. +++.+|++ .|..-.+.|.... ... ...+.- ...+
T Consensus 157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~~~~g~fv~~~G~-~~r-~~~i~W-~~~p 231 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-YDNIGVFVNKNGE-PSR-KSTIQW-SSAP 231 (275)
T ss_pred CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-ecceEEEEcCCCC-cCc-ccEEEc-CCch
Confidence 56888999976544333211 123333333 34566654 4444444454332 211 112222 2244
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEe
Q 003279 769 HSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL 802 (834)
Q Consensus 769 ~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l 802 (834)
..+++ ..++|++.+. +.|.||++.+++.+..
T Consensus 232 ~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~ 262 (275)
T PF00780_consen 232 QSVAY--SSPYLIAFSS-NSIEVRSLETGELVQT 262 (275)
T ss_pred hEEEE--ECCEEEEECC-CEEEEEECcCCcEEEE
Confidence 55555 3457777666 4599999999988743
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0028 Score=68.75 Aligned_cols=239 Identities=12% Similarity=0.133 Sum_probs=144.0
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeccCCC-------CeEEEEECCCCCEEEEEeC--CCe
Q 003279 557 SCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSPSLSRLATSSA--DRT 617 (834)
Q Consensus 557 sl~fSpdg~~Lasgs----------~Dg~I~IWd~~t~~~~~~l~~h~~-------~I~~l~fspdg~~Latgs~--Dg~ 617 (834)
.+.++||++.+++++ ..-.|.+||..+......+.-..+ ....+.++.|++++++... --.
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 467899999888753 345799999999988875532221 2234677888888776543 456
Q ss_pred EEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC-CCceeeEeec-----CCC-eeEEEEecC
Q 003279 618 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKC-----QSG-ATQMRFQPR 690 (834)
Q Consensus 618 I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~-s~~~i~~~~~-----~~~-i~~l~~sp~ 690 (834)
|.|.|+...+. +..+... + |.-..|.++.-|.+-+.||.+....+. .|+....... ..+ +..-.+...
T Consensus 120 VtVVDl~~~kv-v~ei~~P-G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 120 VTVVDLAAKKV-VGEIDTP-G---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp EEEEETTTTEE-EEEEEGT-S---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred EEEEECCCCce-eeeecCC-C---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence 88888887554 3333311 1 222234333345566669999998887 4555432211 111 234455666
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEE--EEEeCC------C----CCEEEEEEcCCCCEEEEEe----CC-------eEEEE
Q 003279 691 LGRILAAAIENYISILDVETQVCR--LKLQGH------K----NQVHSVCWNTSGEYLASVS----DE-------LVRVW 747 (834)
Q Consensus 691 g~~ll~~s~dg~I~iwDl~t~~~~--~~l~~h------~----~~I~sl~~spdg~~Lasgs----Dg-------~I~Iw 747 (834)
+..++..+.+|.|+-.|+...... ..+..- . +.-.-+++++....|++.. ++ .|-+|
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 778888999999999999876432 222211 1 1122367776555554432 22 68888
Q ss_pred EcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCeEEEecc
Q 003279 748 SIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTLSA 804 (834)
Q Consensus 748 Dl~s~~~~~~i~~~~~~~~~I~svafspdg~-~L~sgs-~dg~I~Iwdl~~~~~~~l~~ 804 (834)
|+.++ +.+..+.. ...+.++.++.+.+ .|++.+ .++.|.+||..+++.+....
T Consensus 275 D~~t~---krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 275 DLKTH---KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp ETTTT---EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred ECCCC---eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 98887 66666654 24577899998775 555554 46799999999999885443
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00042 Score=70.99 Aligned_cols=151 Identities=12% Similarity=-0.018 Sum_probs=117.1
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 003279 643 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 722 (834)
Q Consensus 643 l~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~ 722 (834)
+...++.+.+++.|+..+.+...|..+|+.+..-.....+.+-+.- -+++++.|+..|.+++.+.++|.....+..-..
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence 3344566778889999999999999999998887777777765555 467899999999999999999987777664332
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003279 723 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 797 (834)
Q Consensus 723 ~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~ 797 (834)
--......+++.++.+++ |+..+..|.++. .++...++.+....+-++.|-...|+++...|.|.--..+..
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~---~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTY---GCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEeccccc---ceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 223445678899999999 999999999887 788888888887778888885556777777776655555544
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0021 Score=67.72 Aligned_cols=200 Identities=13% Similarity=0.182 Sum_probs=116.0
Q ss_pred EEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEeccC-CCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 545 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h-~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
-+.+.+-...|..++|+|+.+ ++++....+.|..++. +|+.+..+.-. .+....|++..++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 456677777799999999755 5666667788888886 47787776433 35688999988887777766799999999
Q ss_pred cCCCCce--e---eee-----ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC---CceeeEee---------cCC
Q 003279 623 TENPDYS--L---RTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---GSCAGVFK---------CQS 680 (834)
Q Consensus 623 l~s~~~~--i---~~~-----~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s---~~~i~~~~---------~~~ 680 (834)
+...... . ..+ ..++..+-.++|++.++.++++.- ..-..+|.+.. ...+.... .-.
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE-~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE-RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE-SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC-CCChhhEEEccccCccceeeccccccccccceec
Confidence 8542211 1 111 124566899999999887886643 44455555543 21111111 124
Q ss_pred CeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCC---------CCEEEEEEcCCCCEEEEEeCCeEEEE
Q 003279 681 GATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHK---------NQVHSVCWNTSGEYLASVSDELVRVW 747 (834)
Q Consensus 681 ~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h~---------~~I~sl~~spdg~~LasgsDg~I~Iw 747 (834)
.+..+.++|..+.+++-+. +..|.++| .+|+.+..+.-.. .....|+|+++|++++++--+..++|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 5788999998777776665 57888899 5566555443222 24679999999987777666666655
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00047 Score=78.33 Aligned_cols=133 Identities=8% Similarity=0.143 Sum_probs=92.1
Q ss_pred EEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEE----eCCCc----EEEEECCCCce----eeEeecCCCeeEE
Q 003279 618 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC----DNNSE----IRYWSINNGSC----AGVFKCQSGATQM 685 (834)
Q Consensus 618 I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasg----s~Dg~----I~lwDl~s~~~----i~~~~~~~~i~~l 685 (834)
+.++.+...+..+..+........++.|+-..++.+.+. +.+|. ..+|++..++. +..+...+.+.++
T Consensus 186 l~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~c 265 (545)
T PF11768_consen 186 LHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICC 265 (545)
T ss_pred EEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEE
Confidence 444444443333333333344557777876555555543 22343 34566654432 3344567889999
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003279 686 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 752 (834)
Q Consensus 686 ~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 752 (834)
+++|+...++.|+.||.|.+||...+..... ...-.++.++|+|+|.++++|+ .|.+.+||+.-.
T Consensus 266 a~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 266 ARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9999999999999999999999988744333 2445678999999999999999 699999998754
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0016 Score=68.60 Aligned_cols=199 Identities=12% Similarity=0.171 Sum_probs=114.9
Q ss_pred eeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC--CCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003279 632 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVE 709 (834)
Q Consensus 632 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~--~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~ 709 (834)
.+.+-...+..|+|+|+.+.++++....+.|..++.. |+.++.+... .....|++..++.++++--.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4445556799999999989999999999999999975 7888887753 558889998776555555458999999884
Q ss_pred CC------eEEEEEe-----CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCC--CCCceeEEE------eecCCCceE
Q 003279 710 TQ------VCRLKLQ-----GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS--GSKGECIHE------LSCTGNKFH 769 (834)
Q Consensus 710 t~------~~~~~l~-----~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s--~~~~~~i~~------~~~~~~~I~ 769 (834)
.. .....+. .++..+..++|++.+..|+++. ..-..||.+.. ......+.. .......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 32 1112221 2445689999999877776666 55556666654 111111111 111334578
Q ss_pred EEEEeCCCCEEEEEEc-CCeEEEEECCCCeEE---Eecc--C-----CCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 770 SCVFHPTFPSLLVIGC-YETLELWNMTENKTL---TLSA--H-----DKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 770 svafspdg~~L~sgs~-dg~I~Iwdl~~~~~~---~l~~--h-----~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
.++++|....|++-+. ...|.++| .+|+++ .+.. | -...-.|+|.++|++.++ +.-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 8999998766665555 45888899 555555 2222 1 124778999999966555 466666554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0046 Score=72.76 Aligned_cols=187 Identities=10% Similarity=0.031 Sum_probs=115.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCC-CCeE---E-------EEECCCCCEEEEEeCCCeEEEEecCCCCceeee
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWIT---D-------VRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~-~~I~---~-------l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~ 632 (834)
+..|++++.++.|+-+|..+++.+-.+.... ..+. + +++ .+..++.++.|+.|..+|..+++.....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4477777788899999999999887664211 1111 1 122 2346778889999999999988764432
Q ss_pred ecc-CC--CCeEE-EEEccCCCcEEEEEe-----CCCcEEEEECCCCceeeEeecCCC----------------------
Q 003279 633 FTG-HS--TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSG---------------------- 681 (834)
Q Consensus 633 ~~~-h~--~~V~s-l~fspdg~~llasgs-----~Dg~I~lwDl~s~~~i~~~~~~~~---------------------- 681 (834)
-.. +. ..+.+ ..+. + ..+++..+ .+|.|..+|.++|+.+..+.....
T Consensus 147 ~~~~~~~~~~~tssP~v~-~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVV-K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred ccccccccccccCCcEEE-C-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 221 11 11211 1111 2 33443322 268999999999998876653111
Q ss_pred ----------e-eEEEEecCCCEEEEEEcC-----C-----------eEEEEECCCCeEEEEEeCCCCCE---------E
Q 003279 682 ----------A-TQMRFQPRLGRILAAAIE-----N-----------YISILDVETQVCRLKLQGHKNQV---------H 725 (834)
Q Consensus 682 ----------i-~~l~~sp~g~~ll~~s~d-----g-----------~I~iwDl~t~~~~~~l~~h~~~I---------~ 725 (834)
+ ..+.+.+..+.++.+..+ + .|.-.|+++|+.+..+......+ .
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 0 124667767777776622 1 68888999999988877522211 1
Q ss_pred EEEEcCCCC---EEEEEe-CCeEEEEEcCCCCC
Q 003279 726 SVCWNTSGE---YLASVS-DELVRVWSIGSGSK 754 (834)
Q Consensus 726 sl~~spdg~---~Lasgs-Dg~I~IwDl~s~~~ 754 (834)
-+.+..+|+ .++.+. +|.+++.|-++++.
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 122334665 666666 99999999998843
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0011 Score=73.06 Aligned_cols=209 Identities=12% Similarity=0.064 Sum_probs=119.0
Q ss_pred eEEEEecCCCCceeeeeccCCCCeEEEEE---ccC---CCcEEEEEeC----------CCcEEEEECCCC-----c--ee
Q 003279 617 TVRVWDTENPDYSLRTFTGHSTTVMSLDF---HPS---KEDLLCSCDN----------NSEIRYWSINNG-----S--CA 673 (834)
Q Consensus 617 ~I~IWDl~s~~~~i~~~~~h~~~V~sl~f---spd---g~~llasgs~----------Dg~I~lwDl~s~-----~--~i 673 (834)
.|++.|..+....-.........+++++. ..+ ...++++|.. .|.|.++++... + .+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 57777776654322211223344555443 222 1456655542 288999999884 2 23
Q ss_pred eEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe-EEEEEe-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcC
Q 003279 674 GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV-CRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG 750 (834)
Q Consensus 674 ~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~-~~~~l~-~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~ 750 (834)
......+.|++++-. +++ ++++.++.|.+|++...+ ....-. .....+.++... +.++++|. ...|.++.+.
T Consensus 83 ~~~~~~g~V~ai~~~--~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF--NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEESS-EEEEEEE--TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEE
T ss_pred EEEeecCcceEhhhh--CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEE
Confidence 344457888888877 345 455556999999998776 333222 233466666655 55888888 6666666554
Q ss_pred CCCCceeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-------C--eEE--EeccCCCCeEEE---EE
Q 003279 751 SGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE-------N--KTL--TLSAHDKLVSSL---AA 814 (834)
Q Consensus 751 s~~~~~~i~~~--~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~-------~--~~~--~l~~h~~~V~~l---af 814 (834)
... ..+..+ ......++++.|-+++..++++..+|.|.++.... + +.. ........|+++ ++
T Consensus 158 ~~~--~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l 235 (321)
T PF03178_consen 158 EEN--NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL 235 (321)
T ss_dssp TTT--E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred ccC--CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence 321 222222 23355678888886667899999999999987753 2 222 223345667777 44
Q ss_pred eCC--CC------EEEEEecCCcEEE
Q 003279 815 STV--NG------MVASASHDKCVKI 832 (834)
Q Consensus 815 spd--g~------~LaSgs~DG~I~I 832 (834)
.|. +. .++.++.+|.|.+
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eecCCCCcccccceEEEEecCCEEEE
Confidence 452 22 4788889998863
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0029 Score=69.78 Aligned_cols=214 Identities=13% Similarity=0.101 Sum_probs=125.3
Q ss_pred CcEEEEeCCCCeEEEEecc-CCCCeEEE---EECCC----CCEEEEEeC----------CCeEEEEecCCC-----Ccee
Q 003279 574 KKAVLWCTESFTVKSTLEE-HTQWITDV---RFSPS----LSRLATSSA----------DRTVRVWDTENP-----DYSL 630 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~-h~~~I~~l---~fspd----g~~Latgs~----------Dg~I~IWDl~s~-----~~~i 630 (834)
..|+|.|..+.+.+..+.- ....|+++ .|..+ ..+|++|+. .|.|.++++... +...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3588888888877755532 22334443 34432 467777653 289999999874 2222
Q ss_pred eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-eeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003279 631 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 709 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~-~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~ 709 (834)
.......++|++++-. ++.++++. ++.|.+|++...+ ..........+..+.....++++++|.....|.++..+
T Consensus 82 i~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence 2334457889999876 34455443 5899999998887 55555544444444444446799999988888877443
Q ss_pred C-CeEEEEE--eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC-------C-CceeEEEeecCCCceEEE---EEe
Q 003279 710 T-QVCRLKL--QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG-------S-KGECIHELSCTGNKFHSC---VFH 774 (834)
Q Consensus 710 t-~~~~~~l--~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~-------~-~~~~i~~~~~~~~~I~sv---afs 774 (834)
. ...+..+ ......++++.|-++++.++++. +|.|.++..... . ....+..+.. +..|+++ .+.
T Consensus 158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~l-g~~v~~~~~~~l~ 236 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHL-GDIVNSFRRGSLI 236 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS
T ss_pred ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEEC-CCccceEEEEEee
Confidence 2 2222222 22456788999986666777777 999999988631 1 1122333332 4556666 444
Q ss_pred C--CCC------EEEEEEcCCeEEEE
Q 003279 775 P--TFP------SLLVIGCYETLELW 792 (834)
Q Consensus 775 p--dg~------~L~sgs~dg~I~Iw 792 (834)
| .+. .++.++.+|.|.+.
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ecCCCCcccccceEEEEecCCEEEEE
Confidence 5 222 48888889988743
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.2e-06 Score=93.63 Aligned_cols=198 Identities=13% Similarity=0.119 Sum_probs=127.0
Q ss_pred CCCeEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCeE--EEEeccCCCCeEEEEECC-CCCEEEEEe----CCCeEEEEe
Q 003279 552 TSKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSS----ADRTVRVWD 622 (834)
Q Consensus 552 ~~~V~sl~fSpdg--~~Lasgs~Dg~I~IWd~~t~~~--~~~l~~h~~~I~~l~fsp-dg~~Latgs----~Dg~I~IWD 622 (834)
...+.|+++.-+. .++++|..+|.|.+-....... .....+|...+++++|++ |...||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 3457788776544 4788999999999987654322 345567889999999998 556676663 256899999
Q ss_pred cCCCC----ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-eeeEeecCCCeeEEEEecCCCEEEEE
Q 003279 623 TENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 623 l~s~~----~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~-~i~~~~~~~~i~~l~~sp~g~~ll~~ 697 (834)
+.+.- .......+......+++|..+ ..++.+|.....+.++|++... ....+. ...+..+.+.|-....++.
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~~~~~svn-Tk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSLDSVSSVN-TKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhhhhhhhhhh-hhhcccceecCCCCCceec
Confidence 98641 111111223455678899866 4567788888899999998322 111111 1245566677733335566
Q ss_pred EcCCeEEEEEC-CCCe-EEEEEeCC----CCCEEEEEEcCCCC-EEEEEe--CCeEEEEEcCC
Q 003279 698 AIENYISILDV-ETQV-CRLKLQGH----KNQVHSVCWNTSGE-YLASVS--DELVRVWSIGS 751 (834)
Q Consensus 698 s~dg~I~iwDl-~t~~-~~~~l~~h----~~~I~sl~~spdg~-~Lasgs--Dg~I~IwDl~s 751 (834)
..||.|.+||. ++-+ ++..+... ...+..++|.|... .+++.. .++|++||+..
T Consensus 214 ~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 214 NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 66999999994 3322 22222211 22488999999543 445555 56999999864
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0012 Score=74.62 Aligned_cols=207 Identities=14% Similarity=0.125 Sum_probs=123.0
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe--cc------CCCCeEEEEECC-----CC-
Q 003279 541 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EE------HTQWITDVRFSP-----SL- 606 (834)
Q Consensus 541 ~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l--~~------h~~~I~~l~fsp-----dg- 606 (834)
.|.+...+....++|++++.|.=| ++|.|..+|.+.|.|++....+..- .. ....|+++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 477888888889999999998555 9999999999999999887777552 22 344688888862 32
Q ss_pred --CEEEEEeCCCeEEEEecCC---CCcee---eeeccCCCCeEEEE-EccCC--------------------CcEEEEEe
Q 003279 607 --SRLATSSADRTVRVWDTEN---PDYSL---RTFTGHSTTVMSLD-FHPSK--------------------EDLLCSCD 657 (834)
Q Consensus 607 --~~Latgs~Dg~I~IWDl~s---~~~~i---~~~~~h~~~V~sl~-fspdg--------------------~~llasgs 657 (834)
-+|++|...|.+.+|.+.- +.+.+ .....+.+.|..|. |+.+. +.++++++
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 4688999999999998752 22211 12224567777665 32221 12444444
Q ss_pred CCCcEEEEECCCCceeeEeecCCC--eeEEEEe-----cCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC----CCEEE
Q 003279 658 NNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQ-----PRLGRILAAAIENYISILDVETQVCRLKLQGHK----NQVHS 726 (834)
Q Consensus 658 ~Dg~I~lwDl~s~~~i~~~~~~~~--i~~l~~s-----p~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~----~~I~s 726 (834)
+..|+++...+.+...... ... +..+++. ..+..|++...+|.|++|.+..-+.+..+.-+. ..+..
T Consensus 234 -e~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ 311 (395)
T PF08596_consen 234 -ESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSS 311 (395)
T ss_dssp -SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT
T ss_pred -ccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccc
Confidence 7789999998887766555 332 2234442 345668888889999999999988887776432 13345
Q ss_pred EEEcCCCCEEEEEeCCeEEEEEcC
Q 003279 727 VCWNTSGEYLASVSDELVRVWSIG 750 (834)
Q Consensus 727 l~~spdg~~LasgsDg~I~IwDl~ 750 (834)
.+++++|..++-.+...+.++.+-
T Consensus 312 ssis~~Gdi~~~~gpsE~~l~sv~ 335 (395)
T PF08596_consen 312 SSISRNGDIFYWTGPSEIQLFSVW 335 (395)
T ss_dssp -EE-TTS-EEEE-SSSEEEEEEEE
T ss_pred cEECCCCCEEEEeCcccEEEEEEE
Confidence 677889998888776666666543
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.013 Score=66.81 Aligned_cols=209 Identities=12% Similarity=0.094 Sum_probs=111.8
Q ss_pred EEEcCCCCEEEEEeCC----------C-cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC
Q 003279 558 CHFSPDGKLLATGGHD----------K-KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 558 l~fSpdg~~Lasgs~D----------g-~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~ 626 (834)
++.+|.|..||....+ . .|.||+.. |+.+..+.-..+.|.++.|+.+ ..|++...||.+++||+...
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCc
Confidence 3445555555554333 2 48899854 5666665444488999999975 45666679999999998632
Q ss_pred C-c----eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-eeeEe-ecCC---------CeeE-EEEec
Q 003279 627 D-Y----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVF-KCQS---------GATQ-MRFQP 689 (834)
Q Consensus 627 ~-~----~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~-~i~~~-~~~~---------~i~~-l~~sp 689 (834)
. . .+....-....+....+..+| +++.. .++.|.+.+-.... ..+.+ .... .... ..++.
T Consensus 112 ~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt-~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~ 188 (410)
T PF04841_consen 112 FQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLT-GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS 188 (410)
T ss_pred eeechhhhccccCcccccccccccCCCC--EEEEC-CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec
Confidence 2 0 011111111222222333233 33332 34444444322211 11111 0000 0111 23444
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-CCc
Q 003279 690 RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNK 767 (834)
Q Consensus 690 ~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-~~~ 767 (834)
+....+....++.+.+.+...... +. ..+++..+++||++++||.-. +|.+.|.+..-. +.+.++... ...
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~---~~~~e~~~~~~~~ 261 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS---EKLCEFDTDSKSP 261 (410)
T ss_pred CcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc---ceeEEeecCcCCC
Confidence 555555555566666555433211 21 346899999999999999988 788888876544 444454443 345
Q ss_pred eEEEEEeCCCC
Q 003279 768 FHSCVFHPTFP 778 (834)
Q Consensus 768 I~svafspdg~ 778 (834)
...+.|.-+..
T Consensus 262 p~~~~WCG~da 272 (410)
T PF04841_consen 262 PKQMAWCGNDA 272 (410)
T ss_pred CcEEEEECCCc
Confidence 56777766643
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.023 Score=67.02 Aligned_cols=149 Identities=13% Similarity=0.087 Sum_probs=89.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEecc--CCC--CeEE-EEECCCCCEEEEEe------CCCeEEEEecCCCCceeee
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQ--WITD-VRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~--h~~--~I~~-l~fspdg~~Latgs------~Dg~I~IWDl~s~~~~i~~ 632 (834)
+..|+.++.|+.|.-.|.++|+.+-.... +.. .+++ .... ++ .|++++ .+|.|..+|.++++.....
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 34677788899999999999999866542 111 1111 1111 34 455443 2689999999987753332
Q ss_pred eccCC------------------------------CCeE-EEEEccCCCcEEEEEeC----CC-----------cEEEEE
Q 003279 633 FTGHS------------------------------TTVM-SLDFHPSKEDLLCSCDN----NS-----------EIRYWS 666 (834)
Q Consensus 633 ~~~h~------------------------------~~V~-sl~fspdg~~llasgs~----Dg-----------~I~lwD 666 (834)
..... ..+. .+.+.+..+.+++..++ ++ .|.-.|
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 21111 1111 23556654433333222 12 688889
Q ss_pred CCCCceeeEeec-CCC---------eeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEE
Q 003279 667 INNGSCAGVFKC-QSG---------ATQMRFQPRLG---RILAAAIENYISILDVETQVCR 714 (834)
Q Consensus 667 l~s~~~i~~~~~-~~~---------i~~l~~sp~g~---~ll~~s~dg~I~iwDl~t~~~~ 714 (834)
+++|+....+.. +.. ..-+.+..+++ .++.+..+|.++++|.++++.+
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 999999888774 111 12223334555 5668888999999999999876
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0047 Score=66.27 Aligned_cols=216 Identities=13% Similarity=0.131 Sum_probs=125.3
Q ss_pred CCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceee---------
Q 003279 604 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--------- 674 (834)
Q Consensus 604 pdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~--------- 674 (834)
..++.|+.|+.+| |+++++.......... +...|..+...++-+.+++.+ |+.|+++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc--CCccEEEEchhhccccccccccccc
Confidence 3577899999998 9999994333222222 233499999998877666554 5999999987644333
Q ss_pred ------EeecCCCeeEEE--EecCCCEEEEEEcCCeEEEEECCCC-----eEEEEEeCCCCCEEEEEEcCCCCEEEEEeC
Q 003279 675 ------VFKCQSGATQMR--FQPRLGRILAAAIENYISILDVETQ-----VCRLKLQGHKNQVHSVCWNTSGEYLASVSD 741 (834)
Q Consensus 675 ------~~~~~~~i~~l~--~sp~g~~ll~~s~dg~I~iwDl~t~-----~~~~~l~~h~~~I~sl~~spdg~~LasgsD 741 (834)
.+....++...+ -...+...+++.....|.+|..... ....++. -...+.+++|. +..|+.+..
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC
Confidence 122223344444 2234556667777779988887653 3445554 45788899998 667888877
Q ss_pred CeEEEEEcCCCCCceeEEEeecC----------CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeE
Q 003279 742 ELVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVS 810 (834)
Q Consensus 742 g~I~IwDl~s~~~~~~i~~~~~~----------~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~ 810 (834)
+...+.|+.++.. ..+...... ..++..+.+ +++.+|++. +..-.+.|..+.... ....-...+.
T Consensus 157 ~~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~p~ 232 (275)
T PF00780_consen 157 KGFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSAPQ 232 (275)
T ss_pred CceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCCCcCcccEEEcCCchh
Confidence 7799999997643 222211111 122333333 334555432 333334454332221 1111233555
Q ss_pred EEEEeCCCCEEEEEecCCcEEEeC
Q 003279 811 SLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 811 ~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++++. ..||+..+.++ |-||+
T Consensus 233 ~~~~~--~pyli~~~~~~-iEV~~ 253 (275)
T PF00780_consen 233 SVAYS--SPYLIAFSSNS-IEVRS 253 (275)
T ss_pred EEEEE--CCEEEEECCCE-EEEEE
Confidence 66664 45777765544 88774
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0061 Score=69.67 Aligned_cols=221 Identities=12% Similarity=0.076 Sum_probs=126.9
Q ss_pred CeEEEEECCCCCEEEEE-eCCC----eEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC----------C
Q 003279 596 WITDVRFSPSLSRLATS-SADR----TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----------S 660 (834)
Q Consensus 596 ~I~~l~fspdg~~Latg-s~Dg----~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D----------g 660 (834)
.+..++++|++++||.+ +..| .|+++|+.+++.....+.. .....+.|.+++..++++...+ .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 34468899999998865 3333 6999999987643333332 1223499999988888776433 2
Q ss_pred cEEEEECCCCcee--eEeec--CCC-eeEEEEecCCCEEEEEEcC----CeEEEEECCCC-----eEEEEEeCCCCCEEE
Q 003279 661 EIRYWSINNGSCA--GVFKC--QSG-ATQMRFQPRLGRILAAAIE----NYISILDVETQ-----VCRLKLQGHKNQVHS 726 (834)
Q Consensus 661 ~I~lwDl~s~~~i--~~~~~--~~~-i~~l~~sp~g~~ll~~s~d----g~I~iwDl~t~-----~~~~~l~~h~~~I~s 726 (834)
.|++|++.+.... ..+.. ... ...+..+++++++++.... ..+++.|+..+ ..........+....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 4788888776433 34433 223 5678889999998876653 35888999874 333333323333333
Q ss_pred EEEcCCCCEEEEEe----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECC-CCe
Q 003279 727 VCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMT-ENK 798 (834)
Q Consensus 727 l~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg---~I~Iwdl~-~~~ 798 (834)
+... .+.+++.+. .+.|...++...........+..+...+.-..+...+.+|++...++ .|+++++. +..
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 4433 444554443 34788888887653223334455555433344444555666555443 79999999 555
Q ss_pred EEEecc-CCCCeEEEEEeCCCC
Q 003279 799 TLTLSA-HDKLVSSLAASTVNG 819 (834)
Q Consensus 799 ~~~l~~-h~~~V~~lafspdg~ 819 (834)
...+.. -.+.|..+...+++.
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-S
T ss_pred EeeecCCcceEEeccCCCCCCC
Confidence 443332 334455665555554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.85 E-value=5e-06 Score=93.82 Aligned_cols=197 Identities=18% Similarity=0.259 Sum_probs=135.0
Q ss_pred CCeEEEEECCCC--CEEEEEeCCCeEEEEecCCCCce-eeeeccCCCCeEEEEEccCCCcEEEEEe----CCCcEEEEEC
Q 003279 595 QWITDVRFSPSL--SRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWSI 667 (834)
Q Consensus 595 ~~I~~l~fspdg--~~Latgs~Dg~I~IWDl~s~~~~-i~~~~~h~~~V~sl~fspdg~~llasgs----~Dg~I~lwDl 667 (834)
..+.|+++..+. -++++|..+|.|.+-.+...... .....++....++++|.+-...+||+|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 346677766543 46888999999999988765443 4566778899999999987666776663 4668999999
Q ss_pred CCC--ceeeE--ee--cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcC-CCCEEEEE
Q 003279 668 NNG--SCAGV--FK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNT-SGEYLASV 739 (834)
Q Consensus 668 ~s~--~~i~~--~~--~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~-~~~~~l~~h~~~I~sl~~sp-dg~~Lasg 739 (834)
.++ .+... +. ...+..+++|..+.+.+++|.....+.++|++-. .....+ .+..+..+..+| .+.|+++.
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence 876 22221 11 2345678999988888888888999999999833 211111 234567788888 78888888
Q ss_pred eCCeEEEEE-cCCCCCceeEEEeecCC----CceEEEEEeCCCCE-EEEEEcC-CeEEEEECC
Q 003279 740 SDELVRVWS-IGSGSKGECIHELSCTG----NKFHSCVFHPTFPS-LLVIGCY-ETLELWNMT 795 (834)
Q Consensus 740 sDg~I~IwD-l~s~~~~~~i~~~~~~~----~~I~svafspdg~~-L~sgs~d-g~I~Iwdl~ 795 (834)
.|+.|.+|| .++-+ ..+..+.... ..+..++|.|...- +++...| ++|++||+.
T Consensus 215 ~dg~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 SDGDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccCceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 899999999 43332 1222222222 34888999997543 4444444 489999884
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0096 Score=64.92 Aligned_cols=217 Identities=11% Similarity=0.045 Sum_probs=132.1
Q ss_pred EEEECCCCCEE-EEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee
Q 003279 599 DVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 677 (834)
Q Consensus 599 ~l~fspdg~~L-atgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~ 677 (834)
...|.++...| .+--..+.|.-|+..++.. ..+. +...+.++.....+. .|+++ +..+.+++.+++..+..+.
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~~-~p~~~~~~~~~d~~g-~Lv~~--~~g~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKK--RVFP-SPGGFSSGALIDAGG-RLIAC--EHGVRLLDPDTGGKITLLA 102 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCce--EEEE-CCCCcccceeecCCC-eEEEE--ccccEEEeccCCceeEEec
Confidence 34566666644 4444577899999886553 3333 223344544444434 44455 3456777776665533332
Q ss_pred c------CCCeeEEEEecCCCEEEEEEc-----------CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 003279 678 C------QSGATQMRFQPRLGRILAAAI-----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 678 ~------~~~i~~l~~sp~g~~ll~~s~-----------dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs 740 (834)
. ....+.+.+.|+|.+.+.... -|.|+.+|. .+..+..+..+-..-+.|+||||++.|+.+.
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aD 181 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD 181 (307)
T ss_pred cccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEe
Confidence 1 234667888999776665444 134555565 4555666665556667999999998888777
Q ss_pred --CCeEEEEEcCC--CCCc--eeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEE-EeccCCCCeEEE
Q 003279 741 --DELVRVWSIGS--GSKG--ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSAHDKLVSSL 812 (834)
Q Consensus 741 --Dg~I~IwDl~s--~~~~--~~i~~~~~~~~~I~svafspdg~~L~sgs~dg-~I~Iwdl~~~~~~-~l~~h~~~V~~l 812 (834)
.+.|..|++.. +... .....+....+..-.++...+|.+.+++...+ .|.+|+.+ ++.+ .+.-....++++
T Consensus 182 T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~ 260 (307)
T COG3386 182 TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNP 260 (307)
T ss_pred CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccc
Confidence 57888888762 2111 11222333456667788888898665555554 99999999 6666 444444788888
Q ss_pred EEeC-CCCEEEE
Q 003279 813 AAST-VNGMVAS 823 (834)
Q Consensus 813 afsp-dg~~LaS 823 (834)
+|-- +.+.|+.
T Consensus 261 ~FgG~~~~~L~i 272 (307)
T COG3386 261 AFGGPDLNTLYI 272 (307)
T ss_pred eEeCCCcCEEEE
Confidence 8863 4444443
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0038 Score=72.08 Aligned_cols=148 Identities=12% Similarity=0.093 Sum_probs=99.1
Q ss_pred cCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003279 500 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 579 (834)
Q Consensus 500 ~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IW 579 (834)
+..+.+++.|+..+.+.+|.......- .....+-.+.+..++.+++..++|.|+..|.|.|+
T Consensus 42 dst~~~l~~GsS~G~lyl~~R~~~~~~------------------~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ 103 (726)
T KOG3621|consen 42 DATEEYLAMGSSAGSVYLYNRHTGEMR------------------KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVF 103 (726)
T ss_pred ecCCceEEEecccceEEEEecCchhhh------------------cccccCccceEEEEEecchhHhhhhhcCCceEEee
Confidence 455688999999999999865544211 11112234556777889999899999999999999
Q ss_pred eCCCCeE-----EEEe-ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC---ceeeeeccCCCCeEEEEEccCCC
Q 003279 580 CTESFTV-----KSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSKE 650 (834)
Q Consensus 580 d~~t~~~-----~~~l-~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~---~~i~~~~~h~~~V~sl~fspdg~ 650 (834)
-+..... +... ..|...|+|++|++++..|++|...|+|.+-.++... .....+....+.|.-|++.. .
T Consensus 104 ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~ 181 (726)
T KOG3621|consen 104 QLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--S 181 (726)
T ss_pred hhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--c
Confidence 7654221 1111 2478899999999999999999999999998887621 12334444567788887763 3
Q ss_pred cEEEEEeCCCcEEEEECCC
Q 003279 651 DLLCSCDNNSEIRYWSINN 669 (834)
Q Consensus 651 ~llasgs~Dg~I~lwDl~s 669 (834)
++|++.... ..+++++.
T Consensus 182 ~LLVStl~r--~~Lc~tE~ 198 (726)
T KOG3621|consen 182 YLLVSTLTR--CILCQTEA 198 (726)
T ss_pred eehHhhhhh--hheeecch
Confidence 355444332 33445443
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.012 Score=65.17 Aligned_cols=242 Identities=11% Similarity=0.120 Sum_probs=123.4
Q ss_pred eCCCCeEEEEeccCCCCeE-----EEEECCCCCEEEEEeC-CC--eEEEEecCCCCceeeeeccCC-CCeEEEEEccCCC
Q 003279 580 CTESFTVKSTLEEHTQWIT-----DVRFSPSLSRLATSSA-DR--TVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKE 650 (834)
Q Consensus 580 d~~t~~~~~~l~~h~~~I~-----~l~fspdg~~Latgs~-Dg--~I~IWDl~s~~~~i~~~~~h~-~~V~sl~fspdg~ 650 (834)
|..+|..+..+..+..... .=+|.+||+.|+.++. || .+++.|+.+++ +..+.... .......++++++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~--i~QLTdg~g~~~~g~~~s~~~~ 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE--ITQLTDGPGDNTFGGFLSPDDR 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E--EEE---SS-B-TTT-EE-TTSS
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE--EEECccCCCCCccceEEecCCC
Confidence 6778888877765443322 2356778877666554 55 56677777654 45554433 2233566778877
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEeecCCCee-EEEEe--cCCCEEEEEEc----------------------CCeEEE
Q 003279 651 DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQ--PRLGRILAAAI----------------------ENYISI 705 (834)
Q Consensus 651 ~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~-~l~~s--p~g~~ll~~s~----------------------dg~I~i 705 (834)
.+++.. .+..|+..|+.+.+....+..+.... ...|. .++..++..-. ...|..
T Consensus 94 ~~~Yv~-~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 94 ALYYVK-NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp EEEEEE-TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred eEEEEE-CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 665544 45689999999988777777655543 34453 34444333221 124777
Q ss_pred EECCCCeEEEEEeCCCCCEEEEEEcCCC-CEEEEEeCC-----eEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCCC
Q 003279 706 LDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVSDE-----LVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFP 778 (834)
Q Consensus 706 wDl~t~~~~~~l~~h~~~I~sl~~spdg-~~LasgsDg-----~I~IwDl~s~~~-~~~i~~~~~~~~~I~svafspdg~ 778 (834)
.|+.+++....+. ...++..+-|+|.. .+|+.|.+| .-+||-+++... ..+++.- .....+..=-|.+||.
T Consensus 173 idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 173 IDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVPDGS 250 (386)
T ss_dssp EETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS
T ss_pred EECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccCCCC
Confidence 8999887666665 56788999999954 455556644 237777765321 2233222 1233445557999998
Q ss_pred EEEEEEc-----CCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecC
Q 003279 779 SLLVIGC-----YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 779 ~L~sgs~-----dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~D 827 (834)
.|...+. +..|.-+|+.+++...+..- .....+-.++||+++|-=+.|
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCC
Confidence 8776543 33677788888766543222 234566667898887754444
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.072 Score=64.89 Aligned_cols=238 Identities=10% Similarity=-0.007 Sum_probs=123.7
Q ss_pred eEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC------CeEEEEec
Q 003279 555 VESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDT 623 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~D-----g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D------g~I~IWDl 623 (834)
+..+.|+|||++|+.+... ..|++.|+.+++.+...-.... ..++|.+|++.|+....+ ..|+.+++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 6678899999998876432 3688889988864322211211 469999998877665442 36888888
Q ss_pred CCCCc-eeeeeccCCCCeE-EEEEccCCCcEEEEEe--CCCcEEEEECC--CCceeeEeecCCCeeEEEEecCCCEEEEE
Q 003279 624 ENPDY-SLRTFTGHSTTVM-SLDFHPSKEDLLCSCD--NNSEIRYWSIN--NGSCAGVFKCQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 624 ~s~~~-~i~~~~~h~~~V~-sl~fspdg~~llasgs--~Dg~I~lwDl~--s~~~i~~~~~~~~i~~l~~sp~g~~ll~~ 697 (834)
.++.. ....+........ .+..+.++..+++.+. .++.+.+|+.. ++.....+.....+..-..+. +..++..
T Consensus 207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~ 285 (686)
T PRK10115 207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHY-QHRFYLR 285 (686)
T ss_pred CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeC-CCEEEEE
Confidence 87621 1223333233333 3333447776665443 34678898853 344333333333332222233 3445444
Q ss_pred EcC----CeEEEEECCCCeEEEEEeCC-C-CCEEEEEEcCCCCEEEEEe-CCe--EEEEEcCCCCCceeEEEee-cCCCc
Q 003279 698 AIE----NYISILDVETQVCRLKLQGH-K-NQVHSVCWNTSGEYLASVS-DEL--VRVWSIGSGSKGECIHELS-CTGNK 767 (834)
Q Consensus 698 s~d----g~I~iwDl~t~~~~~~l~~h-~-~~I~sl~~spdg~~Lasgs-Dg~--I~IwDl~s~~~~~~i~~~~-~~~~~ 767 (834)
+.. ..|...++........+..+ . ..|..+.+.. +.++++.. ++. +.+++...+ .+..+. .....
T Consensus 286 tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~----~~~~l~~~~~~~ 360 (686)
T PRK10115 286 SNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTR----EVIGIAFDDPAY 360 (686)
T ss_pred EcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCC----ceEEecCCCCce
Confidence 432 24555565522112233334 3 3677888873 33344444 664 555554332 222222 11222
Q ss_pred eEEEEEe--CCCC-EEEEEEcC---CeEEEEECCCCeEE
Q 003279 768 FHSCVFH--PTFP-SLLVIGCY---ETLELWNMTENKTL 800 (834)
Q Consensus 768 I~svafs--pdg~-~L~sgs~d---g~I~Iwdl~~~~~~ 800 (834)
+..+.++ +++. .+++.++. +.++.||+.+++..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~ 399 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERR 399 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEE
Confidence 3333344 4444 34333332 38899998877643
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0054 Score=73.95 Aligned_cols=142 Identities=8% Similarity=0.099 Sum_probs=98.5
Q ss_pred CCEEEEE-eCCCeEEEEecCCCCceeeeeccCCCC-eEEEEEcc-----CCCcEEEEEeCCCcEEEEECCCCc--eee--
Q 003279 606 LSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHP-----SKEDLLCSCDNNSEIRYWSINNGS--CAG-- 674 (834)
Q Consensus 606 g~~Latg-s~Dg~I~IWDl~s~~~~i~~~~~h~~~-V~sl~fsp-----dg~~llasgs~Dg~I~lwDl~s~~--~i~-- 674 (834)
.++|+.. .....|+-.|++.++. +..+..|... |..++-.. +....| .|-.+..|..||.+-.. ++.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKV-V~eW~~~~~~~v~~~~p~~K~aqlt~e~tf-lGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKV-VEEWKVHDDIPVVDIAPDSKFAQLTNEQTF-LGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcE-EEEeecCCCcceeEecccccccccCCCceE-EEECCCceEEeccCCCCCceeecc
Confidence 3444433 3467899999998775 6666666543 55554321 112223 56668899999998632 332
Q ss_pred --EeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcC
Q 003279 675 --VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG 750 (834)
Q Consensus 675 --~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~ 750 (834)
.+.......|++-+.+ ++|++|+.+|.|++||--.......+.+-..+|.+|+.+.||++|++.++..+.+++..
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred ccccccCCCceEEEecCC-ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 2223445667765554 78999999999999995444445556677889999999999999999999989998863
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.027 Score=62.88 Aligned_cols=221 Identities=10% Similarity=0.096 Sum_probs=110.8
Q ss_pred CCCEEEEEe-CCCcEEEEeCCC----CeEEEEecc---CC----CCeEEEEECCCCCEEEEEeC------CCeEEEEecC
Q 003279 563 DGKLLATGG-HDKKAVLWCTES----FTVKSTLEE---HT----QWITDVRFSPSLSRLATSSA------DRTVRVWDTE 624 (834)
Q Consensus 563 dg~~Lasgs-~Dg~I~IWd~~t----~~~~~~l~~---h~----~~I~~l~fspdg~~Latgs~------Dg~I~IWDl~ 624 (834)
+.++|+..+ ..+.|+|+|+.+ -+..++++. +. ..-..+...|+|.+++++-. -|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 778999999873 345555542 11 12234455678888887632 2467777777
Q ss_pred CCCceeeeecc---CCCCeEEEEEccCCCcEEEEEe--------------------CCCcEEEEECCCCceeeEeecCCC
Q 003279 625 NPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCD--------------------NNSEIRYWSINNGSCAGVFKCQSG 681 (834)
Q Consensus 625 s~~~~i~~~~~---h~~~V~sl~fspdg~~llasgs--------------------~Dg~I~lwDl~s~~~i~~~~~~~~ 681 (834)
+... ...... ....-+.+-|.|..+ +++|.. ...++.+||+.+.+.+.++.....
T Consensus 166 tf~v-~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 166 TFEV-KGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp T--E-EEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred cccc-cceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 5432 222222 223456677788654 554543 245899999999999999987532
Q ss_pred ---eeEEEEec--CCCEEEEEEc-CCeEEEEEC-CCC----eEEEEEeCC-----------------CCCEEEEEEcCCC
Q 003279 682 ---ATQMRFQP--RLGRILAAAI-ENYISILDV-ETQ----VCRLKLQGH-----------------KNQVHSVCWNTSG 733 (834)
Q Consensus 682 ---i~~l~~sp--~g~~ll~~s~-dg~I~iwDl-~t~----~~~~~l~~h-----------------~~~I~sl~~spdg 733 (834)
...+.|.. +..+-++++. ...|..|-- +.+ +.+..+... ..-|+.|.+|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 45667654 4445444443 455555433 443 223333211 2457899999999
Q ss_pred CEEEEEe--CCeEEEEEcCCCCCceeEEEeecCC----------------CceEEEEEeCCCCEEEEEEc
Q 003279 734 EYLASVS--DELVRVWSIGSGSKGECIHELSCTG----------------NKFHSCVFHPTFPSLLVIGC 785 (834)
Q Consensus 734 ~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~----------------~~I~svafspdg~~L~sgs~ 785 (834)
++|.++. +|.|+.||+......+.+..+.... +....+.+|.||+.|++.++
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 9999988 9999999999877666665543221 23467889999999888754
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.14 Score=54.01 Aligned_cols=270 Identities=9% Similarity=0.034 Sum_probs=150.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc--CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 630 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~--h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i 630 (834)
+-+..+.++ +++...+..+.-++|.|+.+......+.. -.+--.++.. .|++..++..|.-+.+.|+.++..+.
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 345566676 45788888888999999986544332211 1133344444 57898888877778899998766543
Q ss_pred --eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc---eeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003279 631 --RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 705 (834)
Q Consensus 631 --~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~---~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~i 705 (834)
..+.........++.+ |+ ..+.+..|+-+.+.|+.+.. .+........+.++..+++. .+....+-.+.+
T Consensus 163 lagrya~~~~d~~~v~IS--Gn-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr--~y~vvy~egvli 237 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GN-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNR--AYLVVYDEGVLI 237 (370)
T ss_pred eeeeeccCCCCceeEEEe--cC-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCe--eEEEEcccceEE
Confidence 2333344445677777 33 45566678889999997643 34444445577777777653 444444556777
Q ss_pred EECCCCeEEEEEeC-CCCCEEEE-EEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003279 706 LDVETQVCRLKLQG-HKNQVHSV-CWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 706 wDl~t~~~~~~l~~-h~~~I~sl-~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~s 782 (834)
.|..+.+....+.. .+..+.++ .+.-.+++..... +..+-+.|+.+.........+......-..+... +.++..
T Consensus 238 vd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yi 315 (370)
T COG5276 238 VDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYI 315 (370)
T ss_pred EecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEe
Confidence 77776653333321 12222222 2222455555555 6667777777653322222222222222222222 223333
Q ss_pred EEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 783 IGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 783 gs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+..+ ...+.+....+.. ...+....+.+.+.+-+.+++.+...++.+.||+
T Consensus 316 adkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 316 ADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE 367 (370)
T ss_pred ccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence 3333 3444444433322 1112222344444555566888889999999986
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.19 Score=60.71 Aligned_cols=272 Identities=13% Similarity=0.114 Sum_probs=157.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEE--eCCCCeEEEEe--ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLW--CTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 628 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IW--d~~t~~~~~~l--~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~ 628 (834)
..|.-.+|-.|..+|.++..||.+.-| |..++..-..- .-...++.--.|+..++.-+.+..|.-..+|-.+. +.
T Consensus 584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-kL 662 (1096)
T KOG1897|consen 584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-KL 662 (1096)
T ss_pred hheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-cE
Confidence 346666777778899999999998766 55555443221 22445677777776655555555666666665542 22
Q ss_pred eeeeeccCCCCeEEEE-Ec-cCCCcEEEEEeCCCcEEEEECCCCc--eeeEeecCCCeeEEEEecCCCEEEEEEc-----
Q 003279 629 SLRTFTGHSTTVMSLD-FH-PSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKCQSGATQMRFQPRLGRILAAAI----- 699 (834)
Q Consensus 629 ~i~~~~~h~~~V~sl~-fs-pdg~~llasgs~Dg~I~lwDl~s~~--~i~~~~~~~~i~~l~~sp~g~~ll~~s~----- 699 (834)
....+.- ..+..+| |+ +.....++++. .+.+++..+..-. .++++..+.....+++.+....+.+.+.
T Consensus 663 v~spls~--kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~ 739 (1096)
T KOG1897|consen 663 VYSPLSL--KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESS 739 (1096)
T ss_pred EEeccch--HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccc
Confidence 2221111 1122221 22 12233454554 5567777665422 3344555677777888774344444332
Q ss_pred ------C---CeEEEEECCCCeEEEEEeC-CCC---CEEEEEEcCC-CCEEEEEe-----------CCeEEEEEcCCCCC
Q 003279 700 ------E---NYISILDVETQVCRLKLQG-HKN---QVHSVCWNTS-GEYLASVS-----------DELVRVWSIGSGSK 754 (834)
Q Consensus 700 ------d---g~I~iwDl~t~~~~~~l~~-h~~---~I~sl~~spd-g~~Lasgs-----------Dg~I~IwDl~s~~~ 754 (834)
. ..++++|-++-+.....+- ... .|.++.|..| +.++++|. .|.|.||.+.....
T Consensus 740 ~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~ 819 (1096)
T KOG1897|consen 740 AEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS 819 (1096)
T ss_pred hhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence 1 1467777777655443321 112 3445558776 67777664 25788888877544
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-eccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 755 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 755 ~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~-l~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
.+.+++....+ .+.++..- +|++| ++-...|++|++.+.+.+. -..|..++..+...-.+..++.|.-=+.|.+
T Consensus 820 L~~v~e~~v~G-av~aL~~f-ngkll--A~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 820 LELVAETVVKG-AVYALVEF-NGKLL--AGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred eeeeeeeeecc-ceeehhhh-CCeEE--EecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 45555544433 33333221 34444 4445589999999986664 4467888889988888999999876666544
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.013 Score=69.57 Aligned_cols=208 Identities=13% Similarity=0.127 Sum_probs=115.6
Q ss_pred CCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe------CCC--eEEEEecCCCCceeeeeccCCCCeEEEE
Q 003279 573 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS------ADR--TVRVWDTENPDYSLRTFTGHSTTVMSLD 644 (834)
Q Consensus 573 Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs------~Dg--~I~IWDl~s~~~~i~~~~~h~~~V~sl~ 644 (834)
+|.+.-.+-.....+.-..+....+...+++|+|+.++..- .|. .|.+++.. ........+ ...+.-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g--~~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEG--HSLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecC--CCCCCce
Confidence 56665544332222222223334688999999999887765 244 45555543 222222232 2478889
Q ss_pred EccCCCcEEEEEeC-----------CCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEE---EECCC
Q 003279 645 FHPSKEDLLCSCDN-----------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI---LDVET 710 (834)
Q Consensus 645 fspdg~~llasgs~-----------Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~i---wDl~t 710 (834)
|+|+|..+.+.... .+.+.+.+++.+.... .....|..+.|+|||..+++.. ++.|++ .....
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~ 480 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED 480 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence 99997755544321 2344444555444333 3346799999999999998876 477777 45445
Q ss_pred CeEEE----EEe-CCCCCEEEEEEcCCCCEEEEEeCC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003279 711 QVCRL----KLQ-GHKNQVHSVCWNTSGEYLASVSDE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 711 ~~~~~----~l~-~h~~~I~sl~~spdg~~LasgsDg--~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sg 783 (834)
+.... .+. .-...+.++.|..++.+++...++ .+...++.... .....-......+..++-++. .|++.
T Consensus 481 G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~--~~~~~~~n~~~~v~~vaa~~~--~iyv~ 556 (591)
T PRK13616 481 GQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN--SDALPSRNLSAPVVAVAASPS--TVYVT 556 (591)
T ss_pred CceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcc--ccccCCCCccCceEEEecCCc--eEEEE
Confidence 54111 122 223346889999999976554433 45444554321 111011112445666666653 46666
Q ss_pred EcCCeEEE
Q 003279 784 GCYETLEL 791 (834)
Q Consensus 784 s~dg~I~I 791 (834)
..++.+.+
T Consensus 557 ~~~g~~~l 564 (591)
T PRK13616 557 DARAVLQL 564 (591)
T ss_pred cCCceEEe
Confidence 66664443
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.038 Score=63.06 Aligned_cols=188 Identities=9% Similarity=0.083 Sum_probs=97.2
Q ss_pred eEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC-----CCeeEE-E---E
Q 003279 617 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----SGATQM-R---F 687 (834)
Q Consensus 617 ~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~-----~~i~~l-~---~ 687 (834)
.|.||+..... +..+.-..+.|.++.|+.+. .++ +-..||.+++||+.. +. .+... ..|... . +
T Consensus 62 ~I~iys~sG~l--l~~i~w~~~~iv~~~wt~~e-~Lv-vV~~dG~v~vy~~~G-~~--~fsl~~~i~~~~v~e~~i~~~~ 134 (410)
T PF04841_consen 62 SIQIYSSSGKL--LSSIPWDSGRIVGMGWTDDE-ELV-VVQSDGTVRVYDLFG-EF--QFSLGEEIEEEKVLECRIFAIW 134 (410)
T ss_pred EEEEECCCCCE--eEEEEECCCCEEEEEECCCC-eEE-EEEcCCEEEEEeCCC-ce--eechhhhccccCcccccccccc
Confidence 36666665322 22222222789999998864 355 445699999999973 33 22211 122211 1 1
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCe-EEEEEe---CCCC------CEE-EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc
Q 003279 688 QPRLGRILAAAIENYISILDVETQV-CRLKLQ---GHKN------QVH-SVCWNTSGEYLASVS-DELVRVWSIGSGSKG 755 (834)
Q Consensus 688 sp~g~~ll~~s~dg~I~iwDl~t~~-~~~~l~---~h~~------~I~-sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~ 755 (834)
..+.+ +++...++.|++..--... ....+. .... .+. ...++.+....+... ++.+.+.+-...
T Consensus 135 ~~~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~--- 210 (410)
T PF04841_consen 135 FYKNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF--- 210 (410)
T ss_pred cCCCC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc---
Confidence 12122 4444455555555332221 111111 1000 000 022333444333333 445554443221
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-ec-cCCCCeEEEEEeCCCC
Q 003279 756 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LS-AHDKLVSSLAASTVNG 819 (834)
Q Consensus 756 ~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~-l~-~h~~~V~~lafspdg~ 819 (834)
..+ ...+++..+++||++++|+.-..+|.+.+.+.+-.+.+. +. .-......+.|.-+..
T Consensus 211 ---~~i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 211 ---KQI-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred ---ccc-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 011 124689999999999999999999999998876555542 22 2235666777775543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00047 Score=80.12 Aligned_cols=109 Identities=14% Similarity=0.252 Sum_probs=85.7
Q ss_pred EEEEEccCCCcEEEEEe----CCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003279 641 MSLDFHPSKEDLLCSCD----NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 716 (834)
Q Consensus 641 ~sl~fspdg~~llasgs----~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~ 716 (834)
+-+.|+|... +|++++ ..|.|.|| .++|++-+....+-.++++||+|..-.|+.+-.-|.+.+|...+.+....
T Consensus 19 ti~SWHPseP-lfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEP-LFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCc-eeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 3456888866 554543 45778877 45566666666566788899999876677777779999999988877766
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCC
Q 003279 717 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 751 (834)
Q Consensus 717 l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s 751 (834)
...|+.+|..+.||++|..+.++. -|.|.+|.+.-
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 777999999999999999999999 88999998763
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.051 Score=59.34 Aligned_cols=183 Identities=13% Similarity=0.023 Sum_probs=115.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-----CCCCeEEEEECCCCCEEEEEeC-----C----CeEEE
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSA-----D----RTVRV 620 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~-----h~~~I~~l~fspdg~~Latgs~-----D----g~I~I 620 (834)
+.++..-.++..|+++. ..+.+++.+++..+..+.. .....+++...|+|.+.++... . ..-.|
T Consensus 68 ~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~l 145 (307)
T COG3386 68 FSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSL 145 (307)
T ss_pred cccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceE
Confidence 45555544555666553 3467777766655333321 1245678889999987776544 1 11245
Q ss_pred EecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC--Cce---e-eEee--cCCCeeEEEEecCCC
Q 003279 621 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--GSC---A-GVFK--CQSGATQMRFQPRLG 692 (834)
Q Consensus 621 WDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s--~~~---i-~~~~--~~~~i~~l~~sp~g~ 692 (834)
|.++.....++.+..+-..-+.|+|+||++.++++=+..+.|..|++.. +.. . ..+. ..+..-.++...+|.
T Consensus 146 yr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~ 225 (307)
T COG3386 146 YRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN 225 (307)
T ss_pred EEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC
Confidence 5554223335666666667789999999987776666678899988762 111 1 1111 134456677888888
Q ss_pred EEEEEEcCC-eEEEEECCCCeEEEEEeCCCCCEEEEEEc-CCCCEEEEEe
Q 003279 693 RILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWN-TSGEYLASVS 740 (834)
Q Consensus 693 ~ll~~s~dg-~I~iwDl~t~~~~~~l~~h~~~I~sl~~s-pdg~~Lasgs 740 (834)
+.+++...| .|.+|+.. ++.+..+.-....+++++|- ++.+.|++.+
T Consensus 226 lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 226 LWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 776555554 99999999 88888888776788888884 4555555554
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00064 Score=77.38 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=80.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeE-EEEECCCCCEEEEEeCCCeEEEEecCCCCcee
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSL 630 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~-~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i 630 (834)
.-.|.-+.|+|.-.+||++..+|.|.+..+. ...+.++..|...++ +++|.|||+.||+|-.||+|++.|++++....
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3457889999999999999999999999988 778888887888888 99999999999999999999999999877544
Q ss_pred eeeccCCCCeEEEEEcc
Q 003279 631 RTFTGHSTTVMSLDFHP 647 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fsp 647 (834)
.....-...|.++.|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 43344556788888863
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.036 Score=56.47 Aligned_cols=208 Identities=12% Similarity=0.099 Sum_probs=114.0
Q ss_pred CCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEcc-CC-CcEEEEEeCCCcEEEEECC--CCceeeEee----
Q 003279 606 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SK-EDLLCSCDNNSEIRYWSIN--NGSCAGVFK---- 677 (834)
Q Consensus 606 g~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fsp-dg-~~llasgs~Dg~I~lwDl~--s~~~i~~~~---- 677 (834)
+.++.+--..+.|+-||+.........+.+.. +.++.+-- ++ ..+.+.++..-.|.-||-. .....+++.
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 34444544567777788887554333333221 33333321 21 2345555555566667743 222333211
Q ss_pred --cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC--------CCCEEEEEEcCCCCEEEEEe--CCeEE
Q 003279 678 --CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH--------KNQVHSVCWNTSGEYLASVS--DELVR 745 (834)
Q Consensus 678 --~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h--------~~~I~sl~~spdg~~Lasgs--Dg~I~ 745 (834)
.....+.-..+|+|++ +.|.....-.++....+....-+.+| -..-+.++|+.+.+.+.... +-+|.
T Consensus 105 d~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred hHHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence 1344666778899888 44443211112222222222222222 22335789998877666555 66887
Q ss_pred EEE--cCCCCC--ceeEEEeec----CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeC
Q 003279 746 VWS--IGSGSK--GECIHELSC----TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAST 816 (834)
Q Consensus 746 IwD--l~s~~~--~~~i~~~~~----~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafsp 816 (834)
-|| ..++.. .+.+..++. ..-....+++..+|...+++-..++|..+|..+|+.+ .+.-....|+++||--
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 787 555432 123333332 1112234556677887777777779999999999988 5556688899999974
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.035 Score=58.19 Aligned_cols=231 Identities=12% Similarity=0.096 Sum_probs=140.9
Q ss_pred EEEEEcCCCC-EEEEEeCCCc-EEEEeCCCCeEEEEeccCCCC--eEEEEECCCCCEEEEEeCC-----CeEEEEecCCC
Q 003279 556 ESCHFSPDGK-LLATGGHDKK-AVLWCTESFTVKSTLEEHTQW--ITDVRFSPSLSRLATSSAD-----RTVRVWDTENP 626 (834)
Q Consensus 556 ~sl~fSpdg~-~Lasgs~Dg~-I~IWd~~t~~~~~~l~~h~~~--I~~l~fspdg~~Latgs~D-----g~I~IWDl~s~ 626 (834)
..|+|+|.-. -++.+-.-|+ ..++|........++...++. --.=+|++||.+|+..-.| |.|-|||.+..
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 3578888544 4666666565 467888877766555322221 1124699999999876543 78999999976
Q ss_pred CceeeeeccCCCCeEEEEEccCCCcEEEEEe------C-----------CCcEEEEECCCCceeeEeec-----CCCeeE
Q 003279 627 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD------N-----------NSEIRYWSINNGSCAGVFKC-----QSGATQ 684 (834)
Q Consensus 627 ~~~i~~~~~h~~~V~sl~fspdg~~llasgs------~-----------Dg~I~lwDl~s~~~i~~~~~-----~~~i~~ 684 (834)
-..+-.+..|.-....+.|.+||..+++..+ . .-.+.+.|..+|..+.+... .-.+..
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRH 230 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRH 230 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceee
Confidence 6667778888888889999999987665543 0 11344555555655544433 234677
Q ss_pred EEEecCCCEEEEEEcCCe-----EEEEECCCCeEEEEEeC-------CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcC
Q 003279 685 MRFQPRLGRILAAAIENY-----ISILDVETQVCRLKLQG-------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIG 750 (834)
Q Consensus 685 l~~sp~g~~ll~~s~dg~-----I~iwDl~t~~~~~~l~~-------h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~ 750 (834)
++..+++..++.+-..|- -.+=-...++.+.-+.- ....|-+|+.+.+..+++..+ .+...+||..
T Consensus 231 ld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~ 310 (366)
T COG3490 231 LDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA 310 (366)
T ss_pred eeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC
Confidence 777777665554443331 11111122233322221 224577888887777777777 5589999999
Q ss_pred CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003279 751 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 793 (834)
Q Consensus 751 s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwd 793 (834)
++. .+.... -..++-.-+...-+++.+.+|.+.++.
T Consensus 311 tG~---vv~~a~----l~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 311 TGA---VVSEAA----LPDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred CCc---EEeccc----ccccccceeccCceEEecCCceEEecc
Confidence 983 332211 111222334444577888888888774
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.14 Score=54.04 Aligned_cols=194 Identities=13% Similarity=0.084 Sum_probs=125.9
Q ss_pred eEEEEec-cCCCCeEEEEECCCCCEEEEEeCCC--eEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc
Q 003279 585 TVKSTLE-EHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 661 (834)
Q Consensus 585 ~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg--~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 661 (834)
+.+.++. ......-.+.|..++.++-+.+.-| .|+.+|+.+++............-..++... +.++...-.++.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCe
Confidence 3444543 2233455788877787777777665 7999999988754343333344444555553 456666778999
Q ss_pred EEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC-----CCCEEEEEEcCCCCEE
Q 003279 662 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH-----KNQVHSVCWNTSGEYL 736 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h-----~~~I~sl~~spdg~~L 736 (834)
..+||..+-+.+..+.....-..++ .++..|+.......|+++|.++.+....+.-. -..++-+.|. +|.+.
T Consensus 112 ~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~Iy 188 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIY 188 (264)
T ss_dssp EEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEE
T ss_pred EEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEE
Confidence 9999999999999998877767776 56778888888899999999887666655432 2245667775 56666
Q ss_pred EEEe-CCeEEEEEcCCCCCceeEEEeec---------------CCCceEEEEEeCCCCEEEEEEcC
Q 003279 737 ASVS-DELVRVWSIGSGSKGECIHELSC---------------TGNKFHSCVFHPTFPSLLVIGCY 786 (834)
Q Consensus 737 asgs-Dg~I~IwDl~s~~~~~~i~~~~~---------------~~~~I~svafspdg~~L~sgs~d 786 (834)
|-.- ...|...|..++ .++..+.. .....+.|+++|....|++.+..
T Consensus 189 ANVW~td~I~~Idp~tG---~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 189 ANVWQTDRIVRIDPETG---KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp EEETTSSEEEEEETTT----BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCeEEEEeCCCC---eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 6555 778999999988 44443321 13467999999998888777653
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.026 Score=67.12 Aligned_cols=187 Identities=11% Similarity=0.032 Sum_probs=112.7
Q ss_pred CCCCeEEEEEccCCCcEEEEEe-----CC--CcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcC--------
Q 003279 636 HSTTVMSLDFHPSKEDLLCSCD-----NN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-------- 700 (834)
Q Consensus 636 h~~~V~sl~fspdg~~llasgs-----~D--g~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d-------- 700 (834)
....+.+.+++|++..++++.. .| ..|.+++.. +.. ..+........-.|+|+|+.+++....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEec
Confidence 3346889999999998887762 23 356666653 222 333333458889999998877776533
Q ss_pred ----CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEE---EEcCCCCCcee--EEEeec-CCCceEE
Q 003279 701 ----NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRV---WSIGSGSKGEC--IHELSC-TGNKFHS 770 (834)
Q Consensus 701 ----g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~I---wDl~s~~~~~~--i~~~~~-~~~~I~s 770 (834)
+.+.+.+++.+.... .....|..+.|||||..|+...++.|+| -....+. ... ...+.. ....+..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVS 501 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEeecccCCcccc
Confidence 234444444433322 2356799999999999999888888887 3333332 111 112222 2334688
Q ss_pred EEEeCCCCEEEEEEcCC--eEEEEECCCCeEEEecc--CCCCeEEEEEeCCCCEEEEEecCCcEE
Q 003279 771 CVFHPTFPSLLVIGCYE--TLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDKCVK 831 (834)
Q Consensus 771 vafspdg~~L~sgs~dg--~I~Iwdl~~~~~~~l~~--h~~~V~~lafspdg~~LaSgs~DG~I~ 831 (834)
+.|..++.. +++..++ .++..++.......+.. ....+.+|+-+++ .|+....+|.+.
T Consensus 502 l~W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 502 LDWRTGDSL-VVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred ceEecCCEE-EEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 999999984 4555544 45555665443322222 3567777877763 355556666543
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.015 Score=69.12 Aligned_cols=230 Identities=12% Similarity=0.075 Sum_probs=120.8
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCeEEEEecc-CCCCeEEEEECCCCCEEEEEeCC------CeEEEEecCCCCce
Q 003279 563 DGKLLATGGHD------KKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYS 629 (834)
Q Consensus 563 dg~~Lasgs~D------g~I~IWd~~t~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~D------g~I~IWDl~s~~~~ 629 (834)
.+.+++.||.+ ..|..||..+..-.....- +...-.++++. ++.+.++|+.| .++..||..++.+.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 34456666665 3677888777643322211 22223344444 45788889888 36788888876642
Q ss_pred eeeeccCCCCeEEEEEccCCCcEEEEEeCCC-----cEEEEECCCCceeeEeecCCCeeEEEE-ecCCCEEEEEEcCC--
Q 003279 630 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSGATQMRF-QPRLGRILAAAIEN-- 701 (834)
Q Consensus 630 i~~~~~h~~~V~sl~fspdg~~llasgs~Dg-----~I~lwDl~s~~~i~~~~~~~~i~~l~~-sp~g~~ll~~s~dg-- 701 (834)
. ...-...-..+....-+..+.++|+.|| +|..||..+.+....-........... .-++...++|+.++
T Consensus 363 ~--~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 363 P--VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred c--cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence 2 2221111222222222356888888886 577888877664443332222222222 33456666676543
Q ss_pred ----eEEEEECCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEe-CC-----eEEEEEcCCCCCceeEEEeecCCCceE
Q 003279 702 ----YISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGNKFH 769 (834)
Q Consensus 702 ----~I~iwDl~t~~~~~--~l~~h~~~I~sl~~spdg~~Lasgs-Dg-----~I~IwDl~s~~~~~~i~~~~~~~~~I~ 769 (834)
.+..||..+..-.. .+....... .++. -++.+++.|+ |+ +|..||..+..- ..+.........+.
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W-~~v~~m~~~rs~~g 517 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQW-TMVAPMTSPRSAVG 517 (571)
T ss_pred cccceEEEEcCCCCceeecCCcccccccc-eEEE-ECCEEEEECCccCCCccceEEEEcCCCCce-eEcccCcccccccc
Confidence 57888888764332 222111111 2332 2566666666 55 478888877621 12211221122111
Q ss_pred EEEEeCCCCEEEEEEcCC-----eEEEEECCCCeEE
Q 003279 770 SCVFHPTFPSLLVIGCYE-----TLELWNMTENKTL 800 (834)
Q Consensus 770 svafspdg~~L~sgs~dg-----~I~Iwdl~~~~~~ 800 (834)
...-++...++|+.|+ +|..||..+.+..
T Consensus 518 --~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 518 --VVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred --EEEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 1222455566777666 6888888777655
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.29 Score=59.75 Aligned_cols=200 Identities=9% Similarity=0.018 Sum_probs=107.9
Q ss_pred CCeEEEEECCCCCEEEEEeCC-----CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC-----CcEEE
Q 003279 595 QWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRY 664 (834)
Q Consensus 595 ~~I~~l~fspdg~~Latgs~D-----g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~l 664 (834)
-.+..+.|+||+++|+.+... ..|++.|+.++......+.+- -..++|.+|++.++++...+ ..|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 346778999999988876432 368899998765322222221 14699999998888776533 37888
Q ss_pred EECCCC--ceeeEeecCCC-ee-EEEEecCCCEEEEEEc---CCeEEEEECC--CCeEEEEEeCCCCCEEEEEEcCCCCE
Q 003279 665 WSINNG--SCAGVFKCQSG-AT-QMRFQPRLGRILAAAI---ENYISILDVE--TQVCRLKLQGHKNQVHSVCWNTSGEY 735 (834)
Q Consensus 665 wDl~s~--~~i~~~~~~~~-i~-~l~~sp~g~~ll~~s~---dg~I~iwDl~--t~~~~~~l~~h~~~I~sl~~spdg~~ 735 (834)
+++.++ +....+..... .. .+..+.++++++..+. ++.+.+|+.. ++.....+.........+. +..+.+
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence 899887 44444443222 32 2333447777776554 3578888853 3332222222222223332 333333
Q ss_pred EEEEe-CC---eEEEEEcCCCCCceeEEEeecC--CCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCeEEEe
Q 003279 736 LASVS-DE---LVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTL 802 (834)
Q Consensus 736 Lasgs-Dg---~I~IwDl~s~~~~~~i~~~~~~--~~~I~svafspdg~~L~sgs~dg--~I~Iwdl~~~~~~~l 802 (834)
++... +. .|...++.... .. ..+..+ ...+..+.+..+ ..+++...++ .|++++..++....+
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~--~~-~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~~~~~~~~l 353 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQ--QW-EELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINRKTREVIGI 353 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcc--cC-eEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence 33333 22 34444554211 11 222233 346777777733 3344444455 566667655554443
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.019 Score=69.39 Aligned_cols=138 Identities=12% Similarity=0.088 Sum_probs=98.8
Q ss_pred EEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecC-------CCEEEEEEcCCeEEEEECCCC--eEEEE-E--eCC
Q 003279 653 LCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR-------LGRILAAAIENYISILDVETQ--VCRLK-L--QGH 720 (834)
Q Consensus 653 lasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~-------g~~ll~~s~dg~I~iwDl~t~--~~~~~-l--~~h 720 (834)
|........|+-.|++.|+.+..+..+..+.-..+.|+ ....++|-.++.|..||.+-. +++.. . ...
T Consensus 497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~ 576 (794)
T PF08553_consen 497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS 576 (794)
T ss_pred eecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccccc
Confidence 33334567899999999999999998776656666664 345688888999999999853 23311 1 124
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 721 KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 721 ~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
.....|++-+.+|.++++..+|.||+||-- +. .....+.+-+.+|..|..+.||++|++.+. ..|.+++.
T Consensus 577 ~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~--~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 577 KNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GK--RAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred CCCceEEEecCCceEEEEeCCCcEEeeccc-ch--hhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 456788888888765554449999999943 21 344456677899999999999998776554 46777765
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.17 E-value=1 Score=54.65 Aligned_cols=271 Identities=11% Similarity=0.072 Sum_probs=151.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCC--CCEEEEEeCCCeEEEEecCCCC-c
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPD-Y 628 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~s~~-~ 628 (834)
+.++.--.|+..++.-+.+..|.-..+|... ++.+.+--.-+..-.-+.|+.+ ...|+++. .+.+++.-++.-. .
T Consensus 629 t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl 706 (1096)
T KOG1897|consen 629 TQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKL 706 (1096)
T ss_pred CCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhc
Confidence 3445555666655544445556666666533 3333221111111112223322 33455553 4457777665422 2
Q ss_pred eeeeeccCCCCeEEEEEccCCCcEEEEEeC-----------C---CcEEEEECCCCceeeEeecC-----CCeeEEEEec
Q 003279 629 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----------N---SEIRYWSINNGSCAGVFKCQ-----SGATQMRFQP 689 (834)
Q Consensus 629 ~i~~~~~h~~~V~sl~fspdg~~llasgs~-----------D---g~I~lwDl~s~~~i~~~~~~-----~~i~~l~~sp 689 (834)
.+++.. -......+++.+... ++++.+. . ..++++|-++-+.+...... ..+.++.|..
T Consensus 707 ~irtvp-l~~~prrI~~q~~sl-~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~ 784 (1096)
T KOG1897|consen 707 HIRTVP-LGESPRRICYQESSL-TFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTD 784 (1096)
T ss_pred ceeeec-CCCChhheEecccce-EEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecC
Confidence 234433 334566777776433 3333321 1 14667777766655444331 2244555877
Q ss_pred C-CCEEEEEEc----------CCeEEEEECCCCeEEEEEeC--CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCce
Q 003279 690 R-LGRILAAAI----------ENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE 756 (834)
Q Consensus 690 ~-g~~ll~~s~----------dg~I~iwDl~t~~~~~~l~~--h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~ 756 (834)
| +.++++|+. .|.|.+|.......+..... -.+.+.++..- +|++|| +-...|++|++.+. +
T Consensus 785 d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA-~In~~vrLye~t~~---~ 859 (1096)
T KOG1897|consen 785 DPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLA-GINQSVRLYEWTTE---R 859 (1096)
T ss_pred CCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEE-ecCcEEEEEEcccc---c
Confidence 7 666777664 47888888776333222221 23444444432 455444 45778999999887 4
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE--EECCCCeEE--EeccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 757 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 757 ~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~I--wdl~~~~~~--~l~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
.++.-..+...+..+.+.-.+..|++|..-+.|.+ |+-..|... .-..+..+++++.+-.+..++ .+..+|.+.+
T Consensus 860 eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~yl-gae~~gNlf~ 938 (1096)
T KOG1897|consen 860 ELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYL-GAENSGNLFT 938 (1096)
T ss_pred eehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEE-eecccccEEE
Confidence 55555667788899999999999999998886555 444554454 344678888998886655444 4456666654
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.45 Score=52.82 Aligned_cols=269 Identities=8% Similarity=-0.009 Sum_probs=132.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe----ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 627 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l----~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~ 627 (834)
...+.+|+|..+..-+|+|. ++.|..= .+.++.-... ......+.++.|..+ ..+++ +..+.|. ...++.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~il~T-~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~--~S~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTLLET-NDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLL--HTTDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEEEEE-cCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEE--EECCCC
Confidence 55799999986666666664 4543321 1222222111 112334778888653 34444 4555433 333322
Q ss_pred ceeeeec---cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee--cCCCeeEEEEecCCCEEEEEEcCCe
Q 003279 628 YSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENY 702 (834)
Q Consensus 628 ~~i~~~~---~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~--~~~~i~~l~~sp~g~~ll~~s~dg~ 702 (834)
....... ........+..... ..++++ +..|.|..= .+.|+.=..+. ....+..+.+.+++. +++.+..|.
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~~-~~~~~~-g~~G~i~~S-~DgG~tW~~~~~~~~g~~~~i~~~~~g~-~v~~g~~G~ 194 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALGP-GTAEMA-TNVGAIYRT-TDGGKNWEALVEDAAGVVRNLRRSPDGK-YVAVSSRGN 194 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEECC-Ccceee-eccceEEEE-CCCCCCceeCcCCCcceEEEEEECCCCe-EEEEeCCce
Confidence 2122211 01111222222222 223333 334433221 12222111111 134578888888764 445555565
Q ss_pred EEEE-ECCCCeEEEE-EeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEe-ecCCCceEEEEEeCCCCE
Q 003279 703 ISIL-DVETQVCRLK-LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPS 779 (834)
Q Consensus 703 I~iw-Dl~t~~~~~~-l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~-~~~~~~I~svafspdg~~ 779 (834)
+..- |- .++.-.. .......++++.+.+++..++++..|.+++=....+.....+..- ......+..+.+.+++.
T Consensus 195 i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~- 272 (334)
T PRK13684 195 FYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE- 272 (334)
T ss_pred EEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-
Confidence 5432 22 1221111 223456789999999999888877886653234444222211110 11234577889998876
Q ss_pred EEEEEcCCeEEEEECCCCeEE-Ee---ccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 780 LLVIGCYETLELWNMTENKTL-TL---SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 780 L~sgs~dg~I~Iwdl~~~~~~-~l---~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+++++.+|.|.. ....++.- .. ..-......+.|..+++.++ .+..|.|.-|+
T Consensus 273 ~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 273 IWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred EEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 556666776553 44444432 22 12234577888877766655 45678776653
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.021 Score=67.77 Aligned_cols=208 Identities=11% Similarity=0.042 Sum_probs=109.1
Q ss_pred CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC------CcEEEEECCCCceeeEeecCCCeeEEEE-e
Q 003279 616 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSGATQMRF-Q 688 (834)
Q Consensus 616 g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D------g~I~lwDl~s~~~i~~~~~~~~i~~l~~-s 688 (834)
..|..||..++.+....-........++++.. +.++++|+.| ..+..||..+++....-.....-..... .
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~ 378 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV 378 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE
Confidence 35777777765432222222333344555553 3578888888 3678889887774442222222111111 2
Q ss_pred cCCCEEEEEEcCC-----eEEEEECCCCeEEEEEeCCCCCEEEE-EEcCCCCEEEEEe-CC------eEEEEEcCCCCCc
Q 003279 689 PRLGRILAAAIEN-----YISILDVETQVCRLKLQGHKNQVHSV-CWNTSGEYLASVS-DE------LVRVWSIGSGSKG 755 (834)
Q Consensus 689 p~g~~ll~~s~dg-----~I~iwDl~t~~~~~~l~~h~~~I~sl-~~spdg~~Lasgs-Dg------~I~IwDl~s~~~~ 755 (834)
-+|...++|+.|| .|..||.++.+-...-. ......+. ...-+|.+.++|+ ++ .+..||..++.-
T Consensus 379 l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W- 456 (571)
T KOG4441|consen 379 LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW- 456 (571)
T ss_pred ECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce-
Confidence 2456677777775 58888887653222111 11122222 1223577677666 43 678888877621
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCeEEEeccCCCCeEEEEE-eCCCCEEEEEecCCc
Q 003279 756 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAHDKLVSSLAA-STVNGMVASASHDKC 829 (834)
Q Consensus 756 ~~i~~~~~~~~~I~svafspdg~~L~sgs~dg-----~I~Iwdl~~~~~~~l~~h~~~V~~laf-spdg~~LaSgs~DG~ 829 (834)
..+........... +..-++...++||.|+ +|..||..+.+...+..-......+.. .-++.+.++|+.||.
T Consensus 457 ~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 457 TLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGN 534 (571)
T ss_pred eecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCc
Confidence 12222221112222 2233455566666665 588999998887755433222222221 224677788888874
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.04 Score=65.48 Aligned_cols=217 Identities=8% Similarity=0.014 Sum_probs=108.1
Q ss_pred cEEEEeCCCCeEEE--EeccCCCCeEEEEECCCCCEEEEEeCC------CeEEEEecCCCCceee-eeccCCCCeEEEEE
Q 003279 575 KAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYSLR-TFTGHSTTVMSLDF 645 (834)
Q Consensus 575 ~I~IWd~~t~~~~~--~l~~h~~~I~~l~fspdg~~Latgs~D------g~I~IWDl~s~~~~i~-~~~~h~~~V~sl~f 645 (834)
.+..||..+.+-.. .+...... .+++. -++.+++.|+.+ ..+..||..+..+... ......... +++.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE
Confidence 56778877654332 22111111 12222 256677777754 3578888877553111 111111111 2222
Q ss_pred ccCCCcEEEEEeCCC-----cEEEEECCCCceeeEeecCCCe--eEEEEecCCCEEEEEEcC------------------
Q 003279 646 HPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAAAIE------------------ 700 (834)
Q Consensus 646 spdg~~llasgs~Dg-----~I~lwDl~s~~~i~~~~~~~~i--~~l~~sp~g~~ll~~s~d------------------ 700 (834)
. ++.+.+.|+.++ .+..||..+.+....-...... .+++ .-++..+++|+.+
T Consensus 350 ~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 350 I--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred E--CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE-EECCEEEEEeCCCcccccccccccccccccc
Confidence 2 245777777654 4888998876544322221111 1122 2345666666654
Q ss_pred -----CeEEEEECCCCeEE--EEEeCCCCCEEEEEEcCCCCEEEEEe-C------CeEEEEEcCCCCCceeEEEeecCCC
Q 003279 701 -----NYISILDVETQVCR--LKLQGHKNQVHSVCWNTSGEYLASVS-D------ELVRVWSIGSGSKGECIHELSCTGN 766 (834)
Q Consensus 701 -----g~I~iwDl~t~~~~--~~l~~h~~~I~sl~~spdg~~Lasgs-D------g~I~IwDl~s~~~~~~i~~~~~~~~ 766 (834)
..+..||.++.+-. ..+...... .+++ .-++++.+.|+ + ..+..||..+......+..+.....
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCccccc-CcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 24778888765322 222111111 1222 22466666665 3 2467898887212233333333333
Q ss_pred ceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCeEEE
Q 003279 767 KFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLT 801 (834)
Q Consensus 767 ~I~svafspdg~~L~sgs~dg--~I~Iwdl~~~~~~~ 801 (834)
....+++ ++...++|+.++ .+..||..+.+...
T Consensus 505 ~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 505 ALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNH 539 (557)
T ss_pred cceeEEE--CCEEEEEeeecceeehhhcCcccccccc
Confidence 3333333 667777888787 78889988877653
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.11 Score=59.54 Aligned_cols=145 Identities=11% Similarity=0.103 Sum_probs=93.0
Q ss_pred CCeEEEEEcCC----CCEEEEEeCCCcEEEEeCC-----CCeEEEEec-cC--CCC--eEEEEECCCCCEEEEEeCCCeE
Q 003279 553 SKVESCHFSPD----GKLLATGGHDKKAVLWCTE-----SFTVKSTLE-EH--TQW--ITDVRFSPSLSRLATSSADRTV 618 (834)
Q Consensus 553 ~~V~sl~fSpd----g~~Lasgs~Dg~I~IWd~~-----t~~~~~~l~-~h--~~~--I~~l~fspdg~~Latgs~Dg~I 618 (834)
..|..++|.|- ...|+.....+.|.||-+. ..+.+..-. .. .-+ -..+.|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 34899999984 3345556677899999764 223322111 11 111 2367899998888877666665
Q ss_pred EEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-----eeeEeecCCCeeEEEEecCCCE
Q 003279 619 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-----CAGVFKCQSGATQMRFQPRLGR 693 (834)
Q Consensus 619 ~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~-----~i~~~~~~~~i~~l~~sp~g~~ 693 (834)
.++++......++.-....+.|.|.+|..||.+++++.+..=.-++||-.... .-..|...+.|.++.-.-+ ..
T Consensus 137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d-sq 215 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD-SQ 215 (671)
T ss_pred EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc-ce
Confidence 67777655544544445678899999999999999888777788899865432 2234444566666655543 33
Q ss_pred EEEEE
Q 003279 694 ILAAA 698 (834)
Q Consensus 694 ll~~s 698 (834)
+++++
T Consensus 216 VAvaT 220 (671)
T PF15390_consen 216 VAVAT 220 (671)
T ss_pred EEEEe
Confidence 44444
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.18 Score=53.68 Aligned_cols=187 Identities=9% Similarity=0.018 Sum_probs=107.8
Q ss_pred CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEE-CCCCeE-EEE
Q 003279 639 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD-VETQVC-RLK 716 (834)
Q Consensus 639 ~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwD-l~t~~~-~~~ 716 (834)
.+.+.++++++..+.+....++.-.+|-...+...........+....|++++...++...+....++. ...+.. ...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 688999999998777776334433344333343333333445788889999966666666566666663 333322 222
Q ss_pred EeC--CCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCc------eeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003279 717 LQG--HKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKG------ECIHELSCTGNKFHSCVFHPTFPSLLVIG 784 (834)
Q Consensus 717 l~~--h~~~I~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~------~~i~~~~~~~~~I~svafspdg~~L~sgs 784 (834)
+.. -...|+.+.+||||..++... ++.|.|--+...... ..+.........+..+.|.+++.+++.+.
T Consensus 105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence 221 112899999999999888766 567777766533222 11222223356889999999998777666
Q ss_pred cCC-eEEE-EECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEe
Q 003279 785 CYE-TLEL-WNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 785 ~dg-~I~I-wdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs 825 (834)
..+ .+.. +....+....+..-...+..++...+...++..+
T Consensus 185 ~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t~ 227 (253)
T PF10647_consen 185 SAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYVTD 227 (253)
T ss_pred CCCCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEEEC
Confidence 554 2333 4554444433322233333344434444444433
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0011 Score=46.86 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhcCCC
Q 003279 9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVS 39 (834)
Q Consensus 9 ~~~L~~yiy~yl~k~~~~~~A~~~~~e~~~~ 39 (834)
+..|+..|++||.++|+.++|++|.+|.++.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 4578999999999999999999999998875
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.64 Score=50.62 Aligned_cols=268 Identities=9% Similarity=0.069 Sum_probs=122.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe--ccC---CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEH---TQWITDVRFSPSLSRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l--~~h---~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~ 626 (834)
...+.+|.|..+..-+|+|. .+.|. -..+.|+.-... ... .-...+|.|..+ ..+++ +..+.| +...+ +
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~il-~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g~l-l~T~D-g 89 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTIL-KTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPGLL-LHTTD-G 89 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEEE-EESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETTEE-EEESS-T
T ss_pred CCceEEEEEecCCEEEEEec-CCEEE-EECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCceE-EEecC-C
Confidence 44799999996665666664 45432 222222221111 111 123667777643 34444 445532 22223 2
Q ss_pred Cceeeeec---cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeE--eecCCCeeEEEEecCCCEEEEEEcCC
Q 003279 627 DYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV--FKCQSGATQMRFQPRLGRILAAAIEN 701 (834)
Q Consensus 627 ~~~i~~~~---~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~--~~~~~~i~~l~~sp~g~~ll~~s~dg 701 (834)
......+. .-.+....+....++ ..++ .+..|.|+. ..+.|+.=.. ......+..+..++++.+++++....
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l-~~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~ 166 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALGDG-SAEL-AGDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGN 166 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEETT-EEEE-EETT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSS
T ss_pred CCCcEEeecCCCCCCCeeEEEEcCCC-cEEE-EcCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECccc
Confidence 22222221 122333444444333 2332 333454332 2222322111 12235577888889988777776666
Q ss_pred eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEE----eecCCCceEEEEEeCCC
Q 003279 702 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE----LSCTGNKFHSCVFHPTF 777 (834)
Q Consensus 702 ~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~----~~~~~~~I~svafspdg 777 (834)
.+.-||--...-...-......|.++.|+|++.+.+++..+.|++=+..... ..... +......+..++|.+++
T Consensus 167 ~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~--~~w~~~~~~~~~~~~~~ld~a~~~~~ 244 (302)
T PF14870_consen 167 FYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDG--ETWSEPIIPIKTNGYGILDLAYRPPN 244 (302)
T ss_dssp EEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEE--EEE---B-TTSS--S-EEEEEESSSS
T ss_pred EEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCc--cccccccCCcccCceeeEEEEecCCC
Confidence 6677876533222222224678999999999998887778888887722110 11111 22234457899999887
Q ss_pred CEEEEEEcCCeEEEEECCCCeEE-E---eccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 778 PSLLVIGCYETLELWNMTENKTL-T---LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 778 ~~L~sgs~dg~I~Iwdl~~~~~~-~---l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
. +.+++..|.| +...+.|+.- + .......+..|.|..+.+-+|. +.||.|--|
T Consensus 245 ~-~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 245 E-IWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp --EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred C-EEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 6 4455555644 3455555433 2 1233567888988766555554 578877655
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0019 Score=44.77 Aligned_cols=37 Identities=38% Similarity=0.592 Sum_probs=33.3
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 003279 544 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 580 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd 580 (834)
.+..+..|...|.++.|++++.++++++.|+.|++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4566678999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.95 E-value=1.1 Score=51.05 Aligned_cols=261 Identities=13% Similarity=0.124 Sum_probs=143.3
Q ss_pred CCEEEEEeCCCcEEEEeCCCCe-----EEEEeccCCCCeEEEEECC----CCCEEEEEeCCCeEEEEecCCCC-------
Q 003279 564 GKLLATGGHDKKAVLWCTESFT-----VKSTLEEHTQWITDVRFSP----SLSRLATSSADRTVRVWDTENPD------- 627 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~-----~~~~l~~h~~~I~~l~fsp----dg~~Latgs~Dg~I~IWDl~s~~------- 627 (834)
...|++|+.+|.++||+..... .+.. ..-..+|..+..-+ .....++.=.-..+.||.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 4589999999999999875432 1111 23456788777643 12223333466778888873211
Q ss_pred -ceeeeeccCC--CCeEEEEEcc----CCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcC
Q 003279 628 -YSLRTFTGHS--TTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 628 -~~i~~~~~h~--~~V~sl~fsp----dg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d 700 (834)
..+.....|. .....+++-| .+..++++-+.||.+.+|+-+.-.....+..---...++|.+....|++++.+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence 2233333333 2233344333 23578889999999999998765544444432334567888888899999998
Q ss_pred CeEEEEECCCC--------------------e---EEEEEeCCCCCEEE---EEEcCCCCEEEEEeCCeEEEEEcCCCCC
Q 003279 701 NYISILDVETQ--------------------V---CRLKLQGHKNQVHS---VCWNTSGEYLASVSDELVRVWSIGSGSK 754 (834)
Q Consensus 701 g~I~iwDl~t~--------------------~---~~~~l~~h~~~I~s---l~~spdg~~LasgsDg~I~IwDl~s~~~ 754 (834)
..|..|....- + +..++. -...+.. +.++.....+++-++..+.+.+-. | .
T Consensus 196 ~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G-~ 272 (418)
T PF14727_consen 196 WTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLGERSLFCLKDN-G-S 272 (418)
T ss_pred eeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEecceEEEEcCC-C-e
Confidence 88888864210 0 011111 1122333 333334445566666677777653 2 2
Q ss_pred ceeEEEeecCCCceEEEEEeC----CC---CEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEE---EeCCCCEEEEE
Q 003279 755 GECIHELSCTGNKFHSCVFHP----TF---PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLA---ASTVNGMVASA 824 (834)
Q Consensus 755 ~~~i~~~~~~~~~I~svafsp----dg---~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~la---fspdg~~LaSg 824 (834)
.+....+.. .+...+.|.. ++ ..+++++.++.+.||.=.+-..-.- ......++. |..-...|++-
T Consensus 273 l~~~krLd~--~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~--l~~~PVal~v~~~~~~~G~IV~L 348 (418)
T PF14727_consen 273 LRFQKRLDY--NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQ--LPHVPVALSVANFNGLKGLIVSL 348 (418)
T ss_pred EEEEEecCC--ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecC--CCCCCEEEEecccCCCCceEEEE
Confidence 233333322 2222222221 22 2488899999999986333222111 111222332 22334578888
Q ss_pred ecCCcEEE
Q 003279 825 SHDKCVKI 832 (834)
Q Consensus 825 s~DG~I~I 832 (834)
+.||.|.+
T Consensus 349 s~~G~L~v 356 (418)
T PF14727_consen 349 SDEGQLSV 356 (418)
T ss_pred cCCCcEEE
Confidence 88888765
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.68 Score=49.02 Aligned_cols=179 Identities=9% Similarity=0.026 Sum_probs=108.8
Q ss_pred CCeEEEEEccCCCcEEEEEeCCC--cEEEEECCCCceeeEeecCCCe--eEEEEecCCCEEEEEE-cCCeEEEEECCCCe
Q 003279 638 TTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAAA-IENYISILDVETQV 712 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs~Dg--~I~lwDl~s~~~i~~~~~~~~i--~~l~~sp~g~~ll~~s-~dg~I~iwDl~t~~ 712 (834)
.....+.|..++ .++-+++.-| .|+.+|+.+++.......+... ..++.. ++.|+.-+ .++...+||.++.+
T Consensus 45 aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 45 AFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp -EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce
Confidence 445678886554 4666766655 7999999999988877765543 334444 34455444 47899999999998
Q ss_pred EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC---CceEEEEEeCCCCEEEEEEcCCe
Q 003279 713 CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---NKFHSCVFHPTFPSLLVIGCYET 788 (834)
Q Consensus 713 ~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~---~~I~svafspdg~~L~sgs~dg~ 788 (834)
.+.++. ....=..++ .|+..|+.+. ...|+++|..+......+... ... ..++.+.|. +|...+=.-....
T Consensus 122 ~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~-~~g~pv~~LNELE~i-~G~IyANVW~td~ 196 (264)
T PF05096_consen 122 KIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT-DNGRPVSNLNELEYI-NGKIYANVWQTDR 196 (264)
T ss_dssp EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E-ETTEE---EEEEEEE-TTEEEEEETTSSE
T ss_pred EEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE-ECCEECCCcEeEEEE-cCEEEEEeCCCCe
Confidence 888876 344556777 3455555544 778999998776432322222 222 234556665 4544444445668
Q ss_pred EEEEECCCCeEEEec-------------cC---CCCeEEEEEeCCCCEE-EEE
Q 003279 789 LELWNMTENKTLTLS-------------AH---DKLVSSLAASTVNGMV-ASA 824 (834)
Q Consensus 789 I~Iwdl~~~~~~~l~-------------~h---~~~V~~lafspdg~~L-aSg 824 (834)
|...|..+|+++... .+ ....+.|+|.|....| +||
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 999999999987321 01 3568999999877654 454
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.07 Score=55.96 Aligned_cols=169 Identities=15% Similarity=0.139 Sum_probs=113.5
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEE-cCC-eEEEEECCCCeEEEEEeCCCC-
Q 003279 646 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IEN-YISILDVETQVCRLKLQGHKN- 722 (834)
Q Consensus 646 spdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s-~dg-~I~iwDl~t~~~~~~l~~h~~- 722 (834)
..|+.+.+++.+.+ |+++...........+.++|....-++-. .-| ...+||.........+...+.
T Consensus 44 ~~dgs~g~a~~~ea----------Gk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~R 113 (366)
T COG3490 44 ARDGSFGAATLSEA----------GKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGR 113 (366)
T ss_pred ccCCceeEEEEccC----------CceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCc
Confidence 34555555555544 55566666667778888998765544433 334 577899988765554433222
Q ss_pred -CEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---------
Q 003279 723 -QVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY--------- 786 (834)
Q Consensus 723 -~I~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d--------- 786 (834)
..-.=+||+||.+|+... | |.|-|||.+.+ ...+-++..+.-....+.|.+||+.++++...
T Consensus 114 HfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR 191 (366)
T COG3490 114 HFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGR 191 (366)
T ss_pred eeecccccCCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCc
Confidence 122347999999999875 2 48999999854 46777888898889999999999988876541
Q ss_pred ---------CeEEEEECCCCeEE---Eec--cCCCCeEEEEEeCCCCEEEEEec
Q 003279 787 ---------ETLELWNMTENKTL---TLS--AHDKLVSSLAASTVNGMVASASH 826 (834)
Q Consensus 787 ---------g~I~Iwdl~~~~~~---~l~--~h~~~V~~lafspdg~~LaSgs~ 826 (834)
-++.+.|..++.++ ++. .+.-.|..++..+||..++.|-.
T Consensus 192 ~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 192 TELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred cccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence 13455565556554 222 34567889999999887776644
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.003 Score=43.79 Aligned_cols=39 Identities=41% Similarity=0.578 Sum_probs=34.5
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
++.+..+..|...|.++.|.+++.++++++.|+.|++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355667778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.032 Score=50.80 Aligned_cols=101 Identities=21% Similarity=0.227 Sum_probs=67.8
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee
Q 003279 555 VESCHFSP---DG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 630 (834)
Q Consensus 555 V~sl~fSp---dg-~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i 630 (834)
|+++++.. || +.|++|+.|..|+||+-+ ..+..+..+ +.|++++-... ..|+.+..+|+|-+|+-....+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlW-- 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLW-- 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCcceee--
Confidence 56666554 43 479999999999999854 566666544 56777777665 6799999999999998754332
Q ss_pred eeeccCCCCeEEEEEc---cCCCcEEEEEeCCCcEE
Q 003279 631 RTFTGHSTTVMSLDFH---PSKEDLLCSCDNNSEIR 663 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fs---pdg~~llasgs~Dg~I~ 663 (834)
+.-. ...++++++. -+|..-|++|-.+|.|-
T Consensus 76 RiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKS--KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eecc--CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222 2336666544 34445566787788764
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.74 Score=51.05 Aligned_cols=232 Identities=14% Similarity=0.154 Sum_probs=119.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE---EEEe----ccCCCCeEEEEECCC---CCEEEEEeC-C--------
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTL----EEHTQWITDVRFSPS---LSRLATSSA-D-------- 615 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~---~~~l----~~h~~~I~~l~fspd---g~~Latgs~-D-------- 615 (834)
-+.|+|.|||++|++ ...|.|++++ ..+.. +..+ .........++|+|+ ..+|++... .
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 578999999977664 5699999999 44443 2232 234456899999994 233333322 1
Q ss_pred CeEEEEecCCCC-------ceeeeecc---CCCCeEEEEEccCCCcEEEEEeCC------------CcEEEEECCCCce-
Q 003279 616 RTVRVWDTENPD-------YSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNN------------SEIRYWSINNGSC- 672 (834)
Q Consensus 616 g~I~IWDl~s~~-------~~i~~~~~---h~~~V~sl~fspdg~~llasgs~D------------g~I~lwDl~s~~~- 672 (834)
..|.-|.+.... ..+..+.. .......|.|.|++..++.+|+.. |.|.-.+.. ++.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~p 160 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSIP 160 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcCC
Confidence 245555554431 11122222 233456799999985444444321 234334432 110
Q ss_pred ------------eeEee-cCCCeeEEEEecCCCEEEEEEcC--C--eEEEEECC--------C------C----------
Q 003279 673 ------------AGVFK-CQSGATQMRFQPRLGRILAAAIE--N--YISILDVE--------T------Q---------- 711 (834)
Q Consensus 673 ------------i~~~~-~~~~i~~l~~sp~g~~ll~~s~d--g--~I~iwDl~--------t------~---------- 711 (834)
...+. .......++|+|....|+++... + .|.+..-- . +
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 01111 12335678999985566655432 2 23332110 0 0
Q ss_pred ---eEEEEEeCCCCCEEEEEEcC-------CCCEEEEEe-CCeEEEEEcCCCCCceeEEE-eecCCCceEEEEEeCCCCE
Q 003279 712 ---VCRLKLQGHKNQVHSVCWNT-------SGEYLASVS-DELVRVWSIGSGSKGECIHE-LSCTGNKFHSCVFHPTFPS 779 (834)
Q Consensus 712 ---~~~~~l~~h~~~I~sl~~sp-------dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~-~~~~~~~I~svafspdg~~ 779 (834)
.++..+..| ..+..+.|.. .|.++++.. .+.|....+........... +......+..+++.|||..
T Consensus 241 ~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~L 319 (331)
T PF07995_consen 241 GFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGAL 319 (331)
T ss_dssp TS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEE
T ss_pred CcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeE
Confidence 123334433 5566777754 345666655 66888888865532222222 2233447899999999987
Q ss_pred EEEEEcCCeEE
Q 003279 780 LLVIGCYETLE 790 (834)
Q Consensus 780 L~sgs~dg~I~ 790 (834)
+++...+|.|+
T Consensus 320 yv~~d~~G~iy 330 (331)
T PF07995_consen 320 YVSDDSDGKIY 330 (331)
T ss_dssp EEEE-TTTTEE
T ss_pred EEEECCCCeEe
Confidence 77777777764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.027 Score=63.40 Aligned_cols=134 Identities=12% Similarity=0.088 Sum_probs=94.1
Q ss_pred CCEEE-EEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCC--------EEEEEeCCeEEEEEcCCCCCceeEEEe
Q 003279 691 LGRIL-AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE--------YLASVSDELVRVWSIGSGSKGECIHEL 761 (834)
Q Consensus 691 g~~ll-~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~--------~LasgsDg~I~IwDl~s~~~~~~i~~~ 761 (834)
.+.|+ .+.....|+-.|++.|+.+....-+.. |+-+.+.|+.+ .|+.-++..|.-||.+-.... .+...
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~~ 422 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAVV 422 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeeee
Confidence 34444 344457899999999999999987666 77777877654 455556889999998854321 22222
Q ss_pred ecC----CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecC
Q 003279 762 SCT----GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 762 ~~~----~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~D 827 (834)
..+ ...+.|++-..+| +|++|+.+|.|++||-...... .+.+...+|..|..+.+|++|+..+..
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 222 3445666666555 6999999999999997332222 677888999999999999987766543
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.17 Score=53.72 Aligned_cols=190 Identities=11% Similarity=0.156 Sum_probs=112.3
Q ss_pred eccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003279 633 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVET 710 (834)
Q Consensus 633 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~--~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t 710 (834)
+.+-...|.++.|+|+.+.++++... ..-.|+=...|..++++.. -.....+.+..++.+.++--.++.++++.+..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~-p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNK-PAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCCCcceEEEecCC-CceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 34455669999999998887766654 4444454455888888775 34456678877766666666688888887765
Q ss_pred CeEEE-------EEe--CC-CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-------CCceEEEE
Q 003279 711 QVCRL-------KLQ--GH-KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCV 772 (834)
Q Consensus 711 ~~~~~-------~l~--~h-~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-------~~~I~sva 772 (834)
...+. .+. .+ +.....++|+|....|+.+- -+-+.||.+......-.++....+ -..+.++.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 42221 111 12 55678999999988888887 444555555433211112211111 13466778
Q ss_pred EeCCCCEEE-EEEcCCeEEEEECCCCeEE--EeccCC-------CCeEEEEEeCCCCEEEE
Q 003279 773 FHPTFPSLL-VIGCYETLELWNMTENKTL--TLSAHD-------KLVSSLAASTVNGMVAS 823 (834)
Q Consensus 773 fspdg~~L~-sgs~dg~I~Iwdl~~~~~~--~l~~h~-------~~V~~lafspdg~~LaS 823 (834)
|++....|+ .+..++.|.-.|....-.- .+.... .....|+...+|.+.++
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 887555444 4445556766776655322 222111 12346777777664443
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.38 Score=51.11 Aligned_cols=163 Identities=12% Similarity=0.152 Sum_probs=107.6
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC
Q 003279 548 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 548 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~ 626 (834)
+.|-+..|.++.|+|+.+.|++......-.||=..+|+.+.++.- .-.....|.|..++.++++--.+..+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 345555699999999999999888888888887788899888742 1223457888888888888888899998887755
Q ss_pred Ccee---------eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-eee--Eeec--------CCCeeEEE
Q 003279 627 DYSL---------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAG--VFKC--------QSGATQMR 686 (834)
Q Consensus 627 ~~~i---------~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~-~i~--~~~~--------~~~i~~l~ 686 (834)
...+ ......+.....++|.|....+++ +-+..-+.||.+.... .+. .... -..+..+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~-aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFV-AKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEE-EEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 3211 112222566789999999776664 4445566666655322 111 0000 13466778
Q ss_pred EecCCCEEEEEEc-CCeEEEEECCCC
Q 003279 687 FQPRLGRILAAAI-ENYISILDVETQ 711 (834)
Q Consensus 687 ~sp~g~~ll~~s~-dg~I~iwDl~t~ 711 (834)
|++..+.+++-+. ++.+...|....
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC
Confidence 8876666555554 566777776644
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0055 Score=70.05 Aligned_cols=93 Identities=17% Similarity=0.238 Sum_probs=77.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeE-EEEEccCCCcEEEEEeCCCcEEEEECCCCce
Q 003279 594 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 672 (834)
Q Consensus 594 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~-sl~fspdg~~llasgs~Dg~I~lwDl~s~~~ 672 (834)
.-.|.-+.|+|...+||++..+|.|.++.+.- ..+.++.-|...++ +++|.|||+ +++.|-.||+|++.|++++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~--qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW--QRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEecc--ceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCc
Confidence 34578899999999999999999999999883 23666776777777 999999966 888999999999999999988
Q ss_pred eeE--eecCCCeeEEEEec
Q 003279 673 AGV--FKCQSGATQMRFQP 689 (834)
Q Consensus 673 i~~--~~~~~~i~~l~~sp 689 (834)
+.. +.....|.++.|.+
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 877 44567788888864
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.75 Score=48.76 Aligned_cols=194 Identities=13% Similarity=0.100 Sum_probs=115.3
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeec-cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 003279 593 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 671 (834)
Q Consensus 593 h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~-~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~ 671 (834)
-.+-+.++.++. ++.+.+.++.-++|.|+.++..+...-. ...+.-.++..+ |+ +++.+..|.-+.++|+.+..
T Consensus 85 ~~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn-~aYVadlddgfLivdvsdps 159 (370)
T COG5276 85 ARDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GN-YAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--CC-EEEEeeccCcEEEEECCCCC
Confidence 345577788864 4788888888899999998775433222 222445566655 44 56666656667788887643
Q ss_pred ---eeeEeecCCC-eeEEEEecCCCEEEEEEcCCeEEEEECCCCe---EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeE
Q 003279 672 ---CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQV---CRLKLQGHKNQVHSVCWNTSGEYLASVSDELV 744 (834)
Q Consensus 672 ---~i~~~~~~~~-i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~---~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I 744 (834)
....+...+. ...++++ |++-+++..|+.+.+.|+.... .+.... ....+.++..+++-.+++...+| +
T Consensus 160 sP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~eg-v 235 (370)
T COG5276 160 SPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYDEG-V 235 (370)
T ss_pred CceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEcccc-e
Confidence 2223333222 3455555 6778888899999999998753 222222 23367888888776666655555 6
Q ss_pred EEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 745 RVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 745 ~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
.+-|....+....+..... ..++..-.+.-.+++.++...+.-+-+.|+.+
T Consensus 236 livd~s~~ssp~~~gsyet-~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 236 LIVDVSGPSSPTVFGSYET-SNPVSISTVPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred EEEecCCCCCceEeecccc-CCcccccceecccceeeeeccccCceeEeccC
Confidence 6777776643333333322 22221113333455566666666666666654
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.039 Score=62.18 Aligned_cols=142 Identities=16% Similarity=0.177 Sum_probs=101.7
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCE-------EEEEEcCCeEEEEECCCC-e-EEEEEe
Q 003279 648 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR-------ILAAAIENYISILDVETQ-V-CRLKLQ 718 (834)
Q Consensus 648 dg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~-------ll~~s~dg~I~iwDl~t~-~-~~~~l~ 718 (834)
+.+.++.++.....|+-.|++.|+.+...+.+..|.-+.+.|+.+. -++|-.++.|.-||.+-. . .+....
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 3445566666677899999999999999999888999999887542 467778899999998843 2 222222
Q ss_pred CC----CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003279 719 GH----KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 793 (834)
Q Consensus 719 ~h----~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwd 793 (834)
+| .....|++-..+|. |++|+ +|.|++||- .+. .....+++-+.+|..|..+.+|++|++ +++..|.+.+
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~-IvvgS~~GdIRLYdr-i~~--~AKTAlPgLG~~I~hVdvtadGKwil~-Tc~tyLlLi~ 498 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGY-IVVGSLKGDIRLYDR-IGR--RAKTALPGLGDAIKHVDVTADGKWILA-TCKTYLLLID 498 (644)
T ss_pred ccccccccccceeeecCCce-EEEeecCCcEEeehh-hhh--hhhhcccccCCceeeEEeeccCcEEEE-ecccEEEEEE
Confidence 22 34566777666665 55556 999999997 331 333456777899999999999997665 4455676666
Q ss_pred C
Q 003279 794 M 794 (834)
Q Consensus 794 l 794 (834)
+
T Consensus 499 t 499 (644)
T KOG2395|consen 499 T 499 (644)
T ss_pred E
Confidence 5
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.34 Score=54.87 Aligned_cols=88 Identities=24% Similarity=0.385 Sum_probs=56.7
Q ss_pred EEEEcCCCCEEEEEeCCCcEEE---EeCC-----CCeEEEE----eccCC-CCeEEEEECC-----------CCCEEEEE
Q 003279 557 SCHFSPDGKLLATGGHDKKAVL---WCTE-----SFTVKST----LEEHT-QWITDVRFSP-----------SLSRLATS 612 (834)
Q Consensus 557 sl~fSpdg~~Lasgs~Dg~I~I---Wd~~-----t~~~~~~----l~~h~-~~I~~l~fsp-----------dg~~Latg 612 (834)
+++.+|++++||.+..+..|.+ |+.. ....... +.... ..|+++.|-| |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4788999999999988776665 6431 1122212 11111 5677776643 45789999
Q ss_pred eCCCeEEEEecCCCCceeeeeccCCCCeEEEEEc
Q 003279 613 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 646 (834)
Q Consensus 613 s~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fs 646 (834)
..+|.|++|.... .. +..-.-|..+|..|.+.
T Consensus 86 ~ssG~vrfyte~G-~L-L~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTENG-VL-LLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEeccc-hH-HHHHhcCccceEEEEec
Confidence 9999999998853 32 33334467777777664
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0019 Score=65.49 Aligned_cols=141 Identities=13% Similarity=0.063 Sum_probs=83.3
Q ss_pred EEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCcee-eEee-cCCCeeE-
Q 003279 608 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFK-CQSGATQ- 684 (834)
Q Consensus 608 ~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i-~~~~-~~~~i~~- 684 (834)
.|..-+.|+.|+-+++..-+...+....|...-.-+.+ ..-+++|+.+|.|++|+..-.... ..+. ....+.+
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~----~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA----SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeeccc----CceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence 34455678888888877544333332223222111222 224557888999999988732111 1111 1122222
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC-CCEEEEEEcCCCCEEEEE--e-CCeEEEEEcCCC
Q 003279 685 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-NQVHSVCWNTSGEYLASV--S-DELVRVWSIGSG 752 (834)
Q Consensus 685 l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~-~~I~sl~~spdg~~Lasg--s-Dg~I~IwDl~s~ 752 (834)
+....++.+..+++.+|.|+.|++.-.+.+.....|. .++..+..+..+++|+++ + |..++.|++...
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 2223344577888899999999999888777776677 555555555566666665 4 667777777543
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.13 Score=61.14 Aligned_cols=172 Identities=7% Similarity=-0.042 Sum_probs=84.6
Q ss_pred CcEEEEEeCC------CcEEEEECCCCceeeEeecCCC-eeEEEEecCCCEEEEEEcCC-----eEEEEECCCCeEEE--
Q 003279 650 EDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIEN-----YISILDVETQVCRL-- 715 (834)
Q Consensus 650 ~~llasgs~D------g~I~lwDl~s~~~i~~~~~~~~-i~~l~~sp~g~~ll~~s~dg-----~I~iwDl~t~~~~~-- 715 (834)
+.+++.|+.+ ..+..||..++.....-....+ .......-++..+++|+.++ .+..||..+.+-..
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 4577777743 3477889887654322211111 11122233556667777653 48889988753221
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEe-CC-----------------------eEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003279 716 KLQGHKNQVHSVCWNTSGEYLASVS-DE-----------------------LVRVWSIGSGSKGECIHELSCTGNKFHSC 771 (834)
Q Consensus 716 ~l~~h~~~I~sl~~spdg~~Lasgs-Dg-----------------------~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 771 (834)
.+.........+. -+|++++.|+ ++ .+..||..+..- ..+..+.. ......
T Consensus 384 ~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W-~~v~~m~~--~r~~~~ 458 (557)
T PHA02713 384 DMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW-ETLPNFWT--GTIRPG 458 (557)
T ss_pred CCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE-eecCCCCc--ccccCc
Confidence 1111111111222 2566666665 42 467787766521 11111111 111122
Q ss_pred EEeCCCCEEEEEEcC------CeEEEEECCC-CeEEEecc---CCCCeEEEEEeCCCCEEEEEecCC
Q 003279 772 VFHPTFPSLLVIGCY------ETLELWNMTE-NKTLTLSA---HDKLVSSLAASTVNGMVASASHDK 828 (834)
Q Consensus 772 afspdg~~L~sgs~d------g~I~Iwdl~~-~~~~~l~~---h~~~V~~lafspdg~~LaSgs~DG 828 (834)
+..-++...++|+.+ ..+..||..+ .+...+.. .......+. -++++.++|+.||
T Consensus 459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~ 523 (557)
T PHA02713 459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYES 523 (557)
T ss_pred EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecc
Confidence 223345555555543 2478899987 55543222 222222222 3678889999888
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.22 Score=51.04 Aligned_cols=163 Identities=15% Similarity=0.128 Sum_probs=103.0
Q ss_pred EEEEEeCCCcEEEEeCC--CCeEEEEecc-----CCCCeEEEEECCCCCEEEEEeC---------CCeEEEEecCCCCce
Q 003279 566 LLATGGHDKKAVLWCTE--SFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSA---------DRTVRVWDTENPDYS 629 (834)
Q Consensus 566 ~Lasgs~Dg~I~IWd~~--t~~~~~~l~~-----h~~~I~~l~fspdg~~Latgs~---------Dg~I~IWDl~s~~~~ 629 (834)
+.+.++..-.|.=||.. ..+...++.. .....++-..+|+|++++-.-. .|.++.|-....
T Consensus 73 ~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~--- 149 (310)
T KOG4499|consen 73 FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ--- 149 (310)
T ss_pred EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC---
Confidence 34444443445557732 3333344211 2345667778899998443222 245555554421
Q ss_pred eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE--CCCCc-----eeeEeec-----CCCeeEEEEecCCCEEEEE
Q 003279 630 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS--INNGS-----CAGVFKC-----QSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 630 i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwD--l~s~~-----~i~~~~~-----~~~i~~l~~sp~g~~ll~~ 697 (834)
+..+...-.--+.++|+.+.+.+.++-+.+-+|.-|| ..+|. .+..++. +-....+++..+|..++++
T Consensus 150 v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~ 229 (310)
T KOG4499|consen 150 VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVAT 229 (310)
T ss_pred ceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEE
Confidence 2223333344567899988887888888888998887 55543 2222222 1113345667778888888
Q ss_pred EcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcC
Q 003279 698 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 731 (834)
Q Consensus 698 s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~sp 731 (834)
-..++|..+|..+|+.+.++.-....|+|+||--
T Consensus 230 ~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 230 FNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 8889999999999999999998899999999964
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.53 E-value=1.1 Score=49.58 Aligned_cols=231 Identities=12% Similarity=0.139 Sum_probs=118.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEecCCCC-ceeee----eccCCCCeEEEEEccC---CCcEEEEEeCC--------
Q 003279 596 WITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRT----FTGHSTTVMSLDFHPS---KEDLLCSCDNN-------- 659 (834)
Q Consensus 596 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~-~~i~~----~~~h~~~V~sl~fspd---g~~llasgs~D-------- 659 (834)
..+.|+|.||+++|++ ...|.|++++..... ..+.. ..........++++|+ ...+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 3578999999877665 569999999933221 11222 2234467899999994 23343333321
Q ss_pred CcEEEEECCCC--c-----ee-eEeec----CCCeeEEEEecCCCEEEEEEcCC-------------eEEEEECCCCe--
Q 003279 660 SEIRYWSINNG--S-----CA-GVFKC----QSGATQMRFQPRLGRILAAAIEN-------------YISILDVETQV-- 712 (834)
Q Consensus 660 g~I~lwDl~s~--~-----~i-~~~~~----~~~i~~l~~sp~g~~ll~~s~dg-------------~I~iwDl~t~~-- 712 (834)
..|.-|.+..+ . .+ ..... ......+.|.|++..+++.+..+ .|.-++.....
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~ 161 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA 161 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCC
Confidence 24555555433 1 11 11111 23456799999986665555422 23333432110
Q ss_pred -----------EEEEEeCCCCCEEEEEEcCC-CCEEEEEe--CC--eEEEEEcCCCCC----------------------
Q 003279 713 -----------CRLKLQGHKNQVHSVCWNTS-GEYLASVS--DE--LVRVWSIGSGSK---------------------- 754 (834)
Q Consensus 713 -----------~~~~l~~h~~~I~sl~~spd-g~~Lasgs--Dg--~I~IwDl~s~~~---------------------- 754 (834)
...--.++. ....++|+|. |.++++-. +. .|.+. ..+..
T Consensus 162 dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i--~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRI--EPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp TSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE---TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEe--ccCCcCCCCCCcCCCCCCCCccccccC
Confidence 000011122 3457999998 76665533 33 34433 22210
Q ss_pred ----ceeEEEeecCCCceEEEEEeCC-------CCEEEEEEcCCeEEEEECCCCeEE----E-eccCCCCeEEEEEeCCC
Q 003279 755 ----GECIHELSCTGNKFHSCVFHPT-------FPSLLVIGCYETLELWNMTENKTL----T-LSAHDKLVSSLAASTVN 818 (834)
Q Consensus 755 ----~~~i~~~~~~~~~I~svafspd-------g~~L~sgs~dg~I~Iwdl~~~~~~----~-l~~h~~~V~~lafspdg 818 (834)
..++..+..| ..+..+.|... +.+|++.-..+.|....++.+..+ . +......+..|++.|||
T Consensus 239 ~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG 317 (331)
T PF07995_consen 239 CPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG 317 (331)
T ss_dssp -TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS
T ss_pred CCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC
Confidence 0122223322 44556666543 334444444558888888755333 2 22345589999999999
Q ss_pred CEEEEEecCCcEE
Q 003279 819 GMVASASHDKCVK 831 (834)
Q Consensus 819 ~~LaSgs~DG~I~ 831 (834)
.++++.+.+|.|+
T Consensus 318 ~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 318 ALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEE-TTTTEE
T ss_pred eEEEEECCCCeEe
Confidence 9999888888874
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.89 Score=48.66 Aligned_cols=197 Identities=15% Similarity=0.127 Sum_probs=112.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCC-------CCeEEEEecc-----CCCCeEEEEECCCCC------------EEE
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTE-------SFTVKSTLEE-----HTQWITDVRFSPSLS------------RLA 610 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~-------t~~~~~~l~~-----h~~~I~~l~fspdg~------------~La 610 (834)
-+.|+|+|.+.+-++....+...+||.. ....+.++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4679999999888887788999999986 1223344432 234578888875322 367
Q ss_pred EEeCCCeEEEEecCCCCc----eeeeec-cCCCCe-EEEEEcc--CCCcEEEEEeCCCcEEEEECCCCceee--EeecC-
Q 003279 611 TSSADRTVRVWDTENPDY----SLRTFT-GHSTTV-MSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQ- 679 (834)
Q Consensus 611 tgs~Dg~I~IWDl~s~~~----~i~~~~-~h~~~V-~sl~fsp--dg~~llasgs~Dg~I~lwDl~s~~~i~--~~~~~- 679 (834)
.+++||+|.-|...-... ....+. .....| ..+++.. .+..|.++--..++|.+||-.=.+... .+...
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 889999999998532221 112222 112333 3455543 245455554567889999854322110 01100
Q ss_pred -------CC---------eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe--CCCCCEEEEEEcC------CCCE
Q 003279 680 -------SG---------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNT------SGEY 735 (834)
Q Consensus 680 -------~~---------i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~--~h~~~I~sl~~sp------dg~~ 735 (834)
-. |+-..-.++...=+.+..-|.|.+||+.- ..++++. +.-...+.|+..| .+.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 00 11111122222233334457899999874 4555553 2333455676655 4566
Q ss_pred EEEEe-CCeEEEEEcCCC
Q 003279 736 LASVS-DELVRVWSIGSG 752 (834)
Q Consensus 736 Lasgs-Dg~I~IwDl~s~ 752 (834)
|+.-- ||+|.+||..++
T Consensus 264 LVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSG 281 (336)
T ss_pred EEeecCCceeEEecCCCC
Confidence 66554 999999999887
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.45 Score=51.75 Aligned_cols=186 Identities=12% Similarity=0.114 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE-EEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeee
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 633 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~-~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~ 633 (834)
...+....++..++ ++..|.|+.=. +.++. ......-.+.+..+..++||+++++++......-||........ ..
T Consensus 106 ~~~i~~l~~~~~~l-~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~-~~ 182 (302)
T PF14870_consen 106 PFGITALGDGSAEL-AGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQP-HN 182 (302)
T ss_dssp EEEEEEEETTEEEE-EETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EE-EE
T ss_pred eeEEEEcCCCcEEE-EcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceE-Ec
Confidence 33444444443333 34445543322 22322 23334556789999999999999998777777788876433322 22
Q ss_pred ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC-CCceeeE----e-ecCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003279 634 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGV----F-KCQSGATQMRFQPRLGRILAAAIENYISILD 707 (834)
Q Consensus 634 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~-s~~~i~~----~-~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwD 707 (834)
......|..+.|.|++. +.+ ....|.|++=+.. ..+.-.. + .....+..++|.+++...+ ++..|.+. ..
T Consensus 183 r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa-~gg~G~l~-~S 258 (302)
T PF14870_consen 183 RNSSRRIQSMGFSPDGN-LWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWA-VGGSGTLL-VS 258 (302)
T ss_dssp --SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEE-EESTT-EE-EE
T ss_pred cCccceehhceecCCCC-EEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEE-EeCCccEE-Ee
Confidence 23467899999999966 433 3478888887722 2211111 1 1123478899998855555 55555433 34
Q ss_pred CCCCeEEEEEe---CCCCCEEEEEEcCCCCEEEEEeCCeEEEE
Q 003279 708 VETQVCRLKLQ---GHKNQVHSVCWNTSGEYLASVSDELVRVW 747 (834)
Q Consensus 708 l~t~~~~~~l~---~h~~~I~sl~~spdg~~LasgsDg~I~Iw 747 (834)
...|+.-.... .-...++.|.|.++.+-++.|.+|.|.-|
T Consensus 259 ~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 259 TDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp SSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred CCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 44443333322 33556889999888888888889977655
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=2.2 Score=48.38 Aligned_cols=146 Identities=11% Similarity=0.064 Sum_probs=82.7
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCe-EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCce--eEE
Q 003279 683 TQMRFQPRLGRILAAAIENYISILDVETQV-CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE--CIH 759 (834)
Q Consensus 683 ~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~-~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~--~i~ 759 (834)
..+...+++..++++.....++-||--... .... ......+.++.|.+++.+++++.+|.+.+ ....+.... .+.
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~-~~~~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~ 319 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHN-RASARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFE 319 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCCCCcceEEec-CCCccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCccccccee
Confidence 334556666555554443333334432211 1111 22345688999999999998887776544 333332111 222
Q ss_pred Eeec--CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-Ee---ccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 760 ELSC--TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL---SAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 760 ~~~~--~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l---~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
.... ....+..+.|.+++. +++++..|.+.... ..++.- .. ..-...++.+.|.++++.+++| .+|.|.-|
T Consensus 320 ~~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 320 EADIKSRGFGILDVGYRSKKE-AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred ecccCCCCcceEEEEEcCCCc-EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 2222 224588899998776 66677777666553 444433 22 2334578899998776666654 77877655
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.15 Score=46.46 Aligned_cols=100 Identities=21% Similarity=0.207 Sum_probs=69.4
Q ss_pred eEEEE---EccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003279 640 VMSLD---FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 716 (834)
Q Consensus 640 V~sl~---fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~ 716 (834)
|++++ |.-+|..-|++|+.|..|++|+-. ..+..+.....+.+++-... ..|+.+..+|+|-+|+-.. .+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeee
Confidence 44554 445666778899999999999764 67778888888999888776 7799999999999998643 3334
Q ss_pred EeCCCCCEEEEEEcC-CC---CEEEEEe-CCeEE
Q 003279 717 LQGHKNQVHSVCWNT-SG---EYLASVS-DELVR 745 (834)
Q Consensus 717 l~~h~~~I~sl~~sp-dg---~~Lasgs-Dg~I~ 745 (834)
++. +..++++++.. ++ .-|++|- +|.|-
T Consensus 77 iKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 442 33466665543 32 1445554 77664
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=96.44 E-value=2.2 Score=47.93 Aligned_cols=195 Identities=10% Similarity=0.056 Sum_probs=107.0
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccC--CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCC-
Q 003279 561 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS- 637 (834)
Q Consensus 561 Spdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h--~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~- 637 (834)
.-|| .++++..||.|.-.|.++++.+.....- ...+.+-.+..+|+ |+.++.++.++.+|..++.. +..+....
T Consensus 66 ~~dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~-~W~~~~~~~ 142 (370)
T COG1520 66 DGDG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTL-VWSRNVGGS 142 (370)
T ss_pred eeCC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcE-EEEEecCCC
Confidence 3355 4555577888888898888876433222 12333333333665 77888899899999976665 33333222
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC-eeEEEEe--cCCCEEEEEEc--CCeEEEEECCCCe
Q 003279 638 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQ--PRLGRILAAAI--ENYISILDVETQV 712 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~-i~~l~~s--p~g~~ll~~s~--dg~I~iwDl~t~~ 712 (834)
..+..-.+..++ .++.++.++.+...|..+++....+..... -..+... .....++.+.. ++.+.-+|.+++.
T Consensus 143 ~~~~~~~v~~~~--~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 143 PYYASPPVVGDG--TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred eEEecCcEEcCc--EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCc
Confidence 112222222232 344454689999999999988877665332 0011111 23345556655 6678888888887
Q ss_pred EEEEEeCCC----CCE------EEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeec
Q 003279 713 CRLKLQGHK----NQV------HSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC 763 (834)
Q Consensus 713 ~~~~l~~h~----~~I------~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~ 763 (834)
.....+.+. ..+ ..-...-++..++.+.++.+...|..++ +.+-.+..
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G---~~~W~~~~ 278 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTG---ELIWSFPA 278 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCC---ceEEEEec
Confidence 776643111 111 0001111233333333777888888887 44444443
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.77 Score=56.36 Aligned_cols=225 Identities=10% Similarity=0.038 Sum_probs=116.2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCC--------eEEEEECC----------------CCCEEEEEeCCCeEE
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--------ITDVRFSP----------------SLSRLATSSADRTVR 619 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~--------I~~l~fsp----------------dg~~Latgs~Dg~I~ 619 (834)
+..|++++.++.|+-.|..+|+.+-.+...... +..+.+.. .+..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 446777778889999999999888776432211 12233321 234788898999999
Q ss_pred EEecCCCCceeeeeccCCCCeE-------------EEEEcc--CCCcEEEEEeC----------CCcEEEEECCCCceee
Q 003279 620 VWDTENPDYSLRTFTGHSTTVM-------------SLDFHP--SKEDLLCSCDN----------NSEIRYWSINNGSCAG 674 (834)
Q Consensus 620 IWDl~s~~~~i~~~~~h~~~V~-------------sl~fsp--dg~~llasgs~----------Dg~I~lwDl~s~~~i~ 674 (834)
-.|.++++.+.. +. ..+.|. .+.-.| .++ .+++++. +|.|+-+|+++|+.+.
T Consensus 274 ALDA~TGk~~W~-fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTGKLCED-FG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCCCEEEE-ec-CCCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 999998876432 21 111110 001111 123 3444432 6889999999999999
Q ss_pred EeecCCCeeEEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003279 675 VFKCQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 752 (834)
Q Consensus 675 ~~~~~~~i~~l~~sp~g~~ll~~s~dg-~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 752 (834)
.+........- ..+.+.....++... ....||.+.+....-.- ... ..+....+...... .+.|.-.|.+++
T Consensus 351 ~~~~g~p~~~~-~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptG-n~~----pd~~g~~r~~~~n~y~~slvALD~~TG 424 (764)
T TIGR03074 351 AWDPGNPDPTA-PPAPGETYTRNTPNSWSVASYDEKLGLVYLPMG-NQT----PDQWGGDRTPADEKYSSSLVALDATTG 424 (764)
T ss_pred EEecCCCCccc-CCCCCCEeccCCCCccCceEEcCCCCeEEEeCC-Ccc----ccccCCccccCcccccceEEEEeCCCC
Confidence 88753221110 011222222122211 34455665554432211 111 11100000000001 345666666666
Q ss_pred CCceeEEEeecCCC---------ceEEEEEeC-CC---CEEEEEEcCCeEEEEECCCCeEE
Q 003279 753 SKGECIHELSCTGN---------KFHSCVFHP-TF---PSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 753 ~~~~~i~~~~~~~~---------~I~svafsp-dg---~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
+ ..-.+..... ...-+.+.. +| +.++.++.+|.++++|.++++.+
T Consensus 425 k---~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 425 K---ERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred c---eEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 3 2222221111 111122322 45 36888999999999999999877
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.84 Score=50.98 Aligned_cols=188 Identities=15% Similarity=0.176 Sum_probs=116.8
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECC----CCCE--EEEEe-CC---CeEEEEecCCCCceee
Q 003279 562 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP----SLSR--LATSS-AD---RTVRVWDTENPDYSLR 631 (834)
Q Consensus 562 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fsp----dg~~--Latgs-~D---g~I~IWDl~s~~~~i~ 631 (834)
|...+|+....++-+.+||+.. +.+..+. .+.++.+.... +++. |+.++ .+ .+|++|.+......+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~G-k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDG-KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCCC-cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 3456788888889999999765 5555553 23344333321 2332 44444 32 4799998874332333
Q ss_pred eecc-------CCCCeEEEEEc--c-CCCcEEEEEeCCCcEEEEECC---CC----ceeeEeecCCCeeEEEEecCCCEE
Q 003279 632 TFTG-------HSTTVMSLDFH--P-SKEDLLCSCDNNSEIRYWSIN---NG----SCAGVFKCQSGATQMRFQPRLGRI 694 (834)
Q Consensus 632 ~~~~-------h~~~V~sl~fs--p-dg~~llasgs~Dg~I~lwDl~---s~----~~i~~~~~~~~i~~l~~sp~g~~l 694 (834)
.+.. ....++.+|+. + ++..+++..+.+|.+..|.+. .+ +.++.|...+.+..+........|
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL 222 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE
Confidence 3321 12347778764 3 456677788889988888774 23 467888888899999999999999
Q ss_pred EEEEcCCeEEEEECCC-----CeEEEEEeC--CCCCEEEEEEcC--CC-CEEEEEe--CCeEEEEEcCCC
Q 003279 695 LAAAIENYISILDVET-----QVCRLKLQG--HKNQVHSVCWNT--SG-EYLASVS--DELVRVWSIGSG 752 (834)
Q Consensus 695 l~~s~dg~I~iwDl~t-----~~~~~~l~~--h~~~I~sl~~sp--dg-~~Lasgs--Dg~I~IwDl~s~ 752 (834)
+++-++..|.-|+.+. +..+....+ ....|..|++-. ++ .||++++ +++..||+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999999999872 233333322 345778887743 44 3677666 889999998764
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.35 E-value=2.5 Score=47.64 Aligned_cols=220 Identities=10% Similarity=0.067 Sum_probs=104.2
Q ss_pred CCCEEEEEe-CCCeEEEEecCCCCc---eeeeecc---CC----CCeEEEEEccCCCcEEEEE--eC----CCcEEEEEC
Q 003279 605 SLSRLATSS-ADRTVRVWDTENPDY---SLRTFTG---HS----TTVMSLDFHPSKEDLLCSC--DN----NSEIRYWSI 667 (834)
Q Consensus 605 dg~~Latgs-~Dg~I~IWDl~s~~~---~i~~~~~---h~----~~V~sl~fspdg~~llasg--s~----Dg~I~lwDl 667 (834)
+.++|+..+ ..+.|+|+|+.+... ..+.+.. +. .....+..-|+|+ +++++ +. -|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcEEEEcC
Confidence 456777766 678999999984321 1222221 11 1222334446765 44444 22 356888888
Q ss_pred CCCceeeEeecCCC----eeEEEEecCCCEEEEEEc--------------------CCeEEEEECCCCeEEEEEeCCCC-
Q 003279 668 NNGSCAGVFKCQSG----ATQMRFQPRLGRILAAAI--------------------ENYISILDVETQVCRLKLQGHKN- 722 (834)
Q Consensus 668 ~s~~~i~~~~~~~~----i~~l~~sp~g~~ll~~s~--------------------dg~I~iwDl~t~~~~~~l~~h~~- 722 (834)
++.+.......... -..+-|.|..+.+++... ...+++||+.+.+.+.++.-...
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 88777776665322 466778888888887643 34799999999999988875332
Q ss_pred -CEEEEEEc--CCCCEEEEEe--CCeEEEEEc-CCCCC-ceeEEEeecC-----------------CCceEEEEEeCCCC
Q 003279 723 -QVHSVCWN--TSGEYLASVS--DELVRVWSI-GSGSK-GECIHELSCT-----------------GNKFHSCVFHPTFP 778 (834)
Q Consensus 723 -~I~sl~~s--pdg~~Lasgs--Dg~I~IwDl-~s~~~-~~~i~~~~~~-----------------~~~I~svafspdg~ 778 (834)
.+..|.|. |+..+=+++. ...|..|-- ..+.- .+.+..+... ..-|+.|.+|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 34466664 4455544444 555555544 33210 1112222111 24578999999999
Q ss_pred EEEEEEc-CCeEEEEECCCCe---EE-E-ecc---------------CCCCeEEEEEeCCCCEEEEEe
Q 003279 779 SLLVIGC-YETLELWNMTENK---TL-T-LSA---------------HDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 779 ~L~sgs~-dg~I~Iwdl~~~~---~~-~-l~~---------------h~~~V~~lafspdg~~LaSgs 825 (834)
+|++++. .|.|+.||+.... .+ . ..+ -.+...-|..|.||+.|+..+
T Consensus 325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 9998876 6799999997642 22 1 111 112335678889998777654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.25 E-value=1.6 Score=45.89 Aligned_cols=243 Identities=11% Similarity=-0.009 Sum_probs=151.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeee-
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF- 633 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~- 633 (834)
-..++-.+||..-+++...+.|--.|..+++....--+....-..|..-||+..-++-+.. -|.-.|-++.+.....+
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence 4567888999988899888888888999998887766666677788899998877765443 45555555433222111
Q ss_pred -ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003279 634 -TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVET 710 (834)
Q Consensus 634 -~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~--~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t 710 (834)
...........|.+.|. +.+++.. |.---.|.. ...+.++.. ......+|..|+|...++.-.++.|-..|..+
T Consensus 143 ~~~a~~nlet~vfD~~G~-lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~ 219 (353)
T COG4257 143 LEHADANLETAVFDPWGN-LWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFA 219 (353)
T ss_pred cccCCCcccceeeCCCcc-EEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccccc
Confidence 12235677888998876 4446542 211111111 112222322 35577899999999998888899999999887
Q ss_pred CeEEEEE-e-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003279 711 QVCRLKL-Q-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 787 (834)
Q Consensus 711 ~~~~~~l-~-~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg 787 (834)
+.....- . ........+--+|.|+.-++.. .+.+..||-.... -.-..+......-.++.....++.-++-...+
T Consensus 220 ~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLPgs~arpys~rVD~~grVW~sea~ag 297 (353)
T COG4257 220 GHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLPGSKARPYSMRVDRHGRVWLSEADAG 297 (353)
T ss_pred CCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCCCCCCCcceeeeccCCcEEeeccccC
Confidence 7322111 1 1122344555667777777765 7788888766542 22233444555566666666666444444556
Q ss_pred eEEEEECCCCeEEEec
Q 003279 788 TLELWNMTENKTLTLS 803 (834)
Q Consensus 788 ~I~Iwdl~~~~~~~l~ 803 (834)
.|.-+|-++.....+.
T Consensus 298 ai~rfdpeta~ftv~p 313 (353)
T COG4257 298 AIGRFDPETARFTVLP 313 (353)
T ss_pred ceeecCcccceEEEec
Confidence 7777777666555443
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.11 E-value=1.2 Score=47.23 Aligned_cols=140 Identities=17% Similarity=0.160 Sum_probs=87.6
Q ss_pred CeEEEEECCCCCEEEEEe---CCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE-CCCCc
Q 003279 596 WITDVRFSPSLSRLATSS---ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS-INNGS 671 (834)
Q Consensus 596 ~I~~l~fspdg~~Latgs---~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwD-l~s~~ 671 (834)
.+...++++++..++... ....++++...... ...+. ...+....|++++. +.+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~~--g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVLT--GGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeecc--CCccccccccCCCC-EEEEEcCCCceEEEEecCCCc
Confidence 688999999999887766 33456666554322 22222 23788889999955 554545455555553 33333
Q ss_pred eee-Eeec--C-CCeeEEEEecCCCEEEEEEc---CCeEEEEECC---CC------eEEEEEeCCCCCEEEEEEcCCCCE
Q 003279 672 CAG-VFKC--Q-SGATQMRFQPRLGRILAAAI---ENYISILDVE---TQ------VCRLKLQGHKNQVHSVCWNTSGEY 735 (834)
Q Consensus 672 ~i~-~~~~--~-~~i~~l~~sp~g~~ll~~s~---dg~I~iwDl~---t~------~~~~~l~~h~~~I~sl~~spdg~~ 735 (834)
... .... . ..|..+.++|||..++.... ++.|.+--+. .+ ............+..+.|.+++.+
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 221 1111 1 27999999999999888774 4667666443 22 111122223467899999999998
Q ss_pred EEEEe
Q 003279 736 LASVS 740 (834)
Q Consensus 736 Lasgs 740 (834)
++.+.
T Consensus 180 ~V~~~ 184 (253)
T PF10647_consen 180 VVLGR 184 (253)
T ss_pred EEEeC
Confidence 88877
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.07 E-value=2.4 Score=47.69 Aligned_cols=144 Identities=11% Similarity=0.111 Sum_probs=80.8
Q ss_pred CCeEEEEEcCCCCEEEEEe-----------CCC-cEEEEeCCC--Ce--EEEEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 003279 553 SKVESCHFSPDGKLLATGG-----------HDK-KAVLWCTES--FT--VKSTLEEHTQWITDVRFSPSLSRLATSSADR 616 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs-----------~Dg-~I~IWd~~t--~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 616 (834)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+.........++|.+++ +++ ++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 3467899999998777643 223 677775432 33 223444344456889999888 444 44444
Q ss_pred eEEEEecCCC-----Cc--eeeeecc----CCCCeEEEEEccCCCcEEEEEeC------------------CCcEEEEEC
Q 003279 617 TVRVWDTENP-----DY--SLRTFTG----HSTTVMSLDFHPSKEDLLCSCDN------------------NSEIRYWSI 667 (834)
Q Consensus 617 ~I~IWDl~s~-----~~--~i~~~~~----h~~~V~sl~fspdg~~llasgs~------------------Dg~I~lwDl 667 (834)
.+++.|.+.. +. .+..+.. +......++|.|||..++..++. .|.|..+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334455321 11 1112222 13447789999998755544421 144666666
Q ss_pred CCCceeeEeecCCCeeEEEEecCCCEEEEEE
Q 003279 668 NNGSCAGVFKCQSGATQMRFQPRLGRILAAA 698 (834)
Q Consensus 668 ~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s 698 (834)
..++.............++|++++..+++-.
T Consensus 172 dg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 6554332222233467899999887765543
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.26 Score=58.41 Aligned_cols=157 Identities=10% Similarity=0.069 Sum_probs=76.4
Q ss_pred CcEEEEEeCC-----CcEEEEECCCCceeeEeecCCC--eeEEEEecCCCEEEEEEcC------CeEEEEECCCCeEEEE
Q 003279 650 EDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLK 716 (834)
Q Consensus 650 ~~llasgs~D-----g~I~lwDl~s~~~i~~~~~~~~--i~~l~~sp~g~~ll~~s~d------g~I~iwDl~t~~~~~~ 716 (834)
+.+++.|+.+ ..+..||..+++....-....+ -.+++ .-++..++.|+.+ +.+..||..+.+-...
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 4566677654 3577888877654332221111 12222 2345566666632 4688999887543221
Q ss_pred --EeCCCCCEEEEEEcCCCCEEEEEe-CC--------eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003279 717 --LQGHKNQVHSVCWNTSGEYLASVS-DE--------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 785 (834)
Q Consensus 717 --l~~h~~~I~sl~~spdg~~Lasgs-Dg--------~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~ 785 (834)
+..... -.+++. .++.+++.|+ ++ .+.+||..+..- ..+............+.+ ++..+++|+.
T Consensus 422 ~~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~r~~~~~~~~--~~~iyv~GG~ 496 (534)
T PHA03098 422 SPLPISHY-GGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW-TELSSLNFPRINASLCIF--NNKIYVVGGD 496 (534)
T ss_pred CCCCcccc-CceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCce-eeCCCCCcccccceEEEE--CCEEEEEcCC
Confidence 111111 112222 3455555554 21 388888877521 111111111111122222 5555556654
Q ss_pred C-----CeEEEEECCCCeEEEeccCCCCeEEE
Q 003279 786 Y-----ETLELWNMTENKTLTLSAHDKLVSSL 812 (834)
Q Consensus 786 d-----g~I~Iwdl~~~~~~~l~~h~~~V~~l 812 (834)
+ +.|.+||..+.+...+......+..+
T Consensus 497 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~ 528 (534)
T PHA03098 497 KYEYYINEIEVYDDKTNTWTLFCKFPKVIGSL 528 (534)
T ss_pred cCCcccceeEEEeCCCCEEEecCCCcccccce
Confidence 3 47899999888776554443334333
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.35 Score=55.61 Aligned_cols=171 Identities=12% Similarity=0.185 Sum_probs=104.7
Q ss_pred CCeEEEEEccCCCcEEEEEe--CCCcEEEEECCCCceeeEeecCCCeeEEEEecC----CCEEEEEEcCCeEEEEECCC-
Q 003279 638 TTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR----LGRILAAAIENYISILDVET- 710 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs--~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~----g~~ll~~s~dg~I~iwDl~t- 710 (834)
.+|..++|. ||+.++.+.- .+|.+++=| .+.+..| ..|..+.|.|- ...+++.-....|.||-+.-
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF---EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF---EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc---ceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 467888886 5565555542 233333322 2233333 56888999884 44688888899999998752
Q ss_pred ----CeEEEEEeC-C--CCCE--EEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003279 711 ----QVCRLKLQG-H--KNQV--HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 780 (834)
Q Consensus 711 ----~~~~~~l~~-h--~~~I--~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L 780 (834)
.+.+..-.. . .-+| ..+.|+|...+|++-. .+.-.+++++.... .....+ ...+.|.|.+|..||..|
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi-~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS-RVKADI-KTSGLIHCACWTKDGQRL 170 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc-eEEEec-cCCceEEEEEecCcCCEE
Confidence 222221111 1 1122 3678999999998877 44445667765432 222333 457889999999999988
Q ss_pred EEEEcCC-eEEEEECCCCeEE-----EeccCCCCeEEEEEeCC
Q 003279 781 LVIGCYE-TLELWNMTENKTL-----TLSAHDKLVSSLAASTV 817 (834)
Q Consensus 781 ~sgs~dg-~I~Iwdl~~~~~~-----~l~~h~~~V~~lafspd 817 (834)
+++-... .-+|||-..+... .+..-.+.|.++.-.-|
T Consensus 171 VVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d 213 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD 213 (671)
T ss_pred EEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc
Confidence 8776554 7889986544322 34445566766654443
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.13 Score=62.54 Aligned_cols=101 Identities=20% Similarity=0.237 Sum_probs=70.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC-eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeE
Q 003279 563 DGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 641 (834)
Q Consensus 563 dg~~Lasgs~Dg~I~IWd~~t~-~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~ 641 (834)
-+.+++.|+..|.|...|.... .....=..-.++|++++|+.+|+.++.|-.+|.|.+||+..++. ++.+..|..+++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~-l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI-LKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc-eeeeeecCCccc
Confidence 3557888998899988886642 22222234567899999999999999999999999999998654 666666665555
Q ss_pred EEE---EccCCCcEEEEEeCCCcEEEEEC
Q 003279 642 SLD---FHPSKEDLLCSCDNNSEIRYWSI 667 (834)
Q Consensus 642 sl~---fspdg~~llasgs~Dg~I~lwDl 667 (834)
.+- +..++. .+.+++..|. +|.+
T Consensus 177 ~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 543 333333 5557766665 4543
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.75 E-value=1.2 Score=54.75 Aligned_cols=67 Identities=10% Similarity=0.064 Sum_probs=47.0
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeecCCCee-------------EEEEec--CCCEEEEEEc----------CCeEEEE
Q 003279 652 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-------------QMRFQP--RLGRILAAAI----------ENYISIL 706 (834)
Q Consensus 652 llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~-------------~l~~sp--~g~~ll~~s~----------dg~I~iw 706 (834)
.++.++.|+.|.-.|.++|+.+..+..++.+. .+.-.| .++.+++++. +|.|+-|
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 45567789999999999999998775433321 011111 2456677653 5889999
Q ss_pred ECCCCeEEEEEe
Q 003279 707 DVETQVCRLKLQ 718 (834)
Q Consensus 707 Dl~t~~~~~~l~ 718 (834)
|+++|+.+..+.
T Consensus 342 Da~TGkl~W~~~ 353 (764)
T TIGR03074 342 DVNTGALVWAWD 353 (764)
T ss_pred ECCCCcEeeEEe
Confidence 999999998876
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=1.2 Score=49.32 Aligned_cols=150 Identities=11% Similarity=0.106 Sum_probs=87.4
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEE-EecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce
Q 003279 594 TQWITDVRFSPSLSRLATSSADRTVRV-WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 672 (834)
Q Consensus 594 ~~~I~~l~fspdg~~Latgs~Dg~I~I-WDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~ 672 (834)
...+.++.+.+++.+++++ ..|.+.. +|-..... ......-...++++.+.+++. +++++ ..|.+++=..+.+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW-~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAW-TPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeE-EEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCCCCc
Confidence 4578999999988776665 4554443 22221112 112223456789999999876 44344 467665333444432
Q ss_pred eeEeec-----CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE---eCCCCCEEEEEEcCCCCEEEEEeCCeE
Q 003279 673 AGVFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL---QGHKNQVHSVCWNTSGEYLASVSDELV 744 (834)
Q Consensus 673 i~~~~~-----~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l---~~h~~~I~sl~~spdg~~LasgsDg~I 744 (834)
-..... ...+..+.+.+++. +++++.+|.|.. ....++.-... ..-....+.+.|..+++.+++|..|.|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred cccccCCccccccceeeEEEcCCCC-EEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 222111 23467788888755 555666675553 33433332222 222346788888888888888889988
Q ss_pred EEEEc
Q 003279 745 RVWSI 749 (834)
Q Consensus 745 ~IwDl 749 (834)
..|+-
T Consensus 326 l~~~~ 330 (334)
T PRK13684 326 LRYVG 330 (334)
T ss_pred EEecC
Confidence 87763
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=95.68 E-value=1.1 Score=49.65 Aligned_cols=175 Identities=7% Similarity=-0.035 Sum_probs=80.7
Q ss_pred CcEEEEEeCC-----CcEEEEECCCCceeeEeec-----C-CCeeEEEEecCCCEEEEEEcC-----------CeEEEEE
Q 003279 650 EDLLCSCDNN-----SEIRYWSINNGSCAGVFKC-----Q-SGATQMRFQPRLGRILAAAIE-----------NYISILD 707 (834)
Q Consensus 650 ~~llasgs~D-----g~I~lwDl~s~~~i~~~~~-----~-~~i~~l~~sp~g~~ll~~s~d-----------g~I~iwD 707 (834)
..+++.|+.+ ..+.+||+.+.+-...-.. . ......+...++..++.|+.+ ..|.+||
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence 4566666643 3578899887654432111 1 111222223345566666643 2477889
Q ss_pred CCCCeEEEEEeCC----C-CCEEEEEEcCCCCEEEEEe-C-------------CeEEEEEcCCCCCceeEEEee-cCCCc
Q 003279 708 VETQVCRLKLQGH----K-NQVHSVCWNTSGEYLASVS-D-------------ELVRVWSIGSGSKGECIHELS-CTGNK 767 (834)
Q Consensus 708 l~t~~~~~~l~~h----~-~~I~sl~~spdg~~Lasgs-D-------------g~I~IwDl~s~~~~~~i~~~~-~~~~~ 767 (834)
.++.+-.. +... . ..-.+++. -++++++.++ + ..|.+||+.+..- ..+.... .....
T Consensus 166 ~~~~~W~~-l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W-~~~~~~g~~P~~r 242 (341)
T PLN02153 166 IADGKWVQ-LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKW-TEVETTGAKPSAR 242 (341)
T ss_pred CCCCeEee-CCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcE-EeccccCCCCCCc
Confidence 88753221 1111 0 11112222 2455555433 2 3588888876521 1111110 01111
Q ss_pred eEEEEEeCCCCEEEEEEcC--------------CeEEEEECCCCeEEEeccCCC------C--eEEEEEeCCCCEEEEEe
Q 003279 768 FHSCVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTLSAHDK------L--VSSLAASTVNGMVASAS 825 (834)
Q Consensus 768 I~svafspdg~~L~sgs~d--------------g~I~Iwdl~~~~~~~l~~h~~------~--V~~lafspdg~~LaSgs 825 (834)
....+..-++..++.|+.. +.|+.||+.+.....+..... . ..++...-++++++.|+
T Consensus 243 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 243 SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGG 322 (341)
T ss_pred ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcC
Confidence 1111222345556666641 268889988776554321111 1 12333344456777777
Q ss_pred cC
Q 003279 826 HD 827 (834)
Q Consensus 826 ~D 827 (834)
.+
T Consensus 323 ~~ 324 (341)
T PLN02153 323 KL 324 (341)
T ss_pred cC
Confidence 64
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=95.66 E-value=2 Score=48.76 Aligned_cols=72 Identities=13% Similarity=0.225 Sum_probs=49.1
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEE-EEE-cC--C--------------CCEEEEEe--
Q 003279 681 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS-VCW-NT--S--------------GEYLASVS-- 740 (834)
Q Consensus 681 ~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~s-l~~-sp--d--------------g~~Lasgs-- 740 (834)
.+.+++.+|.+.+.++...-|.|.++|+.++..++.+++..+.-.. +.. .. . ..+|+.-.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 3778999999887777666699999999999888877765432111 100 01 0 12444433
Q ss_pred CCeEEEEEcCCC
Q 003279 741 DELVRVWSIGSG 752 (834)
Q Consensus 741 Dg~I~IwDl~s~ 752 (834)
-|.|.||+++.+
T Consensus 389 Rg~lEvW~~~~g 400 (415)
T PF14655_consen 389 RGILEVWSMRQG 400 (415)
T ss_pred CCeEEEEecCCC
Confidence 789999999887
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.61 E-value=2.6 Score=47.27 Aligned_cols=120 Identities=17% Similarity=0.198 Sum_probs=85.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE----EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC
Q 003279 551 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 551 H~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~----~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~ 626 (834)
..++|.++.||+|.+.||+--.|++|.+++....+.. .+.+..+..|...+|+.+ .-+|..+..| |-+|-+...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 4568999999999999999999999999987432222 223445566999999866 4566655444 777877766
Q ss_pred CceeeeeccCCCCeEEEEEccCCCcEEEEEe-CCCcEEEEECCCCce
Q 003279 627 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSC 672 (834)
Q Consensus 627 ~~~i~~~~~h~~~V~sl~fspdg~~llasgs-~Dg~I~lwDl~s~~~ 672 (834)
...++....|...|....|+++..-++.+.+ ..+++.=+-++++..
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v 189 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTM 189 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeecee
Confidence 6667888889999999999998765554444 344444455554443
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.092 Score=63.74 Aligned_cols=71 Identities=27% Similarity=0.389 Sum_probs=57.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEE---ECCCCCEEEEEeCCCeEEEEec
Q 003279 551 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR---FSPSLSRLATSSADRTVRVWDT 623 (834)
Q Consensus 551 H~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~---fspdg~~Latgs~Dg~I~IWDl 623 (834)
-.++|++++|+.||++++.|-.+|.|.+||+..++..+.+..|..+++.+- +..++..++++...|. +|.+
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 357899999999999999999999999999999999998887777655544 4445667888887776 5554
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.4 Score=53.97 Aligned_cols=146 Identities=11% Similarity=0.017 Sum_probs=83.1
Q ss_pred CCeeEEEEecCCCEEEEEE-----------cCC-eEEEEECCC--Ce--EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCe
Q 003279 680 SGATQMRFQPRLGRILAAA-----------IEN-YISILDVET--QV--CRLKLQGHKNQVHSVCWNTSGEYLASVSDEL 743 (834)
Q Consensus 680 ~~i~~l~~sp~g~~ll~~s-----------~dg-~I~iwDl~t--~~--~~~~l~~h~~~I~sl~~spdg~~LasgsDg~ 743 (834)
.....++|.++|+.+++-. ..+ .|.+++-.+ ++ ....+.......+.+++.+++ +++ +....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 3456677777777555542 123 677776543 22 233343334456889999998 444 44334
Q ss_pred EEEE-EcCCCC----Cce-eEEEeecC----CCceEEEEEeCCCCEEEEEEcC-------------------CeEEEEEC
Q 003279 744 VRVW-SIGSGS----KGE-CIHELSCT----GNKFHSCVFHPTFPSLLVIGCY-------------------ETLELWNM 794 (834)
Q Consensus 744 I~Iw-Dl~s~~----~~~-~i~~~~~~----~~~I~svafspdg~~L~sgs~d-------------------g~I~Iwdl 794 (834)
|..| |..... ..+ .+..+... ......++|.|||.+.++.+.. +.|..++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 4444 543221 112 22223222 3447789999999866554421 35666676
Q ss_pred CCCeEEEeccCCCCeEEEEEeCCCCEEEEEecC
Q 003279 795 TENKTLTLSAHDKLVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 795 ~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~D 827 (834)
.+++...+...-.....++|+++|.++++-..+
T Consensus 172 dg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 172 DGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 666554443334456789999999888765433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=95.48 E-value=6.3 Score=48.90 Aligned_cols=177 Identities=16% Similarity=0.197 Sum_probs=98.5
Q ss_pred cCCCCeEEEEEC---C----CCCEEEEEeCCCeEEEEecC------CCC--------ceeeeecc---CCCCeEEEEEcc
Q 003279 592 EHTQWITDVRFS---P----SLSRLATSSADRTVRVWDTE------NPD--------YSLRTFTG---HSTTVMSLDFHP 647 (834)
Q Consensus 592 ~h~~~I~~l~fs---p----dg~~Latgs~Dg~I~IWDl~------s~~--------~~i~~~~~---h~~~V~sl~fsp 647 (834)
....+|..|+|. . ..++|++- ....+.|+... ... .++..+.. ...+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456788888887 2 12355544 44556666621 100 01122221 234567788888
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEE
Q 003279 648 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSV 727 (834)
Q Consensus 648 dg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl 727 (834)
....-||+.+..|...|||+....... .... -+.....|.| ++|... .+....|
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~-----~~~~----------~~~~~~~gsi-~~d~~e----------~s~w~rI 209 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRK-----SSNL----------RLSRNISGSI-IFDPEE----------LSNWKRI 209 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccC-----Ccce----------eeccCCCccc-cCCCcc----------cCcceee
Confidence 777778888888888888882111100 1111 1111112333 233221 1445678
Q ss_pred EEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 728 CWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 728 ~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
.|.++...|++++...+.++|+++......+ ........|..+.-++.....+..-....|...++..
T Consensus 210 ~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l-~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 210 LWVSDSNRLLVCNRSKLMLIDFESNWQTEYL-VTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred EecCCCCEEEEEcCCceEEEECCCCCccchh-ccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 9998888899999888999999987442221 2223456688888777732222222334677777766
|
These proteins are found in fungi. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.47 Score=56.23 Aligned_cols=184 Identities=9% Similarity=0.005 Sum_probs=89.6
Q ss_pred CCCCEEEEEeCCC------cEEEEeCCCCeEEEE--eccCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEecCCCCc
Q 003279 562 PDGKLLATGGHDK------KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDY 628 (834)
Q Consensus 562 pdg~~Lasgs~Dg------~I~IWd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~D-----g~I~IWDl~s~~~ 628 (834)
.++.+++.||.++ .+..||..+.+-... +.........+.+ ++.+++.|+.+ ..+.+||..+..+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3456667776542 577888877554321 1111111222222 56777888765 3577888887654
Q ss_pred eeeeeccCCCCeEEEEEccCCCcEEEEEeCC------CcEEEEECCCCceeeEeecCCC--eeEEEEecCCCEEEEEEcC
Q 003279 629 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 629 ~i~~~~~h~~~V~sl~fspdg~~llasgs~D------g~I~lwDl~s~~~i~~~~~~~~--i~~l~~sp~g~~ll~~s~d 700 (834)
....-..+...-.+++.. ++.+++.|+.+ ..+..||+.+++....-....+ ..++ ...++..+++|+.+
T Consensus 371 ~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~ 447 (534)
T PHA03098 371 REEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGIS 447 (534)
T ss_pred eeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCcc
Confidence 221111111111122222 24566666632 3588899887654432221111 1222 22344555666542
Q ss_pred --------CeEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCC
Q 003279 701 --------NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSG 752 (834)
Q Consensus 701 --------g~I~iwDl~t~~~~~~--l~~h~~~I~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~ 752 (834)
..+.+||..+.+-... +.........+.+ ++++++.|+ + +.|.+||..+.
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 2388899887643221 1111111112222 566666665 2 26777877664
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=95.38 E-value=3.9 Score=44.34 Aligned_cols=165 Identities=9% Similarity=0.090 Sum_probs=96.1
Q ss_pred cEEEEECCCCceeeEeecCC-------CeeEEEEecCC-----CEEEEEEc-CCeEEEEECCCCeEEEEEeCC-------
Q 003279 661 EIRYWSINNGSCAGVFKCQS-------GATQMRFQPRL-----GRILAAAI-ENYISILDVETQVCRLKLQGH------- 720 (834)
Q Consensus 661 ~I~lwDl~s~~~i~~~~~~~-------~i~~l~~sp~g-----~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h------- 720 (834)
.|.+||+.+++.++.+..+. .+..+.+.... .+++.+.. .+.|.|||+.+++..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 67889999999888877533 35677777632 34444444 368999999998776555432
Q ss_pred ------------CCCEEEEEEcC---CCCEEEEEeCCeEEEEEcCC-----CCCc------eeEEEeecCCCceEEEEEe
Q 003279 721 ------------KNQVHSVCWNT---SGEYLASVSDELVRVWSIGS-----GSKG------ECIHELSCTGNKFHSCVFH 774 (834)
Q Consensus 721 ------------~~~I~sl~~sp---dg~~LasgsDg~I~IwDl~s-----~~~~------~~i~~~~~~~~~I~svafs 774 (834)
...+..++.+| +++.|+...=...++|.+.+ .... ..+..+-........++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 12356666655 66777776622233444332 1110 1122222222456678899
Q ss_pred CCCCEEEEEEcCCeEEEEECCC-----Ce-EEEeccC-CCCeEEEEEeC--CCCEEEEEe
Q 003279 775 PTFPSLLVIGCYETLELWNMTE-----NK-TLTLSAH-DKLVSSLAAST--VNGMVASAS 825 (834)
Q Consensus 775 pdg~~L~sgs~dg~I~Iwdl~~-----~~-~~~l~~h-~~~V~~lafsp--dg~~LaSgs 825 (834)
++|..+++--..+.|..|+..+ .- .+..... -..+.++.+.+ +|.+.+.+.
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 9998777777888999999887 21 2222222 35788999999 777666553
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.33 E-value=2.9 Score=44.17 Aligned_cols=208 Identities=12% Similarity=0.070 Sum_probs=128.0
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEe
Q 003279 597 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 676 (834)
Q Consensus 597 I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~ 676 (834)
-..++-.+||..-+++...+.|--.|..+++. ...-.+....-..|..-||+...+ +....-|.-+|-++.+..+ |
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev-~~ypLg~Ga~Phgiv~gpdg~~Wi--td~~~aI~R~dpkt~evt~-f 139 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEV-ETYPLGSGASPHGIVVGPDGSAWI--TDTGLAIGRLDPKTLEVTR-F 139 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCce-EEEecCCCCCCceEEECCCCCeeE--ecCcceeEEecCcccceEE-e
Confidence 45677788998899998888888888888764 333344555667788888887555 3222256666766554332 2
Q ss_pred ec-----CCCeeEEEEecCCCEEEEEEcC---------CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C
Q 003279 677 KC-----QSGATQMRFQPRLGRILAAAIE---------NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D 741 (834)
Q Consensus 677 ~~-----~~~i~~l~~sp~g~~ll~~s~d---------g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-D 741 (834)
.. ........|.+.|...+++... +.|++|+.. .....+.||..|||...++.- +
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyaslag 209 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLAG 209 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEeccc
Confidence 21 4457888999998888877632 234444433 233457889999999887766 7
Q ss_pred CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--EeccCCCCeEEEEEeCCCC
Q 003279 742 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNG 819 (834)
Q Consensus 742 g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~--~l~~h~~~V~~lafspdg~ 819 (834)
+.|-..|..++.. +.+..-.........+--+|.+..-++....+.+..||-...... .+.+....-.++.....++
T Consensus 210 naiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~gr 288 (353)
T COG4257 210 NAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGR 288 (353)
T ss_pred cceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCc
Confidence 7777777766522 222221221233445556677776667666778888877655443 3333333444444443333
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.04 Score=56.20 Aligned_cols=138 Identities=11% Similarity=0.019 Sum_probs=75.5
Q ss_pred EEeCCCcEEEEeCCCCeEEEE-eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEcc
Q 003279 569 TGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 647 (834)
Q Consensus 569 sgs~Dg~I~IWd~~t~~~~~~-l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fsp 647 (834)
..+.|+.|.-+++...+.... -..|...-..+. -+..+++|+.+|.|++|+..-.......+..-...|.++.-.-
T Consensus 35 ~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~---~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~ 111 (238)
T KOG2444|consen 35 ATSADGLVRERKVRKHKESCRSERFIDEGQRVVT---ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNG 111 (238)
T ss_pred cccCCcccccchhhhhhhhhhhhhhhhcceeecc---cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccc
Confidence 344567777666554322211 111222211122 3467999999999999998743322222222333444443333
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceeeEeecCC--CeeEEEEecCCCEEEEE--EcCCeEEEEECC
Q 003279 648 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRILAA--AIENYISILDVE 709 (834)
Q Consensus 648 dg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~--~i~~l~~sp~g~~ll~~--s~dg~I~iwDl~ 709 (834)
+...+.+++..||.|+.|++.-++.+.....+. .+........++.+..+ +.+..++.|++.
T Consensus 112 ~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 112 RDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 333488899999999999999887776655433 23333333333444444 445555555554
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.16 Score=61.98 Aligned_cols=144 Identities=13% Similarity=0.071 Sum_probs=96.2
Q ss_pred CeEEEEECCCCCEEEEE--eCCCeEEEEecCCCCcee----eee------ccCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 003279 596 WITDVRFSPSLSRLATS--SADRTVRVWDTENPDYSL----RTF------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 663 (834)
Q Consensus 596 ~I~~l~fspdg~~Latg--s~Dg~I~IWDl~s~~~~i----~~~------~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 663 (834)
+|..+...+|++..++. +.+-.|..||+++-.... ..+ ......+.++.|.|.-....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45556666676654443 344589999987532111 111 112345667889987666677888899999
Q ss_pred EEECCCC-ceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC----CCCCEEEEEEcCCCCEEEE
Q 003279 664 YWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLAS 738 (834)
Q Consensus 664 lwDl~s~-~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~----h~~~I~sl~~spdg~~Las 738 (834)
+..+..- ..+..+......++++|+|.|+.+++|-..|++.-|...-. ....+.+ ....|.||+|-..-.++++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 8877543 23334555677999999999999999999999998865432 2222221 2468999999888777776
Q ss_pred Ee
Q 003279 739 VS 740 (834)
Q Consensus 739 gs 740 (834)
-+
T Consensus 261 y~ 262 (1405)
T KOG3630|consen 261 YG 262 (1405)
T ss_pred ec
Confidence 54
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.07 E-value=1.3 Score=53.94 Aligned_cols=27 Identities=33% Similarity=0.405 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVL 578 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~I 578 (834)
.-.|..|.++++|++||..|..|.+.+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 346889999999999999988664444
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=94.85 E-value=11 Score=44.38 Aligned_cols=246 Identities=11% Similarity=0.087 Sum_probs=121.2
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCe---EEEEeccC-CCCeEEEEECCCC-CEEEEEeCCCeEEEEecCCCCceeeeecc
Q 003279 561 SPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEH-TQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTG 635 (834)
Q Consensus 561 Spdg~~Lasgs~Dg~I~IWd~~t~~---~~~~l~~h-~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~s~~~~i~~~~~ 635 (834)
..++..++.+..+|.++...+.... .+..+ +. ....+++++..++ .+|+.||.-|.=.++.+......+.....
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~ 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc
Confidence 4567789999999999888766433 12222 22 4566777777654 47888877555444444433332222223
Q ss_pred CCCCeEEEEEccC---CC-------cEEEEEe--CCCcEEEEECCCC---ceeeEeecCCCeeEEEEecC----CCEEEE
Q 003279 636 HSTTVMSLDFHPS---KE-------DLLCSCD--NNSEIRYWSINNG---SCAGVFKCQSGATQMRFQPR----LGRILA 696 (834)
Q Consensus 636 h~~~V~sl~fspd---g~-------~llasgs--~Dg~I~lwDl~s~---~~i~~~~~~~~i~~l~~sp~----g~~ll~ 696 (834)
.-++|.++++.+. +. .++++++ .+|.+++..-.-+ .........+ +..+-..+. +.+++.
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~ 376 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVL 376 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ceEEEEeeecCCCceEEEE
Confidence 4578888888532 12 4555544 4677877643211 1112222222 433322222 345555
Q ss_pred EEcCCeEEEEECC---CCeEEEEEe--C---CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeec-CCCc
Q 003279 697 AAIENYISILDVE---TQVCRLKLQ--G---HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC-TGNK 767 (834)
Q Consensus 697 ~s~dg~I~iwDl~---t~~~~~~l~--~---h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~-~~~~ 767 (834)
+..+ .-.++.+. ..+.+..+. + ....+.+-.+. +..++=.....|++.+.... ........ ....
T Consensus 377 S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~---~~~~~w~~~~~~~ 450 (504)
T PF10433_consen 377 SFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDG---KLTQEWKPPAGSI 450 (504)
T ss_dssp EESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSST---SEEEEEE-TTS--
T ss_pred EcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCC---eEEEEEeCCCCCe
Confidence 5544 44444442 333332221 1 11223333332 55566566667899987665 34444322 3444
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-Eec-----cCCCCeEEEEEeC
Q 003279 768 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-----AHDKLVSSLAAST 816 (834)
Q Consensus 768 I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~-----~h~~~V~~lafsp 816 (834)
|.+++.. +..++++..++.+.++.+...... ... .....|.|+...|
T Consensus 451 I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 451 IVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp -SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 5444444 356888888888999988877665 111 2578899988776
|
... |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=94.82 E-value=8.7 Score=43.13 Aligned_cols=187 Identities=5% Similarity=-0.044 Sum_probs=100.8
Q ss_pred CEEEEEeCCCeEEEEecCCCCceeeeeccC-CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCC--Cee
Q 003279 607 SRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GAT 683 (834)
Q Consensus 607 ~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h-~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~--~i~ 683 (834)
..++++..+|.|.-.|..++.......... ...+.+-.+..+|+ ++.++.++.++.+|.++|+.+..+.... .+.
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe--EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 345555788888888888766422111111 12233333333554 5567778899999999999999888766 111
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC---CCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeE
Q 003279 684 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK---NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECI 758 (834)
Q Consensus 684 ~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~---~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i 758 (834)
...+. ....++..+.++.+...|..+++.+....... ..+..-....++..++... ++.+.-+|..++. .+
T Consensus 147 ~~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~---~~ 222 (370)
T COG1520 147 SPPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGT---LK 222 (370)
T ss_pred cCcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCc---Ee
Confidence 22222 23445555578999999999998877654322 1111111122333333333 3456666666653 22
Q ss_pred EEe----ecCCC------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 759 HEL----SCTGN------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 759 ~~~----~~~~~------~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
... ..... .+..-...-++ .++.++.++.+...|..+++.+
T Consensus 223 w~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~ 273 (370)
T COG1520 223 WSQKVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELI 273 (370)
T ss_pred eeeeeecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceE
Confidence 221 10000 01111111122 2466677777888888888877
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.81 E-value=3.4 Score=50.46 Aligned_cols=94 Identities=14% Similarity=0.171 Sum_probs=55.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceee
Q 003279 595 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 674 (834)
Q Consensus 595 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~ 674 (834)
-.|..|.++++|++|+..|..| |.|..+...-.....+.+....|.|=.+.-+ ..++ ..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~-~~~~-~~------------------ 143 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVD-ERFF-TS------------------ 143 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEec-hhhc-cC------------------
Confidence 3588899999999999988866 4444443211001122222233333333221 2222 11
Q ss_pred EeecCCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCC
Q 003279 675 VFKCQSGATQMRFQPR---LGRILAAAIENYISILDVETQ 711 (834)
Q Consensus 675 ~~~~~~~i~~l~~sp~---g~~ll~~s~dg~I~iwDl~t~ 711 (834)
.....|..+.|+|. +.+|++-+.|+.|++||+...
T Consensus 144 --~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 --NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred --CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 11245778888886 578999999999999998754
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.79 E-value=15 Score=45.57 Aligned_cols=163 Identities=11% Similarity=0.103 Sum_probs=85.4
Q ss_pred EEEEECCCCceeeEeecCC-----CeeEEEEecCCCE-E-EEEEc-----------CCeEEEEECCC-CeEEEEEe--CC
Q 003279 662 IRYWSINNGSCAGVFKCQS-----GATQMRFQPRLGR-I-LAAAI-----------ENYISILDVET-QVCRLKLQ--GH 720 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~~~~-----~i~~l~~sp~g~~-l-l~~s~-----------dg~I~iwDl~t-~~~~~~l~--~h 720 (834)
|+++|..+++.+..+.... .+..+.|+..... + +++.. +|.++.|++-. ++.+.-+. .-
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 5566666665555554422 2444555543332 3 33332 34466776533 33222221 12
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEE--EEECCC
Q 003279 721 KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLE--LWNMTE 796 (834)
Q Consensus 721 ~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~--~~~~~~I~svafspdg~~L~sgs~dg~I~--Iwdl~~ 796 (834)
.+.|. ++.|...++.+|-...+++||+.... .++.. ..-...|..+.+ .+..|++|.....|. .|+-.+
T Consensus 935 ~~~v~--Ai~~f~~~~LagvG~~l~~YdlG~K~---lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~ 1007 (1205)
T KOG1898|consen 935 PGPVG--AICPFQGRVLAGVGRFLRLYDLGKKK---LLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRRED 1007 (1205)
T ss_pred Cccce--EEeccCCEEEEecccEEEEeeCChHH---HHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCC
Confidence 23443 44566668888778899999998752 22221 112334555544 345788887766554 455555
Q ss_pred CeEEEecc--CCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 797 NKTLTLSA--HDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 797 ~~~~~l~~--h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
+..+.+.. ....|+++.+- |...+|.+..=|.+.+
T Consensus 1008 n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~ 1044 (1205)
T KOG1898|consen 1008 NQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAV 1044 (1205)
T ss_pred CeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEE
Confidence 65554432 34456666654 3445666665565544
|
|
| >PRK10350 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.13 Score=47.03 Aligned_cols=28 Identities=32% Similarity=0.296 Sum_probs=14.4
Q ss_pred ccccchhhhhh-hHHHHHHHHHHHHHHHH
Q 003279 68 NEKHSESAASY-IESQVIKAREQQQQQQQ 95 (834)
Q Consensus 68 ~~~~s~~~~~y-~~~~q~~~~~qqqqqqq 95 (834)
+..++.....| +.+++..+.+.|.+|++
T Consensus 21 N~~NNPnqpGY~ipSQQRmQtqMQ~QQ~q 49 (145)
T PRK10350 21 NTLNNPNQPGYQIPSQQRMQTQMQTQQIQ 49 (145)
T ss_pred hccCCCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 44455556668 66655544444444333
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=94.52 E-value=17 Score=45.23 Aligned_cols=158 Identities=18% Similarity=0.193 Sum_probs=96.8
Q ss_pred CCCCCeEEEEEc---C----CCCEEEEEeCCCcEEEEeCC------C---------CeEEEEec---cCCCCeEEEEECC
Q 003279 550 ASTSKVESCHFS---P----DGKLLATGGHDKKAVLWCTE------S---------FTVKSTLE---EHTQWITDVRFSP 604 (834)
Q Consensus 550 gH~~~V~sl~fS---p----dg~~Lasgs~Dg~I~IWd~~------t---------~~~~~~l~---~h~~~I~~l~fsp 604 (834)
.-..+|..|+|. . ..++|++=. ...+.|+... . ..++..+. ....+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 345678889888 2 224555544 4566676611 1 12333333 1234678999998
Q ss_pred -CCCEEEEEeCCCeEEEEecCCCC----ceeeeeccCC----------CCeEEEEEccCCCcEEEEEeCCCcEEEEECCC
Q 003279 605 -SLSRLATSSADRTVRVWDTENPD----YSLRTFTGHS----------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 669 (834)
Q Consensus 605 -dg~~Latgs~Dg~I~IWDl~s~~----~~i~~~~~h~----------~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s 669 (834)
+...||+....|...|||+.... ..+.....+. +.-..|.|.++...+| .++ ...+.++|+++
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL-v~~-r~~l~~~d~~~ 233 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL-VCN-RSKLMLIDFES 233 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEE-EEc-CCceEEEECCC
Confidence 46689999999999999992111 1111111112 2234788887766666 444 56799999998
Q ss_pred Cceee---EeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003279 670 GSCAG---VFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 710 (834)
Q Consensus 670 ~~~i~---~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t 710 (834)
..... .......|..+.-++.....+..-....|..+|+..
T Consensus 234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred CCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 76633 222345688888888744334444557888888877
|
These proteins are found in fungi. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=11 Score=42.86 Aligned_cols=110 Identities=12% Similarity=0.007 Sum_probs=65.7
Q ss_pred CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe-----EEEEEeC--CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003279 679 QSGATQMRFQPRLGRILAAAIENYISILDVETQV-----CRLKLQG--HKNQVHSVCWNTSGEYLASVSDELVRVWSIGS 751 (834)
Q Consensus 679 ~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~-----~~~~l~~--h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s 751 (834)
...+..+.+.+++..++++ ..|.+..- ...+. ....... ....+.++.|.+++..+++|..|.+.+.. ..
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~S-~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~ 356 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLYVS-KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DG 356 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEEEe-cCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CC
Confidence 4568888898887766555 55554443 33332 1222221 12358899999999988888888666553 44
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003279 752 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 792 (834)
Q Consensus 752 ~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iw 792 (834)
++..........-...++.+.|.++++ .++.+.+|.|.-|
T Consensus 357 G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il~~ 396 (398)
T PLN00033 357 GKSWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLLRY 396 (398)
T ss_pred CcceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEEEe
Confidence 432222221222345678888877655 6667777776554
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=1 Score=52.74 Aligned_cols=140 Identities=7% Similarity=-0.027 Sum_probs=68.2
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCeEEEE--eccCCCCeEEEEECCCCCEEEEEeCC--CeEEEEecCCCCceeeee
Q 003279 563 DGKLLATGGHDK-----KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSLRTF 633 (834)
Q Consensus 563 dg~~Lasgs~Dg-----~I~IWd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~D--g~I~IWDl~s~~~~i~~~ 633 (834)
++.++++||.++ .+..||..+.+-... +.........+. -++.+.+.|+.+ ..+..||..++.+. ..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~--~~ 346 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWV--NM 346 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEE--EC
Confidence 345666776543 567788776543322 211111122222 367777787764 35788887765432 11
Q ss_pred ccCCCCeE--EEEEccCCCcEEEEEeCCC---cEEEEECCCCceeeEeecCCC--eeEEEEecCCCEEEEEEcCCeEEEE
Q 003279 634 TGHSTTVM--SLDFHPSKEDLLCSCDNNS---EIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIENYISIL 706 (834)
Q Consensus 634 ~~h~~~V~--sl~fspdg~~llasgs~Dg---~I~lwDl~s~~~i~~~~~~~~--i~~l~~sp~g~~ll~~s~dg~I~iw 706 (834)
..-..+.. +++.. + +.+.+.|+.++ .+..||.++..-...-....+ -.+++ .-++..+++| |.+.+|
T Consensus 347 ~~l~~~r~~~~~~~~-~-g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G---G~~e~y 420 (480)
T PHA02790 347 PSLLKPRCNPAVASI-N-NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG---RNAEFY 420 (480)
T ss_pred CCCCCCCcccEEEEE-C-CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC---CceEEe
Confidence 11111111 22221 2 45666776543 467888877654432221111 11222 2333444444 457788
Q ss_pred ECCCCe
Q 003279 707 DVETQV 712 (834)
Q Consensus 707 Dl~t~~ 712 (834)
|.++.+
T Consensus 421 dp~~~~ 426 (480)
T PHA02790 421 CESSNT 426 (480)
T ss_pred cCCCCc
Confidence 887653
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.40 E-value=1.4 Score=52.43 Aligned_cols=123 Identities=12% Similarity=0.125 Sum_probs=79.8
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-cCCCCeEEEEEC--CCCCEEEEEeCCCeEE
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFS--PSLSRLATSSADRTVR 619 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~I~~l~fs--pdg~~Latgs~Dg~I~ 619 (834)
.....+...-....-+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|. |++..+++.+....|.
T Consensus 20 ~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~ 99 (631)
T PF12234_consen 20 LLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVL 99 (631)
T ss_pred EEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEE
Confidence 3344444444556666666666655555555689999999887554332 457789999996 5888999999999999
Q ss_pred EEecC-----C--CC-ceeee--eccCC-CCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 003279 620 VWDTE-----N--PD-YSLRT--FTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 668 (834)
Q Consensus 620 IWDl~-----s--~~-~~i~~--~~~h~-~~V~sl~fspdg~~llasgs~Dg~I~lwDl~ 668 (834)
+|--. . +. ..++. +..|+ .+|.+..|.++|. ++ +|+ ++.+.|+|-.
T Consensus 100 l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-Lv-V~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 100 LYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LV-VGS-GNQLFVFDKW 156 (631)
T ss_pred EEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EE-EEe-CCEEEEECCC
Confidence 98532 1 11 11221 23343 5789999999875 33 333 4578887643
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.31 E-value=16 Score=46.01 Aligned_cols=169 Identities=14% Similarity=0.103 Sum_probs=95.0
Q ss_pred CcEEEEECCCCceeeEeec--CCCeeEEEEec---------CCCEEEEEEc---------CCeEEEEECCC-----Ce--
Q 003279 660 SEIRYWSINNGSCAGVFKC--QSGATQMRFQP---------RLGRILAAAI---------ENYISILDVET-----QV-- 712 (834)
Q Consensus 660 g~I~lwDl~s~~~i~~~~~--~~~i~~l~~sp---------~g~~ll~~s~---------dg~I~iwDl~t-----~~-- 712 (834)
..|.+.+..+++.+..+.. ...+.+++... ...++++|.. -|.++|||+-. ++
T Consensus 1004 f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~ 1083 (1366)
T KOG1896|consen 1004 FSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPF 1083 (1366)
T ss_pred ceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCc
Confidence 3556666666665554443 33344444322 1346776654 47899998632 21
Q ss_pred ---EEEEE--eCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003279 713 ---CRLKL--QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 787 (834)
Q Consensus 713 ---~~~~l--~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg 787 (834)
.++.+ +.-++.|..+|=- +| +|+++..-+|.||++........+..+ .-.+......--.++|+.+.-..
T Consensus 1084 t~~KlKel~~eE~KGtVsavceV-~G-~l~~~~GqKI~v~~l~r~~~ligVaFi---D~~~yv~s~~~vknlIl~gDV~k 1158 (1366)
T KOG1896|consen 1084 TKNKLKELYIEEQKGTVSAVCEV-RG-HLLSSQGQKIIVRKLDRDSELIGVAFI---DLPLYVHSMKVVKNLILAGDVMK 1158 (1366)
T ss_pred ccceeeeeehhhcccceEEEEEe-cc-EEEEccCcEEEEEEeccCCcceeeEEe---ccceeEEehhhhhhheehhhhhh
Confidence 11111 2345677666532 34 466666778999999544322222222 22333333333456677777777
Q ss_pred eEEEEECCCC-eEEEec---cCCCCeEEEEEeCCCC--EEEEEecCCcEEEe
Q 003279 788 TLELWNMTEN-KTLTLS---AHDKLVSSLAASTVNG--MVASASHDKCVKIW 833 (834)
Q Consensus 788 ~I~Iwdl~~~-~~~~l~---~h~~~V~~lafspdg~--~LaSgs~DG~I~IW 833 (834)
.|.+.-.... ..+.+. ...-.+.++.|--||. +++++..|+.|++|
T Consensus 1159 sisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1159 SISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVY 1210 (1366)
T ss_pred ceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEE
Confidence 7776655443 222222 2334678888888876 67788899999886
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=94.28 E-value=4.9 Score=44.56 Aligned_cols=145 Identities=12% Similarity=0.103 Sum_probs=69.2
Q ss_pred CCCEEEEEeCC-------CcEEEEeCCCCeEEEEec--c-CCC---CeEEEEECCCCCEEEEEeCC-----CeEEEEecC
Q 003279 563 DGKLLATGGHD-------KKAVLWCTESFTVKSTLE--E-HTQ---WITDVRFSPSLSRLATSSAD-----RTVRVWDTE 624 (834)
Q Consensus 563 dg~~Lasgs~D-------g~I~IWd~~t~~~~~~l~--~-h~~---~I~~l~fspdg~~Latgs~D-----g~I~IWDl~ 624 (834)
++++++.|+.+ ..+.+||+.+.+-...-. . ... ....+.+ ++++++.|+.+ ..|.+||+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 35566666653 357888887754332111 0 000 1222333 45677777753 357888988
Q ss_pred CCCceee-eec----cCCCCeEEEEEccCCCcEEEEEeCC-----------CcEEEEECCCCceeeEeecC----CC-ee
Q 003279 625 NPDYSLR-TFT----GHSTTVMSLDFHPSKEDLLCSCDNN-----------SEIRYWSINNGSCAGVFKCQ----SG-AT 683 (834)
Q Consensus 625 s~~~~i~-~~~----~h~~~V~sl~fspdg~~llasgs~D-----------g~I~lwDl~s~~~i~~~~~~----~~-i~ 683 (834)
+...... ... .....-.+++.. + +.+++.|+.+ ..|.+||..+.+-...-... .. -.
T Consensus 110 t~~W~~~~~~~~~~~p~~R~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~ 187 (341)
T PLN02153 110 KNEWTFLTKLDEEGGPEARTFHSMASD-E-NHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGA 187 (341)
T ss_pred CCEEEEeccCCCCCCCCCceeeEEEEE-C-CEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcc
Confidence 7554211 110 001111122222 2 3466666643 24778898876543321111 11 11
Q ss_pred EEEEecCCCEEEEEEc-------------CCeEEEEECCCCe
Q 003279 684 QMRFQPRLGRILAAAI-------------ENYISILDVETQV 712 (834)
Q Consensus 684 ~l~~sp~g~~ll~~s~-------------dg~I~iwDl~t~~ 712 (834)
+++. -+++.+++++. .+.|.+||+.+.+
T Consensus 188 ~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~ 228 (341)
T PLN02153 188 GFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK 228 (341)
T ss_pred eEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence 2222 34455555442 1468889988764
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.13 Score=39.54 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=29.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 585 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~ 585 (834)
...|.+++|+|...+||.|+.||.|.||.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 356999999999999999999999999998 443
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=94.15 E-value=11 Score=45.16 Aligned_cols=197 Identities=15% Similarity=0.164 Sum_probs=98.8
Q ss_pred EECCCCCEEEEEeCCCeEEEEecCC-CCceeeeeccCCCCeEEEEEccC--CCcEEEEE-eCCCcEEEEECCCC------
Q 003279 601 RFSPSLSRLATSSADRTVRVWDTEN-PDYSLRTFTGHSTTVMSLDFHPS--KEDLLCSC-DNNSEIRYWSINNG------ 670 (834)
Q Consensus 601 ~fspdg~~Latgs~Dg~I~IWDl~s-~~~~i~~~~~h~~~V~sl~fspd--g~~llasg-s~Dg~I~lwDl~s~------ 670 (834)
.++|+...+-.|=....|.-|=+.. ++.........+..|.|++.... +..+.+.| ...+.-++-.+..+
T Consensus 34 ~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~ 113 (670)
T PF10395_consen 34 DFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTED 113 (670)
T ss_pred ccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccc
Confidence 5566666655554444554444432 22222222234455666665322 12344444 32332333322221
Q ss_pred -------ceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC--eEEEEEeC-CCCCEEEEEEcC------CCC
Q 003279 671 -------SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ--VCRLKLQG-HKNQVHSVCWNT------SGE 734 (834)
Q Consensus 671 -------~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~--~~~~~l~~-h~~~I~sl~~sp------dg~ 734 (834)
.....++....+..+.|..++..+++....|.|.+||...+ +.+..+.. +...+..-+|-+ ...
T Consensus 114 ~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~ 193 (670)
T PF10395_consen 114 GTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKD 193 (670)
T ss_pred cccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCc
Confidence 12234456788999999999999999999999999999332 21112221 222121112322 123
Q ss_pred EEEE-Ee-CC---eEEEEEcCCCCCceeEEEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 735 YLAS-VS-DE---LVRVWSIGSGSKGECIHELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 735 ~Las-gs-Dg---~I~IwDl~s~~~~~~i~~~~---~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
++++ +. ++ .++++.+.... ..+.++. .+......+.|.-....|+.- .++.|.+|++..-+..
T Consensus 194 ~ll~v~~~~~~k~~ykL~~l~~~~--~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~ 264 (670)
T PF10395_consen 194 LLLTVSQLSNSKLSYKLISLSNES--SSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQ 264 (670)
T ss_pred eEEEEEEcCCCcEEEEEEEeccCC--cceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEE
Confidence 4333 33 22 78888882211 2222332 222333333343333334443 6779999999776654
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.08 E-value=5.8 Score=47.27 Aligned_cols=195 Identities=12% Similarity=0.079 Sum_probs=94.2
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceee--eeccCCCCeEEEEEccCCCc
Q 003279 574 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR--TFTGHSTTVMSLDFHPSKED 651 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~--~~~~h~~~V~sl~fspdg~~ 651 (834)
-.|+||++. |..+..+.-....+..+.|+.+. .|++...+|+++||++........ -+......|..+.|..+|
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence 457888754 55554443333478899999765 566667999999999875332111 011222334444444443
Q ss_pred EEEEEeCCCcEEEE-ECCCCceeeEeec-C-CC--eeEEEEecCCC---EEEEEEcCCeEEEEECCCC-eEEEEEeCCCC
Q 003279 652 LLCSCDNNSEIRYW-SINNGSCAGVFKC-Q-SG--ATQMRFQPRLG---RILAAAIENYISILDVETQ-VCRLKLQGHKN 722 (834)
Q Consensus 652 llasgs~Dg~I~lw-Dl~s~~~i~~~~~-~-~~--i~~l~~sp~g~---~ll~~s~dg~I~iwDl~t~-~~~~~l~~h~~ 722 (834)
+++-. .+|.+.+. +... ...+..+. + .. ..|....+++. .++-....-...++-.... .....+.....
T Consensus 140 Vavlt-~~g~v~~i~~~~~-~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 140 VAVLT-VSGQVILINGVEE-PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNS 217 (829)
T ss_pred eEEEe-cCCcEEEEcCCCc-chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCc
Confidence 33222 24444433 3322 12222211 0 11 12222222211 1111111111112222211 11122222235
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCC-ceEEEEEeCCC
Q 003279 723 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN-KFHSCVFHPTF 777 (834)
Q Consensus 723 ~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~-~I~svafspdg 777 (834)
.+..+..||+.++|+--. +|.|.+-+++.. +++.++.+... ....++|..+.
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~---~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLS---QILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchh---hhhhccCCCCCCchHhceeecCC
Confidence 677889999999999877 888888887765 44444443221 12245554443
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=93.99 E-value=8 Score=45.09 Aligned_cols=192 Identities=6% Similarity=-0.021 Sum_probs=91.1
Q ss_pred CCCEEEEEeCC-------CeEEEEecCCCCceeeeecc-CCC--Ce-EEEEEccCCCcEEEEEeCC-----CcEEEEECC
Q 003279 605 SLSRLATSSAD-------RTVRVWDTENPDYSLRTFTG-HST--TV-MSLDFHPSKEDLLCSCDNN-----SEIRYWSIN 668 (834)
Q Consensus 605 dg~~Latgs~D-------g~I~IWDl~s~~~~i~~~~~-h~~--~V-~sl~fspdg~~llasgs~D-----g~I~lwDl~ 668 (834)
++.+++.|+.+ ..+.+||+.+..+......+ ... .. .+++.. +..+++.|+.+ ..+.+||+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~~ 252 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDTT 252 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE--CCEEEEECCCCCCCCCccEEEEECC
Confidence 34566666643 24778888775543211111 000 01 112222 34566677654 368889998
Q ss_pred CCceeeEeec---CCC--eeEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEEEEe-----CCCCCEEEEEEcCCC
Q 003279 669 NGSCAGVFKC---QSG--ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLKLQ-----GHKNQVHSVCWNTSG 733 (834)
Q Consensus 669 s~~~i~~~~~---~~~--i~~l~~sp~g~~ll~~s~d-----g~I~iwDl~t~~~~~~l~-----~h~~~I~sl~~spdg 733 (834)
+.+....... ..+ ..+++ .-++..++.|+.+ ..+..||+.+.+-...-. ..... .+++. -++
T Consensus 253 t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~-~~~~~-~~g 329 (470)
T PLN02193 253 TNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG-AGLEV-VQG 329 (470)
T ss_pred CCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCC-cEEEE-ECC
Confidence 7654432221 111 12222 2344556666653 347788887754321110 01111 12222 256
Q ss_pred CEEEEEe-C----CeEEEEEcCCCCCceeEEEee-cCCCceEEEEEeCCCCEEEEEEcC--------------CeEEEEE
Q 003279 734 EYLASVS-D----ELVRVWSIGSGSKGECIHELS-CTGNKFHSCVFHPTFPSLLVIGCY--------------ETLELWN 793 (834)
Q Consensus 734 ~~Lasgs-D----g~I~IwDl~s~~~~~~i~~~~-~~~~~I~svafspdg~~L~sgs~d--------------g~I~Iwd 793 (834)
++++.++ + ..+.+||+.+..- ..+.... .........+..-++..++.|+.. +.+.+||
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~W-~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D 408 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDKW-TQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALD 408 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCEE-EEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEE
Confidence 6666655 4 4689999987621 1111110 011111112223345556666642 2588999
Q ss_pred CCCCeEEEe
Q 003279 794 MTENKTLTL 802 (834)
Q Consensus 794 l~~~~~~~l 802 (834)
+.+.+...+
T Consensus 409 ~~t~~W~~~ 417 (470)
T PLN02193 409 TETLQWERL 417 (470)
T ss_pred cCcCEEEEc
Confidence 988776643
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=93.99 E-value=7.5 Score=42.74 Aligned_cols=101 Identities=12% Similarity=0.076 Sum_probs=49.5
Q ss_pred CcEEEEEeCC-----CcEEEEECCCCcee---eEee-cCCC--eeEEEEecCCCEEEEEEc-----CCeEEEEECCCCeE
Q 003279 650 EDLLCSCDNN-----SEIRYWSINNGSCA---GVFK-CQSG--ATQMRFQPRLGRILAAAI-----ENYISILDVETQVC 713 (834)
Q Consensus 650 ~~llasgs~D-----g~I~lwDl~s~~~i---~~~~-~~~~--i~~l~~sp~g~~ll~~s~-----dg~I~iwDl~t~~~ 713 (834)
+.+++.|+.+ ..+..||+.+.+.. ..+. .... -.+++. -++..++.|+. ...+..||+.+.+-
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 4466666654 35777787765531 1111 1111 122222 24455566654 24688899886532
Q ss_pred --EEEEeCCCCCEEEEEEcCCCCEEEEEe-CC----eEEEEEcCCC
Q 003279 714 --RLKLQGHKNQVHSVCWNTSGEYLASVS-DE----LVRVWSIGSG 752 (834)
Q Consensus 714 --~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg----~I~IwDl~s~ 752 (834)
+..+... ......+..-++++++.|+ ++ .+.+||..+.
T Consensus 152 ~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 152 FELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 2222211 1112222233566666665 43 3568888765
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.91 E-value=3.1 Score=47.97 Aligned_cols=268 Identities=14% Similarity=0.025 Sum_probs=133.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCC-CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 630 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~-~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i 630 (834)
..+|..+.+...| .|.+|+.|| +..||..+++.+..-.... ..|..+..+-.+ .|.+|+.+| |++.+.+.....-
T Consensus 164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 3458888888888 455677665 6778888887776554433 566666665555 466676666 7777766522211
Q ss_pred eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce-eeEeecC---CCeeEEEEecCCCEEEEEEcCCeEEEE
Q 003279 631 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFKCQ---SGATQMRFQPRLGRILAAAIENYISIL 706 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~-i~~~~~~---~~i~~l~~sp~g~~ll~~s~dg~I~iw 706 (834)
....-....|..+.-...|. +..|+.+|..+. ....... +...+.+ +.+.++-.+.+ +.+-+++.++.+++-
T Consensus 240 ~~~~lp~~~I~ll~qD~qG~--lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~d-GsLWv~t~~giv~~~ 315 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQGE--LWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDTD-GSLWVGTYGGIVRYL 315 (671)
T ss_pred cCCCCcchheeeeecccCCC--EEEeecccceeE-ecCCCCccccccccCCccccccceeeccC-CCEeeeccCceEEEe
Confidence 11122334455555444443 345665554433 3322222 2122211 23444444444 446666666666554
Q ss_pred ECCCCeEEEEEeCCCCC-EEEEEEcC---CCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003279 707 DVETQVCRLKLQGHKNQ-VHSVCWNT---SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 707 Dl~t~~~~~~l~~h~~~-I~sl~~sp---dg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~s 782 (834)
+.. ......+...++. +-.++..| +.......+-+.+.+-+-.++.....++.. ....|+.+++..++. +..
T Consensus 316 ~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~--Rg~nit~~~~d~~g~-lWl 391 (671)
T COG3292 316 TAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQL--RGMNITTTLEDSRGR-LWL 391 (671)
T ss_pred cch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeec--cccccchhhhccCCc-EEE
Confidence 432 1111111111111 11111111 111111111223333333344222222222 234566666776554 677
Q ss_pred EEcCCeEEEEECCC-CeEEEec--cCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 783 IGCYETLELWNMTE-NKTLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 783 gs~dg~I~Iwdl~~-~~~~~l~--~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
++..+-+..|+.++ +.+.... ...++|..|-=.|+++ |..|+.+|.+++
T Consensus 392 gs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 392 GSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred EecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 77775677777766 4333222 3456788888888888 777888887653
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.85 E-value=3.2 Score=48.55 Aligned_cols=144 Identities=8% Similarity=-0.016 Sum_probs=69.0
Q ss_pred CcEEEEEeCC--CcEEEEECCCCceeeEeecCCCe-eEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEE--EeCCC
Q 003279 650 EDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGA-TQMRFQPRLGRILAAAIE---NYISILDVETQVCRLK--LQGHK 721 (834)
Q Consensus 650 ~~llasgs~D--g~I~lwDl~s~~~i~~~~~~~~i-~~l~~sp~g~~ll~~s~d---g~I~iwDl~t~~~~~~--l~~h~ 721 (834)
+.+.+.|+.+ ..+..||..+++....-...... ......-++...++|+.+ ..+..||.++..-... .....
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r 398 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH 398 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc
Confidence 4566677653 35788888765443322222221 112223355666666654 3577888876533221 11111
Q ss_pred CCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCC
Q 003279 722 NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTE 796 (834)
Q Consensus 722 ~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d-----g~I~Iwdl~~ 796 (834)
.. .+++ .-++++.+.| |.+.+||..++. ...+........... + ..-+++..++||.+ ..|..||..+
T Consensus 399 ~~-~~~~-~~~~~IYv~G--G~~e~ydp~~~~-W~~~~~m~~~r~~~~-~-~v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 399 YK-SCAL-VFGRRLFLVG--RNAEFYCESSNT-WTLIDDPIYPRDNPE-L-IIVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred cc-ceEE-EECCEEEEEC--CceEEecCCCCc-EeEcCCCCCCccccE-E-EEECCEEEEECCcCCCcccceEEEEECCC
Confidence 11 1222 2356655655 356778887652 122222221112222 2 22355555566543 3577888777
Q ss_pred CeEE
Q 003279 797 NKTL 800 (834)
Q Consensus 797 ~~~~ 800 (834)
++..
T Consensus 472 ~~W~ 475 (480)
T PHA02790 472 YSWN 475 (480)
T ss_pred CeEE
Confidence 6553
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=6.6 Score=44.26 Aligned_cols=24 Identities=8% Similarity=0.084 Sum_probs=15.5
Q ss_pred CCCEEEEEeCC-----------CeEEEEecCCCCc
Q 003279 605 SLSRLATSSAD-----------RTVRVWDTENPDY 628 (834)
Q Consensus 605 dg~~Latgs~D-----------g~I~IWDl~s~~~ 628 (834)
++.+++.|+.+ ..+..||..+..+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W 118 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSW 118 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEE
Confidence 56677777653 2477888876554
|
|
| >PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.019 Score=60.93 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=0.0
Q ss_pred HHhhhccccCCCCC
Q 003279 121 QQQQRRDSTQHLND 134 (834)
Q Consensus 121 qq~q~~~~~~~~~~ 134 (834)
||+++.++.+++||
T Consensus 371 QQ~qQ~qQq~qmng 384 (468)
T PF11498_consen 371 QQQQQQQQQHQMNG 384 (468)
T ss_dssp --------------
T ss_pred HHHHhhhhhhhccc
Confidence 34444455566776
|
elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=93.61 E-value=1.4 Score=52.31 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=47.4
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEc--cCCCcEEEEEeCCCcEEEEEC
Q 003279 595 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH--PSKEDLLCSCDNNSEIRYWSI 667 (834)
Q Consensus 595 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fs--pdg~~llasgs~Dg~I~lwDl 667 (834)
..+.-+.-+.-++..++-+....+.|||...+...........+.|.+++|. |++..++++| ....|.+|.-
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG-f~~~v~l~~Q 103 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG-FPHHVLLYTQ 103 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE-cCcEEEEEEc
Confidence 3445555555455545545556899999997665444443567899999985 6777666555 4777777753
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.048 Score=64.72 Aligned_cols=96 Identities=14% Similarity=0.166 Sum_probs=55.2
Q ss_pred CCcEEEEeCCCCeE-EEEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCC--CC----ceeeeeccCCCCeEEEE
Q 003279 573 DKKAVLWCTESFTV-KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN--PD----YSLRTFTGHSTTVMSLD 644 (834)
Q Consensus 573 Dg~I~IWd~~t~~~-~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s--~~----~~i~~~~~h~~~V~sl~ 644 (834)
.+-|++-+.++.-. ...+++..+.|-.+.|-. +...++ -.-|.+.|||++- ++ ..+.........+.-|.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 45677776654321 123467788888888854 222222 2336788998763 21 22333444445556666
Q ss_pred EccC--CCcEEEEEeCCCcEEEEECCCC
Q 003279 645 FHPS--KEDLLCSCDNNSEIRYWSINNG 670 (834)
Q Consensus 645 fspd--g~~llasgs~Dg~I~lwDl~s~ 670 (834)
|.|- .+-.++.+..+++|++.+++..
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra 215 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRA 215 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechH
Confidence 6652 2346666777888888777654
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=93.54 E-value=5.8 Score=43.60 Aligned_cols=108 Identities=8% Similarity=0.087 Sum_probs=53.9
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeE---EEEeccCCCCe--EEEEECCCCCEEEEEeC-----CCeEEEEecCCCC
Q 003279 563 DGKLLATGGHD-----KKAVLWCTESFTV---KSTLEEHTQWI--TDVRFSPSLSRLATSSA-----DRTVRVWDTENPD 627 (834)
Q Consensus 563 dg~~Lasgs~D-----g~I~IWd~~t~~~---~~~l~~h~~~I--~~l~fspdg~~Latgs~-----Dg~I~IWDl~s~~ 627 (834)
++.+++.|+.+ ..+..||+.+.+- ...+..-..+. .+++. -++++++.|+. ...+.+||+.+..
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 55677777754 3566777766543 12221111111 12222 25666677764 2468889988766
Q ss_pred ceeee-eccCCCCeEEEEEccCCCcEEEEEeCCC----cEEEEECCCCcee
Q 003279 628 YSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNGSCA 673 (834)
Q Consensus 628 ~~i~~-~~~h~~~V~sl~fspdg~~llasgs~Dg----~I~lwDl~s~~~i 673 (834)
+.... +.... .....+...+ +.+++.|+.++ .+.+||+.+.+-.
T Consensus 151 W~~~~~~p~~~-r~~~~~~~~~-~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 151 WFELPDFPGEP-RVQPVCVKLQ-NELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred eeECCCCCCCC-CCcceEEEEC-CEEEEEcCCCCccccceEEEecCCCeeE
Confidence 53221 11111 1111222223 44666776553 3568898876543
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=93.47 E-value=2.6 Score=39.90 Aligned_cols=119 Identities=12% Similarity=0.055 Sum_probs=78.6
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEecCCCCce------eeeeccCCCCeEEEEEcc----CCCcEEEEEeCCCcEEEEEC
Q 003279 598 TDVRFSPSLSRLATSSADRTVRVWDTENPDYS------LRTFTGHSTTVMSLDFHP----SKEDLLCSCDNNSEIRYWSI 667 (834)
Q Consensus 598 ~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~------i~~~~~h~~~V~sl~fsp----dg~~llasgs~Dg~I~lwDl 667 (834)
..-+|......|+.++.-|.|.|++....... -..+......|++|+--+ ++..+|+.|+ ...|..||+
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 34456666678888899999999987643211 112333556788886543 2355666666 668999999
Q ss_pred CCCceeeEeecCCCeeEEEEec---CCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 003279 668 NNGSCAGVFKCQSGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLKL 717 (834)
Q Consensus 668 ~s~~~i~~~~~~~~i~~l~~sp---~g~~ll~~s~dg~I~iwDl~t~~~~~~l 717 (834)
....-+.......++.++.+-. ...-++..+.+..|.-||.+-.+...+.
T Consensus 81 ~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 81 ENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 9888777666778888887743 2234666666677777777665555443
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=93.36 E-value=20 Score=41.83 Aligned_cols=174 Identities=7% Similarity=-0.033 Sum_probs=81.9
Q ss_pred CcEEEEEeCC-------CcEEEEECCCCceeeEeec---CC--CeeEEEEecCCCEEEEEEcC-----CeEEEEECCCCe
Q 003279 650 EDLLCSCDNN-------SEIRYWSINNGSCAGVFKC---QS--GATQMRFQPRLGRILAAAIE-----NYISILDVETQV 712 (834)
Q Consensus 650 ~~llasgs~D-------g~I~lwDl~s~~~i~~~~~---~~--~i~~l~~sp~g~~ll~~s~d-----g~I~iwDl~t~~ 712 (834)
+.+++.|+.+ ..+.+||+.+.+-...-.. .. ........-++..++.|+.+ +.+.+||+.+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 4466666642 2477889887654321110 11 11111222344555666654 468899998764
Q ss_pred EEE--EEe--CCCCCEEEEEEcCCCCEEEEEe-CC-----eEEEEEcCCCCCceeEEEe---ecCCCceEEEEEeCCCCE
Q 003279 713 CRL--KLQ--GHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHEL---SCTGNKFHSCVFHPTFPS 779 (834)
Q Consensus 713 ~~~--~l~--~h~~~I~sl~~spdg~~Lasgs-Dg-----~I~IwDl~s~~~~~~i~~~---~~~~~~I~svafspdg~~ 779 (834)
-.. ... .....-.+++. -++++++.|+ ++ .+.+||+.+..- ..+... ...... ..++. -+++.
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~~~~R~~-~~~~~-~~gki 331 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW-FHCSTPGDSFSIRGG-AGLEV-VQGKV 331 (470)
T ss_pred EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE-EeCCCCCCCCCCCCC-cEEEE-ECCcE
Confidence 322 111 01111122222 2455555554 32 467888776521 111100 001111 12222 25566
Q ss_pred EEEEEcC----CeEEEEECCCCeEEEeccC----CCCeEEEEEeCCCCEEEEEecC
Q 003279 780 LLVIGCY----ETLELWNMTENKTLTLSAH----DKLVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 780 L~sgs~d----g~I~Iwdl~~~~~~~l~~h----~~~V~~lafspdg~~LaSgs~D 827 (834)
+++++.+ ..|.+||+.+.+...+... .....+.+..-++++++.|+.+
T Consensus 332 yviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~ 387 (470)
T PLN02193 332 WVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEI 387 (470)
T ss_pred EEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCcc
Confidence 6666654 4699999998877654322 1111112223356777777753
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.065 Score=63.65 Aligned_cols=163 Identities=9% Similarity=0.092 Sum_probs=90.5
Q ss_pred EecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCC--CCeEEE-----EeccCCCCeEEEEECC---CCCEEEEEeCC
Q 003279 547 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE--SFTVKS-----TLEEHTQWITDVRFSP---SLSRLATSSAD 615 (834)
Q Consensus 547 ~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~IWd~~--t~~~~~-----~l~~h~~~I~~l~fsp---dg~~Latgs~D 615 (834)
.++|..+.|-.+.|-. +...++ -.-|.+.|||++ .|+... ........+.-|.|+| +.-++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 4556677787887743 222222 223678899875 343322 2222334445566665 56778888888
Q ss_pred CeEEEEecCCCCceeeeeccCCCCeEEEE-----------EccCCCcEEEEEeCCCcEEEEECC-----CCceeeEeecC
Q 003279 616 RTVRVWDTENPDYSLRTFTGHSTTVMSLD-----------FHPSKEDLLCSCDNNSEIRYWSIN-----NGSCAGVFKCQ 679 (834)
Q Consensus 616 g~I~IWDl~s~~~~i~~~~~h~~~V~sl~-----------fspdg~~llasgs~Dg~I~lwDl~-----s~~~i~~~~~~ 679 (834)
++|++.+++... ...+.+|...+..++ .+|||. +|+.+..||.+++|.+- ...|....+.+
T Consensus 205 ~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~~~~rclhewkph 281 (1283)
T KOG1916|consen 205 GEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITGKIVHRCLHEWKPH 281 (1283)
T ss_pred CceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeeccccHhhhhccCCC
Confidence 999998887533 245556777666554 467765 55566667777776542 22333444433
Q ss_pred CCeeEEEEecCC---------C--EEEEEEc-CCeEEEEECCCCeEE
Q 003279 680 SGATQMRFQPRL---------G--RILAAAI-ENYISILDVETQVCR 714 (834)
Q Consensus 680 ~~i~~l~~sp~g---------~--~ll~~s~-dg~I~iwDl~t~~~~ 714 (834)
.+-..+||..+. . ++++++. +..+++|.....+|.
T Consensus 282 d~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 282 DKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 332233332211 1 2233332 356788877766665
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=92.95 E-value=15 Score=43.07 Aligned_cols=226 Identities=13% Similarity=0.124 Sum_probs=111.6
Q ss_pred CCCCCEEEEEeCCCeEEEEecCCCCc-eeeeeccC-CCCeEEEEEccCCCcEEEEEeC--CCcEEEEECCCCceeeEeec
Q 003279 603 SPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGH-STTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKC 678 (834)
Q Consensus 603 spdg~~Latgs~Dg~I~IWDl~s~~~-~i~~~~~h-~~~V~sl~fspdg~~llasgs~--Dg~I~lwDl~s~~~i~~~~~ 678 (834)
..++..++.+..+|.++...+..... ......+. .....++++..++..+++.|+. |+.+..|....-+.+..+..
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 44677899999999999888875431 11222222 4556777777665445656664 45666666555566667777
Q ss_pred CCCeeEEEEecC----CC------EEEEEEc---CCeEEEEECCCCeE--EEEEeCCCC--CEEEEEEcC-CCCEEEEEe
Q 003279 679 QSGATQMRFQPR----LG------RILAAAI---ENYISILDVETQVC--RLKLQGHKN--QVHSVCWNT-SGEYLASVS 740 (834)
Q Consensus 679 ~~~i~~l~~sp~----g~------~ll~~s~---dg~I~iwDl~t~~~--~~~l~~h~~--~I~sl~~sp-dg~~Lasgs 740 (834)
-+++..+++.+. .. .+++++. +|.++++.-.-+-. ........+ .++.+.... ++.+|+.+.
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~ 378 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSF 378 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEc
Confidence 788998888642 22 5666654 57888774322211 222222222 233333222 256888777
Q ss_pred CCeEEEEEcCCCCCceeEEE-----eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-e-ccCCCCeEEEE
Q 003279 741 DELVRVWSIGSGSKGECIHE-----LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-L-SAHDKLVSSLA 813 (834)
Q Consensus 741 Dg~I~IwDl~s~~~~~~i~~-----~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~-l-~~h~~~V~~la 813 (834)
...-+|+.+........+.. +......+.+..+. +..++=.... .|++.+....+... + ......|.+.+
T Consensus 379 ~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I~~a~ 455 (504)
T PF10433_consen 379 PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSIIVAAS 455 (504)
T ss_dssp SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---SEEE
T ss_pred CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeEEEEE
Confidence 66667777752111122211 11122223222332 3344444444 58888877776663 2 23444555555
Q ss_pred EeCCCCEEEEEecCCcEEEe
Q 003279 814 ASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 814 fspdg~~LaSgs~DG~I~IW 833 (834)
+. +.+++.+-.++.+.++
T Consensus 456 ~~--~~~v~v~~~~~~~~~~ 473 (504)
T PF10433_consen 456 IN--DPQVLVALSGGELVYF 473 (504)
T ss_dssp ES--SSEEEEEE-TTEEEEE
T ss_pred EC--CCEEEEEEeCCcEEEE
Confidence 43 3455555556666554
|
... |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.92 E-value=3.7 Score=41.66 Aligned_cols=176 Identities=13% Similarity=0.082 Sum_probs=100.6
Q ss_pred CCCEEEEEeC--CCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCe
Q 003279 605 SLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA 682 (834)
Q Consensus 605 dg~~Latgs~--Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i 682 (834)
++.++.+.+. ...|++||+.+++.....-.. ...+..=-...-++.+..-.-.+|.-..+|.++.+++..+...+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 4566666554 347999999987753322222 1222221112223445555667899999999999999888877766
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCeEE----EEEeC-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce
Q 003279 683 TQMRFQPRLGRILAAAIENYISILDVETQVCR----LKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 756 (834)
Q Consensus 683 ~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~----~~l~~-h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~ 756 (834)
..++. ++..|+.+.....++.-|.++-... .++.+ .-..++.+.|- +|.+++-.- +..|...|..+++...
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 66654 4455777777777888787654322 22222 11233344443 455555444 5556666666653211
Q ss_pred eE---------EEeecCCCceEEEEEeCCCCEEEEEE
Q 003279 757 CI---------HELSCTGNKFHSCVFHPTFPSLLVIG 784 (834)
Q Consensus 757 ~i---------~~~~~~~~~I~svafspdg~~L~sgs 784 (834)
.+ ..-..+....+.+++.|+...++..+
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 11 11122345678889999886555544
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=92.89 E-value=11 Score=41.72 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=22.7
Q ss_pred eEEEEECCCCeEEEeccCCCCe-EEEEEeCCCCEEEEEecC
Q 003279 788 TLELWNMTENKTLTLSAHDKLV-SSLAASTVNGMVASASHD 827 (834)
Q Consensus 788 ~I~Iwdl~~~~~~~l~~h~~~V-~~lafspdg~~LaSgs~D 827 (834)
.+.+||.++.+...+....... .+.+..-++++++.|+.+
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccC
Confidence 4678888776654332222222 222334578888888765
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.82 Score=56.21 Aligned_cols=141 Identities=11% Similarity=0.022 Sum_probs=86.4
Q ss_pred CeeEEEEecCCCEEEEEEcC--CeEEEEECCCCeEE-----EEEeC------CCCCEEEEEEcCCCC--EEEEEeCCeEE
Q 003279 681 GATQMRFQPRLGRILAAAIE--NYISILDVETQVCR-----LKLQG------HKNQVHSVCWNTSGE--YLASVSDELVR 745 (834)
Q Consensus 681 ~i~~l~~sp~g~~ll~~s~d--g~I~iwDl~t~~~~-----~~l~~------h~~~I~sl~~spdg~--~LasgsDg~I~ 745 (834)
.+..+...+|+...++.... -.|+.||+++-... .-+.. ......++.|.|.-. .+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 34555556665555554443 37889998763211 11111 223456788888643 33333488898
Q ss_pred EEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEec----cCCCCeEEEEEeCCCCEE
Q 003279 746 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS----AHDKLVSSLAASTVNGMV 821 (834)
Q Consensus 746 IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~----~h~~~V~~lafspdg~~L 821 (834)
|..+.-.. ..+.. -......++++|+|.|+.+++|-..|++.-|...-.....+. .....|.+|+|-....++
T Consensus 182 V~~~~~~~--~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 182 VKSTKQLA--QNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhh--hhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEE
Confidence 88775431 11111 123456899999999999999999999988875443222221 124689999998877766
Q ss_pred EEE
Q 003279 822 ASA 824 (834)
Q Consensus 822 aSg 824 (834)
|+-
T Consensus 259 vvy 261 (1405)
T KOG3630|consen 259 VVY 261 (1405)
T ss_pred EEe
Confidence 643
|
|
| >TIGR01063 gyrA DNA gyrase, A subunit | Back alignment and domain information |
|---|
Probab=92.85 E-value=32 Score=42.86 Aligned_cols=264 Identities=11% Similarity=0.070 Sum_probs=136.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE---------EEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV---------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 625 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~---------~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s 625 (834)
|..-.+.++...+++-+.+|.|+-.+..+... ...++. .+.+..+........|+..+.+|.+...+...
T Consensus 487 i~~edli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~ 565 (800)
T TIGR01063 487 IDIEDLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKD-DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQ 565 (800)
T ss_pred cchhhccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCC-CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhh
Confidence 33344556677788889999998886654322 112222 23455555555566677777788776665432
Q ss_pred ---CC-----cee---eeeccCCCCeEEEEEcc-CCCcEEEEEeCCCcEEEEECCCCc-------eeeEeecCCCeeEEE
Q 003279 626 ---PD-----YSL---RTFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINNGS-------CAGVFKCQSGATQMR 686 (834)
Q Consensus 626 ---~~-----~~i---~~~~~h~~~V~sl~fsp-dg~~llasgs~Dg~I~lwDl~s~~-------~i~~~~~~~~i~~l~ 686 (834)
.. ..+ ..+.....-|.++.+.. +....++..+.+|.++-.++..-. ....+...+.+..+.
T Consensus 566 IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~ 645 (800)
T TIGR01063 566 IPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVR 645 (800)
T ss_pred CcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEE
Confidence 11 011 11222223344444322 123356678889999988775422 112222344455555
Q ss_pred EecCCCEEEEEEcCCeEEEEECCC---------CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC---
Q 003279 687 FQPRLGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS--- 753 (834)
Q Consensus 687 ~sp~g~~ll~~s~dg~I~iwDl~t---------~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~--- 753 (834)
.......+++.+..|.+..+.+.. |.....+. ....|.++....++.+++..+ .|.++...+..-.
T Consensus 646 ~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~ 724 (800)
T TIGR01063 646 LTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLK-NEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETS 724 (800)
T ss_pred EeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCC-CCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccC
Confidence 555556788888888776665532 22222332 233455544434444455544 8877777654221
Q ss_pred ---CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEE
Q 003279 754 ---KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 823 (834)
Q Consensus 754 ---~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaS 823 (834)
.......+......+..+....+...++..+.+|.+..++...-... ......|..+.... +..++.
T Consensus 725 R~~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~eI~~~--gR~a~GVk~i~L~~-~D~vv~ 794 (800)
T TIGR01063 725 RGGKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQDVSEQ--GRNTQGVRLIRLDE-DDKLVS 794 (800)
T ss_pred CCCcceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHhhCCcc--ccCCCCeeeeeeCC-CCEEEE
Confidence 11122222222344444444444456777788887777766532211 12233466666643 334443
|
This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.83 E-value=3.6 Score=41.72 Aligned_cols=170 Identities=8% Similarity=-0.017 Sum_probs=91.7
Q ss_pred CcEEEEEeC--CCcEEEEECCCCceeeEeecC-CCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEEeCCCCCEE
Q 003279 650 EDLLCSCDN--NSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVH 725 (834)
Q Consensus 650 ~~llasgs~--Dg~I~lwDl~s~~~i~~~~~~-~~i~~l~~sp~g~~ll~~s-~dg~I~iwDl~t~~~~~~l~~h~~~I~ 725 (834)
.+++.+.+. ...|++||+.+++.+...+.. ..+..=-+..-+.++..-. .+|.-.+||.++.+++..+. ..+.=.
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGW 134 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGW 134 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcce
Confidence 356666654 347999999999888766654 1222111222234444444 47888999999887776654 333445
Q ss_pred EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc---eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE
Q 003279 726 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK---FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 801 (834)
Q Consensus 726 sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~---I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~ 801 (834)
.++. |++-|..++ ..+++.-|-++......+... ....+ ++.+.|- +|...+-.-.+..|...|..+|+++.
T Consensus 135 gLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT-~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 135 GLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVT-DDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeec--CCcceEeeCCceEEEecCHHHhhhcceEEEE-ECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 5553 444455444 456666665544221222111 11111 1222232 33333333444456666666666552
Q ss_pred e-------------ccCCCCeEEEEEeCCC-CEEEEE
Q 003279 802 L-------------SAHDKLVSSLAASTVN-GMVASA 824 (834)
Q Consensus 802 l-------------~~h~~~V~~lafspdg-~~LaSg 824 (834)
. ..|....+.+++.|++ ++++||
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 1 2345678899999988 455665
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.83 E-value=1.3 Score=50.08 Aligned_cols=142 Identities=12% Similarity=0.137 Sum_probs=93.2
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCC-------EEEEEEcCCeEEEEECCCC-eE--EEEE
Q 003279 648 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG-------RILAAAIENYISILDVETQ-VC--RLKL 717 (834)
Q Consensus 648 dg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~-------~ll~~s~dg~I~iwDl~t~-~~--~~~l 717 (834)
+...++..++....++-.|++.|+.+.....+..+ -+.|.|..+ .-++|-++..|.-.|.+-. .. +...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 33444555666678888999999999999987777 777887532 3466777777777787643 22 2222
Q ss_pred eC--CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 718 QG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 718 ~~--h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
+. ......|..-. ..-|+++++ .|-|++||--.. .....+.+-+..|..+..+.+|++|++.+. ..|.+.|+
T Consensus 557 KdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~---rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 557 KDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGK---RAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred hhccccccccccccc-cCceEEEecCCCceeeehhhcc---hhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 11 12233333333 344677777 889999996443 233345566788999999999998776554 46777776
Q ss_pred C
Q 003279 795 T 795 (834)
Q Consensus 795 ~ 795 (834)
.
T Consensus 632 ~ 632 (776)
T COG5167 632 P 632 (776)
T ss_pred c
Confidence 3
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.32 Score=37.33 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=28.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEecC
Q 003279 594 TQWITDVRFSPSLSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 594 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 624 (834)
...|.+++|+|...+||.++.||.|.||.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999994
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=92.69 E-value=3.1 Score=39.32 Aligned_cols=111 Identities=10% Similarity=0.101 Sum_probs=72.2
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCe--------EEEEEeCCCCCEEEEEEcC-----CCCEEEEEeCCeEEEEEcCC
Q 003279 685 MRFQPRLGRILAAAIENYISILDVETQV--------CRLKLQGHKNQVHSVCWNT-----SGEYLASVSDELVRVWSIGS 751 (834)
Q Consensus 685 l~~sp~g~~ll~~s~dg~I~iwDl~t~~--------~~~~l~~h~~~I~sl~~sp-----dg~~LasgsDg~I~IwDl~s 751 (834)
-.|......|++++..|.|.|++..... .+..+. -...|++|+-.+ +...|+.|+...|.+||+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence 3455555678888889999999876432 233333 456777775543 45688999999999999987
Q ss_pred CCCceeEEEeecCCCceEEEEEe---CCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 752 GSKGECIHELSCTGNKFHSCVFH---PTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 752 ~~~~~~i~~~~~~~~~I~svafs---pdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
... ...++ -...+.++.+- ....-++..+.+..|.-||....+.+
T Consensus 83 N~d-~Fyke---~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 83 NSD-LFYKE---VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred Cch-hhhhh---CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 632 11222 23456666553 32334677777778888888777665
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.033 Score=62.19 Aligned_cols=148 Identities=12% Similarity=0.121 Sum_probs=105.8
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceee-E
Q 003279 597 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-V 675 (834)
Q Consensus 597 I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~-~ 675 (834)
.....|.+.+.-++.++.+..|..||-.... ..-....+....++|..+++.+++.+-..+.+.+||+.+...-. .
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~---~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQV---ILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcce---ecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence 3455677777778888888889999876422 22222456677889999888888888889999999998643221 1
Q ss_pred eecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEE
Q 003279 676 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVW 747 (834)
Q Consensus 676 ~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~Iw 747 (834)
+.....-.-+.|++....++.+...+.+.||+..+.+.+.....|...+++++|.+.+..+..+.|..+.+-
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVT 185 (615)
T ss_pred ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHHh
Confidence 111122223678888888999988999999999887766666558999999999998776665545544433
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=92.59 E-value=3.6 Score=49.57 Aligned_cols=101 Identities=9% Similarity=0.144 Sum_probs=66.8
Q ss_pred CCcEEEEEeCCCcEEEEECCC-------C-------------ceeeEeecCCCeeEEEEe--cCCCEEEEEEcCCeEEEE
Q 003279 649 KEDLLCSCDNNSEIRYWSINN-------G-------------SCAGVFKCQSGATQMRFQ--PRLGRILAAAIENYISIL 706 (834)
Q Consensus 649 g~~llasgs~Dg~I~lwDl~s-------~-------------~~i~~~~~~~~i~~l~~s--p~g~~ll~~s~dg~I~iw 706 (834)
+..+|+.|.+||.|.+|.+++ . ++...+..+..+..++++ ...+.|++++....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 456888999999999996521 0 123344456678889998 666777777777777776
Q ss_pred ECCCC--eE-EEEEeCCCCCEEEEEEcCCC-----C-EEEEEe-CCeEEEEEc
Q 003279 707 DVETQ--VC-RLKLQGHKNQVHSVCWNTSG-----E-YLASVS-DELVRVWSI 749 (834)
Q Consensus 707 Dl~t~--~~-~~~l~~h~~~I~sl~~spdg-----~-~Lasgs-Dg~I~IwDl 749 (834)
-.... +. ...-..|...|-+|+|-++. . +|++++ .|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 54431 11 11111256678899997643 2 677777 998888887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.51 E-value=9.4 Score=43.02 Aligned_cols=151 Identities=15% Similarity=0.118 Sum_probs=86.2
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCC---eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc---ee
Q 003279 557 SCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SL 630 (834)
Q Consensus 557 sl~fSpdg~~Lasgs~Dg~I~IWd~~t~---~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~---~i 630 (834)
.+-|...++.| .+...|.+.=|-+... -++..-....++|.+|.|++|.+.||+--.|++|.+++...... ..
T Consensus 27 gvFfDDaNkql-favrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 27 GVFFDDANKQL-FAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred ceeeccCcceE-EEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 34444333333 3334455666654321 22222234567999999999999999999999999999843221 11
Q ss_pred eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC--CceeeEeecCCCeeEEEEecCCCEEEEEEc--CCeEEEE
Q 003279 631 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--GSCAGVFKCQSGATQMRFQPRLGRILAAAI--ENYISIL 706 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s--~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~--dg~I~iw 706 (834)
......+..|..++|+.+.+ +.+.. +.-+.+|-+.. ......-.+.-.|.-..|.++.+.++.++. .+.+.-+
T Consensus 106 ~~ck~k~~~IlGF~W~~s~e-~A~i~--~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf 182 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSSTE-IAFIT--DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPF 182 (657)
T ss_pred HHhccCcceeEEEEEecCee-EEEEe--cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccE
Confidence 22233445688999987633 43333 22355554432 222222223466777888888776555544 4455555
Q ss_pred ECCCC
Q 003279 707 DVETQ 711 (834)
Q Consensus 707 Dl~t~ 711 (834)
-++++
T Consensus 183 ~~~~~ 187 (657)
T KOG2377|consen 183 HFRAG 187 (657)
T ss_pred EEeec
Confidence 55544
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=92.51 E-value=5 Score=41.13 Aligned_cols=141 Identities=20% Similarity=0.242 Sum_probs=81.5
Q ss_pred CEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC--C---cEEEE-ECCC----Cceee--
Q 003279 607 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--S---EIRYW-SINN----GSCAG-- 674 (834)
Q Consensus 607 ~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D--g---~I~lw-Dl~s----~~~i~-- 674 (834)
+.|+.+.....|.+|++.........-...-+.|..+.++..|++++..=.+. . .+++| |++. ...+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 45555567778999999854443333333448899999999988665432221 1 45554 2221 11111
Q ss_pred ---------------------EeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE------EEEEeC----C-CC
Q 003279 675 ---------------------VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC------RLKLQG----H-KN 722 (834)
Q Consensus 675 ---------------------~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~------~~~l~~----h-~~ 722 (834)
.+.....+.+++..|-.+.|++|+ ++.+.+|.+..... ...|.. | .+
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 122234567888888767777665 46788887664432 111111 1 11
Q ss_pred -CEEEEEEcCCCCEEEEEeCCeEEEEEcC
Q 003279 723 -QVHSVCWNTSGEYLASVSDELVRVWSIG 750 (834)
Q Consensus 723 -~I~sl~~spdg~~LasgsDg~I~IwDl~ 750 (834)
.+..+++ .+.|+|..++..++++.+.
T Consensus 188 ~~p~~v~i--c~~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 188 FKPTQVAI--CEGYIAVMSDLEVLVLKLE 214 (215)
T ss_pred ceEEEEEE--EeeEEEEecCCEEEEEEEe
Confidence 1334444 3678888888888888763
|
|
| >PRK05560 DNA gyrase subunit A; Validated | Back alignment and domain information |
|---|
Probab=92.38 E-value=28 Score=43.44 Aligned_cols=227 Identities=8% Similarity=0.008 Sum_probs=110.3
Q ss_pred CCCCCEEEEEeCCCeEEEEecCCCCc--------eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE---CCCC-
Q 003279 603 SPSLSRLATSSADRTVRVWDTENPDY--------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS---INNG- 670 (834)
Q Consensus 603 spdg~~Latgs~Dg~I~IWDl~s~~~--------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwD---l~s~- 670 (834)
-++...+++-+.+|.|+.-.+.+-.. ....+. ..+.+..+........+++..+ .|.+.... +...
T Consensus 495 I~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klK-e~D~l~~~~~~~t~d~LllfTs-~Grv~~l~v~~iP~~~ 572 (805)
T PRK05560 495 IPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTK-EDDFVEHLFVASTHDTLLFFTN-RGRVYRLKVYEIPEAS 572 (805)
T ss_pred cCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccC-CCCeeEEEEEecCCCeEEEEec-CCeEEEEEhhhCcCCC
Confidence 34566778888888888776543110 011111 1234444444444454554443 56555543 3322
Q ss_pred -----ceee---EeecCCCe-eEEEEe--cCCCEEEEEEcCCeEEEEECCC-------CeEEEEEeCCCCCEEEEEEcCC
Q 003279 671 -----SCAG---VFKCQSGA-TQMRFQ--PRLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNTS 732 (834)
Q Consensus 671 -----~~i~---~~~~~~~i-~~l~~s--p~g~~ll~~s~dg~I~iwDl~t-------~~~~~~l~~h~~~I~sl~~spd 732 (834)
..+. .+.....| .++.+. ++...+++.+.+|.++-.++.. +.....+.....-+..+..+.+
T Consensus 573 ~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~~ 652 (805)
T PRK05560 573 RTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDGD 652 (805)
T ss_pred cCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCCC
Confidence 2221 12222333 334444 2567899999999988876643 2333344433333333333434
Q ss_pred CCEEEEEeCCeEEEEEcCCCC------CceeEEEeecCCCceEE-EEEeCCCCEEEEEEcCCeEEEEECCCC-------e
Q 003279 733 GEYLASVSDELVRVWSIGSGS------KGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCYETLELWNMTEN-------K 798 (834)
Q Consensus 733 g~~LasgsDg~I~IwDl~s~~------~~~~i~~~~~~~~~I~s-vafspdg~~L~sgs~dg~I~Iwdl~~~-------~ 798 (834)
..+++.+..|.+..+.+..-. .+..+..+.. ...|.. +.+.++..+++..+..|.++...+..- +
T Consensus 653 d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~k 731 (805)
T PRK05560 653 DDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGK 731 (805)
T ss_pred CEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCC
Confidence 445555557766655543211 1122222322 233443 344444447888888898877764321 1
Q ss_pred -EE--EeccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 799 -TL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 799 -~~--~l~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
.. .+....+.+..+........++..+.+|.+..
T Consensus 732 G~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lr 768 (805)
T PRK05560 732 GVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIR 768 (805)
T ss_pred cEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEE
Confidence 11 22232344444433333344555566676543
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=92.34 E-value=21 Score=39.52 Aligned_cols=40 Identities=5% Similarity=-0.081 Sum_probs=20.4
Q ss_pred CcEEEEECCCCceeeEeecCC--CeeEEEEecCCCEEEEEEc
Q 003279 660 SEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRILAAAI 699 (834)
Q Consensus 660 g~I~lwDl~s~~~i~~~~~~~--~i~~l~~sp~g~~ll~~s~ 699 (834)
..|.+||..+.+-...-.... .........+++.+++++.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeee
Confidence 468889988765443322211 1122223345566667665
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PRK05560 DNA gyrase subunit A; Validated | Back alignment and domain information |
|---|
Probab=92.23 E-value=38 Score=42.25 Aligned_cols=255 Identities=11% Similarity=0.045 Sum_probs=132.6
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeE---------EEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC---CC
Q 003279 559 HFSPDGKLLATGGHDKKAVLWCTESFTV---------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NP 626 (834)
Q Consensus 559 ~fSpdg~~Lasgs~Dg~I~IWd~~t~~~---------~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~---s~ 626 (834)
.+-++...+++-+.+|.|+.-++.+... ...++.. +.+..+........|+..+..|.+....+. ..
T Consensus 493 dlI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~-D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~ 571 (805)
T PRK05560 493 DLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKED-DFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEA 571 (805)
T ss_pred hccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCC-CeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCC
Confidence 4456777888899999998886554321 1122222 344444444556667777777877666443 21
Q ss_pred C-----cee---eeeccCCCCeEEEEEccC-CCcEEEEEeCCCcEEEEECCCC-------ceeeEeecCCCeeEEEEecC
Q 003279 627 D-----YSL---RTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNG-------SCAGVFKCQSGATQMRFQPR 690 (834)
Q Consensus 627 ~-----~~i---~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~lwDl~s~-------~~i~~~~~~~~i~~l~~sp~ 690 (834)
. ..+ ..+.....-|.++.+... ....++..+.+|.++..++..- .....+...+.+..+.....
T Consensus 572 ~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~ 651 (805)
T PRK05560 572 SRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDG 651 (805)
T ss_pred CcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCC
Confidence 1 111 112222233444455421 2335667888999988776432 22223333445555555555
Q ss_pred CCEEEEEEcCCeEEEEECCC---------CeEEEEEeCCCCCEEE-EEEcCCCCEEEEEe-CCeEEEEEcCCCC------
Q 003279 691 LGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHS-VCWNTSGEYLASVS-DELVRVWSIGSGS------ 753 (834)
Q Consensus 691 g~~ll~~s~dg~I~iwDl~t---------~~~~~~l~~h~~~I~s-l~~spdg~~Lasgs-Dg~I~IwDl~s~~------ 753 (834)
...+++.+..|.+..+.+.. |.....+.. ...|.+ +.+.+++.+++..+ .|.++...+..-.
T Consensus 652 ~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~ 730 (805)
T PRK05560 652 DDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG 730 (805)
T ss_pred CCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC
Confidence 67788888888777776532 222233332 233443 44444443555555 8888877654211
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCC
Q 003279 754 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV 817 (834)
Q Consensus 754 ~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspd 817 (834)
.......+......+..+........++..+.+|.+..++...-.. .......|..+.+..+
T Consensus 731 kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~eI~~--~gR~a~GVk~I~L~~~ 792 (805)
T PRK05560 731 KGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSEISI--TGRNTQGVRLIRLDEG 792 (805)
T ss_pred CcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHHCCc--cccCCCCeeeEecCCC
Confidence 1122222222233444443334445577778888777777653221 1122344666666443
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=91.91 E-value=22 Score=38.81 Aligned_cols=234 Identities=14% Similarity=0.015 Sum_probs=114.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCC--CeEEEEeccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEecCCCCc-----------
Q 003279 563 DGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDY----------- 628 (834)
Q Consensus 563 dg~~Lasgs~Dg~I~IWd~~t--~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~s~~~----------- 628 (834)
++++|+.|+++|...+. +.. .+....+ +...|+++...+..+.|++-+ ....++++++..-..
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 34689999998855554 554 3344443 456899999998777666554 334599999842111
Q ss_pred ---eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC----ceeeEe---e--cCCCeeEEEEecC--CCEE
Q 003279 629 ---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVF---K--CQSGATQMRFQPR--LGRI 694 (834)
Q Consensus 629 ---~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~----~~i~~~---~--~~~~i~~l~~sp~--g~~l 694 (834)
.......|......+.+......+++++.....|.++..... ...+.+ . .+..+..+..++. ...+
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 001122343333333333222223334444566776644321 111111 1 1222333333332 4566
Q ss_pred EEEEcCCeEEEEECCC--CeEE-----EEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCc
Q 003279 695 LAAAIENYISILDVET--QVCR-----LKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNK 767 (834)
Q Consensus 695 l~~s~dg~I~iwDl~t--~~~~-----~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~ 767 (834)
.+|+..+...++++.. .... ...........++..-+++.+|+ +.|....+.|...... .....+. -...
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Ll-c~~~~~v~Vn~~G~~~-~r~~~l~-w~~~ 245 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLL-CYDEFGVFVNLYGKRR-SRNPILH-WEFM 245 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEE-EECcEEEEEeCCCCcc-ccceEEE-cCCc
Confidence 6666643444454432 1000 00111110233343344555555 4455455555543111 1111222 1334
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccC
Q 003279 768 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH 805 (834)
Q Consensus 768 I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h 805 (834)
..++++.. ++|++... +.|.|+++.+++.+....+
T Consensus 246 p~~~~~~~--pyll~~~~-~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 246 PESFAYHS--PYLLAFHD-NGIEIRSIKTGELLQELAD 280 (302)
T ss_pred ccEEEEEC--CEEEEEcC-CcEEEEECCCCceEEEEec
Confidence 55667763 56776654 4599999999987744443
|
Unpublished observations. |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.74 E-value=37 Score=41.08 Aligned_cols=149 Identities=18% Similarity=0.192 Sum_probs=82.9
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCc--EEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC------CCe--
Q 003279 548 IPASTSKVESCHFSPDGKLLATGGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA------DRT-- 617 (834)
Q Consensus 548 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~--I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~------Dg~-- 617 (834)
...+...+..+.|+|+|..++..+.++. ..+|-+.... .+..+...|....|++++..++.... |+.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 131 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDH 131 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC---ceeeeecccccceeCCCCCeEEEEecccccccCCcee
Confidence 4456777889999999999998874332 3334332221 34445667888899998888776211 222
Q ss_pred -----EEEEecCCC-Cc----------eeeeeccCCCCeEEEEEccCCCcEEEEEeCC---C---cEEEEECCCCceeeE
Q 003279 618 -----VRVWDTENP-DY----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---S---EIRYWSINNGSCAGV 675 (834)
Q Consensus 618 -----I~IWDl~s~-~~----------~i~~~~~h~~~V~sl~fspdg~~llasgs~D---g---~I~lwDl~s~~~i~~ 675 (834)
+.+|....+ .. ...........+....+++++..++.+...+ . ...++...++.....
T Consensus 132 ~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (620)
T COG1506 132 LFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELESL 211 (620)
T ss_pred eeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceEEE
Confidence 233333222 11 1122233445566666666555433332222 1 223333345555555
Q ss_pred eecCCCeeEEEEecCCCEEEEEEc
Q 003279 676 FKCQSGATQMRFQPRLGRILAAAI 699 (834)
Q Consensus 676 ~~~~~~i~~l~~sp~g~~ll~~s~ 699 (834)
......+..+.+.++++.++..+.
T Consensus 212 ~~~~~~~~~~~~~~~gk~~~~~~~ 235 (620)
T COG1506 212 TPGEGSISKLAFDADGKSIALLGT 235 (620)
T ss_pred cCCCceeeeeeeCCCCCeeEEecc
Confidence 555566888889999886655544
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=91.67 E-value=25 Score=38.87 Aligned_cols=144 Identities=14% Similarity=0.176 Sum_probs=86.8
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCe------EEEEecCCCC---cee-----eeeccCCC--------CeEEEEEccCCCc
Q 003279 594 TQWITDVRFSPSLSRLATSSADRT------VRVWDTENPD---YSL-----RTFTGHST--------TVMSLDFHPSKED 651 (834)
Q Consensus 594 ~~~I~~l~fspdg~~Latgs~Dg~------I~IWDl~s~~---~~i-----~~~~~h~~--------~V~sl~fspdg~~ 651 (834)
-+.++.|.+.+++..+++.+.+|. +..+++.... ..+ ..+....+ ...+|++.+++.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~- 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS- 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC-
Confidence 355778888866666777777777 6666554310 001 11111111 445788855554
Q ss_pred EEEEEeCC------CcEEEEECCCCceeeEee----------------cCCCeeEEEEecCCCEEEEEEcC-----C---
Q 003279 652 LLCSCDNN------SEIRYWSINNGSCAGVFK----------------CQSGATQMRFQPRLGRILAAAIE-----N--- 701 (834)
Q Consensus 652 llasgs~D------g~I~lwDl~s~~~i~~~~----------------~~~~i~~l~~sp~g~~ll~~s~d-----g--- 701 (834)
++++.-.+ ..|+.++.. |+.+..+. .+.+...++++|++..|+++... +
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 66566556 678888876 65544432 24457899999999977777642 2
Q ss_pred --------eEEEEECCC-Ce----EEEEEeC-----CCCCEEEEEEcCCCCEEEEE
Q 003279 702 --------YISILDVET-QV----CRLKLQG-----HKNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 702 --------~I~iwDl~t-~~----~~~~l~~-----h~~~I~sl~~spdg~~Lasg 739 (834)
.|..||..+ +. ..+.+.. ....|..+.+.+++++|+.-
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 244566654 21 2233332 35678899999999988763
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=91.53 E-value=30 Score=39.56 Aligned_cols=268 Identities=10% Similarity=0.092 Sum_probs=133.2
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEc---C-CC-CEEEEEeCCCcEE
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS---P-DG-KLLATGGHDKKAV 577 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fS---p-dg-~~Lasgs~Dg~I~ 577 (834)
...+..||.++.+++|.......... .-+. .. .-..+|..+..- + .. ..||+ -.-..+.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~--~lll----------E~---~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~ 100 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPE--DLLL----------ET---QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLS 100 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCc--cEEE----------EE---ecCCcEEEEEeccccCCCCcceEEE-ecCCEEE
Confidence 35778899999999997744321110 0000 01 123456655542 2 22 23443 5567788
Q ss_pred EEeCCC--Ce-------EEEEeccCC--CCeEEEEECC----C-CCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeE
Q 003279 578 LWCTES--FT-------VKSTLEEHT--QWITDVRFSP----S-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 641 (834)
Q Consensus 578 IWd~~t--~~-------~~~~l~~h~--~~I~~l~fsp----d-g~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~ 641 (834)
||.+.. +. .+..+..|. .....+++-| . ..+|++-+.||.+.+|+-+.-. ...+...---.-
T Consensus 101 vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~--f~~~lp~~llPg 178 (418)
T PF14727_consen 101 VYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA--FSRFLPDFLLPG 178 (418)
T ss_pred EEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE--EEEEcCCCCCCc
Confidence 887621 11 112222232 2223333322 2 4678899999999999987532 222222223334
Q ss_pred EEEEccCCCcEEEEEeCCCcEEEEECCC--------------------C---ceeeEeecCCCeeEEEEec---CCCEEE
Q 003279 642 SLDFHPSKEDLLCSCDNNSEIRYWSINN--------------------G---SCAGVFKCQSGATQMRFQP---RLGRIL 695 (834)
Q Consensus 642 sl~fspdg~~llasgs~Dg~I~lwDl~s--------------------~---~~i~~~~~~~~i~~l~~sp---~g~~ll 695 (834)
.++|.+..+ .|++++.+..|..|.... + .+.+.+..+..+..+.... ....++
T Consensus 179 Pl~Y~~~tD-sfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~Iv 257 (418)
T PF14727_consen 179 PLCYCPRTD-SFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIV 257 (418)
T ss_pred CeEEeecCC-EEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEE
Confidence 566776644 555777777888876421 1 1223444455555555433 223343
Q ss_pred EEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEE-E----cCCCC----EEEEEeCCeEEEEEcCCCCCceeEEEeecCCC
Q 003279 696 AAAIENYISILDVETQVCRLKLQGHKNQVHSVC-W----NTSGE----YLASVSDELVRVWSIGSGSKGECIHELSCTGN 766 (834)
Q Consensus 696 ~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~-~----spdg~----~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~ 766 (834)
+-+ +..+.+++.. |......+ ......|++ | ..++. +++++.++.+.||.=. ..+........
T Consensus 258 vLg-er~Lf~l~~~-G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~-----~L~WsA~l~~~ 329 (418)
T PF14727_consen 258 VLG-ERSLFCLKDN-GSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT-----TLVWSAQLPHV 329 (418)
T ss_pred EEe-cceEEEEcCC-CeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC-----eEEEecCCCCC
Confidence 333 4566666653 44433333 222222222 2 11222 4555558999998632 22222222222
Q ss_pred c--eEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003279 767 K--FHSCVFHPTFPSLLVIGCYETLELWNMTEN 797 (834)
Q Consensus 767 ~--I~svafspdg~~L~sgs~dg~I~Iwdl~~~ 797 (834)
+ +....|..-...|++-+.+|.|.+-=+-+.
T Consensus 330 PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 330 PVALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred CEEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 2 222233334456777777887777655443
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.46 E-value=31 Score=41.82 Aligned_cols=146 Identities=12% Similarity=0.147 Sum_probs=78.6
Q ss_pred eccCCCCeEEEEECCCCCEEEEEeCCCe--EEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEE-----eCCCc-
Q 003279 590 LEEHTQWITDVRFSPSLSRLATSSADRT--VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC-----DNNSE- 661 (834)
Q Consensus 590 l~~h~~~I~~l~fspdg~~Latgs~Dg~--I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasg-----s~Dg~- 661 (834)
...+...+..+.|+|++..++..+.++. ..+|-+.... .+..+...|....|++++..+++.. ..++.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~ 130 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGD 130 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC----ceeeeecccccceeCCCCCeEEEEecccccccCCce
Confidence 3456778899999999999998874432 3444443221 2333456677788888877666511 11222
Q ss_pred ------EEEEECCCC-ce------------eeEeecCCCeeEEEEecCCCEEEEEEcCC-------eEEEEECCCCeEEE
Q 003279 662 ------IRYWSINNG-SC------------AGVFKCQSGATQMRFQPRLGRILAAAIEN-------YISILDVETQVCRL 715 (834)
Q Consensus 662 ------I~lwDl~s~-~~------------i~~~~~~~~i~~l~~sp~g~~ll~~s~dg-------~I~iwDl~t~~~~~ 715 (834)
+.+|....+ .. .........+....+++++..++....+. ...++...++ .+.
T Consensus 131 ~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 209 (620)
T COG1506 131 HLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNG-ELE 209 (620)
T ss_pred eeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCC-ceE
Confidence 223333222 11 11111233455555666556555554433 1233333233 333
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEe
Q 003279 716 KLQGHKNQVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 716 ~l~~h~~~I~sl~~spdg~~Lasgs 740 (834)
.+......+..+.|.++|+.++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~gk~~~~~~ 234 (620)
T COG1506 210 SLTPGEGSISKLAFDADGKSIALLG 234 (620)
T ss_pred EEcCCCceeeeeeeCCCCCeeEEec
Confidence 4444556688899999998555543
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.43 E-value=37 Score=40.45 Aligned_cols=200 Identities=13% Similarity=0.078 Sum_probs=111.4
Q ss_pred CeEEEEECCCCCEEEEEeC-----CCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC----cEEEEE
Q 003279 596 WITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWS 666 (834)
Q Consensus 596 ~I~~l~fspdg~~Latgs~-----Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg----~I~lwD 666 (834)
.+-.++.+||.+++|-+-. --++++-|+.++......+. +...+++|.+|+..++++-..++ .|....
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~---~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~ 206 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEIT---NTSGSFAWAADGKTLFYTRLDENHRPDKVWRHR 206 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhc---ccccceEEecCCCeEEEEEEcCCCCcceEEEEe
Confidence 3556788899888876532 34789999998775333332 34677899999998988877655 233333
Q ss_pred CCC--CceeeEeecCCC--eeEEEEecCCCEEEEEEcC---CeEEEEECCCCeE--EEEEeCCCCCEEEEEEcCCCCEEE
Q 003279 667 INN--GSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE---NYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLA 737 (834)
Q Consensus 667 l~s--~~~i~~~~~~~~--i~~l~~sp~g~~ll~~s~d---g~I~iwDl~t~~~--~~~l~~h~~~I~sl~~spdg~~La 737 (834)
+.+ ..-...+..... ...+.-+....+|+....+ ..+++++...... ........+--..+. ..+.+++
T Consensus 207 ~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~e--h~~d~f~ 284 (682)
T COG1770 207 LGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVE--HGGDRFY 284 (682)
T ss_pred cCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeee--ecCcEEE
Confidence 333 222223332222 3334444556677666543 5688888776432 222221112112222 1233333
Q ss_pred EE-e-CC-eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeEE
Q 003279 738 SV-S-DE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTL 800 (834)
Q Consensus 738 sg-s-Dg-~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg---~I~Iwdl~~~~~~ 800 (834)
.- . +| ..+|+..........-..+..|...+.--.|+--..+|+....++ .|++++.+++...
T Consensus 285 i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~ 353 (682)
T COG1770 285 ILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEER 353 (682)
T ss_pred EEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCcee
Confidence 33 3 55 555655443111123334555666666666766677777776655 7888988876654
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.28 E-value=5.7 Score=47.38 Aligned_cols=103 Identities=14% Similarity=0.247 Sum_probs=61.8
Q ss_pred eEEEEecCCCEEEEEEcCC-----eEEEEECCC---CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCC
Q 003279 683 TQMRFQPRLGRILAAAIEN-----YISILDVET---QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK 754 (834)
Q Consensus 683 ~~l~~sp~g~~ll~~s~dg-----~I~iwDl~t---~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~ 754 (834)
..+.|-|.|..+++...|| .|.++.-+. |+.-... +....+..++|+-....++.+..+.|.+|-..+-
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~-~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNy-- 326 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRV-GCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNY-- 326 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccC-CchhhhhhhhhhHHHHHHHHhhcceEEEEEccce--
Confidence 3488999999999988665 344444321 2211111 1334566788887777777777889999987654
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003279 755 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 789 (834)
Q Consensus 755 ~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I 789 (834)
.........-..+.-+.|+|....-+.....+.|
T Consensus 327 -hWYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I 360 (1243)
T COG5290 327 -HWYLKVERQIPGISYVKWHPEEKNTLLFRDGERI 360 (1243)
T ss_pred -EEEEEEeecCCCcceeeeccccCcEEEEecCCeE
Confidence 3333333344556677888876544433333333
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.17 E-value=2.2 Score=48.32 Aligned_cols=143 Identities=13% Similarity=0.142 Sum_probs=91.0
Q ss_pred CCCEEE-EEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCC-------cEEEEEeCCCcEEEEECCC-CceeeE
Q 003279 605 SLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-------DLLCSCDNNSEIRYWSINN-GSCAGV 675 (834)
Q Consensus 605 dg~~La-tgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~-------~llasgs~Dg~I~lwDl~s-~~~i~~ 675 (834)
+..+|+ .++....++-.|++.++. +..+.-|... -+.|.|..+ .-| +|-.+..|.-.|.+- |..+..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkv-veeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKV-VEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeeccccee-eeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCceee
Confidence 444443 444556677778876654 6666656554 456666432 123 344466666666653 322222
Q ss_pred eecCCCeeEEEE----ecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003279 676 FKCQSGATQMRF----QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGS 751 (834)
Q Consensus 676 ~~~~~~i~~l~~----sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s 751 (834)
.....-++.-.| ....+++++++..|.|++||--.......+.+....|..|..+.+|+++++.+...+.+.|++-
T Consensus 554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~i 633 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPI 633 (776)
T ss_pred eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEeccc
Confidence 222122222222 2346899999999999999976555555666777889999999999999998888899998753
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=91.14 E-value=34 Score=39.52 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=37.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--EEEec-----cCCCCeEEEEECCCC
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE-----EHTQWITDVRFSPSL 606 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~--~~~l~-----~h~~~I~~l~fspdg 606 (834)
-..-+.|+|.|||++|++--..|.|++++..++.. +..+. ...+....|+|+|+-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 34467899999998777655469999998655432 22111 135668899999874
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=91.10 E-value=17 Score=40.99 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=20.1
Q ss_pred EEEEECCCCeEEEeccCCC-CeEEEEEeCCCCEEEEEecC
Q 003279 789 LELWNMTENKTLTLSAHDK-LVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 789 I~Iwdl~~~~~~~l~~h~~-~V~~lafspdg~~LaSgs~D 827 (834)
+.+||..+.+...+..-.. .-...+..-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 5678888766542221111 11122334457788888753
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=91.05 E-value=28 Score=38.39 Aligned_cols=143 Identities=12% Similarity=0.166 Sum_probs=82.2
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCc------EEEEECCC--C--ceee---E--eecC-C--------CeeEEEEecCCCE
Q 003279 638 TTVMSLDFHPSKEDLLCSCDNNSE------IRYWSINN--G--SCAG---V--FKCQ-S--------GATQMRFQPRLGR 693 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs~Dg~------I~lwDl~s--~--~~i~---~--~~~~-~--------~i~~l~~sp~g~~ 693 (834)
+.+..|.+.+++..++ +.+++|. +..+++.. + ..+. . +... + ....+++.+++.+
T Consensus 20 GGlSgl~~~~~~~~~~-avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFY-AVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEE-EEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 5577888886555444 4455666 55555543 1 1111 1 1111 1 3457888667666
Q ss_pred EEEEEcC------CeEEEEECCCCeEEEEEe---------------CCCCCEEEEEEcCCCCEEEEEe------CC--e-
Q 003279 694 ILAAAIE------NYISILDVETQVCRLKLQ---------------GHKNQVHSVCWNTSGEYLASVS------DE--L- 743 (834)
Q Consensus 694 ll~~s~d------g~I~iwDl~t~~~~~~l~---------------~h~~~I~sl~~spdg~~Lasgs------Dg--~- 743 (834)
+++.-.+ ..|..+|.. +.....+. ..+..+.+++++|+|+.|+++. |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 6666666 789999977 54443331 1344678999999999665543 22 1
Q ss_pred ------EEEEEcCCCC----CceeEEEeec-----CCCceEEEEEeCCCCEEEE
Q 003279 744 ------VRVWSIGSGS----KGECIHELSC-----TGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 744 ------I~IwDl~s~~----~~~~i~~~~~-----~~~~I~svafspdg~~L~s 782 (834)
++|+.+.... .......+.. ....+..+.+-+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 4555444321 1122333332 4677899999999986654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.03 E-value=6.1 Score=47.09 Aligned_cols=170 Identities=11% Similarity=0.149 Sum_probs=83.7
Q ss_pred CcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE---EEeCCCCCEEEEEEcCCCCE
Q 003279 660 SEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL---KLQGHKNQVHSVCWNTSGEY 735 (834)
Q Consensus 660 g~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~---~l~~h~~~I~sl~~spdg~~ 735 (834)
-.|+||++. |..+..+. .+..+..+.|+.+ ..|++...+|.+++|++-...... -+......|..+.|..+|-.
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVa 141 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVA 141 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceE
Confidence 457777776 44444333 2457888999876 678889999999999986432211 01112234555555556655
Q ss_pred EEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEE-EeCCCC--EEEEEEcCCeEEEEECC--CCeEEEeccCCCCeE
Q 003279 736 LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV-FHPTFP--SLLVIGCYETLELWNMT--ENKTLTLSAHDKLVS 810 (834)
Q Consensus 736 LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sva-fspdg~--~L~sgs~dg~I~Iwdl~--~~~~~~l~~h~~~V~ 810 (834)
+.+.++..+.+.++..... .....+........+-. +.|... .++-....--..++... ......+......+.
T Consensus 142 vlt~~g~v~~i~~~~~~~~-~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ 220 (829)
T KOG2280|consen 142 VLTVSGQVILINGVEEPKL-RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVV 220 (829)
T ss_pred EEecCCcEEEEcCCCcchh-hhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEE
Confidence 5544444445544443210 11111111111111111 122111 11111100011112222 222223333346678
Q ss_pred EEEEeCCCCEEEEEecCCcEEE
Q 003279 811 SLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 811 ~lafspdg~~LaSgs~DG~I~I 832 (834)
.+..||+.++|+-=..+|.|.+
T Consensus 221 ki~VS~n~~~laLyt~~G~i~~ 242 (829)
T KOG2280|consen 221 KISVSPNRRFLALYTETGKIWV 242 (829)
T ss_pred EEEEcCCcceEEEEecCCcEEE
Confidence 8888999998888888887765
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=90.94 E-value=26 Score=37.87 Aligned_cols=194 Identities=9% Similarity=0.078 Sum_probs=108.8
Q ss_pred CeEEEEEccCCCcEEEEEeCCCcEEEEECC------CC-ceeeEeec------CCCeeEEEEecCC------------CE
Q 003279 639 TVMSLDFHPSKEDLLCSCDNNSEIRYWSIN------NG-SCAGVFKC------QSGATQMRFQPRL------------GR 693 (834)
Q Consensus 639 ~V~sl~fspdg~~llasgs~Dg~I~lwDl~------s~-~~i~~~~~------~~~i~~l~~sp~g------------~~ 693 (834)
.-+.|+++|.+. +.++....+...+||.. .. ..+-.+.. ....+.+.|+... ..
T Consensus 24 N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 457899999875 55566667889999987 11 22233331 2345666666432 23
Q ss_pred EEEEEcCCeEEEEECCCCe-----EEEEEeC-CCCCE-EEEEEcC--CCCEEEEEe--CCeEEEEEcCCCCCceeEEEee
Q 003279 694 ILAAAIENYISILDVETQV-----CRLKLQG-HKNQV-HSVCWNT--SGEYLASVS--DELVRVWSIGSGSKGECIHELS 762 (834)
Q Consensus 694 ll~~s~dg~I~iwDl~t~~-----~~~~l~~-h~~~I-~sl~~sp--dg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~ 762 (834)
++.+++||+|.-|...-.. .+..+.. ....| ..+++-. .+.+|+.+. .++|.|||-.-.... .-..+.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~-~~g~F~ 181 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP-LPGSFI 181 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc-CCCCcc
Confidence 7888999999999854321 1222221 12333 3555543 467888777 889999986533110 000000
Q ss_pred -----cCCCc-----------eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEec--cCCCCeEEEEEeC------CC
Q 003279 763 -----CTGNK-----------FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS--AHDKLVSSLAAST------VN 818 (834)
Q Consensus 763 -----~~~~~-----------I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~--~h~~~V~~lafsp------dg 818 (834)
..-.+ |+-..-.++...=+.+..-|.|-+||+...-+.++. +.-...+.|+..| .+
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg 261 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSG 261 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCC
Confidence 00001 111111222222233444568999998776555442 3445667777765 35
Q ss_pred CEEEEEecCCcEEEeC
Q 003279 819 GMVASASHDKCVKIWK 834 (834)
Q Consensus 819 ~~LaSgs~DG~I~IWd 834 (834)
.+|+---.||+|..||
T Consensus 262 ~lLVGNFGDG~InaFD 277 (336)
T TIGR03118 262 ALLVGNFGDGTINAYD 277 (336)
T ss_pred CeEEeecCCceeEEec
Confidence 5666656799999887
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.59 E-value=6.8 Score=49.78 Aligned_cols=229 Identities=13% Similarity=0.101 Sum_probs=109.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCC-CeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceee
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 631 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~-~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~ 631 (834)
.....++|+|.-.++|.++.+|.|.+|-...-+.+.....-.. .+..+.|......+.....+..+.+|.......
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~--- 112 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTG--- 112 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccce---
Confidence 3456789999999999999999999997554333322211110 122222222222233334455566665543221
Q ss_pred eeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec--CCCeeEE-EEecCCCEEEEEEcCCeEEEEEC
Q 003279 632 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQM-RFQPRLGRILAAAIENYISILDV 708 (834)
Q Consensus 632 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~--~~~i~~l-~~sp~g~~ll~~s~dg~I~iwDl 708 (834)
..+...+++....+- -.++.+ ..+.+++||..-......... ....... ...+..-.+..--.+-.-.++-+
T Consensus 113 --~~~~~~~~~~~~~~~--~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 187 (993)
T KOG1983|consen 113 --VFLKQEITSFVTDPP--PDWLIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISL 187 (993)
T ss_pred --eecCCcceeccCCCC--cchhcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceeec
Confidence 112233444333222 112334 778888888753221111110 0000000 00000000000000000111111
Q ss_pred CCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 003279 709 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET 788 (834)
Q Consensus 709 ~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~ 788 (834)
.... ..+.-+..++.+..+......+.....+.+.+|+.... .....+..... .+..++..++++..|+.
T Consensus 188 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~v~~h~Dgs 257 (993)
T KOG1983|consen 188 PDAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASK---YVQSAYLPNGQ-----LESRDGSHFVSYHTDGS 257 (993)
T ss_pred cccc--ccccccccccceeeeecCCCcceeeeeeeeeehhcccc---cchhhcccccc-----cCccCCceEEEEEecCC
Confidence 1001 12223555666666666666666666777777776544 12222221111 22788899999999999
Q ss_pred EEEEECCCCeE
Q 003279 789 LELWNMTENKT 799 (834)
Q Consensus 789 I~Iwdl~~~~~ 799 (834)
+.+||...++.
T Consensus 258 ~~fWd~s~g~~ 268 (993)
T KOG1983|consen 258 YAFWDVSSGKL 268 (993)
T ss_pred EEeeecCCCce
Confidence 99999988754
|
|
| >PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C | Back alignment and domain information |
|---|
Probab=90.53 E-value=0.077 Score=56.51 Aligned_cols=6 Identities=50% Similarity=0.584 Sum_probs=0.0
Q ss_pred CCcchh
Q 003279 49 GGFLFE 54 (834)
Q Consensus 49 ~~fL~e 54 (834)
|.||-|
T Consensus 276 D~~L~e 281 (468)
T PF11498_consen 276 DTFLNE 281 (468)
T ss_dssp ------
T ss_pred HHHHhh
Confidence 344544
|
elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D. |
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=90.49 E-value=43 Score=40.22 Aligned_cols=190 Identities=9% Similarity=0.036 Sum_probs=104.7
Q ss_pred CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce----eeEeecCCCeeEEEEecCCCEEEEEEc--CC--eEEEEECCC
Q 003279 639 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFKCQSGATQMRFQPRLGRILAAAI--EN--YISILDVET 710 (834)
Q Consensus 639 ~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~----i~~~~~~~~i~~l~~sp~g~~ll~~s~--dg--~I~iwDl~t 710 (834)
.+.+++.++++..+.+.......+++..+..+.. .........++.-.|..++ .+.++.. ++ .++++.- +
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~-~ 441 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQG-D 441 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecCCCCCceEEEEEcC-C
Confidence 6788999999876665544334666665543332 1122223456677777776 4444432 12 2555543 3
Q ss_pred CeEEE-EEeCCCC-CEEEEEEcCCCCEEEEEeC----CeEEEEEcCCCCCce-eE---EEeecCCCceEEEEEeCCCCEE
Q 003279 711 QVCRL-KLQGHKN-QVHSVCWNTSGEYLASVSD----ELVRVWSIGSGSKGE-CI---HELSCTGNKFHSCVFHPTFPSL 780 (834)
Q Consensus 711 ~~~~~-~l~~h~~-~I~sl~~spdg~~LasgsD----g~I~IwDl~s~~~~~-~i---~~~~~~~~~I~svafspdg~~L 780 (834)
++... ......+ .|..+..|+||-.++.-.+ +.|+|--+....... .+ ..+......+.+++|..++..+
T Consensus 442 G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~sL~ 521 (599)
T PRK13613 442 GEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGDSQLV 521 (599)
T ss_pred CcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCCCEEE
Confidence 43321 1112233 7999999999987776542 566665554322221 12 1222233458999999999866
Q ss_pred EEEEc---CCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCC-EEEEEecCCcE
Q 003279 781 LVIGC---YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCV 830 (834)
Q Consensus 781 ~sgs~---dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~-~LaSgs~DG~I 830 (834)
+.+.. +..+++.++...... .....-..+..|+-..+.. .|+.+..++.|
T Consensus 522 Vlg~~~~~~~~v~~v~vdG~~~~~~~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 522 VLGREEGGVQQARYVQVDGSTPPASAPAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred EEeccCCCCcceEEEecCCcCcccccccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 65532 235666666644332 1223445566677776665 55553455544
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=90.45 E-value=1.5 Score=45.48 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=53.0
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCeEEEEE-------e-------CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003279 687 FQPRLGRILAAAIENYISILDVETQVCRLKL-------Q-------GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 752 (834)
Q Consensus 687 ~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l-------~-------~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~ 752 (834)
+...+.++++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-++|..+.|+..-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4456789999999999999999998765432 1 2446788899999999888888888999987654
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.43 E-value=0.032 Score=62.29 Aligned_cols=141 Identities=16% Similarity=0.288 Sum_probs=99.6
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEE
Q 003279 682 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH 759 (834)
Q Consensus 682 i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~ 759 (834)
.....|.+.+..+++++.+..+..||-.... ..... .++....++|+.++..++... .+.+++||+.+... .
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~-~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt----q 110 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQV-ILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT----Q 110 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcce-ecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH----H
Confidence 4456777888889999999999999865432 22222 345566889998888766654 78999999987521 1
Q ss_pred EeecC-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEecc-CCCCeEEEEEeCCCCEEEEEecCCc
Q 003279 760 ELSCT-GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-HDKLVSSLAASTVNGMVASASHDKC 829 (834)
Q Consensus 760 ~~~~~-~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~-h~~~V~~lafspdg~~LaSgs~DG~ 829 (834)
.+... ...-.-+.|++.+..++.+...+.+.||+..+.+.+...+ |...+++++|.+.+ +.+.++.|..
T Consensus 111 qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~ 181 (615)
T KOG2247|consen 111 QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNT 181 (615)
T ss_pred HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHH
Confidence 11111 1111226899999999999999999999998877775555 99999999999876 4555555543
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=90.06 E-value=37 Score=38.17 Aligned_cols=181 Identities=12% Similarity=0.173 Sum_probs=103.0
Q ss_pred CcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEec----CCCE--EEEEEc-C---CeEEEEECC--CCeEEEEE
Q 003279 650 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP----RLGR--ILAAAI-E---NYISILDVE--TQVCRLKL 717 (834)
Q Consensus 650 ~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp----~g~~--ll~~s~-d---g~I~iwDl~--t~~~~~~l 717 (834)
+.+++....++-+.+||+. |+.+..+.. +..+.+.+-. .++. |++++. + ..|++|.+. ++. +..+
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~~-Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v 144 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLPV-GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDV 144 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE-S-S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeecC-CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEc
Confidence 3466677888899999998 555555543 4444443322 3333 344443 2 468888664 443 2232
Q ss_pred eC-------CCCCEEEEEEc--C-CCCEEEEE-e-CCeEEEEEcCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEE
Q 003279 718 QG-------HKNQVHSVCWN--T-SGEYLASV-S-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLL 781 (834)
Q Consensus 718 ~~-------h~~~I~sl~~s--p-dg~~Lasg-s-Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I~svafspdg~~L~ 781 (834)
.. ....++.+|+. + +|.+.+.. . +|.+..|.+..... .+.++++.. ...+..|+.......|+
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLY 223 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEE
Confidence 21 12346777773 3 46655444 4 88888888753222 245666665 45899999999999999
Q ss_pred EEEcCCeEEEEECCCC-----eEEEec---cCCCCeEEEEEeC--CCC-EEEE-EecCCcEEEeC
Q 003279 782 VIGCYETLELWNMTEN-----KTLTLS---AHDKLVSSLAAST--VNG-MVAS-ASHDKCVKIWK 834 (834)
Q Consensus 782 sgs~dg~I~Iwdl~~~-----~~~~l~---~h~~~V~~lafsp--dg~-~LaS-gs~DG~I~IWd 834 (834)
++-.+.-|+-|+.+.. ..+... .....|..|++-. +++ ||+. .-.+++..|||
T Consensus 224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 9999989999988622 222221 2345677777743 443 5544 44566777774
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.70 E-value=0.23 Score=60.44 Aligned_cols=89 Identities=24% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH----------------------HHHhhhccccCCCCCCCCCC----
Q 003279 86 AREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQ----------------------QQQQQRRDSTQHLNDTGDDL---- 139 (834)
Q Consensus 86 ~~~qqqqqqqq~q~~qq~qq~q~qq~~~qqq~qq----------------------qqq~q~~~~~~~~~~~~~~~---- 139 (834)
.++|||||.|..|++|.-|||||.+||+|++=|| |+|||+--.+++.-|...+-
T Consensus 1855 ~q~~qqq~iq~lq~~q~lqqqqq~~qq~~~~~~q~~sq~~q~p~~~~s~~~~~~~~~~~q~~~~~~~q~~g~~~qgs~~y 1934 (2131)
T KOG4369|consen 1855 IQQQQQQQIQHLQQQQALQQQQQRIQQFQQQYQQHQSQSSQQPSDLMSSKFSMLQSQQQQQQLYNQMQSLGQDGQGSNLY 1934 (2131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCCCCcccccccchhccCcccCCccccccccccccccccccc
Q ss_pred -----------------CCchhhHHHHHHHHHhhhcCCCCCCcccccccccc
Q 003279 140 -----------------RPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPR 174 (834)
Q Consensus 140 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (834)
.-++++.+|..-|-.-..+.|...-...-++.|+|
T Consensus 1935 ~~~~~~~l~h~e~~~g~~~~~~s~~a~s~~~~~~~~~~~~lg~~~~~s~~~~ 1986 (2131)
T KOG4369|consen 1935 NHLAAQLLTHQESSTGAPGPTSSQLANSYYPSPSYTDASVLGQISMPSLSQR 1986 (2131)
T ss_pred hhHHHHHHHhhhccCCCCCCCCCccccCCCCCccccccccccccccchhhhc
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=89.68 E-value=25 Score=36.21 Aligned_cols=102 Identities=7% Similarity=0.146 Sum_probs=66.4
Q ss_pred CcEEEEEeCCCcEEEEECC--CCceeeEeecCCCeeEEEEecCCCEEEEEEcCC------eEEEE-ECCC----CeEEE-
Q 003279 650 EDLLCSCDNNSEIRYWSIN--NGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN------YISIL-DVET----QVCRL- 715 (834)
Q Consensus 650 ~~llasgs~Dg~I~lwDl~--s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg------~I~iw-Dl~t----~~~~~- 715 (834)
+.+|++ ...+.|.+|++. .......|..-+.|..+.++..|+++++--.+. .+++| +.+. ..++.
T Consensus 29 d~Lfva-~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVA-ASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEE-cCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 334443 557889999988 445667777788999999999999999987642 45554 2221 11111
Q ss_pred EEeCC---------------------CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003279 716 KLQGH---------------------KNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 752 (834)
Q Consensus 716 ~l~~h---------------------~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~ 752 (834)
.+-|| ...+.+++..|-.--|+.|+++.+.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEE
Confidence 22221 23556777777544566677888999987653
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=89.63 E-value=30 Score=39.58 Aligned_cols=30 Identities=13% Similarity=0.373 Sum_probs=19.6
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 767 KFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 767 ~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
.|..++..+..+.+++...++.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 366666666667777777777777777753
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=89.47 E-value=56 Score=39.34 Aligned_cols=239 Identities=10% Similarity=0.088 Sum_probs=0.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEEEec-cCCCCeEEEEECCCCC---EEEEE-eCCCeEEEEecCCC--
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLE-EHTQWITDVRFSPSLS---RLATS-SADRTVRVWDTENP-- 626 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~-t~~~~~~l~-~h~~~I~~l~fspdg~---~Latg-s~Dg~I~IWDl~s~-- 626 (834)
+.+..++|+...+-.|=....|.-|=+. +.+.+..+. ..+..|.||....... +.++| ...+.-++-.+..+
T Consensus 30 ~vs~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~ 109 (670)
T PF10395_consen 30 QVSDDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVG 109 (670)
T ss_pred eeecccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCc
Q ss_pred ----------CceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC----------CCCceeeEeecCCCeeEEE
Q 003279 627 ----------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI----------NNGSCAGVFKCQSGATQMR 686 (834)
Q Consensus 627 ----------~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl----------~s~~~i~~~~~~~~i~~l~ 686 (834)
......+.- ...|..|.|..++. .+++.-.+|.|.+||. -..........+.-|....
T Consensus 110 ~~~~~~~~~e~~~~~~~kl-~~kvv~Ik~~~~~~-~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~ 187 (670)
T PF10395_consen 110 STEDGTVNSETTNEFELKL-DDKVVGIKFSSDGK-IIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFE 187 (670)
T ss_pred cccccccCccccceEEEEc-ccceEEEEEecCCC-EEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccc
Q ss_pred EecCCCEEEEEEc-CC---eEEEEEC-CCCeEEEEEe---CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeE
Q 003279 687 FQPRLGRILAAAI-EN---YISILDV-ETQVCRLKLQ---GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECI 758 (834)
Q Consensus 687 ~sp~g~~ll~~s~-dg---~I~iwDl-~t~~~~~~l~---~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i 758 (834)
......++++.+. ++ ..+++.+ .....+..+. .+........|.-....|+.-.+++|.+|++........+
T Consensus 188 ~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l~~~~i~~ysip~f~~~~tI 267 (670)
T PF10395_consen 188 LENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQLSKKTISSYSIPNFQIQKTI 267 (670)
T ss_pred cccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEEeCCEEEEEEcCCceEEEEE
Q ss_pred EEeecCCCc-eEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 759 HELSCTGNK-FHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 759 ~~~~~~~~~-I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
..-..-... -..+.+.|-...=+.-+.++.|++.|+.
T Consensus 268 ~l~~ii~~~~~~~vSl~~~s~nRvLLs~~nkIyLld~~ 305 (670)
T PF10395_consen 268 SLPSIIDKESDDLVSLKPPSPNRVLLSVNNKIYLLDLK 305 (670)
T ss_pred EechhhccccccceEeecCCCCeEEEEcCCEEEEEeeh
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=88.79 E-value=8.8 Score=46.35 Aligned_cols=142 Identities=13% Similarity=0.009 Sum_probs=0.0
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEe------------------------CCCCCEEEEEEcCCCCEEEEEe-CCeEEE
Q 003279 692 GRILAAAIENYISILDVETQVCRLKLQ------------------------GHKNQVHSVCWNTSGEYLASVS-DELVRV 746 (834)
Q Consensus 692 ~~ll~~s~dg~I~iwDl~t~~~~~~l~------------------------~h~~~I~sl~~spdg~~Lasgs-Dg~I~I 746 (834)
..++..+..+.|.||+.+.-....... .|.-...-+..--+..+|++|. ||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Q ss_pred EEc-----------------CCCCCceeEEEeecCCCceEEEEEe--CCCCEEEEEEcCCeEEEEECCCCeEE----Eec
Q 003279 747 WSI-----------------GSGSKGECIHELSCTGNKFHSCVFH--PTFPSLLVIGCYETLELWNMTENKTL----TLS 803 (834)
Q Consensus 747 wDl-----------------~s~~~~~~i~~~~~~~~~I~svafs--pdg~~L~sgs~dg~I~Iwdl~~~~~~----~l~ 803 (834)
|.+ ......++...+.... ..+.++++ ...++||+++....|.||-....... .-.
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~-SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGA-SAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEeecCC-ceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Q ss_pred cCCCCeEEEEEeCCC------CEEEEEecCCcEEEeC
Q 003279 804 AHDKLVSSLAASTVN------GMVASASHDKCVKIWK 834 (834)
Q Consensus 804 ~h~~~V~~lafspdg------~~LaSgs~DG~I~IWd 834 (834)
.|...|.+|+|-++. ..|++++-.|.|.+|+
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 834 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 5e-25 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 9e-21 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 1e-20 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 1e-20 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 1e-20 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 2e-20 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 2e-20 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-20 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-20 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-20 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-20 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-20 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 2e-20 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 3e-20 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 3e-20 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 6e-20 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 6e-20 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 9e-20 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 3e-19 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 8e-16 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 2e-15 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-14 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 4e-05 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 2e-12 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 3e-12 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 9e-07 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 7e-11 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 1e-10 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 3e-04 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 1e-10 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 4e-04 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 4e-10 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 2e-04 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 5e-10 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 4e-06 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 6e-04 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 5e-10 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 5e-10 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 2e-04 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 7e-10 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 4e-04 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 7e-10 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 3e-07 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 8e-10 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 1e-06 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 9e-10 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 1e-06 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 1e-09 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 2e-08 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 2e-08 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 2e-08 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 3e-08 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 3e-08 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 5e-07 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 4e-06 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 5e-07 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 4e-06 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 5e-07 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 1e-06 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 5e-06 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 1e-06 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 5e-06 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-06 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 2e-06 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 2e-06 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 2e-06 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 3e-06 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 8e-06 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 1e-05 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 2e-05 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 2e-05 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 3e-05 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 4e-05 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 2e-04 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 4e-05 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 4e-05 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 5e-05 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 6e-05 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 1e-04 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 1e-04 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 2e-04 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 1e-04 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 2e-04 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 2e-04 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 3e-04 | ||
| 3zwl_B | 369 | Structure Of Eukaryotic Translation Initiation Fact | 4e-04 | ||
| 2pm7_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 4e-04 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 7e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369 | Back alignment and structure |
|
| >pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 834 | |||
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.98 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.98 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.97 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.95 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.95 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.95 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.94 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.94 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.94 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.93 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.93 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.92 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.92 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.92 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.92 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.92 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.91 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.91 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.91 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.91 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.91 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.9 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.9 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.89 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.89 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.89 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.88 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.88 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.88 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.88 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.87 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.87 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.86 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.86 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.86 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.85 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.84 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.84 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.83 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.83 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.82 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.81 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.81 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.79 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.78 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.78 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.78 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.77 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.76 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.75 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.75 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.74 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.73 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.73 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.72 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.72 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.71 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.71 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.7 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.7 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.69 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.68 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.68 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.67 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.66 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.65 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.65 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.65 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.64 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.63 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.62 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.62 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.61 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.6 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.6 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.57 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.57 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.56 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.56 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.55 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.55 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.52 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.51 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.49 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.49 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.48 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.46 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.45 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.45 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.44 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.44 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.42 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.42 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.4 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.39 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.38 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.37 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.37 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.33 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.33 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.31 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.26 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.24 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.24 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.24 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.24 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.23 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.21 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.21 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.21 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.2 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.18 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.18 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.1 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.08 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.07 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.07 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.03 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.03 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.01 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.98 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.95 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.95 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.94 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.93 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.89 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.87 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.86 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.86 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.85 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.84 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.79 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.77 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.76 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.76 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.74 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.73 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.72 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.72 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.71 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.7 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.7 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.65 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.64 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.63 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.63 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.62 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.6 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.59 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.56 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.56 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.54 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.54 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.53 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.52 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.5 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.5 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.44 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.43 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.42 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.42 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.41 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.4 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.39 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.35 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.29 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.21 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.19 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.16 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.16 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.14 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.04 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.04 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.03 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.99 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.97 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.97 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.95 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.95 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.94 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.93 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.93 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.92 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.91 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.88 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.86 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.84 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.84 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.81 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.78 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.75 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.75 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.74 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.68 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.67 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.66 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.57 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.49 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.44 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.38 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.35 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.33 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 97.33 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.32 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 97.31 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.3 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.29 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 97.22 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.22 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.16 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 97.16 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.15 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.12 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.95 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.94 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.86 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.78 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.73 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.68 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.67 | |
| 3iot_A | 449 | Maltose-binding protein, huntingtin fusion protei; | 96.66 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 96.49 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.44 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.43 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.38 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.37 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.35 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.34 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.1 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 95.99 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 95.9 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.67 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 95.52 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 95.5 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 95.25 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 95.13 | |
| 3iot_A | 449 | Maltose-binding protein, huntingtin fusion protei; | 95.12 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 94.97 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 94.76 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 94.08 | |
| 1wp5_A | 323 | Topoisomerase IV; broken beta-propeller, hairpin-i | 94.07 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 93.98 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 93.5 | |
| 1suu_A | 312 | DNA gyrase subunit A; topoisomerase,DNA gyrase, be | 93.29 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 93.06 | |
| 1zi0_A | 307 | DNA gyrase subunit A; beta pinwheel, topoisomerase | 92.61 | |
| 3l6v_A | 370 | GYRA, DNA gyrase subunit A; gyrase A C-terminal do | 92.32 | |
| 1sqj_A | 789 | OXG-RCBH, oligoxyloglucan reducing-END-specific ce | 91.94 | |
| 3l6v_A | 370 | GYRA, DNA gyrase subunit A; gyrase A C-terminal do | 91.89 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 91.74 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 91.06 | |
| 1sqj_A | 789 | OXG-RCBH, oligoxyloglucan reducing-END-specific ce | 91.04 | |
| 1zi0_A | 307 | DNA gyrase subunit A; beta pinwheel, topoisomerase | 90.85 | |
| 1suu_A | 312 | DNA gyrase subunit A; topoisomerase,DNA gyrase, be | 88.97 | |
| 3mvd_K | 423 | Regulator of chromosome condensation; protein-DNA | 88.75 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 87.95 | |
| 1uuj_A | 88 | Platelet-activating factor acetylhydrolase IB ALP | 87.19 | |
| 1wp5_A | 323 | Topoisomerase IV; broken beta-propeller, hairpin-i | 85.29 | |
| 2xtc_A | 90 | F-box-like/WD repeat-containing protein TBL1X; tra | 85.29 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 81.57 |
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=374.57 Aligned_cols=288 Identities=19% Similarity=0.368 Sum_probs=263.9
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 003279 542 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 621 (834)
Q Consensus 542 ~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 621 (834)
......+.+|.+.|++++|+||+++|++|+.||+|+|||+.+++.+..+..|...|.+++|+|++.+|++++.|+.|++|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC---ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEE
Q 003279 622 DTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 622 Dl~s~~---~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~ 697 (834)
|+.+.. .....+.+|...|.++.|++++. +++++.|+.|++||+++++++..+. +...|.+++|+|++.+++++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 998754 23466789999999999998763 6789999999999999999988887 45679999999999999999
Q ss_pred EcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec--CCCceEEEEEe
Q 003279 698 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVFH 774 (834)
Q Consensus 698 s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~--~~~~I~svafs 774 (834)
+.|+.|++||++++.++..+.+|...|.+++|+|++.+|++++ |+.|++||++++ ..+..+.. +...|.+++|+
T Consensus 203 ~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s 279 (340)
T 1got_B 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSFS 279 (340)
T ss_dssp ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEEC
T ss_pred eCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC---cEEEEEccCCcccceEEEEEC
Confidence 9999999999999999999999999999999999999999999 999999999987 45555443 23479999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 775 PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 775 pdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++.+|++|+.||.|+|||
T Consensus 280 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999888776 7789999999999999999999999999999997
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-42 Score=389.03 Aligned_cols=284 Identities=26% Similarity=0.486 Sum_probs=266.8
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 625 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s 625 (834)
..+.+|.++|++++|+|++.+|++|+.||+|+|||+.+++.+..+.+|.+.|.+++|+|++++|++|+.|++|+|||+.+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEE
Q 003279 626 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYIS 704 (834)
Q Consensus 626 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~ 704 (834)
.. .+..+.+|...|.+++|+|++. +|++|+.|+.|++||++++.++..+.. ...+.++.+++++..|++++.|+.|+
T Consensus 182 ~~-~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~ 259 (410)
T 1vyh_C 182 FE-CIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 259 (410)
T ss_dssp SC-EEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred Cc-eeEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence 55 4788899999999999999976 667999999999999999999888875 45699999999999999999999999
Q ss_pred EEECCCCeEEEEEeCCCCCEEEEEEcCC--------------------CCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003279 705 ILDVETQVCRLKLQGHKNQVHSVCWNTS--------------------GEYLASVS-DELVRVWSIGSGSKGECIHELSC 763 (834)
Q Consensus 705 iwDl~t~~~~~~l~~h~~~I~sl~~spd--------------------g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 763 (834)
+||++++.+...+.+|...|.+++|+|+ +.+|++++ |+.|++||++++ .++..+.+
T Consensus 260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---~~~~~~~~ 336 (410)
T 1vyh_C 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLVG 336 (410)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEEEC
T ss_pred EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC---ceEEEEEC
Confidence 9999999999999999999999999996 67899998 999999999988 78889999
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 764 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 764 ~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|...|.+++|+|++.+|++++.|+.|++||+.+++.+ .+.+|...|++++|+|++.+|++|+.||+|+||+
T Consensus 337 h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 337 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 9999999999999999999999999999999988766 6779999999999999999999999999999997
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-41 Score=367.34 Aligned_cols=286 Identities=18% Similarity=0.324 Sum_probs=261.9
Q ss_pred EEEEecCCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEeCCCCeE--EEEeccCCCCeEEEEECCCCCEEEEEeCCCe
Q 003279 544 EFQLIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRT 617 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpd----g~~Lasgs~Dg~I~IWd~~t~~~--~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~ 617 (834)
.+..+.+|.+.|++|+|+++ +.+|++|+.|++|+|||+.+.+. ...+.+|...|.+++|++++.++++++.|++
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 35677899999999999985 67999999999999999987654 4568999999999999999999999999999
Q ss_pred EEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEE
Q 003279 618 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILA 696 (834)
Q Consensus 618 I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~ 696 (834)
|++||+.++. .+..+..|...+.+++|+|++. +|++++.|+.|++||+++++....+.. ...+.+++|+|++++|++
T Consensus 104 i~lWd~~~~~-~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las 181 (321)
T 3ow8_A 104 IRLWDLENGK-QIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS 181 (321)
T ss_dssp EEEEETTTTE-EEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred EEEEECCCCC-EEEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE
Confidence 9999999865 4777888899999999999977 667999999999999999988877765 456999999999999999
Q ss_pred EEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003279 697 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 775 (834)
Q Consensus 697 ~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp 775 (834)
++.|+.|++||+++++.+..+.+|...|.+++|+|++.+|++++ |+.|+|||++++ ..+..+..|...|.+++|+|
T Consensus 182 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~sp 258 (321)
T 3ow8_A 182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA---NLAGTLSGHASWVLNVAFCP 258 (321)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECT
T ss_pred EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc---ceeEEEcCCCCceEEEEECC
Confidence 99999999999999999999999999999999999999999999 999999999987 67788899999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 776 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 776 dg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++.+|++++.||.|+|||
T Consensus 259 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 259 DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 9999999999999999999999887 6779999999999999999999999999999997
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-40 Score=365.17 Aligned_cols=289 Identities=17% Similarity=0.280 Sum_probs=261.4
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 003279 542 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 621 (834)
Q Consensus 542 ~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 621 (834)
......+.+|.+.|+|++|+|++++||+|+.||+|+|||..+++....+..|...|.+++|+|++.+|++++.|+.|++|
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC-----ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEec--CCCE
Q 003279 622 DTENPD-----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQP--RLGR 693 (834)
Q Consensus 622 Dl~s~~-----~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp--~g~~ 693 (834)
++.... .....+.+|...|.+++|+|++. .|++++.|++|++||+++++++..+.. ...+.++.|+| ++..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 986432 23456778999999999999976 566999999999999999999988874 56789999987 4689
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC--CCceEE
Q 003279 694 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--GNKFHS 770 (834)
Q Consensus 694 ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~--~~~I~s 770 (834)
|++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++ |++|++||++.. ..+..+..+ ...+.+
T Consensus 213 l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~~~~~~~~~~ 289 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD---REVAIYSKESIIFGASS 289 (354)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEcCCCcccceeE
Confidence 99999999999999999999999999999999999999999999999 999999999887 445444432 347899
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 771 CVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 771 vafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++|+|++.+|++++.|+.|++||+.+++.+ .+.+|...|++++|+|++++|++|+.||.|+||+
T Consensus 290 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 290 VDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999999888776 6779999999999999999999999999999997
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-41 Score=376.42 Aligned_cols=291 Identities=17% Similarity=0.337 Sum_probs=260.6
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 003279 541 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 620 (834)
Q Consensus 541 ~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 620 (834)
.....+++.+|.+.|++++|+|++++|++|+.|++|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.|++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCC------ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee------cCCCeeEEEEe
Q 003279 621 WDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQ 688 (834)
Q Consensus 621 WDl~s~~------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~------~~~~i~~l~~s 688 (834)
||+.+.. .....+.+|...|.++.|.|++...|++|+.|+.|++||+++++.+..+. +...+.++.|+
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence 9997532 12456789999999999999877788899999999999999999887763 34568999998
Q ss_pred c-CCCEEEEEEcCCeEEEEECC-CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC
Q 003279 689 P-RLGRILAAAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 765 (834)
Q Consensus 689 p-~g~~ll~~s~dg~I~iwDl~-t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~ 765 (834)
+ ++..|++++.|+.|++||++ ....+..+.+|...|.+++|+|++.+|++++ |++|++||++++ ..+..+..+.
T Consensus 215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~---~~~~~~~~~~ 291 (380)
T 3iz6_a 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNREP 291 (380)
T ss_dssp SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT---EEEEEECCCC
T ss_pred cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC---cEEEEecccc
Confidence 7 78899999999999999998 4577888999999999999999999999999 999999999987 5555554332
Q ss_pred -------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-Ee----ccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 766 -------NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL----SAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 766 -------~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l----~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
..|.+++|+|++.+|++++.|+.|++||+..++.+ .+ .+|.+.|++++|+|++.+|++|+.||.|+||
T Consensus 292 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW 371 (380)
T 3iz6_a 292 DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371 (380)
T ss_dssp SSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred cccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEE
Confidence 24889999999999999999999999999988776 33 5799999999999999999999999999999
Q ss_pred C
Q 003279 834 K 834 (834)
Q Consensus 834 d 834 (834)
+
T Consensus 372 ~ 372 (380)
T 3iz6_a 372 A 372 (380)
T ss_dssp E
T ss_pred e
Confidence 6
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=384.96 Aligned_cols=329 Identities=18% Similarity=0.280 Sum_probs=268.0
Q ss_pred ccCCCceEEeccCCCCeEEeecCCCCCCC------------------------------cccccccccCCCeeeeEEEEe
Q 003279 499 LTDMDRFVDDGSLDDNVESFLSPDDADPR------------------------------DRVGRSAEVGKGFTFTEFQLI 548 (834)
Q Consensus 499 ~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~------------------------------~~~~~~~~~~~g~~~~~~~~l 548 (834)
+.....++++|+.|++|++|+........ +..+.++.+..+. ....+
T Consensus 67 ~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~---~~~~l 143 (611)
T 1nr0_A 67 TSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT---SNGNL 143 (611)
T ss_dssp ECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC---BCBCC
T ss_pred ECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC---Cccee
Confidence 34445899999999999999764321100 0001111122221 23457
Q ss_pred cCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC
Q 003279 549 PASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 627 (834)
Q Consensus 549 ~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~ 627 (834)
.+|.+.|++++|+|++. +|++|+.|++|++||..+++++..+.+|...|++++|+|++++|++++.|++|+|||+.++.
T Consensus 144 ~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~ 223 (611)
T 1nr0_A 144 TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT 223 (611)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc
Confidence 89999999999999987 69999999999999999999999999999999999999999999999999999999998766
Q ss_pred ceeeeec-------cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-----------------------
Q 003279 628 YSLRTFT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----------------------- 677 (834)
Q Consensus 628 ~~i~~~~-------~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~----------------------- 677 (834)
. +..+. +|...|.+++|+|++. +|++++.|++|++||+.+++++..+.
T Consensus 224 ~-~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 301 (611)
T 1nr0_A 224 K-TGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS 301 (611)
T ss_dssp E-EEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEE
T ss_pred E-eeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEe
Confidence 4 44442 7999999999999976 67799999999999999887655432
Q ss_pred ---------------------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE-e-----------------
Q 003279 678 ---------------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-Q----------------- 718 (834)
Q Consensus 678 ---------------------~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l-~----------------- 718 (834)
+...|.+++|+|++.+|++++.|+.|++||+.++.+...+ .
T Consensus 302 ~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l 381 (611)
T 1nr0_A 302 ANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 381 (611)
T ss_dssp TTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE
T ss_pred CCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcE
Confidence 3456899999999999999999999999999876443221 0
Q ss_pred ----------------------------------------------------------------CCCCCEEEEEEcCCCC
Q 003279 719 ----------------------------------------------------------------GHKNQVHSVCWNTSGE 734 (834)
Q Consensus 719 ----------------------------------------------------------------~h~~~I~sl~~spdg~ 734 (834)
.|...+.+++|+|||+
T Consensus 382 ~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~ 461 (611)
T 1nr0_A 382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ 461 (611)
T ss_dssp EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC
T ss_pred EEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC
Confidence 0234578899999999
Q ss_pred EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-CeEEE---eccCCCCe
Q 003279 735 YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE-NKTLT---LSAHDKLV 809 (834)
Q Consensus 735 ~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~-~~~~~---l~~h~~~V 809 (834)
+|++++ |++|++||+.++.. ..+.. ..|...|.+++|+|++.+|++++.|+.|++||+.+ ++... +..|...|
T Consensus 462 ~lasgs~D~~v~lwd~~~~~~-~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V 539 (611)
T 1nr0_A 462 FVAVGGQDSKVHVYKLSGASV-SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV 539 (611)
T ss_dssp EEEEEETTSEEEEEEEETTEE-EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCE
T ss_pred EEEEeCCCCeEEEEEccCCce-eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccce
Confidence 999999 99999999987521 22333 67889999999999999999999999999999987 55543 23499999
Q ss_pred EEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 810 SSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 810 ~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.+++|+||+++||+|+.|++|+|||
T Consensus 540 ~~v~fspdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 540 ACVSWSPDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eEEEECCCCCEEEEEECCCcEEEEE
Confidence 9999999999999999999999996
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=350.67 Aligned_cols=284 Identities=18% Similarity=0.307 Sum_probs=254.2
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
...+++.+|.+.|++++|+|++++|++|+.||+|+|||++++..+..+..|...|.+++|+|++++|++|+.|++|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-eeeEee-cCCCeeEEEEec-CCCEEEEEEc
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQP-RLGRILAAAI 699 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~-~i~~~~-~~~~i~~l~~sp-~g~~ll~~s~ 699 (834)
+.++.. +..+.+|...|.+++|+|++. +|++|+.|+.|++||++++. ....+. +...|.+++|+| ++..|++++.
T Consensus 84 ~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 84 YNTGEK-VVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp TTTCCE-EEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred CCCCcE-EEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 998764 778899999999999999976 67799999999999998874 444454 456799999999 5789999999
Q ss_pred CCeEEEEECCCCeEEEEEe-CCCCCEEEEEEcC--CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003279 700 ENYISILDVETQVCRLKLQ-GHKNQVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 775 (834)
Q Consensus 700 dg~I~iwDl~t~~~~~~l~-~h~~~I~sl~~sp--dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp 775 (834)
|+.|++||+++......+. +|...+..++|+| ++.+|++++ |++|++||++++ .++..+..|...|.+++|+|
T Consensus 162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~---~~~~~~~~h~~~v~~~~~~p 238 (304)
T 2ynn_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHP 238 (304)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECS
T ss_pred CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC---ccceeeCCCCCCEEEEEECC
Confidence 9999999998876655554 4668899999986 778999999 999999999987 78899999999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCC--EEEEEecCCcEE
Q 003279 776 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG--MVASASHDKCVK 831 (834)
Q Consensus 776 dg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~--~LaSgs~DG~I~ 831 (834)
++.+|++++.|+.|++||+.+++.+ .+..|...+.+++|+|++. +|++|+.||.+.
T Consensus 239 ~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~ 297 (304)
T 2ynn_A 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (304)
T ss_dssp SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence 9999999999999999999999887 6778899999999999886 688888777543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-39 Score=350.77 Aligned_cols=289 Identities=19% Similarity=0.334 Sum_probs=252.5
Q ss_pred CeeeeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCC-----CeEEEEeccCCCCeEEEEECCCCCEEEEE
Q 003279 539 GFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATS 612 (834)
Q Consensus 539 g~~~~~~~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~IWd~~t-----~~~~~~l~~h~~~I~~l~fspdg~~Latg 612 (834)
...+....++.+|.+.|++++|+|++ ++|++|+.|++|++|++.. +..+..+.+|...|.+++|+|++.+|++|
T Consensus 4 ~~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 83 (319)
T 3frx_A 4 NEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83 (319)
T ss_dssp CEEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ceEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEE
Confidence 34566778899999999999999965 8999999999999999863 34567889999999999999999999999
Q ss_pred eCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecC--
Q 003279 613 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR-- 690 (834)
Q Consensus 613 s~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~-- 690 (834)
+.|++|+|||+.+++ .+..+.+|...|.+++|+|++. +|++++.|+.|++||++.........+...+.++.|.|.
T Consensus 84 s~D~~v~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 84 SWDKTLRLWDVATGE-TYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEK 161 (319)
T ss_dssp ETTSEEEEEETTTTE-EEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC--
T ss_pred eCCCEEEEEECCCCC-eeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCC
Confidence 999999999999865 4788899999999999999976 677999999999999985544444446677999999985
Q ss_pred ----CCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC
Q 003279 691 ----LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 765 (834)
Q Consensus 691 ----g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~ 765 (834)
+..+++++.|+.|++||+++.+....+.+|...|.+++|+|++.+|++++ |+.|+|||+.++ +++..+.. .
T Consensus 162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~---~~~~~~~~-~ 237 (319)
T 3frx_A 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---KAMYTLSA-Q 237 (319)
T ss_dssp ----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-C
T ss_pred CCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEecC-C
Confidence 44899999999999999999999999999999999999999999999999 999999999987 66666664 4
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-e--------ccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 766 NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-L--------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 766 ~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~-l--------~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
..|.+++|+|++.+|++++. +.+++|++.....+. + ..|...|.+++|+|||++|++|+.||.|+|||
T Consensus 238 ~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 238 DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp SCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 68999999999998887765 469999998876652 2 23567899999999999999999999999996
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-39 Score=354.63 Aligned_cols=292 Identities=25% Similarity=0.432 Sum_probs=250.2
Q ss_pred eeEEEEecCCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE---EeccCCCCeEEEEECCCCCEEEEEeCCCe
Q 003279 542 FTEFQLIPASTS-KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSPSLSRLATSSADRT 617 (834)
Q Consensus 542 ~~~~~~l~gH~~-~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~---~l~~h~~~I~~l~fspdg~~Latgs~Dg~ 617 (834)
+..+..+.+|.+ .|++++|+|+|++||+|+.|++|+|||+.++.... ...+|...|.+++|+|++++|++|+.|++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 456788999998 99999999999999999999999999998876432 23689999999999999999999999999
Q ss_pred EEEEecCCCCc-eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce---eeEee-cCCCeeEEEEecCCC
Q 003279 618 VRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK-CQSGATQMRFQPRLG 692 (834)
Q Consensus 618 I~IWDl~s~~~-~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~---i~~~~-~~~~i~~l~~sp~g~ 692 (834)
|+|||+..... .+..+.+|...|.+++|+|++. +|++|+.|+.|++||++++.. +..+. +...|.+++|+|++.
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence 99999987653 4678889999999999999976 777999999999999987643 33443 456799999999999
Q ss_pred EEEEEEcCCeEEEEECCCCe--EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC------------cee
Q 003279 693 RILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------------GEC 757 (834)
Q Consensus 693 ~ll~~s~dg~I~iwDl~t~~--~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~------------~~~ 757 (834)
+|++++.|+.|++||++++. +...+.+|...|.+++|+|++.+|++++ |++|+|||...... ..+
T Consensus 164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~ 243 (345)
T 3fm0_A 164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC 243 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence 99999999999999998874 5578889999999999999999999999 99999999743221 123
Q ss_pred EEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe--------EE--EeccCCCCeEEEEEeCCC-CEEEEEe
Q 003279 758 IHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------TL--TLSAHDKLVSSLAASTVN-GMVASAS 825 (834)
Q Consensus 758 i~~~~~-~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~--------~~--~l~~h~~~V~~lafspdg-~~LaSgs 825 (834)
+..+.. |...|.+++|+|++..|++++.|+.|++|+...+. .. ...+|...|++++|+|++ .+||+|+
T Consensus 244 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s 323 (345)
T 3fm0_A 244 ICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS 323 (345)
T ss_dssp EEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred eEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence 444444 77899999999999999999999999999987642 11 235799999999999998 4999999
Q ss_pred cCCcEEEeC
Q 003279 826 HDKCVKIWK 834 (834)
Q Consensus 826 ~DG~I~IWd 834 (834)
.||.|+|||
T Consensus 324 ~Dg~v~~W~ 332 (345)
T 3fm0_A 324 DDGEVAFWK 332 (345)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEE
Confidence 999999996
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=384.02 Aligned_cols=319 Identities=21% Similarity=0.324 Sum_probs=267.2
Q ss_pred CceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEE
Q 003279 478 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 557 (834)
Q Consensus 478 ~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~s 557 (834)
....+.|++++. ..+++|+.|++|++|.... ......+.+|.+.|.+
T Consensus 149 ~v~~v~f~p~~~--------------~~l~s~s~D~~v~lwd~~~-------------------~~~~~~l~~H~~~V~~ 195 (611)
T 1nr0_A 149 AMNSVDFKPSRP--------------FRIISGSDDNTVAIFEGPP-------------------FKFKSTFGEHTKFVHS 195 (611)
T ss_dssp CEEEEEECSSSS--------------CEEEEEETTSCEEEEETTT-------------------BEEEEEECCCSSCEEE
T ss_pred CceEEEECCCCC--------------eEEEEEeCCCeEEEEECCC-------------------CeEeeeeccccCceEE
Confidence 455666766541 3589999999999995321 1345678899999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-------cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCce-
Q 003279 558 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS- 629 (834)
Q Consensus 558 l~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-------~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~- 629 (834)
++|+|||++||+|+.|++|+|||+.+++.+..+. +|.+.|.+++|+|++++|++++.|++|+|||+.+++..
T Consensus 196 v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~ 275 (611)
T 1nr0_A 196 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK 275 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred EEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee
Confidence 9999999999999999999999999999988884 79999999999999999999999999999999865421
Q ss_pred -----------------------------------------eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 003279 630 -----------------------------------------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 668 (834)
Q Consensus 630 -----------------------------------------i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~ 668 (834)
...+.+|...|.+++|+|++. +|++++.|+.|++||+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 276 TIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDIS 354 (611)
T ss_dssp EEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT
T ss_pred eecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECC
Confidence 234457999999999999977 66799999999999998
Q ss_pred CCceeeEe------------------------------------------------------------------------
Q 003279 669 NGSCAGVF------------------------------------------------------------------------ 676 (834)
Q Consensus 669 s~~~i~~~------------------------------------------------------------------------ 676 (834)
++.+...+
T Consensus 355 ~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v 434 (611)
T 1nr0_A 355 TGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 434 (611)
T ss_dssp TCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEE
T ss_pred CCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceE
Confidence 76543221
Q ss_pred -----------ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE--EEEEeCCCCCEEEEEEcCCCCEEEEEe-CC
Q 003279 677 -----------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DE 742 (834)
Q Consensus 677 -----------~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~--~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg 742 (834)
.+...+.+++|+|++.+|++++.|+.|++||+.++.. +.. .+|...|++++|+|+|++|++++ |+
T Consensus 435 ~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~ 513 (611)
T 1nr0_A 435 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSR 513 (611)
T ss_dssp EEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCC
Confidence 0123467899999999999999999999999988653 233 57999999999999999999999 99
Q ss_pred eEEEEEcCCCCCceeEEE--eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe--E-EEeccC-CCCeEEEEEeC
Q 003279 743 LVRVWSIGSGSKGECIHE--LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--T-LTLSAH-DKLVSSLAAST 816 (834)
Q Consensus 743 ~I~IwDl~s~~~~~~i~~--~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~--~-~~l~~h-~~~V~~lafsp 816 (834)
+|++||+.+.. +.+.. +..|...|.+++|+|++++|++++.|++|++||+.++. . ..+.+| ...|.+++|+|
T Consensus 514 ~v~~w~~~~~~--~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~ 591 (611)
T 1nr0_A 514 KVIPYSVANNF--ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN 591 (611)
T ss_dssp CEEEEEGGGTT--EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE
T ss_pred CEEEEEcCCCC--ceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcC
Confidence 99999998731 33332 33488999999999999999999999999999998764 2 355688 89999999999
Q ss_pred CCCEEEEEecCCcEEEeC
Q 003279 817 VNGMVASASHDKCVKIWK 834 (834)
Q Consensus 817 dg~~LaSgs~DG~I~IWd 834 (834)
++. |++++.||+|+|||
T Consensus 592 d~~-l~s~~~D~~i~lW~ 608 (611)
T 1nr0_A 592 ETT-IVSAGQDSNIKFWN 608 (611)
T ss_dssp TTE-EEEEETTSCEEEEE
T ss_pred CCE-EEEecCCCCEEEEe
Confidence 998 99999999999996
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-39 Score=359.66 Aligned_cols=282 Identities=28% Similarity=0.455 Sum_probs=251.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCC------------------CeEEEEECCCCCEEEE
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------------------WITDVRFSPSLSRLAT 611 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~------------------~I~~l~fspdg~~Lat 611 (834)
+|.+.|+|++|+|||++||+|+ ++.++||++.+++.+..+..|.. .|++++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999986 68999999999999888765542 4999999999999999
Q ss_pred EeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEec-C
Q 003279 612 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP-R 690 (834)
Q Consensus 612 gs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp-~ 690 (834)
|+.|++|+|||+.+++ .+..+.+|...|.+++|+|++. +|++++.|+.|++||++++++...+.+...+.+++|+| +
T Consensus 141 ~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 141 GAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218 (393)
T ss_dssp EETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred EcCCCeEEEEECCCCc-EEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCC
Confidence 9999999999999765 4778899999999999999977 56799999999999999999999998889999999999 8
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEE-------eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC--------
Q 003279 691 LGRILAAAIENYISILDVETQVCRLKL-------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-------- 754 (834)
Q Consensus 691 g~~ll~~s~dg~I~iwDl~t~~~~~~l-------~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~-------- 754 (834)
+.+|++++.|+.|++||++++..+..+ .+|...|.+++|+|++.+|++++ |+.|++||+++...
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 298 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298 (393)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence 899999999999999999999887776 57899999999999999999999 99999999986421
Q ss_pred -ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeC------CCCEEEEEec
Q 003279 755 -GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAST------VNGMVASASH 826 (834)
Q Consensus 755 -~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafsp------dg~~LaSgs~ 826 (834)
..+...+..|...|.+++|++++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|++ ++.+||+|+.
T Consensus 299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~ 378 (393)
T 1erj_A 299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG 378 (393)
T ss_dssp --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred CCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECC
Confidence 2456677889999999999999999999999999999999998877 6779999999999986 6789999999
Q ss_pred CCcEEEeC
Q 003279 827 DKCVKIWK 834 (834)
Q Consensus 827 DG~I~IWd 834 (834)
||+|+|||
T Consensus 379 Dg~i~iW~ 386 (393)
T 1erj_A 379 DCKARIWK 386 (393)
T ss_dssp TSEEEEEE
T ss_pred CCcEEECc
Confidence 99999996
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=340.57 Aligned_cols=288 Identities=24% Similarity=0.456 Sum_probs=258.7
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 003279 542 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 621 (834)
Q Consensus 542 ~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 621 (834)
+.....+.+|.+.|++++|+|++++||+|+.||.|+||++.+++....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcC
Q 003279 622 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 622 Dl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~d 700 (834)
|+.++. .+..+.+|...|.+++|+|++. +|++++.|+.|++||+++++++..+.. ...+.+++|+|++.++++++.|
T Consensus 93 d~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
T 4ery_A 93 DVSSGK-CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170 (312)
T ss_dssp ETTTCC-EEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ECCCCc-EEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 999866 4778889999999999999976 677999999999999999998888764 5679999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEe-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE---EEEEeC
Q 003279 701 NYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH---SCVFHP 775 (834)
Q Consensus 701 g~I~iwDl~t~~~~~~l~-~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~---svafsp 775 (834)
+.|++||+++++.+..+. .+...+.+++|+|++.+|++++ |+.|++||++++ .++..+..|...+. .....+
T Consensus 171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT---EEEEEECSSCCSSSCCCEEEECS
T ss_pred CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC---cEEEEEEecCCceEEEEEEEEeC
Confidence 999999999998877764 4667899999999999999999 999999999987 67777777665432 233346
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEe--cCCcEEEeC
Q 003279 776 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 834 (834)
Q Consensus 776 dg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs--~DG~I~IWd 834 (834)
++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++.+|++++ .|+.|+||+
T Consensus 248 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp SSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred CCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence 7889999999999999999999877 6779999999999999999999997 699999995
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-38 Score=347.78 Aligned_cols=287 Identities=18% Similarity=0.355 Sum_probs=243.9
Q ss_pred eeeEEEEecCCCCCeEEEEE-----cC-CCCEEEEEeCCCcEEEEeCCC-------CeEEEEeccCCCCeEEEEECCCCC
Q 003279 541 TFTEFQLIPASTSKVESCHF-----SP-DGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLS 607 (834)
Q Consensus 541 ~~~~~~~l~gH~~~V~sl~f-----Sp-dg~~Lasgs~Dg~I~IWd~~t-------~~~~~~l~~h~~~I~~l~fspdg~ 607 (834)
.+.....+.+|.+.|++++| ++ |+++||+|+.|++|+|||+.+ +.....+.+|...|.+++|+|++.
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 89 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC 89 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence 34567789999999999999 77 999999999999999999874 346678899999999999999999
Q ss_pred EEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEe---ecCCCeeE
Q 003279 608 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KCQSGATQ 684 (834)
Q Consensus 608 ~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~---~~~~~i~~ 684 (834)
+|++++.|++|++||+.++. .+..+.+|...|.+++|+|++. +|++++.|+.|++||+......... .+...+.+
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 167 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGT-TYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSC 167 (343)
T ss_dssp EEEEEETTSEEEEEETTSSC-EEEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred EEEEEcCCCcEEEEECCCCc-EEEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCCceeeeecccCCCceeee
Confidence 99999999999999999865 4778889999999999999977 5668999999999999844333222 24567999
Q ss_pred EEEecCC----------CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC
Q 003279 685 MRFQPRL----------GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 753 (834)
Q Consensus 685 l~~sp~g----------~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~ 753 (834)
++|+|++ .+|++++.|+.|++|| ........+.+|...|.+++|+|++++|++++ |+.|++||+....
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~ 246 (343)
T 2xzm_R 168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT 246 (343)
T ss_dssp EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred eeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 9999986 7899999999999999 45677788899999999999999999999999 9999999995542
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE---Eec-----------cCCCCeEEEEEeCCCC
Q 003279 754 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TLS-----------AHDKLVSSLAASTVNG 819 (834)
Q Consensus 754 ~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~---~l~-----------~h~~~V~~lafspdg~ 819 (834)
.....+ .+...|.+++|+|++.+++ ++.|+.|++||+.+++.. .+. +|...|.+++|+|+++
T Consensus 247 --~~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 322 (343)
T 2xzm_R 247 --YPQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK 322 (343)
T ss_dssp --SCSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC
T ss_pred --ccceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC
Confidence 222233 2456799999999998665 556888999999876533 222 6788899999999999
Q ss_pred EEEEEecCCcEEEeC
Q 003279 820 MVASASHDKCVKIWK 834 (834)
Q Consensus 820 ~LaSgs~DG~I~IWd 834 (834)
+|++|+.||.|+||+
T Consensus 323 ~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 323 KLFAGFTDGVIRTFS 337 (343)
T ss_dssp CEEEEETTSEEEEEE
T ss_pred eEEEecCCceEEEEE
Confidence 999999999999996
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=364.16 Aligned_cols=305 Identities=27% Similarity=0.445 Sum_probs=269.4
Q ss_pred cCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003279 500 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 579 (834)
Q Consensus 500 ~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IW 579 (834)
......+++++.|+.+++|.... ..+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 271 ~~d~~~l~~~~~d~~i~~w~~~~--------------------~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w 330 (577)
T 2ymu_A 271 RPDGQTIASASDDKTVKLWNRNG--------------------QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330 (577)
T ss_dssp CTTSSEEEEEETTSCEEEEETTS--------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cCCCCEEEEEeCCCEEEEEeCCC--------------------cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Confidence 33457889999999999995321 1345678999999999999999999999999999999
Q ss_pred eCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC
Q 003279 580 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 580 d~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 659 (834)
|... ..+..+.+|...|.+++|+|++++|++++.|+.|++||... ..+..+.+|...|.+++|+|++. +|++++.|
T Consensus 331 ~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~--~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~~d 406 (577)
T 2ymu_A 331 NRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQ-TIASASDD 406 (577)
T ss_dssp ETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC--CEEEEEECCSSCEEEEEECTTSS-CEEEEETT
T ss_pred eCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC--CEEEEecCCCCCeEEEEECCCCC-EEEEEeCC
Confidence 9765 55667889999999999999999999999999999999653 34778889999999999999987 56688999
Q ss_pred CcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 003279 660 SEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 738 (834)
Q Consensus 660 g~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Las 738 (834)
+.|++||.. ++.+..+. +...|.+++|+|++.+|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++
T Consensus 407 ~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las 484 (577)
T 2ymu_A 407 KTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS 484 (577)
T ss_dssp SEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEE
T ss_pred CEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 999999965 55555554 5677999999999999999999999999996 56778888999999999999999999999
Q ss_pred Ee-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCC
Q 003279 739 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV 817 (834)
Q Consensus 739 gs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspd 817 (834)
++ |+.|++||.. + +++..+..|...|++++|+|++++|++++.|+.|++||........+.+|.+.|++++|+||
T Consensus 485 ~~~d~~i~iw~~~-~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~d 560 (577)
T 2ymu_A 485 ASDDKTVKLWNRN-G---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD 560 (577)
T ss_dssp EETTSEEEEEETT-S---CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTT
T ss_pred EeCCCEEEEEcCC-C---CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCC
Confidence 99 9999999963 3 67888999999999999999999999999999999999765555588899999999999999
Q ss_pred CCEEEEEecCCcEEEeC
Q 003279 818 NGMVASASHDKCVKIWK 834 (834)
Q Consensus 818 g~~LaSgs~DG~I~IWd 834 (834)
+++|+|++.||+|+|||
T Consensus 561 g~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 561 GQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEETTSCEEEEC
T ss_pred CCEEEEEeCCCEEEEeC
Confidence 99999999999999998
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=350.35 Aligned_cols=279 Identities=15% Similarity=0.210 Sum_probs=235.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-----------CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 618 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t-----------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I 618 (834)
.|...|.+++|+|||++|++++ |+++++||... .........|...|.+++|+|++ .|++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 5667799999999999999887 77888886321 01111222466789999999985 78899999999
Q ss_pred EEEecCCCCcee---eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCC-E
Q 003279 619 RVWDTENPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG-R 693 (834)
Q Consensus 619 ~IWDl~s~~~~i---~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~-~ 693 (834)
+|||+.+++... ....+|...|++++|+|++. +|++|+.|+.|++||+++++++..+.. ...|.+++|++++. .
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 999999876422 23458999999999999976 677999999999999999999988874 67799999999875 6
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEe--CCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003279 694 ILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 769 (834)
Q Consensus 694 ll~~s~dg~I~iwDl~t~~~~~~l~--~h~~~I~sl~~spd-g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 769 (834)
|++++.|+.|++||++++++...+. .|...+.+++|+|+ +.+|++++ |+.|+|||++++ +++..+..|...|.
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~---~~~~~~~~h~~~v~ 261 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST---SCVLSSAVHSQCVT 261 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-----CCEEEECCSSCEE
T ss_pred eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC---cEEEEEcCCCCCEE
Confidence 7889999999999999998877764 35667999999985 56888888 999999999988 67888999999999
Q ss_pred EEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCC-EEEEEecCCcEEEeC
Q 003279 770 SCVFHPTF-PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 834 (834)
Q Consensus 770 svafspdg-~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~-~LaSgs~DG~I~IWd 834 (834)
+++|+|++ .+|++++.|++|+|||+.+++++.+.+|.+.|++++|+|+++ +|++|+.||+|++|+
T Consensus 262 ~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 262 GLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp EEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 99999998 578999999999999999999999999999999999999986 678999999999995
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-38 Score=342.22 Aligned_cols=289 Identities=21% Similarity=0.335 Sum_probs=237.6
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eEEEEe-cc-CCCCeEEEEECCCCCEEEEEeCCCe
Q 003279 542 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTL-EE-HTQWITDVRFSPSLSRLATSSADRT 617 (834)
Q Consensus 542 ~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~--~~~~~l-~~-h~~~I~~l~fspdg~~Latgs~Dg~ 617 (834)
+..+..+.+|.+.|++++|+++ +||+|+.|++|+|||+.++ ..+..+ .+ |...|.+++|+|++.+|++++.|++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 3457788999999999999988 9999999999999999874 455566 44 9999999999999999999999999
Q ss_pred EEEEecCCC------CceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC----ceeeEee-cCCCeeEEE
Q 003279 618 VRVWDTENP------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK-CQSGATQMR 686 (834)
Q Consensus 618 I~IWDl~s~------~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~----~~i~~~~-~~~~i~~l~ 686 (834)
|+|||+... ...+..+.+|...|.+++|+|++. +|++|+.|+.|++||++.. +++..+. +...|.+++
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 999998532 124567889999999999999976 6779999999999999532 4455554 456799999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCC--eEEEEEeCCCCCEEEEEEcCC--CCEEEEEe-CCeEEEEEcCCCCCc-----e
Q 003279 687 FQPRLGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTS--GEYLASVS-DELVRVWSIGSGSKG-----E 756 (834)
Q Consensus 687 ~sp~g~~ll~~s~dg~I~iwDl~t~--~~~~~l~~h~~~I~sl~~spd--g~~Lasgs-Dg~I~IwDl~s~~~~-----~ 756 (834)
|+|++.+|++++.|+.|++||+.++ +++..+.+|...|.+++|+|+ +.+|++++ |++|++||+..+... .
T Consensus 161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence 9999999999999999999999876 678889999999999999998 77899988 999999999754211 2
Q ss_pred eEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe--EE--EeccCCC-CeEEEEEeC--CCCEEEEEecCC
Q 003279 757 CIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--TL--TLSAHDK-LVSSLAAST--VNGMVASASHDK 828 (834)
Q Consensus 757 ~i~~~~~-~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~--~~--~l~~h~~-~V~~lafsp--dg~~LaSgs~DG 828 (834)
+...+.. |...|.+++|++++ +|++++.|+.|+|||..+++ .+ ....|.. .|.+++|+| ++.+||+|+.||
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence 3444444 78899999999765 79999999999999998874 23 2357877 899999999 688999999999
Q ss_pred cEEEeC
Q 003279 829 CVKIWK 834 (834)
Q Consensus 829 ~I~IWd 834 (834)
.|+|||
T Consensus 320 ~v~~W~ 325 (330)
T 2hes_X 320 IVNFWS 325 (330)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999996
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=353.51 Aligned_cols=281 Identities=13% Similarity=0.170 Sum_probs=237.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEeCCCCeEE----EEeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 003279 549 PASTSKVESCHFSPDGKLLATGGH------DKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTV 618 (834)
Q Consensus 549 ~gH~~~V~sl~fSpdg~~Lasgs~------Dg~I~IWd~~t~~~~----~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I 618 (834)
.+|...|++++|+|||++||+|+. |+.|++|+..++... ....+|...|++++|+|++. +++++.||+|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v 117 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV 117 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence 479999999999999999999997 778999998776543 33457889999999999975 5677899999
Q ss_pred EEEecCCCCcee---eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCC-E
Q 003279 619 RVWDTENPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG-R 693 (834)
Q Consensus 619 ~IWDl~s~~~~i---~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~-~ 693 (834)
+|||+.+++... ....+|...|++++|+|++. +|++++.|+.|++||+++++++..+.. ...|.+++|++++. .
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~ 196 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTI 196 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSC
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCce
Confidence 999998765322 23457999999999999976 667999999999999999999988874 56799999999875 7
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEe--CCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003279 694 ILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 769 (834)
Q Consensus 694 ll~~s~dg~I~iwDl~t~~~~~~l~--~h~~~I~sl~~spd-g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 769 (834)
+++++.|+.|++||++++++...+. .|...+.+++|+|+ +.+|++++ |+.|++||++++ .++..+..|...|.
T Consensus 197 ~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~---~~~~~~~~~~~~v~ 273 (357)
T 4g56_B 197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP---DSAQTSAVHSQNIT 273 (357)
T ss_dssp EEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG---GGCEEECCCSSCEE
T ss_pred eeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC---cEeEEEeccceeEE
Confidence 8899999999999999987665543 46778999999997 46788887 999999999987 67788889999999
Q ss_pred EEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeC-CCCEEEEEecCCcEEEeC
Q 003279 770 SCVFHPTF-PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK 834 (834)
Q Consensus 770 svafspdg-~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafsp-dg~~LaSgs~DG~I~IWd 834 (834)
+++|+|++ .+|++++.|++|+|||+.+++++...+|.+.|++|+|+| ++.+|++|+.||+|+|||
T Consensus 274 ~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 274 GLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp EEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 99999987 578899999999999999999998889999999999998 789999999999999996
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-37 Score=336.23 Aligned_cols=284 Identities=17% Similarity=0.249 Sum_probs=254.5
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEec
Q 003279 544 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 623 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 623 (834)
....+.+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC-----CcEEEEECCCCcee-----------eEee-cCC--CeeE
Q 003279 624 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCA-----------GVFK-CQS--GATQ 684 (834)
Q Consensus 624 ~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~lwDl~s~~~i-----------~~~~-~~~--~i~~ 684 (834)
.++.. +..+. +...|.+++|+|++. ++++++.+ +.|++||+...... ..+. +.. .+.+
T Consensus 104 ~~~~~-~~~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 104 SNGQC-VATWK-SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp TTCCE-EEEEE-CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred CCCcE-EEEee-cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 98764 55555 889999999999987 55577777 99999999866432 1222 222 7999
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCC-CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee
Q 003279 685 MRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 762 (834)
Q Consensus 685 l~~sp~g~~ll~~s~dg~I~iwDl~t-~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~ 762 (834)
++|+|++..+++++.|+.|++||+++ ...+..+..|...|.+++|+|++.+|++++ |+.|++||++++ ..+..+.
T Consensus 181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~ 257 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL---QVLKKYE 257 (369)
T ss_dssp EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEE
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC---ceeeeec
Confidence 99999999999999999999999999 788999999999999999999999999998 999999999987 5555555
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCC--------------eEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecC
Q 003279 763 CTGNKFHSCVFHPTFPSLLVIGCYE--------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 763 ~~~~~I~svafspdg~~L~sgs~dg--------------~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~D 827 (834)
+...+..++|+|++.++++++.++ .|++||+.+++.+ .+.+|...|.+++|+|++++|++++.|
T Consensus 258 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 336 (369)
T 3zwl_B 258 -TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED 336 (369)
T ss_dssp -CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred -CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCC
Confidence 678899999999999999999988 8999999998887 677899999999999999999999999
Q ss_pred CcEEEeC
Q 003279 828 KCVKIWK 834 (834)
Q Consensus 828 G~I~IWd 834 (834)
|.|+|||
T Consensus 337 g~v~iw~ 343 (369)
T 3zwl_B 337 GFIRLHH 343 (369)
T ss_dssp SEEEEEE
T ss_pred CeEEEEE
Confidence 9999996
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=355.22 Aligned_cols=303 Identities=26% Similarity=0.446 Sum_probs=269.9
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
...++++++.|+.+++|.... ..+..+.+|...|.+++|+|++++|++++.|+.|++||.
T Consensus 232 dg~~l~~~~~d~~i~~w~~~~--------------------~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~ 291 (577)
T 2ymu_A 232 DGQTIASASDDKTVKLWNRNG--------------------QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR 291 (577)
T ss_dssp TSSCEEEEETTSCEEEECTTS--------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCCEEEEEeCCCEEEEEeCCC--------------------CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC
Confidence 346789999999999995311 235677899999999999999999999999999999996
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc
Q 003279 582 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 661 (834)
Q Consensus 582 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 661 (834)
+++.+..+.+|...|.+++|+|++.+|++++.|++|++||+... .+..+.+|...|.+++|+|++. ++++++.|+.
T Consensus 292 -~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~--~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~ 367 (577)
T 2ymu_A 292 -NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--HLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKT 367 (577)
T ss_dssp -TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEECTTSS-EEEEEETTSE
T ss_pred -CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC--eeEEEeCCCCCEEEEEECCCCC-EEEEEeCCCE
Confidence 46778889999999999999999999999999999999998753 3677889999999999999977 6678999999
Q ss_pred EEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 003279 662 IRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs 740 (834)
|++||.. ++.+..+. +...|.+++|+|++.+|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++
T Consensus 368 v~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 445 (577)
T 2ymu_A 368 VKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASAS 445 (577)
T ss_dssp EEEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEc
Confidence 9999965 55665555 4677999999999999999999999999995 5677888899999999999999999999999
Q ss_pred -CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCC
Q 003279 741 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG 819 (834)
Q Consensus 741 -Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~ 819 (834)
|+.|++||+.. ..+..+..|...|.+++|+|++++|++++.|+.|++||........+.+|...|++++|+|+++
T Consensus 446 ~d~~v~~w~~~~----~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~ 521 (577)
T 2ymu_A 446 DDKTVKLWNRNG----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQ 521 (577)
T ss_dssp TTSEEEEEETTS----CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSS
T ss_pred CCCEEEEEECCC----CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCC
Confidence 99999999643 5777888999999999999999999999999999999976555558889999999999999999
Q ss_pred EEEEEecCCcEEEeC
Q 003279 820 MVASASHDKCVKIWK 834 (834)
Q Consensus 820 ~LaSgs~DG~I~IWd 834 (834)
+||+++.||.|+|||
T Consensus 522 ~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 522 TIASASDDKTVKLWN 536 (577)
T ss_dssp CEEEEETTSEEEEEC
T ss_pred EEEEEECcCEEEEEe
Confidence 999999999999997
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-37 Score=334.82 Aligned_cols=271 Identities=20% Similarity=0.291 Sum_probs=248.5
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
..++++|+.|+.|++|..... .......+.+|...|.+++|++++.++++++.|++|+|||+.
T Consensus 48 ~~~l~tgs~D~~v~vW~~~~~-----------------~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~ 110 (321)
T 3ow8_A 48 SETVVTGSLDDLVKVWKWRDE-----------------RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110 (321)
T ss_dssp -CEEEEEETTSCEEEEEEETT-----------------EEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEcCCCCEEEEECCCC-----------------CeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 468999999999999965322 123345688999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 003279 583 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 662 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 662 (834)
+++.+..+..|...|.+++|+|++++|++++.|+.|++||+.++.. ...+..|...|.+++|+|++. +|++++.|+.|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~-~~~~~~~~~~v~~~~~spdg~-~lasg~~dg~i 188 (321)
T 3ow8_A 111 NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK-EYSLDTRGKFILSIAYSPDGK-YLASGAIDGII 188 (321)
T ss_dssp TTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE-EEEEECSSSCEEEEEECTTSS-EEEEEETTSCE
T ss_pred CCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce-eEEecCCCceEEEEEECCCCC-EEEEEcCCCeE
Confidence 9999999999999999999999999999999999999999998764 667778899999999999977 67799999999
Q ss_pred EEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-
Q 003279 663 RYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 740 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs- 740 (834)
++||+++++++..+.. ...|.+++|+|++.+|++++.|+.|++||++++.....+.+|...|.+++|+|++.+|++++
T Consensus 189 ~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 268 (321)
T 3ow8_A 189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS 268 (321)
T ss_dssp EEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence 9999999999888874 56799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 741 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 741 Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
|++|+|||+.++ .++..+..|...|.+++|+|++.+|++++.|+.|+|||+.
T Consensus 269 D~~v~iwd~~~~---~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 269 DKSVKVWDVGTR---TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCcEEEEeCCCC---EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999987 8888999999999999999999999999999999999963
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-37 Score=330.16 Aligned_cols=279 Identities=18% Similarity=0.255 Sum_probs=251.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE---EEec--cCCCCeEEEEECCCCCEEEEEeCCCeEEEEec
Q 003279 549 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK---STLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDT 623 (834)
Q Consensus 549 ~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~---~~l~--~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 623 (834)
.+|.+.|++++|+|++++|++++ ||.|++||+.+++.. ..+. .|...|.+++|+|++++|++++.|+.|++||+
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~ 126 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence 48999999999999999999999 999999999876432 3333 79999999999999999999999999999999
Q ss_pred CCCCc-eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCC
Q 003279 624 ENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIEN 701 (834)
Q Consensus 624 ~s~~~-~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg 701 (834)
.++.. ....+..|...|.+++|+|++. ++++++.||.|++||+++++.+..+. +...+.+++|+|++..+++++.|+
T Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 205 (337)
T 1gxr_A 127 AAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN 205 (337)
T ss_dssp CCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCcceeeecccCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCC
Confidence 97653 3566778999999999999876 66688999999999999999888887 467799999999999999999999
Q ss_pred eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003279 702 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 780 (834)
Q Consensus 702 ~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L 780 (834)
.|++||+++++.+..+. +...+.+++|+|++.+|++++ |+.|++||+.+.. ...+..|...|.+++|+|++++|
T Consensus 206 ~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l 280 (337)
T 1gxr_A 206 TVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----KYQLHLHESCVLSLKFAYCGKWF 280 (337)
T ss_dssp EEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC----EEEECCCSSCEEEEEECTTSSEE
T ss_pred cEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC----eEEEcCCccceeEEEECCCCCEE
Confidence 99999999999888876 788999999999999999999 9999999998863 34567788999999999999999
Q ss_pred EEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 781 LVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 781 ~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++++.|+.|++||+.+++.+....|...|.+++|+|++++|++++.||.|+|||
T Consensus 281 ~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 281 VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred EEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 999999999999999999887778999999999999999999999999999996
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-37 Score=347.93 Aligned_cols=280 Identities=23% Similarity=0.440 Sum_probs=253.2
Q ss_pred CCceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeE
Q 003279 477 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 556 (834)
Q Consensus 477 ~~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~ 556 (834)
.+..++.|++++ .++++|+.|+.|++|...... ....+.+|.+.|.
T Consensus 109 ~~V~~~~~~p~~---------------~~l~s~s~Dg~i~vwd~~~~~-------------------~~~~l~~h~~~V~ 154 (410)
T 1vyh_C 109 SPVTRVIFHPVF---------------SVMVSASEDATIKVWDYETGD-------------------FERTLKGHTDSVQ 154 (410)
T ss_dssp SCEEEEEECSSS---------------SEEEEEESSSCEEEEETTTCC-------------------CCEEECCCSSCEE
T ss_pred CcEEEEEEcCCC---------------CEEEEEeCCCeEEEEECCCCc-------------------EEEEEeccCCcEE
Confidence 356677777655 689999999999999754321 2457789999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccC
Q 003279 557 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 636 (834)
Q Consensus 557 sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h 636 (834)
+++|+|++++|++|+.|++|+|||+.+++++..+.+|...|.+++|+|++.+|++|+.|++|++||+.++. ++..+.+|
T Consensus 155 ~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-~~~~~~~h 233 (410)
T 1vyh_C 155 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGH 233 (410)
T ss_dssp EEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECC
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-EEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999865 47888999
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecC--------------------CCEEE
Q 003279 637 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPR--------------------LGRIL 695 (834)
Q Consensus 637 ~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~--------------------g~~ll 695 (834)
...|.+++|++++. ++++|+.|+.|++||+.++++...+. +...|.+++|+|+ +.+|+
T Consensus 234 ~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 312 (410)
T 1vyh_C 234 REWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL 312 (410)
T ss_dssp SSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE
T ss_pred CccEEEEEECCCCC-EEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEE
Confidence 99999999999976 77799999999999999999888775 4567999999996 66899
Q ss_pred EEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEe
Q 003279 696 AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 774 (834)
Q Consensus 696 ~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafs 774 (834)
+++.|+.|++||++++.++..+.+|...|++++|+|++.+|++++ |+.|+|||+.++ .++..+..|...|.+++|+
T Consensus 313 sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~---~~~~~~~~h~~~v~~l~~~ 389 (410)
T 1vyh_C 313 SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK---RCMKTLNAHEHFVTSLDFH 389 (410)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS---CCCEEEECCSSCEEEEEEC
T ss_pred EEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceEEEEcCCCCcEEEEEEc
Confidence 999999999999999999999999999999999999999999999 999999999887 6778888999999999999
Q ss_pred CCCCEEEEEEcCCeEEEEECC
Q 003279 775 PTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 775 pdg~~L~sgs~dg~I~Iwdl~ 795 (834)
|++.+|++++.|+.|+||+++
T Consensus 390 ~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 390 KTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SSSSCEEEEETTSEEEEEC--
T ss_pred CCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999999999863
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-37 Score=343.19 Aligned_cols=309 Identities=13% Similarity=0.172 Sum_probs=265.7
Q ss_pred eEEeccCCCCeEEeec----CCCCCCCcccccccccCCCeeeeEEEE----------ecCCCCCeEEEEEcCCCCEEEEE
Q 003279 505 FVDDGSLDDNVESFLS----PDDADPRDRVGRSAEVGKGFTFTEFQL----------IPASTSKVESCHFSPDGKLLATG 570 (834)
Q Consensus 505 ~l~~Gs~D~~v~~~~s----~~~~~~~~~~~~~~~~~~g~~~~~~~~----------l~gH~~~V~sl~fSpdg~~Lasg 570 (834)
++++|+.|+.|++|.. ...... ..+..... ..+|.+.|++++|+|++++|++|
T Consensus 60 ~l~~~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 126 (425)
T 1r5m_A 60 ILAYGEKNSVARLARIVETDQEGKKY-------------WKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTG 126 (425)
T ss_dssp EEEEEETBTEEEEEEEEEC------C-------------EEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEE
T ss_pred EEEEecCCceEEEEEEecccCCcccc-------------ccccccccccccccccccccCCCCceEEEEEcCCCCEEEEE
Confidence 8999999999999976 322100 00111111 22378899999999999999999
Q ss_pred eCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCC-----------
Q 003279 571 GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT----------- 639 (834)
Q Consensus 571 s~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~----------- 639 (834)
+.||.|+||| .+++.+..+..|...|.+++|+|++++|++++.|+.|++||+.++.. +..+..+...
T Consensus 127 ~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 204 (425)
T 1r5m_A 127 VENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV-MQHFELKETGGSSINAENHSG 204 (425)
T ss_dssp ETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE-EEEECCC--------------
T ss_pred eCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE-EEEeeccccCccceeeccccC
Confidence 9999999999 77888899999999999999999999999999999999999987653 6666666666
Q ss_pred ----eEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 640 ----VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 714 (834)
Q Consensus 640 ----V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~ 714 (834)
|.+++|++++ .+++++.|+.|++||+++++.+..+. +...+.+++|+|++.+|++++.|+.|++||+++++.+
T Consensus 205 ~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 282 (425)
T 1r5m_A 205 DGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ 282 (425)
T ss_dssp -CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCS
T ss_pred CcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccc
Confidence 9999999974 46688899999999999998887775 4677999999999999999999999999999999989
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003279 715 LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 793 (834)
Q Consensus 715 ~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwd 793 (834)
..+..|...|.+++|+|++ +|++++ |+.|++||+.++ ..+..+..+...|.+++|+|++.+|++++.|+.|++||
T Consensus 283 ~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~ 358 (425)
T 1r5m_A 283 NCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN---TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD 358 (425)
T ss_dssp EEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT---EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC---cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEE
Confidence 9999999999999999999 888877 999999999887 78888888999999999999999999999999999999
Q ss_pred CCCCe--------------------EE-EeccCCC--CeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 794 MTENK--------------------TL-TLSAHDK--LVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 794 l~~~~--------------------~~-~l~~h~~--~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+.+++ .+ .+..|.. .|.+++|+|++++|++++.||.|+|||
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 359 LKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVA 422 (425)
T ss_dssp CHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEE
T ss_pred CCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEe
Confidence 98877 55 6777866 999999999999999999999999996
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=328.34 Aligned_cols=287 Identities=19% Similarity=0.337 Sum_probs=247.1
Q ss_pred eeeEEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCCC-----eEEEEeccCCCCeEEEEECCCCCEEEEEeC
Q 003279 541 TFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQWITDVRFSPSLSRLATSSA 614 (834)
Q Consensus 541 ~~~~~~~l~gH~~~V~sl~fSpd-g~~Lasgs~Dg~I~IWd~~t~-----~~~~~l~~h~~~I~~l~fspdg~~Latgs~ 614 (834)
.+....+|+||++.|++|+|+|+ +++||||+.|++|+|||+.+. .+...+.+|...|.+++|+|++++|++++.
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~ 106 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 106 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence 44556789999999999999997 689999999999999998754 356788999999999999999999999999
Q ss_pred CCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee--cCCCeeEEEEecCC-
Q 003279 615 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRL- 691 (834)
Q Consensus 615 Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~--~~~~i~~l~~sp~g- 691 (834)
|+.|++|+...... ......+...+..+.+++++. +|++++.|+.+++||+.......... +...+.+++|++++
T Consensus 107 d~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 184 (340)
T 4aow_A 107 DGTLRLWDLTTGTT-TRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 184 (340)
T ss_dssp TSEEEEEETTTTEE-EEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS
T ss_pred cccceEEeecccce-eeeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC
Confidence 99999999997554 566677888899999999876 56689999999999998765443322 35678899998764
Q ss_pred -CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003279 692 -GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 769 (834)
Q Consensus 692 -~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 769 (834)
..+++++.|+.|++||+++++.+..+.+|...|++++|+|++++|++++ |+.|++||+++. ..+..+.. ...+.
T Consensus 185 ~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~---~~~~~~~~-~~~v~ 260 (340)
T 4aow_A 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG---KHLYTLDG-GDIIN 260 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-SSCEE
T ss_pred CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC---ceeeeecC-CceEE
Confidence 5678889999999999999999999999999999999999999999999 999999999987 66666654 46799
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeEE----------EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 770 SCVFHPTFPSLLVIGCYETLELWNMTENKTL----------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 770 svafspdg~~L~sgs~dg~I~Iwdl~~~~~~----------~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+++|+|++. +++++.|+.|++||++++..+ ....|...|++++|+|++++||+|+.||.|+|||
T Consensus 261 ~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 261 ALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 999999876 566778999999999987655 2346889999999999999999999999999997
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=353.31 Aligned_cols=311 Identities=16% Similarity=0.225 Sum_probs=267.6
Q ss_pred ceEEec----------cCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 003279 504 RFVDDG----------SLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 573 (834)
Q Consensus 504 ~~l~~G----------s~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~D 573 (834)
.++++| +.|+.|++|........ ..+.. ..|...|++++|+|++++|++|+.|
T Consensus 26 ~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~----------------~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d 88 (416)
T 2pm9_A 26 PLLVSGTVSGTVDANFSTDSSLELWSLLAADSE----------------KPIAS-LQVDSKFNDLDWSHNNKIIAGALDN 88 (416)
T ss_dssp CEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC----------------SCSCC-CCCSSCEEEEEECSSSSCEEEEESS
T ss_pred CEEEEEecCcccccccCCCCeEEEEEccCCCCC----------------cEEEE-EecCCceEEEEECCCCCeEEEEccC
Confidence 377777 88999999966443110 01112 2588899999999999999999999
Q ss_pred CcEEEEeCCC----CeEEEEeccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCCC------ce--eeeeccCCCCe
Q 003279 574 KKAVLWCTES----FTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD------YS--LRTFTGHSTTV 640 (834)
Q Consensus 574 g~I~IWd~~t----~~~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~s~~------~~--i~~~~~h~~~V 640 (834)
|.|+|||+.+ .+.+..+.+|...|++++|+|+ +.+|++++.|+.|++||+.+.. .. ...+..|...|
T Consensus 89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (416)
T 2pm9_A 89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168 (416)
T ss_dssp SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence 9999999987 4588889999999999999998 8999999999999999999765 22 22346799999
Q ss_pred EEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-------CCCeeEEEEecCC-CEEEEEEcCC---eEEEEECC
Q 003279 641 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRL-GRILAAAIEN---YISILDVE 709 (834)
Q Consensus 641 ~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-------~~~i~~l~~sp~g-~~ll~~s~dg---~I~iwDl~ 709 (834)
.+++|+|++..+|++++.|+.|++||+++++.+..+.. ...+.+++|+|++ ..+++++.++ .|++||++
T Consensus 169 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~ 248 (416)
T 2pm9_A 169 ISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR 248 (416)
T ss_dssp CEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETT
T ss_pred eEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCC
Confidence 99999999777899999999999999999998888876 4679999999997 5888888888 99999999
Q ss_pred CC-eEEEEEe-CCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEE
Q 003279 710 TQ-VCRLKLQ-GHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIG 784 (834)
Q Consensus 710 t~-~~~~~l~-~h~~~I~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg-~~L~sgs 784 (834)
++ .++..+. +|...|.+++|+| ++.+|++++ |+.|++||++++ +.+..+..|...|.+++|+|++ .+|++++
T Consensus 249 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~ 325 (416)
T 2pm9_A 249 NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA---EQLSQFPARGNWCFKTKFAPEAPDLFACAS 325 (416)
T ss_dssp STTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC---CEEEEEECSSSCCCCEEECTTCTTEEEECC
T ss_pred CCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC---ccceeecCCCCceEEEEECCCCCCEEEEEe
Confidence 86 6677777 8999999999999 899999998 999999999987 7788888999999999999999 8999999
Q ss_pred cCCeEEEEECCCCeEEE-e-----------------------------------ccCCCCeEEEEEeCCCCEEEEEecCC
Q 003279 785 CYETLELWNMTENKTLT-L-----------------------------------SAHDKLVSSLAASTVNGMVASASHDK 828 (834)
Q Consensus 785 ~dg~I~Iwdl~~~~~~~-l-----------------------------------~~h~~~V~~lafspdg~~LaSgs~DG 828 (834)
.|+.|++||+.+..... . ..|...+.+++|+|+|++|++++.||
T Consensus 326 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~ 405 (416)
T 2pm9_A 326 FDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGK 405 (416)
T ss_dssp SSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSS
T ss_pred cCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCC
Confidence 99999999998765321 0 01667888999999999999999999
Q ss_pred cEEEeC
Q 003279 829 CVKIWK 834 (834)
Q Consensus 829 ~I~IWd 834 (834)
.|+|||
T Consensus 406 ~v~~w~ 411 (416)
T 2pm9_A 406 GVSITN 411 (416)
T ss_dssp CBCCBC
T ss_pred eEEEEE
Confidence 999997
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-37 Score=339.85 Aligned_cols=287 Identities=14% Similarity=0.152 Sum_probs=255.6
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe------EEEEeccCCCCeEEEEECCC----C---CE
Q 003279 542 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPS----L---SR 608 (834)
Q Consensus 542 ~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~------~~~~l~~h~~~I~~l~fspd----g---~~ 608 (834)
......+.+|.+.|++|+|+| ++|++|+.||.|+|||+.+++ .+..+.+|...|++++|+|+ + .+
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 345678899999999999998 799999999999999999887 78888899999999999999 9 99
Q ss_pred EEEEeCCCeEEEEecCCCCc----eeeeeccC-----CCCeEEEEEc----cCCCcEEEEEeCCCcEEEEECCC------
Q 003279 609 LATSSADRTVRVWDTENPDY----SLRTFTGH-----STTVMSLDFH----PSKEDLLCSCDNNSEIRYWSINN------ 669 (834)
Q Consensus 609 Latgs~Dg~I~IWDl~s~~~----~i~~~~~h-----~~~V~sl~fs----pdg~~llasgs~Dg~I~lwDl~s------ 669 (834)
|++++.|+.|++||+.+... .+..+..| ...|.+++|+ |++..+|++++.||.|++||+++
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 99999999999999987653 15667778 5899999999 98875377999999999999998
Q ss_pred Cceee-----Eee--------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC---C---CCCEEEEEEc
Q 003279 670 GSCAG-----VFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---H---KNQVHSVCWN 730 (834)
Q Consensus 670 ~~~i~-----~~~--------~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~---h---~~~I~sl~~s 730 (834)
++.+. .+. +...+.+++|+|++ .+++++.|+.|++||+++++.+..+.. | ...|.+++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~ 242 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 242 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence 66655 554 36779999999999 999999999999999999999999998 8 9999999999
Q ss_pred CCCCEEEEEe-C---CeEEEEEcCCCCCceeEEEeec-------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003279 731 TSGEYLASVS-D---ELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCYETLELWN 793 (834)
Q Consensus 731 pdg~~Lasgs-D---g~I~IwDl~s~~~~~~i~~~~~-------------~~~~I~svafspdg~~L~sgs~dg~I~Iwd 793 (834)
|++.+|++++ | +.|++||++++ ..+..+.. |...|.+++|+|++.+|++++.|+.|++||
T Consensus 243 ~~~~~l~~~~~d~~~g~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 243 PQGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEecCCCCceEEEEECCCC---cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 9999999998 8 89999999987 67777877 899999999999999999999999999999
Q ss_pred CCCCeEE-Eec------cC---------------CCCeEEEEEeCCC----------CEEEEEecCCcEEEeC
Q 003279 794 MTENKTL-TLS------AH---------------DKLVSSLAASTVN----------GMVASASHDKCVKIWK 834 (834)
Q Consensus 794 l~~~~~~-~l~------~h---------------~~~V~~lafspdg----------~~LaSgs~DG~I~IWd 834 (834)
+.+++.+ .+. .| ...|.+++|+|++ .+|++++.||.|+|||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 9999877 555 67 8999999999998 7999999999999996
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-36 Score=324.07 Aligned_cols=271 Identities=19% Similarity=0.302 Sum_probs=240.8
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
.++++|+.|+.|++|..... ..+..+.+|...|.+++|+|++++|++|+.|++|+|||+.+
T Consensus 26 ~~l~s~~~dg~v~lWd~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~ 86 (304)
T 2ynn_A 26 PWVLTTLYSGRVELWNYETQ-------------------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (304)
T ss_dssp SEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred CEEEEEcCCCcEEEEECCCC-------------------ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 78999999999999965432 24567789999999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 663 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 663 (834)
++.+..+.+|.+.|++++|+|++.+|++|+.|++|++||+.++......+.+|...|.+++|+|++..+|++|+.|+.|+
T Consensus 87 ~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~ 166 (304)
T 2ynn_A 87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166 (304)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEE
T ss_pred CcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEE
Confidence 99999999999999999999999999999999999999999876667788999999999999997667888999999999
Q ss_pred EEECCCCceeeEeec--CCCeeEEEEec--CCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 003279 664 YWSINNGSCAGVFKC--QSGATQMRFQP--RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 664 lwDl~s~~~i~~~~~--~~~i~~l~~sp--~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasg 739 (834)
+||++.+.....+.. ...+..+.|+| ++.+|++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|+++
T Consensus 167 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 246 (304)
T 2ynn_A 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG 246 (304)
T ss_dssp EEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEE
T ss_pred EEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEE
Confidence 999988776665543 45688899987 67899999999999999999999999999999999999999999999999
Q ss_pred e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCC
Q 003279 740 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTE 796 (834)
Q Consensus 740 s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~-L~sgs~dg~I~Iwdl~~ 796 (834)
+ |++|++||+.++ +++..+..+...+.+++|+|++.. +++++.++.+.+|++.+
T Consensus 247 s~Dg~i~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 247 SEDGTLKIWNSSTY---KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (304)
T ss_dssp ETTSCEEEEETTTC---CEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred cCCCeEEEEECCCC---ceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence 9 999999999987 788888888999999999998853 34445566688888765
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-37 Score=337.61 Aligned_cols=244 Identities=17% Similarity=0.282 Sum_probs=212.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE----EeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS----TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 625 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~----~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s 625 (834)
.|...|.+++|+|++ .|++|+.||+|+|||+.+++.+. .+.+|.+.|++|+|+|++++|++|+.|++|+|||+.+
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 466789999999986 78899999999999999886543 3458999999999999999999999999999999998
Q ss_pred CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec---CCCeeEEEEecC-CCEEEEEEcCC
Q 003279 626 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPR-LGRILAAAIEN 701 (834)
Q Consensus 626 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~---~~~i~~l~~sp~-g~~ll~~s~dg 701 (834)
+. .+..+.+|...|.+++|++++..+|++|+.|+.|++||++++++...+.. ...+.+++|+|+ +.+|++++.|+
T Consensus 159 ~~-~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 159 QV-VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp TE-EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred Cc-EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence 65 58889999999999999999988999999999999999999998877653 345889999995 45778889999
Q ss_pred eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003279 702 YISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 779 (834)
Q Consensus 702 ~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~ 779 (834)
.|++||+++++++..+.+|...|++++|+|++ .+|++++ |++|+|||+.++ + +..+.+|...|.+++|+|++..
T Consensus 238 ~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~---~-~~~~~~H~~~V~~v~~sp~~~~ 313 (344)
T 4gqb_B 238 TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS---E-LFRSQAHRDFVRDATWSPLNHS 313 (344)
T ss_dssp EEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC---E-EEEECCCSSCEEEEEECSSSTT
T ss_pred cEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---c-EEEEcCCCCCEEEEEEeCCCCe
Confidence 99999999999999999999999999999998 5788888 999999999886 3 3456789999999999999875
Q ss_pred -EEEEEcCCeEEEEECCCCeE
Q 003279 780 -LLVIGCYETLELWNMTENKT 799 (834)
Q Consensus 780 -L~sgs~dg~I~Iwdl~~~~~ 799 (834)
|++++.|++|++|++.+...
T Consensus 314 llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 314 LLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEEEETTSCEEEEECCC---
T ss_pred EEEEEcCCCeEEEEECCCCCC
Confidence 56889999999999987543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=332.18 Aligned_cols=282 Identities=15% Similarity=0.191 Sum_probs=248.0
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC
Q 003279 548 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 625 (834)
Q Consensus 548 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s 625 (834)
+..|.++|++++|+|++++||+|+.|+.|+|||+.+++ .+..+.+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 45699999999999999999999999999999999987 8888999999999999999999999999999999999987
Q ss_pred CCce-eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce---eeEee--cCCCeeEEEEecCCCEEEEEEc
Q 003279 626 PDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK--CQSGATQMRFQPRLGRILAAAI 699 (834)
Q Consensus 626 ~~~~-i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~---i~~~~--~~~~i~~l~~sp~g~~ll~~s~ 699 (834)
+... ...+..|...|.+++|+|++. +|++++.|+.|++||++.+.. ...+. +...+.+++|+|++.+|++++.
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 6532 334467899999999999976 677889999999999998763 22322 3567999999999999999999
Q ss_pred CCeEEEEEC------------------CCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEE
Q 003279 700 ENYISILDV------------------ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 760 (834)
Q Consensus 700 dg~I~iwDl------------------~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~ 760 (834)
|+.|++||+ ..+..+..+..|...|.+++|+|++.+|++++ |+.|++||++++ .++..
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~ 239 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---MAVAT 239 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT---TEEEE
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC---ceeEE
Confidence 999999995 46788889989999999999999999999999 999999999987 67888
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC--CeE---------------------------------------
Q 003279 761 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE--NKT--------------------------------------- 799 (834)
Q Consensus 761 ~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~--~~~--------------------------------------- 799 (834)
+..+...|.+++|+|++.+|+++ .|+.|++|++.+ ++.
T Consensus 240 ~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (372)
T 1k8k_C 240 LASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG 318 (372)
T ss_dssp EECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------
T ss_pred EccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccc
Confidence 88899999999999999877766 999999999987 431
Q ss_pred EEe-ccCCCCeEEEEEe-CCC---CEEEEEecCCcEEEeC
Q 003279 800 LTL-SAHDKLVSSLAAS-TVN---GMVASASHDKCVKIWK 834 (834)
Q Consensus 800 ~~l-~~h~~~V~~lafs-pdg---~~LaSgs~DG~I~IWd 834 (834)
..+ .+|...|++++|+ ++| .+|++|+.||.|+|||
T Consensus 319 ~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 319 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred ccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 222 3899999999966 666 8999999999999996
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=358.63 Aligned_cols=285 Identities=21% Similarity=0.356 Sum_probs=244.8
Q ss_pred eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCC-----CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 003279 543 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 616 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~IWd~~t-----~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 616 (834)
.....+.+|++.|++|+|++++ ++|++|+.|++|+|||+.+ +.....+.+|...|.+++|+|++++|++|+.|+
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 4456789999999999999864 7999999999999999875 345678899999999999999999999999999
Q ss_pred eEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee----cCCCeeEEEEecCC-
Q 003279 617 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMRFQPRL- 691 (834)
Q Consensus 617 ~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~----~~~~i~~l~~sp~g- 691 (834)
+|+|||+.++. .+..+.+|...|.+++|+|++. +|++|+.|++|++||+.......... +...|.+++|+|++
T Consensus 453 ~v~vwd~~~~~-~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 530 (694)
T 3dm0_A 453 ELRLWDLAAGV-STRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL 530 (694)
T ss_dssp EEEEEETTTTE-EEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred cEEEEECCCCc-ceeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence 99999999765 4778889999999999999977 56699999999999987554433322 34569999999986
Q ss_pred -CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003279 692 -GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 769 (834)
Q Consensus 692 -~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 769 (834)
..+++++.|+.|++||++++++...+.+|...|++++|+|++.+|++++ |+.|+|||+.++ .++..+.. ...|.
T Consensus 531 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---~~~~~~~~-~~~v~ 606 (694)
T 3dm0_A 531 QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---KKLYSLEA-NSVIH 606 (694)
T ss_dssp SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---EEEECCBC-SSCEE
T ss_pred cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---ceEEEecC-CCcEE
Confidence 5799999999999999999999999999999999999999999999999 999999999987 56655543 56799
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-eccC-------------------CCCeEEEEEeCCCCEEEEEecCCc
Q 003279 770 SCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LSAH-------------------DKLVSSLAASTVNGMVASASHDKC 829 (834)
Q Consensus 770 svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~-l~~h-------------------~~~V~~lafspdg~~LaSgs~DG~ 829 (834)
+++|+|++.+|+++ .++.|+|||+.+++.+. +..+ ...+++++|+|+|++|++|+.||.
T Consensus 607 ~~~~sp~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~ 685 (694)
T 3dm0_A 607 ALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV 685 (694)
T ss_dssp EEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEcCCCcEEEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence 99999999866655 56679999999988762 2211 123789999999999999999999
Q ss_pred EEEeC
Q 003279 830 VKIWK 834 (834)
Q Consensus 830 I~IWd 834 (834)
|+|||
T Consensus 686 i~iW~ 690 (694)
T 3dm0_A 686 IRVWG 690 (694)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-36 Score=336.41 Aligned_cols=310 Identities=15% Similarity=0.226 Sum_probs=258.4
Q ss_pred cCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003279 500 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 579 (834)
Q Consensus 500 ~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IW 579 (834)
.....++++|+.|+.+++|....... ...+..| ..+....|++++++||+|+.||.|+||
T Consensus 65 s~~g~~l~~~~~d~~v~i~d~~~~~~-------------------~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iw 124 (420)
T 3vl1_A 65 EKVGSHLYKARLDGHDFLFNTIIRDG-------------------SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVL 124 (420)
T ss_dssp EEEETTEEEEEETTEEEEEECCSEET-------------------TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEE
T ss_pred eecCCeEEEEEcCCcEEEEEecccce-------------------eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEE
Confidence 33447789999999999996543311 1122344 335556789999999999999999999
Q ss_pred eCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC
Q 003279 580 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 580 d~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 659 (834)
|+.+++....+.+|...|++++|+|++++|++++.|+.|++||+.++.. +..+.+|...|.+++|+|++. +|++++.|
T Consensus 125 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d 202 (420)
T 3vl1_A 125 DSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-PRTLIGHRATVTDIAIIDRGR-NVLSASLD 202 (420)
T ss_dssp CTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-CEEEECCSSCEEEEEEETTTT-EEEEEETT
T ss_pred eCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-ceEEcCCCCcEEEEEEcCCCC-EEEEEcCC
Confidence 9999999998899999999999999999999999999999999998664 677889999999999999976 66699999
Q ss_pred CcEEEEECCCCceeeEeec----CCCee---------------------EEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 660 SEIRYWSINNGSCAGVFKC----QSGAT---------------------QMRFQPRLGRILAAAIENYISILDVETQVCR 714 (834)
Q Consensus 660 g~I~lwDl~s~~~i~~~~~----~~~i~---------------------~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~ 714 (834)
+.|++||+++++.+..+.. ...+. +++|+|++.+|++++.||.|++||+++++.+
T Consensus 203 ~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 282 (420)
T 3vl1_A 203 GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT 282 (420)
T ss_dssp SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE
T ss_pred CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 9999999999998888763 23344 4455788899999999999999999999877
Q ss_pred EEEe-CCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003279 715 LKLQ-GHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLE 790 (834)
Q Consensus 715 ~~l~-~h~~~I~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-~~~~I~svafspdg~~L~sgs~dg~I~ 790 (834)
..+. .|...|.+++|+|++. +|++++ |+.|++||++++. ..+..+.. +...+.++.+ +++.+|++++.|+.|+
T Consensus 283 ~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~ 359 (420)
T 3vl1_A 283 IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE--CPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIK 359 (420)
T ss_dssp EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEE
T ss_pred EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc--CchhhhhccCCCCceEEEe-CCCCEEEEecCCccEE
Confidence 7765 4888999999999998 999988 9999999999874 23555555 5667777755 5778999999999999
Q ss_pred EEECCCC----------eEEEeccCCCCeEEEEEeCCCC---EEEEEecCCcEEEeC
Q 003279 791 LWNMTEN----------KTLTLSAHDKLVSSLAASTVNG---MVASASHDKCVKIWK 834 (834)
Q Consensus 791 Iwdl~~~----------~~~~l~~h~~~V~~lafspdg~---~LaSgs~DG~I~IWd 834 (834)
+||+... ....+..|...|.+++|+|++. .|++++.+|.+.+|+
T Consensus 360 iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 360 LDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp EEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred EEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence 9998762 2335668899999999999999 788888999999995
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-35 Score=322.12 Aligned_cols=277 Identities=23% Similarity=0.371 Sum_probs=244.4
Q ss_pred CCceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeE
Q 003279 477 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 556 (834)
Q Consensus 477 ~~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~ 556 (834)
.....+.|++++ .++++|+.|+.|++|..... ..+..+..|...|.
T Consensus 56 ~~v~~~~~s~d~---------------~~l~s~s~Dg~v~iWd~~~~-------------------~~~~~~~~~~~~v~ 101 (340)
T 1got_B 56 AKIYAMHWGTDS---------------RLLLSASQDGKLIIWDSYTT-------------------NKVHAIPLRSSWVM 101 (340)
T ss_dssp SCEEEEEECTTS---------------SEEEEEETTTEEEEEETTTC-------------------CEEEEEECSSSCEE
T ss_pred CceEEEEECCCC---------------CEEEEEeCCCcEEEEECCCC-------------------CcceEeecCCccEE
Confidence 355666776654 68999999999999965332 23456778999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCC----eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeee
Q 003279 557 SCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 557 sl~fSpdg~~Lasgs~Dg~I~IWd~~t~----~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~ 632 (834)
+++|+|++++|++|+.|+.|++||+.+. +....+.+|.+.|.++.|++++ .|++++.|++|++||+.++. .+..
T Consensus 102 ~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~-~~~~ 179 (340)
T 1got_B 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQ-QTTT 179 (340)
T ss_dssp EEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTE-EEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCc-EEEE
Confidence 9999999999999999999999999865 4567788999999999999876 48999999999999999865 4778
Q ss_pred eccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003279 633 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ 711 (834)
Q Consensus 633 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~ 711 (834)
+.+|...|.+++|+|++. ++++|+.|+.|++||++++.++..+.. ...|.+++|+|++.+|++++.|+.|++||++++
T Consensus 180 ~~~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~ 258 (340)
T 1got_B 180 FTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258 (340)
T ss_dssp ECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred EcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence 889999999999999976 777999999999999999998888874 567999999999999999999999999999999
Q ss_pred eEEEEEeC--CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 003279 712 VCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET 788 (834)
Q Consensus 712 ~~~~~l~~--h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~ 788 (834)
..+..+.. +...|.+++|+|++.+|++++ |+.|++||+.++ ..+..+.+|...|.+++|+|++.+|++++.|+.
T Consensus 259 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~ 335 (340)
T 1got_B 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335 (340)
T ss_dssp EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred cEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC---cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCcc
Confidence 88777753 334799999999999999999 999999999887 677888999999999999999999999999999
Q ss_pred EEEEE
Q 003279 789 LELWN 793 (834)
Q Consensus 789 I~Iwd 793 (834)
|+|||
T Consensus 336 i~iWd 340 (340)
T 1got_B 336 LKIWN 340 (340)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99997
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-35 Score=318.82 Aligned_cols=275 Identities=17% Similarity=0.270 Sum_probs=240.7
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
..++++|+.|+.|++|...... ......+..+.+|...|.+++|+|++++|++|+.|++|+|||+.
T Consensus 30 ~~~l~s~s~D~~v~~W~~~~~~--------------~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~ 95 (319)
T 3frx_A 30 PNLLLSASRDKTLISWKLTGDD--------------QKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA 95 (319)
T ss_dssp TTEEEEEETTSEEEEEEEEEET--------------TEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccEEEEecCCccEEEecCCCCC--------------ccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 3789999999999999653221 11224567889999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCC-----CcEEEEEe
Q 003279 583 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-----EDLLCSCD 657 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg-----~~llasgs 657 (834)
+++.+..+.+|...|.+++|+|++.+|++|+.|++|++||+.. ..+..+.+|...|.+++|.|.. ..++++++
T Consensus 96 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~ 173 (319)
T 3frx_A 96 TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173 (319)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECCC------CCEEEEEE
T ss_pred CCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEe
Confidence 9999999999999999999999999999999999999999974 3477888999999999999863 33788999
Q ss_pred CCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEE
Q 003279 658 NNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL 736 (834)
Q Consensus 658 ~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~L 736 (834)
.|+.|++||+++.+....+. +...|.+++|+|++.+|++++.|+.|++||+++++++..+.. ...|.+++|+|++.+|
T Consensus 174 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l 252 (319)
T 3frx_A 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWL 252 (319)
T ss_dssp TTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEE
T ss_pred CCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEE
Confidence 99999999999988877765 467799999999999999999999999999999999998885 4689999999999999
Q ss_pred EEEeCCeEEEEEcCCCCCceeEEEee--------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003279 737 ASVSDELVRVWSIGSGSKGECIHELS--------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 797 (834)
Q Consensus 737 asgsDg~I~IwDl~s~~~~~~i~~~~--------~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~ 797 (834)
+++.++.+++|++... ..+..+. .+...+.+++|+|+|++|++++.|+.|+|||+.++
T Consensus 253 a~~~~~~i~v~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 253 AAATATGIKVFSLDPQ---YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEETTEEEEEEETTE---EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEcCCCcEEEEeCcC---eeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 9999888999999875 4444433 24567899999999999999999999999998654
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-35 Score=312.74 Aligned_cols=280 Identities=15% Similarity=0.235 Sum_probs=249.0
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 003279 541 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 620 (834)
Q Consensus 541 ~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 620 (834)
.+.....+.+|.+.|++++| +++++|++|+.||.|+|||+.+++....+..|...|.+++|+|++.+|++++.|+.|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 34567889999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCC--ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEec-CCCEEEE
Q 003279 621 WDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQP-RLGRILA 696 (834)
Q Consensus 621 WDl~s~~--~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp-~g~~ll~ 696 (834)
|++.... ..+..+.+|...|.+++|. ..++++++.|+.|++|| .++.+..+. +...+.++.|.+ ++..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EEeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 9997643 3467788899999999994 33788999999999999 556666555 467799999998 8999999
Q ss_pred EEcCCeEEEEECCCCeEEEEEeC-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEe
Q 003279 697 AAIENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 774 (834)
Q Consensus 697 ~s~dg~I~iwDl~t~~~~~~l~~-h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafs 774 (834)
++.|+.|++|| .......+.. |...|.+++|+|++. +++++ |+.|++||++++ +.+..+..|...|.+++|+
T Consensus 161 ~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~ 234 (313)
T 3odt_A 161 ASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG---DVLRTYEGHESFVYCIKLL 234 (313)
T ss_dssp EETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEEC
T ss_pred EECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch---hhhhhhhcCCceEEEEEEe
Confidence 99999999999 5566777777 899999999999999 66666 999999999987 6788888999999999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 775 PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 775 pdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|++ .|++++.|+.|++||+.+++.+ .+..|...|.+++|+|+++ +++++.||.|+|||
T Consensus 235 ~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 235 PNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp TTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred cCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence 999 5999999999999999999877 6778999999999999998 56789999999996
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=328.48 Aligned_cols=285 Identities=16% Similarity=0.226 Sum_probs=237.3
Q ss_pred eeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeEEEEec--cCCCCeEEEEECC-CCCEEEEEeCCCe
Q 003279 542 FTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSP-SLSRLATSSADRT 617 (834)
Q Consensus 542 ~~~~~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~IWd~~t~~~~~~l~--~h~~~I~~l~fsp-dg~~Latgs~Dg~ 617 (834)
+..+..+.+|.+.|++++|+|++ ++||+|+.||.|+|||+.+++....+. +|...|.+++|+| ++.+|++++.|+.
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 45567889999999999999999 999999999999999999888777765 6999999999999 7899999999999
Q ss_pred EEEEecCCCCceeeeecc---CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCC-
Q 003279 618 VRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG- 692 (834)
Q Consensus 618 I~IWDl~s~~~~i~~~~~---h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~- 692 (834)
|++||+.+. .+..+.. |...|.+++|+|++. +|++++.|+.|++||++ ++.+..+. +...|.+++|+|++.
T Consensus 143 i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 143 TTLRDFSGS--VIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDW 218 (383)
T ss_dssp EEEEETTSC--EEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTT
T ss_pred EEEEECCCC--ceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCC
Confidence 999999863 3444443 448899999999976 67799999999999995 56666665 567899999999998
Q ss_pred EEEEEEcCCeEEEEECCC----CeEEEEEeCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCCCceeEEEee----
Q 003279 693 RILAAAIENYISILDVET----QVCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELS---- 762 (834)
Q Consensus 693 ~ll~~s~dg~I~iwDl~t----~~~~~~l~~h~~~I~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~---- 762 (834)
.+++++.|+.|++||+++ +.++..+ +|...|.+++|+| ++.+|++++ |+.|++||++++.....+....
T Consensus 219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (383)
T 3ei3_B 219 LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF 297 (383)
T ss_dssp EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence 899999999999999998 6677666 5999999999999 999999999 9999999999875433222111
Q ss_pred cCC----------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-Eecc--CCCCeEEEEEeCCCCEEEEEecCCc
Q 003279 763 CTG----------NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA--HDKLVSSLAASTVNGMVASASHDKC 829 (834)
Q Consensus 763 ~~~----------~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~--h~~~V~~lafspdg~~LaSgs~DG~ 829 (834)
.+. ..+..++|+|++.+ +++.|+.|++||+.+++.+ .+.. |...+.+++|+|++++|++|+ ||.
T Consensus 298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~ 374 (383)
T 3ei3_B 298 QHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFN 374 (383)
T ss_dssp TTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred ccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCc
Confidence 111 33444666666665 6678999999999998887 4544 567888889999999999997 999
Q ss_pred EEEeC
Q 003279 830 VKIWK 834 (834)
Q Consensus 830 I~IWd 834 (834)
|+|||
T Consensus 375 i~iw~ 379 (383)
T 3ei3_B 375 ILIWN 379 (383)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=324.76 Aligned_cols=287 Identities=15% Similarity=0.200 Sum_probs=242.0
Q ss_pred EEecCCCCCeEEEEEcCCCCEE-EEEeC---CCcEEEEeCCCCeEEEEe-ccCCCCeEEEEECCC---CCEEEEEeCCCe
Q 003279 546 QLIPASTSKVESCHFSPDGKLL-ATGGH---DKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPS---LSRLATSSADRT 617 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~L-asgs~---Dg~I~IWd~~t~~~~~~l-~~h~~~I~~l~fspd---g~~Latgs~Dg~ 617 (834)
..+.+|.+.|.+++|+|++..| ++|+. |+.|+|||+.+++..... .+|...|.+++|+|+ +.+|++++.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 4557899999999999999655 55655 899999999998776443 379999999999998 699999999999
Q ss_pred EEEEecCCCCceeeeeccCCCCeEEEEE------ccCCCcEEEEEeCCCcEEEEECCCCc-eeeEeec-----CCCeeEE
Q 003279 618 VRVWDTENPDYSLRTFTGHSTTVMSLDF------HPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC-----QSGATQM 685 (834)
Q Consensus 618 I~IWDl~s~~~~i~~~~~h~~~V~sl~f------spdg~~llasgs~Dg~I~lwDl~s~~-~i~~~~~-----~~~i~~l 685 (834)
|++||+.++...+..+.+|...|.+++| +|++. +|++++.||.|++||++++. .+..+.. ...+.++
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence 9999999877567888999999999965 56665 67799999999999999886 5666653 2268888
Q ss_pred E----EecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcC---CCCEEEEEe-CCeEEEEEcCCCCCcee
Q 003279 686 R----FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT---SGEYLASVS-DELVRVWSIGSGSKGEC 757 (834)
Q Consensus 686 ~----~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~sp---dg~~Lasgs-Dg~I~IwDl~s~~~~~~ 757 (834)
. |++++.++++++.|+.|++||+++++.... ..|...|.+++|+| ++.+|++++ |+.|++||++++.....
T Consensus 171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 249 (357)
T 3i2n_A 171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG 249 (357)
T ss_dssp EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred EEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence 8 678999999999999999999999987555 45889999999999 899999998 99999999987643222
Q ss_pred EE--EeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCe--------------------EEEeccCCCCeEEEEE
Q 003279 758 IH--ELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENK--------------------TLTLSAHDKLVSSLAA 814 (834)
Q Consensus 758 i~--~~~~~~~~I~svafspdg~-~L~sgs~dg~I~Iwdl~~~~--------------------~~~l~~h~~~V~~laf 814 (834)
+. .+..|...|.+++|+|++. +|++++.|+.|++||+..+. ...+..|...|++++|
T Consensus 250 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~ 329 (357)
T 3i2n_A 250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDW 329 (357)
T ss_dssp EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEE
T ss_pred eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEE
Confidence 22 3448899999999999998 89999999999999997532 2367789999999999
Q ss_pred eCCCCEEE-EEecCCcEEEeC
Q 003279 815 STVNGMVA-SASHDKCVKIWK 834 (834)
Q Consensus 815 spdg~~La-Sgs~DG~I~IWd 834 (834)
+|++++|+ +++.||.|+|||
T Consensus 330 s~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 330 SPDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp CSSSTTEEEEEETTSEEEEEE
T ss_pred cCCCCeEEEEecCCCcEEEEE
Confidence 99999888 899999999996
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-36 Score=328.47 Aligned_cols=286 Identities=15% Similarity=0.274 Sum_probs=246.2
Q ss_pred EEecCCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEeCCCCeEEEEecc-----CCCCeEEEEECCC----CCEEEEE
Q 003279 546 QLIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPS----LSRLATS 612 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpd----g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~-----h~~~I~~l~fspd----g~~Latg 612 (834)
....+|.+.|++++|+|+ ...+++++.++.|+|||+.+++.+..+.. |...|++++|+|+ +.+|++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 345599999999999984 45666677778999999998877766643 6678999999998 6799999
Q ss_pred eCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEe----ecCCCeeEEEEe
Q 003279 613 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KCQSGATQMRFQ 688 (834)
Q Consensus 613 s~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~----~~~~~i~~l~~s 688 (834)
+.||.|++||+.+++. +..+.+|...|.+++|+|++..+|++++.||.|++||+++++.+..+ .+...|.+++|+
T Consensus 92 ~~dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 92 GSRGIIRIINPITMQC-IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp ETTCEEEEECTTTCCE-EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred cCCCEEEEEEchhceE-eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence 9999999999998654 77788999999999999944558889999999999999999988887 357789999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEE----------------------------EeCCCCCEEEEEEcCCCCEEEEEe
Q 003279 689 PRLGRILAAAIENYISILDVETQVCRLK----------------------------LQGHKNQVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 689 p~g~~ll~~s~dg~I~iwDl~t~~~~~~----------------------------l~~h~~~I~sl~~spdg~~Lasgs 740 (834)
|++.+|++++.|+.|++||+++++.... ...|...|.+++|+ +.+|++++
T Consensus 171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 248 (366)
T 3k26_A 171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS 248 (366)
T ss_dssp TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence 9999999999999999999997654332 23489999999998 77898888
Q ss_pred -CCeEEEEEcCCCCC-----------ceeEEEeecCCCceEEEEEeCC--CCEEEEEEcCCeEEEEECCCCeE-----EE
Q 003279 741 -DELVRVWSIGSGSK-----------GECIHELSCTGNKFHSCVFHPT--FPSLLVIGCYETLELWNMTENKT-----LT 801 (834)
Q Consensus 741 -Dg~I~IwDl~s~~~-----------~~~i~~~~~~~~~I~svafspd--g~~L~sgs~dg~I~Iwdl~~~~~-----~~ 801 (834)
|+.|++||+.+... ...+..+..|...|.+++|+|+ +.+|++++.|+.|++||+.+++. ..
T Consensus 249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 328 (366)
T 3k26_A 249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT 328 (366)
T ss_dssp SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE
T ss_pred cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceE
Confidence 99999999987632 1347778888999999999999 99999999999999999998753 25
Q ss_pred eccC--CCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 802 LSAH--DKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 802 l~~h--~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+..| ...|++++|+|++++|++++.||.|+|||
T Consensus 329 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 329 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence 6666 79999999999999999999999999997
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-35 Score=326.99 Aligned_cols=278 Identities=17% Similarity=0.253 Sum_probs=245.9
Q ss_pred cCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeC----CCCe------EEEEecc----------CCCCeEEEEECCCCC
Q 003279 549 PASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT----ESFT------VKSTLEE----------HTQWITDVRFSPSLS 607 (834)
Q Consensus 549 ~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~IWd~----~t~~------~~~~l~~----------h~~~I~~l~fspdg~ 607 (834)
..|.+.|++++|+|+++ +||+|+.|+.|+|||+ .+++ ....+.. |.+.|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 45678999999999999 9999999999999999 8887 4555544 688999999999999
Q ss_pred EEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC------
Q 003279 608 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG------ 681 (834)
Q Consensus 608 ~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~------ 681 (834)
+|++++.||.|++||.. ...+..+..|...|.+++|+|++. +|++++.|+.|++||+.+++.+..+.....
T Consensus 122 ~l~~~~~dg~i~i~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 198 (425)
T 1r5m_A 122 SIVTGVENGELRLWNKT--GALLNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTILWNVISGTVMQHFELKETGGSSIN 198 (425)
T ss_dssp EEEEEETTSCEEEEETT--SCEEEEECCCCSCEEEEEECTTSS-EEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred EEEEEeCCCeEEEEeCC--CCeeeeccCCCccEEEEEECCCCC-EEEEEecCCeEEEEECCCCcEEEEeeccccCcccee
Confidence 99999999999999943 335778889999999999999977 566888999999999999998887775433
Q ss_pred ----------eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcC
Q 003279 682 ----------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG 750 (834)
Q Consensus 682 ----------i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~ 750 (834)
+.+++|+++ ..+++++.++.|++||+++++.+..+..|...|.+++|+|++.+|++++ |+.|++||++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 277 (425)
T 1r5m_A 199 AENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG 277 (425)
T ss_dssp -------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred eccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 889999997 6689999999999999999998889999999999999999999999999 9999999999
Q ss_pred CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCc
Q 003279 751 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKC 829 (834)
Q Consensus 751 s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~ 829 (834)
++ ..+..+..|...|.+++|+|++ .|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++++|++++.||.
T Consensus 278 ~~---~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 353 (425)
T 1r5m_A 278 NG---NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ 353 (425)
T ss_dssp SB---SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred CC---ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCe
Confidence 87 5667777889999999999999 9999999999999999999877 66688999999999999999999999999
Q ss_pred EEEeC
Q 003279 830 VKIWK 834 (834)
Q Consensus 830 I~IWd 834 (834)
|+|||
T Consensus 354 i~i~~ 358 (425)
T 1r5m_A 354 VNVYD 358 (425)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=327.57 Aligned_cols=284 Identities=14% Similarity=0.252 Sum_probs=229.0
Q ss_pred CceEEEEecCCCCCcccCCCcccCCCceEEeccC------CCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCC
Q 003279 478 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSL------DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 551 (834)
Q Consensus 478 ~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~------D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH 551 (834)
...++.|++++ .+|++|+. |+.+++|......... .......+|
T Consensus 44 ~V~~v~fSpDG---------------~~las~s~d~~~~wd~~v~~~~~~~~~~~~---------------~~~~~~~~~ 93 (357)
T 4g56_B 44 QIGAVRYRRDG---------------ALLLAASSLSSRTWGGSIWVFKDPEGAPNE---------------SLCTAGVQT 93 (357)
T ss_dssp EEEEEEECSSS---------------CEEEEEECSSSSSCCEEEEEESSCC---CG---------------GGCSEEEEC
T ss_pred CEEEEEECCCC---------------CEEEEEcCCCCccccCeEEEEECCCCCcce---------------eEecccCCC
Confidence 56778888877 67888876 4456666443321110 112234578
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE----EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 627 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~----~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~ 627 (834)
...|++++|+|+++ +++++.||+|+|||+.+++.. ....+|...|++++|+|++++|++|+.|++|++||+.++.
T Consensus 94 ~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~ 172 (357)
T 4g56_B 94 EAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA 172 (357)
T ss_dssp SSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE
T ss_pred CCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence 89999999999985 556788999999999887654 3345899999999999999999999999999999999865
Q ss_pred ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec---CCCeeEEEEecCC-CEEEEEEcCCeE
Q 003279 628 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRL-GRILAAAIENYI 703 (834)
Q Consensus 628 ~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~---~~~i~~l~~sp~g-~~ll~~s~dg~I 703 (834)
.+..+.+|...|.+++|++++..++++++.|+.|++||++++++...+.. ...+.+++|+|++ .+|++++.|+.|
T Consensus 173 -~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i 251 (357)
T 4g56_B 173 -VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNV 251 (357)
T ss_dssp -EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCE
T ss_pred -EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccce
Confidence 47888999999999999999888888999999999999999887766543 4568999999975 577788999999
Q ss_pred EEEECCCCeEEEEEeCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC-CCCEE
Q 003279 704 SILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFPSL 780 (834)
Q Consensus 704 ~iwDl~t~~~~~~l~~h~~~I~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp-dg~~L 780 (834)
++||+++++++..+.+|...|++++|+|++ .+|++++ |++|+|||++++ +++.. ..|...|++++|+| ++.+|
T Consensus 252 ~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---~~~~~-~~H~~~V~~vafsP~d~~~l 327 (357)
T 4g56_B 252 SLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS---EVFRD-LSHRDFVTGVAWSPLDHSKF 327 (357)
T ss_dssp EEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC---EEEEE-CCCSSCEEEEEECSSSTTEE
T ss_pred eEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---cEeEE-CCCCCCEEEEEEeCCCCCEE
Confidence 999999999999999999999999999987 5788888 999999999887 55544 47899999999998 78999
Q ss_pred EEEEcCCeEEEEECCCC
Q 003279 781 LVIGCYETLELWNMTEN 797 (834)
Q Consensus 781 ~sgs~dg~I~Iwdl~~~ 797 (834)
++++.|+.|++|++.+.
T Consensus 328 ~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 328 TTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEETTSCEEEEECC--
T ss_pred EEEcCCCeEEEEECCCC
Confidence 99999999999999654
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=316.67 Aligned_cols=279 Identities=22% Similarity=0.339 Sum_probs=244.1
Q ss_pred CCceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeE
Q 003279 477 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 556 (834)
Q Consensus 477 ~~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~ 556 (834)
....++.|++++ .++++|+.|+.|++|..... .....+..|...|.
T Consensus 65 ~~V~~~~~s~d~---------------~~l~s~s~Dg~v~vWd~~~~-------------------~~~~~~~~~~~~v~ 110 (354)
T 2pbi_B 65 NKVLCMDWCKDK---------------RRIVSSSQDGKVIVWDSFTT-------------------NKEHAVTMPCTWVM 110 (354)
T ss_dssp SCEEEEEECTTS---------------SEEEEEETTSEEEEEETTTC-------------------CEEEEEECSSSCCC
T ss_pred CeEEEEEECCCC---------------CEEEEEeCCCeEEEEECCCC-------------------CcceEEecCCCCEE
Confidence 355667776655 68999999999999965322 12445667889999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCC------eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee
Q 003279 557 SCHFSPDGKLLATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 630 (834)
Q Consensus 557 sl~fSpdg~~Lasgs~Dg~I~IWd~~t~------~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i 630 (834)
+++|+|+|.+||+|+.|+.|++|++... .....+..|...|.+++|+|++..|++++.|++|++||+.++. .+
T Consensus 111 ~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~-~~ 189 (354)
T 2pbi_B 111 ACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ-LL 189 (354)
T ss_dssp EEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EE
T ss_pred EEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe-EE
Confidence 9999999999999999999999998643 3446677899999999999999999999999999999999866 47
Q ss_pred eeeccCCCCeEEEEEccCC-CcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 003279 631 RTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDV 708 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl 708 (834)
..+.+|...|.+++|+|+. ..+|++|+.||.|++||+++++++..+.. ...|.+++|+|++..|++++.|+.|++||+
T Consensus 190 ~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~ 269 (354)
T 2pbi_B 190 QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269 (354)
T ss_dssp EEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 8889999999999999853 35888999999999999999999888864 567999999999999999999999999999
Q ss_pred CCCeEEEEEeCC--CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003279 709 ETQVCRLKLQGH--KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 785 (834)
Q Consensus 709 ~t~~~~~~l~~h--~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~ 785 (834)
+.+..+..+..+ ...+.+++|+|++.+|++++ |+.|++||+.++ ..+..+..|...|.+++|+|++.+|++++.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~~~l~~h~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 270 RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG---SRVSILFGHENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---SEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred CCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC---ceEEEEECCCCcEEEEEECCCCCEEEEEcC
Confidence 999887776643 34789999999999999999 999999999887 677788899999999999999999999999
Q ss_pred CCeEEEEE
Q 003279 786 YETLELWN 793 (834)
Q Consensus 786 dg~I~Iwd 793 (834)
|+.|+||+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 99999996
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=316.28 Aligned_cols=279 Identities=15% Similarity=0.231 Sum_probs=231.5
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
...++++|+.|++|++|........ +........+.+|...|.+++|+|++.+|++|+.|++|+|||+
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~------------~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~ 105 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQN------------GYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDL 105 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCS------------SBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEET
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcc------------cccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 4578999999999999976543211 1122346778999999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeee---ccCCCCeEEEEEccCCC--------
Q 003279 582 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKE-------- 650 (834)
Q Consensus 582 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~---~~h~~~V~sl~fspdg~-------- 650 (834)
.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+... . .... ..|...|.+++|+|++.
T Consensus 106 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 183 (343)
T 2xzm_R 106 RTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-C-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPF 183 (343)
T ss_dssp TSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-E-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSS
T ss_pred CCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-c-eeeeecccCCCceeeeeeeccccccccccCCC
Confidence 999999999999999999999999999999999999999999842 2 2222 37889999999999863
Q ss_pred -cEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC-CeEEEEEeCCCCCEEEE
Q 003279 651 -DLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSV 727 (834)
Q Consensus 651 -~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t-~~~~~~l~~h~~~I~sl 727 (834)
.+|++++.|+.|++||.. ......+. +...|.+++|+|++.+|++++.|+.|++||+.. ......+. +...|.++
T Consensus 184 ~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v 261 (343)
T 2xzm_R 184 APYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQI 261 (343)
T ss_dssp CCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEE
T ss_pred CCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEE
Confidence 478899999999999954 55555554 567799999999999999999999999999954 34444443 55679999
Q ss_pred EEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEee-----------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 728 CWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-----------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 728 ~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~-----------~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
+|+|++.+++++.|+.|++||+.+..... +..+. .|...|.+++|+|++.+|++++.|+.|++|++.+
T Consensus 262 ~~sp~~~~la~~~d~~v~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 262 AFNPKLQWVAVGTDQGVKIFNLMTQSKAP-VCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp EECSSSCEEEEEESSCEEEEESSSCCSCS-EEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred EECCCCCEEEEECCCCEEEEEeCCCCCCc-eEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 99999999988889999999998764322 22222 5677899999999999999999999999999865
Q ss_pred C
Q 003279 797 N 797 (834)
Q Consensus 797 ~ 797 (834)
+
T Consensus 341 g 341 (343)
T 2xzm_R 341 S 341 (343)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-34 Score=315.08 Aligned_cols=280 Identities=21% Similarity=0.354 Sum_probs=230.9
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
.++++|+.|+.|++|..... ..........+|.+.|.+++|+|++++||+|+.|++|+|||+..
T Consensus 29 ~~las~~~D~~i~iw~~~~~----------------~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~ 92 (345)
T 3fm0_A 29 TLLASCGGDRRIRIWGTEGD----------------SWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQ 92 (345)
T ss_dssp SCEEEEETTSCEEEEEEETT----------------EEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECC
T ss_pred CEEEEEcCCCeEEEEEcCCC----------------cceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccC
Confidence 68999999999999954322 11112234478999999999999999999999999999999887
Q ss_pred C--eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc--eeeeeccCCCCeEEEEEccCCCcEEEEEeCC
Q 003279 584 F--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 584 ~--~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~--~i~~~~~h~~~V~sl~fspdg~~llasgs~D 659 (834)
+ +.+..+.+|...|.+++|+|++++|++|+.|++|++||+.+... .+..+.+|...|.+++|+|++. +|++++.|
T Consensus 93 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d 171 (345)
T 3fm0_A 93 DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE-LLASASYD 171 (345)
T ss_dssp C-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS-CEEEEETT
T ss_pred CCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC-EEEEEeCC
Confidence 6 45788899999999999999999999999999999999987542 3567788999999999999976 66799999
Q ss_pred CcEEEEECCCCcee--eEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC---------------CeEEEEEeC-C
Q 003279 660 SEIRYWSINNGSCA--GVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET---------------QVCRLKLQG-H 720 (834)
Q Consensus 660 g~I~lwDl~s~~~i--~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t---------------~~~~~~l~~-h 720 (834)
+.|++||++++... ..+. +...|.+++|+|++.+|++++.|+.|++||... ..++..+.+ |
T Consensus 172 ~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 251 (345)
T 3fm0_A 172 DTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFH 251 (345)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSC
T ss_pred CcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCC
Confidence 99999999887533 3443 466799999999999999999999999999632 234556665 8
Q ss_pred CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc-e-----eEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEE
Q 003279 721 KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-E-----CIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELW 792 (834)
Q Consensus 721 ~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~-~-----~i~~~~~~~~~I~svafspdg~-~L~sgs~dg~I~Iw 792 (834)
...|.+++|++++.+|++++ |+.|++|++...... . ..+....|...|.+++|+|++. +|++++.|+.|++|
T Consensus 252 ~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W 331 (345)
T 3fm0_A 252 SRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331 (345)
T ss_dssp SSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred CCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEE
Confidence 88999999999999999988 999999998765321 1 1223457889999999999984 89999999999999
Q ss_pred ECCCCeEE
Q 003279 793 NMTENKTL 800 (834)
Q Consensus 793 dl~~~~~~ 800 (834)
++.+++..
T Consensus 332 ~~~~~~~~ 339 (345)
T 3fm0_A 332 KYQRPEGL 339 (345)
T ss_dssp EECC----
T ss_pred EecCCCCc
Confidence 99887754
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=334.32 Aligned_cols=285 Identities=14% Similarity=0.186 Sum_probs=230.9
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC
Q 003279 547 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 547 ~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~--~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 624 (834)
.+..|.++|++++|+|++++||+|+.|+.|+|||+.++ +.+..+.+|...|.+++|+|++++|++++.|++|++||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 34457789999999999999999999999999999988 7788899999999999999999999999999999999999
Q ss_pred CCC--ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc---eeeEee--cCCCeeEEEEecCCCEEEEE
Q 003279 625 NPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFK--CQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 625 s~~--~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~---~i~~~~--~~~~i~~l~~sp~g~~ll~~ 697 (834)
++. .....+..|...|.+++|+|++. +|++++.|+.|++||+++++ +...+. +...|.+++|+|++.+|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 765 23566778999999999999976 56688999999999999877 355555 56789999999999999999
Q ss_pred EcCCeEEEEECC------------------CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc-ee
Q 003279 698 AIENYISILDVE------------------TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-EC 757 (834)
Q Consensus 698 s~dg~I~iwDl~------------------t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~-~~ 757 (834)
+.|+.|++||++ .++++..+ +|...|.+++|+|++++|++++ |+.|++||+.++... ..
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 243 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA 243 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence 999999999985 35566667 8999999999999999999998 999999999987431 12
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeE--------------------------------------
Q 003279 758 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT-------------------------------------- 799 (834)
Q Consensus 758 i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~-------------------------------------- 799 (834)
+..+..|...|.+++|+|++.+|++++.++.+ +|+......
T Consensus 244 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (377)
T 3dwl_C 244 LITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRS 322 (377)
T ss_dssp CCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------
T ss_pred eEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccc
Confidence 67788899999999999999988777655555 776642110
Q ss_pred -E--------------EeccCCCCeEEEEEeCCC-C---EEEEEecCCcEEEeC
Q 003279 800 -L--------------TLSAHDKLVSSLAASTVN-G---MVASASHDKCVKIWK 834 (834)
Q Consensus 800 -~--------------~l~~h~~~V~~lafspdg-~---~LaSgs~DG~I~IWd 834 (834)
+ ....|...|+++++.+.. . .|+||+.||.|+|||
T Consensus 323 ~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 323 TFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp --------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred cccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 0 011299999999976644 3 699999999999997
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=304.33 Aligned_cols=268 Identities=24% Similarity=0.416 Sum_probs=238.3
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
.++++|+.|+.+++|...+. .....+.+|...|.+++|+|++++|++|+.|+.|++||+.+
T Consensus 36 ~~l~s~~~dg~i~iw~~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 96 (312)
T 4ery_A 36 EWLASSSADKLIKIWGAYDG-------------------KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 96 (312)
T ss_dssp SEEEEEETTSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CEEEEeeCCCeEEEEeCCCc-------------------ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC
Confidence 68999999999999965332 13456789999999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 663 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 663 (834)
++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+.++. .+..+..|...|.+++|+|++. +|++++.||.|+
T Consensus 97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~ 174 (312)
T 4ery_A 97 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCR 174 (312)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-EEEEecCCCCcEEEEEEcCCCC-EEEEEeCCCcEE
Confidence 99999999999999999999999999999999999999999865 4778888999999999999976 677999999999
Q ss_pred EEECCCCceeeEeec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEE---EEEcCCCCEEEE
Q 003279 664 YWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS---VCWNTSGEYLAS 738 (834)
Q Consensus 664 lwDl~s~~~i~~~~~--~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~s---l~~spdg~~Las 738 (834)
+||+++++.+..+.. ...+..++|+|++.+|++++.|+.|++||+++++++..+.+|...+.+ ....+++.+|++
T Consensus 175 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 254 (312)
T 4ery_A 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254 (312)
T ss_dssp EEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEE
T ss_pred EEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEE
Confidence 999999988777643 456899999999999999999999999999999999999888765432 233467889999
Q ss_pred Ee-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE--cCCeEEEEECC
Q 003279 739 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG--CYETLELWNMT 795 (834)
Q Consensus 739 gs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs--~dg~I~Iwdl~ 795 (834)
++ |+.|++||+.++ ..+..+..|...|.+++|+|++..|++++ .|+.|++|+.+
T Consensus 255 g~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 255 GSEDNLVYIWNLQTK---EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ECCCCEEEEEECCCc---hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 88 999999999987 67888999999999999999999999987 58899999864
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-35 Score=331.40 Aligned_cols=284 Identities=14% Similarity=0.240 Sum_probs=236.9
Q ss_pred EEEEe-cCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCC---Ce---EEEEeccCCCCeEEEEECCCCCEEEEEeCC
Q 003279 544 EFQLI-PASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES---FT---VKSTLEEHTQWITDVRFSPSLSRLATSSAD 615 (834)
Q Consensus 544 ~~~~l-~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~IWd~~t---~~---~~~~l~~h~~~I~~l~fspdg~~Latgs~D 615 (834)
.+..+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+ +. ....+ .|...|++++|+|++.+|++++.|
T Consensus 54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d 132 (437)
T 3gre_A 54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKD 132 (437)
T ss_dssp EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCC
Confidence 45666 89999999999999 999999999999999999876 33 23333 599999999999999999999999
Q ss_pred CeEEEEecC---CCCceeeeec----------c--CCCCeEEEE--EccCCCcEEEEEeCCCcEEEEECCCCceeeEeec
Q 003279 616 RTVRVWDTE---NPDYSLRTFT----------G--HSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 678 (834)
Q Consensus 616 g~I~IWDl~---s~~~~i~~~~----------~--h~~~V~sl~--fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~ 678 (834)
|.|++||+. ++.. ...+. . +...+.++. +++++ .++++++.|+.|++||+++++++..+..
T Consensus 133 g~i~vwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 210 (437)
T 3gre_A 133 GQIIVLKVNHYQQESE-VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERLQIIEN 210 (437)
T ss_dssp SEEEEEEEEEEEETTE-EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEEeccccCCce-eeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence 999999995 3322 22222 1 456667776 44664 4777999999999999999999988874
Q ss_pred ---CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe-CCCCCEEEEEEcC----CCCEEEEEe-CCeEEEEEc
Q 003279 679 ---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNT----SGEYLASVS-DELVRVWSI 749 (834)
Q Consensus 679 ---~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~-~h~~~I~sl~~sp----dg~~Lasgs-Dg~I~IwDl 749 (834)
...|.+++|+|++.+|++++.||.|++||+++++++..+. .|...|.+++|+| ++.+|++++ |+.|++||+
T Consensus 211 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 290 (437)
T 3gre_A 211 SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF 290 (437)
T ss_dssp CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence 5789999999999999999999999999999999999886 7888999996664 677999998 999999999
Q ss_pred CCCCCceeEEEeec--------------------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-Ee
Q 003279 750 GSGSKGECIHELSC--------------------------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL 802 (834)
Q Consensus 750 ~s~~~~~~i~~~~~--------------------------~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l 802 (834)
+++ .++..+.. |...|.+++|+ ++.+|++++.|+.|++||+.+++.. .+
T Consensus 291 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 366 (437)
T 3gre_A 291 VKG---HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAV 366 (437)
T ss_dssp TTT---EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred CCC---cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEE
Confidence 987 55555443 44568889999 7789999999999999999887644 22
Q ss_pred cc-------------------------------------CCCCeEEEEEeCC--CCEEEEEecCCcEEEeC
Q 003279 803 SA-------------------------------------HDKLVSSLAASTV--NGMVASASHDKCVKIWK 834 (834)
Q Consensus 803 ~~-------------------------------------h~~~V~~lafspd--g~~LaSgs~DG~I~IWd 834 (834)
.+ |...|++++|+++ +.+|++|+.||.|+||+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 367 ISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 22 8999999999998 77999999999999996
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=366.61 Aligned_cols=310 Identities=21% Similarity=0.379 Sum_probs=270.7
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
.++++|+.|+.|++|..... ..+..+.+|.+.|.+++|+|++++||+|+.|+.|+|||+.+
T Consensus 628 ~~l~s~~~d~~i~vw~~~~~-------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 628 QRIASCGADKTLQVFKAETG-------------------EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp SEEEEEETTSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CEEEEEeCCCeEEEEECCCC-------------------CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 78999999999999966432 24567789999999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEECC--CCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc
Q 003279 584 FTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 661 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 661 (834)
++.+..+.+|...|.+++|+| ++.++++++.|+.|++||+.++. .+..+.+|...|.+++|+|++. ++++++.||.
T Consensus 689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~ 766 (1249)
T 3sfz_A 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-CRNTMFGHTNSVNHCRFSPDDE-LLASCSADGT 766 (1249)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-EEEEECCCSSCEEEEEECSSTT-EEEEEESSSE
T ss_pred CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-hhheecCCCCCEEEEEEecCCC-EEEEEECCCe
Confidence 999999999999999999999 56689999999999999999866 4778889999999999999977 6779999999
Q ss_pred EEEEECCCCceeeEee--------------------------------------------------------cCCCeeEE
Q 003279 662 IRYWSINNGSCAGVFK--------------------------------------------------------CQSGATQM 685 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~--------------------------------------------------------~~~~i~~l 685 (834)
|++||+.++.....+. +...+.++
T Consensus 767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~ 846 (1249)
T 3sfz_A 767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC 846 (1249)
T ss_dssp EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEE
T ss_pred EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEE
Confidence 9999998775443321 23567889
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce--------
Q 003279 686 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE-------- 756 (834)
Q Consensus 686 ~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~-------- 756 (834)
+|+|++..+++++.++.|++||+.++..+..+.+|...|.+++|+|++.+|++++ |+.|++||+.+.....
T Consensus 847 ~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~ 926 (1249)
T 3sfz_A 847 DFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEI 926 (1249)
T ss_dssp EECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccccee
Confidence 9999999999999999999999999999999999999999999999999999999 9999999975321000
Q ss_pred ------------------eEE--------EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCe
Q 003279 757 ------------------CIH--------ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLV 809 (834)
Q Consensus 757 ------------------~i~--------~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V 809 (834)
.+. ........+.+++|+|++.++++++.+|.|++||+.+++.+ .+.+|...|
T Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v 1006 (1249)
T 3sfz_A 927 DVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1006 (1249)
T ss_dssp EEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCC
T ss_pred eEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCce
Confidence 000 01123457899999999999999999999999999998877 667899999
Q ss_pred EEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 810 SSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 810 ~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.+++|+|++++|++++.||.|++||
T Consensus 1007 ~~l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A 1007 RHIQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp CCEEECSSSSCEEEECSSSBEEEEE
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEE
Confidence 9999999999999999999999996
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=317.18 Aligned_cols=288 Identities=22% Similarity=0.340 Sum_probs=230.6
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
..++++|+ ++.+++|...+................. ..........+...|.+++|+|||++||+|+.|+.|+|||+.
T Consensus 76 g~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~ 153 (393)
T 1erj_A 76 GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP-ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE 153 (393)
T ss_dssp SSEEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCEEEEEc-CCcEEEEEecCCCEEEEecCcccccccc-ccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 36888876 6889999765432110000000000000 000011122345569999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 003279 583 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 662 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 662 (834)
+++.+..+.+|...|.+++|+|++.+|++++.|++|++||+.++.. ...+. +...|.+++|+|....+|++|+.|+.|
T Consensus 154 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v 231 (393)
T 1erj_A 154 NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAV 231 (393)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSTTCCEEEEEETTSCE
T ss_pred CCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee-EEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcE
Confidence 9999999999999999999999999999999999999999998653 33333 667899999999545688899999999
Q ss_pred EEEECCCCceeeEee--------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC------------eEEEEEeCCCC
Q 003279 663 RYWSINNGSCAGVFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQ------------VCRLKLQGHKN 722 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~--------~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~------------~~~~~l~~h~~ 722 (834)
++||++++..+..+. +...|.+++|+|++.+|++++.|+.|++||+++. .+...+.+|..
T Consensus 232 ~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~ 311 (393)
T 1erj_A 232 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 311 (393)
T ss_dssp EEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSS
T ss_pred EEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccC
Confidence 999999998877662 4567999999999999999999999999999753 45667888999
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC------CCCEEEEEEcCCeEEEEECC
Q 003279 723 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP------TFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 723 ~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp------dg~~L~sgs~dg~I~Iwdl~ 795 (834)
.|.+++|++++.+|++++ |+.|++||+.++ .++..+.+|...|.+++|++ ++.+|++++.|+.|+||++.
T Consensus 312 ~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~---~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 312 FVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp CEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEECCCC---eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 999999999999999999 999999999988 67888899999999999986 67899999999999999976
Q ss_pred CC
Q 003279 796 EN 797 (834)
Q Consensus 796 ~~ 797 (834)
..
T Consensus 389 ~~ 390 (393)
T 1erj_A 389 KI 390 (393)
T ss_dssp EC
T ss_pred cc
Confidence 53
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=318.43 Aligned_cols=299 Identities=17% Similarity=0.260 Sum_probs=258.5
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
.++++|+.|+.|++|..... ..+..+.+|.+.|++++|++++ +|++|+.||+|++||+.+
T Consensus 133 ~~l~sgs~dg~i~vwd~~~~-------------------~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~ 192 (464)
T 3v7d_B 133 NYVITGADDKMIRVYDSINK-------------------KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK 192 (464)
T ss_dssp TEEEEEETTSCEEEEETTTT-------------------EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTT
T ss_pred CEEEEEcCCCcEEEEECCCC-------------------cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC
Confidence 58999999999999965332 3466788999999999999988 999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEEC--CCCCEEEEEeCCCeEEEEecCCCCce----------------------eeeeccCCCC
Q 003279 584 FTVKSTLEEHTQWITDVRFS--PSLSRLATSSADRTVRVWDTENPDYS----------------------LRTFTGHSTT 639 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fs--pdg~~Latgs~Dg~I~IWDl~s~~~~----------------------i~~~~~h~~~ 639 (834)
++.+..+.+|...|.+++|+ +++.+|++++.|++|++||+.+.... +..+.+|...
T Consensus 193 ~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (464)
T 3v7d_B 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272 (464)
T ss_dssp TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSC
T ss_pred CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccce
Confidence 99999999999999999998 57889999999999999999875432 4567789999
Q ss_pred eEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe
Q 003279 640 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 718 (834)
Q Consensus 640 V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~ 718 (834)
|.++... +. ++++++.|+.|++||+++++++..+. +...+.+++|+|++..+++++.|+.|++||+++++++..+.
T Consensus 273 v~~~~~~--~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 349 (464)
T 3v7d_B 273 VRTVSGH--GN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ 349 (464)
T ss_dssp EEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEEEcCC--CC-EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Confidence 9888544 44 77799999999999999999988887 46779999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003279 719 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 797 (834)
Q Consensus 719 ~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~ 797 (834)
+|...|.+++|+ +.+|++++ |+.|++||+.+.. ..... .+...+..++|++++.+|++++ |+.|++||+.++
T Consensus 350 ~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~---~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 350 GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS---RKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC---EEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc---eeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 999999999997 57888888 9999999999863 33333 3566788889999999888888 899999999999
Q ss_pred eEEE--eccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 798 KTLT--LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 798 ~~~~--l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
+.+. +..|...|.+++|+ +..++++++.||.+.+|
T Consensus 423 ~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 423 KLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp CEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred cEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 9884 56889999999998 44566666778776655
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-34 Score=351.92 Aligned_cols=200 Identities=13% Similarity=0.129 Sum_probs=168.1
Q ss_pred CceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEE
Q 003279 478 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 557 (834)
Q Consensus 478 ~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~s 557 (834)
...++.|++++ .++++|+.|+.|++|..... . ......|...|.+
T Consensus 19 ~V~~lafspdg---------------~~lAsgs~Dg~I~lw~~~~~-------------------~-~~~~~~~~~~V~~ 63 (902)
T 2oaj_A 19 KPIAAAFDFTQ---------------NLLAIATVTGEVHIYGQQQV-------------------E-VVIKLEDRSAIKE 63 (902)
T ss_dssp CEEEEEEETTT---------------TEEEEEETTSEEEEECSTTC-------------------E-EEEECSSCCCEEE
T ss_pred CcEEEEECCCC---------------CEEEEEeCCCEEEEEeCCCc-------------------E-EEEEcCCCCCEEE
Confidence 45566666654 78999999999999953211 1 1122357889999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee-------
Q 003279 558 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL------- 630 (834)
Q Consensus 558 l~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i------- 630 (834)
++|+| |++|++++.|++|+|||+.+++.+..+. |...|++++|+|++++|++|+.||+|++||+.+.....
T Consensus 64 l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~ 141 (902)
T 2oaj_A 64 MRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQ 141 (902)
T ss_dssp EEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHH
T ss_pred EEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccc
Confidence 99999 8899999999999999999999988885 77899999999999999999999999999998765311
Q ss_pred ---eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC-------------------CCeeEEEEe
Q 003279 631 ---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------------SGATQMRFQ 688 (834)
Q Consensus 631 ---~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~-------------------~~i~~l~~s 688 (834)
..+.+|...|.+++|+|++..++++|+.||.| +||+++++++..+..+ ..|.+++|+
T Consensus 142 ~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 142 KSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp HHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred ccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 23467899999999999866688899999999 9999999988877654 569999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEE
Q 003279 689 PRLGRILAAAIENYISILDVETQVCRL 715 (834)
Q Consensus 689 p~g~~ll~~s~dg~I~iwDl~t~~~~~ 715 (834)
|++.+|++++.|+.|++||+++++++.
T Consensus 221 pdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 221 PNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp TTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred CCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 999999999999999999998766543
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=330.72 Aligned_cols=279 Identities=20% Similarity=0.307 Sum_probs=245.1
Q ss_pred CCeEEEEEcCCCC-EEEEE----------eCCCcEEEEeCCCCe---EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 003279 553 SKVESCHFSPDGK-LLATG----------GHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 618 (834)
Q Consensus 553 ~~V~sl~fSpdg~-~Lasg----------s~Dg~I~IWd~~t~~---~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I 618 (834)
..|.+++|+|+++ +|++| +.|+.|+|||+.++. .+..+ .|...|++++|+|++.+|++++.||.|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeE
Confidence 3588999999997 99999 889999999999875 33334 588999999999999999999999999
Q ss_pred EEEecCC---CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc------eeeEe----ecCCCeeEE
Q 003279 619 RVWDTEN---PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------CAGVF----KCQSGATQM 685 (834)
Q Consensus 619 ~IWDl~s---~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~------~i~~~----~~~~~i~~l 685 (834)
++||+.+ +...+..+.+|...|.+++|+|++..+|++++.|+.|++||+.+++ ....+ .+...+.++
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL 171 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEE
T ss_pred EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEE
Confidence 9999987 2335788889999999999999966688899999999999999876 33322 356789999
Q ss_pred EEecC-CCEEEEEEcCCeEEEEECCCCeEEEEEeCC------CCCEEEEEEcCCC-CEEEEEe-CC---eEEEEEcCCCC
Q 003279 686 RFQPR-LGRILAAAIENYISILDVETQVCRLKLQGH------KNQVHSVCWNTSG-EYLASVS-DE---LVRVWSIGSGS 753 (834)
Q Consensus 686 ~~sp~-g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h------~~~I~sl~~spdg-~~Lasgs-Dg---~I~IwDl~s~~ 753 (834)
+|+|+ +..|++++.|+.|++||+++++.+..+..| ...|.+++|+|++ .+|++++ |+ .|++||+++..
T Consensus 172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~ 251 (416)
T 2pm9_A 172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN 251 (416)
T ss_dssp EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence 99999 788999999999999999999999988876 7899999999997 6888888 77 99999999863
Q ss_pred CceeEEEee-cCCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCC-CEEEEEecCCc
Q 003279 754 KGECIHELS-CTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKC 829 (834)
Q Consensus 754 ~~~~i~~~~-~~~~~I~svafsp-dg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg-~~LaSgs~DG~ 829 (834)
..+..+. .|...|.+++|+| ++.+|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++ .+|++++.||.
T Consensus 252 --~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~ 329 (416)
T 2pm9_A 252 --TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK 329 (416)
T ss_dssp --SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred --CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence 3455566 7889999999999 9999999999999999999998877 677899999999999999 89999999999
Q ss_pred EEEeC
Q 003279 830 VKIWK 834 (834)
Q Consensus 830 I~IWd 834 (834)
|+|||
T Consensus 330 i~iw~ 334 (416)
T 2pm9_A 330 IEVQT 334 (416)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=309.64 Aligned_cols=278 Identities=17% Similarity=0.245 Sum_probs=243.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc--
Q 003279 551 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-- 628 (834)
Q Consensus 551 H~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~-- 628 (834)
|.+.|.+++|+|||++++++..++.+.+|+...........+|...|++++|+|++++|++++ ||.|++||+.++..
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 455799999999999999998888888877666555555558999999999999999999998 99999999987543
Q ss_pred eeeeec--cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc--eeeEee-cCCCeeEEEEecCCCEEEEEEcCCeE
Q 003279 629 SLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFK-CQSGATQMRFQPRLGRILAAAIENYI 703 (834)
Q Consensus 629 ~i~~~~--~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~--~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I 703 (834)
.+..+. .|...|.+++|+|++. ++++++.|+.|++||+++++ ....+. +...+.+++|+|++.++++++.|+.|
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeecccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 122222 7899999999999976 66688899999999999887 344444 35669999999999999999999999
Q ss_pred EEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003279 704 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 704 ~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~s 782 (834)
++||+++++.+..+..|...|.+++|+|++.+|++++ |+.|++||++++ ..+..+. +...+.+++|+|++.+|++
T Consensus 166 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~-~~~~v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---RQLQQHD-FTSQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEE-CSSCEEEEEECTTSSEEEE
T ss_pred EEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC---ceEeeec-CCCceEEEEECCCCCEEEE
Confidence 9999999999999999999999999999999999998 999999999987 5555543 6778999999999999999
Q ss_pred EEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 783 IGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 783 gs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++.++.|++||+.+++...+..|...|.+++|+|++++|++++.||.|++||
T Consensus 242 ~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 242 GMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 9999999999999999888999999999999999999999999999999996
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=344.63 Aligned_cols=311 Identities=9% Similarity=0.048 Sum_probs=234.2
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC------CCEEEEEeCCCcE
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD------GKLLATGGHDKKA 576 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpd------g~~Lasgs~Dg~I 576 (834)
...+++++.|++|++|....... .......+.+|.+.|.+|+|+|+ +.+||+|+.||+|
T Consensus 173 ~~~laS~s~D~tI~iWd~~~~~~---------------~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgtv 237 (524)
T 2j04_B 173 LEMFDKEKHSSCIQIFKMNTSTL---------------HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTI 237 (524)
T ss_dssp ---------CEEEEEEEEETTTC---------------CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCE
T ss_pred hhhhccCCCCceEEEEEccCCCC---------------CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeE
Confidence 34678899999999996533210 11123456788999999999997 5799999999999
Q ss_pred EEEeCCCCeE-----------EEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEE--
Q 003279 577 VLWCTESFTV-----------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL-- 643 (834)
Q Consensus 577 ~IWd~~t~~~-----------~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl-- 643 (834)
+|||+.++.. ...+.+|...|++++|+++ ..|++|+.||+|++||+.++..+...+.+|...|.+|
T Consensus 238 rlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~ 316 (524)
T 2j04_B 238 NFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVST 316 (524)
T ss_dssp EEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEE
T ss_pred EEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEE
Confidence 9999986532 2467889999999999986 4899999999999999997665566788999999999
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC---CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 003279 644 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH 720 (834)
Q Consensus 644 ~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~---~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h 720 (834)
+|++++..+|++|+.|++|+|||++++++...+..+ ..+.+++|+|++..+++++.|+.|++||++++.++..+.+|
T Consensus 317 ~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH 396 (524)
T 2j04_B 317 AYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSR 396 (524)
T ss_dssp ECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEEC
T ss_pred EcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecC
Confidence 567776468999999999999999988877666532 24789999999999999999999999999999888888899
Q ss_pred CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-----cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 721 KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-----CTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 721 ~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-----~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
...|++|+|+|++.+|++|+ |++|++||+... .+.... .+...+.+++|+|++..+. ...+-.+..|+.
T Consensus 397 ~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~----~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~~~~~~~~~ 471 (524)
T 2j04_B 397 ETTITAIGVSRLHPMVLAGSADGSLIITNAARR----LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSSYEVYPLTV 471 (524)
T ss_dssp SSCEEEEECCSSCCBCEEEETTTEEECCBSCSS----TTTCC------CCCCEEEECBCCSSSCEEE-ECCCCCCCC---
T ss_pred CCceEEEEeCCCCCeEEEEECCCEEEEEechHh----hccccccCccceeeeEEEEeccCCCCCeEE-ccCCceeccccc
Confidence 99999999999999999999 999999998653 111111 1122577899999998442 222222333333
Q ss_pred CCCeEEEeccCCCCeEEEEEeCCCC---EEEEEecCCcEEEeC
Q 003279 795 TENKTLTLSAHDKLVSSLAASTVNG---MVASASHDKCVKIWK 834 (834)
Q Consensus 795 ~~~~~~~l~~h~~~V~~lafspdg~---~LaSgs~DG~I~IWd 834 (834)
.......+.+|...|.+|+|+|++. +||+|+.||.|+||+
T Consensus 472 ~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 472 NDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp ----------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred CCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 3444457889999999999999964 999999999999995
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=344.76 Aligned_cols=319 Identities=19% Similarity=0.280 Sum_probs=276.8
Q ss_pred CceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEE
Q 003279 478 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 557 (834)
Q Consensus 478 ~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~s 557 (834)
...++.|++++ .++++|+.|+.|++|..... ..+..+.+|.+.|++
T Consensus 15 ~v~~i~~sp~~---------------~~la~~~~~g~v~iwd~~~~-------------------~~~~~~~~~~~~v~~ 60 (814)
T 3mkq_A 15 RVKGIDFHPTE---------------PWVLTTLYSGRVEIWNYETQ-------------------VEVRSIQVTETPVRA 60 (814)
T ss_dssp CEEEEEECSSS---------------SEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSCEEE
T ss_pred ceEEEEECCCC---------------CEEEEEeCCCEEEEEECCCC-------------------ceEEEEecCCCcEEE
Confidence 45566676655 78999999999999965332 245677899999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCC
Q 003279 558 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 637 (834)
Q Consensus 558 l~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~ 637 (834)
++|+|++++|++|+.||.|+|||+.+++.+..+.+|.+.|++++|+|++.+|++++.||.|++||+.++......+.+|.
T Consensus 61 ~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 140 (814)
T 3mkq_A 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE 140 (814)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCS
T ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998766678888999
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC--CCeeEEEEec--CCCEEEEEEcCCeEEEEECCCCeE
Q 003279 638 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQP--RLGRILAAAIENYISILDVETQVC 713 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~--~~i~~l~~sp--~g~~ll~~s~dg~I~iwDl~t~~~ 713 (834)
..|.+++|+|++..++++++.||.|++||+.++.....+..+ ..+.+++|+| ++.++++++.|+.|++||++++.+
T Consensus 141 ~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 220 (814)
T 3mkq_A 141 HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220 (814)
T ss_dssp SCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE
T ss_pred CcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 999999999944557889999999999999988877766643 6799999999 999999999999999999999999
Q ss_pred EEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE-EEEEEcCCeEEE
Q 003279 714 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLEL 791 (834)
Q Consensus 714 ~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~-L~sgs~dg~I~I 791 (834)
+..+.+|...|.+++|+|++.+|++++ |+.|++||+.++ ..+..+..+...+.+++|+|++.. +++++.++.+.+
T Consensus 221 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 297 (814)
T 3mkq_A 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY---KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (814)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---SEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEE
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEE
Confidence 999999999999999999999999999 999999999987 678888888999999999999874 366666778888
Q ss_pred EECCCCe----------EEE----------------------------------eccCCCCeEEEEEeCCCCEEEEEecC
Q 003279 792 WNMTENK----------TLT----------------------------------LSAHDKLVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 792 wdl~~~~----------~~~----------------------------------l~~h~~~V~~lafspdg~~LaSgs~D 827 (834)
|++.... .+. +..+...+.+++|+|+|++|++++ |
T Consensus 298 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~ 376 (814)
T 3mkq_A 298 LSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-D 376 (814)
T ss_dssp EECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-T
T ss_pred EEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-C
Confidence 9875432 111 123445688999999999999888 8
Q ss_pred CcEEEeC
Q 003279 828 KCVKIWK 834 (834)
Q Consensus 828 G~I~IWd 834 (834)
|.+.||+
T Consensus 377 ~~~~i~~ 383 (814)
T 3mkq_A 377 GEYVIYT 383 (814)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 8899985
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=317.72 Aligned_cols=296 Identities=20% Similarity=0.361 Sum_probs=261.8
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
..++++|+.|+.|++|..... ..+..+.+|.+.|++++|+ +.+|++|+.||+|++||+.
T Consensus 129 g~~l~sg~~dg~i~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAVTG-------------------KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTC-------------------CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred CCEEEEEECCCcEEEEECCCC-------------------cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence 368899999999999965432 2356778999999999998 5699999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 003279 583 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 662 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 662 (834)
+++.+..+.+|...|.+++|+ +..|++|+.||.|++||+.++. .+..+.+|...|.+++| ++. ++++++.||.|
T Consensus 188 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i 261 (445)
T 2ovr_B 188 TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQ-CLHVLMGHVAAVRCVQY--DGR-RVVSGAYDFMV 261 (445)
T ss_dssp TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCC-EEEEEECCSSCEEEEEE--CSS-CEEEEETTSCE
T ss_pred cCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCc-EEEEEcCCcccEEEEEE--CCC-EEEEEcCCCEE
Confidence 999999999999999999995 5689999999999999999866 47788899999999999 344 67799999999
Q ss_pred EEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-
Q 003279 663 RYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 740 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs- 740 (834)
++||+++++++..+.. ...+.++.| ++.++++++.|+.|++||+++++++..+.+|...+.++.++ +.+|++++
T Consensus 262 ~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 337 (445)
T 2ovr_B 262 KVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNA 337 (445)
T ss_dssp EEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEET
T ss_pred EEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeC
Confidence 9999999999888874 567888888 78899999999999999999999999999999999998875 66888888
Q ss_pred CCeEEEEEcCCCCCceeEEEeec---CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-e-----ccCCCCeEE
Q 003279 741 DELVRVWSIGSGSKGECIHELSC---TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-L-----SAHDKLVSS 811 (834)
Q Consensus 741 Dg~I~IwDl~s~~~~~~i~~~~~---~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~-l-----~~h~~~V~~ 811 (834)
|+.|++||++++ ..+..+.. |...|.+++|+ +.+|++++.|+.|++||+.+++.+. + ..|.+.|++
T Consensus 338 dg~i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 412 (445)
T 2ovr_B 338 DSTVKIWDIKTG---QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 412 (445)
T ss_dssp TSCEEEEETTTC---CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEE
T ss_pred CCeEEEEECCCC---cEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEE
Confidence 999999999887 56667665 78889999996 5799999999999999999998773 3 378899999
Q ss_pred EEEeCCCCEEEEEecCCc----EEEeC
Q 003279 812 LAASTVNGMVASASHDKC----VKIWK 834 (834)
Q Consensus 812 lafspdg~~LaSgs~DG~----I~IWd 834 (834)
++|+|++.+|++|+.||+ |.|||
T Consensus 413 ~~~s~~~~~la~~~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 413 IRASNTKLVCAVGSRNGTEETKLLVLD 439 (445)
T ss_dssp EEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred EEecCCEEEEEEcccCCCCccEEEEEE
Confidence 999999999999999998 99996
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=320.00 Aligned_cols=280 Identities=18% Similarity=0.302 Sum_probs=246.5
Q ss_pred eEEEEecCCCCCe-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 003279 543 TEFQLIPASTSKV-ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 621 (834)
Q Consensus 543 ~~~~~l~gH~~~V-~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 621 (834)
.....+.+|.+.| .|+.| ++++|++|+.||+|++||+.+++.+..+.+|.+.|++++|++++ +|++|+.||+|++|
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 3456788999885 66666 56799999999999999999999999999999999999999987 99999999999999
Q ss_pred ecCCCCceeeeeccCCCCeEEEEEccC-CCcEEEEEeCCCcEEEEECCCCceee-----------------------Eee
Q 003279 622 DTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNGSCAG-----------------------VFK 677 (834)
Q Consensus 622 Dl~s~~~~i~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~lwDl~s~~~i~-----------------------~~~ 677 (834)
|+.++. .+..+.+|...|.+++|++. +..++++++.|+.|++||++++.... .+.
T Consensus 189 d~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 189 DIKKGC-CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp ETTTTE-EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred ECCCCc-EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 999865 47888899999999999962 34578899999999999998876432 222
Q ss_pred -cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc
Q 003279 678 -CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 755 (834)
Q Consensus 678 -~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~ 755 (834)
+...+.+ +++++.++++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++ |+.|++||++++
T Consensus 268 ~~~~~v~~--~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--- 342 (464)
T 3v7d_B 268 GHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG--- 342 (464)
T ss_dssp CCSSCEEE--EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT---
T ss_pred CccceEEE--EcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---
Confidence 2233444 477889999999999999999999999999999999999999999999999999 999999999987
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 756 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 756 ~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.++..+..|...|.+++|+ +.+|++++.|+.|++||+.++.......|...+..++|++++.+|++++ ||.|+|||
T Consensus 343 ~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd 418 (464)
T 3v7d_B 343 ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYN 418 (464)
T ss_dssp EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence 7888999999999999998 4789999999999999999988776667888899999999999999998 89999996
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=329.96 Aligned_cols=302 Identities=18% Similarity=0.234 Sum_probs=251.7
Q ss_pred eEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCC---CeEEEEEcCC-CCEEEEEeCCCcEEEEe
Q 003279 505 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPD-GKLLATGGHDKKAVLWC 580 (834)
Q Consensus 505 ~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~---~V~sl~fSpd-g~~Lasgs~Dg~I~IWd 580 (834)
++++++.|+.+++|.... ...+..+.+|.. .|.+++|+|+ +++|++++.|+.|++||
T Consensus 175 ~l~~~~~d~~v~vwd~~~-------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 235 (615)
T 1pgu_A 175 RSMTVGDDGSVVFYQGPP-------------------FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 235 (615)
T ss_dssp EEEEEETTTEEEEEETTT-------------------BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred EEEEEeCCCcEEEEeCCC-------------------cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 789999999999996322 134567889999 9999999999 99999999999999999
Q ss_pred CCCCeEEEEe-c---cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCce---------------------------
Q 003279 581 TESFTVKSTL-E---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--------------------------- 629 (834)
Q Consensus 581 ~~t~~~~~~l-~---~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~--------------------------- 629 (834)
+.+++.+..+ . .|...|.+++|+ ++.+|++++.|+.|++||+.++...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 314 (615)
T 1pgu_A 236 GKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 314 (615)
T ss_dssp TTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEE
T ss_pred CCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEE
Confidence 9999999999 6 899999999999 9999999999999999999854321
Q ss_pred -----------------eeeeccCCCCeEEEEEccC---------------------------------CCcEEEEEeCC
Q 003279 630 -----------------LRTFTGHSTTVMSLDFHPS---------------------------------KEDLLCSCDNN 659 (834)
Q Consensus 630 -----------------i~~~~~h~~~V~sl~fspd---------------------------------g~~llasgs~D 659 (834)
+..+.+|...|.+++| |+ +. .+++++.|
T Consensus 315 ~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d 392 (615)
T 1pgu_A 315 LSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQ-EYSSISWD 392 (615)
T ss_dssp EETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTT-CCEEEETT
T ss_pred EECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCc-EEEEEeCC
Confidence 1222334444444444 32 23 34456666
Q ss_pred CcEEEEECC----------------------------------CCceeeEeecCCCeeEEEEecCCCEEEEEEc-CCeEE
Q 003279 660 SEIRYWSIN----------------------------------NGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYIS 704 (834)
Q Consensus 660 g~I~lwDl~----------------------------------s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~ 704 (834)
+.|++||+. +++.+..+.+...+.+++|+ +.++++++. |+.|+
T Consensus 393 ~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~ 470 (615)
T 1pgu_A 393 DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQ 470 (615)
T ss_dssp TEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEE
T ss_pred CCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEE
Confidence 666666554 34445555566778888888 789999999 99999
Q ss_pred EEECCCCeEE-EEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec-CCCceEEEEEeC------
Q 003279 705 ILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHP------ 775 (834)
Q Consensus 705 iwDl~t~~~~-~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-~~~~I~svafsp------ 775 (834)
+||+.++... ..+..|...|++++|+|++++|++++ |+.|++||+.++ +.+..+.. |...|.+++|+|
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~h~~~v~~~~~sp~~~~~~ 547 (615)
T 1pgu_A 471 VFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR---EVKTSRWAFRTSKINAISWKPAEKGAN 547 (615)
T ss_dssp EEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEECCSCCCSSCEEEEEECCCC----
T ss_pred EEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC---cceeEeecCCCCceeEEEEcCcccccc
Confidence 9999988665 66778999999999999999999999 999999999987 67777777 899999999999
Q ss_pred ----CCCEEEEEEcCCeEEEEECCCC-eEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 776 ----TFPSLLVIGCYETLELWNMTEN-KTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 776 ----dg~~L~sgs~dg~I~Iwdl~~~-~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++.+|++++.|+.|++||+.++ +.+ .+.+|...|++++|+|++. |++++.||.|+|||
T Consensus 548 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 548 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 611 (615)
T ss_dssp --CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred ccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEe
Confidence 9999999999999999999987 444 6778999999999999999 99999999999996
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=322.91 Aligned_cols=284 Identities=19% Similarity=0.335 Sum_probs=241.8
Q ss_pred CCceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeE
Q 003279 477 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 556 (834)
Q Consensus 477 ~~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~ 556 (834)
....++.|++++ .++++|+.|+.|++|..... .....+.+|...|.
T Consensus 67 ~~V~~~~~sp~~---------------~~l~s~s~D~~v~iWd~~~~-------------------~~~~~~~~h~~~v~ 112 (380)
T 3iz6_a 67 GKVYSLDWTPEK---------------NWIVSASQDGRLIVWNALTS-------------------QKTHAIKLHCPWVM 112 (380)
T ss_dssp SCEEEEEECTTS---------------SCEEEEETTSEEEEEETTTT-------------------EEEEEEECCCTTCC
T ss_pred cEEEEEEEcCCC---------------CEEEEEeCCCeEEEEECCCC-------------------ccceEEecCCCCEE
Confidence 356667777655 68999999999999965332 23567789999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCe-------EEEEeccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCCCc
Q 003279 557 SCHFSPDGKLLATGGHDKKAVLWCTESFT-------VKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY 628 (834)
Q Consensus 557 sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~-------~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~s~~~ 628 (834)
+++|+|+|++||+|+.|+.|+|||+.+.. ....+.+|.+.|.++.|.|+ +..|++|+.|++|++||+.++..
T Consensus 113 ~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~ 192 (380)
T 3iz6_a 113 ECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR 192 (380)
T ss_dssp CCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE
T ss_pred EEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE
Confidence 99999999999999999999999987532 34567899999999999996 45799999999999999998764
Q ss_pred eeeee-----ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC-CCceeeEee-cCCCeeEEEEecCCCEEEEEEcCC
Q 003279 629 SLRTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFK-CQSGATQMRFQPRLGRILAAAIEN 701 (834)
Q Consensus 629 ~i~~~-----~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~-s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg 701 (834)
+..+ .+|...|.+++|++.+..+|++|+.|+.|++||++ .+..+..+. +...|.+++|+|++.+|++++.|+
T Consensus 193 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~ 271 (380)
T 3iz6_a 193 -ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDG 271 (380)
T ss_dssp -EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSS
T ss_pred -EEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCC
Confidence 4444 67999999999988656788899999999999998 446666665 467799999999999999999999
Q ss_pred eEEEEECCCCeEEEEEeCCCC-------CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe----ecCCCceE
Q 003279 702 YISILDVETQVCRLKLQGHKN-------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL----SCTGNKFH 769 (834)
Q Consensus 702 ~I~iwDl~t~~~~~~l~~h~~-------~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~----~~~~~~I~ 769 (834)
.|++||++++..+..+..+.. .|++++|+|+|.+|++++ |+.|++||+..+ +.+..+ ..|...|.
T Consensus 272 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~---~~~~~~~~~~~~h~~~v~ 348 (380)
T 3iz6_a 272 TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA---EMVLNLGTLQNSHEGRIS 348 (380)
T ss_dssp CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC---CEEEEECCSCSSCCCCCC
T ss_pred eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC---ceEEEEecccCCCCCceE
Confidence 999999999998888765432 489999999999999999 999999999887 455444 57889999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 003279 770 SCVFHPTFPSLLVIGCYETLELWNMTENK 798 (834)
Q Consensus 770 svafspdg~~L~sgs~dg~I~Iwdl~~~~ 798 (834)
+++|+|++.+|++++.|+.|+||++...+
T Consensus 349 ~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 349 CLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 99999999999999999999999998654
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=330.62 Aligned_cols=303 Identities=17% Similarity=0.290 Sum_probs=263.0
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCC-eEEEEEcC--CCCEEEEEeCCCcEEEEe
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK-VESCHFSP--DGKLLATGGHDKKAVLWC 580 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~-V~sl~fSp--dg~~Lasgs~Dg~I~IWd 580 (834)
+++++++ ++.+.+|...+... .......+.+|.+. |++++|+| ++++||+|+.||.|+|||
T Consensus 31 ~~l~~~~-~~~v~v~~~~~~~~---------------~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 31 NAIAYPC-GKSAFVRCLDDGDS---------------KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp TEEEEEE-TTEEEEEECCSSCC---------------SSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred CEEEEec-CCeEEEEECCCCCC---------------ccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence 6777777 78899996543210 01235678899999 99999999 999999999999999999
Q ss_pred CCCC--------eEEEEeccCCCCeEEEEECCCCCEEEEEeCC----CeEEEEecCCCCceeeeeccCCCCeEEEEEccC
Q 003279 581 TESF--------TVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 648 (834)
Q Consensus 581 ~~t~--------~~~~~l~~h~~~I~~l~fspdg~~Latgs~D----g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspd 648 (834)
+.++ +.+..+..|...|.+++|+|++++|++++.+ +.|++||.. . .+..+.+|...|.+++|+|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~--~-~~~~~~~~~~~v~~~~~~~~ 171 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG--N-SLGEVSGHSQRINACHLKQS 171 (615)
T ss_dssp EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC--C-EEEECCSCSSCEEEEEECSS
T ss_pred CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC--C-cceeeecCCccEEEEEECCC
Confidence 9754 6778888999999999999999999999988 789999833 3 57788899999999999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCceeeEeec-CC---CeeEEEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEE-e---C
Q 003279 649 KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QS---GATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKL-Q---G 719 (834)
Q Consensus 649 g~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~---~i~~l~~sp~-g~~ll~~s~dg~I~iwDl~t~~~~~~l-~---~ 719 (834)
+..++++++.|+.|++||+.+++.+..+.. .. .+.+++|+|+ +.++++++.|+.|++||+++++.+..+ . .
T Consensus 172 ~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 251 (615)
T 1pgu_A 172 RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEP 251 (615)
T ss_dssp SSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBC
T ss_pred CCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccc
Confidence 887888999999999999999999888874 44 6999999999 999999999999999999999999998 6 8
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC----CCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 720 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT----GNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 720 h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~----~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
|...|.+++|+ ++.+|++++ |+.|++||++++ ..+..+..+ ...+.++.|. ++.++++++.++.|++||+
T Consensus 252 ~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~ 326 (615)
T 1pgu_A 252 VQGGIFALSWL-DSQKFATVGADATIRVWDVTTS---KCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYEL 326 (615)
T ss_dssp CCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT---EEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEET
T ss_pred cCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC---cEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEEC
Confidence 99999999999 999999999 999999999987 667776665 3667888886 8899999999999999999
Q ss_pred CCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 795 TENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 795 ~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.+++.+ .+..|...|.+++| |+ |++++.||.|++||
T Consensus 327 ~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~ 363 (615)
T 1pgu_A 327 GHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWS 363 (615)
T ss_dssp TEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETT
T ss_pred CCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEE
Confidence 987776 67788888999988 77 77777888888875
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-33 Score=300.01 Aligned_cols=278 Identities=15% Similarity=0.251 Sum_probs=242.6
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
..++++|+.|++|++|....... ........+.+|...|.+++|+|++++|++|+.|+.|++|+..
T Consensus 51 ~~~l~S~s~D~~i~vWd~~~~~~--------------~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~ 116 (340)
T 4aow_A 51 PDMILSASRDKTIIMWKLTRDET--------------NYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT 116 (340)
T ss_dssp TTEEEEEETTSCEEEEEECCSSS--------------CSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEcCCCeEEEEECCCCCc--------------ccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeec
Confidence 36899999999999997654321 1223467789999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCC-cEEEEEeCCCc
Q 003279 583 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSE 661 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~-~llasgs~Dg~ 661 (834)
..........+...+..+.+++++.+|++++.|+.+++||+...........+|...|.+++|++++. .++++++.|+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~ 196 (340)
T 4aow_A 117 TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL 196 (340)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSC
T ss_pred ccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCE
Confidence 99999998899999999999999999999999999999999876665666778999999999998754 46788999999
Q ss_pred EEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 003279 662 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs 740 (834)
|++||+++++++..+.. ...|.+++|+|++.+|++++.|+.|++||+++.+.+..+.. ...|.+++|+|++.+++++.
T Consensus 197 i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~ 275 (340)
T 4aow_A 197 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAAT 275 (340)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEEEEEE
T ss_pred EEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCceeeccC
Confidence 99999999998888764 56799999999999999999999999999999999988884 46899999999999888888
Q ss_pred CCeEEEEEcCCCCCceeEEE---------eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 003279 741 DELVRVWSIGSGSKGECIHE---------LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 798 (834)
Q Consensus 741 Dg~I~IwDl~s~~~~~~i~~---------~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~ 798 (834)
|+.|++||+++. ..+.. ...|...|.+++|+|++++|++++.|+.|+|||+.+|+
T Consensus 276 d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 276 GPSIKIWDLEGK---IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp TTEEEEEETTTT---EEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCEEEEEECCCC---eEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 999999999876 33333 34577899999999999999999999999999999875
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=308.82 Aligned_cols=273 Identities=23% Similarity=0.414 Sum_probs=216.7
Q ss_pred eEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEe-cC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 505 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 505 ~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l-~g-H~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
++++|+.|+.|++|...... +..+..+ .+ |.+.|.+++|+|++++||+|+.|++|+|||++
T Consensus 26 ~las~~~D~~i~lw~~~~~~-----------------~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~ 88 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDD-----------------FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE 88 (330)
T ss_dssp EEEEEESSSCEEEEECSSSC-----------------CEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-
T ss_pred EEEEEcCCCEEEEEEecCCC-----------------eEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcc
Confidence 88999999999999654321 1223344 34 99999999999999999999999999999985
Q ss_pred -------CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC---ceeeeeccCCCCeEEEEEccCCCcE
Q 003279 583 -------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDL 652 (834)
Q Consensus 583 -------t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~---~~i~~~~~h~~~V~sl~fspdg~~l 652 (834)
..+.+..+.+|...|.+++|+|++++|++|+.|++|+|||+.... ..+..+.+|...|.+++|+|++. +
T Consensus 89 ~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~ 167 (330)
T 2hes_X 89 ESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-L 167 (330)
T ss_dssp ------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-E
T ss_pred cCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-E
Confidence 345677889999999999999999999999999999999995322 34667889999999999999976 7
Q ss_pred EEEEeCCCcEEEEECCCC--ceeeEee-cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCC--------eEEEEEeC
Q 003279 653 LCSCDNNSEIRYWSINNG--SCAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--------VCRLKLQG 719 (834)
Q Consensus 653 lasgs~Dg~I~lwDl~s~--~~i~~~~-~~~~i~~l~~sp~--g~~ll~~s~dg~I~iwDl~t~--------~~~~~l~~ 719 (834)
|++++.|+.|++||+.++ +++..+. +...|.+++|+|+ +..|++++.|+.|++||++.+ .+...+..
T Consensus 168 l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~ 247 (330)
T 2hes_X 168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD 247 (330)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS
T ss_pred EEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc
Confidence 779999999999999876 5666665 4567999999998 678999999999999998764 44555555
Q ss_pred -CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCC-ceEEEEEeC--CCCEEEEEEcCCeEEEEEC
Q 003279 720 -HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN-KFHSCVFHP--TFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 720 -h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~-~I~svafsp--dg~~L~sgs~dg~I~Iwdl 794 (834)
|...|.+++|++++ +|++++ |+.|+|||+.++...........|.. .|.+++|+| ++.+|++++.|+.|+|||+
T Consensus 248 ~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 248 VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 89999999999776 566666 99999999976521112223356766 899999999 6889999999999999998
Q ss_pred CC
Q 003279 795 TE 796 (834)
Q Consensus 795 ~~ 796 (834)
.+
T Consensus 327 ~~ 328 (330)
T 2hes_X 327 EK 328 (330)
T ss_dssp --
T ss_pred cc
Confidence 65
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-35 Score=331.70 Aligned_cols=283 Identities=18% Similarity=0.245 Sum_probs=224.3
Q ss_pred EEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeE--EEEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEE
Q 003279 546 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 621 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~IWd~~t~~~--~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IW 621 (834)
....+|...|+||+|+| ++++||+|+.||.|+|||+.+++. ...+.+|.+.|++|+|+| ++.+|++|+.||+|+||
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 34567899999999999 567999999999999999987654 345568999999999998 68999999999999999
Q ss_pred ecCCCCceeeee--ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCC-EEEEEE
Q 003279 622 DTENPDYSLRTF--TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG-RILAAA 698 (834)
Q Consensus 622 Dl~s~~~~i~~~--~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~-~ll~~s 698 (834)
|+++... .... ..+...+.+++|+|++. +|++|+.||.|++||++.........+...|.+++|+|++. .|++++
T Consensus 193 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s 270 (435)
T 4e54_B 193 DFKGNIL-RVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATAS 270 (435)
T ss_dssp ETTSCEE-EEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEE
T ss_pred eccCCce-eEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEec
Confidence 9986432 2222 22345688999999976 77799999999999998544333333567899999999876 677888
Q ss_pred cCCeEEEEECCCCeEEE---EEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCC------ce
Q 003279 699 IENYISILDVETQVCRL---KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN------KF 768 (834)
Q Consensus 699 ~dg~I~iwDl~t~~~~~---~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~------~I 768 (834)
.|+.|++||+++.+... ...+|...|++++|+|+|.+|++++ |+.|+|||+.++ .+...+..|.. .+
T Consensus 271 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~ 347 (435)
T 4e54_B 271 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW---DCPLGLIPHPHRHFQHLTP 347 (435)
T ss_dssp TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS---SSEEEECCCCCCCCSSSCC
T ss_pred CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC---ccceEEeccccccccccee
Confidence 99999999998765332 3356999999999999999999999 999999999987 34444333321 23
Q ss_pred EEEEEeCCCCEEEEEEc------------CCeEEEEECCCCeEE-Ee-ccCCCCeEEE-EEeCCCCEEEEEecCCcEEEe
Q 003279 769 HSCVFHPTFPSLLVIGC------------YETLELWNMTENKTL-TL-SAHDKLVSSL-AASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 769 ~svafspdg~~L~sgs~------------dg~I~Iwdl~~~~~~-~l-~~h~~~V~~l-afspdg~~LaSgs~DG~I~IW 833 (834)
..+.|+|++..++++.. ++.|++||..+++.+ .+ .+|...|.++ +|+|+|.+||+|+ |+.|+||
T Consensus 348 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW 426 (435)
T 4e54_B 348 IKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIW 426 (435)
T ss_dssp CBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEEC
T ss_pred EEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEE
Confidence 44567777776666642 247999999999887 33 4788888887 6999999999876 7899999
Q ss_pred C
Q 003279 834 K 834 (834)
Q Consensus 834 d 834 (834)
|
T Consensus 427 ~ 427 (435)
T 4e54_B 427 S 427 (435)
T ss_dssp C
T ss_pred E
Confidence 7
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-34 Score=310.05 Aligned_cols=288 Identities=17% Similarity=0.264 Sum_probs=243.5
Q ss_pred eeeEEEEecCCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEeCCC-CeEE-EEeccCCCCeEEEEECCCCCEEEEEeCC
Q 003279 541 TFTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSAD 615 (834)
Q Consensus 541 ~~~~~~~l~gH~~~V~sl~fSpd---g~~Lasgs~Dg~I~IWd~~t-~~~~-~~l~~h~~~I~~l~fspdg~~Latgs~D 615 (834)
.+..+..+.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|...|++++|+|++++|++++.|
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence 34457788999999999999999 69999999999999999997 5554 7888999999999999999999999999
Q ss_pred CeEEEEecCCCCceeeeeccCCCCeEEEEE--ccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCE
Q 003279 616 RTVRVWDTENPDYSLRTFTGHSTTVMSLDF--HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 693 (834)
Q Consensus 616 g~I~IWDl~s~~~~i~~~~~h~~~V~sl~f--spdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ 693 (834)
|.|++||+.++. ...+..|...|.+++| ++++. +|++++.||.|++||+++++.+..+..+..+.++.+.+ ..
T Consensus 108 g~v~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~ 182 (368)
T 3mmy_A 108 KTAKMWDLSSNQ--AIQIAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY--PM 182 (368)
T ss_dssp SEEEEEETTTTE--EEEEEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET--TE
T ss_pred CcEEEEEcCCCC--ceeeccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC--Ce
Confidence 999999999765 3446679999999999 77754 67799999999999999999999999888777777775 58
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEe--CCCCCEEEEEEcCCCCE----EEEEe-CCeEEEEEcCCCCCceeEEEeecCCC
Q 003279 694 ILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEY----LASVS-DELVRVWSIGSGSKGECIHELSCTGN 766 (834)
Q Consensus 694 ll~~s~dg~I~iwDl~t~~~~~~l~--~h~~~I~sl~~spdg~~----Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~ 766 (834)
+++++.++.+.+||++......... .+...+.++++.++... +++++ |+.|++||++.......+..+..|..
T Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 262 (368)
T 3mmy_A 183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRS 262 (368)
T ss_dssp EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEE
T ss_pred eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeec
Confidence 9999999999999999875443332 24456677777665543 77777 99999999998754345556666654
Q ss_pred ------------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 767 ------------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 767 ------------~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
.|.+++|+|++.+|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++++|++++.|+..+.|
T Consensus 263 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 263 NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH 342 (368)
T ss_dssp C----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred ccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence 7999999999999999999999999999999887 677899999999999999999999998865443
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=319.82 Aligned_cols=279 Identities=13% Similarity=0.092 Sum_probs=228.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC-------cEEEEeCCCCeE----------EEEeccCCCCeEEEEECCCCCEEEEEe--
Q 003279 553 SKVESCHFSPDGKLLATGGHDK-------KAVLWCTESFTV----------KSTLEEHTQWITDVRFSPSLSRLATSS-- 613 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg-------~I~IWd~~t~~~----------~~~l~~h~~~I~~l~fspdg~~Latgs-- 613 (834)
-+|+|++|+||+++||+|+.|. .|+||++..... ...+..|...|.+++++ +..+++++
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence 4799999999999999997643 599999875421 23567888999999875 45666654
Q ss_pred ---------CCCeEEEEecCCCCceeee--------eccCCCCeEEEEEccCCCcEE-EEEeCCCcEEEEECCCCceeeE
Q 003279 614 ---------ADRTVRVWDTENPDYSLRT--------FTGHSTTVMSLDFHPSKEDLL-CSCDNNSEIRYWSINNGSCAGV 675 (834)
Q Consensus 614 ---------~Dg~I~IWDl~s~~~~i~~--------~~~h~~~V~sl~fspdg~~ll-asgs~Dg~I~lwDl~s~~~i~~ 675 (834)
.|+.|++|++......+.. ...+...+.+++|+|||..++ ++++.|++|++||+++++++..
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~ 172 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE 172 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence 4788999998765543322 123456789999999998764 4556799999999999999999
Q ss_pred eecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-CC----eEEEEE
Q 003279 676 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-DE----LVRVWS 748 (834)
Q Consensus 676 ~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~--l~~h~~~I~sl~~spdg~~Lasgs-Dg----~I~IwD 748 (834)
+.+...|.+++|+|++.++++++ ++.+.+|+..++..+.. ...|...|.+++|+|++.++++++ |+ .+++|+
T Consensus 173 ~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~ 251 (365)
T 4h5i_A 173 IETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKIS 251 (365)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEE
T ss_pred eCCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecc
Confidence 99989999999999999888877 55677777777765543 345888999999999999999988 65 688899
Q ss_pred cCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-E-eccCCCCeEEEEEeCCCCEEEEEe
Q 003279 749 IGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-T-LSAHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 749 l~s~~~-~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~-l~~h~~~V~~lafspdg~~LaSgs 825 (834)
+..... ......+..|...|++++|+|+|++|++++.|+.|+|||+.+++++ . +.+|...|++|+|+|||++||+|+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S 331 (365)
T 4h5i_A 252 IKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS 331 (365)
T ss_dssp EETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE
T ss_pred cccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe
Confidence 876532 1234567788899999999999999999999999999999999987 3 368999999999999999999999
Q ss_pred cCCcEEEeC
Q 003279 826 HDKCVKIWK 834 (834)
Q Consensus 826 ~DG~I~IWd 834 (834)
.|++|+|||
T Consensus 332 ~D~tvrvw~ 340 (365)
T 4h5i_A 332 AANTIHIIK 340 (365)
T ss_dssp TTSEEEEEE
T ss_pred CCCeEEEEE
Confidence 999999996
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=311.42 Aligned_cols=277 Identities=14% Similarity=0.143 Sum_probs=242.3
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe---EEEEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEE
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRV 620 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~---~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~I 620 (834)
+....+|.+.|++++|+|++++|++++.|+.|+|||+.+++ ....+..|...|.+++|+|++. +|++++.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 45567899999999999999999999999999999998876 3455568999999999999999 9999999999999
Q ss_pred Eec-CCCCceeeeecc--CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC---------CceeeEeecCCCeeEEEEe
Q 003279 621 WDT-ENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVFKCQSGATQMRFQ 688 (834)
Q Consensus 621 WDl-~s~~~~i~~~~~--h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s---------~~~i~~~~~~~~i~~l~~s 688 (834)
||+ .++. ...+.+ |...|.+++|+| +. ++++++.|+.|++||+++ ++++..+.+...+.+++|+
T Consensus 84 wd~~~~~~--~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (342)
T 1yfq_A 84 VDLIGSPS--FQALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN 159 (342)
T ss_dssp ECSSSSSS--EEECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred EEeccCCc--eEeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEec
Confidence 999 7654 477778 999999999999 44 777999999999999998 7777777788889999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCC-Ce--EEEEEeCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCC---CceeEEE
Q 003279 689 PRLGRILAAAIENYISILDVET-QV--CRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGS---KGECIHE 760 (834)
Q Consensus 689 p~g~~ll~~s~dg~I~iwDl~t-~~--~~~~l~~h~~~I~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s~~---~~~~i~~ 760 (834)
+++ +++++.++.|++||+++ +. .......|...|.+++|+| ++.+|++++ |+.|++|+++... ....+..
T Consensus 160 ~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 237 (342)
T 1yfq_A 160 SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred CCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence 886 99999999999999998 43 3445556888999999999 999999999 9999999998751 0134555
Q ss_pred eecCCC---------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccC-CCCeEEEEEeCCCCEEEEEecCCc
Q 003279 761 LSCTGN---------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASASHDKC 829 (834)
Q Consensus 761 ~~~~~~---------~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h-~~~V~~lafspdg~~LaSgs~DG~ 829 (834)
+..|.. .|.+++|+|++.+|++++.|+.|++||+.+++.+ .+..| ...|.+++ |++++|++|+.||.
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred eecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 666644 9999999999999999999999999999999877 66677 99999999 99999999999998
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=303.67 Aligned_cols=251 Identities=19% Similarity=0.292 Sum_probs=213.1
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC--CeEEEEeccCCCCeEEEEECCC--CCEEEEEeCCCeEEE
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV 620 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t--~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~I 620 (834)
+..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+ .+.+.++.+|.+.|++++|+++ +.+|++|+.|++|+|
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 346789999999999999999999999999999999974 4677899999999999999864 899999999999999
Q ss_pred EecCCCC-ceeeeeccCCCCeEEEEEccCC-CcEEEEEeCCCcEEEEECCCCce--eeEe-ecCCCeeEEEEecC-----
Q 003279 621 WDTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSC--AGVF-KCQSGATQMRFQPR----- 690 (834)
Q Consensus 621 WDl~s~~-~~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~lwDl~s~~~--i~~~-~~~~~i~~l~~sp~----- 690 (834)
||+.++. ..+..+.+|...|.+++|+|+. ..+|++++.|+.|++||++++.. ...+ .+...+.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9998764 2356677899999999999972 34788999999999999987632 2223 35667999999997
Q ss_pred --------CCEEEEEEcCCeEEEEECCCCe----EEEEEeCCCCCEEEEEEcCCC---CEEEEEe-CCeEEEEEcCCCCC
Q 003279 691 --------LGRILAAAIENYISILDVETQV----CRLKLQGHKNQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSK 754 (834)
Q Consensus 691 --------g~~ll~~s~dg~I~iwDl~t~~----~~~~l~~h~~~I~sl~~spdg---~~Lasgs-Dg~I~IwDl~s~~~ 754 (834)
+.+|++++.|+.|++||++++. ....+.+|...|.+++|+|++ .+|++++ |++|+|||+++...
T Consensus 162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~ 241 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG 241 (297)
T ss_dssp --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC
Confidence 4689999999999999998764 667888999999999999985 7899998 99999999987532
Q ss_pred ceeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 755 GECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 755 ~~~i~~~--~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
......+ ..+...|.+++|+|++++|++++.|+.|+||+..
T Consensus 242 ~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 1122233 4567889999999999999999999999999976
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-34 Score=321.81 Aligned_cols=278 Identities=18% Similarity=0.332 Sum_probs=231.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-----------EEEEeccCC------------CCeEEEEECCCC
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHT------------QWITDVRFSPSL 606 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~-----------~~~~l~~h~------------~~I~~l~fspdg 606 (834)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 367899999999999999999999999999999876 578888998 889999999998
Q ss_pred --CEEEEEeCCCeEEEEecCCCCce--------------------------------------e-eeeccCCCCeEEEEE
Q 003279 607 --SRLATSSADRTVRVWDTENPDYS--------------------------------------L-RTFTGHSTTVMSLDF 645 (834)
Q Consensus 607 --~~Latgs~Dg~I~IWDl~s~~~~--------------------------------------i-~~~~~h~~~V~sl~f 645 (834)
.+|++++.|++|++||+.+.... . ....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998753221 1 123679999999999
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCC-CceeeEe--------ecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeE--
Q 003279 646 HPSKEDLLCSCDNNSEIRYWSINN-GSCAGVF--------KCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVC-- 713 (834)
Q Consensus 646 spdg~~llasgs~Dg~I~lwDl~s-~~~i~~~--------~~~~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~~~-- 713 (834)
+|++. +|++| .|+.|++||+++ +..+..+ .+...|.+++|+|++ ..|++++.|+.|++||++++..
T Consensus 186 ~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 186 NSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp CTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred cCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99977 56577 799999999994 4454433 345679999999998 8999999999999999999876
Q ss_pred --EEEEeCCCC------------CEEEEEEcCCCCEEEEEeCCeEEEEEcCC-CCCceeEEEeecCCCc-----------
Q 003279 714 --RLKLQGHKN------------QVHSVCWNTSGEYLASVSDELVRVWSIGS-GSKGECIHELSCTGNK----------- 767 (834)
Q Consensus 714 --~~~l~~h~~------------~I~sl~~spdg~~LasgsDg~I~IwDl~s-~~~~~~i~~~~~~~~~----------- 767 (834)
+..+..|.. .|.+++|+|++.+|++++++.|+|||+++ + .++..+..|...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~---~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMEN---RPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCS---SCSCCEESCGGGTTTHHHHHHTS
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCc---cccceeecccccccccccccccc
Confidence 678888876 89999999999999999899999999987 4 455555555421
Q ss_pred ----eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccC---------------------------------CCCeE
Q 003279 768 ----FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH---------------------------------DKLVS 810 (834)
Q Consensus 768 ----I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h---------------------------------~~~V~ 810 (834)
+..++|+|++.+|++++.|+.|++||+.+++.+.+..| ...|.
T Consensus 341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 420 (447)
T 3dw8_B 341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL 420 (447)
T ss_dssp GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence 33489999999999999999999999999988765433 45688
Q ss_pred EEEEeCCCCEEEEEecCCcEEEe
Q 003279 811 SLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 811 ~lafspdg~~LaSgs~DG~I~IW 833 (834)
+++|+|++.+||+++.++ ++||
T Consensus 421 ~~~~~p~~~~la~~~~~~-~~~~ 442 (447)
T 3dw8_B 421 HTAWHPKENIIAVATTNN-LYIF 442 (447)
T ss_dssp EEEECSSSSEEEEECSSC-EEEE
T ss_pred EEEECCCCCEEEEEecce-eeee
Confidence 999999999999998887 6666
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-34 Score=306.85 Aligned_cols=285 Identities=18% Similarity=0.217 Sum_probs=219.3
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----eEEEEeccCCCCeEEEEECC--CCCEEEEEeCCCeEE
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVR 619 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~----~~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~ 619 (834)
..+.+|.+.|++++|+|++++||+|+.||.|+|||+.++ +....+.+|...|++++|+| ++.+|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 456799999999999999999999999999999999876 56778889999999999999 699999999999999
Q ss_pred EEecCCCC--------ceeeeeccCCCCeEEEEEccC--CCcEEEEEeCCCcEEEEECCCCceeeEee------------
Q 003279 620 VWDTENPD--------YSLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK------------ 677 (834)
Q Consensus 620 IWDl~s~~--------~~i~~~~~h~~~V~sl~fspd--g~~llasgs~Dg~I~lwDl~s~~~i~~~~------------ 677 (834)
+||+.++. ..+..+..|...|.+++|+|+ +. ++++++.||.|++||+++++.+..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99998754 346778889999999999998 55 67789999999999999887654432
Q ss_pred --cCCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCCeE--EEEEeCCCCCEEEEEEcCCC----CEEEEEe-CCeEE
Q 003279 678 --CQSGATQMRFQPR---LGRILAAAIENYISILDVETQVC--RLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVR 745 (834)
Q Consensus 678 --~~~~i~~l~~sp~---g~~ll~~s~dg~I~iwDl~t~~~--~~~l~~h~~~I~sl~~spdg----~~Lasgs-Dg~I~ 745 (834)
+...+.+++|+|+ +..+++++.++.+.+|+...+.. +..+.+|...|++++|+|++ .+|++++ |+.|+
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 3456899999997 89999999999998888887754 77788899999999999998 7899988 99999
Q ss_pred EEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc----CCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCE
Q 003279 746 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC----YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGM 820 (834)
Q Consensus 746 IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~----dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~ 820 (834)
+||++.+. ...........+....+.+....+..+.. ...+.+|+....+.+ .+.+|...|++++|+|++++
T Consensus 244 iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 320 (351)
T 3f3f_A 244 IFKITEKL---SPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI 320 (351)
T ss_dssp EEEEEECC------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred EEeCCCCc---CccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence 99998763 22222222333333344444433333332 335556655555555 67789999999999999999
Q ss_pred EEEEecCCcEEEeC
Q 003279 821 VASASHDKCVKIWK 834 (834)
Q Consensus 821 LaSgs~DG~I~IWd 834 (834)
|++|+.||.|+|||
T Consensus 321 l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 321 LSSAGDDGKVRLWK 334 (351)
T ss_dssp EEEEETTSCEEEEE
T ss_pred EEEecCCCcEEEEe
Confidence 99999999999996
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=312.98 Aligned_cols=278 Identities=19% Similarity=0.350 Sum_probs=240.7
Q ss_pred EecCCCCCeE--EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-CCCCeEEEEECCCCCEEEEEeCCCeEEEEec
Q 003279 547 LIPASTSKVE--SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDT 623 (834)
Q Consensus 547 ~l~gH~~~V~--sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 623 (834)
...+|...+. +++|+ +..+++++.|+.|+|||+.+++....+.. |...|++++|+|++.+|++|+.||.|++||+
T Consensus 86 ~~~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp ECTTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eCCCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 3456766654 45555 45688888999999999999998877765 8899999999999999999999999999999
Q ss_pred CCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC-CCceeeEee-cCCCeeEEEEecCCCEEEEEEcCC
Q 003279 624 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFK-CQSGATQMRFQPRLGRILAAAIEN 701 (834)
Q Consensus 624 ~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~-s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg 701 (834)
.++. .+..+.+|...|.+++|++ .++++++.||.|++||++ ....+..+. +...|.+++|+|++.+|++++.|+
T Consensus 164 ~~~~-~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 239 (401)
T 4aez_A 164 ESQT-KLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDN 239 (401)
T ss_dssp TTCC-EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cCCe-EEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 9866 4778889999999999953 488899999999999998 455555554 567899999999999999999999
Q ss_pred eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCC-CEEEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003279 702 YISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 777 (834)
Q Consensus 702 ~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg-~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg 777 (834)
.|++||++++..+..+..|...|.+++|+|++ .++++++ |+.|++||+.++ .++..+. +...|.+++|+|++
T Consensus 240 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~---~~~~~~~-~~~~v~~~~~s~~~ 315 (401)
T 4aez_A 240 VVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG---ARVNTVD-AGSQVTSLIWSPHS 315 (401)
T ss_dssp CEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC---CEEEEEE-CSSCEEEEEECSSS
T ss_pred eEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC---CEEEEEe-CCCcEEEEEECCCC
Confidence 99999999999999999999999999999976 5666654 899999999987 5566654 56789999999999
Q ss_pred CEEEEEE--cCCeEEEEECCCCeEE---EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 778 PSLLVIG--CYETLELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 778 ~~L~sgs--~dg~I~Iwdl~~~~~~---~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.+|++++ .|+.|++||+.+++.. .+.+|...|.+++|+|++.+|++++.||.|+|||
T Consensus 316 ~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~ 377 (401)
T 4aez_A 316 KEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377 (401)
T ss_dssp SEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred CeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 9999965 7999999999987655 4668999999999999999999999999999996
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=309.43 Aligned_cols=289 Identities=19% Similarity=0.360 Sum_probs=237.9
Q ss_pred EEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEe-------------ccCCCCeEEEEECC-CCCE
Q 003279 544 EFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTL-------------EEHTQWITDVRFSP-SLSR 608 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~IWd~~t~~~~~~l-------------~~h~~~I~~l~fsp-dg~~ 608 (834)
....+.+|.+.|++++|+| ++++||+|+.||.|+|||+.++.....+ .+|...|.+++|+| ++.+
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 3567789999999999999 9999999999999999999987654333 25999999999999 7889
Q ss_pred EEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCC--cEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEE
Q 003279 609 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQM 685 (834)
Q Consensus 609 Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~--~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l 685 (834)
|++++.|+.|++||+.++.. ...+. +...+.++.|++.+. .++++++.|+.|++||+++++.+..+. +...+.++
T Consensus 115 l~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~ 192 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTLQT-ADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAV 192 (408)
T ss_dssp EEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEE
T ss_pred EEEEeCCCeEEEeeCCCCcc-ceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEE
Confidence 99999999999999997653 44443 778899999998643 378899999999999999998888877 46779999
Q ss_pred EEecCCC-EEEEEEcCCeEEEEECCCCe-EEEEE---------------eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEE
Q 003279 686 RFQPRLG-RILAAAIENYISILDVETQV-CRLKL---------------QGHKNQVHSVCWNTSGEYLASVS-DELVRVW 747 (834)
Q Consensus 686 ~~sp~g~-~ll~~s~dg~I~iwDl~t~~-~~~~l---------------~~h~~~I~sl~~spdg~~Lasgs-Dg~I~Iw 747 (834)
+|+|++. .+++++.|+.|++||++++. ++..+ ..|...|.+++|+|++.+|++++ |+.|++|
T Consensus 193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 272 (408)
T 4a11_B 193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272 (408)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence 9999988 48899999999999998764 44444 46888999999999999999998 9999999
Q ss_pred EcCCCCCceeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEE
Q 003279 748 SIGSGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 824 (834)
Q Consensus 748 Dl~s~~~~~~i~~~--~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSg 824 (834)
|+.++......... ......+........+..+++++.++.|++||+.+++.+ .+.+|...|++++|+|++++|+++
T Consensus 273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 352 (408)
T 4a11_B 273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSG 352 (408)
T ss_dssp ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEE
Confidence 99987432211110 111122222233344566888889999999999999887 677899999999999999999999
Q ss_pred ecCCcEEEeC
Q 003279 825 SHDKCVKIWK 834 (834)
Q Consensus 825 s~DG~I~IWd 834 (834)
+.||.|+|||
T Consensus 353 ~~dg~i~iw~ 362 (408)
T 4a11_B 353 SRDCNILAWV 362 (408)
T ss_dssp ETTSCEEEEE
T ss_pred CCCCeEEEEe
Confidence 9999999996
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=321.05 Aligned_cols=274 Identities=16% Similarity=0.206 Sum_probs=235.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeee
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 633 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~ 633 (834)
.+++++|+|++++|++|+.|+.|++||+.+++....+..| ..+....|++++++|++++.|+.|++||+.++. ....+
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~ 135 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-QREID 135 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-EEEET
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-eeeec
Confidence 3458999999999999999999999999988777666666 455666889999999999999999999998754 46667
Q ss_pred ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003279 634 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQV 712 (834)
Q Consensus 634 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~ 712 (834)
.+|...|.+++|+|++. +|++++.|+.|++||+++++.+..+. +...|.+++|+|++..|++++.|+.|++||+++++
T Consensus 136 ~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp TSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred ccccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence 89999999999999976 77799999999999999999888887 46779999999999999999999999999999999
Q ss_pred EEEEEeC---CCCCEEEEE---------------------EcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe-ecCCC
Q 003279 713 CRLKLQG---HKNQVHSVC---------------------WNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGN 766 (834)
Q Consensus 713 ~~~~l~~---h~~~I~sl~---------------------~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~-~~~~~ 766 (834)
.+..+.. |...|.+++ |+|++.+|++++ |+.|++||++++ ..+..+ ..|..
T Consensus 215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~ 291 (420)
T 3vl1_A 215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK---EQTIQLPSKFTC 291 (420)
T ss_dssp EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC---CEEEEECCTTSS
T ss_pred eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC---ceeEEcccccCC
Confidence 9988875 444555554 578899999999 999999999987 444444 45788
Q ss_pred ceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCeE--EEecc-CCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 767 KFHSCVFHPTFP-SLLVIGCYETLELWNMTENKT--LTLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 767 ~I~svafspdg~-~L~sgs~dg~I~Iwdl~~~~~--~~l~~-h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.|.+++|+|++. +|++++.|+.|++||+.+++. ..+.. |...|.++.| +++++|++++.||.|+|||
T Consensus 292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEE
T ss_pred CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEe
Confidence 999999999999 999999999999999998753 24554 7778888865 5788999999999999996
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=331.72 Aligned_cols=275 Identities=16% Similarity=0.270 Sum_probs=234.9
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
..++++|+.|+.|++|........ .......+.+|...|.+++|+|++++|++|+.|++|+|||+.
T Consensus 395 ~~~l~s~s~D~~i~~W~~~~~~~~--------------~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~ 460 (694)
T 3dm0_A 395 ADIIVSASRDKSIILWKLTKDDKA--------------YGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA 460 (694)
T ss_dssp CSEEEEEETTSEEEEEECCCSTTC--------------SCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEeCCCcEEEEEccCCCcc--------------cccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 368999999999999976543211 112346788999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeee---eccCCCCeEEEEEccCCC-cEEEEEeC
Q 003279 583 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDFHPSKE-DLLCSCDN 658 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~---~~~h~~~V~sl~fspdg~-~llasgs~ 658 (834)
+++.+..+.+|...|.+++|+|++++|++|+.|++|+|||+..... ... ..+|...|.+++|+|++. .++++++.
T Consensus 461 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 539 (694)
T 3dm0_A 461 AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK-YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW 539 (694)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-EEECSSTTSCSSCEEEEEECSCSSSCEEEEEET
T ss_pred CCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc-eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC
Confidence 9999999999999999999999999999999999999999865322 221 246889999999999863 57889999
Q ss_pred CCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEE
Q 003279 659 NSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 737 (834)
Q Consensus 659 Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~La 737 (834)
|+.|++||++++++...+. |...|.+++|+|++.+|++++.|+.|++||+++++++..+. +...|.+++|+|++.+|+
T Consensus 540 d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~ 618 (694)
T 3dm0_A 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLC 618 (694)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEE
T ss_pred CCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEE
Confidence 9999999999999888776 45679999999999999999999999999999999888876 456899999999999999
Q ss_pred EEeCCeEEEEEcCCCCCceeEEEeecC-------------------CCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 738 SVSDELVRVWSIGSGSKGECIHELSCT-------------------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 738 sgsDg~I~IwDl~s~~~~~~i~~~~~~-------------------~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
++.++.|+|||++++ ..+..+..+ ...+.+++|+|++.+|++++.||.|+|||+..
T Consensus 619 ~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 619 AATEHGIKIWDLESK---SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEETTEEEEEETTTT---EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEcCCCEEEEECCCC---CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 988999999999987 444444321 12378899999999999999999999999853
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=340.97 Aligned_cols=286 Identities=17% Similarity=0.305 Sum_probs=255.5
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
...+.+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++.+..+.+|...|++++|+|++++|++++.||.|++||
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC-ceeeEee-cCCCeeEEEEec-CCCEEEEEEc
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFK-CQSGATQMRFQP-RLGRILAAAI 699 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~-~~i~~~~-~~~~i~~l~~sp-~g~~ll~~s~ 699 (834)
+.++.. +..+.+|...|.+++|+|++. +|++++.||.|++||+.++ .....+. +...+.+++|+| ++..+++++.
T Consensus 84 ~~~~~~-~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 84 YNTGEK-VVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp TTTCCE-EEEEECCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCcE-EEEEecCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 998764 778889999999999999987 5668999999999999987 5555555 456799999999 7889999999
Q ss_pred CCeEEEEECCCCeEEEEEeCCC-CCEEEEEEcC--CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003279 700 ENYISILDVETQVCRLKLQGHK-NQVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 775 (834)
Q Consensus 700 dg~I~iwDl~t~~~~~~l~~h~-~~I~sl~~sp--dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp 775 (834)
|+.|++||+.++.....+..+. ..+.+++|+| ++.+|++++ |+.|++||+.++ ..+..+..|...|.+++|+|
T Consensus 162 dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~ 238 (814)
T 3mkq_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHP 238 (814)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT---EEEEEEECCSSCEEEEEECS
T ss_pred CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcC
Confidence 9999999999887777776554 8899999999 999999999 999999999887 77888888999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCC--EEEEEecCCcEEEeC
Q 003279 776 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG--MVASASHDKCVKIWK 834 (834)
Q Consensus 776 dg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~--~LaSgs~DG~I~IWd 834 (834)
++.+|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++. ++++++ |+.+.+|+
T Consensus 239 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~ 299 (814)
T 3mkq_A 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLS 299 (814)
T ss_dssp SSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEE
Confidence 9999999999999999999998877 6778889999999999987 455555 55566663
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=309.33 Aligned_cols=270 Identities=22% Similarity=0.404 Sum_probs=233.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe--ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeee
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l--~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~ 632 (834)
++.|+||+++ +||+|. |++|+|||..+++.+..+ .+|...|++|+|+|++++|++|+.||+|+|||+.+++ .+..
T Consensus 108 ~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-~~~~ 184 (420)
T 4gga_A 108 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-RLRN 184 (420)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEE
T ss_pred ceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-EEEE
Confidence 6779999764 888776 899999999999888765 4678899999999999999999999999999999865 4788
Q ss_pred eccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-eeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003279 633 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET 710 (834)
Q Consensus 633 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~-~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t 710 (834)
+.+|...|.++++++ .++++|+.|+.+++||..... .+..+. +...+..+.+++++.++++++.|+.|++||..+
T Consensus 185 ~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~ 261 (420)
T 4gga_A 185 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261 (420)
T ss_dssp ECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence 899999999999873 488899999999999998644 344444 466799999999999999999999999999987
Q ss_pred Ce----EEEEEeCCCCCEEEEEEcCCCC-EEEEE--e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003279 711 QV----CRLKLQGHKNQVHSVCWNTSGE-YLASV--S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 711 ~~----~~~~l~~h~~~I~sl~~spdg~-~Lasg--s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~s 782 (834)
++ .+.....|...|.+++|+|++. +++++ + |++|++||+.++ .++..+.. ...+.++.|++++..+++
T Consensus 262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---~~~~~~~~-~~~v~~~~~~~~~~~lv~ 337 (420)
T 4gga_A 262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDA-HSQVCSILWSPHYKELIS 337 (420)
T ss_dssp CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT---EEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc---ccceeecc-ccceeeeeecCCCCeEEE
Confidence 64 3556777999999999999654 55543 3 899999999988 66666654 457889999999999988
Q ss_pred EE--cCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 783 IG--CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 783 gs--~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++ .|+.|+|||+.+++.+ .+.+|.+.|++++|+|||.+||||+.||+|+|||
T Consensus 338 ~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 338 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 76 5889999999999887 7889999999999999999999999999999997
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-33 Score=353.10 Aligned_cols=285 Identities=21% Similarity=0.355 Sum_probs=260.1
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 625 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s 625 (834)
..+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|+|||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceeeeeccCCCCeEEEEEccCC-CcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeE
Q 003279 626 PDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYI 703 (834)
Q Consensus 626 ~~~~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I 703 (834)
+. .+..+.+|...|.+++|+|++ ..++++++.|+.|++||+++++++..+. +...|.+++|+|++..+++++.||.|
T Consensus 689 ~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 689 GK-LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767 (1249)
T ss_dssp CC-EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred Cc-eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence 76 478888999999999999963 4578899999999999999999888776 46679999999999999999999999
Q ss_pred EEEECCCCeEEEEEeC-------------CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEee-cCCCceE
Q 003279 704 SILDVETQVCRLKLQG-------------HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-CTGNKFH 769 (834)
Q Consensus 704 ~iwDl~t~~~~~~l~~-------------h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~-~~~~~I~ 769 (834)
++||++++.....+.. +...+.+++|+|+|.++++++++.|.+||+.++ ..+..+. .|...|.
T Consensus 768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~v~ 844 (1249)
T 3sfz_A 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS---GLLAEIHTGHHSTIQ 844 (1249)
T ss_dssp EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC---CEEEEEECSSSSCCC
T ss_pred EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC---CceeEEcCCCCCceE
Confidence 9999999887766642 233688999999999999999999999999987 4444443 7889999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 770 SCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 770 svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+++|+|++.++++++.++.|++||+.++..+ .+.+|...|.+++|+|++.+|++++.||.|++||
T Consensus 845 ~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 845 YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910 (1249)
T ss_dssp EEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 9999999999999999999999999999877 6779999999999999999999999999999996
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-32 Score=291.29 Aligned_cols=270 Identities=21% Similarity=0.391 Sum_probs=229.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe--ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeee
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l--~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~ 632 (834)
+.+|+||+++ +||+|. |++|+|||+++++.+..+ .+|...|++++|+|++++|++|+.||+|++||+.+++ .+..
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-~~~~ 104 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-RLRN 104 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-eEEE
Confidence 5789999986 777765 899999999999988766 4688899999999999999999999999999999865 4788
Q ss_pred eccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce-eeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003279 633 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET 710 (834)
Q Consensus 633 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~-i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t 710 (834)
+.+|...+.++.+.+ .++++++.++.+++|+...... +..+. +...+..+.+.+++.++++++.|+.|++||+++
T Consensus 105 ~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 181 (318)
T 4ggc_A 105 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181 (318)
T ss_dssp EECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred ecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence 899999998887763 4788999999999999987643 33333 467799999999999999999999999999987
Q ss_pred Ce----EEEEEeCCCCCEEEEEEcCCCCEE-E--EEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003279 711 QV----CRLKLQGHKNQVHSVCWNTSGEYL-A--SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 711 ~~----~~~~l~~h~~~I~sl~~spdg~~L-a--sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~s 782 (834)
++ .......+...|.++++++++..+ . +++ ++.|++||.... ... ....+...+..+.|++++..+++
T Consensus 182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~---~~~-~~~~~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACL-SAVDAHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC---CEE-EEEECSSCEEEEEEETTTTEEEE
T ss_pred CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc---ccc-ccccceeeeeeeeecccccceEE
Confidence 64 345556688899999999976533 3 333 789999999876 333 33446778999999999999887
Q ss_pred EE--cCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 783 IG--CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 783 gs--~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++ .|+.|+|||+.+++.+ .+.+|.+.|++++|+|++++||||+.||+|+|||
T Consensus 258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 76 6889999999999887 7789999999999999999999999999999997
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=292.81 Aligned_cols=270 Identities=14% Similarity=0.167 Sum_probs=240.5
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
.++++|+.|+.|++|..... ..+..+.+|.+.|.+++|+|++++|++++.||.|++||+.+
T Consensus 45 ~~l~~~~~dg~i~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 105 (369)
T 3zwl_B 45 DLLFSCSKDSSASVWYSLNG-------------------ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN 105 (369)
T ss_dssp CEEEEEESSSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred CEEEEEeCCCEEEEEeCCCc-------------------hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 68999999999999965432 24567789999999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEecCCCCc----------eeeeeccCCC--CeEEEEEc
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDY----------SLRTFTGHST--TVMSLDFH 646 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D-----g~I~IWDl~s~~~----------~i~~~~~h~~--~V~sl~fs 646 (834)
++.+..+. |...|.+++|+|++.+|++++.+ +.|++||+..... ....+..|.. .|.+++|+
T Consensus 106 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (369)
T 3zwl_B 106 GQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWS 184 (369)
T ss_dssp CCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEEC
T ss_pred CcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEc
Confidence 99998887 88999999999999999999999 9999999986542 2344555665 89999999
Q ss_pred cCCCcEEEEEeCCCcEEEEECCC-CceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCE
Q 003279 647 PSKEDLLCSCDNNSEIRYWSINN-GSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV 724 (834)
Q Consensus 647 pdg~~llasgs~Dg~I~lwDl~s-~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I 724 (834)
|++. +|++++.||.|++||+++ ...+..+. +...+.+++|+|++.+|++++.|+.|++||+++++.+..+. +...+
T Consensus 185 ~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~ 262 (369)
T 3zwl_B 185 TKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPL 262 (369)
T ss_dssp GGGC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCE
T ss_pred CCCC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCc
Confidence 9977 666889999999999998 67777776 46779999999999999999999999999999999988887 78899
Q ss_pred EEEEEcCCCCEEEEEe-CC--------------eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003279 725 HSVCWNTSGEYLASVS-DE--------------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 789 (834)
Q Consensus 725 ~sl~~spdg~~Lasgs-Dg--------------~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I 789 (834)
.+++|+|++.++++++ ++ .|++||+.++ ..+..+..|...|.+++|+|++.+|++++.|+.|
T Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 339 (369)
T 3zwl_B 263 NTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE---EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFI 339 (369)
T ss_dssp EEEEECSSSSEEEEEECCC-------------CEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred eeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC---cchhheecccCcEEEEEECCCCCEEEEEcCCCeE
Confidence 9999999999999988 66 8999999988 7788888999999999999999999999999999
Q ss_pred EEEECCCCe
Q 003279 790 ELWNMTENK 798 (834)
Q Consensus 790 ~Iwdl~~~~ 798 (834)
++|++..+.
T Consensus 340 ~iw~~~~~~ 348 (369)
T 3zwl_B 340 RLHHFEKSY 348 (369)
T ss_dssp EEEEECHHH
T ss_pred EEEECcccc
Confidence 999998754
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-33 Score=308.37 Aligned_cols=276 Identities=17% Similarity=0.145 Sum_probs=241.6
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC----C---CEEEEEeCCCcE
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD----G---KLLATGGHDKKA 576 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpd----g---~~Lasgs~Dg~I 576 (834)
.++++|+.|+.|++|........ ..+..+..+.+|...|++++|+|+ + ++|++++.|+.|
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~-------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i 93 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNE-------------NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 93 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTC-------------CGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCE
T ss_pred CeEEEEcCCCEEEEEECCCcccc-------------cCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCE
Confidence 68899999999999976544211 112335667799999999999999 9 999999999999
Q ss_pred EEEeCCCCeE-----EEEeccC-----CCCeEEEEEC----CCCCE-EEEEeCCCeEEEEecCC------CCceee----
Q 003279 577 VLWCTESFTV-----KSTLEEH-----TQWITDVRFS----PSLSR-LATSSADRTVRVWDTEN------PDYSLR---- 631 (834)
Q Consensus 577 ~IWd~~t~~~-----~~~l~~h-----~~~I~~l~fs----pdg~~-Latgs~Dg~I~IWDl~s------~~~~i~---- 631 (834)
++||+.+++. +..+..| ...|.+++|+ |++.+ |++++.||.|++||+.+ ... +.
T Consensus 94 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~ 172 (397)
T 1sq9_A 94 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT-LNWSPT 172 (397)
T ss_dssp EEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT-TCCCCE
T ss_pred EEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce-eeccCc
Confidence 9999998876 8888888 5899999999 99999 99999999999999987 443 33
Q ss_pred -ee-------ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-------CCCeeEEEEecCCCEEEE
Q 003279 632 -TF-------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRLGRILA 696 (834)
Q Consensus 632 -~~-------~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-------~~~i~~l~~sp~g~~ll~ 696 (834)
.+ ..|...|.+++|+|++ ++++++.|+.|++||+++++.+..+.. ...+.+++|+|++.+|++
T Consensus 173 ~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~ 250 (397)
T 1sq9_A 173 LELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 250 (397)
T ss_dssp EEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred ceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEE
Confidence 44 4588999999999997 788999999999999999999988886 778999999999999999
Q ss_pred EEcC---CeEEEEECCCCeEEEEEeC-------------CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEE
Q 003279 697 AAIE---NYISILDVETQVCRLKLQG-------------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 759 (834)
Q Consensus 697 ~s~d---g~I~iwDl~t~~~~~~l~~-------------h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~ 759 (834)
++.| +.|++||+++++.+..+.. |...|.+++|+|++.+|++++ |+.|+|||+.++ +.+.
T Consensus 251 ~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~ 327 (397)
T 1sq9_A 251 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK---ERIT 327 (397)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEE
T ss_pred EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC---ceeE
Confidence 9999 9999999999999999998 999999999999999999999 999999999987 7777
Q ss_pred Eee------cC---------------CCceEEEEEeCCC----------CEEEEEEcCCeEEEEECCCCe
Q 003279 760 ELS------CT---------------GNKFHSCVFHPTF----------PSLLVIGCYETLELWNMTENK 798 (834)
Q Consensus 760 ~~~------~~---------------~~~I~svafspdg----------~~L~sgs~dg~I~Iwdl~~~~ 798 (834)
.+. .| ...|.+++|+|++ .+|++++.|+.|++||+.+++
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 328 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 887 77 8999999999998 799999999999999998764
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-33 Score=302.72 Aligned_cols=277 Identities=15% Similarity=0.271 Sum_probs=232.1
Q ss_pred ceEEeccC---CCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC---CCEEEEEeCCCcEE
Q 003279 504 RFVDDGSL---DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAV 577 (834)
Q Consensus 504 ~~l~~Gs~---D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpd---g~~Lasgs~Dg~I~ 577 (834)
.++++|+. |+.|++|...... .. .....+|...|.+++|+|+ +++|++|+.||.|+
T Consensus 32 ~l~~~~s~~~~d~~v~iw~~~~~~-----------------~~-~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 93 (357)
T 3i2n_A 32 KFVTMGNFARGTGVIQLYEIQHGD-----------------LK-LLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLH 93 (357)
T ss_dssp EEEEEEC--CCCEEEEEEEECSSS-----------------EE-EEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEE
T ss_pred eEEEecCccCCCcEEEEEeCCCCc-----------------cc-ceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEE
Confidence 57788887 8999999654321 01 1222378999999999998 69999999999999
Q ss_pred EEeCCCCe-EEEEeccCCCCeEEEEE------CCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCC----CeEEEE--
Q 003279 578 LWCTESFT-VKSTLEEHTQWITDVRF------SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST----TVMSLD-- 644 (834)
Q Consensus 578 IWd~~t~~-~~~~l~~h~~~I~~l~f------spdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~----~V~sl~-- 644 (834)
+||+.+++ .+..+.+|...|.+++| ++++.+|++++.|+.|++||+.++...+..+..|.. .|.+++
T Consensus 94 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (357)
T 3i2n_A 94 IWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFG 173 (357)
T ss_dssp EECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEE
T ss_pred EEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEE
Confidence 99999988 88899999999999954 688999999999999999999987655666665554 899998
Q ss_pred --EccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEec---CCCEEEEEEcCCeEEEEECCCCeEEEE---
Q 003279 645 --FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLK--- 716 (834)
Q Consensus 645 --fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp---~g~~ll~~s~dg~I~iwDl~t~~~~~~--- 716 (834)
|+|++. ++++++.|+.|++||+++++......+...+.+++|+| ++..+++++.|+.|++||+++++....
T Consensus 174 ~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 252 (357)
T 3i2n_A 174 NAYNQEER-VVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFAS 252 (357)
T ss_dssp CCCC-CCC-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEE
T ss_pred eccCCCCC-EEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceee
Confidence 677765 67789999999999999999888888889999999999 899999999999999999987654433
Q ss_pred --EeCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCc----------------eeEEEeecCCCceEEEEEeCC
Q 003279 717 --LQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKG----------------ECIHELSCTGNKFHSCVFHPT 776 (834)
Q Consensus 717 --l~~h~~~I~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~----------------~~i~~~~~~~~~I~svafspd 776 (834)
+.+|...|++++|+|++. +|++++ |+.|++||++..... ..+..+..|...|.+++|+|+
T Consensus 253 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 332 (357)
T 3i2n_A 253 VSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPD 332 (357)
T ss_dssp EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSS
T ss_pred eccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCC
Confidence 348999999999999998 788888 999999999875433 467788889999999999999
Q ss_pred CCEEE-EEEcCCeEEEEECCCCeE
Q 003279 777 FPSLL-VIGCYETLELWNMTENKT 799 (834)
Q Consensus 777 g~~L~-sgs~dg~I~Iwdl~~~~~ 799 (834)
+.+|+ +++.|+.|++||+.+.+.
T Consensus 333 ~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 333 KRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp STTEEEEEETTSEEEEEEECC---
T ss_pred CCeEEEEecCCCcEEEEECCCccc
Confidence 99998 799999999999987654
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=311.72 Aligned_cols=271 Identities=22% Similarity=0.402 Sum_probs=241.6
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 624 (834)
+....+|...|+|+.| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++| ++.+|++|+.||+|++||+.
T Consensus 126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 3445578888999887 7899999999999999999999999999999999999999 78899999999999999999
Q ss_pred CCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceee---Eee-cCCCeeEEEEecCCCEEEEEEcC
Q 003279 625 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG---VFK-CQSGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 625 s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~---~~~-~~~~i~~l~~sp~g~~ll~~s~d 700 (834)
++. .+..+.+|...|.+++|+++ ++++|+.||.|++||+.++.... .+. +...+.++.| ++.++++++.|
T Consensus 202 ~~~-~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d 275 (435)
T 1p22_A 202 TGE-MLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD 275 (435)
T ss_dssp SCC-EEEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETT
T ss_pred CCc-EEEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCC
Confidence 876 47888899999999999743 78899999999999999877652 232 4567888888 67899999999
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003279 701 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 779 (834)
Q Consensus 701 g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~ 779 (834)
+.|++||+++++.+..+.+|...|.+++|+ +.+|++++ |+.|++||++++ .++..+..|...|.+++| ++.+
T Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~--~~~~ 348 (435)
T 1p22_A 276 RTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRF--DNKR 348 (435)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEC--CSSE
T ss_pred CeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCC---CEEEEEeCCcCcEEEEEe--cCCE
Confidence 999999999999999999999999999994 67888888 999999999987 788889999999999999 7889
Q ss_pred EEEEEcCCeEEEEECCCCe---------EE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 780 LLVIGCYETLELWNMTENK---------TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 780 L~sgs~dg~I~Iwdl~~~~---------~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|++++.|+.|++||+.++. .+ .+.+|.+.|.+++| ++.+|++|+.||.|+|||
T Consensus 349 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 411 (435)
T ss_dssp EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence 9999999999999986654 33 77899999999999 688999999999999997
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=342.00 Aligned_cols=326 Identities=12% Similarity=0.034 Sum_probs=243.1
Q ss_pred ccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEE
Q 003279 499 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAV 577 (834)
Q Consensus 499 ~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpd-g~~Lasgs~Dg~I~ 577 (834)
+.....++++|+.|+.|++|...........+...+. ....+.+|.+.|++++|+|+ +.+|++|+.|+.|
T Consensus 106 ~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~--------~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v- 176 (902)
T 2oaj_A 106 TDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK--------SSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL- 176 (902)
T ss_dssp CCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHH--------HHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCccccceeccccc--------cccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-
Confidence 3445578999999999999976533110000000000 00235789999999999996 5789999999999
Q ss_pred EEeCCCCeEEEEeccC------------------CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceee-ee---cc
Q 003279 578 LWCTESFTVKSTLEEH------------------TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR-TF---TG 635 (834)
Q Consensus 578 IWd~~t~~~~~~l~~h------------------~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~-~~---~~ 635 (834)
|||+.+++.+..+..| ...|++++|+|++.+|++++.|++|++||+.+++.... .+ ..
T Consensus 177 lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~ 256 (902)
T 2oaj_A 177 TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEI 256 (902)
T ss_dssp EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCT
T ss_pred EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeeccccc
Confidence 9999999999888766 57899999999999999999999999999988654221 12 11
Q ss_pred -------------CCCCeEEEEEcc----CCCcEEEEEeCC---------------------------------------
Q 003279 636 -------------HSTTVMSLDFHP----SKEDLLCSCDNN--------------------------------------- 659 (834)
Q Consensus 636 -------------h~~~V~sl~fsp----dg~~llasgs~D--------------------------------------- 659 (834)
|...|.+++|++ ++..++++|+.|
T Consensus 257 ~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 336 (902)
T 2oaj_A 257 NVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKI 336 (902)
T ss_dssp TSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEE
T ss_pred CCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEE
Confidence 345789999953 333556665433
Q ss_pred -------------------------------------CcEEEEECCCCceeeE-------e-ecCCCee-----------
Q 003279 660 -------------------------------------SEIRYWSINNGSCAGV-------F-KCQSGAT----------- 683 (834)
Q Consensus 660 -------------------------------------g~I~lwDl~s~~~i~~-------~-~~~~~i~----------- 683 (834)
+.|++||+.++..... + .++..|+
T Consensus 337 ~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~ 416 (902)
T 2oaj_A 337 FPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKL 416 (902)
T ss_dssp ECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHH
T ss_pred EecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHH
Confidence 3344444433321110 0 0012233
Q ss_pred -----------------------EEEEecCCCEEEEEEcCCeEEEEECCCCeE----EEE--Ee-----CCCCCEEEEEE
Q 003279 684 -----------------------QMRFQPRLGRILAAAIENYISILDVETQVC----RLK--LQ-----GHKNQVHSVCW 729 (834)
Q Consensus 684 -----------------------~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~----~~~--l~-----~h~~~I~sl~~ 729 (834)
.++|+|+++.|++++.|++|++||+.++.. ... +. +|...|.+++|
T Consensus 417 w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svaf 496 (902)
T 2oaj_A 417 WLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISF 496 (902)
T ss_dssp HHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEE
T ss_pred HHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEe
Confidence 344568889999999999999999987632 111 11 78899999999
Q ss_pred cCCCCEEEEEe-CCeEEEEEcCCCCC------------------------------------------ceeEEEeecCCC
Q 003279 730 NTSGEYLASVS-DELVRVWSIGSGSK------------------------------------------GECIHELSCTGN 766 (834)
Q Consensus 730 spdg~~Lasgs-Dg~I~IwDl~s~~~------------------------------------------~~~i~~~~~~~~ 766 (834)
+||+++||+++ |++|+|||+.++.. ..++..+..|..
T Consensus 497 spdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~ 576 (902)
T 2oaj_A 497 AAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKG 576 (902)
T ss_dssp ETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSC
T ss_pred cCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCC
Confidence 99999999999 99999999986521 134677888999
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE------ec-cCCCCeEEEEEe-----CCC---CEEEEEecCCcEE
Q 003279 767 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT------LS-AHDKLVSSLAAS-----TVN---GMVASASHDKCVK 831 (834)
Q Consensus 767 ~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~------l~-~h~~~V~~lafs-----pdg---~~LaSgs~DG~I~ 831 (834)
.|++++|+|+| +|++++.|++|+|||+.+..++. +. +|...|++|+|+ ||| .+|++|+.||+|+
T Consensus 577 ~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~ 655 (902)
T 2oaj_A 577 KTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVI 655 (902)
T ss_dssp SEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEE
T ss_pred cEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEE
Confidence 99999999999 99999999999999999887652 22 789999999999 886 7999999999999
Q ss_pred EeC
Q 003279 832 IWK 834 (834)
Q Consensus 832 IWd 834 (834)
+||
T Consensus 656 ~wd 658 (902)
T 2oaj_A 656 TYK 658 (902)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-32 Score=299.33 Aligned_cols=277 Identities=17% Similarity=0.232 Sum_probs=235.2
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
.++++|+.|+.|++|..... .+..+..+.+|...|.+++|+|++++|++++.|+.|++||+++
T Consensus 21 ~~l~~~~~d~~v~i~~~~~~-----------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 21 TQIAICPNNHEVHIYEKSGN-----------------KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp SEEEEECSSSEEEEEEEETT-----------------EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred CEEEEEeCCCEEEEEeCCCC-----------------cEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 68899999999999954322 2345777889999999999999999999999999999999998
Q ss_pred CeEEEE--eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc---eeeeeccCCCCeEEEEEccCCCcEEEEEeC
Q 003279 584 FTVKST--LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 658 (834)
Q Consensus 584 ~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~---~i~~~~~h~~~V~sl~fspdg~~llasgs~ 658 (834)
++.... +..|...|.+++|+|++++|++++.|+.|++||+..... .......|...|.+++|+|++. +|++++.
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~ 162 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSC 162 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEET
T ss_pred CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEEcC
Confidence 875544 467999999999999999999999999999999987653 2344467899999999999876 6778999
Q ss_pred CCcEEEEECC------------------CCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC
Q 003279 659 NSEIRYWSIN------------------NGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 719 (834)
Q Consensus 659 Dg~I~lwDl~------------------s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~ 719 (834)
|+.|++||++ .++++..+. +...+.+++|+|++.+|++++.|+.|++||+++++++..+..
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 242 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS 242 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc
Confidence 9999999954 567777774 456799999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCC--CC-----------------------------CceeE------EEe-
Q 003279 720 HKNQVHSVCWNTSGEYLASVSDELVRVWSIGS--GS-----------------------------KGECI------HEL- 761 (834)
Q Consensus 720 h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s--~~-----------------------------~~~~i------~~~- 761 (834)
|...|.+++|+|++.+|+++.|+.|++|++.+ +. ..... ..+
T Consensus 243 ~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (372)
T 1k8k_C 243 ETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD 322 (372)
T ss_dssp SSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS
T ss_pred CCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccc
Confidence 99999999999999999988899999999987 31 00110 222
Q ss_pred ecCCCceEEEEEe-CCC---CEEEEEEcCCeEEEEECCCCe
Q 003279 762 SCTGNKFHSCVFH-PTF---PSLLVIGCYETLELWNMTENK 798 (834)
Q Consensus 762 ~~~~~~I~svafs-pdg---~~L~sgs~dg~I~Iwdl~~~~ 798 (834)
..|...|.+++|+ +++ .+|++++.|+.|++||+.+++
T Consensus 323 ~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 323 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 4788999999866 666 899999999999999987644
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-33 Score=302.67 Aligned_cols=250 Identities=20% Similarity=0.269 Sum_probs=206.2
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEeccCCCCeEEEEECC--CCCEEEEEeCCCeEEEE
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVW 621 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~--~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IW 621 (834)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++. .+..+.+|.+.|++++|++ ++.+|++|+.|++|+||
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3467999999999999999999999999999999998775 4678899999999999986 48999999999999999
Q ss_pred ecCCCC-ceeeeeccCCCCeEEEEEccCC-CcEEEEEeCCCcEEEEECCCCcee---eEe-ecCCCeeEEEEecC-----
Q 003279 622 DTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCA---GVF-KCQSGATQMRFQPR----- 690 (834)
Q Consensus 622 Dl~s~~-~~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~lwDl~s~~~i---~~~-~~~~~i~~l~~sp~----- 690 (834)
|+.++. .....+.+|...|.+++|+|++ ..+|++++.|+.|++||++.+... ..+ .+...+.+++|+|+
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence 998764 2456778899999999999983 457889999999999999876322 222 23456889999987
Q ss_pred ------------CCEEEEEEcCCeEEEEECCCC---eEEEEEeCCCCCEEEEEEcCCC----CEEEEEe-CCeEEEEEcC
Q 003279 691 ------------LGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRVWSIG 750 (834)
Q Consensus 691 ------------g~~ll~~s~dg~I~iwDl~t~---~~~~~l~~h~~~I~sl~~spdg----~~Lasgs-Dg~I~IwDl~ 750 (834)
+.+|++++.|+.|++||++.. .++..+.+|...|.+++|+|++ .+|++++ |++|+|||+.
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~ 246 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD 246 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence 368999999999999999865 5677888999999999999986 7899998 9999999998
Q ss_pred CCCCc-eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 751 SGSKG-ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 751 s~~~~-~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
+.... .....+..|...|.+++|+|++.+|++++.|+.|+||+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 247 DASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp STTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 63211 1223345678899999999999999999999999999975
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-32 Score=302.41 Aligned_cols=273 Identities=18% Similarity=0.253 Sum_probs=233.4
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~-gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
..+++++.|+.|++|...... ....+. .|...|++++|+|++++|++|+.||.|+|||+.
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~~-------------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSGS-------------------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp TSEEEEEETTEEEEEETTTCC-------------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCEEEEECCCeEEEeeCCCCc-------------------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 456778899999999664321 112222 389999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 003279 583 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 662 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 662 (834)
+++.+..+.+|...|.+++| ++.+|++++.||.|++||+......+..+.+|...|.+++|+|++. +|++++.|+.|
T Consensus 165 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v 241 (401)
T 4aez_A 165 SQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVV 241 (401)
T ss_dssp TCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCE
T ss_pred CCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeE
Confidence 99999999999999999999 5679999999999999999976667888999999999999999866 67799999999
Q ss_pred EEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEE---cCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 003279 663 RYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAA---IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 738 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s---~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Las 738 (834)
++||+++++.+..+. +...+.+++|+|++..+++.+ .|+.|++||+++++++..+. +...|.+++|+|++.+|++
T Consensus 242 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~ 320 (401)
T 4aez_A 242 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMS 320 (401)
T ss_dssp EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEE
T ss_pred EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEE
Confidence 999999998887775 567799999999876665544 59999999999999988887 6778999999999999998
Q ss_pred E--e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 739 V--S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 739 g--s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
+ . |+.|++||+.++.. .....+..|...|.+++|+|++.+|++++.|+.|++||+.+++.+
T Consensus 321 ~~g~~dg~i~v~~~~~~~~-~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 321 THGFPDNNLSIWSYSSSGL-TKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp EECTTTCEEEEEEEETTEE-EEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred EeecCCCcEEEEecCCccc-eeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 4 3 89999999988632 344456788999999999999999999999999999999998876
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=298.13 Aligned_cols=289 Identities=17% Similarity=0.231 Sum_probs=237.1
Q ss_pred CCceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEe--cCCCCC
Q 003279 477 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI--PASTSK 554 (834)
Q Consensus 477 ~~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l--~gH~~~ 554 (834)
.....+.|+++. .+.+..+++++.++.|++|..... .....+..+ ..|...
T Consensus 19 ~~v~~i~~~p~~-----------~~~~~~~~~~~~~~~v~vw~~~~~----------------~~~~~~~~~~~~~~~~~ 71 (366)
T 3k26_A 19 QPLFGVQFNWHS-----------KEGDPLVFATVGSNRVTLYECHSQ----------------GEIRLLQSYVDADADEN 71 (366)
T ss_dssp SCEEEEEECTTC-----------CTTSCEEEEEEETTEEEEEEECGG----------------GCEEEEEEEECSCTTCC
T ss_pred CceEEEEEeccc-----------CCCCceEEEECCCCEEEEEEcCCC----------------cEEEeeeeccccCCCCc
Confidence 456667777642 112344555555669999965432 111222222 248899
Q ss_pred eEEEEEcCC----CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCCce
Q 003279 555 VESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYS 629 (834)
Q Consensus 555 V~sl~fSpd----g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s~~~~ 629 (834)
|++++|+|+ +.+|++|+.||.|+|||+.+++.+..+.+|...|.+++|+| ++.+|++++.||.|++||+.++..
T Consensus 72 v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~- 150 (366)
T 3k26_A 72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL- 150 (366)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-
T ss_pred EEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-
Confidence 999999999 67999999999999999999999999999999999999999 899999999999999999997653
Q ss_pred eeee---ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-----------------------------
Q 003279 630 LRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----------------------------- 677 (834)
Q Consensus 630 i~~~---~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~----------------------------- 677 (834)
+..+ ..|...|.+++|+|++. +|++++.||.|++||+++++....+.
T Consensus 151 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (366)
T 3k26_A 151 VAIFGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI 229 (366)
T ss_dssp EEEECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSS
T ss_pred EEEecccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccC
Confidence 5555 68999999999999876 66789999999999999876554333
Q ss_pred cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe--------------EEEEEeCCCCCEEEEEEcCC--CCEEEEEe-
Q 003279 678 CQSGATQMRFQPRLGRILAAAIENYISILDVETQV--------------CRLKLQGHKNQVHSVCWNTS--GEYLASVS- 740 (834)
Q Consensus 678 ~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~--------------~~~~l~~h~~~I~sl~~spd--g~~Lasgs- 740 (834)
+...|.+++|+ +.++++++.|+.|++||++++. .+..+..|...|.+++|+|+ +.+|++++
T Consensus 230 ~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 230 HRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp CSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT
T ss_pred CcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEec
Confidence 56779999999 6799999999999999998763 47888889999999999999 99999999
Q ss_pred CCeEEEEEcCCCCCce-eEEEeecC--CCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 741 DELVRVWSIGSGSKGE-CIHELSCT--GNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 741 Dg~I~IwDl~s~~~~~-~i~~~~~~--~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
|+.|++||+.++.... ....+..| ...|.+++|+|++.+|++++.|+.|++||+.+
T Consensus 308 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 9999999999875433 45566666 78999999999999999999999999999853
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=303.42 Aligned_cols=273 Identities=25% Similarity=0.465 Sum_probs=242.3
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEec
Q 003279 544 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 623 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 623 (834)
....+.+|.+.|.. +++++|++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +.+|++|+.||+|++||+
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~ 186 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNA 186 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEEC
Confidence 34678899987643 245568999999999999999999999999999999999999997 569999999999999999
Q ss_pred CCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCe
Q 003279 624 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENY 702 (834)
Q Consensus 624 ~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~ 702 (834)
.++. .+..+.+|...|.+++|++ ..+++|+.||.|++||+++++++..+.. ...+.++.| ++..+++++.|+.
T Consensus 187 ~~~~-~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~ 260 (445)
T 2ovr_B 187 ETGE-CIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFM 260 (445)
T ss_dssp TTTE-EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSC
T ss_pred CcCc-EEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCE
Confidence 9865 4788889999999999973 3688999999999999999998888764 567888888 6789999999999
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 003279 703 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 781 (834)
Q Consensus 703 I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~ 781 (834)
|++||+++++++..+.+|...|.+++| ++.++++++ |+.|++||++++ .++..+..|...+.++.++ +.+|+
T Consensus 261 i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~--~~~l~ 333 (445)
T 2ovr_B 261 VKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELK--DNILV 333 (445)
T ss_dssp EEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC---CEEEEECCCCSCEEEEEEE--TTEEE
T ss_pred EEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC---CEEEEEcCCcccEEEEEEe--CCEEE
Confidence 999999999999999999999999999 788999988 999999999988 6788888888888888875 56899
Q ss_pred EEEcCCeEEEEECCCCeEE-Eecc---CCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 782 VIGCYETLELWNMTENKTL-TLSA---HDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 782 sgs~dg~I~Iwdl~~~~~~-~l~~---h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+++.|+.|++||+.+++.+ .+.. |...|.+++|+ +.+|++|+.||.|+|||
T Consensus 334 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 334 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD 388 (445)
T ss_dssp EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence 9999999999999998877 4444 88999999995 68999999999999996
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=292.55 Aligned_cols=247 Identities=19% Similarity=0.358 Sum_probs=210.5
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC-ceeeeeccCCCCeEEEEEccC-CCcEEEEEeCCCcEEEE
Q 003279 588 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYW 665 (834)
Q Consensus 588 ~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~-~~i~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~lw 665 (834)
..+.+|.+.|++++|+|++++||+|+.|++|+|||+.... ..+..+.+|...|.+++|+++ ...+|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 4577899999999999999999999999999999997532 346788999999999999864 24588899999999999
Q ss_pred ECCCCc--eeeEee-cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCCe--EEEEEeCCCCCEEEEEEcCC------
Q 003279 666 SINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTS------ 732 (834)
Q Consensus 666 Dl~s~~--~i~~~~-~~~~i~~l~~sp~--g~~ll~~s~dg~I~iwDl~t~~--~~~~l~~h~~~I~sl~~spd------ 732 (834)
|+++++ .+..+. +...|.+++|+|+ +.+|++++.|+.|++||++++. ....+.+|...|.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 999874 334443 4677999999997 7899999999999999998763 24567789999999999997
Q ss_pred -------CCEEEEEe-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCCe--
Q 003279 733 -------GEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENK-- 798 (834)
Q Consensus 733 -------g~~Lasgs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~svafspdg---~~L~sgs~dg~I~Iwdl~~~~-- 798 (834)
+.+|++++ |+.|+|||++++.. ......+.+|...|.+++|+|++ .+|++++.|++|+|||+.+..
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 56899988 99999999987642 22566788899999999999995 789999999999999997742
Q ss_pred --EEEe--ccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 799 --TLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 799 --~~~l--~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
...+ ..|...|.+++|+|++++||+++.||.|+||+
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 1222 46889999999999999999999999999995
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=284.62 Aligned_cols=267 Identities=16% Similarity=0.209 Sum_probs=230.8
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
+.++++|+.|+.|++|..... .....+..|...|.+++|+|++++|++|+.|+.|++|++.
T Consensus 29 ~~~l~s~~~dg~v~vw~~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 89 (313)
T 3odt_A 29 DSKVASVSRDGTVRLWSKDDQ-------------------WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLF 89 (313)
T ss_dssp TTEEEEEETTSEEEEEEESSS-------------------EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred CCEEEEEEcCCcEEEEECCCC-------------------EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEee
Confidence 367899999999999965322 2356677899999999999999999999999999999987
Q ss_pred CC---eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC
Q 003279 583 SF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 583 t~---~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 659 (834)
.. +.+..+.+|...|.+++| ++.+|++++.|+.|++|| .......+..|...|.+++|.|....++++++.|
T Consensus 90 ~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 164 (313)
T 3odt_A 90 ATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK---EGSLVYNLQAHNASVWDAKVVSFSENKFLTASAD 164 (313)
T ss_dssp CCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE---TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETT
T ss_pred ecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc---CCcEEEecccCCCceeEEEEccCCCCEEEEEECC
Confidence 54 667788899999999999 677999999999999999 2345778888999999999999445578899999
Q ss_pred CcEEEEECCCCceeeEee--cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEE
Q 003279 660 SEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 737 (834)
Q Consensus 660 g~I~lwDl~s~~~i~~~~--~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~La 737 (834)
+.|++||. .+....+. +...+.+++|+|++. +++++.|+.|++||+++++.+..+.+|...|++++|+|++. |+
T Consensus 165 ~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~ 240 (313)
T 3odt_A 165 KTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IV 240 (313)
T ss_dssp SCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EE
T ss_pred CCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EE
Confidence 99999994 44455444 567899999999977 99999999999999999999999999999999999999995 55
Q ss_pred EEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE
Q 003279 738 SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 801 (834)
Q Consensus 738 sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~ 801 (834)
+++ |+.|++||+.++ +.+..+..+...|.+++|+|++. +++++.|+.|++||+.+++...
T Consensus 241 ~~~~dg~v~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 241 SCGEDRTVRIWSKENG---SLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp EEETTSEEEEECTTTC---CEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred EEecCCEEEEEECCCC---ceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence 555 999999999988 67888888999999999999998 6789999999999999887663
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-31 Score=298.22 Aligned_cols=272 Identities=19% Similarity=0.302 Sum_probs=233.0
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
++|++| +|++|++|..... . ...+..+.+|...|+||+|+|||++||+|+.||.|+|||+++
T Consensus 117 n~lAvg-ld~tV~lWd~~tg----------------~-~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~ 178 (420)
T 4gga_A 117 NVLAVA-LDNSVYLWSASSG----------------D-ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ 178 (420)
T ss_dssp SEEEEE-ETTEEEEEETTTC----------------C-EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CEEEEE-eCCEEEEEECCCC----------------C-EEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC
Confidence 467776 4899999965432 1 122334568899999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 663 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 663 (834)
++.+..+.+|...|.++.|+ +.+|++|+.|+.+++||.......+..+.+|...+.++.|+|++. ++++++.|+.|+
T Consensus 179 ~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v~ 255 (420)
T 4gga_A 179 QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVN 255 (420)
T ss_dssp TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred CcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC-eeeeeeccccce
Confidence 99999999999999999885 679999999999999999987777888999999999999999976 677999999999
Q ss_pred EEECCCCcee-----eEeecCCCeeEEEEecCCCEEE-EE--EcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCE
Q 003279 664 YWSINNGSCA-----GVFKCQSGATQMRFQPRLGRIL-AA--AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 735 (834)
Q Consensus 664 lwDl~s~~~i-----~~~~~~~~i~~l~~sp~g~~ll-~~--s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~ 735 (834)
+||+.+++.. ....+...|.+++|+|.+..++ ++ +.|+.|++||+.++.+...+..| ..+.++.|++++..
T Consensus 256 i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~ 334 (420)
T 4gga_A 256 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKE 334 (420)
T ss_dssp EEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTE
T ss_pred EEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCe
Confidence 9999876532 2233467799999999766554 33 35899999999999999888854 57899999999998
Q ss_pred EEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 736 LASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 736 Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
+++++ |+.|+|||+.++ .++..+.+|...|.+++|+|+|.+|++++.|++|+|||+.+..+.
T Consensus 335 lv~~sg~~d~~I~iwd~~~~---~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 335 LISGHGFAQNQLVIWKYPTM---AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp EEEEECTTTCCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred EEEEEecCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence 88764 889999999988 788899999999999999999999999999999999999776544
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=297.29 Aligned_cols=267 Identities=15% Similarity=0.171 Sum_probs=222.4
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~IWd~~ 582 (834)
.++++|+.|+.|++|....... .....+.+|.+.|.+++|+| ++++|++++.|+.|++||+.
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~-----------------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQNK-----------------TSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS 149 (383)
T ss_dssp TEEEEEEBTSCEEEEETTSTTC-----------------EEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT
T ss_pred CEEEEEcCCCeEEEEeCCCccc-----------------ceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC
Confidence 6889999999999997653311 11223357999999999999 78999999999999999998
Q ss_pred CCeEEEEecc---CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC
Q 003279 583 SFTVKSTLEE---HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 583 t~~~~~~l~~---h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 659 (834)
+ ..+..+.. |...|.+++|+|++.+|++++.|+.|++||+. ...+..+.+|...|.+++|+|++..+|++++.|
T Consensus 150 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 226 (383)
T 3ei3_B 150 G-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVD 226 (383)
T ss_dssp S-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SCEEEEEECSSSCEEEEEECSSCTTEEEEEETT
T ss_pred C-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCC
Confidence 6 45555543 44889999999999999999999999999995 335788889999999999999988788899999
Q ss_pred CcEEEEECCC----CceeeEeecCCCeeEEEEec-CCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC-------------
Q 003279 660 SEIRYWSINN----GSCAGVFKCQSGATQMRFQP-RLGRILAAAIENYISILDVETQVCRLKLQGHK------------- 721 (834)
Q Consensus 660 g~I~lwDl~s----~~~i~~~~~~~~i~~l~~sp-~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~------------- 721 (834)
+.|++||+++ +.++..+.+...+.+++|+| ++.+|++++.|+.|++||++++.....+.+|.
T Consensus 227 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (383)
T 3ei3_B 227 ATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT 306 (383)
T ss_dssp SEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCE
T ss_pred CEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEe
Confidence 9999999998 67788888888999999999 99999999999999999999886655555442
Q ss_pred ----CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec--CCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 722 ----NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 722 ----~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~--~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
..+..++|+|++++ +++ |+.|+|||+.++ +.+..+.. +...+..++|+|++.+|++++ |+.|+|||+
T Consensus 307 ~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~---~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~ 380 (383)
T 3ei3_B 307 WHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG---GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNR 380 (383)
T ss_dssp ECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC---CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEEC
T ss_pred ccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC---ceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEec
Confidence 33445666677766 444 999999999988 66777766 456778889999999999996 899999998
Q ss_pred CC
Q 003279 795 TE 796 (834)
Q Consensus 795 ~~ 796 (834)
++
T Consensus 381 ~~ 382 (383)
T 3ei3_B 381 ED 382 (383)
T ss_dssp C-
T ss_pred CC
Confidence 75
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=294.68 Aligned_cols=252 Identities=21% Similarity=0.308 Sum_probs=217.6
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCeEEEEeccCCCCeEEEEECCC--CCEEEEEeCCCeEEE
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV 620 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~--t~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~I 620 (834)
+..+.+|.+.|++++|+|++++||+|+.||.|+|||+. +++.+..+.+|...|++++|+++ +.+|++++.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 56778999999999999999999999999999999998 66777889999999999999987 999999999999999
Q ss_pred EecCCCCc-eeeeeccCCCCeEEEEEccCC-CcEEEEEeCCCcEEEEECCCCceee---EeecCCCeeEEEEec------
Q 003279 621 WDTENPDY-SLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAG---VFKCQSGATQMRFQP------ 689 (834)
Q Consensus 621 WDl~s~~~-~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~lwDl~s~~~i~---~~~~~~~i~~l~~sp------ 689 (834)
||+.++.. .+..+..|...|.+++|+|+. ..+|++++.|+.|++||++++.... ...+...+.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 99998652 467778899999999999983 3477799999999999999874332 223567899999999
Q ss_pred -------CCCEEEEEEcCCeEEEEECCCC----eEEEEEeCCCCCEEEEEEcCC---CCEEEEEe-CCeEEEEEcCCCCC
Q 003279 690 -------RLGRILAAAIENYISILDVETQ----VCRLKLQGHKNQVHSVCWNTS---GEYLASVS-DELVRVWSIGSGSK 754 (834)
Q Consensus 690 -------~g~~ll~~s~dg~I~iwDl~t~----~~~~~l~~h~~~I~sl~~spd---g~~Lasgs-Dg~I~IwDl~s~~~ 754 (834)
++..+++++.|+.|++||++++ .....+.+|...|.+++|+|+ +.+|++++ |+.|++||++++..
T Consensus 164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~ 243 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 243 (379)
T ss_dssp ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc
Confidence 6899999999999999999875 355678889999999999999 89999999 99999999998643
Q ss_pred ceeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 755 GECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 755 ~~~i~~~--~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
......+ ..+...|.+++|+|++.+|++++.|+.|++|++..
T Consensus 244 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 244 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp CCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred cceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 2233333 33778899999999999999999999999999873
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-32 Score=303.39 Aligned_cols=279 Identities=15% Similarity=0.229 Sum_probs=235.8
Q ss_pred CCeEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCe----EEEEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCC
Q 003279 553 SKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 553 ~~V~sl~fSpdg~~L-asgs~Dg~I~IWd~~t~~----~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s~ 626 (834)
.....++++|+...+ ++++.||.|+||++.... .+..+.+|.+.|++++|+| ++.+|++|+.||+|+|||+.++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence 345568899887544 457889999999986542 3445778999999999999 8999999999999999999876
Q ss_pred C------ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEe--e-cCCCeeEEEEecCCCEEEEE
Q 003279 627 D------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--K-CQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 627 ~------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~--~-~~~~i~~l~~sp~g~~ll~~ 697 (834)
. ..+..+.+|...|.+++|+|++..+|++++.|+.|++||+++++.+..+ . +...|.+++|+|++.+|+++
T Consensus 115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 194 (402)
T 2aq5_A 115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS 194 (402)
T ss_dssp CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEE
T ss_pred CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEE
Confidence 3 3467888999999999999998778999999999999999999998888 3 56779999999999999999
Q ss_pred EcCCeEEEEECCCCeEEEEE-eCCCCC-EEEEEEcCCCCEEEEE---e-CCeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003279 698 AIENYISILDVETQVCRLKL-QGHKNQ-VHSVCWNTSGEYLASV---S-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 771 (834)
Q Consensus 698 s~dg~I~iwDl~t~~~~~~l-~~h~~~-I~sl~~spdg~~Lasg---s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 771 (834)
+.|+.|++||+++++.+..+ ..|... +.+++|+|++.+|+++ + |+.|++||+++......... ..+...+.++
T Consensus 195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~ 273 (402)
T 2aq5_A 195 CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE-LDTSSGVLLP 273 (402)
T ss_dssp ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE-CCCCSSCEEE
T ss_pred ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe-ccCCCceeEE
Confidence 99999999999999999988 678776 8999999999999998 5 89999999998743222222 2456779999
Q ss_pred EEeCCCCEEEEEE-cCCeEEEEECCCCe--EEEec--cCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 772 VFHPTFPSLLVIG-CYETLELWNMTENK--TLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 772 afspdg~~L~sgs-~dg~I~Iwdl~~~~--~~~l~--~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+|+|++.+|++++ .|+.|++||+.+++ ...+. .|...|.+++|+|++.++++ .|+.+++|+
T Consensus 274 ~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 274 FFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK 339 (402)
T ss_dssp EEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred EEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence 9999999997665 69999999999887 33333 36699999999999988764 577899995
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=305.04 Aligned_cols=275 Identities=14% Similarity=0.167 Sum_probs=218.0
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
...++++|+.|+.|++|..... .+..+..+.+|.+.|++++|+|++++|++|+.|+.|+|||+
T Consensus 22 ~g~~l~~~~~d~~i~iw~~~~~-----------------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 22 QRTEFVTTTATNQVELYEQDGN-----------------GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp SSSEEECCCSSSCBCEEEEETT-----------------EEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred CCCEEEEecCCCEEEEEEccCC-----------------ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 3478999999999999965322 12345677899999999999999999999999999999999
Q ss_pred CCCe---EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc--eeeeecc-CCCCeEEEEEccCCCcEEEE
Q 003279 582 ESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTG-HSTTVMSLDFHPSKEDLLCS 655 (834)
Q Consensus 582 ~t~~---~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~--~i~~~~~-h~~~V~sl~fspdg~~llas 655 (834)
.+++ ....+..|...|.+++|+|++++|++++.|+.|++||+.+... ....+.. |...|.+++|+|++. +|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~ 163 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV-LLAA 163 (377)
T ss_dssp ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS-EEEE
T ss_pred CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC-EEEE
Confidence 9877 6777889999999999999999999999999999999997652 3566666 999999999999976 7779
Q ss_pred EeCCCcEEEEECC------------------CCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE----
Q 003279 656 CDNNSEIRYWSIN------------------NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC---- 713 (834)
Q Consensus 656 gs~Dg~I~lwDl~------------------s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~---- 713 (834)
++.|+.|++||++ .++++..+.+...|.+++|+|++.+|++++.|+.|++||+++++.
T Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 243 (377)
T 3dwl_C 164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA 243 (377)
T ss_dssp EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence 9999999999985 244555555667799999999999999999999999999999876
Q ss_pred EEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCC---------------------------ceeE------EE
Q 003279 714 RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK---------------------------GECI------HE 760 (834)
Q Consensus 714 ~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~---------------------------~~~i------~~ 760 (834)
+..+.+|...|.+++|+|++++|++++++.+.+|+...... ...+ ..
T Consensus 244 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (377)
T 3dwl_C 244 LITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRST 323 (377)
T ss_dssp CCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC------------
T ss_pred eEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEeeeccccccccccccccccccccccccccccccccc
Confidence 77888999999999999999999999977677887763210 0000 00
Q ss_pred e----------------ecCCCceEEEEEeCCCC----EEEEEEcCCeEEEEEC
Q 003279 761 L----------------SCTGNKFHSCVFHPTFP----SLLVIGCYETLELWNM 794 (834)
Q Consensus 761 ~----------------~~~~~~I~svafspdg~----~L~sgs~dg~I~Iwdl 794 (834)
+ ..|...|.++++.+... .|++++.||.|+|||+
T Consensus 324 ~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 324 FRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 1 12888999999766543 5999999999999985
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-30 Score=288.76 Aligned_cols=318 Identities=14% Similarity=0.248 Sum_probs=227.0
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~IWd~~ 582 (834)
.++++|+.|+.|++|............... ..........+|...|.+++|+| ++.+|++++.||.|++||+.
T Consensus 57 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 130 (408)
T 4a11_B 57 RYMLSGGSDGVIVLYDLENSSRQSYYTCKA------VCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTN 130 (408)
T ss_dssp CEEEEEETTSCEEEEECCCCSSSSCEEECE------EEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETT
T ss_pred CEEEEEcCCCeEEEEECCCCcccceEeccc------cccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCC
Confidence 789999999999999776543221110000 00000111246999999999999 78899999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCC---CCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC
Q 003279 583 SFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l~fspd---g~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D 659 (834)
+++.+..+. +...+.++.|++. +.+|++++.|+.|++||+.++.. +..+..|...|.+++|+|++..+|++++.|
T Consensus 131 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~ll~~~~~d 208 (408)
T 4a11_B 131 TLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-SHILQGHRQEILAVSWSPRYDYILATASAD 208 (408)
T ss_dssp TTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-CEEECCCCSCEEEEEECSSCTTEEEEEETT
T ss_pred CCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-eeeecCCCCcEEEEEECCCCCcEEEEEcCC
Confidence 999988876 7788999999984 45999999999999999997654 678888999999999999999889999999
Q ss_pred CcEEEEECCCCc-eeeEe----------------ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC-
Q 003279 660 SEIRYWSINNGS-CAGVF----------------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK- 721 (834)
Q Consensus 660 g~I~lwDl~s~~-~i~~~----------------~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~- 721 (834)
|.|++||++++. ++..+ .+...+.+++|+|++.+|++++.|+.|++||+++++....+..+.
T Consensus 209 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 288 (408)
T 4a11_B 209 SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVC 288 (408)
T ss_dssp SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCC
T ss_pred CcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccc
Confidence 999999998765 33332 245679999999999999999999999999999887654443221
Q ss_pred -----CCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 722 -----NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 722 -----~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
.....+.......+++++.|+.|++||+.++ ..+..+..|...|.+++|+|++.+|++++.|+.|++||+.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 289 NNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL 365 (408)
T ss_dssp CCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred ccccccceeEEecCCCceEEEEecCCEEEEEECcCC---cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence 1222333344556666666999999999988 78888999999999999999999999999999999999999
Q ss_pred CeEEEeccCCCCeEEEEEeC-CCCEEEEEecCCcEEEeC
Q 003279 797 NKTLTLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK 834 (834)
Q Consensus 797 ~~~~~l~~h~~~V~~lafsp-dg~~LaSgs~DG~I~IWd 834 (834)
++.+......... ..+.+ ....+.+++.|+.|++|+
T Consensus 366 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~W~ 402 (408)
T 4a11_B 366 YEPVPDDDETTTK--SQLNPAFEDAWSSSDEEGGTSAWS 402 (408)
T ss_dssp ---------------------------------------
T ss_pred CCccCCCCceEec--cccccccceeecccCccCceeecC
Confidence 8877432222222 22233 334566778899999995
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=303.23 Aligned_cols=285 Identities=14% Similarity=0.201 Sum_probs=226.7
Q ss_pred CceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEE
Q 003279 478 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 557 (834)
Q Consensus 478 ~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~s 557 (834)
...++.|+|.. +.+|++|+.|+.|++|....... ..+..+.+|.+.|++
T Consensus 121 ~V~~l~~~P~~--------------~~~lasGs~dg~i~lWd~~~~~~-----------------~~~~~~~gH~~~V~~ 169 (435)
T 4e54_B 121 RATSLAWHPTH--------------PSTVAVGSKGGDIMLWNFGIKDK-----------------PTFIKGIGAGGSITG 169 (435)
T ss_dssp CEEEEEECSSC--------------TTCEEEEETTSCEEEECSSCCSC-----------------CEEECCCSSSCCCCE
T ss_pred CEEEEEEeCCC--------------CCEEEEEeCCCEEEEEECCCCCc-----------------eeEEEccCCCCCEEE
Confidence 45677777643 36899999999999996543211 123456799999999
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecc--CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeec
Q 003279 558 CHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 634 (834)
Q Consensus 558 l~fSp-dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~--h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~ 634 (834)
|+|+| ++.+|++|+.||+|+|||+++......... +...+.+++|++++.+|++|+.||.|++||++.. .+..+.
T Consensus 170 l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~ 247 (435)
T 4e54_B 170 LKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELWNLR 247 (435)
T ss_dssp EEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCCCSB
T ss_pred EEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeEEEe
Confidence 99998 789999999999999999987655444433 3456789999999999999999999999999753 367788
Q ss_pred cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEe----ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003279 635 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KCQSGATQMRFQPRLGRILAAAIENYISILDVET 710 (834)
Q Consensus 635 ~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~----~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t 710 (834)
+|...|.+++|+|++..+|++|+.|+.|++||+++.+....+ .+...|.+++|+|++.+|++++.|+.|++||+++
T Consensus 248 ~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~ 327 (435)
T 4e54_B 248 MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ 327 (435)
T ss_dssp CCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS
T ss_pred cccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCC
Confidence 999999999999999989999999999999999887654433 3567899999999999999999999999999999
Q ss_pred CeEEEEEeCCCC------CEEEEEEcCCCCEEEEEe-------------CCeEEEEEcCCCCCceeEEEe-ecCCCceEE
Q 003279 711 QVCRLKLQGHKN------QVHSVCWNTSGEYLASVS-------------DELVRVWSIGSGSKGECIHEL-SCTGNKFHS 770 (834)
Q Consensus 711 ~~~~~~l~~h~~------~I~sl~~spdg~~Lasgs-------------Dg~I~IwDl~s~~~~~~i~~~-~~~~~~I~s 770 (834)
+.+...+..|.. .+..+.|+|++.+++++. ++.|++||..++ ..+..+ ..|...|.+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g---~~~~~l~~~~~~~v~s 404 (435)
T 4e54_B 328 WDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG---KMMCQLYDPESSGISS 404 (435)
T ss_dssp SSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC---CEEEEECCSSCCCCCC
T ss_pred CccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC---cEEEEEeCCCCCcEEE
Confidence 988777766543 233557777777776654 247999999988 555554 457777877
Q ss_pred E-EEeCCCCEEEEEEcCCeEEEEECCCCeE
Q 003279 771 C-VFHPTFPSLLVIGCYETLELWNMTENKT 799 (834)
Q Consensus 771 v-afspdg~~L~sgs~dg~I~Iwdl~~~~~ 799 (834)
+ +|+|+|.+|++++ |+.|+|||+++++.
T Consensus 405 ~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 405 LNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp EEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred EEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 7 6999999887765 88999999998865
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=296.81 Aligned_cols=246 Identities=19% Similarity=0.325 Sum_probs=204.5
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc-eeeeeccCCCCeEEEEEccC-CCcEEEEEeCCCcEEEEE
Q 003279 589 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWS 666 (834)
Q Consensus 589 ~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~-~i~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~lwD 666 (834)
.+.+|.+.|++++|+|++++|++|+.|++|+|||+.++.. .+..+.+|...|.+++|+++ ...+|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 4568999999999999999999999999999999987643 45778899999999999863 244788999999999999
Q ss_pred CCCCc--eeeEee-cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCCe---EEEEEeCCCCCEEEEEEcCC------
Q 003279 667 INNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQV---CRLKLQGHKNQVHSVCWNTS------ 732 (834)
Q Consensus 667 l~s~~--~i~~~~-~~~~i~~l~~sp~--g~~ll~~s~dg~I~iwDl~t~~---~~~~l~~h~~~I~sl~~spd------ 732 (834)
++++. ....+. +...|.+++|+|+ +.+|++++.|+.|++||++.+. ....+.+|...|.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 99874 444443 4667999999998 7789999999999999998763 23455679999999999997
Q ss_pred -----------CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCC
Q 003279 733 -----------GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 733 -----------g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg----~~L~sgs~dg~I~Iwdl~~ 796 (834)
+.+|++++ |+.|++||++......++..+..|...|.+++|+|++ .+|++++.|++|+|||+.+
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 46888888 9999999997654335677788899999999999987 7899999999999999876
Q ss_pred C---e--EEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 797 N---K--TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 797 ~---~--~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
. . ...+..|...|.+++|+|++.+||+++.||.|+||+
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 2 1 124567899999999999999999999999999996
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-30 Score=293.41 Aligned_cols=285 Identities=9% Similarity=0.055 Sum_probs=244.6
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE-----EeccCCCCeEEEEECCCCCEEEEEeCCCe
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-----TLEEHTQWITDVRFSPSLSRLATSSADRT 617 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~-----~l~~h~~~I~~l~fspdg~~Latgs~Dg~ 617 (834)
..+..+..+. .+.+++|+|++.++++++.|+.|++||+.+++.+. .+.+|...|.+++|++++.++++++.|+.
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence 4455555554 46699999988888888889999999999998887 34578999999999999999999999999
Q ss_pred EEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEE
Q 003279 618 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 618 I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~ 697 (834)
|++||+.++.. +..+..|...+.+++|+|++..++++++.|+.|++||+++++.+..+.....+.+++|+|+++.++++
T Consensus 193 v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 193 VHVFDLKTLAY-KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIA 271 (433)
T ss_dssp EEEEETTTCCE-EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEE
T ss_pred EEEEECCCceE-EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEE
Confidence 99999987654 66777889999999999999988778878999999999999998888887889999999999999998
Q ss_pred E--------cCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE-e-CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003279 698 A--------IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV-S-DELVRVWSIGSGSKGECIHELSCTGNK 767 (834)
Q Consensus 698 s--------~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasg-s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 767 (834)
+ .|+.|++||+++++.+..+. |...+.+++|+|++++++++ + |+.|++||+.++ +.+..+. +...
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~---~~~~~~~-~~~~ 346 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK---KVQKSIP-VFDK 346 (433)
T ss_dssp EEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSS
T ss_pred ECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC---cEEEEec-CCCC
Confidence 8 47899999999998777664 56689999999999866554 5 899999999977 5555554 5677
Q ss_pred eEEEEEeCCCCEEEEEEc---------------CCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEec-CCcEE
Q 003279 768 FHSCVFHPTFPSLLVIGC---------------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-DKCVK 831 (834)
Q Consensus 768 I~svafspdg~~L~sgs~---------------dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~-DG~I~ 831 (834)
+.+++|+|++++|++++. ||.|++||+.+++.+....+...+.+++|+|++++|++++. |+.|+
T Consensus 347 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~ 426 (433)
T 3bws_A 347 PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIR 426 (433)
T ss_dssp EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEE
T ss_pred CCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEE
Confidence 999999999999998887 46999999999998865556678999999999999988875 99999
Q ss_pred EeC
Q 003279 832 IWK 834 (834)
Q Consensus 832 IWd 834 (834)
||+
T Consensus 427 v~~ 429 (433)
T 3bws_A 427 VYR 429 (433)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-31 Score=288.24 Aligned_cols=250 Identities=20% Similarity=0.363 Sum_probs=214.6
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC-ceeeeeccCCCCeEEEEEccCC-CcEEEEEeCCCcE
Q 003279 585 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEI 662 (834)
Q Consensus 585 ~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~-~~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I 662 (834)
+.+..+.+|.+.|++++|+|++++|++++.||.|+|||+.... ..+..+.+|...|++++|+++. ..+|++++.||.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 4566788999999999999999999999999999999998432 3456788999999999998762 3478899999999
Q ss_pred EEEECCCCc--eeeEee-cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCC--eEEEEEeCCCCCEEEEEEcC----
Q 003279 663 RYWSINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNT---- 731 (834)
Q Consensus 663 ~lwDl~s~~--~i~~~~-~~~~i~~l~~sp~--g~~ll~~s~dg~I~iwDl~t~--~~~~~l~~h~~~I~sl~~sp---- 731 (834)
++||+.+++ .+..+. +...+.+++|+|+ +..|++++.|+.|++||+++. .....+..|...|.+++|+|
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 999999986 444444 4678999999999 999999999999999999987 44556778999999999999
Q ss_pred ---------CCCEEEEEe-CCeEEEEEcCCCCCc-eeEEEeecCCCceEEEEEeCC---CCEEEEEEcCCeEEEEECCCC
Q 003279 732 ---------SGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTGNKFHSCVFHPT---FPSLLVIGCYETLELWNMTEN 797 (834)
Q Consensus 732 ---------dg~~Lasgs-Dg~I~IwDl~s~~~~-~~i~~~~~~~~~I~svafspd---g~~L~sgs~dg~I~Iwdl~~~ 797 (834)
++.+|++++ |+.|++||++++... ..+..+..|...|.+++|+|+ +.+|++++.|+.|++||+.++
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 699999998 999999999876432 355678889999999999999 899999999999999999886
Q ss_pred e----EE--EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 798 K----TL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 798 ~----~~--~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
. .. ....|...|.+++|+|++++|++++.||.|+|||
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 3 22 3335889999999999999999999999999996
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-29 Score=271.59 Aligned_cols=270 Identities=19% Similarity=0.292 Sum_probs=228.0
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
++|++| .|++|++|+.... .. .....+.+|...|++++|+|++++||+|+.||+|+|||+++
T Consensus 37 ~~lAvg-~D~tV~iWd~~tg----------------~~-~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~ 98 (318)
T 4ggc_A 37 NVLAVA-LDNSVYLWSASSG----------------DI-LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ 98 (318)
T ss_dssp SEEEEE-ETTEEEEEETTTC----------------CE-EEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CEEEEE-eCCEEEEEECCCC----------------CE-EEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC
Confidence 367776 4899999965432 11 12234568899999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 663 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 663 (834)
++.+..+.+|...+.++.+ ++.+|++++.++.+++|+.......+..+.+|...+.++.|.+++. ++++++.|+.|+
T Consensus 99 ~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~ 175 (318)
T 4ggc_A 99 QKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVN 175 (318)
T ss_dssp TEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred ceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEEEecCccee
Confidence 9999999999999887766 4679999999999999999988877888999999999999999976 667999999999
Q ss_pred EEECCCCceee-----EeecCCCeeEEEEecCCCEEE---EEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCE
Q 003279 664 YWSINNGSCAG-----VFKCQSGATQMRFQPRLGRIL---AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 735 (834)
Q Consensus 664 lwDl~s~~~i~-----~~~~~~~i~~l~~sp~g~~ll---~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~ 735 (834)
+||+++++... ...+...+.++.+++.+..++ +++.++.|++||.+......... +...+..++|++++..
T Consensus 176 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 254 (318)
T 4ggc_A 176 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKE 254 (318)
T ss_dssp EEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTE
T ss_pred EEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccc
Confidence 99998865332 222456789999999776544 33457899999999988776665 6778999999999998
Q ss_pred EEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 003279 736 LASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 798 (834)
Q Consensus 736 Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~ 798 (834)
+++++ |+.|+|||+.++ +++..+.+|...|++++|+|++.+|++++.|++|+|||+.+..
T Consensus 255 ~~~~sg~~d~~i~iwd~~~~---~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 255 LISGHGFAQNQLVIWKYPTM---AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEEECTTTCCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred eEEEEEcCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 87654 889999999988 7888999999999999999999999999999999999997653
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.7e-30 Score=291.83 Aligned_cols=289 Identities=15% Similarity=0.270 Sum_probs=230.7
Q ss_pred CCceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCC----
Q 003279 477 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST---- 552 (834)
Q Consensus 477 ~~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~---- 552 (834)
....++.|++++ .++++|+.|+.|++|......... ......+..+..+.+|.
T Consensus 29 ~~V~~v~~s~~g---------------~~la~g~~dg~v~iw~~~~~~~~~--------~~~~~~~~~~~~~~~h~~~~~ 85 (447)
T 3dw8_B 29 DIISTVEFNHSG---------------ELLATGDKGGRVVIFQQEQENKIQ--------SHSRGEYNVYSTFQSHEPEFD 85 (447)
T ss_dssp GSEEEEEECSSS---------------SEEEEEETTSEEEEEEECC-------------CCCCCCEEEEEEEECCCCEEE
T ss_pred CcEEEEEECCCC---------------CEEEEEcCCCeEEEEEecCCCCCC--------cccccceeEeccccccccccc
Confidence 356667777755 789999999999999765543110 11122345677888998
Q ss_pred --------CCeEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCeEE-----------------------------------
Q 003279 553 --------SKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTVK----------------------------------- 587 (834)
Q Consensus 553 --------~~V~sl~fSpdg--~~Lasgs~Dg~I~IWd~~t~~~~----------------------------------- 587 (834)
+.|++++|+|++ .+|++++.|+.|+|||+.++...
T Consensus 86 ~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 165 (447)
T 3dw8_B 86 YLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVE 165 (447)
T ss_dssp GGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEE
T ss_pred ccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeee
Confidence 899999999998 79999999999999998764432
Q ss_pred ----EE-eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceee-------eeccCCCCeEEEEEccCCCcEEEE
Q 003279 588 ----ST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR-------TFTGHSTTVMSLDFHPSKEDLLCS 655 (834)
Q Consensus 588 ----~~-l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~-------~~~~h~~~V~sl~fspdg~~llas 655 (834)
.. ..+|...|++++|+|++++|++| .|+.|++||+......+. .+.+|...|.+++|+|++..+|++
T Consensus 166 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s 244 (447)
T 3dw8_B 166 ASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVY 244 (447)
T ss_dssp EEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEE
T ss_pred ccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEE
Confidence 12 36899999999999999999998 899999999985443343 366899999999999998568889
Q ss_pred EeCCCcEEEEECCCCce----eeEeecCC-------------CeeEEEEecCCCEEEEEEcCCeEEEEECCC-CeEEEEE
Q 003279 656 CDNNSEIRYWSINNGSC----AGVFKCQS-------------GATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKL 717 (834)
Q Consensus 656 gs~Dg~I~lwDl~s~~~----i~~~~~~~-------------~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t-~~~~~~l 717 (834)
++.||.|++||+++++. +..+..+. .|.+++|+|++.+|++++. +.|++||+++ ++++..+
T Consensus 245 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~ 323 (447)
T 3dw8_B 245 SSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETY 323 (447)
T ss_dssp EETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCE
T ss_pred EeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccccee
Confidence 99999999999999886 56666543 7999999999999999998 9999999997 8888888
Q ss_pred eCCCCC---------------EEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-------------------
Q 003279 718 QGHKNQ---------------VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS------------------- 762 (834)
Q Consensus 718 ~~h~~~---------------I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~------------------- 762 (834)
.+|... +..++|+|++.+|++++ |+.|+|||+.++.. + .+.
T Consensus 324 ~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~ 399 (447)
T 3dw8_B 324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD---I-TLEASRENNKPRTVLKPRKVCA 399 (447)
T ss_dssp ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE---E-EEECCSTTCCTTCBCCCCCEEC
T ss_pred eccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc---e-eeeecccccccccccCCccccc
Confidence 877532 33499999999999999 99999999998732 2 111
Q ss_pred --------------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 763 --------------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 763 --------------~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
.....|..++|+|++..|++++.++ +++|..+
T Consensus 400 ~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 400 SGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp SSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 1235688999999999988887765 8888654
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-30 Score=290.93 Aligned_cols=281 Identities=18% Similarity=0.367 Sum_probs=227.7
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
+.++++|+.|+.|++|..... ..+..+.+|.+.|.+++| ++++|++|+.||.|++||+.
T Consensus 143 ~~~l~~g~~dg~i~iwd~~~~-------------------~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 143 DQKIVSGLRDNTIKIWDKNTL-------------------ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp SSEEEEEESSSCEEEEESSSC-------------------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred CCEEEEEeCCCeEEEEeCCCC-------------------eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 368899999999999965322 235677899999999999 78899999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCce--eeeeccCCCCeEEEEEccCCCcEEEEEeCCC
Q 003279 583 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 660 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~--i~~~~~h~~~V~sl~fspdg~~llasgs~Dg 660 (834)
+++.+..+.+|...|.+++|++ .+|++|+.||.|++||+.++... ...+.+|...|.+++|. ..++++++.||
T Consensus 202 ~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg 276 (435)
T 1p22_A 202 TGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDR 276 (435)
T ss_dssp SCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE---TTEEEEEETTS
T ss_pred CCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC---CCEEEEEeCCC
Confidence 9999999999999999999974 59999999999999999876542 26778899999999994 34788999999
Q ss_pred cEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 003279 661 EIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 661 ~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasg 739 (834)
.|++||+++++++..+.. ...+.++.++ +..+++++.|+.|++||+++++++..+.+|...|.+++| ++.+|+++
T Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg 352 (435)
T 1p22_A 277 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG 352 (435)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEE
T ss_pred eEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEE
Confidence 999999999999988874 5678888884 679999999999999999999999999999999999999 78899999
Q ss_pred e-CCeEEEEEcCCCCC------ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEE
Q 003279 740 S-DELVRVWSIGSGSK------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSL 812 (834)
Q Consensus 740 s-Dg~I~IwDl~s~~~------~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~l 812 (834)
+ ||.|++||+.++.. ..++..+..|...|.+++| ++.+|++++.|+.|++||+.+...........++.++
T Consensus 353 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 430 (435)
T 1p22_A 353 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTY 430 (435)
T ss_dssp ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-------------------
T ss_pred eCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccce
Confidence 8 99999999976531 1177888899999999999 6788999999999999999887766444444555555
Q ss_pred EEe
Q 003279 813 AAS 815 (834)
Q Consensus 813 afs 815 (834)
.|.
T Consensus 431 ~~~ 433 (435)
T 1p22_A 431 TYI 433 (435)
T ss_dssp ---
T ss_pred eee
Confidence 554
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-31 Score=299.25 Aligned_cols=264 Identities=15% Similarity=0.208 Sum_probs=219.3
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-ccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCC---CCce-eee
Q 003279 559 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN---PDYS-LRT 632 (834)
Q Consensus 559 ~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l-~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s---~~~~-i~~ 632 (834)
.|+|++..+++++ +|+ .+++.+..+ .+|.+.|++++|+| ++.+|++|+.||+|+|||+.+ +... ...
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 3677887777665 487 556888888 89999999999999 999999999999999999876 3211 122
Q ss_pred eccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC---CCceeeEee-------------cCCCeeEEE--EecCCCEE
Q 003279 633 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSCAGVFK-------------CQSGATQMR--FQPRLGRI 694 (834)
Q Consensus 633 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~---s~~~i~~~~-------------~~~~i~~l~--~sp~g~~l 694 (834)
...|...|.+++|+|++. +|++++.||.|++||++ +++....+. ....+.++. +++++..+
T Consensus 107 ~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (437)
T 3gre_A 107 TYDCSSTVTQITMIPNFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL 185 (437)
T ss_dssp EEECSSCEEEEEECTTSS-EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred eccCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence 225999999999999866 67799999999999995 555444333 234466666 55788999
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEeC--CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-cCCCceEE
Q 003279 695 LAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-CTGNKFHS 770 (834)
Q Consensus 695 l~~s~dg~I~iwDl~t~~~~~~l~~--h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-~~~~~I~s 770 (834)
++++.|+.|++||+++++++..+.. |...|++++|+|++.+|++++ |+.|++||++++ .++..+. .+...|.+
T Consensus 186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~ 262 (437)
T 3gre_A 186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN---VLIRSWSFGDHAPITH 262 (437)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT---EEEEEEBCTTCEEEEE
T ss_pred EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc---cEEEEEecCCCCceEE
Confidence 9999999999999999999999988 889999999999999999999 999999999987 7777765 67778999
Q ss_pred EEEeC----CCCEEEEEEcCCeEEEEECCCCeEE-Eecc--------------------------CCCCeEEEEEeCCCC
Q 003279 771 CVFHP----TFPSLLVIGCYETLELWNMTENKTL-TLSA--------------------------HDKLVSSLAASTVNG 819 (834)
Q Consensus 771 vafsp----dg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~--------------------------h~~~V~~lafspdg~ 819 (834)
++|+| ++.+|++++.|+.|++||+.+++.+ .+.+ |...|++++|+ +++
T Consensus 263 ~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~ 341 (437)
T 3gre_A 263 VEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK 341 (437)
T ss_dssp EEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred EEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce
Confidence 96664 5779999999999999999988866 2222 66779999999 789
Q ss_pred EEEEEecCCcEEEeC
Q 003279 820 MVASASHDKCVKIWK 834 (834)
Q Consensus 820 ~LaSgs~DG~I~IWd 834 (834)
+|++|+.||.|+|||
T Consensus 342 ~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 342 ILLTDEATSSIVMFS 356 (437)
T ss_dssp EEEEEGGGTEEEEEE
T ss_pred EEEecCCCCeEEEEE
Confidence 999999999999996
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-30 Score=283.30 Aligned_cols=274 Identities=14% Similarity=0.159 Sum_probs=216.4
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEec
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDT 623 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl 623 (834)
+..+.+|.+.|+|++|+|||++||+|+.++ ++|||+++++.......+ .+..+++.++++.+ ++++.|++|+|||+
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd~ 88 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWDD 88 (355)
T ss_dssp -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence 445678999999999999999999998765 789999988776554332 58889999988877 56778899999999
Q ss_pred CCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC-ceeeEeecCCCeeEEEEecCCCEEEE--EEcC
Q 003279 624 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILA--AAIE 700 (834)
Q Consensus 624 ~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~-~~i~~~~~~~~i~~l~~sp~g~~ll~--~s~d 700 (834)
.+++. +..+. |...|.+++|+++ .++++. |+.|++||+.++ +.+..+.. ....+++++ ..+++ ++.+
T Consensus 89 ~~~~~-~~~~~-~~~~v~~v~~~~~---~~~~~~-~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~ 158 (355)
T 3vu4_A 89 VKKQD-VSRIK-VDAPVKDLFLSRE---FIVVSY-GDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNL 158 (355)
T ss_dssp TTTEE-EEEEE-CSSCEEEEEECSS---EEEEEE-TTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSCT
T ss_pred CCCcE-EEEEE-CCCceEEEEEcCC---EEEEEE-cCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCcC
Confidence 98654 55554 6779999999976 233343 789999999988 77666665 444566676 56666 4678
Q ss_pred CeEEEEECCCCe----------------EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCe-EEEEEcCCCCCceeEEEee
Q 003279 701 NYISILDVETQV----------------CRLKLQGHKNQVHSVCWNTSGEYLASVS-DEL-VRVWSIGSGSKGECIHELS 762 (834)
Q Consensus 701 g~I~iwDl~t~~----------------~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~-I~IwDl~s~~~~~~i~~~~ 762 (834)
|.|++||++++. ++..+.+|...|++++|+|+|.+|++++ |++ |+|||++++ .++..+.
T Consensus 159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~---~~~~~~~ 235 (355)
T 3vu4_A 159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG---VLVREFR 235 (355)
T ss_dssp TCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC---CEEEEEE
T ss_pred cEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEE
Confidence 999999999865 2678889999999999999999999999 998 999999988 6778887
Q ss_pred -c-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE---Ee--------------------c-cCCCCeEEEEEeC
Q 003279 763 -C-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TL--------------------S-AHDKLVSSLAAST 816 (834)
Q Consensus 763 -~-~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~---~l--------------------~-~h~~~V~~lafsp 816 (834)
+ |...|.+++|+|++.+|++++.|+.|++||+..+... .+ . .+......++|++
T Consensus 236 ~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 315 (355)
T 3vu4_A 236 RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWIS 315 (355)
T ss_dssp CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESS
T ss_pred cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeC
Confidence 4 8999999999999999999999999999999765321 10 0 1122347799999
Q ss_pred CCCEEEEEecCCcEEEeC
Q 003279 817 VNGMVASASHDKCVKIWK 834 (834)
Q Consensus 817 dg~~LaSgs~DG~I~IWd 834 (834)
++++|++++.||.+++|+
T Consensus 316 d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 316 ESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp SSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEE
Confidence 999999999999999985
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=287.50 Aligned_cols=272 Identities=16% Similarity=0.179 Sum_probs=222.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe---EEEEecc-------------------------------------
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEE------------------------------------- 592 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~---~~~~l~~------------------------------------- 592 (834)
.+|.|++|++||++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468999999999977666 47899999999988 5555543
Q ss_pred -----------------CCCCeEEEEECCCCCEE-EEEeCCCeEEEEecC--CCCceeeeec--cCCCCeEEEEEccCCC
Q 003279 593 -----------------HTQWITDVRFSPSLSRL-ATSSADRTVRVWDTE--NPDYSLRTFT--GHSTTVMSLDFHPSKE 650 (834)
Q Consensus 593 -----------------h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl~--s~~~~i~~~~--~h~~~V~sl~fspdg~ 650 (834)
|.+.|++++|+|++++| ++++.||.|+|||+. ++.. +..+. .|...|.+++|+|++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV-LKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC-EEEEEEEECSSCEEEEEECTTSS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce-eeeeecccCCCCceEEEEcCCCC
Confidence 33479999999999996 899999999999998 5543 55554 5778999999999976
Q ss_pred cEEEEEeCCCcEEEEECCCCceee----Eee-cCCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCCeEEEE-EeCCC
Q 003279 651 DLLCSCDNNSEIRYWSINNGSCAG----VFK-CQSGATQMRFQPR---LGRILAAAIENYISILDVETQVCRLK-LQGHK 721 (834)
Q Consensus 651 ~llasgs~Dg~I~lwDl~s~~~i~----~~~-~~~~i~~l~~sp~---g~~ll~~s~dg~I~iwDl~t~~~~~~-l~~h~ 721 (834)
+|++++.+|.|++|++.++.... .+. +...|.+++|+|+ +.+|++++.|+.|++||++++.++.. +.+|.
T Consensus 163 -~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~ 241 (450)
T 2vdu_B 163 -TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK 241 (450)
T ss_dssp -EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS
T ss_pred -EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC
Confidence 66688889999999998877553 333 5678999999999 88999999999999999999987777 55899
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-------------------------cCCCceEEEEEeC
Q 003279 722 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------------------------CTGNKFHSCVFHP 775 (834)
Q Consensus 722 ~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-------------------------~~~~~I~svafsp 775 (834)
..|.+++|+ ++.+|++++ |+.|+|||+.++ .++..+. .....|..++|+|
T Consensus 242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG---KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp SCEEEEEEC-STTEEEEEESSSEEEEEETTTC---CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred CceEEEEEC-CCCEEEEEeCCCeEEEEECCCC---cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 999999999 999999999 999999999988 4455444 2245789999999
Q ss_pred CCCEEEEEE-cCCeEEEEEC--CCC---eEE-EeccCCCCeEEEEEeCCCCEEEEEec-------CCcEEEe
Q 003279 776 TFPSLLVIG-CYETLELWNM--TEN---KTL-TLSAHDKLVSSLAASTVNGMVASASH-------DKCVKIW 833 (834)
Q Consensus 776 dg~~L~sgs-~dg~I~Iwdl--~~~---~~~-~l~~h~~~V~~lafspdg~~LaSgs~-------DG~I~IW 833 (834)
++++|++++ .++.|+||++ .++ +.+ .+..| ..|.+++|+|++ ++++++. +..|.||
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEE
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEE
Confidence 999999999 8999999999 554 444 45566 889999999954 4544432 4557777
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=289.80 Aligned_cols=277 Identities=16% Similarity=0.197 Sum_probs=226.5
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~IWd~~ 582 (834)
.++++++.|+.|.+|....... ....+..+.+|.+.|++++|+| ++++||+|+.||.|+|||+.
T Consensus 48 ~~~~~~~~~g~i~v~~~~~~~~---------------~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 48 ALICEASGGGAFLVLPLGKTGR---------------VDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP 112 (402)
T ss_dssp EEEBCCSSSCCEEEEETTCCEE---------------CCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred EEEEEEcCCCEEEEEECccCCC---------------CCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence 3556788999999996543211 1122445779999999999999 99999999999999999999
Q ss_pred CC-------eEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEecCCCCceeeee--ccCCCCeEEEEEccCCCcE
Q 003279 583 SF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDL 652 (834)
Q Consensus 583 t~-------~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~s~~~~i~~~--~~h~~~V~sl~fspdg~~l 652 (834)
++ +.+..+.+|...|.+++|+|++ .+|++++.|+.|++||+.++.. +..+ ..|...|.+++|+|++. +
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~ 190 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA-VLTLGPDVHPDTIYSVDWSRDGA-L 190 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE-EEEECTTTCCSCEEEEEECTTSS-C
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc-cEEEecCCCCCceEEEEECCCCC-E
Confidence 87 5678889999999999999998 6999999999999999998654 6666 78999999999999876 5
Q ss_pred EEEEeCCCcEEEEECCCCceeeEe-ecCC--CeeEEEEecCCCEEEEE---EcCCeEEEEECCCCeE-EEEE-eCCCCCE
Q 003279 653 LCSCDNNSEIRYWSINNGSCAGVF-KCQS--GATQMRFQPRLGRILAA---AIENYISILDVETQVC-RLKL-QGHKNQV 724 (834)
Q Consensus 653 lasgs~Dg~I~lwDl~s~~~i~~~-~~~~--~i~~l~~sp~g~~ll~~---s~dg~I~iwDl~t~~~-~~~l-~~h~~~I 724 (834)
|++++.|+.|++||+++++.+..+ ..+. .+.++.|+|++.+++++ +.|+.|++||++++.. +... ..|...|
T Consensus 191 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 270 (402)
T 2aq5_A 191 ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGV 270 (402)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSC
T ss_pred EEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCce
Confidence 668889999999999999998887 3333 37999999998888888 6899999999998643 2222 2477889
Q ss_pred EEEEEcCCCCEEEE-Ee-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 725 HSVCWNTSGEYLAS-VS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 725 ~sl~~spdg~~Las-gs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
.+++|+|++.+|++ ++ |+.|++||+.++.. ...+..+. +...|.+++|+|++.++++ .++.+++|++.+++..
T Consensus 271 ~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 271 LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCE 346 (402)
T ss_dssp EEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEeccccccee--cceeEEEEEcCCCcEE
Confidence 99999999999865 54 99999999998753 22333333 5688999999999987654 5669999999887654
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=281.98 Aligned_cols=287 Identities=11% Similarity=0.124 Sum_probs=218.4
Q ss_pred CceEEEEecCCCCCcccCCCcccCCCceEEeccCCC-------CeEEeecCCCCCCCcccccccccCCCeeeeEEEEecC
Q 003279 478 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDD-------NVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 550 (834)
Q Consensus 478 ~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~-------~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~g 550 (834)
+..++.|++++ ++|++|+.|. .|++|.......... ..........+.+
T Consensus 16 PV~sv~fs~dg---------------~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~---------~~~~~~~~~~l~~ 71 (365)
T 4h5i_A 16 PAYGAKFLNND---------------TLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEK---------EQFHILSEFALED 71 (365)
T ss_dssp CEEEEEEEETT---------------EEEEEEECCSSSSSCCEEEEEEEECTTSSSHH---------HHEEEEEEEECCT
T ss_pred CEEEEEEeCCC---------------cEEEEECCCccccCCCCEEEEEEEcCCCccee---------eeeeeeeEEEccC
Confidence 45567777765 6888887654 388886544322100 0011122345789
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-----------CCCcEEEEeCCCCeEE----EEe-----ccCCCCeEEEEECCCCCEEE
Q 003279 551 STSKVESCHFSPDGKLLATGG-----------HDKKAVLWCTESFTVK----STL-----EEHTQWITDVRFSPSLSRLA 610 (834)
Q Consensus 551 H~~~V~sl~fSpdg~~Lasgs-----------~Dg~I~IWd~~t~~~~----~~l-----~~h~~~I~~l~fspdg~~La 610 (834)
|.+.|.+++++ ++.+++|+ .|+.|++|++.+.... ... ..+...+.+++|+|||++|+
T Consensus 72 ~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la 149 (365)
T 4h5i_A 72 NDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAA 149 (365)
T ss_dssp TSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEE
T ss_pred CCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEE
Confidence 99999998876 45677664 4778999987654221 111 23456799999999999987
Q ss_pred EEe--CCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee---cCCCeeEE
Q 003279 611 TSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQM 685 (834)
Q Consensus 611 tgs--~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~---~~~~i~~l 685 (834)
+++ .|++|+|||+.+... +..+ .|...|.+++|+|++. ++++++ ++.+++|+..++..+.... +...+.++
T Consensus 150 ~as~~~d~~i~iwd~~~~~~-~~~~-~~~~~V~~v~fspdg~-~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 225 (365)
T 4h5i_A 150 IASSKVPAIMRIIDPSDLTE-KFEI-ETRGEVKDLHFSTDGK-VVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKI 225 (365)
T ss_dssp EEESCSSCEEEEEETTTTEE-EEEE-ECSSCCCEEEECTTSS-EEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEE
T ss_pred EEECCCCCEEEEeECCCCcE-EEEe-CCCCceEEEEEccCCc-eEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEE
Confidence 655 689999999998654 4444 4778899999999987 566776 5567778877777654432 34458999
Q ss_pred EEecCCCEEEEEEcCC----eEEEEECCCCeE----EEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce
Q 003279 686 RFQPRLGRILAAAIEN----YISILDVETQVC----RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 756 (834)
Q Consensus 686 ~~sp~g~~ll~~s~dg----~I~iwDl~t~~~----~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~ 756 (834)
+|+|++..+++++.++ .+.+||+..... ...+.+|...|++++|+|+|++|++++ |+.|+|||+.++ +
T Consensus 226 ~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~---~ 302 (365)
T 4h5i_A 226 NFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL---S 302 (365)
T ss_dssp EEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT---E
T ss_pred EEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC---c
Confidence 9999999999999887 688899877643 456778999999999999999999999 999999999987 7
Q ss_pred eEEEe-ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003279 757 CIHEL-SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 797 (834)
Q Consensus 757 ~i~~~-~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~ 797 (834)
++..+ .+|...|++++|+|||++|++++.|++|+|||+..+
T Consensus 303 ~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 303 MSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 77764 689999999999999999999999999999999653
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=286.93 Aligned_cols=265 Identities=9% Similarity=0.025 Sum_probs=213.2
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC---------CCCce
Q 003279 559 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---------NPDYS 629 (834)
Q Consensus 559 ~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~---------s~~~~ 629 (834)
.+.+++.+|++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +....
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 345678899999999999999999999888876 567888999988 9999999999999766 33322
Q ss_pred eeeeccCCCCeEEEEEcc--CCCcEEEEEeCCCcEEEEECCCCceeeEee--cCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003279 630 LRTFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISI 705 (834)
Q Consensus 630 i~~~~~h~~~V~sl~fsp--dg~~llasgs~Dg~I~lwDl~s~~~i~~~~--~~~~i~~l~~sp~g~~ll~~s~dg~I~i 705 (834)
.....+|...|.+++|+| ++. ++++++.||.|++||+++++++..+. +...+.+++|+|++.+|++|+.|+.|++
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i 196 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV 196 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 233346778999999999 865 67799999999999999999876653 3456999999999999999999999999
Q ss_pred EECCCCeEE-EEEeC-CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCce--EEEEEeCCCCEEE
Q 003279 706 LDVETQVCR-LKLQG-HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF--HSCVFHPTFPSLL 781 (834)
Q Consensus 706 wDl~t~~~~-~~l~~-h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I--~svafspdg~~L~ 781 (834)
||+++++.+ ..+.. |...|++++|+|++.+|++++|+.|++||+++......+..+..+...+ .+++|+|++.+|+
T Consensus 197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE
T ss_pred EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEE
Confidence 999999877 77887 9999999999999999999997799999999875433333332233333 4699999999999
Q ss_pred EEEc-CCeEEEEECCCCeEE-EeccCCCCeEEEEEeC---CCCEEEEEecCCcEEEe
Q 003279 782 VIGC-YETLELWNMTENKTL-TLSAHDKLVSSLAAST---VNGMVASASHDKCVKIW 833 (834)
Q Consensus 782 sgs~-dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafsp---dg~~LaSgs~DG~I~IW 833 (834)
+++. |+.|++|++.+.... .. .++..++|.+ +...|++++.||.+.++
T Consensus 277 ~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp EEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred EecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence 9998 999999999665432 22 5677788888 77888888888888775
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=286.34 Aligned_cols=245 Identities=18% Similarity=0.315 Sum_probs=210.6
Q ss_pred EEeccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCC---------CceeeeeccCCCCeEEEEEccCCCcEEEEEe
Q 003279 588 STLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENP---------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 657 (834)
Q Consensus 588 ~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~s~---------~~~i~~~~~h~~~V~sl~fspdg~~llasgs 657 (834)
.....|.+.|++++|+|+ +.+|++++.||.|++||+... ...+..+.+|...|++++|+|++..+|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 344579999999999997 789999999999999999862 2346778899999999999999887888999
Q ss_pred CCCcEEEEECCCCce-------eeEe-ecCCCeeEEEEec-CCCEEEEEEcCCeEEEEECCCC---eEEEEEeCCCCCEE
Q 003279 658 NNSEIRYWSINNGSC-------AGVF-KCQSGATQMRFQP-RLGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVH 725 (834)
Q Consensus 658 ~Dg~I~lwDl~s~~~-------i~~~-~~~~~i~~l~~sp-~g~~ll~~s~dg~I~iwDl~t~---~~~~~l~~h~~~I~ 725 (834)
.||.|++||+..+.. ...+ .+...|.+++|+| ++..|++++.|+.|++||++++ ..+..+..|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987432 2233 3456799999999 6778889999999999999987 57777888999999
Q ss_pred EEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCC------
Q 003279 726 SVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTE------ 796 (834)
Q Consensus 726 sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~-~L~sgs~dg~I~Iwdl~~------ 796 (834)
+++|+|++. +|++++ |+.|++||+++.. ..+..+..|...|.+++|+|++. +|++++.|+.|+|||+..
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 359 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence 999999987 677887 9999999999743 56778888999999999999995 588899999999999987
Q ss_pred ---------CeEEEeccCCCCeEEEEEeCCCC-EEEEEecCCcEEEeC
Q 003279 797 ---------NKTLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 834 (834)
Q Consensus 797 ---------~~~~~l~~h~~~V~~lafspdg~-~LaSgs~DG~I~IWd 834 (834)
.......+|...|.+++|+|++. +|++++.||.|+||+
T Consensus 360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 22336678999999999999999 999999999999996
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-29 Score=271.64 Aligned_cols=273 Identities=13% Similarity=0.110 Sum_probs=229.7
Q ss_pred CceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEE
Q 003279 478 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 557 (834)
Q Consensus 478 ~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~s 557 (834)
....+.|++++ .++++|+.|+.|++|...... .......+.+|...|++
T Consensus 13 ~v~~~~~s~~~---------------~~l~~~~~d~~v~iw~~~~~~----------------~~~~~~~~~~~~~~v~~ 61 (342)
T 1yfq_A 13 YISDIKIIPSK---------------SLLLITSWDGSLTVYKFDIQA----------------KNVDLLQSLRYKHPLLC 61 (342)
T ss_dssp CEEEEEEEGGG---------------TEEEEEETTSEEEEEEEETTT----------------TEEEEEEEEECSSCEEE
T ss_pred cEEEEEEcCCC---------------CEEEEEcCCCeEEEEEeCCCC----------------ccccceeeeecCCceEE
Confidence 45666777654 688999999999999654321 11223445589999999
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEeC-CCCeEEEEecc--CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC--------
Q 003279 558 CHFSPDGK-LLATGGHDKKAVLWCT-ESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-------- 625 (834)
Q Consensus 558 l~fSpdg~-~Lasgs~Dg~I~IWd~-~t~~~~~~l~~--h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s-------- 625 (834)
++|+|+++ +|++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| +.+|++++.|+.|++||+.+
T Consensus 62 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 139 (342)
T 1yfq_A 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAV 139 (342)
T ss_dssp EEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred EEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccc
Confidence 99999999 9999999999999999 87755 67788 999999999999 99999999999999999986
Q ss_pred -CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-Ccee---eEeecCCCeeEEEEec-CCCEEEEEEc
Q 003279 626 -PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCA---GVFKCQSGATQMRFQP-RLGRILAAAI 699 (834)
Q Consensus 626 -~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s-~~~i---~~~~~~~~i~~l~~sp-~g~~ll~~s~ 699 (834)
... +..+. |...|.+++|++++ +++++.|+.|++||+++ +... ....+...+.+++|+| ++..+++++.
T Consensus 140 ~~~~-~~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~ 214 (342)
T 1yfq_A 140 KNLN-SNNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI 214 (342)
T ss_dssp EESC-SSSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET
T ss_pred cCCe-eeEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec
Confidence 432 44444 88999999999875 77889999999999998 5432 2233467899999999 9999999999
Q ss_pred CCeEEEEECCCC------eEEEEEeCCCC---------CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003279 700 ENYISILDVETQ------VCRLKLQGHKN---------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 763 (834)
Q Consensus 700 dg~I~iwDl~t~------~~~~~l~~h~~---------~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 763 (834)
||.|++||++.. .....+..|.. .|.+++|+|++.+|++++ |+.|++||+.++ ..+..+..
T Consensus 215 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~ 291 (342)
T 1yfq_A 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR---KKIKNFAK 291 (342)
T ss_dssp TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT---EEEEECCC
T ss_pred CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH---hHhhhhhc
Confidence 999999999876 77778887765 999999999999999998 999999999987 77888888
Q ss_pred C-CCceEEEEEeCCCCEEEEEEcCCe-EEEEE
Q 003279 764 T-GNKFHSCVFHPTFPSLLVIGCYET-LELWN 793 (834)
Q Consensus 764 ~-~~~I~svafspdg~~L~sgs~dg~-I~Iwd 793 (834)
| ...|.+++ |++.+|++++.|+. .+.|.
T Consensus 292 ~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 292 FNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred ccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 8 99999999 99999999999998 54444
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-28 Score=268.01 Aligned_cols=275 Identities=14% Similarity=0.153 Sum_probs=226.6
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEeCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE 582 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~L-asgs~Dg~I~IWd~~ 582 (834)
.++++++.|+.|++|..... ..+..+.+|. .+.+++|+|+|++| ++++.|+.|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~-------------------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN-------------------KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT-------------------EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCC-------------------eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 46788999999999965332 2334555665 49999999999987 566789999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc
Q 003279 583 SFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 661 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 661 (834)
+++.+..+..+. .|.+++|+|++++|++++ .++.|++||+.+++. +..+. +...+.+++|+|+++.++++++.++.
T Consensus 63 ~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~ 139 (391)
T 1l0q_A 63 TNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVK-TGKSPLGLALSPDGKKLYVTNNGDKT 139 (391)
T ss_dssp TTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred CCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeE-EEEEe-CCCCcceEEECCCCCEEEEEeCCCCE
Confidence 999998887665 899999999999886554 679999999998654 44444 44578999999999888789999999
Q ss_pred EEEEECCCCceeeEeecCCCeeEEEEecCCCEEE-EEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 003279 662 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL-AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll-~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs 740 (834)
|++||+.+++.+..+..+..+.+++|+|++++++ +++.++.|++||+++++.+..+. +...+.+++|+|++++|++++
T Consensus 140 v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~ 218 (391)
T 1l0q_A 140 VSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTN 218 (391)
T ss_dssp EEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEE
T ss_pred EEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEe
Confidence 9999999999999998888899999999999885 55567999999999998887776 566899999999999888775
Q ss_pred ----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE-EEEcCCeEEEEECCCCeEE-EeccCC
Q 003279 741 ----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL-VIGCYETLELWNMTENKTL-TLSAHD 806 (834)
Q Consensus 741 ----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~-sgs~dg~I~Iwdl~~~~~~-~l~~h~ 806 (834)
++.|++||+.++ +.+..+..+. .+.+++|+|++++|+ +++.|+.|++||+.+++.+ .+..|.
T Consensus 219 ~~~~~~~v~~~d~~~~---~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~ 286 (391)
T 1l0q_A 219 VDKYFNTVSMIDTGTN---KITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGK 286 (391)
T ss_dssp ECSSCCEEEEEETTTT---EEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred cCcCCCcEEEEECCCC---eEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCc
Confidence 679999999887 6666666544 578999999999885 5567889999999999877 343443
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.1e-31 Score=305.21 Aligned_cols=256 Identities=9% Similarity=0.054 Sum_probs=199.4
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEE----EEeccCCCCeEEEEECCC------CCEEEEEeCCCeEEEEecCCCCc--
Q 003279 561 SPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPS------LSRLATSSADRTVRVWDTENPDY-- 628 (834)
Q Consensus 561 Spdg~~Lasgs~Dg~I~IWd~~t~~~~----~~l~~h~~~I~~l~fspd------g~~Latgs~Dg~I~IWDl~s~~~-- 628 (834)
+|++++|++++.|++|+|||+.+++.. .++.+|.+.|.+++|+|+ +.+||+++.||+|+|||+..+..
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 344455566778899999999876542 456678899999999996 57999999999999999986532
Q ss_pred --------eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-eeeEee-cCCCeeEE--EEecCC-CEEE
Q 003279 629 --------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQM--RFQPRL-GRIL 695 (834)
Q Consensus 629 --------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~-~i~~~~-~~~~i~~l--~~sp~g-~~ll 695 (834)
+...+.+|...|++++|++++ .|++|+.||+|++||++++. +...+. +...|.++ .|++++ ..|+
T Consensus 250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la 327 (524)
T 2j04_B 250 HVFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVS 327 (524)
T ss_dssp SEEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred ccceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEE
Confidence 124677899999999999863 68899999999999999764 334444 46779998 567777 7899
Q ss_pred EEEcCCeEEEEECCCCeEEEEEeCCCC--CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003279 696 AAAIENYISILDVETQVCRLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 772 (834)
Q Consensus 696 ~~s~dg~I~iwDl~t~~~~~~l~~h~~--~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sva 772 (834)
+++.|++|+|||++++++...+.+|.. .|.+++|+|++..|++++ |++|++||++++ .++..+..|...|.+++
T Consensus 328 S~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~---~~~~~l~gH~~~V~sva 404 (524)
T 2j04_B 328 TVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA---FAVHPLVSRETTITAIG 404 (524)
T ss_dssp EEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT---TCCEEEEECSSCEEEEE
T ss_pred EeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc---ccceeeecCCCceEEEE
Confidence 999999999999998876666666653 588999999999999888 889999999987 56667788999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEEEec-----cCCCCeEEEEEeCCCCEE
Q 003279 773 FHPTFPSLLVIGCYETLELWNMTENKTLTLS-----AHDKLVSSLAASTVNGMV 821 (834)
Q Consensus 773 fspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~-----~h~~~V~~lafspdg~~L 821 (834)
|+|++++|++++.|++|++||+..+...... .+...|.+++|+|++..+
T Consensus 405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~ 458 (524)
T 2j04_B 405 VSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY 458 (524)
T ss_dssp CCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEE
T ss_pred eCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeE
Confidence 9999999999999999999998764211111 112257899999999855
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-28 Score=270.85 Aligned_cols=262 Identities=11% Similarity=0.122 Sum_probs=223.4
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEecCCCCceeeeeccCCCCeEEE
Q 003279 565 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 643 (834)
Q Consensus 565 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl 643 (834)
.++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++. +..+..+. .+.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSS-SEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-EEEEECCC-Cccce
Confidence 467888999999999999999999988775 48999999999977 6677899999999987654 55555444 89999
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEE-EEEEcCCeEEEEECCCCeEEEEEeCCCC
Q 003279 644 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI-LAAAIENYISILDVETQVCRLKLQGHKN 722 (834)
Q Consensus 644 ~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~l-l~~s~dg~I~iwDl~t~~~~~~l~~h~~ 722 (834)
+|+|+++.++++++.++.|++||+.+++.+..+..+..+.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+ .
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~ 158 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R 158 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence 999999988888888899999999999999999888899999999999988 56666899999999999998888765 5
Q ss_pred CEEEEEEcCCCCEEE-EEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE---cCCeEEEEECCCC
Q 003279 723 QVHSVCWNTSGEYLA-SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG---CYETLELWNMTEN 797 (834)
Q Consensus 723 ~I~sl~~spdg~~La-sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs---~dg~I~Iwdl~~~ 797 (834)
.+.+++|+|++++|+ ++. ++.|++||++++ ..+..+. +...+.+++|+|++.+|++++ .++.|++||+.++
T Consensus 159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEECCCC---eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 679999999999885 445 889999999887 5555554 456789999999999999988 6889999999999
Q ss_pred eEEEeccCCCCeEEEEEeCCCCEE-EEEecCCcEEEeC
Q 003279 798 KTLTLSAHDKLVSSLAASTVNGMV-ASASHDKCVKIWK 834 (834)
Q Consensus 798 ~~~~l~~h~~~V~~lafspdg~~L-aSgs~DG~I~IWd 834 (834)
+.+........+.+++|+|++++| ++++.|+.|++||
T Consensus 235 ~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 235 KITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred eEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence 887544444568999999999977 6778899999996
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-30 Score=295.03 Aligned_cols=262 Identities=10% Similarity=0.089 Sum_probs=212.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCce
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 629 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~ 629 (834)
.-...|.+++|+|||+++|+++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+.....
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-- 78 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-- 78 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC--
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCce--
Confidence 3456799999999999999999999999 765554 447999999999999998 45555555543211
Q ss_pred eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCC-----CeeEEEEecCCCEEEEEEcCCeEE
Q 003279 630 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-----GATQMRFQPRLGRILAAAIENYIS 704 (834)
Q Consensus 630 i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~-----~i~~l~~sp~g~~ll~~s~dg~I~ 704 (834)
... ..|...|.+++|+|+|. .|++++.||.|++||... ++..+.++. .+.+++|+|+|++|++|+.||.|+
T Consensus 79 ~~~-~~~~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 79 LLN-SQPVCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp SST-TSCSCCEEEEEECSSSS-CEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred Eee-cCCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 122 25688999999999987 566899999999999654 555555332 499999999999999999999999
Q ss_pred EEECCCCe-------EEEEE----eCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEe-ecCCCceEEEE
Q 003279 705 ILDVETQV-------CRLKL----QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFHSCV 772 (834)
Q Consensus 705 iwDl~t~~-------~~~~l----~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~-~~~~~~I~sva 772 (834)
+||+.++. .+.++ .+|..+|.+++|+||| +++++.|+.|++||+..+........+ ..|...|.+++
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK 233 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence 99999874 35666 5678899999999999 544444999999999887432234555 36778999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEEEec-cCCCCeEEEEE--eCCCCEEEEEecCCcEEEeC
Q 003279 773 FHPTFPSLLVIGCYETLELWNMTENKTLTLS-AHDKLVSSLAA--STVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 773 fspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~-~h~~~V~~laf--spdg~~LaSgs~DG~I~IWd 834 (834)
|+ +..|++++ ++.|++||+.+++...+. +|...|.+++| +|++..|++++.||+ ++|.
T Consensus 234 Fs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 234 IV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp EE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred EE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence 99 57788776 699999999999985444 89999999999 999999999999999 8884
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-29 Score=284.22 Aligned_cols=252 Identities=19% Similarity=0.367 Sum_probs=219.2
Q ss_pred EEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCC----------CeEEEEeccCCCCeEEEEECCCCC-EEEEEe
Q 003279 546 QLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLS-RLATSS 613 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpd-g~~Lasgs~Dg~I~IWd~~t----------~~~~~~l~~h~~~I~~l~fspdg~-~Latgs 613 (834)
....+|.+.|++++|+|+ +.+||+++.||.|+|||+.+ ...+..+.+|...|++++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445689999999999997 78999999999999999986 677888899999999999999988 999999
Q ss_pred CCCeEEEEecCCCCc------eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC---ceeeEee-cCCCee
Q 003279 614 ADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFK-CQSGAT 683 (834)
Q Consensus 614 ~Dg~I~IWDl~s~~~------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~---~~i~~~~-~~~~i~ 683 (834)
.||.|++||+..... ....+.+|...|.+++|+|++..+|++++.||.|++||++++ +.+..+. +...+.
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987432 135667899999999999977889999999999999999987 4555553 567899
Q ss_pred EEEEecCCC-EEEEEEcCCeEEEEECCC-CeEEEEEeCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCC-----
Q 003279 684 QMRFQPRLG-RILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSK----- 754 (834)
Q Consensus 684 ~l~~sp~g~-~ll~~s~dg~I~iwDl~t-~~~~~~l~~h~~~I~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~----- 754 (834)
+++|+|++. .+++++.||.|++||+++ ..++..+..|...|.+++|+|++. +|++++ |+.|+|||+.....
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 361 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 361 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence 999999887 688999999999999998 567888889999999999999985 677777 99999999987321
Q ss_pred ------ceeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCC
Q 003279 755 ------GECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTEN 797 (834)
Q Consensus 755 ------~~~i~~~~~~~~~I~svafspdg~-~L~sgs~dg~I~Iwdl~~~ 797 (834)
...+..+..|...|.+++|+|+++ +|++++.|+.|+||++...
T Consensus 362 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 362 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 256777788899999999999999 8999999999999998754
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-28 Score=263.75 Aligned_cols=290 Identities=19% Similarity=0.240 Sum_probs=213.3
Q ss_pred CCceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeE
Q 003279 477 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 556 (834)
Q Consensus 477 ~~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~ 556 (834)
....++.|++++ .++++|+.|+.|++|...... ........+.+|...|+
T Consensus 12 ~~v~~~~~~~~~---------------~~l~~~~~dg~i~iw~~~~~~---------------~~~~~~~~~~~~~~~v~ 61 (351)
T 3f3f_A 12 DLVHDVVYDFYG---------------RHVATCSSDQHIKVFKLDKDT---------------SNWELSDSWRAHDSSIV 61 (351)
T ss_dssp SCEEEEEECSSS---------------SEEEEEETTSEEEEEEECSSS---------------CCEEEEEEEECCSSCEE
T ss_pred cceeEEEEcCCC---------------CEEEEeeCCCeEEEEECCCCC---------------CcceecceeccCCCcEE
Confidence 456667776655 689999999999999665321 12345677889999999
Q ss_pred EEEEcC--CCCEEEEEeCCCcEEEEeCCCC---------eEEEEeccCCCCeEEEEECCC--CCEEEEEeCCCeEEEEec
Q 003279 557 SCHFSP--DGKLLATGGHDKKAVLWCTESF---------TVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDT 623 (834)
Q Consensus 557 sl~fSp--dg~~Lasgs~Dg~I~IWd~~t~---------~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~IWDl 623 (834)
+++|+| |+++|++|+.||.|+|||+.++ +.+..+..|...|.+++|+|+ +.+|++++.|+.|++||+
T Consensus 62 ~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~ 141 (351)
T 3f3f_A 62 AIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 141 (351)
T ss_dssp EEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEEC
T ss_pred EEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecC
Confidence 999999 6999999999999999999887 668888999999999999999 999999999999999999
Q ss_pred CCCCceeeee-------------ccCCCCeEEEEEccC--CCcEEEEEeCCCcEEEEECCCCce--eeEee-cCCCeeEE
Q 003279 624 ENPDYSLRTF-------------TGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSC--AGVFK-CQSGATQM 685 (834)
Q Consensus 624 ~s~~~~i~~~-------------~~h~~~V~sl~fspd--g~~llasgs~Dg~I~lwDl~s~~~--i~~~~-~~~~i~~l 685 (834)
.+... +..+ ..|...|.+++|+|+ ...++++++.|+.+.+|+...++. +..+. +...|.++
T Consensus 142 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 220 (351)
T 3f3f_A 142 LEPSD-LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSI 220 (351)
T ss_dssp SSTTC-TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEE
T ss_pred CChHH-hccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEE
Confidence 87653 2111 267889999999997 345778899999998888887765 33343 45679999
Q ss_pred EEecCC----CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-----CCeEEEEEcCCCCCce
Q 003279 686 RFQPRL----GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-----DELVRVWSIGSGSKGE 756 (834)
Q Consensus 686 ~~sp~g----~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-----Dg~I~IwDl~s~~~~~ 756 (834)
+|+|++ .+|++++.|+.|++||++.+........+...+....+++....++.+. ...+.+|+... ..
T Consensus 221 ~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 297 (351)
T 3f3f_A 221 SWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ---VE 297 (351)
T ss_dssp EECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEE---EE
T ss_pred EECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccccc---cc
Confidence 999998 7899999999999999998766555544444555555555555555544 22344444333 37
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 757 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 757 ~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
.+..+..|...|.+++|+|++.+|++++.|+.|++||+.+++.+
T Consensus 298 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 298 LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp EEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred EEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence 78888899999999999999999999999999999999887544
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-28 Score=263.53 Aligned_cols=288 Identities=16% Similarity=0.225 Sum_probs=232.1
Q ss_pred CCCCceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCC
Q 003279 475 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 554 (834)
Q Consensus 475 ~s~~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~ 554 (834)
......++.|+++.. ...++++|+.|+.|++|...... ......+.+|.+.
T Consensus 38 h~~~v~~~~~~~~~~------------~g~~l~~~~~dg~i~iw~~~~~~-----------------~~~~~~~~~h~~~ 88 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTL------------PGNFLIAGSWANDVRCWEVQDSG-----------------QTIPKAQQMHTGP 88 (368)
T ss_dssp CSSCEEEEEECCTTS------------SSEEEEEEETTSEEEEEEECTTS-----------------CEEEEEEEECSSC
T ss_pred CCCceEEEEEcCCCC------------CceEEEEECCCCcEEEEEcCCCC-----------------ceeEEEeccccCC
Confidence 344667777777631 12688999999999999765421 1123567789999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEE--CCCCCEEEEEeCCCeEEEEecCCCCceeee
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF--SPSLSRLATSSADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~f--spdg~~Latgs~Dg~I~IWDl~s~~~~i~~ 632 (834)
|++++|+|++++|++++.||.|++||+.+++.+. +..|...|.+++| ++++.+|++++.|+.|++||+.++.. +..
T Consensus 89 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~ 166 (368)
T 3mmy_A 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP-MMV 166 (368)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC-SEE
T ss_pred EEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE-EEE
Confidence 9999999999999999999999999999988776 4579999999999 89999999999999999999998664 556
Q ss_pred eccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee---cCCCeeEEEEecCCCE----EEEEEcCCeEEE
Q 003279 633 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGR----ILAAAIENYISI 705 (834)
Q Consensus 633 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~---~~~~i~~l~~sp~g~~----ll~~s~dg~I~i 705 (834)
+..+ ..+.++.+.++ .+++++.++.+++|+++......... ....+.++.+.++... +++++.|+.|++
T Consensus 167 ~~~~-~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i 242 (368)
T 3mmy_A 167 LQLP-ERCYCADVIYP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI 242 (368)
T ss_dssp EECS-SCEEEEEEETT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEE
T ss_pred EecC-CCceEEEecCC---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEE
Confidence 6655 46777777743 56678889999999998765443322 2345677777766554 999999999999
Q ss_pred EECCCC---eEEEEEeCCCC------------CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003279 706 LDVETQ---VCRLKLQGHKN------------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 769 (834)
Q Consensus 706 wDl~t~---~~~~~l~~h~~------------~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 769 (834)
||++.. ..+..+..|.. .|++++|+|++.+|++++ |+.|++||+.++ .++..+..|...|.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~ 319 (368)
T 3mmy_A 243 HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR---TKLKTSEQLDQPIS 319 (368)
T ss_dssp EESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT---EEEEECCCCSSCEE
T ss_pred EecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC---cEEEEecCCCCCce
Confidence 999987 55667777765 799999999999999998 999999999987 78888999999999
Q ss_pred EEEEeCCCCEEEEEEcCCeEE---EEECCCCeEE
Q 003279 770 SCVFHPTFPSLLVIGCYETLE---LWNMTENKTL 800 (834)
Q Consensus 770 svafspdg~~L~sgs~dg~I~---Iwdl~~~~~~ 800 (834)
+++|+|++.+|++++.|+..+ +|+.+....+
T Consensus 320 ~~~~s~~g~~l~~~s~d~~~~~~~~~~~~~~~~i 353 (368)
T 3mmy_A 320 ACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYI 353 (368)
T ss_dssp EEEECTTSSCEEEEECCCSTTCGGGCCTTSCCEE
T ss_pred EEEECCCCCeEEEEecccccccccccCCCcccee
Confidence 999999999999999988444 4444444444
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=306.72 Aligned_cols=252 Identities=20% Similarity=0.313 Sum_probs=214.6
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCeEEEEeccCCCCeEEEEECCC--CCEEEEEeCCCeEEE
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV 620 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~--t~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~I 620 (834)
+.++.+|.+.|++++|+|++++|++|+.||.|+|||+. +++.+..+.+|.+.|++++|+++ +.+|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 35678999999999999999999999999999999998 56778889999999999999988 999999999999999
Q ss_pred EecCCCCc-eeeeeccCCCCeEEEEEccCC-CcEEEEEeCCCcEEEEECCCCcee---eEeecCCCeeEEEEec------
Q 003279 621 WDTENPDY-SLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCA---GVFKCQSGATQMRFQP------ 689 (834)
Q Consensus 621 WDl~s~~~-~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~lwDl~s~~~i---~~~~~~~~i~~l~~sp------ 689 (834)
||+.++.. .+..+.+|...|.+++|+|++ ..++++|+.||.|++||++++... ....+...+.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 99998642 467778899999999999982 347779999999999999887332 2233567899999999
Q ss_pred -------CCCEEEEEEcCCeEEEEECCCC----eEEEEEeCCCCCEEEEEEcCC---CCEEEEEe-CCeEEEEEcCCCCC
Q 003279 690 -------RLGRILAAAIENYISILDVETQ----VCRLKLQGHKNQVHSVCWNTS---GEYLASVS-DELVRVWSIGSGSK 754 (834)
Q Consensus 690 -------~g~~ll~~s~dg~I~iwDl~t~----~~~~~l~~h~~~I~sl~~spd---g~~Lasgs-Dg~I~IwDl~s~~~ 754 (834)
++..+++++.||.|++||++++ .....+.+|...|++++|+|+ +.+|++++ |+.|++||+.++..
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~ 241 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 241 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence 5899999999999999999876 667788899999999999999 89999999 99999999988632
Q ss_pred c--eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 755 G--ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 755 ~--~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
. ..+.....+...|.+++|+|++.+|++++.||.|++||+..
T Consensus 242 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred cceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 1 12333445778899999999999999999999999999874
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=291.16 Aligned_cols=245 Identities=10% Similarity=0.116 Sum_probs=205.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCC-----CeEEEEECCCCCEEEEEeCCCeEEEEecC
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-----WITDVRFSPSLSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~-----~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 624 (834)
.|...|.+|+|||||++||+++.||.|+|||.+. ++..+. |.. .|.+++|+|||++||+|+.||+|+|||+.
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 6688999999999999999999999999999654 666677 665 49999999999999999999999999999
Q ss_pred CCCc------eeeee----ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCcee---eEee--cCCCeeEEEEec
Q 003279 625 NPDY------SLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFK--CQSGATQMRFQP 689 (834)
Q Consensus 625 s~~~------~i~~~----~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i---~~~~--~~~~i~~l~~sp 689 (834)
++.. .+..+ .+|...|.+++|+|++ +++++.|+.|++||+..+... ..+. +...|.+++|+
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs- 235 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV- 235 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-
Confidence 8653 34555 6788899999999997 557788999999999887742 3453 34679999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEE--cCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCC
Q 003279 690 RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCW--NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN 766 (834)
Q Consensus 690 ~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~--spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~ 766 (834)
+..+++++ ++.|++||+.++.......+|...|.+++| +|++..|+++. ||+ ++|...
T Consensus 236 -g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d---------------- 296 (588)
T 2j04_A 236 -DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED---------------- 296 (588)
T ss_dssp -TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------------
T ss_pred -CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------------
Confidence 57888776 699999999998875545479999999999 99999999999 889 999976
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEec
Q 003279 767 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 826 (834)
Q Consensus 767 ~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~ 826 (834)
.+.++|++..+++. |+++++|+...+....+ .+...|.+++|+|||+++|+++.
T Consensus 297 ---~~~~spd~~l~a~~--d~~v~lW~~~g~~l~~~-~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 ---ELHVTADNIIAPYL--EKKFKKWSTIWNEFNNY-ETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ---SEEEECCCSSHHHH--HHHHHHTTTTTTSSSSS-CCEEEEEEEEECTTSSEEEEEEE
T ss_pred ---cEEECCCceEEEEc--CCEEEEEECCCCceeee-ccceEEEEEEECCCCCEEEEEEe
Confidence 15699999866664 89999999876653333 44677999999999999999874
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=276.84 Aligned_cols=261 Identities=15% Similarity=0.137 Sum_probs=177.1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE-----EeccCCCCeEEEEECC--------CCCEEEEEeCC
Q 003279 549 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-----TLEEHTQWITDVRFSP--------SLSRLATSSAD 615 (834)
Q Consensus 549 ~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~-----~l~~h~~~I~~l~fsp--------dg~~Latgs~D 615 (834)
..|...+....+++++.+||+|+.|++|+|||+.++.... .+.+|.+.|++|+|+| |+++||+|+.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 3455556666677788899999999999999999876543 3578999999999997 78999999999
Q ss_pred CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCC-CeeEEEEecCCCEE
Q 003279 616 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRI 694 (834)
Q Consensus 616 g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~-~i~~l~~sp~g~~l 694 (834)
++|+|||+.++.. +..+..|...|.+++|+|++..+|++++.|+.|++||+++++......... .....++
T Consensus 166 ~tv~~Wd~~~~~~-~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~------- 237 (393)
T 4gq1_A 166 CTLIIWRLTDEGP-ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLL------- 237 (393)
T ss_dssp SEEEEEEEETTEE-EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSE-------
T ss_pred CeEEEEECCCCce-eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEE-------
Confidence 9999999987654 566677889999999999988889999999999999999887655443211 1110001
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEc-CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE---
Q 003279 695 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN-TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH--- 769 (834)
Q Consensus 695 l~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~s-pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~--- 769 (834)
. ++...........+|...|.++.|+ +++..|++++ |+.+++||+..+.. ...+..+...+.
T Consensus 238 -s---------~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~---~~~l~~~~~~~~~~~ 304 (393)
T 4gq1_A 238 -T---------LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND---YNEISDSTMKLGPKN 304 (393)
T ss_dssp -E---------EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------C
T ss_pred -e---------cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC---CceEeeecCccccEE
Confidence 0 1111111122234688899999987 7999999999 99999999987632 222222222222
Q ss_pred ---------------EEEEeC-CC-CEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcE
Q 003279 770 ---------------SCVFHP-TF-PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV 830 (834)
Q Consensus 770 ---------------svafsp-dg-~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I 830 (834)
.+.|++ .+ .++++++.|+.|+|||+.+++.. ....|...|.+++|+|||++||++++||.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~ 383 (393)
T 4gq1_A 305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVL 383 (393)
T ss_dssp CSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred EccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 223333 23 34566677999999999988766 567889999999999999999999988853
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=298.36 Aligned_cols=247 Identities=21% Similarity=0.370 Sum_probs=211.3
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC-ceeeeeccCCCCeEEEEEccCC-CcEEEEEeCCCcEEEE
Q 003279 588 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYW 665 (834)
Q Consensus 588 ~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~-~~i~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~lw 665 (834)
..+.+|.+.|++++|+|++++|++|+.||.|+|||+..+. ..+..+.+|...|++++|+++. ..+|++|+.||.|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 4678999999999999999999999999999999998432 3467788999999999999872 3477899999999999
Q ss_pred ECCCCc--eeeEee-cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCC--eEEEEEeCCCCCEEEEEEcC-------
Q 003279 666 SINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNT------- 731 (834)
Q Consensus 666 Dl~s~~--~i~~~~-~~~~i~~l~~sp~--g~~ll~~s~dg~I~iwDl~t~--~~~~~l~~h~~~I~sl~~sp------- 731 (834)
|+.+++ .+..+. +...|.+++|+|+ +..+++++.||.|++||++++ .....+.+|...|.+++|+|
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 999886 444443 5678999999999 999999999999999999887 34556778999999999999
Q ss_pred ------CCCEEEEEe-CCeEEEEEcCCCCCc-eeEEEeecCCCceEEEEEeCC---CCEEEEEEcCCeEEEEECCCCe--
Q 003279 732 ------SGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTGNKFHSCVFHPT---FPSLLVIGCYETLELWNMTENK-- 798 (834)
Q Consensus 732 ------dg~~Lasgs-Dg~I~IwDl~s~~~~-~~i~~~~~~~~~I~svafspd---g~~L~sgs~dg~I~Iwdl~~~~-- 798 (834)
++.+|++++ ||.|++||++++... .++..+..|...|.+++|+|+ +.+|++++.|+.|++||+.++.
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~ 242 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 242 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc
Confidence 588899988 999999999876432 456678889999999999999 8999999999999999998873
Q ss_pred ----EEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 799 ----TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 799 ----~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
......|...|++++|+|++.+|++|+.||.|+|||
T Consensus 243 ~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp CBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred ceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence 224456889999999999999999999999999996
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-26 Score=260.77 Aligned_cols=245 Identities=10% Similarity=0.047 Sum_probs=204.2
Q ss_pred ecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEeCC--CCeEEEEec--cCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 548 IPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE--SFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 548 l~gH~~~V~sl~fSpdg~~L-asgs~Dg~I~IWd~~--t~~~~~~l~--~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
..+|.+.|++++|+|++++| ++|+.||.|+|||+. +++.+..+. .|...|++++|+|++.+|++++.||.|++|+
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID 177 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 45788899999999999996 899999999999999 888888776 6778999999999999999999999999999
Q ss_pred cCCCCc---eeeeeccCCCCeEEEEEccC--CCcEEEEEeCCCcEEEEECCCCceeeEee--cCCCeeEEEEecCCCEEE
Q 003279 623 TENPDY---SLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRIL 695 (834)
Q Consensus 623 l~s~~~---~i~~~~~h~~~V~sl~fspd--g~~llasgs~Dg~I~lwDl~s~~~i~~~~--~~~~i~~l~~sp~g~~ll 695 (834)
+.+... ....+.+|...|.+++|+|+ +..+|++++.|+.|++||+++++++..+. +...|.+++|+ ++.+|+
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~ 256 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLL 256 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEE
T ss_pred cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEE
Confidence 987553 22367789999999999998 23477799999999999999998887643 56789999999 999999
Q ss_pred EEEcCCeEEEEECCCCeEEEEEeC-------------------------CCCCEEEEEEcCCCCEEEEEe--CCeEEEEE
Q 003279 696 AAAIENYISILDVETQVCRLKLQG-------------------------HKNQVHSVCWNTSGEYLASVS--DELVRVWS 748 (834)
Q Consensus 696 ~~s~dg~I~iwDl~t~~~~~~l~~-------------------------h~~~I~sl~~spdg~~Lasgs--Dg~I~IwD 748 (834)
+++.|+.|++||+++++++..+.. ....|.+++|+|++.+|++++ |+.|+||+
T Consensus 257 s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~ 336 (450)
T 2vdu_B 257 SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE 336 (450)
T ss_dssp EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 999999999999999998888763 345799999999999999887 88999999
Q ss_pred c--CCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-------CCeEEEEECC
Q 003279 749 I--GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-------YETLELWNMT 795 (834)
Q Consensus 749 l--~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~-------dg~I~Iwdl~ 795 (834)
+ ..+.....+..+..+ ..|.+++|+|++ .+++++. +..|.+|.+.
T Consensus 337 ~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 337 MSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp ECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEE
T ss_pred eccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEE
Confidence 9 554444666777776 889999999954 4444433 3457777653
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-26 Score=264.70 Aligned_cols=307 Identities=10% Similarity=0.061 Sum_probs=247.8
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC-
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCT- 581 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~-gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~- 581 (834)
.++++++.|+.|.+|+.... ..+.++. +|. +.+++|+|||++|++++.|+.|++||+
T Consensus 150 ~~~vs~~~d~~V~v~D~~t~-------------------~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~ 208 (543)
T 1nir_A 150 LFSVTLRDAGQIALVDGDSK-------------------KIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLW 208 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTC-------------------CEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred EEEEEEcCCCeEEEEECCCc-------------------eEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECc
Confidence 57788888999999954322 1234455 443 899999999999999999999999999
Q ss_pred -CCCeEEEEeccCCCCeEEEEECC----CCCEEEEEeC-CCeEEEEecCCCCceeeeecc----------C-CCCeEEEE
Q 003279 582 -ESFTVKSTLEEHTQWITDVRFSP----SLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------H-STTVMSLD 644 (834)
Q Consensus 582 -~t~~~~~~l~~h~~~I~~l~fsp----dg~~Latgs~-Dg~I~IWDl~s~~~~i~~~~~----------h-~~~V~sl~ 644 (834)
.+++.+.++. +...+..++|+| |+++|++++. +++|.|||..+.+. +..+.. | ...+.++.
T Consensus 209 ~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~-~~~i~~~g~~~~~~~~~~~~~v~~i~ 286 (543)
T 1nir_A 209 AKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAII 286 (543)
T ss_dssp SSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEEE
T ss_pred CCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc-ceeecccCcccCccccccCCceEEEE
Confidence 8899998887 455689999999 9999999885 89999999987654 444433 2 23789999
Q ss_pred EccCCCcEEEEEeCCCcEEEEECCCCceee--EeecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeC--
Q 003279 645 FHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG-- 719 (834)
Q Consensus 645 fspdg~~llasgs~Dg~I~lwDl~s~~~i~--~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~-- 719 (834)
++|++..++++...++.|.+||+.+.+.+. .+.....+..+.|+|+++++++++. ++.|.+||+.+++++..+..
T Consensus 287 ~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~ 366 (543)
T 1nir_A 287 ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 366 (543)
T ss_dssp ECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred ECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC
Confidence 999999999999999999999998876554 5555667889999999998887765 78999999999999888874
Q ss_pred --CCCCEEEEEEcCC-CCEEEEEe--CCeEEEEEcCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEEEEE------
Q 003279 720 --HKNQVHSVCWNTS-GEYLASVS--DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIG------ 784 (834)
Q Consensus 720 --h~~~I~sl~~spd-g~~Lasgs--Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I~svafspdg~~L~sgs------ 784 (834)
|......+ ++|+ +.+++++. |++|.|||+.+... .+++.++..+...+..++|+|++++|++++
T Consensus 367 ~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~ 445 (543)
T 1nir_A 367 TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA 445 (543)
T ss_dssp SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSH
T ss_pred CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCc
Confidence 55444443 4676 66677764 78999999987321 478999999888889999999999999987
Q ss_pred -cCCeEEEEECCCCeEE-Ee---------ccCCCCeEEEEEeCCCCEEEEEe-----cCCcEEEeC
Q 003279 785 -CYETLELWNMTENKTL-TL---------SAHDKLVSSLAASTVNGMVASAS-----HDKCVKIWK 834 (834)
Q Consensus 785 -~dg~I~Iwdl~~~~~~-~l---------~~h~~~V~~lafspdg~~LaSgs-----~DG~I~IWd 834 (834)
.+++|.+||+.+++.. .. ..+...+..++|+|+|+.|+++. .|+.|.|||
T Consensus 446 ~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 446 RISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp HHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred ccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence 2679999999988755 32 35678899999999999888763 379999997
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-27 Score=257.94 Aligned_cols=245 Identities=9% Similarity=0.024 Sum_probs=188.0
Q ss_pred EEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEe
Q 003279 578 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 657 (834)
Q Consensus 578 IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs 657 (834)
||++.+...+..+..|...|++++|+||+++|++|+.++ ++|||+.+... .... +...+..+++.++++.++++++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-IMSQ--EMRHLSKVRMLHRTNYVAFVTG 78 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-EEEE--ECSCCCEEEECTTSSEEEEECS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-eeee--ecCCeEEEEEcCCCCEEEEEEC
Confidence 566777777777889999999999999999999998775 78999986543 2222 2235888889988887777888
Q ss_pred CCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEE
Q 003279 658 NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYL 736 (834)
Q Consensus 658 ~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spdg~~L 736 (834)
.|+.|++||+.+++++..+.+...+.++.++++ .+ +.+.++.|++||+.++ +.+..+.. ....+++++ .++
T Consensus 79 ~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~--~~-~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~l 150 (355)
T 3vu4_A 79 VKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE--FI-VVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLL 150 (355)
T ss_dssp STTEEEEEETTTTEEEEEEECSSCEEEEEECSS--EE-EEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEE
T ss_pred CccEEEEEECCCCcEEEEEECCCceEEEEEcCC--EE-EEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEE
Confidence 899999999999999999999899999999876 33 3346899999999987 55555443 444566777 666
Q ss_pred EEE--e-CCeEEEEEcCCCCCc------------e-eEEEeecCCCceEEEEEeCCCCEEEEEEcCCe-EEEEECCCCeE
Q 003279 737 ASV--S-DELVRVWSIGSGSKG------------E-CIHELSCTGNKFHSCVFHPTFPSLLVIGCYET-LELWNMTENKT 799 (834)
Q Consensus 737 asg--s-Dg~I~IwDl~s~~~~------------~-~i~~~~~~~~~I~svafspdg~~L~sgs~dg~-I~Iwdl~~~~~ 799 (834)
+++ + ||.|++||+.++... . ++..+..|...|.+++|+|++.+|++++.|++ |++||+.+++.
T Consensus 151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~ 230 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL 230 (355)
T ss_dssp EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 664 4 899999999875310 1 26778899999999999999999999999998 99999999988
Q ss_pred E-Eec-c-CCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 800 L-TLS-A-HDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 800 ~-~l~-~-h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+ .+. + |...|.+++|+|++++|++++.|++|+|||
T Consensus 231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE 268 (355)
T ss_dssp EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence 7 454 4 999999999999999999999999999996
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-25 Score=250.87 Aligned_cols=274 Identities=10% Similarity=0.105 Sum_probs=224.8
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
...++++++.|+.|.+|........ .......+.+|.+.|.+++|+++++++++++.|+.|++||+
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~g~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~ 198 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINSGQTV--------------RLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDL 198 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTTCCEE--------------EECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEET
T ss_pred CCeEEEEeCCCCeEEEEECCCCeEe--------------eecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEEC
Confidence 3467788888889999965432100 00011145689999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEe---
Q 003279 582 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--- 657 (834)
Q Consensus 582 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs--- 657 (834)
++++.+..+..|...+.+++|+|+++++++++ .|+.|++||+.++.. +..+.. ...+.+++|+|++..+++++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~ 276 (433)
T 3bws_A 199 KTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE-IRKTDK-IGLPRGLLLSKDGKELYIAQFSAS 276 (433)
T ss_dssp TTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEECCC-CSEEEEEEECTTSSEEEEEEEESC
T ss_pred CCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE-EEEecC-CCCceEEEEcCCCCEEEEEECCCC
Confidence 99999999999999999999999999886554 799999999987653 444444 456999999999886664443
Q ss_pred ----CCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEE-EcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCC
Q 003279 658 ----NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 732 (834)
Q Consensus 658 ----~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~-s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spd 732 (834)
.|+.|++||+.+++.+..+.+...+.+++|+|+++.++++ +.++.|++||+.+++.+..+. +...+.+++|+|+
T Consensus 277 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~d 355 (433)
T 3bws_A 277 NQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPD 355 (433)
T ss_dssp TTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTT
T ss_pred ccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCC
Confidence 5889999999999988888777789999999999876555 678999999999998888876 7788999999999
Q ss_pred CCEEEEEe-C---------------CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 003279 733 GEYLASVS-D---------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 795 (834)
Q Consensus 733 g~~Lasgs-D---------------g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~-dg~I~Iwdl~ 795 (834)
+++|++++ + |.|++||+.++ +.+..+.. ...+.+++|+|++++|++++. |+.|++|++.
T Consensus 356 g~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 356 GKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp SSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred CCEEEEEecCCCccccccccccccceEEEEEECCCC---cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 99888876 2 49999999887 56666655 557899999999999998886 9999999986
Q ss_pred C
Q 003279 796 E 796 (834)
Q Consensus 796 ~ 796 (834)
.
T Consensus 432 ~ 432 (433)
T 3bws_A 432 G 432 (433)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-26 Score=251.11 Aligned_cols=262 Identities=11% Similarity=0.088 Sum_probs=200.9
Q ss_pred CCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 003279 501 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 580 (834)
Q Consensus 501 ~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd 580 (834)
..+.++++|+.|+.|++|....... .. .+. ...|.++.|+|+ |++++.|++|++|+
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~----------------~~---~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~ 101 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKT----------------IT---TIT--TPNPRTGGEHPA---IISRGPCNRLLLLY 101 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSC----------------EE---EEE--EECCCTTCCCCS---EEEECSTTEEEEEE
T ss_pred CCCCEEEEECCCCcEEEEECCCCcE----------------EE---EEe--cCCceeeeeCCc---eEEecCCCeEEEEE
Confidence 3457899999999999997644311 11 111 345778888888 99999999999996
Q ss_pred CC---------CCeEEEEec-cCCCCeEEEEECC--CCCEEEEEeCCCeEEEEecCCCCceeeee-ccCCCCeEEEEEcc
Q 003279 581 TE---------SFTVKSTLE-EHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHP 647 (834)
Q Consensus 581 ~~---------t~~~~~~l~-~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IWDl~s~~~~i~~~-~~h~~~V~sl~fsp 647 (834)
.. +++.+..+. .|.+.|.+++|+| ++++|++++.||+|++||+.++.. +... ..|...|.+++|+|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~p 180 (343)
T 3lrv_A 102 PGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLHK 180 (343)
T ss_dssp TTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEECT
T ss_pred ccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEECC
Confidence 65 455444443 6778999999999 999999999999999999998765 4444 44566899999999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCcee-eEeec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC---CC
Q 003279 648 SKEDLLCSCDNNSEIRYWSINNGSCA-GVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---HK 721 (834)
Q Consensus 648 dg~~llasgs~Dg~I~lwDl~s~~~i-~~~~~--~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~---h~ 721 (834)
++. +|++|+.||.|++||+++++.+ ..+.. ...|.+++|+|++.+|++++ ++.|++||+++++.+..+.. |.
T Consensus 181 dg~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~ 258 (343)
T 3lrv_A 181 DSL-LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPE 258 (343)
T ss_dssp TSC-EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC--
T ss_pred CCC-EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccccc
Confidence 976 7779999999999999999877 55554 67899999999999999999 55999999998866544432 33
Q ss_pred CCEE--EEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC---CCCEEEEEEcCCeEEEEEC
Q 003279 722 NQVH--SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP---TFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 722 ~~I~--sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp---dg~~L~sgs~dg~I~Iwdl 794 (834)
..+. +++|+|++++|++++ |+.|+||++...... . .. ..+..++|.+ +...+++++.|+.+.++-.
T Consensus 259 ~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~--~-~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 259 FKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN--W-TK----DEESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp ---CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS--E-EE----EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred ccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc--e-Ee----cCceeEecCccccccceeEEEecCCceEEEEe
Confidence 3443 699999999999966 889999999765321 1 11 4567788888 8889999999998888754
Q ss_pred CC
Q 003279 795 TE 796 (834)
Q Consensus 795 ~~ 796 (834)
..
T Consensus 332 ~~ 333 (343)
T 3lrv_A 332 TN 333 (343)
T ss_dssp CS
T ss_pred cC
Confidence 43
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.1e-25 Score=237.95 Aligned_cols=285 Identities=13% Similarity=0.115 Sum_probs=197.7
Q ss_pred eeeeEEEEecCCCCC----eEEEEEcCCCC---EEEEEeCCCcEEEEeCCCC---eEEEEeccCCCCeEEEEECCCCCEE
Q 003279 540 FTFTEFQLIPASTSK----VESCHFSPDGK---LLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRL 609 (834)
Q Consensus 540 ~~~~~~~~l~gH~~~----V~sl~fSpdg~---~Lasgs~Dg~I~IWd~~t~---~~~~~l~~h~~~I~~l~fspdg~~L 609 (834)
..+.++..|+...+. |.++-|-.-|- .++++++ ..|++|+..++ +.++++..|+.+|..|.|.||..-|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 101 (356)
T 2w18_A 23 GNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNL 101 (356)
T ss_dssp -CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSC
T ss_pred ceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccce
Confidence 345556666655443 45565654333 5677775 79999999988 8999999999999999999964322
Q ss_pred E-EEeCC---CeEEEEecCCC--C-ceeeeeccCCCCeEEEEEccCCCcEEEEEe--CCCcEEEEEC-CCCceeeEee-c
Q 003279 610 A-TSSAD---RTVRVWDTENP--D-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSI-NNGSCAGVFK-C 678 (834)
Q Consensus 610 a-tgs~D---g~I~IWDl~s~--~-~~i~~~~~h~~~V~sl~fspdg~~llasgs--~Dg~I~lwDl-~s~~~i~~~~-~ 678 (834)
+ ++-.. +.|+..-+... . .......+|...|..+ ++ ..++.+++ .|+.|++|++ .+++.+..+. +
T Consensus 102 ~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~-g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~ 177 (356)
T 2w18_A 102 VCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TK-RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLM 177 (356)
T ss_dssp EEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TT-TEEEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred eeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CC-CcEEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence 2 22111 11221111111 0 1112223344445444 44 44665543 5999999999 4477666555 4
Q ss_pred CCCeeEEEEec---CCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC---CCEEEEEEcCCCCEE------------EEEe
Q 003279 679 QSGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLKLQGHK---NQVHSVCWNTSGEYL------------ASVS 740 (834)
Q Consensus 679 ~~~i~~l~~sp---~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~---~~I~sl~~spdg~~L------------asgs 740 (834)
...+..++|++ ++..|++++.|++|+|||+++++++.++.+|. ..+.+++|+|+|.++ ++|+
T Consensus 178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs 257 (356)
T 2w18_A 178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRS 257 (356)
T ss_dssp CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------
T ss_pred CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence 56688889999 77999999999999999999999999998754 367788999999987 4456
Q ss_pred -CCeEEEEEcCCCCCceeEEEe-----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeE-EE
Q 003279 741 -DELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVS-SL 812 (834)
Q Consensus 741 -Dg~I~IwDl~s~~~~~~i~~~-----~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~-~l 812 (834)
|++|++||..++ +.+..+ .+|...+.+..++ +..+++++.|++|+|||+.+++.+ .+.+|...+. ++
T Consensus 258 ~D~tIklWd~~tg---k~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~v 332 (356)
T 2w18_A 258 PVFQLIVINPKTT---LSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFV 332 (356)
T ss_dssp CCEEEEEEETTTT---EEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEE
T ss_pred CCcEEEEEECCCC---EEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEE
Confidence 889999999987 555443 2444445444444 778999999999999999999988 6667877655 68
Q ss_pred EEeCCCCEEEEEecCCcEEEeC
Q 003279 813 AASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 813 afspdg~~LaSgs~DG~I~IWd 834 (834)
+|+|||++|++|+.|++|+|||
T Consensus 333 afSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 333 KWSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp EECSSSSEEEEECTTSCEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEec
Confidence 9999999999999999999997
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-25 Score=251.83 Aligned_cols=265 Identities=13% Similarity=0.078 Sum_probs=217.9
Q ss_pred EEecCCCCCeEEEEEcC--------------CCCEEEEEeCC------CcEEEEeCCCCeEEEEeccCCCCeEEEEECCC
Q 003279 546 QLIPASTSKVESCHFSP--------------DGKLLATGGHD------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 605 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSp--------------dg~~Lasgs~D------g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspd 605 (834)
..+.+|...|.++++++ .+..|++++.+ +.|++||++. .....+..|...|.+++|+||
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spd 189 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPD 189 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTT
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCC
Confidence 45678888888887775 25666666654 7999999974 456677789999999999999
Q ss_pred CCEEEEEeCCC---eEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc--EEEEECCCCceeeEeecCC
Q 003279 606 LSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQS 680 (834)
Q Consensus 606 g~~Latgs~Dg---~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~--I~lwDl~s~~~i~~~~~~~ 680 (834)
+++|++++.++ .|++||+.+++. ..+..|...+.+++|+|+++.++++++.++. |++||+.+++......+..
T Consensus 190 g~~la~~s~~~~~~~i~~~d~~tg~~--~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~ 267 (415)
T 2hqs_A 190 GSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS 267 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTTCCE--EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSS
T ss_pred CCEEEEEEecCCCcEEEEEECCCCcE--EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCC
Confidence 99999999885 999999998653 4567788899999999999988878876664 9999999988765555667
Q ss_pred CeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C---CeEEEEEcCCCC
Q 003279 681 GATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D---ELVRVWSIGSGS 753 (834)
Q Consensus 681 ~i~~l~~sp~g~~ll~~s~d-g--~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-D---g~I~IwDl~s~~ 753 (834)
.+.+++|+|++++|++++.+ + .|++||+.+++. ..+..+...+.+++|+|+|++|++++ + ..|++||+.++.
T Consensus 268 ~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 268 NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred cccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 79999999999999988864 4 788889988764 34555777899999999999999887 4 489999999873
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeEEEeccCCCCeEEEEEeCCCC
Q 003279 754 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNG 819 (834)
Q Consensus 754 ~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg---~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~ 819 (834)
. ..+..+. .+.+++|+|+|++|++++.++ .|++||+.++....+..|.+.|.+++|+|...
T Consensus 347 ---~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 347 ---V-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ---E-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCCCC
T ss_pred ---E-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCccccccc
Confidence 3 3344443 889999999999999988877 89999999888888999999999999999653
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=251.92 Aligned_cols=235 Identities=11% Similarity=0.111 Sum_probs=178.4
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcC--------CCCEEEEEeCC
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--------DGKLLATGGHD 573 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSp--------dg~~Lasgs~D 573 (834)
...++++|+.|++|++|...... ......+..+.+|.+.|++++|+| |+++||+|+.|
T Consensus 100 ~~~~las~~~d~~v~lw~~~~~~--------------~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 100 YSLFLACVCQDNTVRLIITKNET--------------IITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEETTE--------------EEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred CCCEEEEEeCCCcEEEEECCCCc--------------cceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 44689999999999999654321 112234556889999999999998 89999999999
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEecCCCCcee----------------------
Q 003279 574 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSL---------------------- 630 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~s~~~~i---------------------- 630 (834)
++|+|||+.++..+..+..|...|.+++|+|++ .+|++++.|++|++||+.++....
T Consensus 166 ~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 166 CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 999999999988888888999999999999987 489999999999999998754311
Q ss_pred --eeeccCCCCeEEEEEc-cCCCcEEEEEeCCCcEEEEECCCCceeeEeec-------------------CCCeeEEEEe
Q 003279 631 --RTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------------------QSGATQMRFQ 688 (834)
Q Consensus 631 --~~~~~h~~~V~sl~fs-pdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-------------------~~~i~~l~~s 688 (834)
....+|...|.++.|+ +++. .+++++.|+.|++||+..+.....+.. ........++
T Consensus 246 ~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp ------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred eeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence 1224678889999997 5655 677999999999999987765443321 1112223344
Q ss_pred c-CCCE-EEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003279 689 P-RLGR-ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGS 751 (834)
Q Consensus 689 p-~g~~-ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s 751 (834)
+ .++. +++++.|+.|++||+.++.+...+..|...|.+++|+|||++|++++++.+.+|.+..
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~g 389 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLMG 389 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEGG
T ss_pred cCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEeC
Confidence 4 3344 4556679999999999998888888899999999999999999999988888887643
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-25 Score=249.32 Aligned_cols=273 Identities=15% Similarity=0.172 Sum_probs=219.7
Q ss_pred CCeEEEEEcCCCC-EEEEEe----CCC----cEEEEeC--CCCeEE--EEeccCCCCeEEEEECC--------------C
Q 003279 553 SKVESCHFSPDGK-LLATGG----HDK----KAVLWCT--ESFTVK--STLEEHTQWITDVRFSP--------------S 605 (834)
Q Consensus 553 ~~V~sl~fSpdg~-~Lasgs----~Dg----~I~IWd~--~t~~~~--~~l~~h~~~I~~l~fsp--------------d 605 (834)
..|....|.+.|. ++++|+ .|| .|+|||+ .+++.+ ..+.+|...+..+++++ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 4677888988775 566776 467 8999999 888877 55888988888877764 2
Q ss_pred CCEEEEEeCC------CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC---cEEEEECCCCceeeEe
Q 003279 606 LSRLATSSAD------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS---EIRYWSINNGSCAGVF 676 (834)
Q Consensus 606 g~~Latgs~D------g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg---~I~lwDl~s~~~i~~~ 676 (834)
+..++.++.+ +.|++||+.... ...+..|...|.+++|+|+++.++ +++.++ .|++||+.++++....
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~--~~~l~~~~~~v~~~~~Spdg~~la-~~s~~~~~~~i~~~d~~tg~~~~l~ 219 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN--QFVVHRSPQPLMSPAWSPDGSKLA-YVTFESGRSALVIQTLANGAVRQVA 219 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS--CEEEEEESSCEEEEEECTTSSEEE-EEECTTSSCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC--CEEEeCCCCcceeeEEcCCCCEEE-EEEecCCCcEEEEEECCCCcEEEee
Confidence 5666666654 799999998533 577778999999999999988555 555554 9999999999887666
Q ss_pred ecCCCeeEEEEecCCCEEEEE-EcCC--eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEc
Q 003279 677 KCQSGATQMRFQPRLGRILAA-AIEN--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSI 749 (834)
Q Consensus 677 ~~~~~i~~l~~sp~g~~ll~~-s~dg--~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg--~I~IwDl 749 (834)
.+...+.+++|+|+++.|++. +.++ .|++||+++++. ..+..|...+.+++|+|||++|++++ ++ .|++||+
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~ 298 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 298 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence 667789999999999988854 4454 599999998876 56677888999999999999988877 33 7888898
Q ss_pred CCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEec
Q 003279 750 GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 826 (834)
Q Consensus 750 ~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d---g~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~ 826 (834)
.++. ...+..+...+.+++|+|+|++|++++.+ ..|++||+.+++...+..|. .+.+++|+|+|++|++++.
T Consensus 299 ~~~~----~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~ 373 (415)
T 2hqs_A 299 NGGA----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSS 373 (415)
T ss_dssp TSSC----CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEE
T ss_pred CCCC----EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEc
Confidence 8763 23444566788999999999999988875 48999999999887776665 8999999999999998887
Q ss_pred CC---cEEEeC
Q 003279 827 DK---CVKIWK 834 (834)
Q Consensus 827 DG---~I~IWd 834 (834)
|+ .|++||
T Consensus 374 ~~~~~~l~~~d 384 (415)
T 2hqs_A 374 QGMGSVLNLVS 384 (415)
T ss_dssp ETTEEEEEEEE
T ss_pred CCCccEEEEEE
Confidence 77 688885
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-23 Score=224.55 Aligned_cols=268 Identities=10% Similarity=0.029 Sum_probs=217.5
Q ss_pred CCeEEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEE-eCCCeEEEEecC
Q 003279 553 SKVESCHFSPDGKLLATGGH-------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTE 624 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~-------Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~ 624 (834)
..+..++|+|+|++|++++. ++.|.+||..+++.+..+... ..+.+++|++++++++++ ..++.|.+||+.
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 45889999999999888874 568999999999988887643 457899999999966554 557999999999
Q ss_pred CCCceeeeeccCCC---------CeEEEEEccCCCcEEEEE-eCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCE
Q 003279 625 NPDYSLRTFTGHST---------TVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGR 693 (834)
Q Consensus 625 s~~~~i~~~~~h~~---------~V~sl~fspdg~~llasg-s~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ 693 (834)
+++. +..+..+.. .+.+++|+|+++.+++++ +.++.|.+||+.+++.+..+. ....+.+++|+|++++
T Consensus 120 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 120 TGEV-KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TCCE-EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCee-EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 8764 444443332 278899999998777666 358899999999999998887 4556889999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEeC----CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003279 694 ILAAAIENYISILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNK 767 (834)
Q Consensus 694 ll~~s~dg~I~iwDl~t~~~~~~l~~----h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 767 (834)
+++++.++.|.+||+.+++.+..+.. +...+.+++|+|++++++++. ++.|.+||+.++ +.+..+....
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~-- 273 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG---NILAKVAAPE-- 273 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC---CEEEEEECSS--
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEEcCC--
Confidence 99999999999999999988877764 555788999999999887776 589999999887 4555554433
Q ss_pred eEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecC
Q 003279 768 FHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 768 I~svafspdg~~L~sgs-~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~D 827 (834)
...++|+|+++++++++ .++.|.+||+.+++.+........+.+++|+|++++|+++..+
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 25689999999877777 5789999999999988655556688999999999977766654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-23 Score=224.05 Aligned_cols=274 Identities=7% Similarity=0.129 Sum_probs=206.5
Q ss_pred EEEcCCCCE-EEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC-CCeEEEEecCCCCceeeeecc
Q 003279 558 CHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG 635 (834)
Q Consensus 558 l~fSpdg~~-Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~s~~~~i~~~~~ 635 (834)
..|.+++.+ +++++.++.|.+||.++++.+..+..+...+ +++|+|++++|++++. ++.|++||+.++......+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 345665555 6677789999999999999988887777777 9999999997776666 889999999987653555666
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCC-C--cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc-CCe-EEEEECCC
Q 003279 636 HSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENY-ISILDVET 710 (834)
Q Consensus 636 h~~~V~sl~fspdg~~llasgs~D-g--~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~-I~iwDl~t 710 (834)
+...+.+++|+|+++.++ ++..+ + .|.+||+.+++.+..+.......+++|+|+++++++++. ++. |.+|++..
T Consensus 82 ~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 666666699999988666 44444 3 899999999999998888888999999999987776655 478 99999875
Q ss_pred CeEE----EEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003279 711 QVCR----LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 784 (834)
Q Consensus 711 ~~~~----~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs 784 (834)
...+ .........+.+++|+|+|++++++. ++.|++||+.++.....+..+.. ...+..++|+|+|++|++++
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~ 239 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLT 239 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEEC
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEE
Confidence 4222 12223456689999999999766655 78999999998744222555554 46678899999999887776
Q ss_pred c-CCeEEEEECCCCeEE---EeccC----CC---CeEEEEEeCCCCEEEEEe-cCCcEEEeC
Q 003279 785 C-YETLELWNMTENKTL---TLSAH----DK---LVSSLAASTVNGMVASAS-HDKCVKIWK 834 (834)
Q Consensus 785 ~-dg~I~Iwdl~~~~~~---~l~~h----~~---~V~~lafspdg~~LaSgs-~DG~I~IWd 834 (834)
. ++.|.+||+.+++.. .+..+ .. .+..++|+||+++|++++ .++.|.|||
T Consensus 240 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 240 ESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp SSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 4 668999999998873 11111 22 235689999999886655 566999996
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=227.50 Aligned_cols=254 Identities=10% Similarity=0.049 Sum_probs=178.7
Q ss_pred ccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEe-CC---CcEEEEeCCCC----eEEEEeccCCCCeEEEEECC
Q 003279 533 SAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HD---KKAVLWCTESF----TVKSTLEEHTQWITDVRFSP 604 (834)
Q Consensus 533 ~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs-~D---g~I~IWd~~t~----~~~~~l~~h~~~I~~l~fsp 604 (834)
+|+..++..+..+.++.+|..+|..+.|.||..-|++.. .. +.|+..-+... .....-.+|...|..+ +
T Consensus 67 lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~ 143 (356)
T 2w18_A 67 LWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---T 143 (356)
T ss_dssp EEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---T
T ss_pred EcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---C
Confidence 334445556677788888888888888888544322221 11 11111111111 1111113344444443 4
Q ss_pred CCCEEEEEe--CCCeEEEEecCCCCceeeeeccCCCCeEEEEEcc--CCCcEEEEEeCCCcEEEEECCCCceeeEeecC-
Q 003279 605 SLSRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ- 679 (834)
Q Consensus 605 dg~~Latgs--~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fsp--dg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~- 679 (834)
+++++.+++ .|+.|++|++......+..+..|...+..++|++ +...+|++++.|++|+|||+++++++.++..+
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~ 223 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD 223 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC
T ss_pred CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC
Confidence 555555543 5889999999654445677788999999999988 22458889999999999999999999999742
Q ss_pred ---CCeeEEEEecCCCEE------------EEEEcCCeEEEEECCCCeEEEEE-----eCCCCCEEEEEEcCCCCEEEEE
Q 003279 680 ---SGATQMRFQPRLGRI------------LAAAIENYISILDVETQVCRLKL-----QGHKNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 680 ---~~i~~l~~sp~g~~l------------l~~s~dg~I~iwDl~t~~~~~~l-----~~h~~~I~sl~~spdg~~Lasg 739 (834)
..+.+++|+|++..+ ++++.|++|++||..+++.+..+ .+|...+.+..++ +.+++++
T Consensus 224 ~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASg 301 (356)
T 2w18_A 224 SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAI 301 (356)
T ss_dssp ---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEE
T ss_pred cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEE
Confidence 247788999998876 44667899999999999887765 3676666555554 8889999
Q ss_pred e-CCeEEEEEcCCCCCceeEEEeecCCCceE-EEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 740 S-DELVRVWSIGSGSKGECIHELSCTGNKFH-SCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 740 s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~-svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
+ |++|+|||+.++ +++.++.+|...+. .++|+|+|++|++++.|++|+|||+
T Consensus 302 S~DgTIkIWDl~tG---k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 302 LTSGTIAIWDLLLG---QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ETTSCEEEEETTTC---SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred cCCCcEEEEECCCC---cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 8 999999999998 78889988876655 5899999999999999999999995
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.3e-23 Score=222.66 Aligned_cols=267 Identities=9% Similarity=0.146 Sum_probs=197.0
Q ss_pred EEEEEeCCCcEEEEeCC-CC--eEEEEeccCCCCeEEEEECCCCCEEEEEeCC-CeEEEEecC--CCCce-eeeeccCCC
Q 003279 566 LLATGGHDKKAVLWCTE-SF--TVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTE--NPDYS-LRTFTGHST 638 (834)
Q Consensus 566 ~Lasgs~Dg~I~IWd~~-t~--~~~~~l~~h~~~I~~l~fspdg~~Latgs~D-g~I~IWDl~--s~~~~-i~~~~~h~~ 638 (834)
++++++.|+.|++||+. ++ +.+..+ .|...+.+++|+|++++|++++.+ +.|.+|++. ++... +..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 34444779999999985 33 333333 477789999999999999998887 999999998 44432 23344333
Q ss_pred CeEEEEEccCCCcEEEEEeCCCcEEEEECC---CCceeeEeecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCC-CeE
Q 003279 639 TVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVET-QVC 713 (834)
Q Consensus 639 ~V~sl~fspdg~~llasgs~Dg~I~lwDl~---s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s-~dg~I~iwDl~t-~~~ 713 (834)
.+.+++|+|++..+++++..++.|.+||+. ..+.+..+.....+.+++|+|+++++++++ .++.|.+||+.+ ++.
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 789999999998777777778999999994 444555566667799999999999998888 789999999987 644
Q ss_pred EE----EEeC-CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC-CceeEEEee---cC---CCceEEEEEeCCCCE
Q 003279 714 RL----KLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS-KGECIHELS---CT---GNKFHSCVFHPTFPS 779 (834)
Q Consensus 714 ~~----~l~~-h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~-~~~~i~~~~---~~---~~~I~svafspdg~~ 779 (834)
.. .+.. ....+.+++|+|++++|++++ ++.|.+||+.... .......+. .. ...+..++|+|++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 244 (343)
T 1ri6_A 165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 244 (343)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence 32 2232 345788999999999776655 8899999996421 112222222 11 235678999999998
Q ss_pred EEEEE-cCCeEEEEECC--CC--eEEEeccCCCCeEEEEEeCCCCEEEEEe-cCCcEEEeC
Q 003279 780 LLVIG-CYETLELWNMT--EN--KTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 834 (834)
Q Consensus 780 L~sgs-~dg~I~Iwdl~--~~--~~~~l~~h~~~V~~lafspdg~~LaSgs-~DG~I~IWd 834 (834)
|+++. .++.|++||+. ++ +.+........+.+++|+|++++|++++ .|+.|.||+
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEE
Confidence 88666 67899999998 33 3332222233489999999999888887 689999993
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-23 Score=243.29 Aligned_cols=267 Identities=9% Similarity=0.062 Sum_probs=214.2
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEec--CCCCceeeeeccCC
Q 003279 560 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT--ENPDYSLRTFTGHS 637 (834)
Q Consensus 560 fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl--~s~~~~i~~~~~h~ 637 (834)
|+|++.++++++.|++|.+||..+++++.++..+.. +.+++|+||+++|++++.|++|++||+ .+.. .+..+. +.
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-~~~~i~-~g 221 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-KVAEIK-IG 221 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-EEEEEE-CC
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-EEEEEe-cC
Confidence 789999999999999999999999999999974433 899999999999999999999999999 6544 355555 45
Q ss_pred CCeEEEEEcc----CCCcEEEEEeCCCcEEEEECCCCceeeEeecC------------CCeeEEEEecCCCEEEEEE-cC
Q 003279 638 TTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------SGATQMRFQPRLGRILAAA-IE 700 (834)
Q Consensus 638 ~~V~sl~fsp----dg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~------------~~i~~l~~sp~g~~ll~~s-~d 700 (834)
..+..++|+| +++.+++++..++.|.+||..+++++..+... ..+..+.+++++..++++. .+
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 6689999999 98877766667999999999999998887642 2578999999887766555 46
Q ss_pred CeEEEEECCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeec----CCCceEEEE
Q 003279 701 NYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC----TGNKFHSCV 772 (834)
Q Consensus 701 g~I~iwDl~t~~~~~--~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~----~~~~I~sva 772 (834)
+.|.+||+.+.+.+. .+. +...+.+++|+|+|++|++++ +++|.+||+.++ +++..+.. |......+
T Consensus 302 g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg---~l~~~i~~g~~ph~g~g~~~- 376 (543)
T 1nir_A 302 GKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANF- 376 (543)
T ss_dssp TEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSBCCTTCEEE-
T ss_pred CeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCC---eEEEeeccCCCCCCCCCccc-
Confidence 999999998764332 443 566788999999999877665 789999999988 66666654 33333333
Q ss_pred EeCCCCEEEEEE--cCCeEEEEECCC-------CeEE-EeccCCCCeEEEEEeCCCCEEEEEe-------cCCcEEEeC
Q 003279 773 FHPTFPSLLVIG--CYETLELWNMTE-------NKTL-TLSAHDKLVSSLAASTVNGMVASAS-------HDKCVKIWK 834 (834)
Q Consensus 773 fspdg~~L~sgs--~dg~I~Iwdl~~-------~~~~-~l~~h~~~V~~lafspdg~~LaSgs-------~DG~I~IWd 834 (834)
++|++..+++++ .+++|.+||+.+ ++++ .+..|...+..++|+|++++|++++ .+++|.|||
T Consensus 377 ~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d 455 (543)
T 1nir_A 377 VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 455 (543)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence 578744444443 478999999988 7776 6778888899999999999999987 377999997
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-23 Score=252.10 Aligned_cols=275 Identities=14% Similarity=0.088 Sum_probs=213.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CC-----cEEEEeCCCCeEEEEeccCCC------------------------CeEEEE
Q 003279 552 TSKVESCHFSPDGKLLATGGH-DK-----KAVLWCTESFTVKSTLEEHTQ------------------------WITDVR 601 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~-Dg-----~I~IWd~~t~~~~~~l~~h~~------------------------~I~~l~ 601 (834)
...|.+++|||||++|++++. |+ .|++||+.+++....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456999999999999999998 88 899999999988777755433 388999
Q ss_pred ECCCCCEEEEEeCCCeEEEEecCCCC-ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCC
Q 003279 602 FSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 680 (834)
Q Consensus 602 fspdg~~Latgs~Dg~I~IWDl~s~~-~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~ 680 (834)
|+|||++|++++. +.|++||+.++. .....+..|...+.+++|+|||+.++ .++ ++.|++||+.+++.........
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la-~~~-~~~i~~~d~~~g~~~~~~~~~~ 192 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVS-FIR-GRNLWVIDLASGRQMQLTADGS 192 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEE-EEE-TTEEEEEETTTTEEEECCCCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEE-EEe-CCcEEEEecCCCCEEEeccCCc
Confidence 9999999999987 999999998762 02455677888899999999998655 444 5699999999887765544332
Q ss_pred C-----------------eeEEEEecCCCEEEEEEcCC---------------------------------eEEEEECCC
Q 003279 681 G-----------------ATQMRFQPRLGRILAAAIEN---------------------------------YISILDVET 710 (834)
Q Consensus 681 ~-----------------i~~l~~sp~g~~ll~~s~dg---------------------------------~I~iwDl~t 710 (834)
. +..+.|+|++++|++++.|+ .|++||+.+
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE 272 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence 2 47899999999999998765 889999998
Q ss_pred -CeEEEEEe--CCCCCEEEEEEcCCCCEEEEEe------CCeEEEEEcCCCCCceeEEEeecCCC----ceEEEEEeCCC
Q 003279 711 -QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS------DELVRVWSIGSGSKGECIHELSCTGN----KFHSCVFHPTF 777 (834)
Q Consensus 711 -~~~~~~l~--~h~~~I~sl~~spdg~~Lasgs------Dg~I~IwDl~s~~~~~~i~~~~~~~~----~I~svafspdg 777 (834)
++...... .|...+.+++| |||++|+++. +..|++||+.++. +...+..+.. .+..++|+|+|
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~spdg 348 (741)
T 2ecf_A 273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ---QRVLAHETSPTWVPLHNSLRFLDDG 348 (741)
T ss_dssp TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC---EEEEEEEECSSCCCCCSCCEECTTS
T ss_pred CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc---eEEEEEcCCCCcCCcCCceEECCCC
Confidence 76554433 37778999999 9999988764 3479999999873 3333333332 34678999999
Q ss_pred CEEEEEEcCCeEEEEEC--CCCeEEEeccCCCCeEEE-EEeCCCCEEEE-EecCC--cEEEeC
Q 003279 778 PSLLVIGCYETLELWNM--TENKTLTLSAHDKLVSSL-AASTVNGMVAS-ASHDK--CVKIWK 834 (834)
Q Consensus 778 ~~L~sgs~dg~I~Iwdl--~~~~~~~l~~h~~~V~~l-afspdg~~LaS-gs~DG--~I~IWd 834 (834)
+++++++.++.++||.+ .++ ...+..|...|..+ .|+|+++.|+. ++.|+ .++||+
T Consensus 349 ~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 349 SILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp CEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred eEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 98888888886666654 444 55777888888887 59999997754 45555 888884
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.4e-23 Score=248.04 Aligned_cols=272 Identities=11% Similarity=0.066 Sum_probs=204.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceee
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 631 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~ 631 (834)
.|.+++|||||++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|++++ ++.|++||+.++.. ..
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~-~~ 186 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ-MQ 186 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE-EE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE-EE
Confidence 4889999999999999986 999999999873 3446777888999999999999999987 46899999987543 33
Q ss_pred eeccCCCC----------------eEEEEEccCCCcEEEEEeCCC--------------------------------cEE
Q 003279 632 TFTGHSTT----------------VMSLDFHPSKEDLLCSCDNNS--------------------------------EIR 663 (834)
Q Consensus 632 ~~~~h~~~----------------V~sl~fspdg~~llasgs~Dg--------------------------------~I~ 663 (834)
....+... +.+++|+|||+.++++...++ .|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 33333322 478999999987775544321 789
Q ss_pred EEECCC-CceeeEee---cCCCeeEEEEecCCCEEEEEEc-----CCeEEEEECCCCeEEEEEeCCCC----CEEEEEEc
Q 003279 664 YWSINN-GSCAGVFK---CQSGATQMRFQPRLGRILAAAI-----ENYISILDVETQVCRLKLQGHKN----QVHSVCWN 730 (834)
Q Consensus 664 lwDl~s-~~~i~~~~---~~~~i~~l~~sp~g~~ll~~s~-----dg~I~iwDl~t~~~~~~l~~h~~----~I~sl~~s 730 (834)
+||+.+ ++...... +...+..++| |++++|++++. +..|++||+.++++...+..+.. .+.+++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999998 77655432 3345889999 99999998775 46799999999987777665543 45689999
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE-EEeCCCCEEEEEEcCC---eEEEEECCC-Ce-EEEec
Q 003279 731 TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYE---TLELWNMTE-NK-TLTLS 803 (834)
Q Consensus 731 pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv-afspdg~~L~sgs~dg---~I~Iwdl~~-~~-~~~l~ 803 (834)
|||+++++++ |+.++||.+.... . ...+..+...+..+ .|+|+++.|++.+.++ .++||++.. +. ...+.
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~--~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~ 422 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKG--K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS 422 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSS--C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred CCCeEEEEecCCCccEEEEEcCCC--C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence 9999888877 8878888776321 3 56666777778777 5999999887666544 788998753 43 33444
Q ss_pred cCCCCeEEEEEeCCCCEEEEEecC----CcEEEe
Q 003279 804 AHDKLVSSLAASTVNGMVASASHD----KCVKIW 833 (834)
Q Consensus 804 ~h~~~V~~lafspdg~~LaSgs~D----G~I~IW 833 (834)
. ...+.+++|+||+++|+....+ ..+.+|
T Consensus 423 ~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~ 455 (741)
T 2ecf_A 423 K-APGMHSASFARNASVYVDSWSNNSTPPQIELF 455 (741)
T ss_dssp C-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred c-CCCceEEEECCCCCEEEEEecCCCCCCeEEEE
Confidence 3 6778999999999988766443 345555
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.2e-23 Score=216.11 Aligned_cols=253 Identities=11% Similarity=0.090 Sum_probs=195.5
Q ss_pred EEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC-CCceeeeeccC-CCCeEEEEEc
Q 003279 569 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PDYSLRTFTGH-STTVMSLDFH 646 (834)
Q Consensus 569 sgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s-~~~~i~~~~~h-~~~V~sl~fs 646 (834)
.++.|+.|++||+.+++... +..|...|.+++|+|++++|++++ ++.|++||+.+ +.. ......+ ...|.+++|+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP-EKVDTGFATICNNDHGIS 93 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC-EECCCTTCCCBCSCCEEC
T ss_pred CCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc-eEeccccccccccceEEC
Confidence 34678999999999988764 456889999999999999999987 78999999998 654 4444444 4778999999
Q ss_pred cCCCcEEEEEe-CC--CcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEE-EEEcCCeEEEEEC--CCCeEEEEEeCC
Q 003279 647 PSKEDLLCSCD-NN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL-AAAIENYISILDV--ETQVCRLKLQGH 720 (834)
Q Consensus 647 pdg~~llasgs-~D--g~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll-~~s~dg~I~iwDl--~t~~~~~~l~~h 720 (834)
|++..+++++. .+ ..|.+|++.++. ...+.....+..++|+|+++.|+ ++..++.+.+|++ .++. ...+..+
T Consensus 94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~ 171 (297)
T 2ojh_A 94 PDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHG 171 (297)
T ss_dssp TTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCS
T ss_pred CCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccC
Confidence 99886654442 22 455555666555 34444555688999999999887 6677898888885 3443 4556668
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----------C
Q 003279 721 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----------E 787 (834)
Q Consensus 721 ~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d-----------g 787 (834)
...+.+++|+|++++|++++ ++.++||++.... ..+..+..+...+..++|+|++++|++++.+ .
T Consensus 172 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 249 (297)
T 2ojh_A 172 EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDV 249 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEE
T ss_pred CCccccceECCCCCEEEEEecCCCCccEEEECCCC--CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCce
Confidence 88999999999999887665 7889999886321 3455666677788999999999999988876 4
Q ss_pred eEEEEECCCCeEE---EeccCCCCeEEEEEeCCCCEEEEEecCC
Q 003279 788 TLELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDK 828 (834)
Q Consensus 788 ~I~Iwdl~~~~~~---~l~~h~~~V~~lafspdg~~LaSgs~DG 828 (834)
.|++||+.+++.. .+..|...|.+++|+|++++|++++.|.
T Consensus 250 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 250 RVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 6999999988654 3447888999999999999998887654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-22 Score=214.49 Aligned_cols=295 Identities=11% Similarity=0.080 Sum_probs=207.2
Q ss_pred eEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEeCC-
Q 003279 505 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTE- 582 (834)
Q Consensus 505 ~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~D-g~I~IWd~~- 582 (834)
++++++.|+.|.+|...... ....+..+ .|...+.+++|+|+|++|++++.+ +.|.+|++.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~----------------~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~ 69 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEG----------------ALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 69 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTS----------------CEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEeCCCCCeEEEEEECCCC----------------cEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecC
Confidence 34444778899999653211 11122222 466789999999999999998886 999999987
Q ss_pred -CCe--EEEEeccCCCCeEEEEECCCCCEEEEEeC-CCeEEEEecCCCC--ceeeeeccCCCCeEEEEEccCCCcEEEEE
Q 003279 583 -SFT--VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSC 656 (834)
Q Consensus 583 -t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~s~~--~~i~~~~~h~~~V~sl~fspdg~~llasg 656 (834)
+++ .+..+..+. .+.+++|+|++++|++++. ++.|.+||+..+. .....+. ....+.+++|+|+++.+++++
T Consensus 70 ~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~ 147 (343)
T 1ri6_A 70 DDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPA 147 (343)
T ss_dssp TTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEE
T ss_pred CCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEec
Confidence 544 344555444 7899999999998877765 8899999995221 1233333 345689999999998777666
Q ss_pred eCCCcEEEEECCC-CceeeE----ee--cCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCC--CeE--EEEEeC---C-
Q 003279 657 DNNSEIRYWSINN-GSCAGV----FK--CQSGATQMRFQPRLGRILAAA-IENYISILDVET--QVC--RLKLQG---H- 720 (834)
Q Consensus 657 s~Dg~I~lwDl~s-~~~i~~----~~--~~~~i~~l~~sp~g~~ll~~s-~dg~I~iwDl~t--~~~--~~~l~~---h- 720 (834)
..++.|++||+.+ ++.... +. ....+..++|+|+++++++++ .++.|.+||+.. ++. ...+.. .
T Consensus 148 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~ 227 (343)
T 1ri6_A 148 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF 227 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred CCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccc
Confidence 5899999999987 654322 22 245688899999999887776 689999999953 422 223321 1
Q ss_pred --CCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEE--
Q 003279 721 --KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELW-- 792 (834)
Q Consensus 721 --~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~-~~~~~i~~~~~~~~~I~svafspdg~~L~sgs-~dg~I~Iw-- 792 (834)
...+.+++|+|++++|+++. ++.|++||+... .....+..+..+.. +..++|+|++++|++++ .++.|.+|
T Consensus 228 ~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 228 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEE
Confidence 23677899999999887554 889999999832 12245555554444 88999999999999888 57899999
Q ss_pred ECCCCeEE--EeccCCCCeEEEEEeCCCC
Q 003279 793 NMTENKTL--TLSAHDKLVSSLAASTVNG 819 (834)
Q Consensus 793 dl~~~~~~--~l~~h~~~V~~lafspdg~ 819 (834)
|..+++.. ..........+++|.++.+
T Consensus 307 d~~~g~~~~~~~~~~g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 307 VGEQGLLHEKGRYAVGQGPMWVVVNAHEG 335 (343)
T ss_dssp ETTTTEEEEEEEEECSSSCCEEEEEEEC-
T ss_pred cCCCceeeEccccccCCCCeeEEEEcccC
Confidence 55566543 2222345677888887654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-22 Score=217.23 Aligned_cols=262 Identities=11% Similarity=0.067 Sum_probs=207.4
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEeccCCC--CeEEEEECCCCCEEE-EEeCCCeEEEEecCCCCceeeeec-cC----
Q 003279 565 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQ--WITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFT-GH---- 636 (834)
Q Consensus 565 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~--~I~~l~fspdg~~La-tgs~Dg~I~IWDl~s~~~~i~~~~-~h---- 636 (834)
++|++++.++.|.+||+.+++.+..+..... .+.+++|+|++++++ +++.++.|.+||+.+++. +..+. .+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe-EeeEEcCCcccc
Confidence 4789999999999999999999887753322 488999999998765 555678999999988664 33333 22
Q ss_pred CCCeEEEEEccCCCcEEEEEe-----------CCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003279 637 STTVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 705 (834)
Q Consensus 637 ~~~V~sl~fspdg~~llasgs-----------~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~i 705 (834)
...+.+++|+|+++.++++.. .++.|.+||+.+++.+..+.....+.+++|+|++++++++ ++.|++
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEE
Confidence 226788999999886665531 4799999999999988888877778899999999988888 689999
Q ss_pred EECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC-----------------------eEEEEEcCCCCCceeEEE
Q 003279 706 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE-----------------------LVRVWSIGSGSKGECIHE 760 (834)
Q Consensus 706 wDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg-----------------------~I~IwDl~s~~~~~~i~~ 760 (834)
||+.+++.+..+..+.. ...+.|+|++.+|+... ++ .|.+||+.++... ...
T Consensus 159 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~ 235 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA--MRE 235 (337)
T ss_dssp EETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE--EEE
T ss_pred EECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce--Eee
Confidence 99999988877765431 11337899988776554 22 4689999987432 334
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 761 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 761 ~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+..+...+..++|+|++++|+++ ++.|++||+.+++.+........+.+++|+|++++|++++.|+.|++||
T Consensus 236 ~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 45566678899999999998888 6899999999998875555556789999999999999999999999996
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.4e-22 Score=213.83 Aligned_cols=292 Identities=11% Similarity=0.082 Sum_probs=212.4
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEeC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCT 581 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~-Dg~I~IWd~ 581 (834)
..++++.+.++.|.+|..... . ....+..+...+ +++|+|||++|++++. ++.|++||+
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~----------------~---~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~ 69 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTL----------------E---ILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIET 69 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTC----------------C---EEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEEC
T ss_pred CEEEEEecCCCeEEEEeCccc----------------c---eeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEEC
Confidence 355677778888999855322 1 123333455556 9999999997777665 889999999
Q ss_pred CCCeE-EEEeccCCCCeEEEEECCCCCEEEEEeCCC---eEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEe
Q 003279 582 ESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 657 (834)
Q Consensus 582 ~t~~~-~~~l~~h~~~I~~l~fspdg~~Latgs~Dg---~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs 657 (834)
.+++. ...+..+..++.+++|+|++++|+++..++ .|.+||+.+++. +..+. +...+.+++|+|+++.+++++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~-~~~~~-~~~~~~~~~~spdg~~l~~~~~ 147 (331)
T 3u4y_A 70 QLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF-ISTIP-IPYDAVGIAISPNGNGLILIDR 147 (331)
T ss_dssp SSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE-EEEEE-CCTTEEEEEECTTSSCEEEEEE
T ss_pred CCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe-EEEEE-CCCCccceEECCCCCEEEEEec
Confidence 99887 777777777766699999999999555553 899999987653 44444 3455799999999988888877
Q ss_pred CCCc-EEEEECCCCcee-----eEeecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeE---EEEEeCCCCCEEEE
Q 003279 658 NNSE-IRYWSINNGSCA-----GVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVC---RLKLQGHKNQVHSV 727 (834)
Q Consensus 658 ~Dg~-I~lwDl~s~~~i-----~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~---~~~l~~h~~~I~sl 727 (834)
.++. |.+|++.....+ ..+........++|+|+++++++++. ++.|.+||+.+++. +..+.. ...+.++
T Consensus 148 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~ 226 (331)
T 3u4y_A 148 SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTI 226 (331)
T ss_dssp TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCE
T ss_pred CCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceE
Confidence 7788 999999764332 22334566899999999998777664 78999999998877 777764 4667899
Q ss_pred EEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecC----CC---ceEEEEEeCCCCEEEEEEcC-CeEEEEECCCC
Q 003279 728 CWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCT----GN---KFHSCVFHPTFPSLLVIGCY-ETLELWNMTEN 797 (834)
Q Consensus 728 ~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~----~~---~I~svafspdg~~L~sgs~d-g~I~Iwdl~~~ 797 (834)
+|+|+|++|+++. ++.|.+||+.++.. ..+..+... .. ....++|+|++++|++++.+ +.|.+||+.+.
T Consensus 227 ~~spdg~~l~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 227 VVSRDGSTVYVLTESTVDVFNFNQLSGTL-SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp EECTTSSEEEEECSSEEEEEEEETTTTEE-EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred EECCCCCEEEEEEcCCCEEEEEECCCCce-eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 9999999877765 67899999988732 113333322 11 22458999999998877765 59999999887
Q ss_pred eEEEeccCCCCeEEEEEeCCC
Q 003279 798 KTLTLSAHDKLVSSLAASTVN 818 (834)
Q Consensus 798 ~~~~l~~h~~~V~~lafspdg 818 (834)
....+...+..-....++|++
T Consensus 306 ~~~~~~~~~~~g~~~~~~~~~ 326 (331)
T 3u4y_A 306 VVGYVAGIEANGGIAICHPDK 326 (331)
T ss_dssp EEEECTTCCCBSCEEECCCC-
T ss_pred cccceecccccCCeEEECCcc
Confidence 765554444433334445543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.2e-23 Score=214.79 Aligned_cols=238 Identities=14% Similarity=0.112 Sum_probs=187.2
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEEeccC-CCCeEEEEECCCCCEEEEEe--CCCeEEEEe
Q 003279 547 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEH-TQWITDVRFSPSLSRLATSS--ADRTVRVWD 622 (834)
Q Consensus 547 ~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t-~~~~~~l~~h-~~~I~~l~fspdg~~Latgs--~Dg~I~IWD 622 (834)
.+..|...|.+++|+|||++|++++ ++.|++||+.+ ++....+..| ...|.+++|+|++++|++++ .++.+.||.
T Consensus 36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~ 114 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYL 114 (297)
T ss_dssp EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEE
T ss_pred eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEE
Confidence 4456788999999999999999987 78999999999 8877766666 47789999999999999999 335555555
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC--CCCceeeEeecCCCeeEEEEecCCCEEEEEEc-
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGVFKCQSGATQMRFQPRLGRILAAAI- 699 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl--~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~- 699 (834)
++........+..+ ..+.+++|+|++..++++++.++.+.+|++ .++.......+...+.+++|+|++..+++++.
T Consensus 115 ~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 193 (297)
T 2ojh_A 115 LPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR 193 (297)
T ss_dssp EETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT
T ss_pred EECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC
Confidence 54322223444433 348999999999988878888998899885 45555444455677999999999998888774
Q ss_pred CCeEEEEECC-CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C-----------CeEEEEEcCCCCCceeEEEeecCCC
Q 003279 700 ENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-----------ELVRVWSIGSGSKGECIHELSCTGN 766 (834)
Q Consensus 700 dg~I~iwDl~-t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-D-----------g~I~IwDl~s~~~~~~i~~~~~~~~ 766 (834)
++.+.+|++. .+..+..+..|...+.+++|+|++++|++++ + ..|++||+.++.. ..+..+..+..
T Consensus 194 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~ 272 (297)
T 2ojh_A 194 TGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV-ETLFDLFGGQG 272 (297)
T ss_dssp TSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC-EEEEEEEESTT
T ss_pred CCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc-eeeeccCCCCc
Confidence 8889999876 4556667777888899999999999998877 4 4699999988643 34555557788
Q ss_pred ceEEEEEeCCCCEEEEEEcCC
Q 003279 767 KFHSCVFHPTFPSLLVIGCYE 787 (834)
Q Consensus 767 ~I~svafspdg~~L~sgs~dg 787 (834)
.+..++|+|++++|++++.+.
T Consensus 273 ~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 273 TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TSCSCCBCTTSSEEEEEEECC
T ss_pred ccccceECCCCCEEEEEEecc
Confidence 899999999999999887764
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-22 Score=236.45 Aligned_cols=267 Identities=9% Similarity=0.051 Sum_probs=206.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEEEeccCC-CCeEEEEECCCCCEEEEEeC---CCeEEEEecCC-
Q 003279 552 TSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSA---DRTVRVWDTEN- 625 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~-Dg~I~IWd~~t~~~~~~l~~h~-~~I~~l~fspdg~~Latgs~---Dg~I~IWDl~s- 625 (834)
..+|++++|+|||++||+++. ||++.||++++++... +..|. ..|.+++|+|| +++++++. +....||.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 457999999999999999887 9999999997766654 44454 68999999999 77777775 45556665543
Q ss_pred -CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcC----
Q 003279 626 -PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---- 700 (834)
Q Consensus 626 -~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d---- 700 (834)
..... .+..+ ..+...+|+|+++.++++++.++.+.+||+.+++......... .+++|+|+|+.|++++.+
T Consensus 99 ~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 99 RPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp STTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTE
T ss_pred CCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCC
Confidence 22222 33222 2345678999988766666666667799999988776666544 889999999999988876
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CC--eEEEEEcCCCCCceeEEEeecCCCceEEEE-----
Q 003279 701 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCV----- 772 (834)
Q Consensus 701 g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sva----- 772 (834)
+.|++||+.+++.. .+..|...+.+++|+|||++|+++. ++ .|++||+.++ ... .+..+...+..++
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~---~~~-~~~~~~~~~~~~~~~~~~ 249 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG---SVE-DLELPSKDFSSYRPTAIT 249 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC---CEE-ECCCSCSHHHHHCCSEEE
T ss_pred eEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC---cEE-EccCCCcChhhhhhcccc
Confidence 78999999988755 6677888999999999999999766 77 8999999887 333 5556666666666
Q ss_pred ---EeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCc---EEEeC
Q 003279 773 ---FHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC---VKIWK 834 (834)
Q Consensus 773 ---fspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~---I~IWd 834 (834)
|+|||..+++++.++.+++|++ ++... .+.+.|.+++|+ +++++++++.+.. |++||
T Consensus 250 ~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 250 WLGYLPDGRLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp EEEECTTSCEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred ceeEcCCCcEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 9999988888899999999999 66554 345779999999 9999998887743 66654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.6e-23 Score=247.03 Aligned_cols=275 Identities=13% Similarity=0.152 Sum_probs=207.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCC---CeEEEEECCCCCEEEEEeCC---------CeEEEE
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSAD---------RTVRVW 621 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~---~I~~l~fspdg~~Latgs~D---------g~I~IW 621 (834)
.+.+++|+|||+++++ +.||+|++||+.+++....+..|.. .|.+++|+|||++|++++.+ +.|++|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678999999998776 7899999999999998888877765 49999999999999999874 788999
Q ss_pred ecCCCCce-eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCe-----------------
Q 003279 622 DTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGA----------------- 682 (834)
Q Consensus 622 Dl~s~~~~-i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i----------------- 682 (834)
|+.++... +.....|...+.+++|+|||+.++++. ++.|++||+.+++....... ...+
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEE--CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence 99986641 222234555689999999998666444 47999999998887665543 2222
Q ss_pred -eEEEEecCCCEEEEEEcCC----------------------------------eEEEEECCCCeEEEEEeCC------C
Q 003279 683 -TQMRFQPRLGRILAAAIEN----------------------------------YISILDVETQVCRLKLQGH------K 721 (834)
Q Consensus 683 -~~l~~sp~g~~ll~~s~dg----------------------------------~I~iwDl~t~~~~~~l~~h------~ 721 (834)
.++.|+|+++.|++++.++ .|++||+.+++....+..+ .
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE 254 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence 7899999999999988653 7999999988765566544 5
Q ss_pred CCEEEEEEcCCCCEEEEEe-C----CeEEEEEcCCCCCceeEEEeec-CCCce----EEEEEeCCCCEEEEE--EcCC--
Q 003279 722 NQVHSVCWNTSGEYLASVS-D----ELVRVWSIGSGSKGECIHELSC-TGNKF----HSCVFHPTFPSLLVI--GCYE-- 787 (834)
Q Consensus 722 ~~I~sl~~spdg~~Lasgs-D----g~I~IwDl~s~~~~~~i~~~~~-~~~~I----~svafspdg~~L~sg--s~dg-- 787 (834)
..+.+++|+|||++|++.. . ..|++||+.++. +...+.. +...+ ..++|+|||+.|++. ..++
T Consensus 255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 331 (723)
T 1xfd_A 255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV---CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR 331 (723)
T ss_dssp EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC---EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc---ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCC
Confidence 6789999999999887764 2 379999998873 3333322 22333 378999999987764 3455
Q ss_pred ----eEEEEE-CCCCe---EEEeccCCCCeEE-EEEeCCCCEEEEEecC---CcEEEeC
Q 003279 788 ----TLELWN-MTENK---TLTLSAHDKLVSS-LAASTVNGMVASASHD---KCVKIWK 834 (834)
Q Consensus 788 ----~I~Iwd-l~~~~---~~~l~~h~~~V~~-lafspdg~~LaSgs~D---G~I~IWd 834 (834)
.|++|| ..++. ...+..+...+.. ++|+|||+.|+..+.+ +.++||+
T Consensus 332 ~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 332 GKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp SCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred cceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence 577888 45555 4455444455554 6999999998766655 7888884
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-21 Score=234.58 Aligned_cols=274 Identities=12% Similarity=0.089 Sum_probs=207.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC-----C
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-----P 626 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s-----~ 626 (834)
...|.+++|+|| +.++.+. ++.|++||+.+++.... ..+...+.+++|+|||++|+++ .|+.|++||+.+ +
T Consensus 81 ~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp -CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred ccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence 357999999999 6666664 59999999999876544 4567789999999999999995 689999999987 5
Q ss_pred CceeeeeccCCCC--------------eEEEEEccCCCcEEEEEe--------------------------------CCC
Q 003279 627 DYSLRTFTGHSTT--------------VMSLDFHPSKEDLLCSCD--------------------------------NNS 660 (834)
Q Consensus 627 ~~~i~~~~~h~~~--------------V~sl~fspdg~~llasgs--------------------------------~Dg 660 (834)
.. ......+... +.+++|+|||+.+++++. .+.
T Consensus 157 ~~-~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~ 235 (706)
T 2z3z_A 157 RA-IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV 235 (706)
T ss_dssp CC-EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred Cc-EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence 53 3333333332 489999999987665541 346
Q ss_pred cEEEEECCCCceeeEee---cCCCeeEEEEecCCCEEEEEEcCC-----eEEEEECCCC-eEEEEEeC-CCC---CEEEE
Q 003279 661 EIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIEN-----YISILDVETQ-VCRLKLQG-HKN---QVHSV 727 (834)
Q Consensus 661 ~I~lwDl~s~~~i~~~~---~~~~i~~l~~sp~g~~ll~~s~dg-----~I~iwDl~t~-~~~~~l~~-h~~---~I~sl 727 (834)
.|++||+.+++...... +...+.+++|+|+++.|++++.++ .|++||+.++ ........ +.. .+.++
T Consensus 236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 315 (706)
T 2z3z_A 236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPL 315 (706)
T ss_dssp EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCC
T ss_pred EEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCc
Confidence 79999999888665542 234588999999999999988775 8999999998 44333322 222 24678
Q ss_pred EEcC--CCCEEEEEe-CCeEEEEEcC-CCCCceeEEEeecCCCceEE-EEEeCCCCEEEEEEcCC-----eEEEEECCCC
Q 003279 728 CWNT--SGEYLASVS-DELVRVWSIG-SGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCYE-----TLELWNMTEN 797 (834)
Q Consensus 728 ~~sp--dg~~Lasgs-Dg~I~IwDl~-s~~~~~~i~~~~~~~~~I~s-vafspdg~~L~sgs~dg-----~I~Iwdl~~~ 797 (834)
+|+| ||++|+++. |+.++||++. ++ ..+..+..+...+.. ++|+|+++.|++++.++ .|+.||+.++
T Consensus 316 ~~sp~~dg~~l~~~~~~g~~~l~~~~~~~---~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 316 TFLPGSNNQFIWQSRRDGWNHLYLYDTTG---RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG 392 (706)
T ss_dssp EECTTCSSEEEEEECTTSSCEEEEEETTS---CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred eeecCCCCEEEEEEccCCccEEEEEECCC---CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence 9999 999998887 8888888876 33 456666666777776 79999999888776653 6788888887
Q ss_pred eEEEeccCCCCeEEEEEeCCCCEEEEEecC----CcEEEeC
Q 003279 798 KTLTLSAHDKLVSSLAASTVNGMVASASHD----KCVKIWK 834 (834)
Q Consensus 798 ~~~~l~~h~~~V~~lafspdg~~LaSgs~D----G~I~IWd 834 (834)
+...+ .|...+.+++|+|||++|+.++.+ +.|++||
T Consensus 393 ~~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 393 KTKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp CCEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred Cceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence 75444 477789999999999988876544 4599985
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.7e-22 Score=247.70 Aligned_cols=278 Identities=8% Similarity=-0.002 Sum_probs=227.0
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEec
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 623 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t-~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 623 (834)
...+.+|...|.++.|+++ .++++++.|+.+.||.+.. +.....+..|. .+.+++|+|||++|+++ .++.|++||+
T Consensus 196 ~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~ 272 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNP 272 (1045)
T ss_dssp EEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECT
T ss_pred eEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecC
Confidence 4455899999999999998 6777888889999997653 44555666665 46788999999999888 4899999999
Q ss_pred CCCCceeeeecc-----------CCCCeEEEEEc-cCCCcEEEEEeCCCcEEEEECCCCceeeEeecCC-CeeEEEEecC
Q 003279 624 ENPDYSLRTFTG-----------HSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPR 690 (834)
Q Consensus 624 ~s~~~~i~~~~~-----------h~~~V~sl~fs-pdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~-~i~~l~~sp~ 690 (834)
.... +..+.. |...|.+++|+ |+|..+++++ ++.|++|++..+.......+.. .+..++|+ +
T Consensus 273 ~~~~--l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-d 347 (1045)
T 1k32_A 273 DTEK--IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-T 347 (1045)
T ss_dssp TTCC--EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEEECSCCSCEEEEEECSS-S
T ss_pred CceE--eeeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceEEccCCCcceEEeeeEc-C
Confidence 5432 334443 34479999999 9988666544 8899999999887665444445 68899999 9
Q ss_pred CCEEEEEEcCCeEE-EEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCce
Q 003279 691 LGRILAAAIENYIS-ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF 768 (834)
Q Consensus 691 g~~ll~~s~dg~I~-iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I 768 (834)
++.|++++.++.|. +||+.+++... +.+|...+.+++|+|||++|++++ ++.|++||+.++ ........+...+
T Consensus 348 g~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg---~~~~~~~~~~~~v 423 (1045)
T 1k32_A 348 KVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG---KPTVIERSREAMI 423 (1045)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECSSSCC
T ss_pred CCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC---ceEEeccCCCCCc
Confidence 99999999888899 99998876544 347888999999999999999988 889999999987 4555555788888
Q ss_pred EEEEEeCCCCEEEEEEcCC----------eEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 769 HSCVFHPTFPSLLVIGCYE----------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 769 ~svafspdg~~L~sgs~dg----------~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.+++|+|||++|++++.++ .|++||+.+++...+..|...+.+++|+|||++|++++.++...+|+
T Consensus 424 ~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 424 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred cceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence 9999999999999887654 89999999999778888999999999999999999999888777774
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-21 Score=244.29 Aligned_cols=278 Identities=9% Similarity=0.077 Sum_probs=217.1
Q ss_pred EEEecCCCCCe-------EEEEEcCCCCEEEEEeCC------CcEEEEeCCCCeEE------------------------
Q 003279 545 FQLIPASTSKV-------ESCHFSPDGKLLATGGHD------KKAVLWCTESFTVK------------------------ 587 (834)
Q Consensus 545 ~~~l~gH~~~V-------~sl~fSpdg~~Lasgs~D------g~I~IWd~~t~~~~------------------------ 587 (834)
...+..|...+ .+++|+|||+++++++.+ ..|++|++.+++..
T Consensus 92 ~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~ 171 (1045)
T 1k32_A 92 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTF 171 (1045)
T ss_dssp EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCS
T ss_pred eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCC
Confidence 45667788777 999999999977777754 35778877655432
Q ss_pred -------------------------EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEE
Q 003279 588 -------------------------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 642 (834)
Q Consensus 588 -------------------------~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~s 642 (834)
..+.+|...+.++.|+++ .++++++.|+.+.||.+.........+..|. .+..
T Consensus 172 ~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~ 249 (1045)
T 1k32_A 172 ELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYP 249 (1045)
T ss_dssp CCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCE
T ss_pred CccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-Ccce
Confidence 123457778889999888 6677788889999998765333345555555 4677
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC------------CCeeEEEEe-cCCCEEEEEEcCCeEEEEECC
Q 003279 643 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------SGATQMRFQ-PRLGRILAAAIENYISILDVE 709 (834)
Q Consensus 643 l~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~------------~~i~~l~~s-p~g~~ll~~s~dg~I~iwDl~ 709 (834)
++|+|+|..++++ .++.|++||+...... .+... ..+.+++|+ |++..+++++ ++.|.+|++.
T Consensus 250 ~~~SpDG~~la~~--~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~ 325 (1045)
T 1k32_A 250 RHLNTDGRRILFS--KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS 325 (1045)
T ss_dssp EEEEESSSCEEEE--ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT
T ss_pred eeEcCCCCEEEEE--eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCC
Confidence 8999999876654 4899999999544433 33321 258899999 9999888887 8899999999
Q ss_pred CCeEEEEEeCCCC-CEEEEEEcCCCCEEEEEe-CCeEE-EEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003279 710 TQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS-DELVR-VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 786 (834)
Q Consensus 710 t~~~~~~l~~h~~-~I~sl~~spdg~~Lasgs-Dg~I~-IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d 786 (834)
.+.... +..|.. .+.+++|+ ||+.|+.++ +..+. +||+.++. . ..+..+...+..++|+|+|++|++++.+
T Consensus 326 ~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~---~-~~l~~~~~~~~~~~~SpDG~~la~~~~~ 399 (1045)
T 1k32_A 326 GTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK---A-EKFEENLGNVFAMGVDRNGKFAVVANDR 399 (1045)
T ss_dssp SSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC---E-EECCCCCCSEEEEEECTTSSEEEEEETT
T ss_pred CCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC---c-eEecCCccceeeeEECCCCCEEEEECCC
Confidence 876543 566777 89999999 999999888 66788 88988762 2 2334667889999999999999999999
Q ss_pred CeEEEEECCCCeEEEec-cCCCCeEEEEEeCCCCEEEEEecCC----------cEEEeC
Q 003279 787 ETLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHDK----------CVKIWK 834 (834)
Q Consensus 787 g~I~Iwdl~~~~~~~l~-~h~~~V~~lafspdg~~LaSgs~DG----------~I~IWd 834 (834)
+.|++||+.+++...+. .|...|.+++|+|||++|++++.++ .|++||
T Consensus 400 ~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 400 FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred CeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEE
Confidence 99999999999887555 8999999999999999999887654 899996
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-21 Score=234.92 Aligned_cols=298 Identities=11% Similarity=0.075 Sum_probs=207.5
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCC---CeEEEEEcCCCCEEEEEeCC-------
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGHD------- 573 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~---~V~sl~fSpdg~~Lasgs~D------- 573 (834)
.++++ +.|+.+++|..... . ....+.+|.. .|.+++|||||++||+++.+
T Consensus 29 ~~~~~-~~dg~i~~~d~~~g----------------~---~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~ 88 (723)
T 1xfd_A 29 EFIYR-EQKGTVRLWNVETN----------------T---STVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHS 88 (723)
T ss_dssp CBCCC-CSSSCEEEBCGGGC----------------C---CEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSC
T ss_pred cEEEE-eCCCCEEEEECCCC----------------c---EEEEeccccccccccceEEECCCCCEEEEEecCccceeec
Confidence 35544 56778888844322 1 1234455554 49999999999999999874
Q ss_pred --CcEEEEeCCCCeEEEEec---cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCC---------
Q 003279 574 --KKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT--------- 639 (834)
Q Consensus 574 --g~I~IWd~~t~~~~~~l~---~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~--------- 639 (834)
+.|++||+.+++. ..+. .|...+.+++|+|||++|++++. +.|++||+.++.. ......+...
T Consensus 89 ~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~~~~g~~~~ 165 (723)
T 1xfd_A 89 YTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGVIYNGLSDW 165 (723)
T ss_dssp CCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-EEEECCCBTTTEEEEECCH
T ss_pred ceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCCceECcccce
Confidence 7888999998876 3333 45556899999999999999986 7999999987654 3333333332
Q ss_pred ---------eEEEEEccCCCcEEEEEeCC---------------------------------CcEEEEECCCCceeeEee
Q 003279 640 ---------VMSLDFHPSKEDLLCSCDNN---------------------------------SEIRYWSINNGSCAGVFK 677 (834)
Q Consensus 640 ---------V~sl~fspdg~~llasgs~D---------------------------------g~I~lwDl~s~~~i~~~~ 677 (834)
+.+++|+|||+.++++...+ ..|++||+.++++...+.
T Consensus 166 v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~ 245 (723)
T 1xfd_A 166 LYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM 245 (723)
T ss_dssp HHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred eEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee
Confidence 37899999998766554322 279999999887655554
Q ss_pred c-------CCCeeEEEEecCCCEEEEEEcC----CeEEEEECCCCeEEEEEeC-CCCCE----EEEEEcCCCCEEEEE-e
Q 003279 678 C-------QSGATQMRFQPRLGRILAAAIE----NYISILDVETQVCRLKLQG-HKNQV----HSVCWNTSGEYLASV-S 740 (834)
Q Consensus 678 ~-------~~~i~~l~~sp~g~~ll~~s~d----g~I~iwDl~t~~~~~~l~~-h~~~I----~sl~~spdg~~Lasg-s 740 (834)
. ...+..++|+|+++.+++.... ..|++||+.++++...+.. +...+ .+++|+|||+.|+.. +
T Consensus 246 ~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 325 (723)
T 1xfd_A 246 PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRA 325 (723)
T ss_dssp CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEE
T ss_pred CCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEe
Confidence 3 2457889999999988776543 5799999999987666543 33444 378999999977654 3
Q ss_pred --CC------eEEEEEc-CCCCCceeEEEeecCCCceEE-EEEeCCCCEEEEEEcC---CeEEEEECCCC---eEEEecc
Q 003279 741 --DE------LVRVWSI-GSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCY---ETLELWNMTEN---KTLTLSA 804 (834)
Q Consensus 741 --Dg------~I~IwDl-~s~~~~~~i~~~~~~~~~I~s-vafspdg~~L~sgs~d---g~I~Iwdl~~~---~~~~l~~ 804 (834)
++ .|++||+ ..+.. .+...+......+.. ++|+|+++.|++.+.+ +.++||++... +...+..
T Consensus 326 ~~~~~~~~~~~l~~~d~~~~~~~-~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 404 (723)
T 1xfd_A 326 IPQGGRGKFYHITVSSSQPNSSN-DNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSC 404 (723)
T ss_dssp ECCSSSSCEEEEEEECSSCCSSS-CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSST
T ss_pred cccCCCcceeEEEEEeccCCCCc-cceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecc
Confidence 66 4666773 33320 012333333344444 6999999999877766 67889987542 2333433
Q ss_pred ---CCCCeEEEEEeCCCCEEEEEe
Q 003279 805 ---HDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 805 ---h~~~V~~lafspdg~~LaSgs 825 (834)
|...+..++|+|||++|+...
T Consensus 405 ~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 405 DLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp TSSSSCCCCEEEECTTSSEEEEEC
T ss_pred cccCCCCeEEEEECCCCCEEEEEc
Confidence 677899999999999887653
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.5e-21 Score=205.66 Aligned_cols=268 Identities=12% Similarity=0.083 Sum_probs=203.3
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEec-CCCC-CeEEEEEcCCCCEEE-EEeCCCcEEEEe
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTS-KVESCHFSPDGKLLA-TGGHDKKAVLWC 580 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~-gH~~-~V~sl~fSpdg~~La-sgs~Dg~I~IWd 580 (834)
.++++++.++.|.+|+.... . .+..+. ++.. .+.+++|+|||++|+ ++..++.|.+||
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~----------------~---~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 62 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM----------------A---VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT----------------E---EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cEEEEcCCCCeEEEEECCCC----------------c---EEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEE
Confidence 46788888999999965322 1 122232 2222 478899999998765 455678999999
Q ss_pred CCCCeEEEEecc-C----CCCeEEEEECCCCCEEEEEe------------CCCeEEEEecCCCCceeeeeccCCCCeEEE
Q 003279 581 TESFTVKSTLEE-H----TQWITDVRFSPSLSRLATSS------------ADRTVRVWDTENPDYSLRTFTGHSTTVMSL 643 (834)
Q Consensus 581 ~~t~~~~~~l~~-h----~~~I~~l~fspdg~~Latgs------------~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl 643 (834)
+.+++.+..+.. + ...+.+++|+|++++|++++ .++.|.+||+.+++. +..+.. ...+.++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFEA-PRQITML 140 (337)
T ss_dssp TTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEEC-CSSCCCE
T ss_pred CCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE-EEEEeC-CCCccee
Confidence 999988877653 2 22678999999999999886 579999999987553 444443 4568889
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCC----------------------
Q 003279 644 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN---------------------- 701 (834)
Q Consensus 644 ~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg---------------------- 701 (834)
+|+|+++.++++ ++.|++||+.+++.+..+........+.|+|++..+++.+..+
T Consensus 141 ~~s~dg~~l~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
T 1pby_B 141 AWARDGSKLYGL---GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY 217 (337)
T ss_dssp EECTTSSCEEEE---SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred EECCCCCEEEEe---CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccccccccccccc
Confidence 999999876655 6889999999999887776544223447888888766554332
Q ss_pred --eEEEEECCCCeEE-EEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003279 702 --YISILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 778 (834)
Q Consensus 702 --~I~iwDl~t~~~~-~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~ 778 (834)
.|.+||+.+++.. ..+..+...+.+++|+|++++|+++ ++.|++||+.++ +.+..+.. ...+.+++|+|+++
T Consensus 218 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~ 292 (337)
T 1pby_B 218 RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKN---ASIKRVPL-PHSYYSVNVSTDGS 292 (337)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTT---EEEEEEEC-SSCCCEEEECTTSC
T ss_pred ccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCC---cCcceecC-CCceeeEEECCCCC
Confidence 4789999998664 3344566788999999999999888 799999999887 55555543 35678999999999
Q ss_pred EEEEEEcCCeEEEEECCCCeEE
Q 003279 779 SLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 779 ~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
+|++++.++.|++||+.+++.+
T Consensus 293 ~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 293 TVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp EEEEESBSSEEEEEETTTCCEE
T ss_pred EEEEEcCCCcEEEEECcCCcEE
Confidence 9999988999999999998877
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-20 Score=203.73 Aligned_cols=267 Identities=11% Similarity=0.096 Sum_probs=185.7
Q ss_pred EEEEEeC----CCcEEEEeC--CCCeEEE-EeccCCCCeEEEEECCCCCEEEEEeC---CCeEEEEecCCCCc-eeeeec
Q 003279 566 LLATGGH----DKKAVLWCT--ESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDY-SLRTFT 634 (834)
Q Consensus 566 ~Lasgs~----Dg~I~IWd~--~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~---Dg~I~IWDl~s~~~-~i~~~~ 634 (834)
.|++|+. ++.|.+|++ ++++... ....+...+..++|+||++ |++++. ++.|++||+.++.. .+..+.
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~ 82 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV 82 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee
Confidence 3555532 456777654 4566543 3334567788999999999 555544 68999999976543 233445
Q ss_pred cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-Cc--eeeEeecC----------CCeeEEEEecCCCEEEEEEcCC
Q 003279 635 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GS--CAGVFKCQ----------SGATQMRFQPRLGRILAAAIEN 701 (834)
Q Consensus 635 ~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s-~~--~i~~~~~~----------~~i~~l~~sp~g~~ll~~s~dg 701 (834)
.+...+..++|+|+++.+++++..++.|.+|++.. +. .+..+... ..+.+++|+|+++.+++...++
T Consensus 83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~ 162 (347)
T 3hfq_A 83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD 162 (347)
T ss_dssp EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence 57788999999999987776665789999999963 33 23333221 2377899999999444444578
Q ss_pred eEEEEECC-CCeEE--EEEeC-CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCceeEEEeecCC------Cce
Q 003279 702 YISILDVE-TQVCR--LKLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCTG------NKF 768 (834)
Q Consensus 702 ~I~iwDl~-t~~~~--~~l~~-h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~-~~~~~i~~~~~~~------~~I 768 (834)
.|.+||+. +++.. ..+.. ....+..++|+|||++|+++. ++.|.+|++... .....+..+.... ..+
T Consensus 163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 242 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGA 242 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEE
T ss_pred EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcc
Confidence 99999998 55432 22232 234678999999999777765 789999998752 1112233333322 458
Q ss_pred EEEEEeCCCCEEEEEE-cCCeEEEEECCC-C--eEE-EeccCCCCeEEEEEeCCCCEEEEEecC-CcEEEe
Q 003279 769 HSCVFHPTFPSLLVIG-CYETLELWNMTE-N--KTL-TLSAHDKLVSSLAASTVNGMVASASHD-KCVKIW 833 (834)
Q Consensus 769 ~svafspdg~~L~sgs-~dg~I~Iwdl~~-~--~~~-~l~~h~~~V~~lafspdg~~LaSgs~D-G~I~IW 833 (834)
..++|+|+|++|++++ .++.|.+|++.. + +.+ .+..+...+.+++|+|||++|++++.+ +.|.+|
T Consensus 243 ~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 243 AAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp EEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred eeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 8899999999886554 578999999973 2 233 444566778999999999988888754 899999
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.8e-21 Score=205.56 Aligned_cols=270 Identities=9% Similarity=0.039 Sum_probs=195.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCC-CCeEEEEECCCCCEEE-EEeCCCeEEEEecCCCCceeeeec
Q 003279 557 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFT 634 (834)
Q Consensus 557 sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~-~~I~~l~fspdg~~La-tgs~Dg~I~IWDl~s~~~~i~~~~ 634 (834)
.+++++++.++++++.++.|++||+.+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++. ...+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~-~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE-EEEEE
Confidence 45678889999999999999999999999988876543 2578999999998665 455689999999987654 33333
Q ss_pred -cC-----CCCeEEEEEccCCCcEEEEEeC-----------CCcEEEEECCCCc---eeeEeecCCCeeEEEEecCCCEE
Q 003279 635 -GH-----STTVMSLDFHPSKEDLLCSCDN-----------NSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGRI 694 (834)
Q Consensus 635 -~h-----~~~V~sl~fspdg~~llasgs~-----------Dg~I~lwDl~s~~---~i~~~~~~~~i~~l~~sp~g~~l 694 (834)
.+ ...+.+++|+|+++.++++... ++.|.+||+.+++ .+..+.....+.+++|+|+++ +
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-L 161 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-E
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-E
Confidence 22 2347899999998866655533 4899999998844 344555566788999999999 6
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEeCCCC------------------------CEEEEEEcCCCCEEEEEe--CCeEEEEE
Q 003279 695 LAAAIENYISILDVETQVCRLKLQGHKN------------------------QVHSVCWNTSGEYLASVS--DELVRVWS 748 (834)
Q Consensus 695 l~~s~dg~I~iwDl~t~~~~~~l~~h~~------------------------~I~sl~~spdg~~Lasgs--Dg~I~IwD 748 (834)
+++ ++.|.+||+.+++.+..+..+.. ...++++++++....... ...+..+|
T Consensus 162 ~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEc--cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 664 34599999999988877754320 344567766543221111 11223355
Q ss_pred cCCCCCceeEEEeecCCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecC
Q 003279 749 IGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 749 l~s~~~~~~i~~~~~~~~~I~svafsp-dg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~D 827 (834)
..++. .....+......+..++|+| ++++++++ ++.|++||+.+++.+........+.+++|+|++++|++++.+
T Consensus 240 ~~~~~--~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 315 (349)
T 1jmx_B 240 LKTGK--THTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF 315 (349)
T ss_dssp TTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBS
T ss_pred ccCCc--EEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCC
Confidence 55442 12222333566788999999 99998888 889999999999987555555678899999999988888899
Q ss_pred CcEEEeC
Q 003279 828 KCVKIWK 834 (834)
Q Consensus 828 G~I~IWd 834 (834)
+.|++||
T Consensus 316 ~~v~v~d 322 (349)
T 1jmx_B 316 NDLAVFN 322 (349)
T ss_dssp SEEEEEE
T ss_pred CeEEEEe
Confidence 9999996
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.9e-21 Score=211.53 Aligned_cols=286 Identities=12% Similarity=0.070 Sum_probs=208.5
Q ss_pred EEEecCCCCCeEE-----EEEcCCCCEEEEEeC-CC--cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 003279 545 FQLIPASTSKVES-----CHFSPDGKLLATGGH-DK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 616 (834)
Q Consensus 545 ~~~l~gH~~~V~s-----l~fSpdg~~Lasgs~-Dg--~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 616 (834)
+..+..|...+.. .+|+|||++|++++. ++ .|++||+.+++......++...+..++|+||++.|++++.++
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~ 102 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR 102 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence 4556667666665 889999999999887 66 488899999988877777777776789999999999999999
Q ss_pred eEEEEecCCCCceeeeeccCCCCeEEEE--EccCCCcEEEEE---------------------eCCCcEEEEECCCCcee
Q 003279 617 TVRVWDTENPDYSLRTFTGHSTTVMSLD--FHPSKEDLLCSC---------------------DNNSEIRYWSINNGSCA 673 (834)
Q Consensus 617 ~I~IWDl~s~~~~i~~~~~h~~~V~sl~--fspdg~~llasg---------------------s~Dg~I~lwDl~s~~~i 673 (834)
.|++||+.+++. ...+..+...+.... +++++..+++.. +.+..|++||+.+++..
T Consensus 103 ~l~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 181 (388)
T 3pe7_A 103 NLMRVDLATLEE-NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST 181 (388)
T ss_dssp EEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE
T ss_pred eEEEEECCCCcc-eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE
Confidence 999999998764 334444555554444 478887554321 23468999999999877
Q ss_pred eEeecCCCeeEEEEec-CCCEEEEEEcC------CeEEEEECCCCeEEEEEeCCC--CCEEEEEEcCCCCEEEEEe--CC
Q 003279 674 GVFKCQSGATQMRFQP-RLGRILAAAIE------NYISILDVETQVCRLKLQGHK--NQVHSVCWNTSGEYLASVS--DE 742 (834)
Q Consensus 674 ~~~~~~~~i~~l~~sp-~g~~ll~~s~d------g~I~iwDl~t~~~~~~l~~h~--~~I~sl~~spdg~~Lasgs--Dg 742 (834)
........+..+.|+| +++.|+++..+ ..|.++|+..+... .+..+. ..+..++|+|||+.|+..+ ++
T Consensus 182 ~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 260 (388)
T 3pe7_A 182 VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLKG 260 (388)
T ss_dssp EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEETT
T ss_pred EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecCCC
Confidence 7777777799999999 99988887763 37888898765443 333343 3578899999999776544 23
Q ss_pred ----eEEEEEcCCCCCceeEEEeecCCCc---eEEEEEeCCCCEEEEE---------EcCCeEEEEECCCCeEEEeccCC
Q 003279 743 ----LVRVWSIGSGSKGECIHELSCTGNK---FHSCVFHPTFPSLLVI---------GCYETLELWNMTENKTLTLSAHD 806 (834)
Q Consensus 743 ----~I~IwDl~s~~~~~~i~~~~~~~~~---I~svafspdg~~L~sg---------s~dg~I~Iwdl~~~~~~~l~~h~ 806 (834)
.|++||+.++.. ..+..+..+... ...++|+|+|+.|++. ..+..|++||+.+++...+..|.
T Consensus 261 ~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~ 339 (388)
T 3pe7_A 261 SPDRFIYSADPETLEN-RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHD 339 (388)
T ss_dssp CCCEEEEEECTTTCCE-EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECC
T ss_pred CCcceEEEEecCCCce-EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEecccc
Confidence 399999998743 233333221000 1113799999988865 34558999999999887777776
Q ss_pred C-----------CeEEEEEeCCCCEEEEEe-cCCcEEEe
Q 003279 807 K-----------LVSSLAASTVNGMVASAS-HDKCVKIW 833 (834)
Q Consensus 807 ~-----------~V~~lafspdg~~LaSgs-~DG~I~IW 833 (834)
. .+.+++|+|||+.|+.++ .+|...||
T Consensus 340 ~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~ 378 (388)
T 3pe7_A 340 TSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY 378 (388)
T ss_dssp CCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred CcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence 6 688899999999877665 57777777
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.8e-20 Score=199.88 Aligned_cols=250 Identities=14% Similarity=0.154 Sum_probs=184.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCe--EEEEeccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEec
Q 003279 550 ASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDT 623 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~---Dg~I~IWd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl 623 (834)
.+...+..++|+|||+ |++++. ++.|++||+.+++ .+..+..+...+..++|+|++++|++++ .++.|.+|++
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 3446678899999999 555544 6899999998765 4445456778899999999999998888 6799999999
Q ss_pred CCCCc--eeeeecc---------CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC-CCceeeE--ee--cCCCeeEEEE
Q 003279 624 ENPDY--SLRTFTG---------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGV--FK--CQSGATQMRF 687 (834)
Q Consensus 624 ~s~~~--~i~~~~~---------h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~-s~~~i~~--~~--~~~~i~~l~~ 687 (834)
..... .+..+.. +...+.+++|+|+++ ++++...++.|.+||+. +++.... +. ....+..++|
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~ 194 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF 194 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence 64322 1222211 123488999999998 88777778999999998 5543322 22 2346788999
Q ss_pred ecCCCEEEEEE-cCCeEEEEECCC--CeE--EEEEeCCC------CCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC
Q 003279 688 QPRLGRILAAA-IENYISILDVET--QVC--RLKLQGHK------NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK 754 (834)
Q Consensus 688 sp~g~~ll~~s-~dg~I~iwDl~t--~~~--~~~l~~h~------~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~ 754 (834)
+|+++++++++ .++.|.+|++.. ++. +..+.... ..+..++|+|||++|+++. ++.|.+|++.....
T Consensus 195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~ 274 (347)
T 3hfq_A 195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH 274 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence 99999777765 468999999874 543 33333332 3588999999999875544 78999999974323
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEE--ECCCCeEEE
Q 003279 755 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELW--NMTENKTLT 801 (834)
Q Consensus 755 ~~~i~~~~~~~~~I~svafspdg~~L~sgs~d-g~I~Iw--dl~~~~~~~ 801 (834)
...+..+..+...+..++|+|+|++|++++.+ +.|.+| |..++++..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 275 LTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp EEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 35666666666778899999999999988875 799999 556677653
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-19 Score=197.36 Aligned_cols=262 Identities=12% Similarity=0.087 Sum_probs=190.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC----CcEEEEeCCC--CeE--EEEeccCCCCeEEEEECCCCCEEEEEe-CCCeEEEE
Q 003279 551 STSKVESCHFSPDGKLLATGGHD----KKAVLWCTES--FTV--KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVW 621 (834)
Q Consensus 551 H~~~V~sl~fSpdg~~Lasgs~D----g~I~IWd~~t--~~~--~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IW 621 (834)
|...+..++|+|||++|++++.+ +.|.+|++.. ++. +..+..+......+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 66778889999999999999886 7999998765 443 3444445667788888 788777776 57899999
Q ss_pred ecCCCCcee--ee---ecc--------CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce--------------ee
Q 003279 622 DTENPDYSL--RT---FTG--------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--------------AG 674 (834)
Q Consensus 622 Dl~s~~~~i--~~---~~~--------h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~--------------i~ 674 (834)
++....... .. ..+ +...+.+++|+|+++.+++++..++.|.+|++..... ..
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 997543211 11 111 1234588999999998887777789999999875431 12
Q ss_pred EeecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeE--EEEEe---CCCCCEEEEEEcCCCCEEEEEe-C--CeEE
Q 003279 675 VFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVC--RLKLQ---GHKNQVHSVCWNTSGEYLASVS-D--ELVR 745 (834)
Q Consensus 675 ~~~~~~~i~~l~~sp~g~~ll~~s-~dg~I~iwDl~t~~~--~~~l~---~h~~~I~sl~~spdg~~Lasgs-D--g~I~ 745 (834)
.......+..++|+|+++++++++ .++.|.+||+.++.. +..+. .+...+.+++|+|||++|+++. + +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 223356688999999999988888 589999999987754 33332 2345678999999999987766 5 6899
Q ss_pred EEEcCC-CCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEE--ECCCCeEEEec--cCCCCeEEEEEe
Q 003279 746 VWSIGS-GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELW--NMTENKTLTLS--AHDKLVSSLAAS 815 (834)
Q Consensus 746 IwDl~s-~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs-~dg~I~Iw--dl~~~~~~~l~--~h~~~V~~lafs 815 (834)
+|++.. ......+..+.. ...+..++|+|+|++|++++ .++.|.+| |..++++..+. .+...+.||.|.
T Consensus 286 v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 999962 222234555554 56778999999999999988 46788885 55677766443 345678999886
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5e-20 Score=221.51 Aligned_cols=245 Identities=14% Similarity=0.132 Sum_probs=184.5
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-----CeEEEEeccCCCC--------------eEEEEECCCCC
Q 003279 547 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQW--------------ITDVRFSPSLS 607 (834)
Q Consensus 547 ~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t-----~~~~~~l~~h~~~--------------I~~l~fspdg~ 607 (834)
.+..|...+.+++|||||++||++ .|+.|++||+.+ ++.......+... +.+++|+|||+
T Consensus 115 ~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~ 193 (706)
T 2z3z_A 115 YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGS 193 (706)
T ss_dssp EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSS
T ss_pred EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCC
Confidence 344567779999999999999995 679999999998 7776554444433 48999999999
Q ss_pred EEEEEe---------------------------------CCCeEEEEecCCCCceeeee-ccCCCCeEEEEEccCCCcEE
Q 003279 608 RLATSS---------------------------------ADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLL 653 (834)
Q Consensus 608 ~Latgs---------------------------------~Dg~I~IWDl~s~~~~i~~~-~~h~~~V~sl~fspdg~~ll 653 (834)
+|++++ .+..|++||+.++....... ..|...+.+++|+||++.++
T Consensus 194 ~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 273 (706)
T 2z3z_A 194 CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILY 273 (706)
T ss_dssp EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEE
T ss_pred EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEE
Confidence 999998 45789999998765322221 24677899999999998666
Q ss_pred EEEeCCC-----cEEEEECCCC-ceeeEeec--CC---CeeEEEEec--CCCEEEEEEcCCeEEEEECC-CCeEEEEEeC
Q 003279 654 CSCDNNS-----EIRYWSINNG-SCAGVFKC--QS---GATQMRFQP--RLGRILAAAIENYISILDVE-TQVCRLKLQG 719 (834)
Q Consensus 654 asgs~Dg-----~I~lwDl~s~-~~i~~~~~--~~---~i~~l~~sp--~g~~ll~~s~dg~I~iwDl~-t~~~~~~l~~ 719 (834)
+++ .++ .|++||+.++ ........ .. .+..+.|+| ++++++++..++.+.||++. ++..+..+..
T Consensus 274 ~~~-~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~ 352 (706)
T 2z3z_A 274 VAE-VNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK 352 (706)
T ss_dssp EEE-ECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC
T ss_pred EEE-eCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC
Confidence 444 344 8999999998 43333322 11 246789999 99988888888988888876 5677777887
Q ss_pred CCCCEEE-EEEcCCCCEEEEEe--CC----eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC----Ce
Q 003279 720 HKNQVHS-VCWNTSGEYLASVS--DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY----ET 788 (834)
Q Consensus 720 h~~~I~s-l~~spdg~~Lasgs--Dg----~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d----g~ 788 (834)
+...+.+ ++|+|+++.|++++ ++ .|+.||+.++. ...+. +...+.+++|+|+|++|++++.+ +.
T Consensus 353 ~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~----~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~ 427 (706)
T 2z3z_A 353 GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK----TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRK 427 (706)
T ss_dssp SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC----CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCE
T ss_pred CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC----ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcE
Confidence 8888877 79999999887665 44 67777776653 22232 45678999999999998877554 36
Q ss_pred EEEEECCCCe
Q 003279 789 LELWNMTENK 798 (834)
Q Consensus 789 I~Iwdl~~~~ 798 (834)
|++||+.+++
T Consensus 428 i~l~d~~~~~ 437 (706)
T 2z3z_A 428 VTVTNIGKGS 437 (706)
T ss_dssp EEEEESSSCE
T ss_pred EEEEECCCCe
Confidence 9999999887
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-19 Score=195.04 Aligned_cols=235 Identities=9% Similarity=0.086 Sum_probs=190.6
Q ss_pred CCCeEEEEECCCCCEEEEEeC-------CCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 003279 594 TQWITDVRFSPSLSRLATSSA-------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 666 (834)
Q Consensus 594 ~~~I~~l~fspdg~~Latgs~-------Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwD 666 (834)
...+..++|+|++++|++++. ++.|.+||..+++. +..+.. ...+.+++|+|+++.+++++..++.|.+||
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-TQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-EEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-EEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 356889999999999888874 56899999998764 444432 345788999999998888888889999999
Q ss_pred CCCCceeeEeecCC----------CeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCC
Q 003279 667 INNGSCAGVFKCQS----------GATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE 734 (834)
Q Consensus 667 l~s~~~i~~~~~~~----------~i~~l~~sp~g~~ll~~s~--dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~ 734 (834)
+.+++.+..+..+. .+.+++|+|+++++++++. ++.|.+||+++++.+..+..+...+.+++|+|+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 99999888887633 1688999999998888873 68899999999999988876666788999999999
Q ss_pred EEEEEe-CCeEEEEEcCCCCCceeEEEeec----CCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEeccCCCC
Q 003279 735 YLASVS-DELVRVWSIGSGSKGECIHELSC----TGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKL 808 (834)
Q Consensus 735 ~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~----~~~~I~svafspdg~~L~sgs~d-g~I~Iwdl~~~~~~~l~~h~~~ 808 (834)
+|+++. ++.|.+||+.++ +.+..+.. +...+..++|+|+++++++++.+ +.|.+||+.+++.+.......
T Consensus 198 ~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~- 273 (353)
T 3vgz_A 198 RLYTTNADGELITIDTADN---KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE- 273 (353)
T ss_dssp EEEEECTTSEEEEEETTTT---EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-
T ss_pred EEEEEcCCCeEEEEECCCC---eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-
Confidence 999888 899999999987 55555543 45567889999999988887765 799999999998874333222
Q ss_pred eEEEEEeCCCCEEEEEe-cCCcEEEeC
Q 003279 809 VSSLAASTVNGMVASAS-HDKCVKIWK 834 (834)
Q Consensus 809 V~~lafspdg~~LaSgs-~DG~I~IWd 834 (834)
..+++|+|+++++++++ .++.|.+||
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEE
Confidence 36799999999665555 689999996
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-19 Score=195.49 Aligned_cols=268 Identities=9% Similarity=0.072 Sum_probs=188.7
Q ss_pred CCCEEEEEeC----CCcEEEEeC--CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC----CeEEEEecCCC--Cc-e
Q 003279 563 DGKLLATGGH----DKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENP--DY-S 629 (834)
Q Consensus 563 dg~~Lasgs~----Dg~I~IWd~--~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D----g~I~IWDl~s~--~~-~ 629 (834)
...++++|+. ++.|++|++ ++++.......+...+..++|+||+++|++++.+ +.|.+|+++.. .. .
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~ 91 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL 91 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE
Confidence 3345666643 568888865 4555443222267778899999999999999886 79999998764 21 2
Q ss_pred eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeE----eec-----------CCCeeEEEEecCCCEE
Q 003279 630 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKC-----------QSGATQMRFQPRLGRI 694 (834)
Q Consensus 630 i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~----~~~-----------~~~i~~l~~sp~g~~l 694 (834)
+.....+...+..+++ +++.++++...++.|.+|++.....+.. +.. ...+.+++|+|+++++
T Consensus 92 ~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l 169 (361)
T 3scy_A 92 LNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL 169 (361)
T ss_dssp EEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE
T ss_pred eeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE
Confidence 2333445567788888 7776776666789999999975433221 111 1234789999999988
Q ss_pred EEEEc-CCeEEEEECCCCe-------E------EEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeE
Q 003279 695 LAAAI-ENYISILDVETQV-------C------RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECI 758 (834)
Q Consensus 695 l~~s~-dg~I~iwDl~t~~-------~------~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i 758 (834)
++++. ++.|.+|++.... . ......+...+.+++|+|+|++|+++. ++.|.+||+.++.. ..+
T Consensus 170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~-~~~ 248 (361)
T 3scy_A 170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML-DEI 248 (361)
T ss_dssp EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE-EEE
T ss_pred EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce-EEe
Confidence 77775 7899999887533 1 122223456788999999999887766 78999999986521 223
Q ss_pred EEee---cCCCceEEEEEeCCCCEEEEEEcC--CeEEEEECC--CCeEE--EeccCCCCeEEEEEeCCCCEEEEEe-cCC
Q 003279 759 HELS---CTGNKFHSCVFHPTFPSLLVIGCY--ETLELWNMT--ENKTL--TLSAHDKLVSSLAASTVNGMVASAS-HDK 828 (834)
Q Consensus 759 ~~~~---~~~~~I~svafspdg~~L~sgs~d--g~I~Iwdl~--~~~~~--~l~~h~~~V~~lafspdg~~LaSgs-~DG 828 (834)
..+. .+......++|+|+|++|+++..+ +.|.+|++. +++.. ........+.+++|+|||++|++++ .++
T Consensus 249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~ 328 (361)
T 3scy_A 249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTN 328 (361)
T ss_dssp EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTT
T ss_pred EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCC
Confidence 3332 233456899999999999887765 799999985 45532 2222256789999999999888887 678
Q ss_pred cEEEe
Q 003279 829 CVKIW 833 (834)
Q Consensus 829 ~I~IW 833 (834)
.|.+|
T Consensus 329 ~v~v~ 333 (361)
T 3scy_A 329 VIQIF 333 (361)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 89996
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-19 Score=206.90 Aligned_cols=240 Identities=10% Similarity=0.090 Sum_probs=177.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-----------eEE-----EEeccCCCCeEEEEECCCCCEEE----E
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----------TVK-----STLEEHTQWITDVRFSPSLSRLA----T 611 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~-----------~~~-----~~l~~h~~~I~~l~fspdg~~La----t 611 (834)
...+..+++++++.+|++++.|+ |+||+.... ... ..+ .+...|++++|+|++++|+ +
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEec
Confidence 34588999999999999999887 888864311 111 112 3567899999999999999 7
Q ss_pred EeCCCeEEEEecCCC-----Cc-----eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCC
Q 003279 612 SSADRTVRVWDTENP-----DY-----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQS 680 (834)
Q Consensus 612 gs~Dg~I~IWDl~s~-----~~-----~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~ 680 (834)
++.|+.|+|||+.+. .. .+..+.+|...|.+++|+|+...+|++++.||.|++||++++..+.... +..
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~ 193 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV 193 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC
Confidence 888999999998753 11 2456677999999999999977789999999999999999886654433 467
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC-------CCEEEEEEcCCCCEEEEEe--CC------eEE
Q 003279 681 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-------NQVHSVCWNTSGEYLASVS--DE------LVR 745 (834)
Q Consensus 681 ~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~-------~~I~sl~~spdg~~Lasgs--Dg------~I~ 745 (834)
.+.+++|+|++.+|++++.||.|++||++ +.....+..|. ..|.+++|++++.++++.+ || .++
T Consensus 194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~ 272 (434)
T 2oit_A 194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVV 272 (434)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceE
Confidence 89999999999999999999999999998 55555554432 3799999999998887655 53 399
Q ss_pred EEEcCCCCC--ceeEEEee-------cCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEC
Q 003279 746 VWSIGSGSK--GECIHELS-------CTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM 794 (834)
Q Consensus 746 IwDl~s~~~--~~~i~~~~-------~~~~~I~svafspdg~~L~sgs~dg-~I~Iwdl 794 (834)
+|++++... ......+. ........+.+.++.+++++++... .|.|+..
T Consensus 273 i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 273 MALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp EEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred EEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 999986532 11222211 1222333444557777777776643 4555554
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=226.62 Aligned_cols=271 Identities=11% Similarity=0.065 Sum_probs=199.3
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCC---CeEEEEECCCCCEEEEEeC---------CCeEEEEecC
Q 003279 557 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSA---------DRTVRVWDTE 624 (834)
Q Consensus 557 sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~---~I~~l~fspdg~~Latgs~---------Dg~I~IWDl~ 624 (834)
+++|+|||+++++ +.|+.|++||+.+++....+..|.. .|.+++|+|||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6899999965554 5699999999999998877766544 4899999999999999876 7899999998
Q ss_pred CCCcee-eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC--C-----------------CeeE
Q 003279 625 NPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--S-----------------GATQ 684 (834)
Q Consensus 625 s~~~~i-~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~--~-----------------~i~~ 684 (834)
+++... ..+ ...+.+++|+|||+.++++ . ++.|++||+.++++....... . ...+
T Consensus 99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~-~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYV-Y-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp TTEECCSSCC---CSSBCCEEECSSTTCEEEE-E-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred CCccccceec---CcccccceECCCCCEEEEE-E-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 765310 222 2568899999999876654 3 789999999988765433221 1 1248
Q ss_pred EEEecCCCEEEEEEcCC----------------------------------eEEEEECCCCeEE--EE------EeCCCC
Q 003279 685 MRFQPRLGRILAAAIEN----------------------------------YISILDVETQVCR--LK------LQGHKN 722 (834)
Q Consensus 685 l~~sp~g~~ll~~s~dg----------------------------------~I~iwDl~t~~~~--~~------l~~h~~ 722 (834)
+.|+|||++|++++.|. .|++||+.+++.. .. +.+|..
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 253 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY 253 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence 99999999999988652 7889999987642 11 235778
Q ss_pred CEEEEEEcCCCCEEEEEe-C----CeEEEEE----cCCCCCceeEE-EeecCCCceE-----EEEEeCCCCEEEEE--Ec
Q 003279 723 QVHSVCWNTSGEYLASVS-D----ELVRVWS----IGSGSKGECIH-ELSCTGNKFH-----SCVFHPTFPSLLVI--GC 785 (834)
Q Consensus 723 ~I~sl~~spdg~~Lasgs-D----g~I~IwD----l~s~~~~~~i~-~~~~~~~~I~-----svafspdg~~L~sg--s~ 785 (834)
.+.+++|+||++++++.. . ..|.+|| +.++.....+. ....+...+. .++|+|+|+.|+.. ..
T Consensus 254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 333 (719)
T 1z68_A 254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK 333 (719)
T ss_dssp EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT
T ss_pred eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEcc
Confidence 899999999988777754 2 2588899 76653222221 0134455555 78999999976653 33
Q ss_pred CC--eEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecC-----CcEEEeC
Q 003279 786 YE--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD-----KCVKIWK 834 (834)
Q Consensus 786 dg--~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~D-----G~I~IWd 834 (834)
++ .|++||+.+++...+..+...|..+.++ +++.|+..+.+ +.++||+
T Consensus 334 ~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 334 DGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp TSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred CCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 44 7888999888876777777778888888 88877766654 7788883
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-18 Score=192.32 Aligned_cols=267 Identities=11% Similarity=0.059 Sum_probs=187.0
Q ss_pred EEEEEeCC--CcEEEEeC--CCCeEEEE--ec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC-CCCceeeeecc-C
Q 003279 566 LLATGGHD--KKAVLWCT--ESFTVKST--LE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NPDYSLRTFTG-H 636 (834)
Q Consensus 566 ~Lasgs~D--g~I~IWd~--~t~~~~~~--l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~-s~~~~i~~~~~-h 636 (834)
+|++|+.. +.|.+|++ ++++.... .. .....+..++|+|++++|++++.+ .|.+|++. ++.. ...... .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~-~~~~~~~~ 81 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI-VHEASHPI 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE-EEEEEEEC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE-EEeeEeec
Confidence 45666653 46877764 56654322 21 234568899999999999999888 99999997 5443 222111 1
Q ss_pred CCCeEEEEEccCCCc-EEEEEe-------------CCCcEEEEECC-CCceeeEee-----cCCCeeEEEEecCCCEEEE
Q 003279 637 STTVMSLDFHPSKED-LLCSCD-------------NNSEIRYWSIN-NGSCAGVFK-----CQSGATQMRFQPRLGRILA 696 (834)
Q Consensus 637 ~~~V~sl~fspdg~~-llasgs-------------~Dg~I~lwDl~-s~~~i~~~~-----~~~~i~~l~~sp~g~~ll~ 696 (834)
.+.+.+++|+|+++. ++++++ .++.+.+|++. +++....+. ....+.+++|+|+++++++
T Consensus 82 ~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~ 161 (365)
T 1jof_A 82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS 161 (365)
T ss_dssp CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence 123667899999886 344543 68999999997 466554443 3457899999999999888
Q ss_pred EEc-CCeEEEEECC-CCeEE--EEEe--CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCC--CCCceeEEEee---c
Q 003279 697 AAI-ENYISILDVE-TQVCR--LKLQ--GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS--GSKGECIHELS---C 763 (834)
Q Consensus 697 ~s~-dg~I~iwDl~-t~~~~--~~l~--~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s--~~~~~~i~~~~---~ 763 (834)
+.. ++.|++||+. +++.. ..+. .|...+..++|+|||++|+++. ++.|.+|++.. +........+. .
T Consensus 162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~ 241 (365)
T 1jof_A 162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP 241 (365)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC
Confidence 775 5899999998 67543 3343 2456799999999999988876 67999998763 32110011221 1
Q ss_pred C----CC------ceEEEE-EeCCCCEEEEEEcCC------eEEEEECC-CCeEEE----eccCCCCeEEEEEeC---CC
Q 003279 764 T----GN------KFHSCV-FHPTFPSLLVIGCYE------TLELWNMT-ENKTLT----LSAHDKLVSSLAAST---VN 818 (834)
Q Consensus 764 ~----~~------~I~sva-fspdg~~L~sgs~dg------~I~Iwdl~-~~~~~~----l~~h~~~V~~lafsp---dg 818 (834)
. .. .+..++ |+|+|++|+++..+. .|.+|++. +++... ...+...+..++|+| ||
T Consensus 242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence 1 11 478899 999999988776533 89999996 566543 223556678899999 89
Q ss_pred CEEEEEecC-CcEEEeC
Q 003279 819 GMVASASHD-KCVKIWK 834 (834)
Q Consensus 819 ~~LaSgs~D-G~I~IWd 834 (834)
++|++++.+ +.|.||+
T Consensus 322 ~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYR 338 (365)
T ss_dssp TEEEEECSSSCEEEEEE
T ss_pred CEEEEEEcCCCeEEEEE
Confidence 999998864 8999995
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=200.24 Aligned_cols=272 Identities=12% Similarity=0.026 Sum_probs=192.7
Q ss_pred eEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceee
Q 003279 555 VESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 631 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~D---g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~ 631 (834)
+.+++|+|||++|+.+..+ ..|++||+.+++.......+...+..+.|+||+++|+.++.++.|++||+.++.. ..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~-~~ 116 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE-QV 116 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE-EE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc-EE
Confidence 7788999999998877543 4788899998876554443333344488999999999999999999999987653 33
Q ss_pred eeccCCCCeEE-------------------EEEccCCCcEEEEE----eCCCcEEEEECCCCceeeEeecCCCeeEEEEe
Q 003279 632 TFTGHSTTVMS-------------------LDFHPSKEDLLCSC----DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ 688 (834)
Q Consensus 632 ~~~~h~~~V~s-------------------l~fspdg~~llasg----s~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~s 688 (834)
....+...... ++|+|+++.+++.. ..+..|++||+.+++..........+..+.|+
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~s 196 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYR 196 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEE
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceEC
Confidence 33333332222 34677776555432 45678999999998887777777789999999
Q ss_pred c-CCCEEEEEEcC------CeEEEEECCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCC
Q 003279 689 P-RLGRILAAAIE------NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSK 754 (834)
Q Consensus 689 p-~g~~ll~~s~d------g~I~iwDl~t~~~~~~l~~h-~~~I~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~ 754 (834)
| +++.|++++.+ ..|.+||+..+......... ...+..++|+|+|++|+..+ + +.|++||+.++..
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (396)
T 3c5m_A 197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN 276 (396)
T ss_dssp TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred CCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence 9 78877777653 36899998766533322211 23578899999999777665 3 3499999987632
Q ss_pred ceeEEEeecCCCceEEEEEeC-CCCEEEEEE----------------cCCeEEEEECCCCeEEEeccCCC----------
Q 003279 755 GECIHELSCTGNKFHSCVFHP-TFPSLLVIG----------------CYETLELWNMTENKTLTLSAHDK---------- 807 (834)
Q Consensus 755 ~~~i~~~~~~~~~I~svafsp-dg~~L~sgs----------------~dg~I~Iwdl~~~~~~~l~~h~~---------- 807 (834)
..+..+. ... +.|+| +|+.|++++ .+..|++||+.+++...+..+..
T Consensus 277 -~~l~~~~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 350 (396)
T 3c5m_A 277 -EEVMVMP----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQ 350 (396)
T ss_dssp -EEEEECC----SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSS
T ss_pred -EEeeeCC----CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccccccccc
Confidence 2222221 233 89999 999887755 23689999999887766665554
Q ss_pred -CeEEEEEeCCCCEEEEEec-CCcEEEe
Q 003279 808 -LVSSLAASTVNGMVASASH-DKCVKIW 833 (834)
Q Consensus 808 -~V~~lafspdg~~LaSgs~-DG~I~IW 833 (834)
.+..++|+|||+.|+.++. ++...||
T Consensus 351 ~~~~~~~~s~dg~~l~~~s~~~~~~~l~ 378 (396)
T 3c5m_A 351 ITHPHPSFTPNDDGVLFTSDFEGVPAIY 378 (396)
T ss_dssp TTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred CCCCCceEccCCCeEEEEecCCCCceEE
Confidence 2667899999998887764 5666665
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-18 Score=186.47 Aligned_cols=273 Identities=10% Similarity=0.056 Sum_probs=189.0
Q ss_pred cCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCC-CCeEEEEEcCCCCEEEE-EeCCCcEE
Q 003279 500 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLAT-GGHDKKAV 577 (834)
Q Consensus 500 ~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~-~~V~sl~fSpdg~~Las-gs~Dg~I~ 577 (834)
.....++++++.++.|.+|+.... . .+..+..+. ..+..++|+|||+++++ +..++.|.
T Consensus 8 ~~~~~~~v~~~~~~~v~~~d~~~~----------------~---~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~ 68 (349)
T 1jmx_B 8 KAGHEYMIVTNYPNNLHVVDVASD----------------T---VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIY 68 (349)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTT----------------E---EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEE
T ss_pred cCCCEEEEEeCCCCeEEEEECCCC----------------c---EEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEE
Confidence 344567888888999999965322 1 122333222 25788999999986654 45689999
Q ss_pred EEeCCCCeEEEEeccCC------CCeEEEEECCCCCEEEEEeCC------------CeEEEEecCCCCc--eeeeeccCC
Q 003279 578 LWCTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSSAD------------RTVRVWDTENPDY--SLRTFTGHS 637 (834)
Q Consensus 578 IWd~~t~~~~~~l~~h~------~~I~~l~fspdg~~Latgs~D------------g~I~IWDl~s~~~--~i~~~~~h~ 637 (834)
+||+.+++.+..+..+. ..+.+++|+|++++|++++.+ +.|.+||+.++.. .+..+. +.
T Consensus 69 ~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~ 147 (349)
T 1jmx_B 69 GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MP 147 (349)
T ss_dssp EEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CC
T ss_pred EEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CC
Confidence 99999999887775332 337899999999999998865 8999999987432 122333 34
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCC-------------------------CeeEEEEecCCC
Q 003279 638 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-------------------------GATQMRFQPRLG 692 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~-------------------------~i~~l~~sp~g~ 692 (834)
..+.+++|+|++. +++ ++ +.|++||+.+++.+..+.... ....+++++++.
T Consensus 148 ~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 223 (349)
T 1jmx_B 148 RQVYLMRAADDGS-LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK 223 (349)
T ss_dssp SSCCCEEECTTSC-EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred CcccceeECCCCc-EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCc
Confidence 4689999999988 654 43 349999999998887765432 233455554432
Q ss_pred EEEEEEcC-CeEEEEECCCCeE-EEEEeCCCCCEEEEEEcC-CCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003279 693 RILAAAIE-NYISILDVETQVC-RLKLQGHKNQVHSVCWNT-SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFH 769 (834)
Q Consensus 693 ~ll~~s~d-g~I~iwDl~t~~~-~~~l~~h~~~I~sl~~sp-dg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 769 (834)
........ ..+..+|..+++. ...+..+...+.+++|+| ++++++++ ++.|++||+.++ +.+..+.. ...+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~-~~~~~ 298 (349)
T 1jmx_B 224 QDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQR---KLIKAANL-DHTYY 298 (349)
T ss_dssp ---CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTT---EEEEEEEC-SSCCC
T ss_pred CCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccC---eEEEEEcC-CCCcc
Confidence 11111111 1222355555432 222333566789999999 99999988 889999999887 55555543 34577
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE
Q 003279 770 SCVFHPTFPSLLVIGCYETLELWNMTENKTLT 801 (834)
Q Consensus 770 svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~ 801 (834)
+++|+|++++|++++.++.|++||+.+++.+.
T Consensus 299 ~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~ 330 (349)
T 1jmx_B 299 CVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 330 (349)
T ss_dssp EEEECSSSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred ceEECCCCCEEEEecCCCeEEEEeccccceee
Confidence 89999999999998888999999999988773
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-19 Score=216.58 Aligned_cols=274 Identities=11% Similarity=0.028 Sum_probs=189.5
Q ss_pred CeEEEEEcCCCCEEEEEeC---------CCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC
Q 003279 554 KVESCHFSPDGKLLATGGH---------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~---------Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 624 (834)
.|.+++|||||++||+++. ++.|++||+.+++.+... .....+.+++|+|||+.|+++. ++.|++||+.
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~ 138 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP 138 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence 4899999999999999876 789999999998773111 1135689999999999999986 7899999998
Q ss_pred CCCceeeeeccCCCCe-----------------EEEEEccCCCcEEEEEeCCC---------------------------
Q 003279 625 NPDYSLRTFTGHSTTV-----------------MSLDFHPSKEDLLCSCDNNS--------------------------- 660 (834)
Q Consensus 625 s~~~~i~~~~~h~~~V-----------------~sl~fspdg~~llasgs~Dg--------------------------- 660 (834)
++.....+..++...| .+++|+|||+.++++...++
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g 218 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG 218 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence 7664222223333322 48999999987665543322
Q ss_pred ------cEEEEECCCCcee---eE-----e-ecCCCeeEEEEecCCCEEEEEEcC----CeEEEEE----CCCCeEEEEE
Q 003279 661 ------EIRYWSINNGSCA---GV-----F-KCQSGATQMRFQPRLGRILAAAIE----NYISILD----VETQVCRLKL 717 (834)
Q Consensus 661 ------~I~lwDl~s~~~i---~~-----~-~~~~~i~~l~~sp~g~~ll~~s~d----g~I~iwD----l~t~~~~~~l 717 (834)
.|++||+.+++.. .. + .+...+..++|+|++..+++.... ..|.+|| +.++++...+
T Consensus 219 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~ 298 (719)
T 1z68_A 219 AKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQ 298 (719)
T ss_dssp SCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGG
T ss_pred CCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEE
Confidence 7889999987753 11 1 123357899999996655554332 2488999 8877665444
Q ss_pred ----eCCCCCEE-----EEEEcCCCCEEEE--Ee-CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003279 718 ----QGHKNQVH-----SVCWNTSGEYLAS--VS-DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 718 ----~~h~~~I~-----sl~~spdg~~Las--gs-Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sg 783 (834)
.+|...+. ++.|+|||+.|+. +. ++ .|++||+.++. ...+..+...+..+.++ ++..|+..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~----~~~lt~~~~~v~~~~~~-d~~~i~~~ 373 (719)
T 1z68_A 299 EHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN----AIQITSGKWEAINIFRV-TQDSLFYS 373 (719)
T ss_dssp EEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT----CEECSCSSSCEEEEEEE-CSSEEEEE
T ss_pred ecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc----eEecccCceEEEEEEEE-eCCEEEEE
Confidence 46777776 8899999996554 33 44 67777876653 33444555667777777 88888888
Q ss_pred EcC-----CeEEEEECC--CC--eEEEec----cCCCCeEEEEEeCCCCEEEE-EecC--CcEEEeC
Q 003279 784 GCY-----ETLELWNMT--EN--KTLTLS----AHDKLVSSLAASTVNGMVAS-ASHD--KCVKIWK 834 (834)
Q Consensus 784 s~d-----g~I~Iwdl~--~~--~~~~l~----~h~~~V~~lafspdg~~LaS-gs~D--G~I~IWd 834 (834)
+.+ +.+++|.+. ++ +...+. +|...+..+.|+|++++|+. ++.+ ..+.+||
T Consensus 374 ~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d 440 (719)
T 1z68_A 374 SNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHD 440 (719)
T ss_dssp ESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEEC
T ss_pred EecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEE
Confidence 765 667777664 34 223332 26677889999999987664 4333 3466664
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-17 Score=183.14 Aligned_cols=246 Identities=12% Similarity=0.074 Sum_probs=175.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEEEecc-CCCCeEEEEECCCCCE--EEEEe-------------
Q 003279 551 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEE-HTQWITDVRFSPSLSR--LATSS------------- 613 (834)
Q Consensus 551 H~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~-t~~~~~~l~~-h~~~I~~l~fspdg~~--Latgs------------- 613 (834)
+...+..++|+|||++|++++.+ .|.+|++. +++....... ..+.+.+++|+|++++ +++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 44568899999999999999888 99999997 7776543321 1123667999999994 45553
Q ss_pred CCCeEEEEecCCCCceeeeec----cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC-CCceee--Eee---cCCCee
Q 003279 614 ADRTVRVWDTENPDYSLRTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAG--VFK---CQSGAT 683 (834)
Q Consensus 614 ~Dg~I~IWDl~s~~~~i~~~~----~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~-s~~~i~--~~~---~~~~i~ 683 (834)
.++.+.+|++.........+. .+...+.+++|+|+|+.++++...++.|++||+. +++... .+. +...+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 689999999974332222222 2556799999999998666554457899999998 676532 333 145689
Q ss_pred EEEEecCCCEEEEEEc-CCeEEEEECC--CCeEE---EEEeC-------CCC------CEEEEE-EcCCCCEEEEEe--C
Q 003279 684 QMRFQPRLGRILAAAI-ENYISILDVE--TQVCR---LKLQG-------HKN------QVHSVC-WNTSGEYLASVS--D 741 (834)
Q Consensus 684 ~l~~sp~g~~ll~~s~-dg~I~iwDl~--t~~~~---~~l~~-------h~~------~I~sl~-~spdg~~Lasgs--D 741 (834)
.++|+|+++++++++. ++.|.+|++. +++.. ..+.. |.. .+.+++ |+|||++|+++. +
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 9999999999988876 6899999765 55542 12221 122 488999 999999887765 3
Q ss_pred C-----eEEEEEcC-CCCCceeEE-EeecCCCceEEEEEeC---CCCEEEEEEcC-CeEEEEECCCCe
Q 003279 742 E-----LVRVWSIG-SGSKGECIH-ELSCTGNKFHSCVFHP---TFPSLLVIGCY-ETLELWNMTENK 798 (834)
Q Consensus 742 g-----~I~IwDl~-s~~~~~~i~-~~~~~~~~I~svafsp---dg~~L~sgs~d-g~I~Iwdl~~~~ 798 (834)
+ .|.+|++. ++. ...+. ....+...+..++|+| +|++|++++.+ +.|.+|+++...
T Consensus 277 ~~~~~~~i~v~~~~~~g~-~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGS-IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp STTSCCEEEEEEECTTSC-EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred CCCCCCeEEEEEECCCCC-EEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 3 89999996 442 12111 2333444567789999 89999998875 799999987763
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.7e-19 Score=206.21 Aligned_cols=229 Identities=10% Similarity=0.068 Sum_probs=177.6
Q ss_pred CCCeEEEEECCCCCEEEEEeC-CCeEEEEecCCCCceeeeeccCC-CCeEEEEEccCCCcEEEEEeC---CCcEEEEECC
Q 003279 594 TQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDN---NSEIRYWSIN 668 (834)
Q Consensus 594 ~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~s~~~~i~~~~~h~-~~V~sl~fspdg~~llasgs~---Dg~I~lwDl~ 668 (834)
..+|++++|+|||++||+++. ||++.||++..+. ...+..|. ..|.+++|+|+ .++++++. +....+|.+.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~--~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE--TVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE--EEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCC--cEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEe
Confidence 457999999999999999887 9999999996543 44455555 68999999998 57777764 4445555443
Q ss_pred C---CceeeEeecCCCeeEEEEecCCCE-EEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C--
Q 003279 669 N---GSCAGVFKCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-- 741 (834)
Q Consensus 669 s---~~~i~~~~~~~~i~~l~~sp~g~~-ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-D-- 741 (834)
. +... .+.....+...+|+|+++. +++.+.++.+.+||+.+++.......+. .+++|+|||++|++++ +
T Consensus 97 ~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~ 172 (582)
T 3o4h_A 97 TSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGG 172 (582)
T ss_dssp TTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEET
T ss_pred ccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCC
Confidence 2 2222 3434445667799998865 4455556667799999987665554333 7899999999999776 5
Q ss_pred --CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCeEEEeccCCCCeEEEE----
Q 003279 742 --ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTLSAHDKLVSSLA---- 813 (834)
Q Consensus 742 --g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg--~I~Iwdl~~~~~~~l~~h~~~V~~la---- 813 (834)
..|++||+.++. ...+..+...+..++|+|||+.|+++..++ .|++||+.+++...+..|...+..++
T Consensus 173 ~~~~i~~~d~~~g~----~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 248 (582)
T 3o4h_A 173 GRVSLFTSNLSSGG----LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAI 248 (582)
T ss_dssp TEEEEEEEETTTCC----CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEE
T ss_pred CCeEEEEEcCCCCC----ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccc
Confidence 689999998873 235566778899999999999999888888 89999999988876667777777777
Q ss_pred ----EeCCCCEEEEEecCCcEEEeC
Q 003279 814 ----ASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 814 ----fspdg~~LaSgs~DG~I~IWd 834 (834)
|+|||.++++++.||.++||+
T Consensus 249 ~~~~~spdg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 249 TWLGYLPDGRLAVVARREGRSAVFI 273 (582)
T ss_dssp EEEEECTTSCEEEEEEETTEEEEEE
T ss_pred cceeEcCCCcEEEEEEcCCcEEEEE
Confidence 999999999999999999995
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-17 Score=203.08 Aligned_cols=266 Identities=13% Similarity=0.078 Sum_probs=192.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCC-----eEEEEECCCCCEEEEEeCC---------CeE
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----ITDVRFSPSLSRLATSSAD---------RTV 618 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~-----I~~l~fspdg~~Latgs~D---------g~I 618 (834)
....++.|+|||++|+++ |+.|++||+.+++....+.+|... ..++.|+|||++|++++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 346689999999999886 899999999999988888777643 2448899999999999876 566
Q ss_pred EEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC-------------------
Q 003279 619 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------------- 679 (834)
Q Consensus 619 ~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~------------------- 679 (834)
.+||+.++. ...+..|...+..++|+|||+.++++ .++.|++||+.++.........
T Consensus 95 ~~~d~~~~~--~~~l~~~~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 95 DIYDLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEEETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEEECCCCc--EEEcccCCCcceeeEECCCCCEEEEE--ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence 799999865 44566778889999999999977655 3789999999988755432211
Q ss_pred CCeeEEEEecCCCEEEEEEcCC------------------------------------eEEEEECCC---Ce--EEEEEe
Q 003279 680 SGATQMRFQPRLGRILAAAIEN------------------------------------YISILDVET---QV--CRLKLQ 718 (834)
Q Consensus 680 ~~i~~l~~sp~g~~ll~~s~dg------------------------------------~I~iwDl~t---~~--~~~~l~ 718 (834)
.....+.|+|||++|+.+..|. .|++||+.+ +. ....+.
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT 250 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence 1123489999999999876321 588899998 72 223343
Q ss_pred ------CCCCCEEEEEEcCCCCEEEEEe--C---CeEEEEEcCCCCC---ceeEEEe--ecCCCce-----EEEEEeCCC
Q 003279 719 ------GHKNQVHSVCWNTSGEYLASVS--D---ELVRVWSIGSGSK---GECIHEL--SCTGNKF-----HSCVFHPTF 777 (834)
Q Consensus 719 ------~h~~~I~sl~~spdg~~Lasgs--D---g~I~IwDl~s~~~---~~~i~~~--~~~~~~I-----~svafspdg 777 (834)
+|...+..++|+|||++++... + ..|++||+.++.. ...+..+ ..+...+ ..++|+|||
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG 330 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG 330 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC
Confidence 3777899999999999776654 2 2799999998741 0001111 2333333 367899999
Q ss_pred CEEE-EEEc-CC--eEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEe
Q 003279 778 PSLL-VIGC-YE--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 778 ~~L~-sgs~-dg--~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs 825 (834)
+.|+ ..+. +| .|++||+.+++...+......|..+.+ +|++.|+..+
T Consensus 331 ~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i~f~~ 381 (740)
T 4a5s_A 331 NSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYYIS 381 (740)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEEEEEE
T ss_pred CEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEEEEEE
Confidence 9877 5554 33 799999999888777766667776643 4466555443
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.78 E-value=8.1e-18 Score=191.43 Aligned_cols=212 Identities=14% Similarity=0.157 Sum_probs=160.1
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC---------ceee-----eeccCCCC
Q 003279 574 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---------YSLR-----TFTGHSTT 639 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~---------~~i~-----~~~~h~~~ 639 (834)
+.|++|+.... .+...++.+++++++.+|++++.|+ |+||+..... ..+. ....+...
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 46888864321 2345689999999999999999988 8888754210 0011 11235678
Q ss_pred eEEEEEccCCCcEEE---EEeCCCcEEEEECCCC--------cee---eEee-cCCCeeEEEEecC-CCEEEEEEcCCeE
Q 003279 640 VMSLDFHPSKEDLLC---SCDNNSEIRYWSINNG--------SCA---GVFK-CQSGATQMRFQPR-LGRILAAAIENYI 703 (834)
Q Consensus 640 V~sl~fspdg~~lla---sgs~Dg~I~lwDl~s~--------~~i---~~~~-~~~~i~~l~~sp~-g~~ll~~s~dg~I 703 (834)
|.+++|+|++..+++ +++.|+.|++||+.++ +.+ ..+. +...|.+++|+|+ +..|++++.||.|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 999999999886665 7888999999998754 222 2222 4577999999998 7889999999999
Q ss_pred EEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-------CCceEEEEEeC
Q 003279 704 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCVFHP 775 (834)
Q Consensus 704 ~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-------~~~I~svafsp 775 (834)
++||++++..+....+|...|.+++|+|+|++|++++ |+.|++||++ + .....+..+ ...+.+++|++
T Consensus 175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~---~~~~~~~~~~~~~~~~~~~v~~v~w~~ 250 (434)
T 2oit_A 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L---QEKKVIPCPPFYESDHPVRVLDVLWIG 250 (434)
T ss_dssp EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-C---CEEEEECCCTTCCTTSCEEEEEEEEEE
T ss_pred EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-C---cccccccCCcccCCCCceeEEEEEEec
Confidence 9999999987777778999999999999999999999 9999999998 3 233333322 23789999999
Q ss_pred CCCEEEEEE-cCC------eEEEEECCCC
Q 003279 776 TFPSLLVIG-CYE------TLELWNMTEN 797 (834)
Q Consensus 776 dg~~L~sgs-~dg------~I~Iwdl~~~ 797 (834)
++.++++.+ .+| .+++|++.+.
T Consensus 251 ~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 251 TYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CceEEEEEccCCCccCCCCceEEEEeccC
Confidence 988776543 332 4999999764
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-17 Score=197.74 Aligned_cols=281 Identities=10% Similarity=0.053 Sum_probs=198.7
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEE--eCCCcEEEEeCCCCeEEEEeccCCCCeE---------EEEEC--CCCCE-EEEE
Q 003279 547 LIPASTSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWIT---------DVRFS--PSLSR-LATS 612 (834)
Q Consensus 547 ~l~gH~~~V~sl~fSpdg~~Lasg--s~Dg~I~IWd~~t~~~~~~l~~h~~~I~---------~l~fs--pdg~~-Latg 612 (834)
.+.+|...|.+++|++++-++++. +.++...||....+.....+..|...|. .+.|+ ||++. |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 456788999999999887666666 5578899998655555667777776666 66665 99998 7766
Q ss_pred eC-CCeEEEEecC--C-CCceeeeecc-----CCCCeEEEEEccCCCcEEEEEeCC---------CcEEEEECCC-----
Q 003279 613 SA-DRTVRVWDTE--N-PDYSLRTFTG-----HSTTVMSLDFHPSKEDLLCSCDNN---------SEIRYWSINN----- 669 (834)
Q Consensus 613 s~-Dg~I~IWDl~--s-~~~~i~~~~~-----h~~~V~sl~fspdg~~llasgs~D---------g~I~lwDl~s----- 669 (834)
+. +..|++|++. . +. ...+.. |...+.+++|+|||+.++++.... ..|++||+.+
T Consensus 98 ~~~~~~l~~~~~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAV--PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp BTTTCCEEEECTTSTTCCC--CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred ECCCCeEEEEcCCCCCCCC--CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence 54 5667777765 2 32 344444 667889999999998766554321 5899999998
Q ss_pred -CceeeEe-ecCCCeeEEEEecCCCEEEEEEcCC--------eEEEEECC-CC---eEEEEEeCCCCCEEEEEEcCCCCE
Q 003279 670 -GSCAGVF-KCQSGATQMRFQPRLGRILAAAIEN--------YISILDVE-TQ---VCRLKLQGHKNQVHSVCWNTSGEY 735 (834)
Q Consensus 670 -~~~i~~~-~~~~~i~~l~~sp~g~~ll~~s~dg--------~I~iwDl~-t~---~~~~~l~~h~~~I~sl~~spdg~~ 735 (834)
+...... .....+..++|+|||++|++++.++ .|++||+. ++ .......+|...+..++|+|||++
T Consensus 176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l 255 (662)
T 3azo_A 176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL 255 (662)
T ss_dssp GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence 6655444 4455677899999999999888653 79999999 57 444444556788999999999997
Q ss_pred EEEEe-CC--eEEEEEcCCCCCceeEEEeecCCCc--------eEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCeEEEe
Q 003279 736 LASVS-DE--LVRVWSIGSGSKGECIHELSCTGNK--------FHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTL 802 (834)
Q Consensus 736 Lasgs-Dg--~I~IwDl~s~~~~~~i~~~~~~~~~--------I~svafspdg~~L~sgs~dg~I~Iw--dl~~~~~~~l 802 (834)
++++. ++ .|++||+.++. .......+... +..++|++++..++++.. +.++|| |+.+++...+
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l 331 (662)
T 3azo_A 256 IVATDRTGWWNLHRVDPATGA---ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDA 331 (662)
T ss_dssp EEEECTTSSCEEEEECTTTCC---EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEEC
T ss_pred EEEECCCCCeEEEEEECCCCc---eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEe
Confidence 77776 67 66667765552 22212221111 457899999998888888 877777 7777887777
Q ss_pred ccCCCCeEEE-EEeCCCCEEEEEecCCcEEEe
Q 003279 803 SAHDKLVSSL-AASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 803 ~~h~~~V~~l-afspdg~~LaSgs~DG~I~IW 833 (834)
..|...+..+ +++.+.-++++++.+....||
T Consensus 332 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 332 AGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp CSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 7888888877 554433344555566555554
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-17 Score=197.64 Aligned_cols=295 Identities=14% Similarity=0.089 Sum_probs=198.4
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCC-----eEEEEEcCCCCEEEEEeCC-----
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK-----VESCHFSPDGKLLATGGHD----- 573 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~-----V~sl~fSpdg~~Lasgs~D----- 573 (834)
.+++++ |+.|.+|...... ....+.+|... ...++|||||++|++++.+
T Consensus 29 ~~~~~~--~~~i~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r 87 (740)
T 4a5s_A 29 EYLYKQ--ENNILVFNAEYGN-------------------SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWR 87 (740)
T ss_dssp EEEEEE--TTEEEEEETTTCC-------------------EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSS
T ss_pred cEEEEc--CCcEEEEECCCCc-------------------eEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEE
Confidence 567765 7888888654331 12334555432 3458899999999998876
Q ss_pred ----CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCe---------
Q 003279 574 ----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--------- 640 (834)
Q Consensus 574 ----g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V--------- 640 (834)
+.+.+||+.+++.. .+..|...+..++|+|||+.||.++ |+.|++||+.++.....+..++...+
T Consensus 88 ~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~ 165 (740)
T 4a5s_A 88 HSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY 165 (740)
T ss_dssp SCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred EccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccc
Confidence 56779999998865 4667888999999999999999884 68999999987664333333333323
Q ss_pred --------EEEEEccCCCcEEEEEeCCC-----------------------------------cEEEEECCC---Cc---
Q 003279 641 --------MSLDFHPSKEDLLCSCDNNS-----------------------------------EIRYWSINN---GS--- 671 (834)
Q Consensus 641 --------~sl~fspdg~~llasgs~Dg-----------------------------------~I~lwDl~s---~~--- 671 (834)
..+.|+|||+.+++...+++ .|++||+.+ ++
T Consensus 166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~ 245 (740)
T 4a5s_A 166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT 245 (740)
T ss_dssp HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC
T ss_pred cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce
Confidence 35899999997776543222 588899988 73
Q ss_pred eeeEee------cCCCeeEEEEecCCCEEEEEEcC----CeEEEEECCCCe----EEE--EE--eCCCCCEE-----EEE
Q 003279 672 CAGVFK------CQSGATQMRFQPRLGRILAAAIE----NYISILDVETQV----CRL--KL--QGHKNQVH-----SVC 728 (834)
Q Consensus 672 ~i~~~~------~~~~i~~l~~sp~g~~ll~~s~d----g~I~iwDl~t~~----~~~--~l--~~h~~~I~-----sl~ 728 (834)
...... +...+..++|+|+++.++..... ..|.+||+.+++ +.. .+ ..|...|. .+.
T Consensus 246 ~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~ 325 (740)
T 4a5s_A 246 SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPH 325 (740)
T ss_dssp EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCE
T ss_pred EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCce
Confidence 332221 23347889999999866665442 379999998876 221 11 44665554 789
Q ss_pred EcCCCCEEE-EEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-------CeEEEEECCC
Q 003279 729 WNTSGEYLA-SVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-------ETLELWNMTE 796 (834)
Q Consensus 729 ~spdg~~La-sgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d-------g~I~Iwdl~~ 796 (834)
|+|||+.|+ ..+ +| .|++||+.++. . ..+......+..+.. ++++.|+..+.. ..|+..++.+
T Consensus 326 fspDG~~l~~~~s~~~G~~~l~~~~~~~~~---~-~~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g 400 (740)
T 4a5s_A 326 FTLDGNSFYKIISNEEGYRHICYFQIDKKD---C-TFITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLID 400 (740)
T ss_dssp ECTTSSEEEEEEECTTSCEEEEEEETTCSS---C-EESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTE
T ss_pred EcCCCCEEEEEEEcCCCceEEEEEECCCCc---e-EecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCC
Confidence 999999877 565 44 79999988652 2 233334445555442 447777766654 2566667766
Q ss_pred CeEE-Eecc----CCCCeEEEEEeCCCCEEEEEec
Q 003279 797 NKTL-TLSA----HDKLVSSLAASTVNGMVASASH 826 (834)
Q Consensus 797 ~~~~-~l~~----h~~~V~~lafspdg~~LaSgs~ 826 (834)
+... .+.. ....+..+.|+|++++++....
T Consensus 401 ~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s 435 (740)
T 4a5s_A 401 YTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCS 435 (740)
T ss_dssp EEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEEC
T ss_pred CCcceeeccccCCCCCceEEEEECCCCCEEEEEeC
Confidence 5543 3322 2467889999999997765543
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-16 Score=176.88 Aligned_cols=262 Identities=11% Similarity=0.115 Sum_probs=193.5
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEeccC------CCCeEEEEECCCCCEEE
Q 003279 547 LIPASTSKVESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEH------TQWITDVRFSPSLSRLA 610 (834)
Q Consensus 547 ~l~gH~~~V~sl~fSpdg~~Lasgs~----------Dg~I~IWd~~t~~~~~~l~~h------~~~I~~l~fspdg~~La 610 (834)
.+..+..+ .++|+|||++|++++. ++.|.+||..+++.+..+... ......++|+||+++|+
T Consensus 46 ~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~ 123 (361)
T 2oiz_A 46 MVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIV 123 (361)
T ss_dssp EEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEE
T ss_pred EecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEE
Confidence 44445444 8999999999998863 678999999999988877532 34567899999999999
Q ss_pred EEeC--CCeEEEEecCCCCceeee-eccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-CceeeE------eecCC
Q 003279 611 TSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGV------FKCQS 680 (834)
Q Consensus 611 tgs~--Dg~I~IWDl~s~~~~i~~-~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s-~~~i~~------~~~~~ 680 (834)
++.. +++|.+||+.+.+. +.. +. +. ....+.+.|++...+++.+.||.+.+|++.. ++.... +....
T Consensus 124 v~n~~~~~~v~v~d~~~~~~-~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~ 200 (361)
T 2oiz_A 124 LQNASPATSIGIVDVAKGDY-VEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKD 200 (361)
T ss_dssp EEEESSSEEEEEEETTTTEE-EEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTT
T ss_pred EECCCCCCeEEEEECCCCcE-EEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCC
Confidence 8874 58999999998653 444 33 22 2234667888767777888899999999865 554422 12222
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEEeC------CC----CCEEEEEEcCCCCEEEEEe--------
Q 003279 681 GATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQG------HK----NQVHSVCWNTSGEYLASVS-------- 740 (834)
Q Consensus 681 ~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~--~~~~l~~------h~----~~I~sl~~spdg~~Lasgs-------- 740 (834)
....+.+.+++..++..+.++.|+++|+.... ....+.. +. .....++|+|++..++++.
T Consensus 201 ~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~ 280 (361)
T 2oiz_A 201 DPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT 280 (361)
T ss_dssp SCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC
T ss_pred CceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc
Confidence 22334456777888888889999999997543 2222211 11 1111378999988777653
Q ss_pred ----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC--eEEEe-ccCCCCeEEEE
Q 003279 741 ----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN--KTLTL-SAHDKLVSSLA 813 (834)
Q Consensus 741 ----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~--~~~~l-~~h~~~V~~la 813 (834)
.+.|.+||+.+. +.+..+..+. +..++|+|+|++|++++. +.|.+||..++ +++.. ..+......++
T Consensus 281 ~~~~~~~v~viD~~t~---~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~ 354 (361)
T 2oiz_A 281 HKFPAAEIWVMDTKTK---QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQ 354 (361)
T ss_dssp TTCCCSEEEEEETTTT---EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEE
T ss_pred ccCCCceEEEEECCCC---cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEE
Confidence 237999999988 7788887766 999999999999988876 99999999999 88855 57888899999
Q ss_pred EeCCCC
Q 003279 814 ASTVNG 819 (834)
Q Consensus 814 fspdg~ 819 (834)
++|+|+
T Consensus 355 ~~p~G~ 360 (361)
T 2oiz_A 355 FHPVGG 360 (361)
T ss_dssp ECCCSC
T ss_pred ecCCCC
Confidence 999985
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-16 Score=176.13 Aligned_cols=263 Identities=8% Similarity=0.051 Sum_probs=189.2
Q ss_pred CCCEEEEEe------CCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC----------CCeEEEEecCCC
Q 003279 563 DGKLLATGG------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENP 626 (834)
Q Consensus 563 dg~~Lasgs------~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~----------Dg~I~IWDl~s~ 626 (834)
+++++++.. .|+.|++||..+++.+..+..+..+ .++|+||+++|++++. ++.|.+||+.+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 556666553 3679999999999999888776655 8999999999998863 678999999876
Q ss_pred Cceeeeecc------CCCCeEEEEEccCCCcEEEEEeC-CCcEEEEECCCCceeeE-eecCCCeeEEEEecCC-CEEEEE
Q 003279 627 DYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FKCQSGATQMRFQPRL-GRILAA 697 (834)
Q Consensus 627 ~~~i~~~~~------h~~~V~sl~fspdg~~llasgs~-Dg~I~lwDl~s~~~i~~-~~~~~~i~~l~~sp~g-~~ll~~ 697 (834)
+. +..+.. +......++|+|++++++++... ++.|.+||+.+++.+.. +... ....+.+.|++ ..+++.
T Consensus 92 ~~-~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 92 TF-EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-GCWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp CE-EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-TEEEEEECTTSSSEEEEE
T ss_pred cE-EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-CcceeEEcCCCCeeEEEE
Confidence 54 444332 23457789999999877766544 68999999999988877 6553 33345677765 677888
Q ss_pred EcCCeEEEEECCC-CeEEEEE------eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC----
Q 003279 698 AIENYISILDVET-QVCRLKL------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---- 765 (834)
Q Consensus 698 s~dg~I~iwDl~t-~~~~~~l------~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~---- 765 (834)
+.||.+.+|++.. ++..... ..+..++ .+.+++++..++..+ ++.|+++|+..... ..+..+....
T Consensus 170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~-~~~~~~~~~~~~~~ 247 (361)
T 2oiz_A 170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEV-KVDGPWSLLNDEDK 247 (361)
T ss_dssp ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSC-EEEEEEESCCHHHH
T ss_pred CCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCc-eecccccccCcccc
Confidence 8899999999865 5544221 1122222 334466777777666 88999999976532 2222221100
Q ss_pred ------CceEEEEEeCCCCEEEEEEc-----------CCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecC
Q 003279 766 ------NKFHSCVFHPTFPSLLVIGC-----------YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 766 ------~~I~svafspdg~~L~sgs~-----------dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~D 827 (834)
.....++|+|++..++++.. .+.|.+||+.+++.+ .+..+. +.+++|+|||++|++++.
T Consensus 248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~- 324 (361)
T 2oiz_A 248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG- 324 (361)
T ss_dssp HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-
T ss_pred ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-
Confidence 11123689999998888754 348999999999988 444554 999999999999998887
Q ss_pred CcEEEeC
Q 003279 828 KCVKIWK 834 (834)
Q Consensus 828 G~I~IWd 834 (834)
+.|.|||
T Consensus 325 ~~v~v~D 331 (361)
T 2oiz_A 325 GNVNVYD 331 (361)
T ss_dssp SCEEEEE
T ss_pred CeEEEEE
Confidence 9999996
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.8e-16 Score=168.65 Aligned_cols=268 Identities=8% Similarity=0.032 Sum_probs=192.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeee
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~ 632 (834)
..|.+++|++++..++..+.++.+++| .++....+..+...+.+++|++++++++++..++.|.+||..++.. ...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~-~~~ 81 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-KRP 81 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE-EEE
Confidence 347888999998888877888999999 4556667777778889999999999888888899999999987653 233
Q ss_pred eccCCCCeEEEEEccCCCcEEEEEeCC----CcEEEEECCCCceeeEee---cCCCeeEEEEecCCCEEEEEEc------
Q 003279 633 FTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAI------ 699 (834)
Q Consensus 633 ~~~h~~~V~sl~fspdg~~llasgs~D----g~I~lwDl~s~~~i~~~~---~~~~i~~l~~sp~g~~ll~~s~------ 699 (834)
...+...+.+++|++++. +++++..+ +.|.+||..++.....+. ....+..++++|++..+++...
T Consensus 82 ~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp EECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred eeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 335667899999999976 55555555 689999998877653332 2346889999999876665543
Q ss_pred CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCC-CCCceeE-----EEeecCCCceEEE
Q 003279 700 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS-GSKGECI-----HELSCTGNKFHSC 771 (834)
Q Consensus 700 dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s-~~~~~~i-----~~~~~~~~~I~sv 771 (834)
.+.|..||..+++..... .+...+.+++|+|++++|+++. ++.|++||+.+ +.....+ ..+.. ...+..+
T Consensus 161 ~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i 238 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSC 238 (333)
T ss_dssp CEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEE
T ss_pred CceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCCCce
Confidence 356777887765443322 2334578999999998665554 78999999964 2211111 11111 2467889
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCC------CeEEEEEeCCCCEEEEEecC
Q 003279 772 VFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDK------LVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 772 afspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~------~V~~lafspdg~~LaSgs~D 827 (834)
+++++|..+++...++.|.+||........+..+.. .+.+++|++|++.|+.++.+
T Consensus 239 ~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 239 CIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 999999877776677899999985443334433332 68999999998777666555
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.7e-16 Score=168.42 Aligned_cols=239 Identities=15% Similarity=0.114 Sum_probs=181.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCC------------------------CcEEEEeCCCCeEEEEec-cCCCCeEEEEECCCCC
Q 003279 553 SKVESCHFSPDGKLLATGGHD------------------------KKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLS 607 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~D------------------------g~I~IWd~~t~~~~~~l~-~h~~~I~~l~fspdg~ 607 (834)
+.|.+|+++++|+++++...+ +.|.+||..+++.+..+. ++......++++++++
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~ 103 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN 103 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence 569999999999999888777 479999999898887664 4556789999999999
Q ss_pred EEEEEeCCCeEEEEecCCCCceeeee---------ccCCCCeEEEEEccCCCcEEEEEe-CCCcEEEEECCCCceeeEee
Q 003279 608 RLATSSADRTVRVWDTENPDYSLRTF---------TGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFK 677 (834)
Q Consensus 608 ~Latgs~Dg~I~IWDl~s~~~~i~~~---------~~h~~~V~sl~fspdg~~llasgs-~Dg~I~lwDl~s~~~i~~~~ 677 (834)
++++...++.|++||.......+..+ ..+......|+++|++..++++.+ .++.|++|| .++..+..+.
T Consensus 104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~ 182 (329)
T 3fvz_A 104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWG 182 (329)
T ss_dssp EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEEC
T ss_pred EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEec
Confidence 88888889999999987542234444 234457899999994455776775 689999999 5577776664
Q ss_pred cC-----------CCeeEEEEecCCCEEEEE-EcCCeEEEEECCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEE----
Q 003279 678 CQ-----------SGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASV---- 739 (834)
Q Consensus 678 ~~-----------~~i~~l~~sp~g~~ll~~-s~dg~I~iwDl~t~~~~~~l~--~h~~~I~sl~~spdg~~Lasg---- 739 (834)
.. .....++++|+++.++++ ..++.|++||..+++.+..+. .+...+.+++|+| +..+++.
T Consensus 183 ~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~ 261 (329)
T 3fvz_A 183 EESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPY 261 (329)
T ss_dssp EECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCC
T ss_pred cCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEE
Confidence 31 227899999995555555 457899999999888888874 3566889999999 4333332
Q ss_pred ---e-CCeEEEEEcCCCCCceeEEEe---ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 740 ---S-DELVRVWSIGSGSKGECIHEL---SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 740 ---s-Dg~I~IwDl~s~~~~~~i~~~---~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
. +..|++||+.++ ..+..+ ..+...+..++++|+|..+++...++.|++|++..
T Consensus 262 v~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 262 FGDQEPVQGFVMNFSSG---EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp TTCSCCCCEEEEETTTC---CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred eccCCCcEEEEEEcCCC---eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 2 348999999888 555555 35566789999999996666666678999999754
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.8e-16 Score=169.32 Aligned_cols=252 Identities=11% Similarity=0.101 Sum_probs=178.4
Q ss_pred CeEEEEEcCCCCEEEEEe---------CCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC---C--eEE
Q 003279 554 KVESCHFSPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---R--TVR 619 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs---------~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g--~I~ 619 (834)
.|..+.| ||++||... .++.|++||+.+++... + ..+.+++|+|||++|+.++.+ + .|+
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 3667777 898887653 25689999999877543 3 568899999999999988754 3 477
Q ss_pred EEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeC--------------------------CCcEEEEECCCCcee
Q 003279 620 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--------------------------NSEIRYWSINNGSCA 673 (834)
Q Consensus 620 IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~--------------------------Dg~I~lwDl~s~~~i 673 (834)
+||+.++.. ..+..+.. +.+++|+|+++.+++++.. ...|++||+.+++.+
T Consensus 89 ~~~~~~g~~--~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 89 VADLETLSS--KKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEETTTTEE--EEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEECCCCce--EEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 888876542 33333334 9999999999877766532 257999999988874
Q ss_pred eEeecCCCeeEEEEecCCCEEEEEEcCC---------eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C--
Q 003279 674 GVFKCQSGATQMRFQPRLGRILAAAIEN---------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-- 741 (834)
Q Consensus 674 ~~~~~~~~i~~l~~sp~g~~ll~~s~dg---------~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-D-- 741 (834)
..+... .+..+.|+|++ .++++..++ .|.++| +++.. .+..+ ..+.++ +|+|++|+.++ +
T Consensus 166 ~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~~-~~~~~~--spdg~~l~~~~~~~~ 237 (347)
T 2gop_A 166 EEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEE-KMFEK-VSFYAV--DSDGERILLYGKPEK 237 (347)
T ss_dssp EEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEE-EEEEE-ESEEEE--EECSSCEEEEECCSS
T ss_pred eeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceE-EeccC-cceeeE--CCCCCEEEEEEcccc
Confidence 444434 88899999999 666665432 455556 55543 33334 455544 99999887766 3
Q ss_pred ------CeEEEEEcCCCCCceeEEEeecCCCceEE-EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEE
Q 003279 742 ------ELVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAA 814 (834)
Q Consensus 742 ------g~I~IwDl~s~~~~~~i~~~~~~~~~I~s-vafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~laf 814 (834)
..|++|| ++ ........+...+.. +.|+ ++ .+++++.++.++|| +.+++...+..+...|.+++|
T Consensus 238 ~~~~~~~~l~~~d--~~---~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~ 309 (347)
T 2gop_A 238 KYMSEHNKLYIYD--GK---EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDV 309 (347)
T ss_dssp SCCCSSCEEEEEC--SS---CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEE
T ss_pred CCccccceEEEEC--CC---ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeee
Confidence 2677777 33 233333344567776 8999 88 88888889999999 877776666677888999999
Q ss_pred eCCCCEEEEEecCCcE-EEe
Q 003279 815 STVNGMVASASHDKCV-KIW 833 (834)
Q Consensus 815 spdg~~LaSgs~DG~I-~IW 833 (834)
+| .++++++.++.. .||
T Consensus 310 s~--~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 310 DE--IVVYLKETATRLRELF 327 (347)
T ss_dssp SS--SEEEEEECSSSCCEEE
T ss_pred eC--cEEEEEcCCCChHHhe
Confidence 99 677777777654 555
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-14 Score=169.35 Aligned_cols=308 Identities=11% Similarity=0.025 Sum_probs=220.5
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC-
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE- 582 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~- 582 (834)
.++++...++.|.+++.... . .+..+... ..+.++.|+|||++|++++.|+.|.+||+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~----------------~---v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~ 227 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTY----------------E---IKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM 227 (567)
T ss_dssp EEEEEETTTTEEEEEETTTC----------------C---EEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred eEEEEeCCCCeEEEEECCCC----------------e---EEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCC
Confidence 45566667777877754322 1 12233322 246789999999999999999999999996
Q ss_pred -CCeEEEEeccCCCCeEEEEEC----CCCCEEEEEeC-CCeEEEEecCCCCceeeeecc----------C-CCCeEEEEE
Q 003279 583 -SFTVKSTLEEHTQWITDVRFS----PSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------H-STTVMSLDF 645 (834)
Q Consensus 583 -t~~~~~~l~~h~~~I~~l~fs----pdg~~Latgs~-Dg~I~IWDl~s~~~~i~~~~~----------h-~~~V~sl~f 645 (834)
+++.+..+.... ....++|+ |||+++++++. ++.|.|+|..+.+. +..+.. | ...+..+.+
T Consensus 228 ~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~-~~~i~~~~~~~~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 228 KEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILA 305 (567)
T ss_dssp SSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred CCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE-EEEEeccccccccccccCCCceEEEEE
Confidence 888888886544 46799999 69998887765 58999999887654 333321 1 126788999
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCCCcee--eEeecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeC---
Q 003279 646 HPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG--- 719 (834)
Q Consensus 646 spdg~~llasgs~Dg~I~lwDl~s~~~i--~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~--- 719 (834)
++++..+++....+|.|.++|..+.+.. ..+........+.|+|+++++++++. ++.|.++|+.+++.+..+..
T Consensus 306 s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~ 385 (567)
T 1qks_A 306 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ 385 (567)
T ss_dssp CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred cCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc
Confidence 9988888888888899999999876433 33344556788999999999988875 68999999999987776653
Q ss_pred --CCCCEEEEEEcCCCC-EEEEEe--CCeEEEEEcCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEEEEEc-----
Q 003279 720 --HKNQVHSVCWNTSGE-YLASVS--DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIGC----- 785 (834)
Q Consensus 720 --h~~~I~sl~~spdg~-~Lasgs--Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I~svafspdg~~L~sgs~----- 785 (834)
|.+.-..+ ++|++. +++++. ++.|.++|..+... .+.+..+......-..+.++|+++++++...
T Consensus 386 ~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~ 464 (567)
T 1qks_A 386 TPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA 464 (567)
T ss_dssp SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH
T ss_pred CCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCc
Confidence 33222222 578744 445554 68999999987321 3566777655444455778999999998773
Q ss_pred --CCeEEEEECCCC---------eEEEe------ccCCCCeEEEEEeCCCCEEEEEec-----CCcEEEeC
Q 003279 786 --YETLELWNMTEN---------KTLTL------SAHDKLVSSLAASTVNGMVASASH-----DKCVKIWK 834 (834)
Q Consensus 786 --dg~I~Iwdl~~~---------~~~~l------~~h~~~V~~lafspdg~~LaSgs~-----DG~I~IWd 834 (834)
.+.|.+||+.+. +.+.+ ......+..+.|+++|+.+..+.. ++.|.|+|
T Consensus 465 ~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 465 EISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp HHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred ccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 359999999876 22211 112457899999999997776643 68888875
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=4.2e-15 Score=157.71 Aligned_cols=237 Identities=10% Similarity=0.154 Sum_probs=176.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec------cCCCCeEEEEE-CCCCCEEEEEeC-CCeEEEE
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------EHTQWITDVRF-SPSLSRLATSSA-DRTVRVW 621 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~------~h~~~I~~l~f-spdg~~Latgs~-Dg~I~IW 621 (834)
+|-..+.+++++++|+++++...++.|.+||.. ++.+..+. ++...+.++++ .+++.++++... ++.|++|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455678999999999988888889999999977 56666653 24457899999 567766666543 8899999
Q ss_pred ecCCCCceeeeec-cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec---CCCeeEEEEecCCCEEEEE
Q 003279 622 DTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 622 Dl~s~~~~i~~~~-~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~---~~~i~~l~~sp~g~~ll~~ 697 (834)
|.. +.. +..+. .+...+.++++++++. ++++...++.|.+||.. ++.+..+.. ...+..+++++++..+++.
T Consensus 106 d~~-g~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 106 NQY-GQF-VRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp CTT-SCE-EEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred CCC-CcE-EEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 943 443 34442 3446789999999976 66677778899999965 566665542 2458899999998766666
Q ss_pred EcCCeEEEEECCCCeEEEEEeCC--CCCEEEEEEcCCCCEEEEEe-CC-eEEEEEcCCCCCceeEEEeecCC--CceEEE
Q 003279 698 AIENYISILDVETQVCRLKLQGH--KNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCTG--NKFHSC 771 (834)
Q Consensus 698 s~dg~I~iwDl~t~~~~~~l~~h--~~~I~sl~~spdg~~Lasgs-Dg-~I~IwDl~s~~~~~~i~~~~~~~--~~I~sv 771 (834)
..++.|++||.. +..+..+..+ ...+.+++++++|.++++.. ++ .|.+||.. + ..+..+..+. ..+..+
T Consensus 182 ~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g---~~~~~~~~~~~~~~~~~i 256 (286)
T 1q7f_A 182 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G---QLISALESKVKHAQCFDV 256 (286)
T ss_dssp GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S---CEEEEEEESSCCSCEEEE
T ss_pred CCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-C---CEEEEEcccCCCCcceeE
Confidence 668999999985 4555566433 36789999999999888887 65 99999954 3 3444554433 347899
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCC
Q 003279 772 VFHPTFPSLLVIGCYETLELWNMTEN 797 (834)
Q Consensus 772 afspdg~~L~sgs~dg~I~Iwdl~~~ 797 (834)
+++|+|..+++ +.++.|++|++...
T Consensus 257 ~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 257 ALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EECCCCcEEEE-CCCCeEEEEEcccc
Confidence 99999975554 77899999998654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.1e-16 Score=171.70 Aligned_cols=245 Identities=12% Similarity=0.102 Sum_probs=169.9
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEE--ECCCCCEEEEE-----------
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR--FSPSLSRLATS----------- 612 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~--fspdg~~Latg----------- 612 (834)
....+|...+.++.|+|||+.|++++.++.|++||+.+++....+..+...+.... +++++++++..
T Consensus 74 ~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~ 153 (388)
T 3pe7_A 74 QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLT 153 (388)
T ss_dssp ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccccccc
Confidence 34456666666788999999999999999999999999988877776766665444 48999988743
Q ss_pred -----------eCCCeEEEEecCCCCceeeeeccCCCCeEEEEEcc-CCCcEEEEEeC-----CCcEEEEECCCCceeeE
Q 003279 613 -----------SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDN-----NSEIRYWSINNGSCAGV 675 (834)
Q Consensus 613 -----------s~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fsp-dg~~llasgs~-----Dg~I~lwDl~s~~~i~~ 675 (834)
..+..|++||+.++. ...+..+...+..++|+| ++..++++... ...|.++|+..+.....
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l 231 (388)
T 3pe7_A 154 DWKKFHEFYFTKPCCRLMRVDLKTGE--STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKV 231 (388)
T ss_dssp SHHHHHHHGGGCCCEEEEEEETTTCC--EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEES
T ss_pred ccchhhhhhccCCcceEEEEECCCCc--eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEe
Confidence 244789999999865 445556677899999999 88766655542 34788899876655444
Q ss_pred eecCC--CeeEEEEecCCCEEEEEEcC-C----eEEEEECCCCeEE--EEEeCCCCC---EEEEEEcCCCCEEEEE----
Q 003279 676 FKCQS--GATQMRFQPRLGRILAAAIE-N----YISILDVETQVCR--LKLQGHKNQ---VHSVCWNTSGEYLASV---- 739 (834)
Q Consensus 676 ~~~~~--~i~~l~~sp~g~~ll~~s~d-g----~I~iwDl~t~~~~--~~l~~h~~~---I~sl~~spdg~~Lasg---- 739 (834)
..... .+..+.|+|+++.|++.+.+ + .|++||+.+++.. ..+.++... ...++|+|||+.|+..
T Consensus 232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 311 (388)
T 3pe7_A 232 KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDD 311 (388)
T ss_dssp CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------
T ss_pred eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeec
Confidence 33332 36778999999988665542 2 3999999988643 333321000 1123799999987753
Q ss_pred -----e-CCeEEEEEcCCCCCceeEEEeecCCC-----------ceEEEEEeCCCCEEEEEEc-CC--eEEEEECCC
Q 003279 740 -----S-DELVRVWSIGSGSKGECIHELSCTGN-----------KFHSCVFHPTFPSLLVIGC-YE--TLELWNMTE 796 (834)
Q Consensus 740 -----s-Dg~I~IwDl~s~~~~~~i~~~~~~~~-----------~I~svafspdg~~L~sgs~-dg--~I~Iwdl~~ 796 (834)
. +..|++||+.++ . +..+..+.. .+..++|+|||+.|++++. ++ .|+++++..
T Consensus 312 ~~~~~~~~~~i~~~d~~~~---~-~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 312 SGYKIENDPFLYVFNMKNG---T-QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp -----CCCCEEEEEETTTT---E-EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred cccccCCCCEEEEEeccCC---c-eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence 2 558999999886 2 233444444 4778899999998887775 44 455555543
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.1e-15 Score=156.46 Aligned_cols=234 Identities=12% Similarity=0.125 Sum_probs=173.2
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeec------cCCCCeEEEEEccCCCcEEEEEeC-CCcEEE
Q 003279 592 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHPSKEDLLCSCDN-NSEIRY 664 (834)
Q Consensus 592 ~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~------~h~~~V~sl~fspdg~~llasgs~-Dg~I~l 664 (834)
++-..+.++++++++.++++.+.++.|.+||... .. +..+. ++...+.++++.+.+..++++... ++.|.+
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~-~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RF-KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CE-EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cE-EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 4556789999999999888888899999999873 32 33332 244678999995333446655533 789999
Q ss_pred EECCCCceeeEeec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEEe
Q 003279 665 WSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 665 wDl~s~~~i~~~~~--~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~--~h~~~I~sl~~spdg~~Lasgs 740 (834)
|| .+++.+..+.. ...+..+++++++..+++...++.|.+||.. ++.+..+. .+...+.+++++++|+++++..
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 182 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN 182 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence 99 56777666643 2468899999998866666678899999965 55555554 3456789999999999877776
Q ss_pred -CCeEEEEEcCCCCCceeEEEeecC--CCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEEEeccCC--CCeEEEEE
Q 003279 741 -DELVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTLTLSAHD--KLVSSLAA 814 (834)
Q Consensus 741 -Dg~I~IwDl~s~~~~~~i~~~~~~--~~~I~svafspdg~~L~sgs~dg-~I~Iwdl~~~~~~~l~~h~--~~V~~laf 814 (834)
++.|++||... ..+..+... ...+..++++++|..+++...++ .|.+||........+..+. ..+.++++
T Consensus 183 ~~~~i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~ 258 (286)
T 1q7f_A 183 RAHCVKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVAL 258 (286)
T ss_dssp GGTEEEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEE
T ss_pred CCCEEEEEcCCC----CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEE
Confidence 88999999743 344455433 35788999999998777776675 9999997554444444433 34789999
Q ss_pred eCCCCEEEEEecCCcEEEeC
Q 003279 815 STVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 815 spdg~~LaSgs~DG~I~IWd 834 (834)
+|+|+++++ +.|+.|+||+
T Consensus 259 ~~~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 259 MDDGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp ETTTEEEEE-ETTTEEEEEE
T ss_pred CCCCcEEEE-CCCCeEEEEE
Confidence 999987777 6799999995
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-13 Score=146.68 Aligned_cols=275 Identities=8% Similarity=-0.034 Sum_probs=196.3
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE-eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC
Q 003279 548 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 548 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~-l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~ 626 (834)
+..+...+.+++++++|+++++...++.|.+||.. ++.... +..+...+.++++++++.++++...++.|..||.. +
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 44566789999999999987776667899999988 554432 23355779999999999988887778899999986 3
Q ss_pred CceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee--cCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003279 627 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYIS 704 (834)
Q Consensus 627 ~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~--~~~~i~~l~~sp~g~~ll~~s~dg~I~ 704 (834)
......+......+.++++.+++. ++++...++.|.+||. +++...... ....+..+++.+++..+++...++.|.
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG 165 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred cEEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence 322222223456789999999875 6656666789999998 555443221 235688999999987666665678999
Q ss_pred EEECCCCeEEEE-EeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003279 705 ILDVETQVCRLK-LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 705 iwDl~t~~~~~~-l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~s 782 (834)
+||. +++.... +..+...+.+++++++|.++++.. ++.|.+||. ++.. ...........+..++++++|..+++
T Consensus 166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~--~~~~~~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI--TEFKIPTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE--EEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE--EEEECCCCCCCceeEEECCCCCEEEe
Confidence 9999 6654432 333456788999999999777765 789999998 5521 11223334567899999999985444
Q ss_pred EEcCCeEEEEECCCCeEEEe--ccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 783 IGCYETLELWNMTENKTLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 783 gs~dg~I~Iwdl~~~~~~~l--~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
...++.|.+||. +++...+ ..+...+.++++ +++.++++...++.+++
T Consensus 242 ~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 242 EWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKL 291 (299)
T ss_dssp ETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred ccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEE
Confidence 446789999998 4554433 345578999999 88887777655544443
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=6.2e-16 Score=184.35 Aligned_cols=241 Identities=10% Similarity=0.070 Sum_probs=165.8
Q ss_pred EEEEc--CCCCE-EEEEeC-CCcEEEEeCC--CCeEEEEecc-----CCCCeEEEEECCCCCEEEEEeCC----------
Q 003279 557 SCHFS--PDGKL-LATGGH-DKKAVLWCTE--SFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSAD---------- 615 (834)
Q Consensus 557 sl~fS--pdg~~-Lasgs~-Dg~I~IWd~~--t~~~~~~l~~-----h~~~I~~l~fspdg~~Latgs~D---------- 615 (834)
.+.|+ |||++ |+.++. +..|++|++. .......+.. |...+.+++|+|||+.|++++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence 55565 99998 776654 5667777765 2033445555 67789999999999999999877
Q ss_pred CeEEEEecCCCC----ceeeeec-cCCCCeEEEEEccCCCcEEEEEeCC-------CcEEEEECC-CC---ceeeEeec-
Q 003279 616 RTVRVWDTENPD----YSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSIN-NG---SCAGVFKC- 678 (834)
Q Consensus 616 g~I~IWDl~s~~----~~i~~~~-~h~~~V~sl~fspdg~~llasgs~D-------g~I~lwDl~-s~---~~i~~~~~- 678 (834)
..|++||+.+.. .....+. .+...+..++|+|||+.+++++... ..|++||+. ++ +.......
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~ 240 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP 240 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred eEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence 589999998720 1234455 5667888999999998776555432 479999999 56 44444443
Q ss_pred CCCeeEEEEecCCCEEEEEEcCC--eEEEEECCCCeEEEEEeCCCCC--------EEEEEEcCCCCEEEEEeCCeEEEE-
Q 003279 679 QSGATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQGHKNQ--------VHSVCWNTSGEYLASVSDELVRVW- 747 (834)
Q Consensus 679 ~~~i~~l~~sp~g~~ll~~s~dg--~I~iwDl~t~~~~~~l~~h~~~--------I~sl~~spdg~~LasgsDg~I~Iw- 747 (834)
...+..+.|+|+++.++++..++ .|++||+.+++.......+... +.+++|++++.+++++.++.++||
T Consensus 241 ~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (662)
T 3azo_A 241 EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGI 320 (662)
T ss_dssp TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEE
T ss_pred CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEE
Confidence 46789999999999666666677 6777887777655433333222 567899999999888776777777
Q ss_pred -EcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE--EEEcCC--eEEEEECCCCeEEEe
Q 003279 748 -SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL--VIGCYE--TLELWNMTENKTLTL 802 (834)
Q Consensus 748 -Dl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~--sgs~dg--~I~Iwdl~~~~~~~l 802 (834)
|+.++ .+..+..+...+..+. ++++..++ +++.+. .|++||+.+++...+
T Consensus 321 ~d~~~~----~~~~l~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 321 LDPESG----ELVDAAGPWTEWAATL-TVSGTRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp EETTTT----EEEECCSSCCEEEEEE-EEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred EECCCC----cEEEecCCCCeEEEEE-ecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 55444 3556666666777661 44444433 333343 677778888876654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5e-15 Score=161.50 Aligned_cols=234 Identities=10% Similarity=0.070 Sum_probs=174.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCC------------------------CeEEEEecCCCCceeeee-ccCCCCeEEEEEccC
Q 003279 594 TQWITDVRFSPSLSRLATSSAD------------------------RTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPS 648 (834)
Q Consensus 594 ~~~I~~l~fspdg~~Latgs~D------------------------g~I~IWDl~s~~~~i~~~-~~h~~~V~sl~fspd 648 (834)
-+.|.+|+++++|+++++.+.+ ++|.+||..++.. +..+ .++-..+..++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI-LQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE-EEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE-EeccCCCccCCceEEEECCC
Confidence 4569999999999999888777 4799999987765 3333 245567899999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCc-eeeEeec----------CCCeeEEEEec-CCCEEEEEE-cCCeEEEEECCCCeEEE
Q 003279 649 KEDLLCSCDNNSEIRYWSINNGS-CAGVFKC----------QSGATQMRFQP-RLGRILAAA-IENYISILDVETQVCRL 715 (834)
Q Consensus 649 g~~llasgs~Dg~I~lwDl~s~~-~i~~~~~----------~~~i~~l~~sp-~g~~ll~~s-~dg~I~iwDl~t~~~~~ 715 (834)
+. ++++...++.|++||..... .+..+.. -.....++++| ++..+++.+ .++.|++|| .++..+.
T Consensus 102 g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~ 179 (329)
T 3fvz_A 102 GN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT 179 (329)
T ss_dssp SC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred CC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence 87 77777788999999986542 4444421 12478999999 666666654 589999999 5566666
Q ss_pred EEeCC----------CCCEEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCceeEEEee--cCCCceEEEEEeCCCCEEE
Q 003279 716 KLQGH----------KNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELS--CTGNKFHSCVFHPTFPSLL 781 (834)
Q Consensus 716 ~l~~h----------~~~I~sl~~spd-g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~--~~~~~I~svafspdg~~L~ 781 (834)
.+... -....+|+++|+ +.++++.. ++.|++||..++ +.+..+. .+...+..++|+| +..++
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G---~~~~~~~~~~~~~~~~~~~~~p-g~~~~ 255 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK---EFVREIKHASFGRNVFAISYIP-GFLFA 255 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---CEEEEECCTTTTTCEEEEEEET-TEEEE
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---cEEEEEeccccCCCcceeeecC-CEEEE
Confidence 66422 234889999998 56555555 889999999876 5555553 3456788999999 32222
Q ss_pred EE-------EcCCeEEEEECCCCeEEEe----ccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 782 VI-------GCYETLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 782 sg-------s~dg~I~Iwdl~~~~~~~l----~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+. ..+..|++||+.+++.+.. ..+...+.+|+++|+|.++++...++.|++|+
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 22 2234899999999988854 35677899999999998888888999999985
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.70 E-value=4.4e-14 Score=153.14 Aligned_cols=244 Identities=13% Similarity=0.117 Sum_probs=176.3
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC----CeEEE
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRV 620 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D----g~I~I 620 (834)
+..+..+...+.+++|+++|++++++..++.|.+||.++++.......+...+.+++|+++++++++...+ +.|.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~ 116 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA 116 (333)
T ss_dssp EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence 44556777788999999999988888889999999999887766554567789999999999988877666 68999
Q ss_pred EecCCCCceeeeec--cCCCCeEEEEEccCCCcEEEEEeC------CCcEEEEECCCCceeeEeecCCCeeEEEEecCCC
Q 003279 621 WDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 692 (834)
Q Consensus 621 WDl~s~~~~i~~~~--~h~~~V~sl~fspdg~~llasgs~------Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~ 692 (834)
||..+.... ..+. .+...+.+++++|++. ++++... .+.|..||..+++..........+..++|+|+++
T Consensus 117 ~d~~~~~~~-~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~ 194 (333)
T 2dg1_A 117 ATENGDNLQ-DIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK 194 (333)
T ss_dssp ECTTSCSCE-EEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSS
T ss_pred EeCCCCEEE-EEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCC
Confidence 999876542 1222 3456799999999986 4545442 3567777776655554444445678999999998
Q ss_pred EEEEEE-cCCeEEEEECCC-CeEEE--------EEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe
Q 003279 693 RILAAA-IENYISILDVET-QVCRL--------KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 761 (834)
Q Consensus 693 ~ll~~s-~dg~I~iwDl~t-~~~~~--------~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~ 761 (834)
.++++. .++.|.+||+.+ +.... .+.++ ..+.+++++++|.++++.. ++.|.+||.. + ..+..+
T Consensus 195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g---~~~~~~ 269 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G---YPIGQI 269 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-S---CEEEEE
T ss_pred EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-C---CEEEEE
Confidence 776665 478999999964 32111 11222 4678899999999888776 7899999984 3 344454
Q ss_pred ecCCC------ceEEEEEeCCCCEEEEEEcCC------eEEEEECC
Q 003279 762 SCTGN------KFHSCVFHPTFPSLLVIGCYE------TLELWNMT 795 (834)
Q Consensus 762 ~~~~~------~I~svafspdg~~L~sgs~dg------~I~Iwdl~ 795 (834)
..... .+.+++|++++..|++++.++ .|+.+++.
T Consensus 270 ~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 270 LIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp ECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred EcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 43332 588999999988888777663 45555543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.5e-15 Score=180.11 Aligned_cols=245 Identities=8% Similarity=-0.004 Sum_probs=176.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCe-------
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDK-----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT------- 617 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg-----~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~------- 617 (834)
+|+..+.+++|||||++||.+..++ .|++||+.+++.+.....+ ..+..++|+||++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 3445688999999999999876543 8999999999887643222 23678999999999999988766
Q ss_pred ---------EEEEecCCCCce-ee--eeccCCCCeEEEEEccCCCcEEEEEeC----CCcEEEEECCC------Cc-eee
Q 003279 618 ---------VRVWDTENPDYS-LR--TFTGHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINN------GS-CAG 674 (834)
Q Consensus 618 ---------I~IWDl~s~~~~-i~--~~~~h~~~V~sl~fspdg~~llasgs~----Dg~I~lwDl~s------~~-~i~ 674 (834)
|++|++.++... .. ....|...+..+.|+||++.++++... +..|++||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 999999876532 12 223355668899999999987766642 56899999986 42 234
Q ss_pred EeecCCCeeEEEEecCCCEEEEEEcCC----eEEEEECCCCe--EEEEEeCCCC--CEEEEEEcCCCCEEEEEe-CC--e
Q 003279 675 VFKCQSGATQMRFQPRLGRILAAAIEN----YISILDVETQV--CRLKLQGHKN--QVHSVCWNTSGEYLASVS-DE--L 743 (834)
Q Consensus 675 ~~~~~~~i~~l~~sp~g~~ll~~s~dg----~I~iwDl~t~~--~~~~l~~h~~--~I~sl~~spdg~~Lasgs-Dg--~ 743 (834)
.+..+.......|+++++.|++.+..+ .|.+||+.++. ....+..|.. .+.+++|++++.++++.. ++ .
T Consensus 281 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~ 360 (710)
T 2xdw_A 281 KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT 360 (710)
T ss_dssp EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred EeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEE
Confidence 444322222335889999888877643 69999998764 1233444443 688899997777777777 77 5
Q ss_pred EEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCe
Q 003279 744 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENK 798 (834)
Q Consensus 744 I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d----g~I~Iwdl~~~~ 798 (834)
|++||+.++ ..+..+..+...+..++++|++..|++...+ +.|++||+.+++
T Consensus 361 l~~~~~~~g---~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 361 LQLHDLATG---ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEETTTC---CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEECCCC---CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 677787666 4556666667778889999999877655333 489999998876
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-14 Score=154.88 Aligned_cols=243 Identities=9% Similarity=0.058 Sum_probs=179.6
Q ss_pred EEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC
Q 003279 546 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 624 (834)
..+..+.....+++|+|+|+ +++++..++.|.+||..++ ...+..+...+.+++|+++++++++...++.|.+||..
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 34445666788999999998 7888888999999999887 55666777889999999999988877777899999997
Q ss_pred CCCceeeeecc----CCCCeEEEEEccCCCcEEEE----Ee-------------CCCcEEEEECCCCceeeEeecCCCee
Q 003279 625 NPDYSLRTFTG----HSTTVMSLDFHPSKEDLLCS----CD-------------NNSEIRYWSINNGSCAGVFKCQSGAT 683 (834)
Q Consensus 625 s~~~~i~~~~~----h~~~V~sl~fspdg~~llas----gs-------------~Dg~I~lwDl~s~~~i~~~~~~~~i~ 683 (834)
++.... .... ....+.+++++|+|. ++++ ++ ..+.|..++.. ++............
T Consensus 99 ~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~ 175 (296)
T 3e5z_A 99 GGEWES-IADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPN 175 (296)
T ss_dssp TCCEEE-EECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEE
T ss_pred CCcEEE-EeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCc
Confidence 765322 1111 123567899999986 5555 22 13466667665 55444444445678
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECC-CCeE---EEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEE
Q 003279 684 QMRFQPRLGRILAAAIENYISILDVE-TQVC---RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIH 759 (834)
Q Consensus 684 ~l~~sp~g~~ll~~s~dg~I~iwDl~-t~~~---~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~ 759 (834)
.++|+|+++.+++...++.|.+||+. ++.. ...+..+...+.+++++++|+++++. ++.|.+||.. + +.+.
T Consensus 176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g---~~~~ 250 (296)
T 3e5z_A 176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-G---DELG 250 (296)
T ss_dssp EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-S---CEEE
T ss_pred cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-C---CEEE
Confidence 99999999998555667899999997 4544 33333355567789999999987777 8899999986 3 4666
Q ss_pred EeecCCCceEEEEE-eCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 760 ELSCTGNKFHSCVF-HPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 760 ~~~~~~~~I~svaf-spdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
.+..+.. +.+++| .|++..|++++.+ .|..++.++.++.
T Consensus 251 ~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 251 RVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp EEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred EEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence 6666666 889999 5899988888875 5767777776554
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-14 Score=156.39 Aligned_cols=251 Identities=10% Similarity=0.019 Sum_probs=188.5
Q ss_pred CCCcEEEEeCCCCeEEEEec------cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEE
Q 003279 572 HDKKAVLWCTESFTVKSTLE------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 645 (834)
Q Consensus 572 ~Dg~I~IWd~~t~~~~~~l~------~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~f 645 (834)
.++.|.+||.++++....+. .......++++. +++++++...++.|.+||..+.+. +..+. .......+++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~-~~~i~-~~~~p~~i~~ 91 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE-VGRIT-GFTSPRYIHF 91 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE-EEEEE-CCSSEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE-EEEcC-CCCCCcEEEE
Confidence 37899999999998875542 122346778874 445566666689999999998764 44453 3467899999
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCC------CeeEEEEecCCCEEEEEE--cCCeEEEEECCCCeEEEEE
Q 003279 646 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS------GATQMRFQPRLGRILAAA--IENYISILDVETQVCRLKL 717 (834)
Q Consensus 646 spdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~------~i~~l~~sp~g~~ll~~s--~dg~I~iwDl~t~~~~~~l 717 (834)
++++ .++++...++.|.+||+.+++....+.... ....+++ +++.++++. .++.|.+||+++++.+..+
T Consensus 92 ~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i 168 (328)
T 3dsm_A 92 LSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDEL 168 (328)
T ss_dssp EETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred eCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence 8887 566566578999999999999888887655 5667777 456777766 3789999999999888877
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEe-C----------CeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEc
Q 003279 718 QGHKNQVHSVCWNTSGEYLASVS-D----------ELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGC 785 (834)
Q Consensus 718 ~~h~~~I~sl~~spdg~~Lasgs-D----------g~I~IwDl~s~~~~~~i~~~~~~-~~~I~svafspdg~~L~sgs~ 785 (834)
... .....++++++|++++++. + +.|.+||..++ +....+... ......++|+|+++.|+++..
T Consensus 169 ~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 169 TIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp ECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT---EEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred EcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC---eEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence 643 3457899999999877766 4 68999999887 455444432 346889999999999888765
Q ss_pred CCeEEEEECCCCeEEE--ec-cCCCCeEEEEEeC-CCCEEEEE----ecCCcEEEeC
Q 003279 786 YETLELWNMTENKTLT--LS-AHDKLVSSLAAST-VNGMVASA----SHDKCVKIWK 834 (834)
Q Consensus 786 dg~I~Iwdl~~~~~~~--l~-~h~~~V~~lafsp-dg~~LaSg----s~DG~I~IWd 834 (834)
.|.+||..+++... +. .+.....+++++| ++.++++. ..++.|.+||
T Consensus 245 --~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 245 --DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp --SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred --EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 89999999887642 11 2246789999999 45566665 5688999986
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-14 Score=157.87 Aligned_cols=232 Identities=18% Similarity=0.198 Sum_probs=162.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCC---C--cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC------------
Q 003279 553 SKVESCHFSPDGKLLATGGHD---K--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------------ 615 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~D---g--~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D------------ 615 (834)
..+.+++|||||++||.++.+ + .|++||+.+++.......+ . +.+++|+||++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 458899999999999988754 2 4888899888776555433 3 9999999999999888642
Q ss_pred ---------------CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC---------cEEEEECCCCc
Q 003279 616 ---------------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS---------EIRYWSINNGS 671 (834)
Q Consensus 616 ---------------g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg---------~I~lwDl~s~~ 671 (834)
..|++||+.++.. +..+.. . .+..++|+|++ +++++..+. .|.++| +++
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~-~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~ 209 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEV-IEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DGK 209 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEE-EEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TTE
T ss_pred cceeecCcccccCccceEEEEECCCCeE-EeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeC--CCc
Confidence 5799999987653 233333 3 78899999998 666665432 355555 555
Q ss_pred eeeEeecCCCeeEEEEecCCCEEEEEEcC--------CeEEEEECCCCeEEEEEeCCCCCEEE-EEEcCCCCEEEEEe-C
Q 003279 672 CAGVFKCQSGATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLKLQGHKNQVHS-VCWNTSGEYLASVS-D 741 (834)
Q Consensus 672 ~i~~~~~~~~i~~l~~sp~g~~ll~~s~d--------g~I~iwDl~t~~~~~~l~~h~~~I~s-l~~spdg~~Lasgs-D 741 (834)
....... ..+.. ++|+|+.|++++.+ ..|.+|| +++.......+...+.. +.|+ ++ ++++++ +
T Consensus 210 ~~~l~~~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~ 282 (347)
T 2gop_A 210 EEKMFEK-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEE 282 (347)
T ss_dssp EEEEEEE-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEET
T ss_pred eEEeccC-cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecC
Confidence 5444443 33433 49999999888754 3688888 56555444556777886 9999 88 777777 8
Q ss_pred CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE-EEEECCCCeEEEeccCCCC
Q 003279 742 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL-ELWNMTENKTLTLSAHDKL 808 (834)
Q Consensus 742 g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I-~Iwdl~~~~~~~l~~h~~~ 808 (834)
+.++|| +.++ .. ..+..+...|.+++|+| ..+++++.++.. .||.+. ++...+..|...
T Consensus 283 ~~~~l~-~~~g---~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~~~~lt~~n~~ 342 (347)
T 2gop_A 283 GSVNLY-IWDG---EI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GEEKQLTDYNDP 342 (347)
T ss_dssp TEEEEE-EESS---SE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SSEEECCCTTST
T ss_pred CcEEEE-EcCC---ce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-CcEEEeccccHh
Confidence 899999 8743 33 33334477899999999 667777777643 666665 666566666543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-13 Score=159.80 Aligned_cols=265 Identities=11% Similarity=0.061 Sum_probs=195.3
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC--CCCceeeeeccCCCC
Q 003279 562 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE--NPDYSLRTFTGHSTT 639 (834)
Q Consensus 562 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~--s~~~~i~~~~~h~~~ 639 (834)
+.+.++++...++.|.+||..+++.+.++... ..+..+.|+||++++++++.|+.|.+||+. +.+. +..+.. ...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~-v~~i~~-G~~ 241 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-VAEIKI-GSE 241 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE-EEEEEC-CSE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE-eEEEec-CCC
Confidence 34456677778899999999999999888643 357799999999999999999999999995 5443 444443 334
Q ss_pred eEEEEEc----cCCCcEEEEEeCCCcEEEEECCCCceeeEeecC------------CCeeEEEEecCCCEEEEEEc-CCe
Q 003279 640 VMSLDFH----PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------SGATQMRFQPRLGRILAAAI-ENY 702 (834)
Q Consensus 640 V~sl~fs----pdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~------------~~i~~l~~sp~g~~ll~~s~-dg~ 702 (834)
...++|+ |+|++++++...++.|.++|..+.+.+..+... ..+..+.+++++..+++... +|.
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 6799999 699988888888899999999999988877642 15677888888776666554 589
Q ss_pred EEEEECCCCeE--EEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeec-----CCCceEEEEE
Q 003279 703 ISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC-----TGNKFHSCVF 773 (834)
Q Consensus 703 I~iwDl~t~~~--~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~-----~~~~I~svaf 773 (834)
|.++|..+... +..+. ......++.|+|++++++++. ++.|.++|+.++ +.+..+.. |.+.... .+
T Consensus 322 v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~---kl~~~i~vgg~~Phpg~g~~-~~ 396 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG---KLVAIEDTGGQTPHPGRGAN-FV 396 (567)
T ss_dssp EEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSSBCCTTCEE-EE
T ss_pred EEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCC---cEEEEEeccCcCCCCcccee-eE
Confidence 99999987532 23332 445678999999999988776 789999999987 44444433 2211112 26
Q ss_pred eCCCCEEEEEE--cCCeEEEEECCC-------CeEE-EeccCCCCeEEEEEeCCCCEEEEEec-------CCcEEEeC
Q 003279 774 HPTFPSLLVIG--CYETLELWNMTE-------NKTL-TLSAHDKLVSSLAASTVNGMVASASH-------DKCVKIWK 834 (834)
Q Consensus 774 spdg~~L~sgs--~dg~I~Iwdl~~-------~~~~-~l~~h~~~V~~lafspdg~~LaSgs~-------DG~I~IWd 834 (834)
+|++..+++.+ .++.|.++|..+ .+.+ .+......-..+.++|++++|.+... ...|.|+|
T Consensus 397 ~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 397 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred CCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 88866666554 457999999987 5555 33333333355788999998888663 34787775
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.4e-14 Score=150.18 Aligned_cols=240 Identities=9% Similarity=0.062 Sum_probs=173.5
Q ss_pred CeEEEEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 662 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 662 (834)
+..+..+..+.....+++|+|+++ +++++..++.|.+||..++ ...+..+...+.++++++++. ++++...++.|
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i 92 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRL 92 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCC-EEEEETTTTEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCc-EEEEecCCCeE
Confidence 334455556677789999999998 7788888999999999875 455666778899999999987 56566567899
Q ss_pred EEEECCCCceeeEeec-----CCCeeEEEEecCCCEEEEE----E-------------cCCeEEEEECCCCeEEEEEeCC
Q 003279 663 RYWSINNGSCAGVFKC-----QSGATQMRFQPRLGRILAA----A-------------IENYISILDVETQVCRLKLQGH 720 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~~-----~~~i~~l~~sp~g~~ll~~----s-------------~dg~I~iwDl~t~~~~~~l~~h 720 (834)
.+||..+++....... ...+..++++|+|+.+++. + ..+.|..||.. ++. ..+..+
T Consensus 93 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~ 170 (296)
T 3e5z_A 93 ERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRD 170 (296)
T ss_dssp EEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECC
T ss_pred EEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecC
Confidence 9999988876544322 2346679999999877763 2 13467777766 443 334456
Q ss_pred CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcC-CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 003279 721 KNQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 798 (834)
Q Consensus 721 ~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~-s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~ 798 (834)
......++|+|++++|++.. ++.|++||+. ++........+..+...+..++++++|..++ ++ ++.|.+||.....
T Consensus 171 ~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v-~~-~~~v~~~~~~g~~ 248 (296)
T 3e5z_A 171 RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWA-SA-GDGVHVLTPDGDE 248 (296)
T ss_dssp CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEE-EE-TTEEEEECTTSCE
T ss_pred CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEE-Ec-CCeEEEECCCCCE
Confidence 67789999999999985555 7899999997 3321011222233455567899999998544 44 7899999987444
Q ss_pred EEEeccCCCCeEEEEE-eCCCCEEEEEecCCcEEE
Q 003279 799 TLTLSAHDKLVSSLAA-STVNGMVASASHDKCVKI 832 (834)
Q Consensus 799 ~~~l~~h~~~V~~laf-spdg~~LaSgs~DG~I~I 832 (834)
...+..+.. +.+++| .++++.|++++.++.+++
T Consensus 249 ~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 249 LGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI 282 (296)
T ss_dssp EEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred EEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence 445666666 999999 589998998888875554
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-12 Score=139.03 Aligned_cols=275 Identities=8% Similarity=-0.025 Sum_probs=194.5
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC
Q 003279 548 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 548 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~ 626 (834)
+......+.+++++++|+++++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|.+||.. +
T Consensus 15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 34456679999999999988877778999999988 55543 233344679999999999888877778899999988 4
Q ss_pred CceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeE-ee-cCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003279 627 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQPRLGRILAAAIENYIS 704 (834)
Q Consensus 627 ~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~-~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~ 704 (834)
.............+.++++.+++. ++++...++.|..||.. ++.... +. ....+..+++.++++.+++...++.|.
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 170 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIG 170 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred CeEEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence 432222333446789999998876 55566557899999988 554422 22 235688999999988555555578999
Q ss_pred EEECCCCeEEE-EEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003279 705 ILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 705 iwDl~t~~~~~-~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~s 782 (834)
+||. +++... ....+...+.+++++++|.++++.. .+.|.+||. ++. ............+.+++++++|..+++
T Consensus 171 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~d~~g~l~v~ 246 (300)
T 2qc5_A 171 RITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE--ISEYDIPTPNARPHAITAGKNSEIWFT 246 (300)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc--EEEEECCCCCCCceEEEECCCCCEEEe
Confidence 9999 454333 2223456789999999998777766 678999998 332 112223334567889999999985444
Q ss_pred EEcCCeEEEEECCCCeEEEe--ccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 783 IGCYETLELWNMTENKTLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 783 gs~dg~I~Iwdl~~~~~~~l--~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
...++.|.+||. +++...+ ......+.+++++++|.++++.. . .|..+
T Consensus 247 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 247 EWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL 296 (300)
T ss_dssp ETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred ccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence 445689999998 4554433 33456789999999998766655 4 55544
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.65 E-value=5e-15 Score=178.31 Aligned_cols=246 Identities=10% Similarity=0.010 Sum_probs=171.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEE-----eCCCcEEEEeCCCCeEEEEeccCCCCe--EEEEECCCCCEEEEEeCCCe-----
Q 003279 550 ASTSKVESCHFSPDGKLLATG-----GHDKKAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSADRT----- 617 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasg-----s~Dg~I~IWd~~t~~~~~~l~~h~~~I--~~l~fspdg~~Latgs~Dg~----- 617 (834)
+|+..+.+++|||||++||.+ +.+..|++||+.+++.+. ..+...+ ..++|+||++.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 466678999999999999943 445689999999988641 1122222 68999999999999998876
Q ss_pred --------EEEEecCCCCc---eeeeeccCCCCeEEEEEccCCCcEEEEEeCC-C--cEEEEECCCCceeeEeecCCCee
Q 003279 618 --------VRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKCQSGAT 683 (834)
Q Consensus 618 --------I~IWDl~s~~~---~i~~~~~h~~~V~sl~fspdg~~llasgs~D-g--~I~lwDl~s~~~i~~~~~~~~i~ 683 (834)
|++|++.++.. .+.....|...+.++.|+|+|+.++++...+ + .|++||..++...........+.
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 275 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY 275 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE
Confidence 99999987653 2233334556889999999999887666544 2 67777776666555555555566
Q ss_pred EEEEecCCCEEEEEEc----CCeEEEEECCCCeE---EEEEeCC-CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcC-CCC
Q 003279 684 QMRFQPRLGRILAAAI----ENYISILDVETQVC---RLKLQGH-KNQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGS 753 (834)
Q Consensus 684 ~l~~sp~g~~ll~~s~----dg~I~iwDl~t~~~---~~~l~~h-~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~-s~~ 753 (834)
...+ +++. +++.+. ++.|.+||+.++.. ...+..+ ...+..++|+ ++.++++.. |+..+||.+. .+
T Consensus 276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g- 351 (695)
T 2bkl_A 276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKG- 351 (695)
T ss_dssp EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC-
T ss_pred EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC-
Confidence 6666 5666 555554 47899999987642 3333333 4567888998 666777766 8877777655 23
Q ss_pred CceeEEEeecC-CCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCeEEEec
Q 003279 754 KGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTLS 803 (834)
Q Consensus 754 ~~~~i~~~~~~-~~~I~svafspdg~~L~sgs~d----g~I~Iwdl~~~~~~~l~ 803 (834)
..+..+..+ ...+..++++|++..|++...+ +.|++||+.+++...+.
T Consensus 352 --~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 352 --KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA 404 (695)
T ss_dssp --CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred --CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 344455444 5567778899999877755433 58999999988765443
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.4e-15 Score=163.97 Aligned_cols=248 Identities=8% Similarity=0.029 Sum_probs=171.1
Q ss_pred EEEeCCCCeEEEEeccCCCC-----eEEEEECCCCCEEEEEeCC---CeEEEEecCCCCceeeeeccCCCC-eEEEEEcc
Q 003279 577 VLWCTESFTVKSTLEEHTQW-----ITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHP 647 (834)
Q Consensus 577 ~IWd~~t~~~~~~l~~h~~~-----I~~l~fspdg~~Latgs~D---g~I~IWDl~s~~~~i~~~~~h~~~-V~sl~fsp 647 (834)
..+|..++..+..+..+... +.+++|+|||++|+.+..+ ..|++||+.++. ...+..+... +..+.|+|
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~sp 90 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ--AVQLTEGKGDNTFGGFIST 90 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE--EEECCCSSCBCTTTCEECT
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCc--EEEeecCCCCccccceECC
Confidence 44577888888787665444 7889999999998877653 378888988754 2333333333 33478999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCe-eE-------------------EEEecCCCEEEEE-----EcCCe
Q 003279 648 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQ-------------------MRFQPRLGRILAA-----AIENY 702 (834)
Q Consensus 648 dg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i-~~-------------------l~~sp~g~~ll~~-----s~dg~ 702 (834)
+++.++ .++.++.|++||+.+++.......+... .. +.|+|+++.++++ ..+..
T Consensus 91 dg~~l~-~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~ 169 (396)
T 3c5m_A 91 DERAFF-YVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCR 169 (396)
T ss_dssp TSSEEE-EEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEE
T ss_pred CCCEEE-EEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcce
Confidence 988555 5556778999999988876666533331 11 2456666655544 34568
Q ss_pred EEEEECCCCeEEEEEeCCCCCEEEEEEcC-CCCEEEEEe-C------CeEEEEEcCCCCCceeEEEeecC--CCceEEEE
Q 003279 703 ISILDVETQVCRLKLQGHKNQVHSVCWNT-SGEYLASVS-D------ELVRVWSIGSGSKGECIHELSCT--GNKFHSCV 772 (834)
Q Consensus 703 I~iwDl~t~~~~~~l~~h~~~I~sl~~sp-dg~~Lasgs-D------g~I~IwDl~s~~~~~~i~~~~~~--~~~I~sva 772 (834)
|++||+.+++..... .+...+..+.|+| ++..|+..+ + ..|.+||+..+. ...+..+ ...+..++
T Consensus 170 l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----~~~l~~~~~~~~~~~~~ 244 (396)
T 3c5m_A 170 LIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN----VRKIKEHAEGESCTHEF 244 (396)
T ss_dssp EEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC----CEESSCCCTTEEEEEEE
T ss_pred EEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc----eeEeeccCCCccccceE
Confidence 999999988765544 4667899999999 788776655 2 368889987652 1222222 23577899
Q ss_pred EeCCCCEEEEEEcC-----CeEEEEECCCCeEEEeccCCCCeEEEEEeC-CCCEEEEEe----------------cCCcE
Q 003279 773 FHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDKLVSSLAAST-VNGMVASAS----------------HDKCV 830 (834)
Q Consensus 773 fspdg~~L~sgs~d-----g~I~Iwdl~~~~~~~l~~h~~~V~~lafsp-dg~~LaSgs----------------~DG~I 830 (834)
|+|+|++|++++.+ +.|++||+.+++...+..... .. +.|+| ||++|++++ .++.|
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i 322 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFL 322 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEE
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcE
Confidence 99999988877654 349999999887665443332 33 89999 999888765 24678
Q ss_pred EEeC
Q 003279 831 KIWK 834 (834)
Q Consensus 831 ~IWd 834 (834)
++||
T Consensus 323 ~~~d 326 (396)
T 3c5m_A 323 YVLN 326 (396)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8885
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-13 Score=151.24 Aligned_cols=253 Identities=8% Similarity=-0.020 Sum_probs=181.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeee
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 633 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~ 633 (834)
....+.+. +++++++...++.|.+||..+++.+.++. .......++++++++++++...++.|.+||+.+.+. ...+
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~-~~~i 121 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEI-TGYI 121 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEE-EEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeE-EEEE
Confidence 35677774 34455566667999999999999988885 346789999988885444444899999999998654 3333
Q ss_pred ccCC-----CCeEEEEEccCCCcEEEEEe-CCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcC-------
Q 003279 634 TGHS-----TTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE------- 700 (834)
Q Consensus 634 ~~h~-----~~V~sl~fspdg~~llasgs-~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d------- 700 (834)
.... .....+++ ++..++++.. .++.|.+||+.+++.+..+........+.++++++.++++..+
T Consensus 122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~ 199 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYG 199 (328)
T ss_dssp ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSC
T ss_pred EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccc
Confidence 3222 14566777 3455665554 4889999999999999888877778889999998766555544
Q ss_pred ---CeEEEEECCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC
Q 003279 701 ---NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 776 (834)
Q Consensus 701 ---g~I~iwDl~t~~~~~~l~~h-~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspd 776 (834)
+.|.+||..+++....+... ......++|+|++++|+++.. .|.+||..++.... ...+.........++++|+
T Consensus 200 ~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~ 277 (328)
T 3dsm_A 200 YEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPV-RPFLEFRDTKYYGLTVNPN 277 (328)
T ss_dssp BCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCS-SCSBCCCSSCEEEEEECTT
T ss_pred cCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceee-eeeecCCCCceEEEEEcCC
Confidence 78999999999887776532 346889999999998887655 89999998774311 1111222466889999996
Q ss_pred CCEEEEEE-----cCCeEEEEECCCCeEEEeccCCCCeEEEEE
Q 003279 777 FPSLLVIG-----CYETLELWNMTENKTLTLSAHDKLVSSLAA 814 (834)
Q Consensus 777 g~~L~sgs-----~dg~I~Iwdl~~~~~~~l~~h~~~V~~laf 814 (834)
+..|+++. .++.|.+||.. ++.+....-......++|
T Consensus 278 ~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~ 319 (328)
T 3dsm_A 278 NGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCW 319 (328)
T ss_dssp TCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEE
T ss_pred CCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEE
Confidence 65566665 56799999998 776633333444555555
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=9.2e-14 Score=154.13 Aligned_cols=271 Identities=10% Similarity=0.069 Sum_probs=194.4
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe----------CCCeEEEEe
Q 003279 558 CHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWD 622 (834)
Q Consensus 558 l~fSpdg~~Lasgs~-----Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs----------~Dg~I~IWD 622 (834)
....|+++.+++... ++.|.++|..+++.+.++.....+ . ++++||++++++++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 445789998888865 679999999999999998766665 4 99999999988776 367899999
Q ss_pred cCCCCceeeeec-cC------CCCeEEEEEccCCCcEEEEEeC-CCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEE
Q 003279 623 TENPDYSLRTFT-GH------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 694 (834)
Q Consensus 623 l~s~~~~i~~~~-~h------~~~V~sl~fspdg~~llasgs~-Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~l 694 (834)
..+.+. +..+. +. ......+.|+|||++++++... ++.|.++|+.+++.+..+..... ...+......+
T Consensus 116 ~~t~~v-~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~ 192 (386)
T 3sjl_D 116 PVTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTF 192 (386)
T ss_dssp TTTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEE
T ss_pred CCCCeE-EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCcee
Confidence 998764 44332 21 2246679999999987766543 78999999999999999876442 22333345677
Q ss_pred EEEEcCCeEEEEECCC-CeEEEEEeCC----CCCEE-EEEEc-CCCCEEEEEeCCeEEEEEcCCCCCceeEEEee---c-
Q 003279 695 LAAAIENYISILDVET-QVCRLKLQGH----KNQVH-SVCWN-TSGEYLASVSDELVRVWSIGSGSKGECIHELS---C- 763 (834)
Q Consensus 695 l~~s~dg~I~iwDl~t-~~~~~~l~~h----~~~I~-sl~~s-pdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~---~- 763 (834)
++.+.||.+.++++.+ ++.......+ ..++. ...|. ++|++++++.++.|+++|+.+... ..+..+. .
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~-~v~~~~~~~~~~ 271 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALTEA 271 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCEESSCHH
T ss_pred EEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcc-eeecceeccccc
Confidence 8889999999999986 5543322111 12222 24664 688777766689999999976532 2222221 0
Q ss_pred ------CCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCC-EEEEEe-
Q 003279 764 ------TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS- 825 (834)
Q Consensus 764 ------~~~~I~svafspdg~~L~sgs~----------dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~-~LaSgs- 825 (834)
....+..+++++++..+++... .+.|.++|+.+++++....-...+..|++++|++ +|+++.
T Consensus 272 ~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~ 351 (386)
T 3sjl_D 272 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST 351 (386)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET
T ss_pred cccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC
Confidence 1123335778999999988753 2479999999999985554455889999999997 666654
Q ss_pred cCCcEEEeC
Q 003279 826 HDKCVKIWK 834 (834)
Q Consensus 826 ~DG~I~IWd 834 (834)
.++.|.++|
T Consensus 352 ~~~~VsViD 360 (386)
T 3sjl_D 352 GDKTLYIHD 360 (386)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEEEE
Confidence 588999886
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-13 Score=144.93 Aligned_cols=238 Identities=8% Similarity=-0.042 Sum_probs=169.0
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeee
Q 003279 554 KVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 554 ~V~sl~fSpdg~~La-sgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~ 632 (834)
...+++++++|++++ +.+.++.|.+||..+.........+...+.++++++++.++++.. ++.|.+||...... ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~--~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ--TV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC--EE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE--ee
Confidence 578899999999777 446788999999766544332233445688999999998666655 88999999876442 22
Q ss_pred ec-cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003279 633 FT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET 710 (834)
Q Consensus 633 ~~-~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t 710 (834)
+. .....+.++++++++. ++++...++.|.+|+..+........ ....+..+++++++..+++...++.|.+||...
T Consensus 102 ~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp CCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred eecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 22 2336789999999876 66666678899999876554332221 224578899999988665555678999999987
Q ss_pred CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003279 711 QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 789 (834)
Q Consensus 711 ~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I 789 (834)
.........+...+.+++++++|.++++.. ++.|.+||..... .......+...+..++++++|..+++...++.|
T Consensus 181 ~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v 257 (270)
T 1rwi_B 181 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT---STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV 257 (270)
T ss_dssp CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC---CEECCCCSCSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc---ceeeccCCCCCceeEEECCCCCEEEEECCCCEE
Confidence 765544333446789999999997777766 7899999987642 221112233568999999999877777778899
Q ss_pred EEEECCCCe
Q 003279 790 ELWNMTENK 798 (834)
Q Consensus 790 ~Iwdl~~~~ 798 (834)
++|++...+
T Consensus 258 ~~~~~~~~~ 266 (270)
T 1rwi_B 258 VKLTSLEHH 266 (270)
T ss_dssp EEECCCGGG
T ss_pred EEEcCCCcc
Confidence 999987654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-12 Score=144.62 Aligned_cols=266 Identities=9% Similarity=0.008 Sum_probs=185.7
Q ss_pred EcCCCCEEEEEeC--CC---cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe----------CCCeEEEEecC
Q 003279 560 FSPDGKLLATGGH--DK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTE 624 (834)
Q Consensus 560 fSpdg~~Lasgs~--Dg---~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs----------~Dg~I~IWDl~ 624 (834)
..|++++++++.. .. .|.+||..+++.+..+.....+ .++|+||+++|+++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 4467777776653 22 8899999999999888765544 999999999999886 36789999998
Q ss_pred CCCceeeeeccC-------CCCeEEEEEccCCCcEEEEEeC-CCcEEEEECCCCceeeE-eecCCCeeEEEEecCC-CEE
Q 003279 625 NPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FKCQSGATQMRFQPRL-GRI 694 (834)
Q Consensus 625 s~~~~i~~~~~h-------~~~V~sl~fspdg~~llasgs~-Dg~I~lwDl~s~~~i~~-~~~~~~i~~l~~sp~g-~~l 694 (834)
+.+. +..+.-. ......+.|+|+|++++++... ++.|.++| .+++.+.. +..... +.+.|++ ..+
T Consensus 106 t~~~-~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~ 180 (373)
T 2mad_H 106 TFLP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTF 180 (373)
T ss_pred CCcE-EEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceE
Confidence 7554 3333211 1335589999999987766544 58899999 99998877 665432 4455655 455
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEe-----CCCCCE-EEEEEcCCCCEE-EEEeCCeEEEEEcCCCCCceeEEEeec----
Q 003279 695 LAAAIENYISILDVETQVCRLKLQ-----GHKNQV-HSVCWNTSGEYL-ASVSDELVRVWSIGSGSKGECIHELSC---- 763 (834)
Q Consensus 695 l~~s~dg~I~iwDl~t~~~~~~l~-----~h~~~I-~sl~~spdg~~L-asgsDg~I~IwDl~s~~~~~~i~~~~~---- 763 (834)
++.+.||.+.++|. +++.+.... ....++ ....+.+++..+ +...++.|.++|+..... ..+..+..
T Consensus 181 ~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~-~v~~~~~~~~~~ 258 (373)
T 2mad_H 181 YLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNKAPIDALSGG 258 (373)
T ss_pred EEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc-eEeeeeeecCCc
Confidence 66677899999999 776653322 111222 234566665544 444478999999976422 22222221
Q ss_pred ------CCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCC-EEEEEe-
Q 003279 764 ------TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS- 825 (834)
Q Consensus 764 ------~~~~I~svafspdg~~L~sgs~----------dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~-~LaSgs- 825 (834)
.......++++++++.++++.. .+.|.++|+.+++.+..........+++|+|||+ +++++.
T Consensus 259 ~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~ 338 (373)
T 2mad_H 259 RKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSA 338 (373)
T ss_pred ccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcC
Confidence 1122445789999998888754 3579999999999885445556799999999999 788877
Q ss_pred cCCcEEEeC
Q 003279 826 HDKCVKIWK 834 (834)
Q Consensus 826 ~DG~I~IWd 834 (834)
.++.|.+||
T Consensus 339 ~~~~V~ViD 347 (373)
T 2mad_H 339 GTEVLHIYD 347 (373)
T ss_pred CCCeEEEEE
Confidence 589999986
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-13 Score=164.82 Aligned_cols=268 Identities=8% Similarity=-0.011 Sum_probs=183.4
Q ss_pred CCCCEEEEEeCCC-----cEEEEeCCCCeEEEEe------ccCCCCeEEEEECCCCCEEEEEeCCC-----eEEEEecCC
Q 003279 562 PDGKLLATGGHDK-----KAVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTEN 625 (834)
Q Consensus 562 pdg~~Lasgs~Dg-----~I~IWd~~t~~~~~~l------~~h~~~I~~l~fspdg~~Latgs~Dg-----~I~IWDl~s 625 (834)
|||++++....++ .|++.+...++....+ .+|...+..++|+|||++||.++.++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 8899887665332 3455555444433222 23445688999999999998776543 899999998
Q ss_pred CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc----------------EEEEECCCCcee--eEeec---CCCeeE
Q 003279 626 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE----------------IRYWSINNGSCA--GVFKC---QSGATQ 684 (834)
Q Consensus 626 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~----------------I~lwDl~s~~~i--~~~~~---~~~i~~ 684 (834)
++.....+. ...+.+++|+||++.++++.. ++. |++|++.++... ..+.. ...+..
T Consensus 161 g~~~~~~~~--~~~~~~~~wspDg~~l~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~ 237 (710)
T 2xdw_A 161 AKELPDVLE--RVKFSCMAWTHDGKGMFYNAY-PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG 237 (710)
T ss_dssp TEEEEEEEE--EECSCCEEECTTSSEEEEEEC-CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred CCCCccccc--CcccceEEEEeCCCEEEEEEE-CCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence 764322222 223678999999987776554 433 999999887632 22222 233678
Q ss_pred EEEecCCCEEEEEEc-----CCeEEEEECCC------Ce-EEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC---eEEEE
Q 003279 685 MRFQPRLGRILAAAI-----ENYISILDVET------QV-CRLKLQGHKNQVHSVCWNTSGEYLASVS--DE---LVRVW 747 (834)
Q Consensus 685 l~~sp~g~~ll~~s~-----dg~I~iwDl~t------~~-~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg---~I~Iw 747 (834)
+.|+|++++|++++. +..|++||+.+ +. ....+..+...+.. .|+++|..|+..+ ++ .|.+|
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~ 316 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINI 316 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence 999999999998876 56899999986 42 35556666666655 4888998777665 22 69999
Q ss_pred EcCCCCCceeEEEeecCCC--ceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEE
Q 003279 748 SIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVA 822 (834)
Q Consensus 748 Dl~s~~~~~~i~~~~~~~~--~I~svafspdg~~L~sgs~dg--~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~La 822 (834)
|+.++... ....+..+.. .+..++|++++.++++...++ .|++||+.+++.+ .+..+.+.|..++++|++..|+
T Consensus 317 d~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~ 395 (710)
T 2xdw_A 317 DFTDPEES-KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF 395 (710)
T ss_dssp ETTSCCGG-GCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred eCCCCCcc-cceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence 99876321 2233333433 678899997777777777777 5777888667644 5666778899999999987655
Q ss_pred EE-e---cCCcEEEeC
Q 003279 823 SA-S---HDKCVKIWK 834 (834)
Q Consensus 823 Sg-s---~DG~I~IWd 834 (834)
.. + ..+.|++||
T Consensus 396 ~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 396 YQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEECSSCCCEEEEEE
T ss_pred EEEeCCCCCCEEEEEE
Confidence 33 2 346787775
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-13 Score=143.78 Aligned_cols=233 Identities=7% Similarity=-0.085 Sum_probs=165.6
Q ss_pred CeEEEEECCCCCEEE-EEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceee
Q 003279 596 WITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 674 (834)
Q Consensus 596 ~I~~l~fspdg~~La-tgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~ 674 (834)
...++++++++++++ +.+.++.|.+||..+... ......+...+.++++++++. ++++.. ++.|.+||........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-TVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCCEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc-ceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceEee
Confidence 678999999998777 446788999999865432 111123345688999999877 555555 8899999987654432
Q ss_pred Ee-ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003279 675 VF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 752 (834)
Q Consensus 675 ~~-~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 752 (834)
.. .....+..+++++++..+++...++.|.+||..+.............+.+++++++|+++++.. ++.|.+||....
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~ 181 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 181 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence 21 1225688999999988666666678999998766544333223334678999999999777766 789999998765
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEec-cCCCCeEEEEEeCCCCEEEEEecCCcEE
Q 003279 753 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHDKCVK 831 (834)
Q Consensus 753 ~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~-~h~~~V~~lafspdg~~LaSgs~DG~I~ 831 (834)
. ...........+..++++++|..+++...++.|.+||..+....... .+...+.+++++++|+++++...++.|+
T Consensus 182 ~---~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~ 258 (270)
T 1rwi_B 182 N---QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV 258 (270)
T ss_dssp C---EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred c---eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEE
Confidence 2 22222223367889999999965555555779999999776554333 3346789999999999888888999999
Q ss_pred EeC
Q 003279 832 IWK 834 (834)
Q Consensus 832 IWd 834 (834)
+|+
T Consensus 259 ~~~ 261 (270)
T 1rwi_B 259 KLT 261 (270)
T ss_dssp EEC
T ss_pred EEc
Confidence 985
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.9e-13 Score=140.46 Aligned_cols=240 Identities=10% Similarity=0.035 Sum_probs=178.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEeccCC-CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccC-CCCe
Q 003279 563 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTV 640 (834)
Q Consensus 563 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~-~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h-~~~V 640 (834)
.+++|++++.|+.|.+||.++++.+..+..+. ..+.++.++|+|++|+ +.++.|+.||. +++. +..+..+ ...+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~-~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRE-LWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCE-EEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCE-EEEEcCCCCccc
Confidence 45789999999999999999999999998776 5789999999999888 45788999999 5554 5555544 3578
Q ss_pred EEEEEccCCCcEEEEEeC-CCcEEEEECCCCceeeEeecCC-------CeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003279 641 MSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQS-------GATQMRFQPRLGRILAAAIENYISILDVETQV 712 (834)
Q Consensus 641 ~sl~fspdg~~llasgs~-Dg~I~lwDl~s~~~i~~~~~~~-------~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~ 712 (834)
.++.+.++|..++ +.+. ++.|..+|. +++.+..+.... ....+.+.++++++++...++.|.+||.+ ++
T Consensus 80 ~~~~~~~dG~~lv-~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 80 QTARILPDGNALV-AWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp EEEEECTTSCEEE-EEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cccEECCCCCEEE-EecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence 8999999988555 4444 778888886 688777766422 24456788999999998889999999998 99
Q ss_pred EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC------CceEEEEEeCCCCEEEEEEc
Q 003279 713 CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG------NKFHSCVFHPTFPSLLVIGC 785 (834)
Q Consensus 713 ~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~------~~I~svafspdg~~L~sgs~ 785 (834)
.+.++... ..+.++.+.++|.+++++. ++.|..+|..++ +.+..+.... ..+..+...++|..+++...
T Consensus 157 ~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~ 232 (276)
T 3no2_A 157 LLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN---RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQ 232 (276)
T ss_dssp EEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC---CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEEC
T ss_pred EEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC---cEEEEecCCCCCCccccccccceEcCCCCEEEEecc
Confidence 99888754 4566788899999999888 668999999888 5666665332 23788889999987766532
Q ss_pred C--------CeEEEEEC-CCCeEE-Eecc--CCCCeEEEE
Q 003279 786 Y--------ETLELWNM-TENKTL-TLSA--HDKLVSSLA 813 (834)
Q Consensus 786 d--------g~I~Iwdl-~~~~~~-~l~~--h~~~V~~la 813 (834)
. +..+++++ .+++++ .+.. .-+.|..+|
T Consensus 233 g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 233 GHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp TTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred CccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 1 23356665 456655 3332 234455554
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-12 Score=138.16 Aligned_cols=239 Identities=10% Similarity=0.085 Sum_probs=169.7
Q ss_pred CCCCCeEEEEEcCCCCEEEE-------EeCCCcEEEEeCCCCeEEEEec----cCCCCeEEEEECCC-CCEEEEEeCCCe
Q 003279 550 ASTSKVESCHFSPDGKLLAT-------GGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPS-LSRLATSSADRT 617 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Las-------gs~Dg~I~IWd~~t~~~~~~l~----~h~~~I~~l~fspd-g~~Latgs~Dg~ 617 (834)
..-....+++|+++|.++++ +..++.|.+||..+++...... ++...+.+++++++ ++++++. .+..
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~ 93 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLG 93 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTE
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCC
Confidence 33445789999999988887 5778999999988877653322 24567899999999 6655544 4557
Q ss_pred EEEEecCCCCceeee-ecc----CCCCeEEEEEccCCCcEEEEEeCC---------------CcEEEEECCCCceeeEee
Q 003279 618 VRVWDTENPDYSLRT-FTG----HSTTVMSLDFHPSKEDLLCSCDNN---------------SEIRYWSINNGSCAGVFK 677 (834)
Q Consensus 618 I~IWDl~s~~~~i~~-~~~----h~~~V~sl~fspdg~~llasgs~D---------------g~I~lwDl~s~~~i~~~~ 677 (834)
|.+||.. +.. ... ... ....+.++++++++. ++++...+ +.|..||.. ++......
T Consensus 94 l~~~d~~-g~~-~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~ 169 (314)
T 1pjx_A 94 LLVVQTD-GTF-EEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT 169 (314)
T ss_dssp EEEEETT-SCE-EECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred EEEEeCC-CCE-EEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence 9999988 543 222 111 124588999999986 55455444 568888876 65554444
Q ss_pred cCCCeeEEEEe----cCCCEEEEEE-cCCeEEEEECC-CCe-----EEEEEeCCC-CCEEEEEEcCCCCEEEEEe-CCeE
Q 003279 678 CQSGATQMRFQ----PRLGRILAAA-IENYISILDVE-TQV-----CRLKLQGHK-NQVHSVCWNTSGEYLASVS-DELV 744 (834)
Q Consensus 678 ~~~~i~~l~~s----p~g~~ll~~s-~dg~I~iwDl~-t~~-----~~~~l~~h~-~~I~sl~~spdg~~Lasgs-Dg~I 744 (834)
.......++++ ++++.++++. .++.|.+||+. ++. ....+..+. ..+..++++++|.++++.. ++.|
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i 249 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI 249 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence 44567889999 9987776665 46899999986 443 223333343 5688999999999888876 7899
Q ss_pred EEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCC
Q 003279 745 RVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTE 796 (834)
Q Consensus 745 ~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~-dg~I~Iwdl~~ 796 (834)
.+||..++ ..+..+..+...+.+++|++++..|++++. ++.|..|++..
T Consensus 250 ~~~d~~~g---~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 250 EVFGPDGG---QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEECTTCB---SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEcCCCC---cEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99998765 334445555578999999999996766654 56899999865
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-13 Score=164.52 Aligned_cols=245 Identities=12% Similarity=0.048 Sum_probs=167.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCe--------
Q 003279 551 STSKVESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-------- 617 (834)
Q Consensus 551 H~~~V~sl~fSpdg~~Lasgs~D-----g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~-------- 617 (834)
|+..+..++|||||++||.++.+ ..|++||+.+++.+... .+...+..++|+|| +.|+.++.|+.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 44468899999999999987654 46999999999876532 12222368899999 99998887654
Q ss_pred ------EEEEecCCCCce-eeee--ccCCCCeEEEEEccCCCcEEEEEeC----CCcEEEEECCCC--c-eeeEeecCCC
Q 003279 618 ------VRVWDTENPDYS-LRTF--TGHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINNG--S-CAGVFKCQSG 681 (834)
Q Consensus 618 ------I~IWDl~s~~~~-i~~~--~~h~~~V~sl~fspdg~~llasgs~----Dg~I~lwDl~s~--~-~i~~~~~~~~ 681 (834)
|++|++.++... ...+ ..+...+..+.|+|||+.+++++.. ...|++||+.++ + ..........
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 899999775521 1222 2333468899999999977766653 348999999877 4 3333333334
Q ss_pred eeEEEEecCCCEEEEEEcC----CeEEEEECCCC--eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcC-CCC
Q 003279 682 ATQMRFQPRLGRILAAAIE----NYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGS 753 (834)
Q Consensus 682 i~~l~~sp~g~~ll~~s~d----g~I~iwDl~t~--~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~-s~~ 753 (834)
+... ++++++.|++.+.+ +.|.+||+.++ .....+..+...+.+++|+ ++.++++.. |+..+||.+. .+
T Consensus 319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g- 395 (741)
T 1yr2_A 319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG- 395 (741)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS-
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC-
Confidence 4444 45889999888764 45999999884 3444445455567778887 555666666 8876666554 23
Q ss_pred CceeEEEeec-CCCceEEEEEeCCCCEEEEEEc----CCeEEEEECCCCeEEEe
Q 003279 754 KGECIHELSC-TGNKFHSCVFHPTFPSLLVIGC----YETLELWNMTENKTLTL 802 (834)
Q Consensus 754 ~~~~i~~~~~-~~~~I~svafspdg~~L~sgs~----dg~I~Iwdl~~~~~~~l 802 (834)
.....+.. ....+..+.++|++..|+.... .+.|++||+.+++...+
T Consensus 396 --~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l 447 (741)
T 1yr2_A 396 --KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW 447 (741)
T ss_dssp --CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred --CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 34445543 3567888999999886664433 25899999998875544
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-13 Score=163.49 Aligned_cols=268 Identities=11% Similarity=-0.016 Sum_probs=174.0
Q ss_pred cCCCCEEEEEeCCC-----cEEEEeCCCCeEEEEec------cCCCCeEEEEECCCCCEEEEE-----eCCCeEEEEecC
Q 003279 561 SPDGKLLATGGHDK-----KAVLWCTESFTVKSTLE------EHTQWITDVRFSPSLSRLATS-----SADRTVRVWDTE 624 (834)
Q Consensus 561 Spdg~~Lasgs~Dg-----~I~IWd~~t~~~~~~l~------~h~~~I~~l~fspdg~~Latg-----s~Dg~I~IWDl~ 624 (834)
+|+|++++....++ .|++.+...++....+. +|...+.+++|+|||++||.+ +.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 37899888776544 24444554554433332 455679999999999999843 345689999999
Q ss_pred CCCce-eeeeccCCCCeEEEEEccCCCcEEEEEeCCCc-------------EEEEECCCCce--eeEeec---CCCeeEE
Q 003279 625 NPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-------------IRYWSINNGSC--AGVFKC---QSGATQM 685 (834)
Q Consensus 625 s~~~~-i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~-------------I~lwDl~s~~~--i~~~~~---~~~i~~l 685 (834)
++... ...+.. .....++|+||++.++++ +.|.. |++|++.++.. ...+.. ...+..+
T Consensus 156 tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~-~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~ 232 (695)
T 2bkl_A 156 SGEWSKVDVIEG--GKYATPKWTPDSKGFYYE-WLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS 232 (695)
T ss_dssp TCCBCSSCCBSC--CTTCCCEECTTSSEEEEE-ECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred CCCCcCCcccCc--ccccceEEecCCCEEEEE-EecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence 87642 111111 112689999999866654 44444 99999998763 222222 2457899
Q ss_pred EEecCCCEEEEEEcCC----eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCcee
Q 003279 686 RFQPRLGRILAAAIEN----YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGEC 757 (834)
Q Consensus 686 ~~sp~g~~ll~~s~dg----~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~ 757 (834)
.|+|+|++|++++.++ .|+++|..++... .+..+...+....| ++|.+++.+. ++.|.+||+.++.....
T Consensus 233 ~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 310 (695)
T 2bkl_A 233 DLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASW 310 (695)
T ss_dssp EECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred EECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCC
Confidence 9999999998888766 7888877665433 33345555666666 5555444443 35899999987632112
Q ss_pred EEEeecC-CCceEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCeEEEeccC-CCCeEEEEEeCCCCEEEEEe----cCCc
Q 003279 758 IHELSCT-GNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTLSAH-DKLVSSLAASTVNGMVASAS----HDKC 829 (834)
Q Consensus 758 i~~~~~~-~~~I~svafspdg~~L~sgs~dg~I~Iw--dl~~~~~~~l~~h-~~~V~~lafspdg~~LaSgs----~DG~ 829 (834)
...+..+ ...+..++|+ ++..+++...++..+|| ++..+....+..+ .+.|..++++|++..|+... .++.
T Consensus 311 ~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~ 389 (695)
T 2bkl_A 311 KEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQ 389 (695)
T ss_dssp EEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEE
T ss_pred eEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence 2223322 4567888888 66677777888866666 4444434344444 66788899999998666332 3477
Q ss_pred EEEeC
Q 003279 830 VKIWK 834 (834)
Q Consensus 830 I~IWd 834 (834)
|++||
T Consensus 390 v~~~d 394 (695)
T 2bkl_A 390 IYKTS 394 (695)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88875
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-11 Score=127.93 Aligned_cols=238 Identities=11% Similarity=0.038 Sum_probs=168.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE-EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 628 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~-~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~ 628 (834)
.+...+.+++++++|.++++...++.|..||.. ++.. ..+......+.++++.+++.++++...++.|.+||. ++..
T Consensus 54 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~ 131 (299)
T 2z2n_A 54 TPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI 131 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE
T ss_pred cccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE
Confidence 345679999999999988877778899999976 3332 223335567899999999988888777889999998 4443
Q ss_pred eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeE-ee-cCCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 003279 629 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQPRLGRILAAAIENYISIL 706 (834)
Q Consensus 629 ~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~-~~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iw 706 (834)
.......+...+.++++.+++. ++++...++.|.+||. +++.... .. ....+..+++++++..+++...++.|.+|
T Consensus 132 ~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 209 (299)
T 2z2n_A 132 REYELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRI 209 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EEecCCCCCCCCceEEEcCCCC-EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEE
Confidence 2222333456789999999875 6656666789999999 6665442 11 23457889999998866555567899999
Q ss_pred ECCCCeEEE-EEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeE-EEeecCCCceEEEEEeCCCCEEEEE
Q 003279 707 DVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI-HELSCTGNKFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 707 Dl~t~~~~~-~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i-~~~~~~~~~I~svafspdg~~L~sg 783 (834)
|. ++.... .+..+...+.+++++++|.++++.. ++.|.+||. ++ ... ..+..+...+.++++ +++. |+++
T Consensus 210 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g---~~~~~~~~~~~~~~~~i~~-~~g~-l~v~ 282 (299)
T 2z2n_A 210 TT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NN---IIEEYPIQIKSAEPHGICF-DGET-IWFA 282 (299)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TT---EEEEEECSSSSCCEEEEEE-CSSC-EEEE
T ss_pred CC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CC---ceEEEeCCCCCCccceEEe-cCCC-EEEE
Confidence 99 665432 2333556799999999999777765 789999998 33 221 123344567889999 8777 4455
Q ss_pred EcCCeEEEEECCCCe
Q 003279 784 GCYETLELWNMTENK 798 (834)
Q Consensus 784 s~dg~I~Iwdl~~~~ 798 (834)
+..+.|..++..+++
T Consensus 283 ~~~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 283 MECDKIGKLTLIKDN 297 (299)
T ss_dssp ETTTEEEEEEEC---
T ss_pred ecCCcEEEEEcCccc
Confidence 546778888876654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-11 Score=133.98 Aligned_cols=235 Identities=12% Similarity=0.067 Sum_probs=169.7
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeccC-------CCCeEEEEECCCCCEEEEEeC--CCe
Q 003279 557 SCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLSRLATSSA--DRT 617 (834)
Q Consensus 557 sl~fSpdg~~Lasgs----------~Dg~I~IWd~~t~~~~~~l~~h-------~~~I~~l~fspdg~~Latgs~--Dg~ 617 (834)
.++|+|||++|+++. .++.|.+||..+++.+..+... ......++|+|||++|+++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999999886 3678999999998888776432 123458999999999999874 478
Q ss_pred EEEEecCCCCceeee-eccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-----c-CCC-eeEEEEec
Q 003279 618 VRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----C-QSG-ATQMRFQP 689 (834)
Q Consensus 618 I~IWDl~s~~~~i~~-~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-----~-~~~-i~~l~~sp 689 (834)
|.++| .+++. +.. +.. . .|+.+.|++...+++.+.||.+.+||. +++.+.... . ... .....+.+
T Consensus 150 v~viD-~t~~~-~~~~i~~-~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~ 222 (373)
T 2mad_H 150 VGLVV-QGGSS-DDQLLSS-P---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN 222 (373)
T ss_pred EEEEE-CCCCE-EeEEcCC-C---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEe
Confidence 99999 87654 444 322 1 235566777777778888999999999 887764332 1 111 12345677
Q ss_pred CCCEEEEEEcCCeEEEEECCCCe--EEEEEeC----------CCCCEEEEEEcCCCCEEEEEe-----------CCeEEE
Q 003279 690 RLGRILAAAIENYISILDVETQV--CRLKLQG----------HKNQVHSVCWNTSGEYLASVS-----------DELVRV 746 (834)
Q Consensus 690 ~g~~ll~~s~dg~I~iwDl~t~~--~~~~l~~----------h~~~I~sl~~spdg~~Lasgs-----------Dg~I~I 746 (834)
+++.++..+.++.+.++|+.... .+..+.- .......++++++++.+++.. .+.|.+
T Consensus 223 ~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~V 302 (373)
T 2mad_H 223 KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS 302 (373)
T ss_pred cCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEE
Confidence 77776666688999999997652 2222221 122344578899998877754 247999
Q ss_pred EEcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCeEEEe
Q 003279 747 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTL 802 (834)
Q Consensus 747 wDl~s~~~~~~i~~~~~~~~~I~svafspdg~-~L~sgs-~dg~I~Iwdl~~~~~~~l 802 (834)
+|+.+. +.+..+.. ......++|+|||+ .++++. .++.|.+||+.+++.+..
T Consensus 303 ID~~t~---~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 303 VTGLVG---QTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EECCCC---EEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 999887 66666643 44688999999999 677766 478999999999998854
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.52 E-value=4.4e-12 Score=135.59 Aligned_cols=238 Identities=8% Similarity=-0.015 Sum_probs=163.8
Q ss_pred CCCCeEEEEECCCCCEEEE-------EeCCCeEEEEecCCCCceeeee---ccCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 003279 593 HTQWITDVRFSPSLSRLAT-------SSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEI 662 (834)
Q Consensus 593 h~~~I~~l~fspdg~~Lat-------gs~Dg~I~IWDl~s~~~~i~~~---~~h~~~V~sl~fspdg~~llasgs~Dg~I 662 (834)
.-....+++|++++.++++ +..++.|.+||..+++...... .++...+.++++++++..++++.. +..|
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCE
Confidence 3445789999999988887 5778899999987765421111 124567899999998333554443 4579
Q ss_pred EEEECCCCceeeE-eec-----CCCeeEEEEecCCCEEEEEEcC---------------CeEEEEECCCCeEEEEEeCCC
Q 003279 663 RYWSINNGSCAGV-FKC-----QSGATQMRFQPRLGRILAAAIE---------------NYISILDVETQVCRLKLQGHK 721 (834)
Q Consensus 663 ~lwDl~s~~~i~~-~~~-----~~~i~~l~~sp~g~~ll~~s~d---------------g~I~iwDl~t~~~~~~l~~h~ 721 (834)
.+||.. ++.... ... ...+.++++++++..+++...+ +.|..||.. ++..... .+.
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~ 171 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAF 171 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEE
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCC
Confidence 999998 765443 221 1347899999998877666554 578888876 5443332 234
Q ss_pred CCEEEEEEc----CCCCEEEEEe--CCeEEEEEcC-CCCC--ceeEEEeecCC-CceEEEEEeCCCCEEEEEEcCCeEEE
Q 003279 722 NQVHSVCWN----TSGEYLASVS--DELVRVWSIG-SGSK--GECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLEL 791 (834)
Q Consensus 722 ~~I~sl~~s----pdg~~Lasgs--Dg~I~IwDl~-s~~~--~~~i~~~~~~~-~~I~svafspdg~~L~sgs~dg~I~I 791 (834)
.....++|+ ++++.|+++. ++.|.+||+. .+.. ...+..+..+. ..+..++++++|..+++...++.|.+
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~ 251 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV 251 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEE
Confidence 457889999 9997665554 7899999986 3311 01222333333 56788999999987777777889999
Q ss_pred EECCCCeEE-EeccCCCCeEEEEEeCCCCEEE-EEecCCcEEEeC
Q 003279 792 WNMTENKTL-TLSAHDKLVSSLAASTVNGMVA-SASHDKCVKIWK 834 (834)
Q Consensus 792 wdl~~~~~~-~l~~h~~~V~~lafspdg~~La-Sgs~DG~I~IWd 834 (834)
||..+++.+ .+..+...+.+++|+++++.|+ +...++.|..|+
T Consensus 252 ~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 252 FGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp ECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 999866554 4445667899999999999554 445567787764
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-12 Score=145.98 Aligned_cols=266 Identities=8% Similarity=0.045 Sum_probs=188.7
Q ss_pred CCCCEEEEEeCC-----CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe----------CCCeEEEEecCCC
Q 003279 562 PDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENP 626 (834)
Q Consensus 562 pdg~~Lasgs~D-----g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs----------~Dg~I~IWDl~s~ 626 (834)
+++++++++... +.|.++|..+++.+.++..-..+ .++++||+++|+++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 467766666542 69999999999999999766666 899999999988876 3678999999987
Q ss_pred Cceeeeec-c------CCCCeEEEEEccCCCcEEEEEeC-CCcEEEEECCCCceeeEeecCCCeeEEEEecCC-CEEEEE
Q 003279 627 DYSLRTFT-G------HSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAA 697 (834)
Q Consensus 627 ~~~i~~~~-~------h~~~V~sl~fspdg~~llasgs~-Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g-~~ll~~ 697 (834)
+. +..+. + .......+.|+||+++++++... ++.|.++|+.+++.+..+..... ....|++ ..+++.
T Consensus 160 ~v-v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LP-IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMN 235 (426)
T ss_dssp CE-EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEE
T ss_pred cE-EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEE
Confidence 64 43332 2 12345678999999977766543 68999999999999988886432 3344433 566777
Q ss_pred EcCCeEEEEECCCCeEEEEE----eCCCCCE-EEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec--------
Q 003279 698 AIENYISILDVETQVCRLKL----QGHKNQV-HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-------- 763 (834)
Q Consensus 698 s~dg~I~iwDl~t~~~~~~l----~~h~~~I-~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-------- 763 (834)
+.||.+.+.++.+++..... .....++ ..+.|.+++..++... .+.|.+.|+..... ..+..+..
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~-~v~~~~~~~~~~~i~~ 314 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA-TFRAPIEALTEAERAD 314 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE-EECCCEESSCTTTGGG
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce-EEeeeeeecccccccc
Confidence 78899888888666544321 1111121 2356789888777767 88999999876421 11111110
Q ss_pred --CCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCC-EEEEEe-cCCc
Q 003279 764 --TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKC 829 (834)
Q Consensus 764 --~~~~I~svafspdg~~L~sgs~----------dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~-~LaSgs-~DG~ 829 (834)
.......+++++++..+++... .+.|.++|+.+.+.+....-.....+++|+||++ +++++. .++.
T Consensus 315 g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~ 394 (426)
T 3c75_H 315 DWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQT 394 (426)
T ss_dssp TEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTE
T ss_pred ccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCe
Confidence 0011223689999998888753 3479999999999885444444689999999999 888888 5899
Q ss_pred EEEeC
Q 003279 830 VKIWK 834 (834)
Q Consensus 830 I~IWd 834 (834)
|.|+|
T Consensus 395 VsVID 399 (426)
T 3c75_H 395 LHIYD 399 (426)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99986
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=8.8e-12 Score=138.22 Aligned_cols=252 Identities=12% Similarity=0.130 Sum_probs=175.2
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeccCC-------CCeEEEEECCCCCEEEEEeC--CCe
Q 003279 557 SCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHT-------QWITDVRFSPSLSRLATSSA--DRT 617 (834)
Q Consensus 557 sl~fSpdg~~Lasgs----------~Dg~I~IWd~~t~~~~~~l~~h~-------~~I~~l~fspdg~~Latgs~--Dg~ 617 (834)
.++++|||++|++++ .++.|.+||..+++.+.++.... .....++|+|||++|+++.. ++.
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 161 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence 399999999888775 36789999999999998875321 24567999999999998874 689
Q ss_pred EEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-CceeeEeec-----CCCe-eEEEEecC
Q 003279 618 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-----QSGA-TQMRFQPR 690 (834)
Q Consensus 618 I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s-~~~i~~~~~-----~~~i-~~l~~sp~ 690 (834)
|.++|+.+.+. +..+.... |..+.|.+...+++.+.||.+.++++.+ ++....... ...+ ....|.+.
T Consensus 162 VsVID~~t~~v-v~tI~v~g----~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~ 236 (386)
T 3sjl_D 162 VGVVDLEGKAF-KRMLDVPD----CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK 236 (386)
T ss_dssp EEEEETTTTEE-EEEEECCS----EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETT
T ss_pred EEEEECCCCcE-EEEEECCC----cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcC
Confidence 99999998764 44443211 1223455555666777799999999976 554322111 0111 12456533
Q ss_pred CCEEEEEEcCCeEEEEECCCCe--EEEEEe---------C-CCCCEEEEEEcCCCCEEEEEe-C----------CeEEEE
Q 003279 691 LGRILAAAIENYISILDVETQV--CRLKLQ---------G-HKNQVHSVCWNTSGEYLASVS-D----------ELVRVW 747 (834)
Q Consensus 691 g~~ll~~s~dg~I~iwDl~t~~--~~~~l~---------~-h~~~I~sl~~spdg~~Lasgs-D----------g~I~Iw 747 (834)
.+.++..+.+|.|+++|+.+.. ....+. + ....+..+++++++..++... + ++|.++
T Consensus 237 dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~vi 316 (386)
T 3sjl_D 237 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVL 316 (386)
T ss_dssp TTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred CCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEE
Confidence 3455567778999999997653 332222 0 112333577799998888764 1 479999
Q ss_pred EcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEEc-CCeEEEEECCCCeEEEeccCCCCeEEEEEeCC
Q 003279 748 SIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGC-YETLELWNMTENKTLTLSAHDKLVSSLAASTV 817 (834)
Q Consensus 748 Dl~s~~~~~~i~~~~~~~~~I~svafspdg~-~L~sgs~-dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspd 817 (834)
|+.+. +.+..+.. ...+..+++++|++ .|+++.. ++.|.++|..+++.+......+....|.+++|
T Consensus 317 D~~t~---kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 317 DAKTG---ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp ETTTC---CEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred ECCCC---eEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 99998 55655554 23678999999996 6776554 78999999999999866666666667777776
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-12 Score=156.88 Aligned_cols=268 Identities=12% Similarity=0.021 Sum_probs=172.1
Q ss_pred cCCCCEEEEEeCCCc---EEEE--eCC---CCeEEEEe------ccCCCCeEEEEECCCCCEEEEEeCC-----CeEEEE
Q 003279 561 SPDGKLLATGGHDKK---AVLW--CTE---SFTVKSTL------EEHTQWITDVRFSPSLSRLATSSAD-----RTVRVW 621 (834)
Q Consensus 561 Spdg~~Lasgs~Dg~---I~IW--d~~---t~~~~~~l------~~h~~~I~~l~fspdg~~Latgs~D-----g~I~IW 621 (834)
+|||++++....++. ..|| +.. .++....+ .+|...+..++|+|||++|+.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 389998887765443 4455 443 33333221 2344468899999999999887654 469999
Q ss_pred ecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC-------------cEEEEECCCCce--eeEeecC---CCee
Q 003279 622 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-------------EIRYWSINNGSC--AGVFKCQ---SGAT 683 (834)
Q Consensus 622 Dl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg-------------~I~lwDl~s~~~--i~~~~~~---~~i~ 683 (834)
|+.+++. +.. ..+...+..++|+|| +.++++...+. .|++|++.++.. ...+... ..+.
T Consensus 195 dl~tg~~-~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~ 271 (741)
T 1yr2_A 195 GVADGKP-LAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGH 271 (741)
T ss_dssp ETTTCCE-EEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred ECCCCCC-CCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEE
Confidence 9998764 221 112223467899999 77776654322 399999987753 2233322 2478
Q ss_pred EEEEecCCCEEEEEEcCC-----eEEEEECCCC--eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C----CeEEEEEcCC
Q 003279 684 QMRFQPRLGRILAAAIEN-----YISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-D----ELVRVWSIGS 751 (834)
Q Consensus 684 ~l~~sp~g~~ll~~s~dg-----~I~iwDl~t~--~~~~~l~~h~~~I~sl~~spdg~~Lasgs-D----g~I~IwDl~s 751 (834)
.+.|+|+|++|++.+.++ .|++||+.++ .+...+..+...+.... +|+|..|+..+ + +.|.+||+.+
T Consensus 272 ~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 272 GASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp EEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred EEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 999999999999888654 8999999887 31445555555555554 48888887766 2 3599999887
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCeEEEecc-CCCCeEEEEEeCCCCEEE-EEe--
Q 003279 752 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTLSA-HDKLVSSLAASTVNGMVA-SAS-- 825 (834)
Q Consensus 752 ~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iw--dl~~~~~~~l~~-h~~~V~~lafspdg~~La-Sgs-- 825 (834)
+. ......+..+...+..++|+ ++..+++...++..+|| ++..+....+.. +.+.|..++++|++..|+ +.+
T Consensus 351 ~~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~ 428 (741)
T 1yr2_A 351 ST-PRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSF 428 (741)
T ss_dssp SS-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEET
T ss_pred Cc-cccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCC
Confidence 42 12333334444556677887 55566777778755555 554444444443 467789999999987555 322
Q ss_pred -cCCcEEEeC
Q 003279 826 -HDKCVKIWK 834 (834)
Q Consensus 826 -~DG~I~IWd 834 (834)
..+.|++||
T Consensus 429 ~~P~~i~~~d 438 (741)
T 1yr2_A 429 TQPATVLALD 438 (741)
T ss_dssp TEEEEEEEEE
T ss_pred CCCCEEEEEE
Confidence 347788775
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-11 Score=130.44 Aligned_cols=215 Identities=12% Similarity=0.041 Sum_probs=166.1
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWC 580 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~-~~V~sl~fSpdg~~Lasgs~Dg~I~IWd 580 (834)
.++++++++.|+.|.+|...+. .. +..+..|. ..+.++.++|+|++|+ +.++.|..||
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG----------------~~---~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d 62 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK----------------EI---VWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMIT 62 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT----------------EE---EEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEEC
T ss_pred CCcEEEeeCCCCEEEEEECCCC----------------eE---EEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEEC
Confidence 3578899999999999954322 21 23333444 4688999999999888 4578899999
Q ss_pred CCCCeEEEEeccCC-CCeEEEEECCCCCEEEEEeC-CCeEEEEecCCCCceeeeec------cCCCCeEEEEEccCCCcE
Q 003279 581 TESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHPSKEDL 652 (834)
Q Consensus 581 ~~t~~~~~~l~~h~-~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~s~~~~i~~~~------~h~~~V~sl~fspdg~~l 652 (834)
. +++.+..+..+. ..+.++.+.++|++|++.+. ++.|..+|.+ ++. +..+. .+......+++.++++ +
T Consensus 63 ~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~-l~~~~~~~~~~~~~~~~~~v~~~~~G~-~ 138 (276)
T 3no2_A 63 R-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEV-LSKTEFETGIERPHAQFRQINKNKKGN-Y 138 (276)
T ss_dssp T-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCE-EEEEEECCSCSSGGGSCSCCEECTTSC-E
T ss_pred C-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-CCE-EEEEeccCCCCcccccccCceECCCCC-E
Confidence 8 899998887653 57889999999999999887 7788888764 343 33322 1223455667888877 6
Q ss_pred EEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC------CCEEE
Q 003279 653 LCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK------NQVHS 726 (834)
Q Consensus 653 lasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~------~~I~s 726 (834)
+++...++.|.+||.. ++.+..+.....+..+.+.++++.++++..++.|..||..+++.+.++..+. ..+.+
T Consensus 139 lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~ 217 (276)
T 3no2_A 139 LVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQ 217 (276)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEE
T ss_pred EEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcccccccc
Confidence 6688889999999998 9999999887778888899999999888888899999999999999886432 23788
Q ss_pred EEEcCCCCEEEEEeCC
Q 003279 727 VCWNTSGEYLASVSDE 742 (834)
Q Consensus 727 l~~spdg~~LasgsDg 742 (834)
+...++|.++++..+|
T Consensus 218 ~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 218 LFPLQNGGLYICNWQG 233 (276)
T ss_dssp EEECTTSCEEEEEECT
T ss_pred ceEcCCCCEEEEeccC
Confidence 8899999998887543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-12 Score=154.29 Aligned_cols=245 Identities=13% Similarity=0.041 Sum_probs=168.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-----CCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCe-------
Q 003279 550 ASTSKVESCHFSPDGKLLATGG-----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT------- 617 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs-----~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~------- 617 (834)
+|...|..++|||||++||.+. .+..|+|||+++++.+... .+......++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 4555688999999999998643 2357999999999866431 111113578899 9999999988743
Q ss_pred ------EEEEecCCCCc---eeeeecc-CCCCeEEEEEccCCCcEEEEEeCC---CcEEEEECCCCc-eeeEeec-CCCe
Q 003279 618 ------VRVWDTENPDY---SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGS-CAGVFKC-QSGA 682 (834)
Q Consensus 618 ------I~IWDl~s~~~---~i~~~~~-h~~~V~sl~fspdg~~llasgs~D---g~I~lwDl~s~~-~i~~~~~-~~~i 682 (834)
|++|++.++.. .+..... |...+..+.|+||++.++++.+.+ ..|+++|+.++. ....+.. ....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 99999987653 2222233 445678899999999888776533 589999998763 2333333 3333
Q ss_pred eEEEEecCCCEEEEEEcC----CeEEEEECCCCeE--EEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCC
Q 003279 683 TQMRFQPRLGRILAAAIE----NYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSG 752 (834)
Q Consensus 683 ~~l~~sp~g~~ll~~s~d----g~I~iwDl~t~~~--~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~ 752 (834)
... ++++++.|++.+.. +.|.++|+.++.. ...+..|...+. .|++++.+|+... ++ .|++||+..+
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 333 67777877766653 5799999988643 234555665555 8889999888776 54 7899988744
Q ss_pred CCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCeEEEec
Q 003279 753 SKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTLS 803 (834)
Q Consensus 753 ~~~~~i~~~~~-~~~~I~svafspdg~~L~sgs~d----g~I~Iwdl~~~~~~~l~ 803 (834)
....+.. ....+..+.+++++..|+....+ +.|+.||+.+++...+.
T Consensus 361 ----~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 361 ----RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR 412 (693)
T ss_dssp ----EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred ----eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence 2333332 34557777888888877776655 68999999888755443
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-10 Score=121.72 Aligned_cols=234 Identities=8% Similarity=-0.047 Sum_probs=168.3
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 003279 592 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 671 (834)
Q Consensus 592 ~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~ 671 (834)
.....+.++++.+++.++++...++.|.+||.. +......+..+...+.++++.+++. ++++...++.|..||.. ++
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGD-IWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SC
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCC-EEEEecCCCeEEEECCC-CC
Confidence 445678999999999988877778999999988 4432222333446789999998876 55565557889999988 55
Q ss_pred eeeEeec---CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEE-EEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEE
Q 003279 672 CAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRV 746 (834)
Q Consensus 672 ~i~~~~~---~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~-~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~I 746 (834)
.. .+.. ...+..+++.+++..+++...++.|..||.. ++.. ..+......+.+++++++++++++.. ++.|.+
T Consensus 94 ~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 171 (300)
T 2qc5_A 94 FT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR 171 (300)
T ss_dssp EE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred eE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence 43 3332 3568899999988876666667899999998 5444 23333456789999999999777666 778999
Q ss_pred EEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE--eccCCCCeEEEEEeCCCCEEEEE
Q 003279 747 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT--LSAHDKLVSSLAASTVNGMVASA 824 (834)
Q Consensus 747 wDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~--l~~h~~~V~~lafspdg~~LaSg 824 (834)
||. ++. ............+..+++++++..+++....+.|.+||. +++... ...+...+.+++++++|.++++.
T Consensus 172 ~~~-~g~--~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 172 ITN-TGK--LEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp ECT-TCC--EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred ECC-CCc--EEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEec
Confidence 998 442 111222234456889999999975555555668999998 555443 33455678999999999977776
Q ss_pred ecCCcEEEeC
Q 003279 825 SHDKCVKIWK 834 (834)
Q Consensus 825 s~DG~I~IWd 834 (834)
..++.|.+||
T Consensus 248 ~~~~~i~~~~ 257 (300)
T 2qc5_A 248 WGANQIGRIT 257 (300)
T ss_dssp TTTTEEEEEC
T ss_pred cCCCeEEEEC
Confidence 6678888775
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-10 Score=124.31 Aligned_cols=229 Identities=10% Similarity=0.036 Sum_probs=156.8
Q ss_pred EeccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 003279 589 TLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 667 (834)
Q Consensus 589 ~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl 667 (834)
.+..+.....+..|++++ .++++...++.|+.||..++.. ..+ .....+.++++++++. ++++ . +..|.+||.
T Consensus 7 ~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~-~~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~ 80 (297)
T 3g4e_A 7 VLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV--QRV-TMDAPVSSVALRQSGG-YVAT-I-GTKFCALNW 80 (297)
T ss_dssp EECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEE-ECSSCEEEEEEBTTSS-EEEE-E-TTEEEEEET
T ss_pred EeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE--EEE-eCCCceEEEEECCCCC-EEEE-E-CCeEEEEEC
Confidence 344455567789999964 4566666789999999987653 222 2456799999999988 4433 3 568999999
Q ss_pred CCCceeeEeecC-----CCeeEEEEecCCCEEEEEEcC-----------CeEEEEECCCCeEEEEEeCCCCCEEEEEEcC
Q 003279 668 NNGSCAGVFKCQ-----SGATQMRFQPRLGRILAAAIE-----------NYISILDVETQVCRLKLQGHKNQVHSVCWNT 731 (834)
Q Consensus 668 ~s~~~i~~~~~~-----~~i~~l~~sp~g~~ll~~s~d-----------g~I~iwDl~t~~~~~~l~~h~~~I~sl~~sp 731 (834)
.+++........ ..+..++++++|+.+++.... +.|+.+|.. +.... +..+......++|+|
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~sp 158 (297)
T 3g4e_A 81 KEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSL 158 (297)
T ss_dssp TTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECT
T ss_pred CCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcC
Confidence 988765444321 237789999998865544322 345555543 33322 222344578999999
Q ss_pred CCCEEEEEe--CCeEEEEEcC--CCCCc--eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-Eecc
Q 003279 732 SGEYLASVS--DELVRVWSIG--SGSKG--ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA 804 (834)
Q Consensus 732 dg~~Lasgs--Dg~I~IwDl~--s~~~~--~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~ 804 (834)
+++.|+.+. ++.|.+||+. ++... ..+..+......+..++++++|...++....+.|.+||..+++.+ .+..
T Consensus 159 dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 159 DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence 999776655 7899999984 44211 122333334456789999999986666666778999999988876 4555
Q ss_pred CCCCeEEEEEe-CCCCEEEEEe
Q 003279 805 HDKLVSSLAAS-TVNGMVASAS 825 (834)
Q Consensus 805 h~~~V~~lafs-pdg~~LaSgs 825 (834)
+...+++++|. |+++.|+.++
T Consensus 239 p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 239 PVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp SSSBEEEEEEESGGGCEEEEEE
T ss_pred CCCCceEEEEeCCCCCEEEEEc
Confidence 66789999998 8887665544
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.2e-11 Score=134.88 Aligned_cols=230 Identities=10% Similarity=0.020 Sum_probs=162.0
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC--cEEEEECCCCce
Q 003279 595 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSC 672 (834)
Q Consensus 595 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg--~I~lwDl~s~~~ 672 (834)
.....|+|+++++++++...++.|++||..++.. ..+........ ++|++++..++ +++.++ .|.+|+...+..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~--~~~~~~~~~~~-ia~~~~g~~l~-~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV--TTVHPGFKGGK-PAVTKDKQRVY-SIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE--EEEEETCCBCB-CEECTTSSEEE-EEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE--EEeeccCCCCc-eeEecCCCcEE-EEecCCCceEEEEEcCCCce
Confidence 4578999999999777777789999999987543 22222233334 99999988555 454444 899999877655
Q ss_pred eeEe----e-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE----EeCCCCCE--EEEEEcCCCCEEEEEe-
Q 003279 673 AGVF----K-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK----LQGHKNQV--HSVCWNTSGEYLASVS- 740 (834)
Q Consensus 673 i~~~----~-~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~----l~~h~~~I--~sl~~spdg~~Lasgs- 740 (834)
...+ . ....+.+++++|+++.|+++..++.|+.||..++..... ..++.... ..++|+|++..|+.+.
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 4444 2 335678899999777787777788999999987754332 22222222 3999999644444444
Q ss_pred -CCeEEEEEcCCCCCceeEEEeecC---------------CCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEec
Q 003279 741 -DELVRVWSIGSGSKGECIHELSCT---------------GNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLS 803 (834)
Q Consensus 741 -Dg~I~IwDl~s~~~~~~i~~~~~~---------------~~~I~svafspdg~~L~sgs-~dg~I~Iwdl~~~~~~~l~ 803 (834)
++.|+.|+.... +..+..+ -.....++++++|..+++-. .++.|+.|++.++.+..+.
T Consensus 287 ~~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 287 NLSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp TTTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 779999987643 2222222 23478999999999555555 5779999998888877665
Q ss_pred cC---------------CCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 804 AH---------------DKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 804 ~h---------------~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
++ -.....|++++++.++++-..++.|+.+
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence 55 2468999999998888887788888765
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-10 Score=124.29 Aligned_cols=232 Identities=13% Similarity=0.109 Sum_probs=159.0
Q ss_pred ecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCC
Q 003279 548 IPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 548 l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~ 626 (834)
+..+..-..+..|++++ .++++...++.|+.||..+++.. .+ .....+.+++++++++++++ . +..|.+||..++
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ 83 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence 33444456789999964 45666667899999999887653 33 24567999999999995554 3 567999999875
Q ss_pred Cceeeeec---cCCCCeEEEEEccCCCcEEEEEeC--------CCcEEEEECCC-CceeeEeecCCCeeEEEEecCCCEE
Q 003279 627 DYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDN--------NSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRI 694 (834)
Q Consensus 627 ~~~i~~~~---~h~~~V~sl~fspdg~~llasgs~--------Dg~I~lwDl~s-~~~i~~~~~~~~i~~l~~sp~g~~l 694 (834)
........ .....+.+++++|+|..++.+... .....+|.+.. ++.............++|+|+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~l 163 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIF 163 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEE
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEE
Confidence 53211111 122458899999998744433221 12234444432 4444444444557889999999988
Q ss_pred EEEEc-CCeEEEEEC--CCCeE-----EEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC
Q 003279 695 LAAAI-ENYISILDV--ETQVC-----RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 765 (834)
Q Consensus 695 l~~s~-dg~I~iwDl--~t~~~-----~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~ 765 (834)
+++.. ++.|.+||+ .++.. ...+..+...+..++++++|.+.++.. .+.|.+||..++ +.+..+....
T Consensus 164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG---~~~~~i~~p~ 240 (297)
T 3g4e_A 164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG---KRLQTVKLPV 240 (297)
T ss_dssp EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC---CEEEEEECSS
T ss_pred EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc---eEEEEEECCC
Confidence 76665 689999987 45532 222333445788999999998887776 778999999877 5667777766
Q ss_pred CceEEEEEe-CCCCEEEEEEcC
Q 003279 766 NKFHSCVFH-PTFPSLLVIGCY 786 (834)
Q Consensus 766 ~~I~svafs-pdg~~L~sgs~d 786 (834)
..+++++|. |+++.|++++..
T Consensus 241 ~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 241 DKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp SBEEEEEEESGGGCEEEEEEBC
T ss_pred CCceEEEEeCCCCCEEEEEcCC
Confidence 789999998 888888777654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-10 Score=131.52 Aligned_cols=232 Identities=9% Similarity=0.035 Sum_probs=164.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC--eEEEEecCCCCcee
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSL 630 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg--~I~IWDl~s~~~~i 630 (834)
.....|+|+++++++++...++.|++||.+++.......... ... ++|++++..|+++..++ .|.+|+...... .
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-P 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-E
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-e
Confidence 467899999999977777778999999999887776655433 334 99999999999988866 799998876543 2
Q ss_pred eee----ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeE----eecCCCe--e-EEEEecCCCEEEEEEc
Q 003279 631 RTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKCQSGA--T-QMRFQPRLGRILAAAI 699 (834)
Q Consensus 631 ~~~----~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~----~~~~~~i--~-~l~~sp~g~~ll~~s~ 699 (834)
..+ ......+.+++++|++..+++ +..++.|+.||..++..... ....... . .++|+|+++.|+++..
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 222 224567889999996565665 66788999999987764332 1111222 2 9999997666666654
Q ss_pred -CCeEEEEECCCCeEEEEEeCCC---------------CCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEe
Q 003279 700 -ENYISILDVETQVCRLKLQGHK---------------NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHEL 761 (834)
Q Consensus 700 -dg~I~iwDl~t~~~~~~l~~h~---------------~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~ 761 (834)
.+.|+.||.... +..+.++. .....++++++|.++++-. ++.|++||+.++ . +..+
T Consensus 287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G---~-v~~~ 360 (409)
T 3hrp_A 287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG---Y-VSTV 360 (409)
T ss_dssp TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT---E-EEEE
T ss_pred CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC---E-EEEE
Confidence 689999998754 22333322 4578999999999777654 569999998766 2 2333
Q ss_pred ecC---------------CCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 762 SCT---------------GNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 762 ~~~---------------~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
..+ -.....+++++++..+++-..++.|+.+++
T Consensus 361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 322 245788999999765555556668887765
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.5e-12 Score=138.30 Aligned_cols=261 Identities=9% Similarity=-0.012 Sum_probs=171.5
Q ss_pred CCeEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCeEEEEe-------ccCCCCeEEEEECCCCCEEEEEeC-----CCeE
Q 003279 553 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPSLSRLATSSA-----DRTV 618 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs--~Dg~I~IWd~~t~~~~~~l-------~~h~~~I~~l~fspdg~~Latgs~-----Dg~I 618 (834)
..+..++++++|+++++.. .++.++||.+.+++.. .+ ..|-..+.+++|+++++++++-.. +..|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6789999999999988864 2343555555455433 22 234567999999999876665443 5789
Q ss_pred EEEecCCCCceeeeecc------CCCCeEEEEEccCCCcEEEEEe---CCCcEEEEECCCCceeeEeecCCCe--eEEEE
Q 003279 619 RVWDTENPDYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGSCAGVFKCQSGA--TQMRF 687 (834)
Q Consensus 619 ~IWDl~s~~~~i~~~~~------h~~~V~sl~fspdg~~llasgs---~Dg~I~lwDl~s~~~i~~~~~~~~i--~~l~~ 687 (834)
.+||+.+++. +..+.. +...+..+++++++..++++.. .++.|.+||+.+++....+..+... ....+
T Consensus 96 ~~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 96 VAWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 9999987653 333321 2345789999987666666665 6789999999988876655321111 01344
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CC-eEEEEEcCC---CCC--ceeEE-
Q 003279 688 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGS---GSK--GECIH- 759 (834)
Q Consensus 688 sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg-~I~IwDl~s---~~~--~~~i~- 759 (834)
.+++..+.+...++.+..|. ..+..|+|+|+++.|+++. ++ .|..++... +.. .....
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK 240 (343)
T ss_dssp EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence 45665566666666665442 2467899999999888877 44 666665421 100 00000
Q ss_pred -EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEecc--CCCCeEEEEEeCCCCEEEEEecCCc
Q 003279 760 -ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDKC 829 (834)
Q Consensus 760 -~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~--h~~~V~~lafspdg~~LaSgs~DG~ 829 (834)
....+......++++++|..+++...++.|.+||..+++...+.. +...+.+++|.+++.++++.+..+.
T Consensus 241 ~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~ 313 (343)
T 2qe8_A 241 IERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHH 313 (343)
T ss_dssp CEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGG
T ss_pred eEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccc
Confidence 111223355678999999877777778899999996666544332 2456899999999988888765443
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=4.1e-10 Score=122.47 Aligned_cols=220 Identities=15% Similarity=0.095 Sum_probs=154.0
Q ss_pred eEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeee
Q 003279 555 VESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 633 (834)
Q Consensus 555 V~sl~fSpdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~ 633 (834)
..+++|+|++. ++++...++.|.+||..+++... +. ....|.+++|+++++++++. .+ .|.+||..++... .+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~--~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLT--LH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEE--EE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEE--EE
Confidence 56789999754 55666678899999998876543 32 34679999999999877754 44 4999999876532 22
Q ss_pred cc-----CCCCeEEEEEccCCCcEEEEEeC------CCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc-CC
Q 003279 634 TG-----HSTTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN 701 (834)
Q Consensus 634 ~~-----h~~~V~sl~fspdg~~llasgs~------Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg 701 (834)
.. ....+.+++++|+|. ++++... .+.|..++ +++.............++|+|+++.++++.. ++
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred eeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 21 124688999999987 4434332 24566666 4554443333345778999999988776654 68
Q ss_pred eEEEEECC--CC-e-----EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003279 702 YISILDVE--TQ-V-----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 772 (834)
Q Consensus 702 ~I~iwDl~--t~-~-----~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sva 772 (834)
.|.+||+. ++ . ....+......+.+++++++|.++++.. ++.|.+||. ++ +.+..+......+.+++
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g---~~~~~i~~~~~~~~~~a 277 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG---NHIARYEVPGKQTTCPA 277 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC---CEEEEEECSCSBEEEEE
T ss_pred EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CC---CEEEEEECCCCCcEEEE
Confidence 99999986 55 2 2333333445678999999999877776 688999998 34 45556666666799999
Q ss_pred Ee-CCCCEEEEEEcCC
Q 003279 773 FH-PTFPSLLVIGCYE 787 (834)
Q Consensus 773 fs-pdg~~L~sgs~dg 787 (834)
|+ +++..|++++..+
T Consensus 278 f~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 278 FIGPDASRLLVTSARE 293 (326)
T ss_dssp EESTTSCEEEEEEBCT
T ss_pred EecCCCCEEEEEecCC
Confidence 98 8888887766543
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.6e-11 Score=134.62 Aligned_cols=237 Identities=13% Similarity=0.170 Sum_probs=170.3
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeccC-------CCCeEEEEECCCCCEEEEEeC--CCe
Q 003279 557 SCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLSRLATSSA--DRT 617 (834)
Q Consensus 557 sl~fSpdg~~Lasgs----------~Dg~I~IWd~~t~~~~~~l~~h-------~~~I~~l~fspdg~~Latgs~--Dg~ 617 (834)
.+.++|||++|+++. .++.|.++|..+++.+..+.-. ......++|+||+++|+++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 799999999888876 3678999999999998877532 234568899999999999875 578
Q ss_pred EEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeE----eecCC-C-eeEEEEecCC
Q 003279 618 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKCQS-G-ATQMRFQPRL 691 (834)
Q Consensus 618 I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~----~~~~~-~-i~~l~~sp~g 691 (834)
|.++|+.+.+. +..+.-.. +....|++...+++.+.||.+.+.++.+++.... +.... . ...+.|.+++
T Consensus 202 VsVID~~t~kv-v~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg 276 (426)
T 3c75_H 202 VGVVDLEGKTF-DRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS 276 (426)
T ss_dssp EEEEETTTTEE-EEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT
T ss_pred EEEEECCCCeE-EEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC
Confidence 99999998664 44443211 1344566666777777899999899866665532 22111 1 1245678999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEE--EEeC----------CCCCEEEEEEcCCCCEEEEEe-----------CCeEEEEE
Q 003279 692 GRILAAAIENYISILDVETQVCRL--KLQG----------HKNQVHSVCWNTSGEYLASVS-----------DELVRVWS 748 (834)
Q Consensus 692 ~~ll~~s~dg~I~iwDl~t~~~~~--~l~~----------h~~~I~sl~~spdg~~Lasgs-----------Dg~I~IwD 748 (834)
..++.....+.|.++|+....... .+.- .......+++++++..+++.. ++.|.++|
T Consensus 277 ~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID 356 (426)
T 3c75_H 277 GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLN 356 (426)
T ss_dssp CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEE
Confidence 998888888999999997654321 1110 011112368999988777654 24799999
Q ss_pred cCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCeEEEe
Q 003279 749 IGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTL 802 (834)
Q Consensus 749 l~s~~~~~~i~~~~~~~~~I~svafspdg~-~L~sgs-~dg~I~Iwdl~~~~~~~l 802 (834)
+.+. +.+..+... .....++|+|+++ .+++.. .++.|.++|+.+++++..
T Consensus 357 ~~T~---kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 357 AETG---ERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRS 408 (426)
T ss_dssp TTTC---CEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CCCC---eEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence 9998 556555432 3578899999999 888888 488999999999998844
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.2e-11 Score=126.87 Aligned_cols=236 Identities=6% Similarity=-0.005 Sum_probs=160.6
Q ss_pred EEEEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEE
Q 003279 586 VKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 664 (834)
Q Consensus 586 ~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~l 664 (834)
.+..+..........+|+++++ ++++...++.|..|+.. +. ...+..+...+..+++++++. ++++...++.|.+
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~--~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT--VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITR 111 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC--EEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEE
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC--EEEEeCCCCccceeeECCCCC-EEEEECCCCEEEE
Confidence 3344445566788999999998 56666778999999984 33 345555667899999999987 5545445678999
Q ss_pred EECCCCceeeEeec-----CCCeeEEEEecCCCEEEE----EEc-------------CCeEEEEECCCCeEEEEEeCCCC
Q 003279 665 WSINNGSCAGVFKC-----QSGATQMRFQPRLGRILA----AAI-------------ENYISILDVETQVCRLKLQGHKN 722 (834)
Q Consensus 665 wDl~s~~~i~~~~~-----~~~i~~l~~sp~g~~ll~----~s~-------------dg~I~iwDl~t~~~~~~l~~h~~ 722 (834)
|+.. ++....... ...+..++++++|..+++ +.. .+.|+.||..+++..... ...
T Consensus 112 ~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~ 188 (305)
T 3dr2_A 112 SDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD 188 (305)
T ss_dssp ECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES
T ss_pred ECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC
Confidence 9986 554332221 134678999999887765 221 257888888766544332 334
Q ss_pred CEEEEEEcCCCCEEEEEe-C------CeEEEEEcCCCCCceeEEEe-ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 723 QVHSVCWNTSGEYLASVS-D------ELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 723 ~I~sl~~spdg~~Lasgs-D------g~I~IwDl~s~~~~~~i~~~-~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
....++|+||++.|+++. . +.|++|++.... ......+ .........++++++|+ |++++. +.|.+|+.
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~-~gv~~~~~ 265 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW-LWSSSG-TGVCVFDS 265 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC-EEECCS-SEEEEECT
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC-EEEecC-CcEEEECC
Confidence 678899999999777766 4 689999987642 1111111 11234456789999998 555554 45999998
Q ss_pred CCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 795 TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 795 ~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
.......+..+. .+.+++|+++++.|+.++.++..++
T Consensus 266 ~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 266 DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 544433444443 6899999999998888888776554
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=7.4e-10 Score=120.40 Aligned_cols=221 Identities=9% Similarity=0.014 Sum_probs=150.4
Q ss_pred CeEEEEECCCC-CEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceee
Q 003279 596 WITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 674 (834)
Q Consensus 596 ~I~~l~fspdg-~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~ 674 (834)
...+++|++++ .++++...++.|.+||..++.. ..+. ....+.+++|++++. +++++ . ..|.+||..+++...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~~-~~~~v~~i~~~~dg~-l~v~~-~-~gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK--TVHA-LPFMGSALAKISDSK-QLIAS-D-DGLFLRDTATGVLTL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--EEEE-CSSCEEEEEEEETTE-EEEEE-T-TEEEEEETTTCCEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE--EEEE-CCCcceEEEEeCCCe-EEEEE-C-CCEEEEECCCCcEEE
Confidence 35678899974 4556666788999999987543 2232 346799999999976 44343 3 459999998887654
Q ss_pred EeecC-----CCeeEEEEecCCCEEEEEEc------CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--C
Q 003279 675 VFKCQ-----SGATQMRFQPRLGRILAAAI------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D 741 (834)
Q Consensus 675 ~~~~~-----~~i~~l~~sp~g~~ll~~s~------dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--D 741 (834)
..... ..+..++++++++.+++... .+.|+.+| +++... +..+......++|+|+++.|+.+. +
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~ 200 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKV 200 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCC
Confidence 33321 24788999999886655432 25677777 454433 222334578999999998776655 6
Q ss_pred CeEEEEEcC--CC-CC--ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEe
Q 003279 742 ELVRVWSIG--SG-SK--GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS 815 (834)
Q Consensus 742 g~I~IwDl~--s~-~~--~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafs 815 (834)
+.|.+||+. ++ .. ...+..+......+..++++++|.++++...++.|.+||.. ++.+ .+..+...+++++|+
T Consensus 201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAFI 279 (326)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEEE
T ss_pred CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEEECCCCCcEEEEEe
Confidence 799999986 44 21 12233333334567889999999866666567899999984 5444 555566679999999
Q ss_pred -CCCCEEEEEec
Q 003279 816 -TVNGMVASASH 826 (834)
Q Consensus 816 -pdg~~LaSgs~ 826 (834)
++++.|+.++.
T Consensus 280 g~d~~~L~vt~~ 291 (326)
T 2ghs_A 280 GPDASRLLVTSA 291 (326)
T ss_dssp STTSCEEEEEEB
T ss_pred cCCCCEEEEEec
Confidence 88876655443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-10 Score=125.60 Aligned_cols=233 Identities=11% Similarity=0.117 Sum_probs=161.3
Q ss_pred EecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC
Q 003279 547 LIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 625 (834)
Q Consensus 547 ~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s 625 (834)
.+..+........|+++|+ +++++..++.|..|+. +++ ...+..+...+..++++++++++++...++.|.+|+.+
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~- 115 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD- 115 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence 3344555678899999998 5667777899999997 444 34555567789999999999977666666889999986
Q ss_pred CCceeeeeccC-----CCCeEEEEEccCCCcEEEE----EeC-------------CCcEEEEECCCCceeeEeecCCCee
Q 003279 626 PDYSLRTFTGH-----STTVMSLDFHPSKEDLLCS----CDN-------------NSEIRYWSINNGSCAGVFKCQSGAT 683 (834)
Q Consensus 626 ~~~~i~~~~~h-----~~~V~sl~fspdg~~llas----gs~-------------Dg~I~lwDl~s~~~i~~~~~~~~i~ 683 (834)
+.. ..+..+ ...+.+++++++|. ++++ +.. .+.|+.||..+++..... ......
T Consensus 116 g~~--~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~ 191 (305)
T 3dr2_A 116 GQA--HLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPN 191 (305)
T ss_dssp SCE--EEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEE
T ss_pred CCE--EEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCc
Confidence 332 222111 23567899999987 5544 221 256888888777655544 445677
Q ss_pred EEEEecCCCEEEEEEcC------CeEEEEECCCCeE--EEEE-eCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCC
Q 003279 684 QMRFQPRLGRILAAAIE------NYISILDVETQVC--RLKL-QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK 754 (834)
Q Consensus 684 ~l~~sp~g~~ll~~s~d------g~I~iwDl~t~~~--~~~l-~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~ 754 (834)
.++|+|+++.|+++... +.|.+||+..+.. ...+ ......+..++++++|++.++. .+.|.+|+.. +
T Consensus 192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~-g-- 267 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD-G-- 267 (305)
T ss_dssp EEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSEEEEECTT-S--
T ss_pred ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCcEEEECCC-C--
Confidence 89999999988888775 7899999876531 1111 1123445678999999965554 4459999974 3
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003279 755 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 793 (834)
Q Consensus 755 ~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwd 793 (834)
+.+..+.... .+.+++|.++++.|++++.++ |+.++
T Consensus 268 -~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 268 -QLLGHIPTPG-TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp -CEEEEEECSS-CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred -CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 4455555444 588899999999888888764 44444
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-11 Score=136.39 Aligned_cols=172 Identities=14% Similarity=0.122 Sum_probs=138.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-----------EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~-----------~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
.++.+++++...+|++|+.+ .++||++++.+ ....+ .+.. |+.++| |+.+|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 58999999999999999987 56669865433 11222 3566 999999 89999999 889999999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCe
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 702 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~ 702 (834)
+.+... ......|...|.++.+.+.. +++++.||.|.+||+.++.... ....|.|++|+|+| ++++..||.
T Consensus 113 v~sl~~-~~~~~~~~~~v~~i~~~~p~---~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~ 183 (388)
T 1xip_A 113 LEELSE-FRTVTSFEKPVFQLKNVNNT---LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRS 183 (388)
T ss_dssp SSSTTC-EEEEEECSSCEEEEEECSSE---EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSC
T ss_pred chhhhc-cCccceeecceeeEEecCCC---EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCc
Confidence 987553 44556677888888877542 6678889999999999887654 34689999999998 788999999
Q ss_pred EEEEECCCCeE--EEEE------e---CCCCCEEEEEEcCCCCEEEEEe
Q 003279 703 ISILDVETQVC--RLKL------Q---GHKNQVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 703 I~iwDl~t~~~--~~~l------~---~h~~~I~sl~~spdg~~Lasgs 740 (834)
|++|+...+.. ..++ . +|...|.+|+|.+++.++++-.
T Consensus 184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99999988875 5566 3 3778999999999999998754
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-11 Score=135.68 Aligned_cols=254 Identities=11% Similarity=0.051 Sum_probs=173.0
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeccC-------CCCeEEEEECCCCC
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLS 607 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs----------~Dg~I~IWd~~t~~~~~~l~~h-------~~~I~~l~fspdg~ 607 (834)
+..+..-..+ .+.|+|||++|+++. .++.|.+||..+++.+.++..+ ......++|+|||+
T Consensus 59 ~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk 136 (368)
T 1mda_H 59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA 136 (368)
T ss_dssp EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS
T ss_pred EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCC
Confidence 3444433345 799999999998886 3688999999999999988643 12456899999999
Q ss_pred EEEEEeC--CCeEEE--EecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-----Cceee----
Q 003279 608 RLATSSA--DRTVRV--WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSCAG---- 674 (834)
Q Consensus 608 ~Latgs~--Dg~I~I--WDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s-----~~~i~---- 674 (834)
+|+++.. +..|.+ +|+.+ +..+... + |+.+.|++...+++.+.|+.+.+.|+.+ ++...
T Consensus 137 ~lyVan~~~~~~v~V~~iD~~t----v~~i~v~-~---~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~ 208 (368)
T 1mda_H 137 CLLFFLFGSSAAAGLSVPGASD----DQLTKSA-S---CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTG 208 (368)
T ss_dssp CEEEEECSSSCEEEEEETTTEE----EEEEECS-S---CCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCT
T ss_pred EEEEEccCCCCeEEEEEEchhh----ceEEECC-C---ceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeee
Confidence 9999875 457888 88876 2333211 1 1234566777777777899999999986 44331
Q ss_pred EeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC--eEEEEEeCC----------CCCEEEEEEcCCCCEEEEEe--
Q 003279 675 VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ--VCRLKLQGH----------KNQVHSVCWNTSGEYLASVS-- 740 (834)
Q Consensus 675 ~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~--~~~~~l~~h----------~~~I~sl~~spdg~~Lasgs-- 740 (834)
.+....... . .++++.++..+. +.|.+.|+... +.+..+.-. ......++|+++++.++++.
T Consensus 209 ~i~vg~~P~--~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~ 284 (368)
T 1mda_H 209 AQNCSSQAA--Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE 284 (368)
T ss_dssp TSCBCSCCE--E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred eeeCCCCcc--c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEecc
Confidence 121211122 3 777788777777 99999999754 222222110 01112268999998877643
Q ss_pred C--------CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE-E-cCCeEEEEECCCCeEEEeccCCCCeE
Q 003279 741 D--------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI-G-CYETLELWNMTENKTLTLSAHDKLVS 810 (834)
Q Consensus 741 D--------g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sg-s-~dg~I~Iwdl~~~~~~~l~~h~~~V~ 810 (834)
. +.+.++|+.+. +.+..+.... ....++|+||++.++++ . .++.|.++|+.+++.+....-.....
T Consensus 285 ~~~~~~~~~~~~~ViD~~t~---~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~ 360 (368)
T 1mda_H 285 HSRSCLAAAENTSSVTASVG---QTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPE 360 (368)
T ss_dssp CSSCTTSCEEEEEEEESSSC---CEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCC
T ss_pred ccCcccccCCCEEEEECCCC---eEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCC
Confidence 2 35779999998 4555554332 58899999999855544 4 48999999999999996655556666
Q ss_pred EEEEeC
Q 003279 811 SLAAST 816 (834)
Q Consensus 811 ~lafsp 816 (834)
.+++.+
T Consensus 361 ~i~~~~ 366 (368)
T 1mda_H 361 SLSVQN 366 (368)
T ss_dssp EEECCC
T ss_pred EEEeec
Confidence 777654
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.31 E-value=5e-09 Score=115.58 Aligned_cols=255 Identities=13% Similarity=0.081 Sum_probs=165.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCe--
Q 003279 563 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-- 640 (834)
Q Consensus 563 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V-- 640 (834)
++..|++++.++.|..+|.++++.+................ +..+++++.++.|..+|..+++.... +.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~-~~~~~~~~~~ 178 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWT-VNLDMPSLSL 178 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEE-EECCC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEE-EeCCCCceee
Confidence 45578888899999999999999887765443322222222 45788888999999999988775332 22211110
Q ss_pred ---EEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCee-----E---EEEec--CCCEEEEEEcCCeEEEEE
Q 003279 641 ---MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-----Q---MRFQP--RLGRILAAAIENYISILD 707 (834)
Q Consensus 641 ---~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~-----~---l~~sp--~g~~ll~~s~dg~I~iwD 707 (834)
...... + . .++.+..++.|..+|..+++.+..+....... . +...| .++.+++++.++.|..+|
T Consensus 179 ~~~~~~~~~-~-~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d 255 (376)
T 3q7m_A 179 RGESAPTTA-F-G-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD 255 (376)
T ss_dssp CCCCCCEEE-T-T-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred cCCCCcEEE-C-C-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence 122222 2 3 45577789999999999999888776432100 0 00111 257788888899999999
Q ss_pred CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEc
Q 003279 708 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGC 785 (834)
Q Consensus 708 l~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-~~~~I~svafspdg~~L~sgs~ 785 (834)
.++++.+..... ....++... +..|++++ ++.|..+|..++ +.+..... ....+....+. +..|++++.
T Consensus 256 ~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~ 326 (376)
T 3q7m_A 256 LRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQNDRVMALTIDGG---VTLWTQSDLLHRLLTSPVLY--NGNLVVGDS 326 (376)
T ss_dssp TTTCCEEEEECC--CCEEEEEEE--TTEEEEEETTCCEEEEETTTC---CEEEEECTTTTSCCCCCEEE--TTEEEEECT
T ss_pred CCCCcEEeeccC--CCCCCceEE--CCEEEEEcCCCeEEEEECCCC---cEEEeecccCCCcccCCEEE--CCEEEEEeC
Confidence 999988877652 334455443 44555555 889999999988 44444431 12222233332 467899999
Q ss_pred CCeEEEEECCCCeEEE-eccCCCCeEE-EEEeCCCCEEEEEecCCcEEEeC
Q 003279 786 YETLELWNMTENKTLT-LSAHDKLVSS-LAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 786 dg~I~Iwdl~~~~~~~-l~~h~~~V~~-lafspdg~~LaSgs~DG~I~IWd 834 (834)
++.|+++|..+++.+. .......+.. .... +..|+.++.||.|+.||
T Consensus 327 ~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~--~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 327 EGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA--DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCTTCBCSCCEEE--TTEEEEEBTTSCEEEEE
T ss_pred CCeEEEEECCCCcEEEEEecCCCcceeCCEEE--CCEEEEEeCCCEEEEEe
Confidence 9999999999999873 3332333322 2222 55788889999999885
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.26 E-value=3e-10 Score=122.13 Aligned_cols=258 Identities=10% Similarity=0.007 Sum_probs=171.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeee
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 633 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~ 633 (834)
.+.++.+.++|. |.+++.+ |..||. +++.+..+......+....+. +..|+.++.++.|..+|.. +.. ...+
T Consensus 61 ~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~-~~~~ 132 (330)
T 3hxj_A 61 IECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTE-KWRF 132 (330)
T ss_dssp EEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCE-EEEE
T ss_pred cccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCE-EEEE
Confidence 356777777775 4455544 888885 555443333222223333333 5567888889999999988 553 3344
Q ss_pred ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003279 634 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQV 712 (834)
Q Consensus 634 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~-~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~ 712 (834)
..+...+.++...+++. ++.++.++.|..||.. ++....+... ..+.++.+.+++. +++++ +.|..|| .+++
T Consensus 133 ~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~ 205 (330)
T 3hxj_A 133 KTKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGT 205 (330)
T ss_dssp ECSSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSC
T ss_pred cCCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCc
Confidence 44455566777776665 4457778999999999 8777666643 3456666766665 44444 8999999 7777
Q ss_pred EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003279 713 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 792 (834)
Q Consensus 713 ~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iw 792 (834)
....+......+.++..+++|.+++++.++.|..+|. ++ ..+..+......+..+.+.+++ .|++++.++.|..+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g---~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~ 280 (330)
T 3hxj_A 206 EKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DG---TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAI 280 (330)
T ss_dssp EEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TS---CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEE
T ss_pred EEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CC---CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEE
Confidence 7777766666788899998888777666888888874 33 3444444444444455666566 47888888899999
Q ss_pred ECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 793 NMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 793 dl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
|. +++.+ ........+.++...+++. |..++.+|.+++.
T Consensus 281 d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 281 NP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYAL 320 (330)
T ss_dssp CT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred CC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEE
Confidence 96 55554 4444456677888877776 4557889988764
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-13 Score=154.05 Aligned_cols=223 Identities=14% Similarity=0.055 Sum_probs=121.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCC-CeE
Q 003279 563 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVM 641 (834)
Q Consensus 563 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~-~V~ 641 (834)
++..|++++.|+.|+.||..+++.+..+.. +.+.+..+..++..+++++.|+.|+.||..+++. +..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~-~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG-LTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC-SEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce-eeeeeccCccccc
Confidence 577899999999999999999999988875 5566666667787888888999999999987664 222222211 110
Q ss_pred -EEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC
Q 003279 642 -SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH 720 (834)
Q Consensus 642 -sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h 720 (834)
+..+. .+. .+++++.|+.|+.||..+|+.+..+..... ..++|+++.+++++.++.|+.||.++++.+..+..+
T Consensus 85 ~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 159 (369)
T 2hz6_A 85 ASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF 159 (369)
T ss_dssp TCSCC-------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE
T ss_pred cCceEe-cCC-EEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc
Confidence 01111 223 456777899999999999999887765432 345668889999999999999999998766554421
Q ss_pred CCCEEEEEEcCC----CCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE--EEcCCeEEEEEC
Q 003279 721 KNQVHSVCWNTS----GEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV--IGCYETLELWNM 794 (834)
Q Consensus 721 ~~~I~sl~~spd----g~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~s--gs~dg~I~Iwdl 794 (834)
. ....+++.+ +.+++++.|+.|+.||..++ +.+..+......+...++++++...+. ...++.++.+|.
T Consensus 160 ~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG---~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~ 234 (369)
T 2hz6_A 160 D--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG---DVLWIQNYASPVVAFYVWQREGLRKVMHINVAVETLRYLTF 234 (369)
T ss_dssp E--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC---CEEEEEECSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHH
T ss_pred c--ccCccccCCccccceEEEECCCCEEEEEECCCC---cEEEEecCCCceEEEEEecCCceEeccceeecccceeeeeh
Confidence 1 122333333 44444444999999999988 455555433333333455556642210 111335566666
Q ss_pred CCCe
Q 003279 795 TENK 798 (834)
Q Consensus 795 ~~~~ 798 (834)
.+++
T Consensus 235 ~tG~ 238 (369)
T 2hz6_A 235 MSGE 238 (369)
T ss_dssp HHHH
T ss_pred hcCC
Confidence 5554
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-09 Score=129.87 Aligned_cols=263 Identities=12% Similarity=0.091 Sum_probs=180.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCC-----------eEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeee
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----------ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~-----------I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~ 632 (834)
+..|++++.++.|+.+|..+++.+..+...... ...+++ ++..|++++.|+.|..+|..+++.....
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 457777888899999999999999877543211 112333 4568888999999999999998764333
Q ss_pred eccC-C----CCeEE-EEEccCCCcEEEEEe-----CCCcEEEEECCCCceeeEeecCCCe-------------------
Q 003279 633 FTGH-S----TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSGA------------------- 682 (834)
Q Consensus 633 ~~~h-~----~~V~s-l~fspdg~~llasgs-----~Dg~I~lwDl~s~~~i~~~~~~~~i------------------- 682 (834)
..+ . ..+.+ ..+. +..+++.++ .++.|+.||..+|+.+..+......
T Consensus 155 -~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 155 -NTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp -ETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred -cCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 322 1 11211 1111 233443332 2689999999999999887652211
Q ss_pred --------------eEEEEecCCCEEEEEEcCC-------------------eEEEEECCCCeEEEEEeC--CC------
Q 003279 683 --------------TQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK------ 721 (834)
Q Consensus 683 --------------~~l~~sp~g~~ll~~s~dg-------------------~I~iwDl~t~~~~~~l~~--h~------ 721 (834)
..+.++++++.++++..++ .|..+|.++++.+..+.. |.
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~ 311 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS 311 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence 3578899999998887664 599999999999888764 21
Q ss_pred -CCEEEEEEcCCC---CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC-----------Cce-----------------
Q 003279 722 -NQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCTG-----------NKF----------------- 768 (834)
Q Consensus 722 -~~I~sl~~spdg---~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~-----------~~I----------------- 768 (834)
.....+....+| ..|+.++ +|.|+++|..+++ .+..+.... ..+
T Consensus 312 ~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~ 388 (677)
T 1kb0_A 312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK---FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG 388 (677)
T ss_dssp CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC---EeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence 112223333467 5677777 9999999999984 443332110 111
Q ss_pred -------EEEEEeCCCCEEEEEEcC-------------------------------------------CeEEEEECCCCe
Q 003279 769 -------HSCVFHPTFPSLLVIGCY-------------------------------------------ETLELWNMTENK 798 (834)
Q Consensus 769 -------~svafspdg~~L~sgs~d-------------------------------------------g~I~Iwdl~~~~ 798 (834)
..++|+|+...+++...+ +.|..||+.+++
T Consensus 389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~ 468 (677)
T 1kb0_A 389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK 468 (677)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence 156889998888876532 689999999999
Q ss_pred EEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 799 TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 799 ~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.+-...+...+....+..++.++++++.||.|++||
T Consensus 469 ~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 469 AAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred EEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence 884444555566666777888999999999999986
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-10 Score=127.97 Aligned_cols=246 Identities=11% Similarity=0.006 Sum_probs=165.1
Q ss_pred cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe----------CCCeEEEEecCCCCceeeeeccC-------C
Q 003279 575 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENPDYSLRTFTGH-------S 637 (834)
Q Consensus 575 ~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs----------~Dg~I~IWDl~s~~~~i~~~~~h-------~ 637 (834)
+|.++|..+++.+.++.....+ .+.|+||+++++++. .++.|.+||+.+.+. +..+..+ .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-v~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-IADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-EEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-EEEEECCCccccccC
Confidence 8889999999999999766666 799999999998886 368999999998775 5554322 1
Q ss_pred CCeEEEEEccCCCcEEEEEeC-CCcEEE--EECCCCceeeEeecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCC---
Q 003279 638 TTVMSLDFHPSKEDLLCSCDN-NSEIRY--WSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVET--- 710 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs~-Dg~I~l--wDl~s~~~i~~~~~~~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t--- 710 (834)
.....++|+|||++++++... +..|.+ +|+.+ +..+..... +.+.|++ ..+++.+.|+.+.+.|+++
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 346689999999987766543 467888 99877 455544322 2233443 3455566788888899987
Q ss_pred --CeEEEE----EeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecC-------C---CceEEEEEe
Q 003279 711 --QVCRLK----LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCT-------G---NKFHSCVFH 774 (834)
Q Consensus 711 --~~~~~~----l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~-------~---~~I~svafs 774 (834)
++.... +.-...+. .+..++.++++.. +.|.+.|+.+... ..+..+... . .....++|+
T Consensus 198 ~~~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~v~~s 272 (368)
T 1mda_H 198 AAGIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGA-TMKAAIDGNESGRKADNFRSAGFQMVAKL 272 (368)
T ss_dssp CCEECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCC-EEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred cCCeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcc-eEEEEEEeccccccccccccCcceeeEEc
Confidence 432211 11112333 3333444455555 8999999875321 222222110 0 111226899
Q ss_pred CCCCEEEEEEc---------CCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCC-EEEEEe-cCCcEEEeC
Q 003279 775 PTFPSLLVIGC---------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 834 (834)
Q Consensus 775 pdg~~L~sgs~---------dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~-~LaSgs-~DG~I~IWd 834 (834)
++++.++++.. ++.+.++|+.+++.+....-.....+|+|+||++ ++++.. .++.|.++|
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 99999888654 2356799999999885443344799999999998 566666 589999986
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.24 E-value=8e-10 Score=132.73 Aligned_cols=266 Identities=11% Similarity=0.096 Sum_probs=175.9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCC----------e-EEEEECCCCCEEEEEeCCCeEEEEecCCCCceeee
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------I-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~----------I-~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~ 632 (834)
+..|++++.++.|+.+|..+|+.+-.+..+... + ..+.+ ++..|++++.|+.|+.+|..+++.....
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 557778888899999999999999887543221 1 11222 3568888999999999999998864433
Q ss_pred ecc-CCCCeEEEEEcc--CCCcEEEEEe-----CCCcEEEEECCCCceeeEeecCC------------------------
Q 003279 633 FTG-HSTTVMSLDFHP--SKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQS------------------------ 680 (834)
Q Consensus 633 ~~~-h~~~V~sl~fsp--dg~~llasgs-----~Dg~I~lwDl~s~~~i~~~~~~~------------------------ 680 (834)
... +......+..+| .+..+++.++ .++.|+.||.++|+.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w 227 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY 227 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence 322 111111111111 1233443332 36899999999999988776310
Q ss_pred --------CeeEEEEecCCCEEEEEEcCC-------------------eEEEEECCCCeEEEEEeC--CC-------CCE
Q 003279 681 --------GATQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK-------NQV 724 (834)
Q Consensus 681 --------~i~~l~~sp~g~~ll~~s~dg-------------------~I~iwDl~t~~~~~~l~~--h~-------~~I 724 (834)
....+.++++.+.++++..++ .|..||.++++.+..+.. |. ..+
T Consensus 228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~ 307 (689)
T 1yiq_A 228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM 307 (689)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence 012578899889999888775 399999999999988764 22 122
Q ss_pred EEEEEcCCCC---EEEEEe-CCeEEEEEcCCCCCceeEEEeecCC-----------------------------------
Q 003279 725 HSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG----------------------------------- 765 (834)
Q Consensus 725 ~sl~~spdg~---~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~----------------------------------- 765 (834)
.......+|+ +|+.++ +|.++++|..+++ .+.......
T Consensus 308 ~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~ 384 (689)
T 1yiq_A 308 ILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE---LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPA 384 (689)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSC
T ss_pred EEEeeccCCcEEEEEEEECCCCeEEEEECCCCC---EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCC
Confidence 2222233565 677777 9999999999984 332111100
Q ss_pred ----CceEEEEEeCCCCEEEEEEc---------------------------------------------CCeEEEEECCC
Q 003279 766 ----NKFHSCVFHPTFPSLLVIGC---------------------------------------------YETLELWNMTE 796 (834)
Q Consensus 766 ----~~I~svafspdg~~L~sgs~---------------------------------------------dg~I~Iwdl~~ 796 (834)
.....++|+|+...+++... ++.|+.||+.+
T Consensus 385 ~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t 464 (689)
T 1yiq_A 385 FWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK 464 (689)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT
T ss_pred cccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC
Confidence 01123688998887777632 36799999999
Q ss_pred CeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 797 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 797 ~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
++.+-...+...+....+...+.+|++++.||.|+.||
T Consensus 465 G~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 465 QQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYA 502 (689)
T ss_dssp TEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEE
Confidence 99883333334444446667788999999999999986
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=5e-10 Score=134.70 Aligned_cols=236 Identities=13% Similarity=0.105 Sum_probs=158.6
Q ss_pred cCCCCeEEEEECCCCCEEEEEe-----CCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC-------
Q 003279 592 EHTQWITDVRFSPSLSRLATSS-----ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------- 659 (834)
Q Consensus 592 ~h~~~I~~l~fspdg~~Latgs-----~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D------- 659 (834)
+|...+..++|+|||++||.+. ....|++||+.+++.....+.. .....++|+ |++.++++...+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCccccccc
Confidence 4556788999999999988543 2357999999987742222221 123577899 988777665432
Q ss_pred -----CcEEEEECCCCce--eeEeecC----CCeeEEEEecCCCEEEEEEcC----CeEEEEECCCCe-EEEEEeCCCCC
Q 003279 660 -----SEIRYWSINNGSC--AGVFKCQ----SGATQMRFQPRLGRILAAAIE----NYISILDVETQV-CRLKLQGHKNQ 723 (834)
Q Consensus 660 -----g~I~lwDl~s~~~--i~~~~~~----~~i~~l~~sp~g~~ll~~s~d----g~I~iwDl~t~~-~~~~l~~h~~~ 723 (834)
..|++|++.++.. ...+... .....+.|+|++++|++.... +.|+++|+.++. ....+..+...
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 3499999987653 2233322 236789999999998776542 489999998763 34455556666
Q ss_pred EEEEEEcCCCCEEEEEe--C---CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECC
Q 003279 724 VHSVCWNTSGEYLASVS--D---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMT 795 (834)
Q Consensus 724 I~sl~~spdg~~Lasgs--D---g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg---~I~Iwdl~ 795 (834)
.... |+++|..|+..+ + +.|.++|+.++... ....+..+...+. .|++++.+|++...++ .|++||+.
T Consensus 283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-HWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-ccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 6555 666666555544 3 47999999876431 1234444555554 8999999888776655 79999998
Q ss_pred CCeEEEec-cCCCCeEEEEEeCCCCEEEEEecC----CcEEEeC
Q 003279 796 ENKTLTLS-AHDKLVSSLAASTVNGMVASASHD----KCVKIWK 834 (834)
Q Consensus 796 ~~~~~~l~-~h~~~V~~lafspdg~~LaSgs~D----G~I~IWd 834 (834)
++....+. ...+.+..+.+++++..|+....+ +.|+.||
T Consensus 359 g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 359 GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp SCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred CCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 77655443 345667888888888866655444 6777765
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.4e-09 Score=127.22 Aligned_cols=256 Identities=11% Similarity=0.064 Sum_probs=167.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccC--CCCeEEEEECC---CCCEEEEEe------CCCeEEEEecCCCCceeee
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSP---SLSRLATSS------ADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h--~~~I~~l~fsp---dg~~Latgs------~Dg~I~IWDl~s~~~~i~~ 632 (834)
+..|++++.|+.|+.+|.++|+.+..+... ......+..+| ++ .+++++ .++.|+.||..+++.....
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 558888999999999999999998776532 11111111122 44 444443 3789999999998864333
Q ss_pred eccC------------------------------CCCeEEEEEccCCCcEEEEEeCCC-------------------cEE
Q 003279 633 FTGH------------------------------STTVMSLDFHPSKEDLLCSCDNNS-------------------EIR 663 (834)
Q Consensus 633 ~~~h------------------------------~~~V~sl~fspdg~~llasgs~Dg-------------------~I~ 663 (834)
.... ......++++|+.. +++.+..++ .|.
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~ 278 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV 278 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 2110 01112577888765 555666565 399
Q ss_pred EEECCCCceeeEeecCC----------CeeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEEeCCC-CCE-----
Q 003279 664 YWSINNGSCAGVFKCQS----------GATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK-NQV----- 724 (834)
Q Consensus 664 lwDl~s~~~i~~~~~~~----------~i~~l~~sp~g~---~ll~~s~dg~I~iwDl~t~~~~~~l~~h~-~~I----- 724 (834)
.||.++|+.+..+.... ......+..++. .+++++.+|.|+++|.++++.+....... ...
T Consensus 279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~ 358 (689)
T 1yiq_A 279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDM 358 (689)
T ss_dssp EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEET
T ss_pred EEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCc
Confidence 99999999998887421 122222233454 67888889999999999998875443211 011
Q ss_pred ---------------------------------EEEEEcCCCCEEEEEe-------------------------------
Q 003279 725 ---------------------------------HSVCWNTSGEYLASVS------------------------------- 740 (834)
Q Consensus 725 ---------------------------------~sl~~spdg~~Lasgs------------------------------- 740 (834)
..++|+|+..++++..
T Consensus 359 ~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 438 (689)
T 1yiq_A 359 KTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGM 438 (689)
T ss_dssp TTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECC
T ss_pred cCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccc
Confidence 1268888887777652
Q ss_pred ---------------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-Eecc
Q 003279 741 ---------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA 804 (834)
Q Consensus 741 ---------------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~ 804 (834)
++.|+.||+.++ +.+..+..+. .+....+...+..+++++.|+.|+.||.++++++ .+..
T Consensus 439 ~p~~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 439 MPEGAEGLLEMAKSWSGKLIAWDPVKQ---QAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp CCSSHHHHHHHHTTCEEEEEEEETTTT---EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cCcccccCCCCCCCcceeEEEEECCCC---CeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 267999999998 5555554433 2333466667888999999999999999999998 4433
Q ss_pred C-CCCeEEEEEeCCCC-EEEEEe
Q 003279 805 H-DKLVSSLAASTVNG-MVASAS 825 (834)
Q Consensus 805 h-~~~V~~lafspdg~-~LaSgs 825 (834)
. .....-+.|..+|+ |+++.+
T Consensus 515 ~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 515 ASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp SSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCcccCceEEEECCEEEEEEEe
Confidence 2 22234467778887 444443
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.21 E-value=6e-09 Score=114.93 Aligned_cols=254 Identities=8% Similarity=0.050 Sum_probs=164.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccC---------CCCeE-EEEECCCCCEEEEEeCCCeEEEEecCCCCceeeee
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEH---------TQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 633 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h---------~~~I~-~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~ 633 (834)
+..|++++.++.|..||.++++.+..+... ...+. .+.. ++..+++++.++.|..+|..+++... .+
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W-~~ 129 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAW-QT 129 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEE-EE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEE-EE
Confidence 567888888999999999999988666442 12232 2222 45678888899999999999877533 22
Q ss_pred ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCe------eEEEEecCCCEEEEEEcCCeEEEEE
Q 003279 634 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA------TQMRFQPRLGRILAAAIENYISILD 707 (834)
Q Consensus 634 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i------~~l~~sp~g~~ll~~s~dg~I~iwD 707 (834)
............. + . .++.++.++.|..+|..+++.+..+.....+ ....+. ++.+++++.++.|..+|
T Consensus 130 ~~~~~~~~~p~~~-~-~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d 204 (376)
T 3q7m_A 130 KVAGEALSRPVVS-D-G-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVL 204 (376)
T ss_dssp ECSSCCCSCCEEE-T-T-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEE
T ss_pred eCCCceEcCCEEE-C-C-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEE
Confidence 2222211122222 2 3 5557778999999999999998887764433 122222 46788888899999999
Q ss_pred CCCCeEEEEEeCCCCC----EE---EEEEcC--CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003279 708 VETQVCRLKLQGHKNQ----VH---SVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 777 (834)
Q Consensus 708 l~t~~~~~~l~~h~~~----I~---sl~~sp--dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg 777 (834)
.++++.+......... +. .+...| .+..+++++ ++.|..+|..++ +.+..... .....+.. ++
T Consensus 205 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG---~~~w~~~~--~~~~~~~~--~~ 277 (376)
T 3q7m_A 205 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG---QIMWKREL--GSVNDFIV--DG 277 (376)
T ss_dssp TTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC---CEEEEECC--CCEEEEEE--ET
T ss_pred CCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC---cEEeeccC--CCCCCceE--EC
Confidence 9999888776532110 00 011111 234555566 889999999988 44444332 23444444 35
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEE-ec-cCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 778 PSLLVIGCYETLELWNMTENKTLT-LS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 778 ~~L~sgs~dg~I~Iwdl~~~~~~~-l~-~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
..|++++.++.|..+|..+++.+- .. .....+..+... +..|+.++.+|.|++||
T Consensus 278 ~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 278 NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWIN 334 (376)
T ss_dssp TEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEE
Confidence 678899999999999999998873 22 122233333333 56788888888888775
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.6e-09 Score=128.01 Aligned_cols=254 Identities=10% Similarity=0.042 Sum_probs=170.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEeccC-C----CCeEE-EEECCCCCEEEEEeC------CCeEEEEecCCCCcee
Q 003279 563 DGKLLATGGHDKKAVLWCTESFTVKSTLEEH-T----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSL 630 (834)
Q Consensus 563 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h-~----~~I~~-l~fspdg~~Latgs~------Dg~I~IWDl~s~~~~i 630 (834)
++..|++++.|+.|+.+|..+++.+..+..+ . ..+.+ ... .+..+++++. ++.|+.||..+++...
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 3568888999999999999999999887654 1 11211 111 2345555543 7999999999887643
Q ss_pred eeeccCC-------------------------------CCeEEEEEccCCCcEEEEEeCCC-------------------
Q 003279 631 RTFTGHS-------------------------------TTVMSLDFHPSKEDLLCSCDNNS------------------- 660 (834)
Q Consensus 631 ~~~~~h~-------------------------------~~V~sl~fspdg~~llasgs~Dg------------------- 660 (834)
+...... .....+++++++.. ++.+..++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~-vy~~~~~~~~w~~~~~~~~~gd~~~~~ 283 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNT-MYVGTGNGSPWSHKVRSPKGGDNLYLA 283 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTE-EEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCE-EEEECCCCccccCCCCCccCCCCeeeE
Confidence 3322111 11135778888664 44554443
Q ss_pred cEEEEECCCCceeeEeecCC----------CeeEEEEecCC---CEEEEEEcCCeEEEEECCCCeEEEEEeCCCC-----
Q 003279 661 EIRYWSINNGSCAGVFKCQS----------GATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQGHKN----- 722 (834)
Q Consensus 661 ~I~lwDl~s~~~i~~~~~~~----------~i~~l~~sp~g---~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~----- 722 (834)
.|..+|.++++.+..+.... ....+....+| ..+++++.+|.|+++|.++++.+..+.....
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~ 363 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence 59999999999998877421 12333344466 5788888999999999999998877653211
Q ss_pred ------CE------------------------EEEEEcCCCCEEEEEe-C------------------------------
Q 003279 723 ------QV------------------------HSVCWNTSGEYLASVS-D------------------------------ 741 (834)
Q Consensus 723 ------~I------------------------~sl~~spdg~~Lasgs-D------------------------------ 741 (834)
++ ..++|+|++.++++.. +
T Consensus 364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 443 (677)
T 1kb0_A 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA 443 (677)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence 11 1468899888877653 2
Q ss_pred -------------CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-Eec-cCC
Q 003279 742 -------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-AHD 806 (834)
Q Consensus 742 -------------g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~-~h~ 806 (834)
+.|..||+.++ +.+..+.. ...+....+...+..+++++.++.|++||..+++++ .+. .+.
T Consensus 444 ~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~ 519 (677)
T 1kb0_A 444 KFFNAEPPKSKPFGRLLAWDPVAQ---KAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG 519 (677)
T ss_dssp EEECSSCCCSCCEEEEEEEETTTT---EEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred cccccccCCCCCccEEEEEeCCCC---cEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCC
Confidence 67999999988 55555443 333445567778888999999999999999999988 333 333
Q ss_pred CCeEEEEEeCCCCEEEE
Q 003279 807 KLVSSLAASTVNGMVAS 823 (834)
Q Consensus 807 ~~V~~lafspdg~~LaS 823 (834)
....-+.|..+|+.+++
T Consensus 520 ~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 520 VVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp CCSCCEEEEETTEEEEE
T ss_pred cccCCEEEEeCCEEEEE
Confidence 33345667788874443
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.8e-08 Score=104.27 Aligned_cols=247 Identities=9% Similarity=-0.004 Sum_probs=161.2
Q ss_pred CEEEEEeCCCcEEEEeCCCCeE-----EEEeccCCCCeEEEEECCCCCEEEEE-eCCCeEEEEecCCCCceeeeeccCCC
Q 003279 565 KLLATGGHDKKAVLWCTESFTV-----KSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHST 638 (834)
Q Consensus 565 ~~Lasgs~Dg~I~IWd~~t~~~-----~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~s~~~~i~~~~~h~~ 638 (834)
.+|+.+.. +.|+.++++.... ...+......+.+++|++++..|+.+ ..++.|.++++..... ...+.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEEECCCC
Confidence 45555553 4788888775432 11222223457899999976655554 4578999999986442 222322235
Q ss_pred CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC-CCeeEEEEecCCCEEEEEEcC---CeEEEEECCCCeEE
Q 003279 639 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIE---NYISILDVETQVCR 714 (834)
Q Consensus 639 ~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~-~~i~~l~~sp~g~~ll~~s~d---g~I~iwDl~t~~~~ 714 (834)
....+++++++..++++....+.|.++++............ .....++++|+++.|+++... +.|..+++......
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~ 159 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR 159 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE
Confidence 68899999987778777777889999999754332223222 467899999987887777753 68988988643322
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEE
Q 003279 715 LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLEL 791 (834)
Q Consensus 715 ~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~-dg~I~I 791 (834)
............+++++++..|+.+. .+.|.++|+... .....+. .......+++. +..|+++.. .+.|.+
T Consensus 160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~ 233 (267)
T 1npe_A 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIA 233 (267)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC---ceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEE
Confidence 22223335678999999887776666 679999998754 2222222 23344566654 556776665 469999
Q ss_pred EECCCCeEEEec-cCC-CCeEEEEEeCCCC
Q 003279 792 WNMTENKTLTLS-AHD-KLVSSLAASTVNG 819 (834)
Q Consensus 792 wdl~~~~~~~l~-~h~-~~V~~lafspdg~ 819 (834)
+|..+++.+... ... .....+++.|++.
T Consensus 234 ~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 234 MDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EeCCCCCceEEEccccccccceeeecCccC
Confidence 999999877433 222 2478888888764
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.18 E-value=4.2e-10 Score=125.16 Aligned_cols=169 Identities=11% Similarity=0.056 Sum_probs=130.4
Q ss_pred CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-----------eeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003279 639 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-----------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD 707 (834)
Q Consensus 639 ~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~-----------~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwD 707 (834)
.+..+++++... ++++|+.+ .+++|++.... ......... |+.++| ++..|+++ .++.|++||
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999866 66677766 56669865432 223445556 999999 88888888 889999999
Q ss_pred CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003279 708 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 786 (834)
Q Consensus 708 l~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d 786 (834)
+.+.........|...+.++.+.+.. ++++. ||.|.+||+..+. ... +...|.+++|+|+| ++++..|
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~---~~~----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKS---TKQ----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCC---EEE----EEESEEEEEECSSE--EEEEETT
T ss_pred chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCc---ccc----ccCCceEEEEcCCc--eEEEEcC
Confidence 98776555666677889888877653 55555 9999999999773 222 34579999999999 7889999
Q ss_pred CeEEEEECCCCeE--E-Ee------c---cCCCCeEEEEEeCCCCEEEEE
Q 003279 787 ETLELWNMTENKT--L-TL------S---AHDKLVSSLAASTVNGMVASA 824 (834)
Q Consensus 787 g~I~Iwdl~~~~~--~-~l------~---~h~~~V~~lafspdg~~LaSg 824 (834)
|.|++|+...++. . .+ . +|...|.+|.|.+++.++++=
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 9999999988774 2 33 2 378899999999999888763
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.3e-08 Score=111.77 Aligned_cols=223 Identities=12% Similarity=0.074 Sum_probs=156.4
Q ss_pred EEc--CCCCEEEE-EeCCCcEEEEeCCCC----eEEEEec------c-CCCCeEEEEECCCCCEEEEEeCC------CeE
Q 003279 559 HFS--PDGKLLAT-GGHDKKAVLWCTESF----TVKSTLE------E-HTQWITDVRFSPSLSRLATSSAD------RTV 618 (834)
Q Consensus 559 ~fS--pdg~~Las-gs~Dg~I~IWd~~t~----~~~~~l~------~-h~~~I~~l~fspdg~~Latgs~D------g~I 618 (834)
.++ .++++|++ +..++.|+|+|+.+. +.+.+++ . ....-..+...|++ +++++..+ +.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 346 78887766 456789999999765 6667773 1 11245667888999 77776655 789
Q ss_pred EEEecCCCCceeeeeccC---CCCeEEEEEccCCCcEEEEEe-------------------CCCcEEEEECCCCceeeEe
Q 003279 619 RVWDTENPDYSLRTFTGH---STTVMSLDFHPSKEDLLCSCD-------------------NNSEIRYWSINNGSCAGVF 676 (834)
Q Consensus 619 ~IWDl~s~~~~i~~~~~h---~~~V~sl~fspdg~~llasgs-------------------~Dg~I~lwDl~s~~~i~~~ 676 (834)
.++|..+.+. +..+... ...-+.+.|+|+++.++ +.. .+..|.+||+.+++.+.++
T Consensus 167 ~vlD~~T~~v-~~~~~~~~~~~~~~Yd~~~~p~~~~mv-sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI 244 (462)
T 2ece_A 167 LMLDHYSFEP-LGKWEIDRGDQYLAYDFWWNLPNEVLV-SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL 244 (462)
T ss_dssp EEECTTTCCE-EEECCSBCTTCCCCCCEEEETTTTEEE-ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred EEEECCCCeE-EEEEccCCCCccccceEEECCCCCEEE-EccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence 9999998664 4444422 12345688899988444 553 3689999999999888888
Q ss_pred ecC---CCeeEEEE--ecCCCEEEEEEc------CCeEEEEECCCCeE--EEE--EeCC----------------CCCEE
Q 003279 677 KCQ---SGATQMRF--QPRLGRILAAAI------ENYISILDVETQVC--RLK--LQGH----------------KNQVH 725 (834)
Q Consensus 677 ~~~---~~i~~l~~--sp~g~~ll~~s~------dg~I~iwDl~t~~~--~~~--l~~h----------------~~~I~ 725 (834)
... .....+.| +|+++++++++. ++.|.+|..+.+.. ... +... ...+.
T Consensus 245 ~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 245 TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 874 23455656 999999888885 46887766554421 111 1110 23467
Q ss_pred EEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCC--------------ceEEEEEeCCCCEEEEEE
Q 003279 726 SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGN--------------KFHSCVFHPTFPSLLVIG 784 (834)
Q Consensus 726 sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~--------------~I~svafspdg~~L~sgs 784 (834)
.|.+++||++|+++. .+.|.+||+......+.+..+...+. ....+.++|||++|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 899999999999988 77999999975544466666554321 357899999999999998
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.10 E-value=7.2e-10 Score=119.15 Aligned_cols=256 Identities=10% Similarity=0.052 Sum_probs=168.5
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCC
Q 003279 558 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 637 (834)
Q Consensus 558 l~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~ 637 (834)
+.+..++ .|.+++.++.|..|| .+++.+..+..+...+.++...+++. |+.++.+ |..||. +++. +..+....
T Consensus 25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~-~~~~~~~~ 97 (330)
T 3hxj_A 25 PILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTE-KWRFDTKK 97 (330)
T ss_dssp CEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGG-GGGSCC--
T ss_pred ceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcE-EEEEECCC
Confidence 4454555 456677888999999 88888766655555667788877765 4445444 888886 3332 22222222
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC-eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003279 638 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 716 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~-i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~ 716 (834)
.......+. + . .++.++.++.|..+|.. ++....+..... +.++...+++. +++++.++.|..||.. ++.+..
T Consensus 98 ~~~~~~~~~-~-~-~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~ 171 (330)
T 3hxj_A 98 AIVSDFTIF-E-D-ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWR 171 (330)
T ss_dssp ---CCEEEE-T-T-EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEE
T ss_pred CcccCceEE-C-C-EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEE
Confidence 222333333 3 3 45567778999999998 777766664333 45566665654 7778888999999999 877777
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 717 LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 717 l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
+......+.++.+.+++.+++++ +.|..|| .++ ..+..+......+.++.+.+++. |++++.++.|..+|...
T Consensus 172 ~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g---~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g 244 (330)
T 3hxj_A 172 FKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDG---TEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG 244 (330)
T ss_dssp EECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTS---CEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS
T ss_pred EecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCC---cEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC
Confidence 76666677788888888866655 8899999 555 44445555556677888888875 77778888899998544
Q ss_pred CeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 797 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 797 ~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.....+......+.++.+.+++ .|..++.+|.|..+|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 245 TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAIN 281 (330)
T ss_dssp CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEEC
T ss_pred CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEEC
Confidence 4433444444445556666555 455667777777765
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.08 E-value=3.3e-09 Score=122.38 Aligned_cols=257 Identities=9% Similarity=0.014 Sum_probs=177.9
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEecc---------------------------------CC------CCeEEEEECC---
Q 003279 567 LATGGHDKKAVLWCTESFTVKSTLEE---------------------------------HT------QWITDVRFSP--- 604 (834)
Q Consensus 567 Lasgs~Dg~I~IWd~~t~~~~~~l~~---------------------------------h~------~~I~~l~fsp--- 604 (834)
+.+|+..|.|+|+-+.+++.+..+.. +. +.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 56788889999998888887766521 11 1122344444
Q ss_pred --CCCEEEEEeC-CCeEEEEecCCCCceeeeec-cCCCCeEEEEE-c-cCCCcEEEEE-----------------eCCCc
Q 003279 605 --SLSRLATSSA-DRTVRVWDTENPDYSLRTFT-GHSTTVMSLDF-H-PSKEDLLCSC-----------------DNNSE 661 (834)
Q Consensus 605 --dg~~Latgs~-Dg~I~IWDl~s~~~~i~~~~-~h~~~V~sl~f-s-pdg~~llasg-----------------s~Dg~ 661 (834)
||++|+.+.. +..|.+.|+.+.+. ...+. .....+..+++ + |+++++++++ ..++.
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~-~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKC-DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEE-EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceE-eeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 7788777665 55799999998653 33222 22345788887 4 8988877664 33568
Q ss_pred EEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCC--------------------------------------eE
Q 003279 662 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN--------------------------------------YI 703 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg--------------------------------------~I 703 (834)
+.++|..+.+.+..+........++++|+++++++++.+. .|
T Consensus 177 vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 9999999999999998766778899999999999998543 37
Q ss_pred EEEECCC--CeE-EEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC--------ceeEEEeecCCCceEE
Q 003279 704 SILDVET--QVC-RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK--------GECIHELSCTGNKFHS 770 (834)
Q Consensus 704 ~iwDl~t--~~~-~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~--------~~~i~~~~~~~~~I~s 770 (834)
.|.|.++ ++. +..+.. .....++.++|||+++++++ +++|.++|+.+... ...+.....-......
T Consensus 257 ~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h 335 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH 335 (595)
T ss_dssp EEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEE
T ss_pred EEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcce
Confidence 7777776 433 334432 23457899999999999988 78999999985410 0112222233556788
Q ss_pred EEEeCCCCEEEEEE-cCCeEEEEECCC----------CeEE-EeccCCCCe-----EEEEEeCCCCEEEEEec
Q 003279 771 CVFHPTFPSLLVIG-CYETLELWNMTE----------NKTL-TLSAHDKLV-----SSLAASTVNGMVASASH 826 (834)
Q Consensus 771 vafspdg~~L~sgs-~dg~I~Iwdl~~----------~~~~-~l~~h~~~V-----~~lafspdg~~LaSgs~ 826 (834)
++|+++| ++++.. -++.|.+||+.+ ...+ ++..|..+- .++.++|||++|++++.
T Consensus 336 ~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 336 TAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred EEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 9999999 665554 477999999976 4444 444443321 22355799999998863
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.07 E-value=5.6e-08 Score=108.73 Aligned_cols=222 Identities=9% Similarity=-0.030 Sum_probs=149.4
Q ss_pred EEC--CCCCEEEE-EeCCCeEEEEecCCCC---ceeeeec------c-CCCCeEEEEEccCCCcEEEEEeCC------Cc
Q 003279 601 RFS--PSLSRLAT-SSADRTVRVWDTENPD---YSLRTFT------G-HSTTVMSLDFHPSKEDLLCSCDNN------SE 661 (834)
Q Consensus 601 ~fs--pdg~~Lat-gs~Dg~I~IWDl~s~~---~~i~~~~------~-h~~~V~sl~fspdg~~llasgs~D------g~ 661 (834)
.++ .++++|+. +..+++|+|+|+.+.. ...+++. . .......+...|++ +++++..+ +.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCe
Confidence 346 77777665 4567899999997431 1223331 1 11234567788998 55566555 78
Q ss_pred EEEEECCCCceeeEeecCC----CeeEEEEecCCCEEEEEE-------------------cCCeEEEEECCCCeEEEEEe
Q 003279 662 IRYWSINNGSCAGVFKCQS----GATQMRFQPRLGRILAAA-------------------IENYISILDVETQVCRLKLQ 718 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~~~~----~i~~l~~sp~g~~ll~~s-------------------~dg~I~iwDl~t~~~~~~l~ 718 (834)
|.++|.++.+.+..+.... -...+.|+|+++.+++.. .++.|.+||+.+++.+.++.
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~ 245 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT 245 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence 9999999999999887432 234588899999888875 36899999999998888776
Q ss_pred CCC--CCEEEEEE--cCCCCEEEEEeC-------CeEEEEEcCCCCCceeEEEe--ecC----------------CCceE
Q 003279 719 GHK--NQVHSVCW--NTSGEYLASVSD-------ELVRVWSIGSGSKGECIHEL--SCT----------------GNKFH 769 (834)
Q Consensus 719 ~h~--~~I~sl~~--spdg~~LasgsD-------g~I~IwDl~s~~~~~~i~~~--~~~----------------~~~I~ 769 (834)
... .....+.| +|++++++++.. ++|.+|....+. ......+ ... .....
T Consensus 246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-EEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-eeEEEEEeCCCccccccccccccccccCCCcee
Confidence 421 23445656 999998776543 477777665431 1222221 110 24567
Q ss_pred EEEEeCCCCEEEEEEc-CCeEEEEECCC---CeEEEeccCC---------------CCeEEEEEeCCCCEEEEEe
Q 003279 770 SCVFHPTFPSLLVIGC-YETLELWNMTE---NKTLTLSAHD---------------KLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 770 svafspdg~~L~sgs~-dg~I~Iwdl~~---~~~~~l~~h~---------------~~V~~lafspdg~~LaSgs 825 (834)
.+.+++||++|+++.. .+.|.+||+.. .+.+...... +....++++|||++|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 8999999999998877 45999999863 2333221111 1368899999999999887
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.07 E-value=3e-09 Score=116.37 Aligned_cols=220 Identities=9% Similarity=0.034 Sum_probs=150.5
Q ss_pred CCeEEEEECCCCCEEEEEeC--CCeEEEEecCCCCceeeee-------ccCCCCeEEEEEccCCCcEEEEEeC-----CC
Q 003279 595 QWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTF-------TGHSTTVMSLDFHPSKEDLLCSCDN-----NS 660 (834)
Q Consensus 595 ~~I~~l~fspdg~~Latgs~--Dg~I~IWDl~s~~~~i~~~-------~~h~~~V~sl~fspdg~~llasgs~-----Dg 660 (834)
..+..|+++++++++++... ++.++||.+.++. +..+ ..+-..+.++++++++. ++++-.. +.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~--~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG--LIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE--EEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC--eecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCCC
Confidence 67899999999999888642 3435666665332 2222 23456899999999965 5444332 57
Q ss_pred cEEEEECCCCceeeEeecC-------CCeeEEEEecCCCEEEEEE----cCCeEEEEECCCCeEEEEEeCCCCCEE-EEE
Q 003279 661 EIRYWSINNGSCAGVFKCQ-------SGATQMRFQPRLGRILAAA----IENYISILDVETQVCRLKLQGHKNQVH-SVC 728 (834)
Q Consensus 661 ~I~lwDl~s~~~i~~~~~~-------~~i~~l~~sp~g~~ll~~s----~dg~I~iwDl~t~~~~~~l~~h~~~I~-sl~ 728 (834)
.|.+||+.+++.+..+... ..+..++++++++.++++. .++.|.+||+.+++....+.+|..... ...
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 8999999999877777642 2468899998766766655 468999999998887776655432111 133
Q ss_pred EcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECC---CCe-----
Q 003279 729 WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMT---ENK----- 798 (834)
Q Consensus 729 ~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg-~I~Iwdl~---~~~----- 798 (834)
+..+|..+.+.. ++.++.|. ..+..++|+|+++.|+++...+ .|+.++.. .+.
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~-----------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~ 236 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPH-----------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAE 236 (343)
T ss_dssp CEETTEECBEECTTSCEECCC-----------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHH
T ss_pred eeECCEEEEeccCCCceecee-----------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhh
Confidence 445666666555 66665552 1356799999999999888776 66666532 111
Q ss_pred ---EEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 799 ---TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 799 ---~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.+...++......++++++|.++++...++.|.+||
T Consensus 237 ~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 237 LGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp HHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred hhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEE
Confidence 012223445677899999999999988889999986
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.03 E-value=8.7e-09 Score=118.95 Aligned_cols=234 Identities=12% Similarity=0.128 Sum_probs=168.2
Q ss_pred CCCEEEEEeC-CCcEEEEeCCCCeEEEEecc-CCCCeEEEEE-C-CCCCEEEEEe------------------CCCeEEE
Q 003279 563 DGKLLATGGH-DKKAVLWCTESFTVKSTLEE-HTQWITDVRF-S-PSLSRLATSS------------------ADRTVRV 620 (834)
Q Consensus 563 dg~~Lasgs~-Dg~I~IWd~~t~~~~~~l~~-h~~~I~~l~f-s-pdg~~Latgs------------------~Dg~I~I 620 (834)
||++|++... ++.|.+.|+++.++...+.- ....+..+++ . |+++++++++ .++.|.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 8888888765 45699999999998885542 2345889998 5 8999999885 2468999
Q ss_pred EecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC-------------------------------------CcEE
Q 003279 621 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------------------------------------SEIR 663 (834)
Q Consensus 621 WDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D-------------------------------------g~I~ 663 (834)
+|.++.+.......+. ....++++|+|+.+++++... +.|.
T Consensus 180 ID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 9999765433333322 456678999988777766432 2488
Q ss_pred EEECCC--Cce-eeEeecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCe------------EEEEEeCCCCCEEEE
Q 003279 664 YWSINN--GSC-AGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQV------------CRLKLQGHKNQVHSV 727 (834)
Q Consensus 664 lwDl~s--~~~-i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~------------~~~~l~~h~~~I~sl 727 (834)
+.|..+ ++. +..+.......++.++|||+++++++. ++.|.++|+.+.+ .+..+. -......+
T Consensus 258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~ 336 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHT 336 (595)
T ss_dssp EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEE
T ss_pred EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceE
Confidence 888887 555 667777778899999999999888876 6899999999653 333433 34567899
Q ss_pred EEcCCCCEEEEEe--CCeEEEEEcCCC-------CCceeEEEeecCCCceE-----EEEEeCCCCEEEEEEcCC--eE--
Q 003279 728 CWNTSGEYLASVS--DELVRVWSIGSG-------SKGECIHELSCTGNKFH-----SCVFHPTFPSLLVIGCYE--TL-- 789 (834)
Q Consensus 728 ~~spdg~~Lasgs--Dg~I~IwDl~s~-------~~~~~i~~~~~~~~~I~-----svafspdg~~L~sgs~dg--~I-- 789 (834)
+|+++| ++++.. |+.|.+||+... +....+..+..+..+-. .+.++|||++|++...-. .+
T Consensus 337 aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~ 415 (595)
T 1fwx_A 337 AFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN 415 (595)
T ss_dssp EECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC
T ss_pred EECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccccc
Confidence 999999 666555 999999999761 11256667666654321 124589999999886532 34
Q ss_pred ---------EEEECCCCeEE
Q 003279 790 ---------ELWNMTENKTL 800 (834)
Q Consensus 790 ---------~Iwdl~~~~~~ 800 (834)
.++|+.+++..
T Consensus 416 ~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 416 VGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp CCSSCCEEEEEEECSSSSCE
T ss_pred CCCCCCCcceEEEcCCCcEE
Confidence 88999766543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=4.2e-08 Score=117.35 Aligned_cols=264 Identities=12% Similarity=0.078 Sum_probs=171.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCC----------e-EEEEECCCCCEEEEEeCCCeEEEEecCCCCceeee
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------I-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~----------I-~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~ 632 (834)
+..|++++.++.|+.+|..+++.+..+...... + ..+++ .+..|++++.|+.|..+|..+++.....
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 457777888899999999999999877543221 0 11222 3567888889999999999998864433
Q ss_pred eccCC---CCeEE-EEEccCCCcEEEEEe-----CCCcEEEEECCCCceeeEeecCC--C--------------------
Q 003279 633 FTGHS---TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQS--G-------------------- 681 (834)
Q Consensus 633 ~~~h~---~~V~s-l~fspdg~~llasgs-----~Dg~I~lwDl~s~~~i~~~~~~~--~-------------------- 681 (834)
..... ..+.+ ..+. + ..+++.++ .+|.|+.+|.++|+.+..+.... .
T Consensus 144 ~~~~~~~~~~~~~~P~v~-~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVV-K-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEEE-C-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 32211 11111 1111 2 33443332 25899999999999998876310 0
Q ss_pred ----------eeEEEEecCCCEEEEEEcCC-------------------eEEEEECCCCeEEEEEeC--CC-------CC
Q 003279 682 ----------ATQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK-------NQ 723 (834)
Q Consensus 682 ----------i~~l~~sp~g~~ll~~s~dg-------------------~I~iwDl~t~~~~~~l~~--h~-------~~ 723 (834)
...++++++.+.++++..++ .|..+|.++++.+..+.. |. .+
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 12468888888888887765 499999999999988764 22 23
Q ss_pred EEEEEEcCCCC---EEEEEe-CCeEEEEEcCCCCCceeEEEeecCC------------Cc--------------------
Q 003279 724 VHSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG------------NK-------------------- 767 (834)
Q Consensus 724 I~sl~~spdg~---~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~------------~~-------------------- 767 (834)
+....+..+|+ +|+.++ +|.++++|..+++ .+....... .+
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~ 378 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK---LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPF 378 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTT
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC---EeccccccccccccccccccCCccccccccccCCeeEECCCCc
Confidence 33333334665 566676 9999999999984 332111100 00
Q ss_pred ----eEEEEEeCCCCEEEEEE------------------------------------cCCeEEEEECCCCeEEEeccCCC
Q 003279 768 ----FHSCVFHPTFPSLLVIG------------------------------------CYETLELWNMTENKTLTLSAHDK 807 (834)
Q Consensus 768 ----I~svafspdg~~L~sgs------------------------------------~dg~I~Iwdl~~~~~~~l~~h~~ 807 (834)
...++++|+...+++.. .++.|+.||+.+++.+-...+..
T Consensus 379 G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~ 458 (668)
T 1kv9_A 379 GAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT 458 (668)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS
T ss_pred cccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC
Confidence 11267888877666522 23789999999999883333333
Q ss_pred CeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 808 LVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 808 ~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.+....+...+.+|++++.||.|++||
T Consensus 459 ~~~~~~~~t~gg~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 459 HWNGGTLSTAGNLVFQGTAAGQMHAYS 485 (668)
T ss_dssp SCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCcCceeEeCCCEEEEECCcccchhhh
Confidence 444444556788899999999999986
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=3.4e-07 Score=95.89 Aligned_cols=222 Identities=7% Similarity=0.010 Sum_probs=143.6
Q ss_pred CEEEEEeCCCeEEEEecCCCCce----eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC-CC
Q 003279 607 SRLATSSADRTVRVWDTENPDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SG 681 (834)
Q Consensus 607 ~~Latgs~Dg~I~IWDl~s~~~~----i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~-~~ 681 (834)
.+|+.+.. +.|+.++++..... ...+......+.+++|++++..++++...++.|.++++........+... ..
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34555543 47888988764321 11122223457899999987878877777889999999866544433322 46
Q ss_pred eeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C---CeEEEEEcCCCCCce
Q 003279 682 ATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D---ELVRVWSIGSGSKGE 756 (834)
Q Consensus 682 i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-D---g~I~IwDl~s~~~~~ 756 (834)
...++++++++.++++.. .+.|.++|+........+.........++++|++..|+.+. . +.|.++++..... .
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~ 159 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-R 159 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-E
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-E
Confidence 889999998777777765 57999999875433222332235678999999766655554 3 5888888864321 1
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEe-cCCcEEEeC
Q 003279 757 CIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 834 (834)
Q Consensus 757 ~i~~~~~~~~~I~svafspdg~~L~sgs~d-g~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs-~DG~I~IWd 834 (834)
.+ ..........+++++++..|+++... +.|.++|+.+.....+.........+++. +..|+.+. ..+.|.++|
T Consensus 160 ~~--~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 160 IL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp EE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EE--EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEe
Confidence 11 11233467899999998888777654 59999999876554433333445677765 44444444 456776653
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-07 Score=99.13 Aligned_cols=204 Identities=11% Similarity=0.022 Sum_probs=144.3
Q ss_pred eEEEEeccCCC--CeEEEEECCCCCEEEEEeC--CCeEEEEecCCCCceeeeec-cCCCCeEEEEEccCCCcEEEEEeCC
Q 003279 585 TVKSTLEEHTQ--WITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNN 659 (834)
Q Consensus 585 ~~~~~l~~h~~--~I~~l~fspdg~~Latgs~--Dg~I~IWDl~s~~~~i~~~~-~h~~~V~sl~fspdg~~llasgs~D 659 (834)
+.+.++. |.. ....+.|++++.++++.+. ++.|+++|+.+++. +..+. +.......+++. ++.++++.-.+
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v-~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKV-ENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCE-EEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCE-EEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 4555663 443 4689999998654444443 57999999999875 33332 222233455555 56677777788
Q ss_pred CcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC-----CCEEEEEEcCCCC
Q 003279 660 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGE 734 (834)
Q Consensus 660 g~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~-----~~I~sl~~spdg~ 734 (834)
+.+.++|..+.+.+..+... .-....++++++.++++..++.|.++|..+.+.+..+.-.. ..++.+.|. ++.
T Consensus 86 ~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ 163 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE 163 (266)
T ss_dssp SEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred CEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE
Confidence 99999999999999998765 12234466788888888878999999999988877766321 246788888 675
Q ss_pred EEEEEe-CCeEEEEEcCCCCCceeEEEeecC-------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCC
Q 003279 735 YLASVS-DELVRVWSIGSGSKGECIHELSCT-------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMTEN 797 (834)
Q Consensus 735 ~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-------------~~~I~svafspdg~~L~sgs~-dg~I~Iwdl~~~ 797 (834)
+++... ++.|.+.|..++ +.+..+... ....+.++|+|+++.+++++. .+.|++.++...
T Consensus 164 lyvn~~~~~~V~vID~~tg---~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 164 VWANIWQTDCIARISAKDG---TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTSSEEEEEETTTC---CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEecCCCCeEEEEECCCC---cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 555554 789999999998 455555432 135689999999987777664 568888887554
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.9e-06 Score=104.98 Aligned_cols=268 Identities=7% Similarity=0.015 Sum_probs=181.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-------CCCCeEEEEECCCCCEEEEEeCCCeEEEEecC
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~-------h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 624 (834)
...|.++...++|.+.+ |+.+ -|.+||..++........ ....|.++...++|. |..|+.++-|.+|+..
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI 338 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence 35699999999887554 5555 689999888766543321 235799999998886 5556677779999876
Q ss_pred CCCceeeeec-----cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee---------cCCCeeEEEEecC
Q 003279 625 NPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------CQSGATQMRFQPR 690 (834)
Q Consensus 625 s~~~~i~~~~-----~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~---------~~~~i~~l~~sp~ 690 (834)
+......... -....|.++...+++. +..|+.++-|..||..++....... ....|.+++..++
T Consensus 339 ~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~ 416 (795)
T 4a2l_A 339 RNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN--LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEK 416 (795)
T ss_dssp GGSSEEECCCTTSSSCSCSSEEEEEECTTSC--EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETT
T ss_pred cccceEEcCCCCCCCCCCCeeEEEEECCCCC--EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCC
Confidence 5443211110 1245699999888765 3357777789999988776543321 1245888888888
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEe----CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEe-----
Q 003279 691 LGRILAAAIENYISILDVETQVCRLKLQ----GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL----- 761 (834)
Q Consensus 691 g~~ll~~s~dg~I~iwDl~t~~~~~~l~----~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~----- 761 (834)
+..|.+|+.++.|.+||..+++...... .....|.++..+++|.+.+++. +.|.+||..++ ......
T Consensus 417 g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~---~~~~~~~~~~~ 492 (795)
T 4a2l_A 417 KSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQR---SFTTIEKEKDG 492 (795)
T ss_dssp TTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTT---EEEECCBCTTC
T ss_pred CCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCC---eEEEccccccc
Confidence 7757788888889999998876443321 1345799999999998777665 55889998765 222111
Q ss_pred -ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEec-------cCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 762 -SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-------AHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 762 -~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~-------~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
......|.++...++|. |.+++. +.|.+||..+++. .+. .....|.++...++|.+.++.. +| |..|
T Consensus 493 ~~~~~~~i~~i~~d~~g~-lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l~~~ 567 (795)
T 4a2l_A 493 TPVVSKQITTLFRDSHKR-LWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-FYCF 567 (795)
T ss_dssp CBCCCCCEEEEEECTTCC-EEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-EEEE
T ss_pred cccCCceEEEEEECCCCC-EEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-ceeE
Confidence 11235788999998887 555555 5688999887766 332 2345789999999888666543 35 4444
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=4e-10 Score=125.02 Aligned_cols=201 Identities=9% Similarity=-0.002 Sum_probs=110.3
Q ss_pred CCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC--e
Q 003279 605 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--A 682 (834)
Q Consensus 605 dg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~--i 682 (834)
++..|++++.|+.|+.||..+++. +..+.. +.+.+..+..++. ++++++.|+.|+.||..+++.+..+..... +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~-~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI-KWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE-EEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE-EEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 577899999999999999998875 333333 4455555555554 555777899999999999887766543211 1
Q ss_pred e-EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEE
Q 003279 683 T-QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 760 (834)
Q Consensus 683 ~-~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~ 760 (834)
. ...+ ..++.+++++.++.|+.||.++++.+..+..+. ...++|++..|++++ |+.|+.||.++++. +..
T Consensus 84 ~~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~---~W~ 155 (369)
T 2hz6_A 84 QASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTREL---RWN 155 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSC---CCE
T ss_pred ccCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCE---EEe
Confidence 0 1111 134678888889999999999999888776543 234566777777777 89999999998853 222
Q ss_pred eecCCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEE-EEEeCCCC
Q 003279 761 LSCTGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSS-LAASTVNG 819 (834)
Q Consensus 761 ~~~~~~~I~svafspdg---~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~-lafspdg~ 819 (834)
+... .....++..+. ..+++++.++.|+.||..+++.+-......++.. ..+++++.
T Consensus 156 ~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 156 ATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL 216 (369)
T ss_dssp EEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred Eecc--cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence 2111 11222334432 5688889999999999999998743334455543 34445553
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.9e-07 Score=109.52 Aligned_cols=262 Identities=10% Similarity=0.074 Sum_probs=166.7
Q ss_pred CCEEEEEeC-CCcEEEEeC-CCCeEEEEeccCCC-Ce----------EEEEECCCCCEEEEEeCCCeEEEEecCCCCcee
Q 003279 564 GKLLATGGH-DKKAVLWCT-ESFTVKSTLEEHTQ-WI----------TDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 630 (834)
Q Consensus 564 g~~Lasgs~-Dg~I~IWd~-~t~~~~~~l~~h~~-~I----------~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i 630 (834)
+..|++++. ++.|+-+|. .+++.+-.+..... .+ ..+++ ++..|++++.|+.|..+|..+++...
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 446666777 899999999 89999877643221 00 11223 35678888899999999999887644
Q ss_pred eeeccC-C--CCeEE-EEEccCCCcEEEEEeC------CCcEEEEECCCCceeeEeecCCCe------------------
Q 003279 631 RTFTGH-S--TTVMS-LDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGA------------------ 682 (834)
Q Consensus 631 ~~~~~h-~--~~V~s-l~fspdg~~llasgs~------Dg~I~lwDl~s~~~i~~~~~~~~i------------------ 682 (834)
..-... . ..+.+ .... + ..++ +++. ++.|+.+|.++++.+..+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~-~-g~v~-vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~ 216 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA-K-DTVL-MGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQ 216 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE-T-TEEE-EECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred EecCCCCCccceeccCCEEE-C-CEEE-EEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccc
Confidence 322211 0 01211 1111 2 3344 4443 789999999999999887653321
Q ss_pred ---------------------eEEEEecCCCEEEEEEcC----------------CeEEEEECCCCeEEEEEeCC--C--
Q 003279 683 ---------------------TQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQGH--K-- 721 (834)
Q Consensus 683 ---------------------~~l~~sp~g~~ll~~s~d----------------g~I~iwDl~t~~~~~~l~~h--~-- 721 (834)
..+++.++.+.++++..+ +.|..+|.++++.+..+... .
T Consensus 217 ~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~ 296 (571)
T 2ad6_A 217 FGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW 296 (571)
T ss_dssp SSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS
T ss_pred cccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccc
Confidence 235677777788777642 35999999999998887632 1
Q ss_pred ------CCEEEEEEcCCCC---EEEEEe-CCeEEEEEcCCCCCceeEEEeecCC-------------Cce----------
Q 003279 722 ------NQVHSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG-------------NKF---------- 768 (834)
Q Consensus 722 ------~~I~sl~~spdg~---~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~-------------~~I---------- 768 (834)
.++. +....+|+ +++.++ +|.++++|..+++ .+..+.... .++
T Consensus 297 d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~ 372 (571)
T 2ad6_A 297 DFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGN---LIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMD 372 (571)
T ss_dssp CCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTT
T ss_pred ccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCC---EEeeecccCCccccccccccCCceecccccCCCCC
Confidence 1221 22224674 566666 8899999999884 333332111 111
Q ss_pred ----------------EEEEEeCCCCEEEEEEc-------------------------------------CCeEEEEECC
Q 003279 769 ----------------HSCVFHPTFPSLLVIGC-------------------------------------YETLELWNMT 795 (834)
Q Consensus 769 ----------------~svafspdg~~L~sgs~-------------------------------------dg~I~Iwdl~ 795 (834)
..++++|+...|++... ++.|+.||+.
T Consensus 373 ~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~ 452 (571)
T 2ad6_A 373 HKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLT 452 (571)
T ss_dssp CCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTT
T ss_pred CCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECC
Confidence 24578888887777642 4689999999
Q ss_pred CCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 796 ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 796 ~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+++.+-...+...+....+...+.+++.++.||.|+.||
T Consensus 453 tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 453 TGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp TCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred CCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEE
Confidence 998873333333333333344566777789999999886
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2e-06 Score=104.76 Aligned_cols=266 Identities=8% Similarity=0.083 Sum_probs=179.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-------CCCCeEEEEECCCCCEEEEEeCCCeEEEEecC
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~-------h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 624 (834)
...|.++...++|.+. .|+.++-|.+||..+++....... ....|.++...+++.+.+ |+.+ -|.+||..
T Consensus 214 ~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIW-VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEE-EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCCEE-EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCC
Confidence 4679999988888654 455555599999888765543322 235699999998887554 4455 58899987
Q ss_pred CCCceeeeec--------cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-------cCCCeeEEEEec
Q 003279 625 NPDYSLRTFT--------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------CQSGATQMRFQP 689 (834)
Q Consensus 625 s~~~~i~~~~--------~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-------~~~~i~~l~~sp 689 (834)
+... ..+. -....|.++...++|. +..|+.++-|.+|+..++....... ....|.++...+
T Consensus 291 ~~~~--~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~ 366 (795)
T 4a2l_A 291 TDSF--ASYSSNPVENGSLSQRSVRSIFMDSQGG--MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK 366 (795)
T ss_dssp TTEE--EEECCCTTSTTSCSSSCEEEEEECTTSC--EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT
T ss_pred CCeE--EEEecCCCCCCCCCCCcEEEEEEeCCcC--EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC
Confidence 6543 2221 1236799999988876 3457767789999876554322211 124588888887
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEeC--------CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEE
Q 003279 690 RLGRILAAAIENYISILDVETQVCRLKLQG--------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 760 (834)
Q Consensus 690 ~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~--------h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~ 760 (834)
++. |.+|+.++.|..||..++........ ....|.+++.++++.+|.+|+ ++.|.+||..++. .. .
T Consensus 367 ~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~---~~-~ 441 (795)
T 4a2l_A 367 DKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ---VE-N 441 (795)
T ss_dssp TSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC---EE-E
T ss_pred CCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc---EE-E
Confidence 755 66788888899999987754432211 235799999999999444455 6789999988762 22 2
Q ss_pred ee-----cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEecc-------CCCCeEEEEEeCCCCEEEEEecCC
Q 003279 761 LS-----CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-------HDKLVSSLAASTVNGMVASASHDK 828 (834)
Q Consensus 761 ~~-----~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~-------h~~~V~~lafspdg~~LaSgs~DG 828 (834)
+. .....|.++...+++. |.+++. +.|.+||..+++...+.. ....|.++...++|.+.+... +|
T Consensus 442 ~~~~~~~l~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G 518 (795)
T 4a2l_A 442 FNQRNSQLVNENVYAILPDGEGN-LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG 518 (795)
T ss_dssp ECTTTSCCSCSCEEEEEECSSSC-EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC
T ss_pred eecCCCCcCCCeeEEEEECCCCC-EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-Cc
Confidence 22 2345788999888887 555555 569999998887664432 236789999999888766554 44
Q ss_pred cEEEe
Q 003279 829 CVKIW 833 (834)
Q Consensus 829 ~I~IW 833 (834)
|.+|
T Consensus 519 -l~~~ 522 (795)
T 4a2l_A 519 -LSVF 522 (795)
T ss_dssp -EEEE
T ss_pred -eEEE
Confidence 5554
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=8.9e-07 Score=95.49 Aligned_cols=234 Identities=10% Similarity=0.030 Sum_probs=146.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-c------------------CCCCeEEEEECCCCCEEEEEeC
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-E------------------HTQWITDVRFSPSLSRLATSSA 614 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~------------------h~~~I~~l~fspdg~~Latgs~ 614 (834)
...+++|+++|++++++..++.|..||..+++...... . ....+..+++.++...|+++..
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 45678899999878888889999999987655432211 0 0135789999973334555555
Q ss_pred CCeEEEEecCCCCceeeeecc-----CCCCeEEEEEcc-CCCcEEEEEeC-----------------CCcEEEEECCCCc
Q 003279 615 DRTVRVWDTENPDYSLRTFTG-----HSTTVMSLDFHP-SKEDLLCSCDN-----------------NSEIRYWSINNGS 671 (834)
Q Consensus 615 Dg~I~IWDl~s~~~~i~~~~~-----h~~~V~sl~fsp-dg~~llasgs~-----------------Dg~I~lwDl~s~~ 671 (834)
.+.|.++|..++.. ..+.. .......+++.+ +|. ++++... ++.|..||..+++
T Consensus 100 ~~~i~~~d~~~g~~--~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 100 YYHLSVVGSEGGHA--TQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp TTEEEEECTTCEEC--EEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred CCCEEEEeCCCCEE--EEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 56688888765432 22211 123578899999 875 4444321 3679999988776
Q ss_pred eeeEeecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCC---eEEEEEeCCCCCEEEEEEcCCCCEEEEEeC------
Q 003279 672 CAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVSD------ 741 (834)
Q Consensus 672 ~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~---~~~~~l~~h~~~I~sl~~spdg~~LasgsD------ 741 (834)
.............++++++++.++++.. .+.|.+||+... ... .+....+ ...++++++|.++++...
T Consensus 177 ~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~-~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~ 254 (322)
T 2fp8_A 177 TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAE-VLVKIPN-PGNIKRNADGHFWVSSSEELDGNM 254 (322)
T ss_dssp EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEE-EEEECSS-EEEEEECTTSCEEEEEEEETTSST
T ss_pred EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccc-eEEeCCC-CCCeEECCCCCEEEEecCcccccc
Confidence 5444333345678999999997777754 589999998742 211 1111223 788999999987776543
Q ss_pred -----CeEEEEEcCCCCCceeEEEeecCC----CceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCe
Q 003279 742 -----ELVRVWSIGSGSKGECIHELSCTG----NKFHSCVFHPTFPSLLVIG-CYETLELWNMTENK 798 (834)
Q Consensus 742 -----g~I~IwDl~s~~~~~~i~~~~~~~----~~I~svafspdg~~L~sgs-~dg~I~Iwdl~~~~ 798 (834)
+.|.++|.. + +.+..+.... ..+..+++. ++ .|++++ ..+.|.++++....
T Consensus 255 ~~~~~~~v~~~d~~-G---~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 255 HGRVDPKGIKFDEF-G---NILEVIPLPPPFAGEHFEQIQEH-DG-LLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp TSCEEEEEEEECTT-S---CEEEEEECCTTTTTSCCCEEEEE-TT-EEEEECSSCSEEEEEEC----
T ss_pred cCCCccEEEEECCC-C---CEEEEEECCCCCccccceEEEEe-CC-EEEEeecCCCceEEEeccccc
Confidence 467777753 3 3444444332 345666663 44 455544 56688888876543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.87 E-value=1.8e-06 Score=92.57 Aligned_cols=233 Identities=9% Similarity=0.021 Sum_probs=145.6
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEe-CCC-c
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNS-E 661 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs-~Dg-~ 661 (834)
.+.+..+... .....++|+++++++++-..++.|..||..... ...+ .....+.++++.+++. ++++.. .++ .
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~~-~~~~~p~gia~~~dG~-l~vad~~~~~~~ 96 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHA-TVEGKVSGLAFTSNGD-LVATGWNADSIP 96 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEEE-ECSSEEEEEEECTTSC-EEEEEECTTSCE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEEE-eCCCCceeEEEcCCCc-EEEEeccCCcce
Confidence 4455555433 467899999999877777688999999987532 2222 2345688999999987 444443 222 4
Q ss_pred EEEEECCCCceeeEeecC--CCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeE-EEEEe---------CCCCCEEEEE
Q 003279 662 IRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAA-IENYISILDVETQVC-RLKLQ---------GHKNQVHSVC 728 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~~~--~~i~~l~~sp~g~~ll~~s-~dg~I~iwDl~t~~~-~~~l~---------~h~~~I~sl~ 728 (834)
|..+|..+++........ .....++..++ ..++++. .++.|+++|...+.. +.... ..-.....|
T Consensus 97 v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi- 174 (306)
T 2p4o_A 97 VVSLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL- 174 (306)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred EEEEcCCCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence 777888887765444321 22344554444 4555555 478999999886532 22111 111234556
Q ss_pred EcCCCCEEEEEe--CCeEEEEEcCC-CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE---e
Q 003279 729 WNTSGEYLASVS--DELVRVWSIGS-GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT---L 802 (834)
Q Consensus 729 ~spdg~~Lasgs--Dg~I~IwDl~s-~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~---l 802 (834)
++++.+|+++. .+.|.+|++.. +.. .....+.. ......++++++|.++++....+.|.+||.. ++... +
T Consensus 175 -s~dg~~lyv~d~~~~~I~~~~~~~~g~~-~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~ 250 (306)
T 2p4o_A 175 -KRFGNFLYVSNTEKMLLLRIPVDSTDKP-GEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQA 250 (306)
T ss_dssp -EEETTEEEEEETTTTEEEEEEBCTTSCB-CCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECG
T ss_pred -CcCCCEEEEEeCCCCEEEEEEeCCCCCC-CccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeec
Confidence 78888777766 77999999975 321 11111111 1345678999999865555556799999976 55432 2
Q ss_pred ccCCCCeEEEEEe---CCCCEEEEEecC
Q 003279 803 SAHDKLVSSLAAS---TVNGMVASASHD 827 (834)
Q Consensus 803 ~~h~~~V~~lafs---pdg~~LaSgs~D 827 (834)
......+++++|. ++++.|+.++..
T Consensus 251 ~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 251 EQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ccccCCceEEEEecccCCCCEEEEECCC
Confidence 2233668999998 888777666543
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-06 Score=94.83 Aligned_cols=234 Identities=9% Similarity=0.001 Sum_probs=146.0
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeecc------------------CCCCeEEEEEccCCCcEEEEE
Q 003279 595 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG------------------HSTTVMSLDFHPSKEDLLCSC 656 (834)
Q Consensus 595 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~------------------h~~~V~sl~fspdg~~llasg 656 (834)
....+++|.+++.+++++..++.|..||..+.......... ....+.++++.+++..++ .+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~-v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY-IV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-EE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE-EE
Confidence 34578899999988888888999999998764432111100 113578899997334455 44
Q ss_pred eCCCcEEEEECCCCceeeEeec-----CCCeeEEEEec-CCCEEEEEEc-----------------CCeEEEEECCCCeE
Q 003279 657 DNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQP-RLGRILAAAI-----------------ENYISILDVETQVC 713 (834)
Q Consensus 657 s~Dg~I~lwDl~s~~~i~~~~~-----~~~i~~l~~sp-~g~~ll~~s~-----------------dg~I~iwDl~t~~~ 713 (834)
+..+.|..+|..++........ ......+++.+ ++..+++... ++.|..||..+++.
T Consensus 98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 4455588898876543222111 13467899999 8765555322 36799999887764
Q ss_pred EEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc------
Q 003279 714 RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC------ 785 (834)
Q Consensus 714 ~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~------ 785 (834)
...... ......|+|++++++|+++. .+.|.+|++....... ...+..... ...++++++|.++++...
T Consensus 178 ~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~ 254 (322)
T 2fp8_A 178 TLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNM 254 (322)
T ss_dssp EEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEEECSS-EEEEEECTTSCEEEEEEEETTSST
T ss_pred EEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEEeCCC-CCCeEECCCCCEEEEecCcccccc
Confidence 433221 23346799999999776665 6799999987532111 111111223 788999999985555444
Q ss_pred ----CCeEEEEECCCCeEE-EeccC----CCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 786 ----YETLELWNMTENKTL-TLSAH----DKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 786 ----dg~I~Iwdl~~~~~~-~l~~h----~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.+.|..+|.. ++.+ .+... ...++++++ .++.++++....+.|.+++
T Consensus 255 ~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 255 HGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILV 310 (322)
T ss_dssp TSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEE
T ss_pred cCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEe
Confidence 3578888875 4544 33322 245777776 4566666655677777653
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4e-07 Score=107.07 Aligned_cols=264 Identities=9% Similarity=0.032 Sum_probs=166.1
Q ss_pred CCEEEEEeC-CCcEEEEeC-CCCeEEEEeccCCCC-----------eEEEEECCCCCE----EEEEeCCCeEEEEecCCC
Q 003279 564 GKLLATGGH-DKKAVLWCT-ESFTVKSTLEEHTQW-----------ITDVRFSPSLSR----LATSSADRTVRVWDTENP 626 (834)
Q Consensus 564 g~~Lasgs~-Dg~I~IWd~-~t~~~~~~l~~h~~~-----------I~~l~fspdg~~----Latgs~Dg~I~IWDl~s~ 626 (834)
+..|++++. ++.|+-+|. .+++.+-.+...... ...+++.|.+.. |++++.|+.|..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 446777777 889999999 899998776533211 123455433334 888889999999999998
Q ss_pred CceeeeeccC-C--CCeEE-EEEccCCCcEEEEEe------CCCcEEEEECCCCceeeEeecCCCe--------------
Q 003279 627 DYSLRTFTGH-S--TTVMS-LDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSGA-------------- 682 (834)
Q Consensus 627 ~~~i~~~~~h-~--~~V~s-l~fspdg~~llasgs------~Dg~I~lwDl~s~~~i~~~~~~~~i-------------- 682 (834)
+.....-... . ..+.+ ..+. + ..++ +++ .++.|+.+|.++|+.+..+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~-vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~ 218 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-K-DKVI-IGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-T-TEEE-ECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CEEEeecCCCCCccceeecCCEEE-C-CEEE-EEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence 8644332211 0 01211 1111 2 3344 443 3799999999999999887754322
Q ss_pred -------------------------eEEEEecCCCEEEEEEcC----------------CeEEEEECCCCeEEEEEeCCC
Q 003279 683 -------------------------TQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQGHK 721 (834)
Q Consensus 683 -------------------------~~l~~sp~g~~ll~~s~d----------------g~I~iwDl~t~~~~~~l~~h~ 721 (834)
..+++.+..+.++++..+ +.|..+|.++++.+..+....
T Consensus 219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~ 298 (599)
T 1w6s_A 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP 298 (599)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence 135677788888888765 389999999999988876522
Q ss_pred C----------CEEEEEEc-CCC---CEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-------------CCc------
Q 003279 722 N----------QVHSVCWN-TSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCT-------------GNK------ 767 (834)
Q Consensus 722 ~----------~I~sl~~s-pdg---~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-------------~~~------ 767 (834)
. ++. +... .+| ..++.++ +|.++++|..+++ .+...... ..+
T Consensus 299 ~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~ 374 (599)
T 1w6s_A 299 HDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA---LVSANKLDDTVNVFKSVDLKTGQPVRDPEY 374 (599)
T ss_dssp TCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCCEEECGGG
T ss_pred CccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCC---EeecccccCCcccccccccCCCceeecccc
Confidence 1 122 2222 467 4566666 9999999999884 33332211 011
Q ss_pred --------------------eEEEEEeCCCCEEEEEE---------------------------------------cCCe
Q 003279 768 --------------------FHSCVFHPTFPSLLVIG---------------------------------------CYET 788 (834)
Q Consensus 768 --------------------I~svafspdg~~L~sgs---------------------------------------~dg~ 788 (834)
...++++|+...+++.. ..+.
T Consensus 375 ~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~ 454 (599)
T 1w6s_A 375 GTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQ 454 (599)
T ss_dssp CCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEE
T ss_pred CCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCe
Confidence 12456777766655532 2368
Q ss_pred EEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 789 LELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 789 I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|..||+.+++.+-...+..++..-.+...+.+|+.++.||.|+.||
T Consensus 455 l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D 500 (599)
T 1w6s_A 455 IKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARD 500 (599)
T ss_dssp EEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred EEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEE
Confidence 9999999998873222222222222233567777889999998875
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.3e-06 Score=101.68 Aligned_cols=274 Identities=8% Similarity=-0.060 Sum_probs=177.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec--------------cCCCCeEEEEECCCCCEEEEEeCCCe
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--------------EHTQWITDVRFSPSLSRLATSSADRT 617 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~--------------~h~~~I~~l~fspdg~~Latgs~Dg~ 617 (834)
...|.++...++|. |..|+..+-|.++|..+........ -....|.++...+++. |..|+.++-
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 45699999988885 5557665678899987765432211 1345799999988876 556666777
Q ss_pred EEEEecCCCCceeeee--------ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee----cCCCeeEE
Q 003279 618 VRVWDTENPDYSLRTF--------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQM 685 (834)
Q Consensus 618 I~IWDl~s~~~~i~~~--------~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~----~~~~i~~l 685 (834)
|..|+........... ......|.++...+++. |..|+.++-|.+||..++....... ....|.++
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i 412 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK--LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS 412 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC--EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEE
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC--EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE
Confidence 8999887654322111 11235689999887765 3356656679999987654332211 12457788
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEee-
Q 003279 686 RFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS- 762 (834)
Q Consensus 686 ~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~--~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~- 762 (834)
...+++. |.+++.++.|..||..+++...... .....|.++..++++.+.+++. +.|.+||..++.. ..+....
T Consensus 413 ~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~-~~~~~~~~ 489 (781)
T 3v9f_A 413 LKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKV-IHHYDTSN 489 (781)
T ss_dssp EECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSC-CEEECTTT
T ss_pred EECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeE-EecccCcc
Confidence 8776654 6667777889999998775433221 1346799999998887666554 6699999877532 1111111
Q ss_pred --cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEecc----CCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 763 --CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA----HDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 763 --~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~----h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.....|.++...++|. |.+++.++-|..||..+++...+.. ....|.++...++|.+.++. .+|.|..||
T Consensus 490 ~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d 565 (781)
T 3v9f_A 490 SQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPS 565 (781)
T ss_dssp SSCSCSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESC
T ss_pred cccccceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEEC
Confidence 1135788999998887 5666665568889988877665432 23568999998888866654 466546654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=5.8e-07 Score=94.49 Aligned_cols=186 Identities=10% Similarity=-0.000 Sum_probs=128.3
Q ss_pred CeEEEEEccCCCcEEEEEeC--CCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEE
Q 003279 639 TVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRL 715 (834)
Q Consensus 639 ~V~sl~fspdg~~llasgs~--Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~ 715 (834)
....+.|++++ .++++.+. ++.|.++|+.+++.+..+..........+..+++.++++.. ++.+.++|..+.+.+.
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~ 100 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIK 100 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEE
Confidence 46799999985 55555543 57999999999999998876554333333444667777665 6899999999999988
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC-----CceEEEEEeCCCCEEEEEE-cCCe
Q 003279 716 KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG-----NKFHSCVFHPTFPSLLVIG-CYET 788 (834)
Q Consensus 716 ~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~-----~~I~svafspdg~~L~sgs-~dg~ 788 (834)
++...... ...+++||+.++++. ++.|.++|..+. +.+..+.... ..++.+.|. ++ .|++.. .++.
T Consensus 101 ~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~---~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~ 173 (266)
T 2iwa_A 101 NFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTF---KLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDC 173 (266)
T ss_dssp EEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTC---CEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSE
T ss_pred EEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCC---cEEEEEEECCCCcccccceeEEEE-CC-EEEEecCCCCe
Confidence 88633111 233455777677666 789999999887 4444443221 236677888 66 455555 4679
Q ss_pred EEEEECCCCeEEEeccC--------------CCCeEEEEEeCCCCE-EEEEecCCcEEE
Q 003279 789 LELWNMTENKTLTLSAH--------------DKLVSSLAASTVNGM-VASASHDKCVKI 832 (834)
Q Consensus 789 I~Iwdl~~~~~~~l~~h--------------~~~V~~lafspdg~~-LaSgs~DG~I~I 832 (834)
|.+.|..+++++....- ......|+|+|+++. ++++...+.|.+
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~ 232 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE 232 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence 99999999998732211 135689999999874 555556666654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=6.4e-07 Score=107.08 Aligned_cols=255 Identities=13% Similarity=0.137 Sum_probs=160.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCC----CCeEE-EEECCCCCEEEEEeC------CCeEEEEecCCCCceeee
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~----~~I~~-l~fspdg~~Latgs~------Dg~I~IWDl~s~~~~i~~ 632 (834)
+..|++++.|+.|+.+|.++++.+..+.... ..+.+ ..+. ++ .+++++. ++.|+.||..+++.....
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 4578888899999999999999987765421 11111 1111 33 4555433 589999999988764333
Q ss_pred ecc--C----------------------------CCCeEEEEEccCCCcEEEEEeCCC-------------------cEE
Q 003279 633 FTG--H----------------------------STTVMSLDFHPSKEDLLCSCDNNS-------------------EIR 663 (834)
Q Consensus 633 ~~~--h----------------------------~~~V~sl~fspdg~~llasgs~Dg-------------------~I~ 663 (834)
... . ......+++.++.. +++.+..++ .|.
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 211 0 01112467877765 555665554 499
Q ss_pred EEECCCCceeeEeecC----------CCeeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEEeCCCC--------
Q 003279 664 YWSINNGSCAGVFKCQ----------SGATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHKN-------- 722 (834)
Q Consensus 664 lwDl~s~~~i~~~~~~----------~~i~~l~~sp~g~---~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~-------- 722 (834)
.+|.++++.+..+... .......+..+++ .+++++.+|.++++|.++++.+..+.....
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~ 353 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL 353 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccc
Confidence 9999999999888752 2223333334554 588888899999999999988754432210
Q ss_pred ----CE------------------------EEEEEcCCCCEEEEE-----------------------------------
Q 003279 723 ----QV------------------------HSVCWNTSGEYLASV----------------------------------- 739 (834)
Q Consensus 723 ----~I------------------------~sl~~spdg~~Lasg----------------------------------- 739 (834)
++ ..++++|+..++++.
T Consensus 354 ~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~ 433 (668)
T 1kv9_A 354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA 433 (668)
T ss_dssp TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred ccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCC
Confidence 00 125777776665541
Q ss_pred -e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCe-EEEEEe
Q 003279 740 -S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLV-SSLAAS 815 (834)
Q Consensus 740 -s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V-~~lafs 815 (834)
. ++.|+.||+.++ +.+...... .......+...+..+++++.|+.|++||.++++.+ .+....... .-+.+.
T Consensus 434 ~~~~g~l~A~D~~tG---~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~ 509 (668)
T 1kv9_A 434 AVVSGALLAWDPVKQ---KAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFE 509 (668)
T ss_dssp GGCEEEEEEEETTTT---EEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred CCccceEEEEeCCCC---cEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEE
Confidence 1 378999999988 555444432 22333445557788999999999999999999988 333222111 234445
Q ss_pred CCCC-EEEEEe
Q 003279 816 TVNG-MVASAS 825 (834)
Q Consensus 816 pdg~-~LaSgs 825 (834)
.+|+ +++.++
T Consensus 510 ~~G~~yva~~~ 520 (668)
T 1kv9_A 510 LAGRQYVAIMA 520 (668)
T ss_dssp ETTEEEEEEEE
T ss_pred ECCEEEEEEEe
Confidence 6676 444443
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-06 Score=90.99 Aligned_cols=192 Identities=12% Similarity=0.128 Sum_probs=135.1
Q ss_pred eEEEEeccCCC--CeEEEEECCCCCEEEEEeCCC--eEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC
Q 003279 585 TVKSTLEEHTQ--WITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 660 (834)
Q Consensus 585 ~~~~~l~~h~~--~I~~l~fspdg~~Latgs~Dg--~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg 660 (834)
+.+.++. |.. ....+.|+ ++.++.+.+.+| .|+++|+.+++. +..+.- ..........++++.+++..-.++
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv-~~~~~l-~~~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKT-LQQIEL-GKRYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCE-EEEEEC-CTTCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcE-EEEEec-CCccceeEEEEeCCEEEEEEeeCC
Confidence 3455553 443 35788998 666666777665 899999999875 333332 223333333334567777777799
Q ss_pred cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCC--C---CCEEEEEEcCCCCE
Q 003279 661 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH--K---NQVHSVCWNTSGEY 735 (834)
Q Consensus 661 ~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h--~---~~I~sl~~spdg~~ 735 (834)
.+.+||..+.+.+..+.....- ..++++++.|+++..++.|.++|..+.+.+..+.-. . ..++.+.|. +|++
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l 184 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEI 184 (262)
T ss_dssp EEEEEETTTCCEEEEEECSSCC--CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEEECccCcEEEEEECCCCc--eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEE
Confidence 9999999999999999875433 344467788888777889999999999887776542 1 345567776 6766
Q ss_pred EEEEe-CCeEEEEEcCCCCCceeEEEeecC------------CCceEEEEEeCCCCEEEEEEcC
Q 003279 736 LASVS-DELVRVWSIGSGSKGECIHELSCT------------GNKFHSCVFHPTFPSLLVIGCY 786 (834)
Q Consensus 736 Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~------------~~~I~svafspdg~~L~sgs~d 786 (834)
++... ++.|.+.|..++ +.+..+... ....+.++|+|+++.|++.+..
T Consensus 185 yan~w~~~~I~vIDp~tG---~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 185 FANVWQTNKIVRIDPETG---KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEETTSSEEEEECTTTC---BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEEEccCCeEEEEECCCC---cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 65554 789999999998 555544432 2456899999999988888765
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.76 E-value=6.9e-06 Score=87.96 Aligned_cols=237 Identities=9% Similarity=0.022 Sum_probs=146.2
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC--eEE
Q 003279 542 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVR 619 (834)
Q Consensus 542 ~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg--~I~ 619 (834)
...+..+..+ .....++|+++|+++++-..++.|..||.+.. ....+. ....+..+++.++++++++..... .|.
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~ 98 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVV 98 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence 3445555443 45789999999997777667899999997753 333332 335688999999998666554432 466
Q ss_pred EEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce-eeEe-------ec---CCCeeEEEEe
Q 003279 620 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF-------KC---QSGATQMRFQ 688 (834)
Q Consensus 620 IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~-i~~~-------~~---~~~i~~l~~s 688 (834)
.+|..++......-.........++..++ ..++++...++.|+++|...+.. +... .. -.....+ +
T Consensus 99 ~~d~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 99 SLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp EEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred EEcCCCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence 67766655321111112233445555444 44555554688999999876531 1110 00 1123444 7
Q ss_pred cCCCEEEEEEc-CCeEEEEECCC-CeE--EEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003279 689 PRLGRILAAAI-ENYISILDVET-QVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 763 (834)
Q Consensus 689 p~g~~ll~~s~-dg~I~iwDl~t-~~~--~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 763 (834)
+++++++++.. .+.|.+||+.. +.. ...+.. ......++++++|.++++.. .+.|.+||.. +.. ..+..+..
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~-~~~~~~~~ 252 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST-TIIAQAEQ 252 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE-EEEECGGG
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE-EEEeeccc
Confidence 88888877765 57999999874 321 111111 13456789999998776665 7789999865 311 11223333
Q ss_pred CCCceEEEEEe---CCCCEEEEEEcCC
Q 003279 764 TGNKFHSCVFH---PTFPSLLVIGCYE 787 (834)
Q Consensus 764 ~~~~I~svafs---pdg~~L~sgs~dg 787 (834)
......+++|. +++..|++++..+
T Consensus 253 ~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ccCCceEEEEecccCCCCEEEEECCCC
Confidence 34668999998 8988888877654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.6e-07 Score=112.17 Aligned_cols=266 Identities=9% Similarity=0.037 Sum_probs=155.5
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEeCCCCeEE--EEec-cCCCCeEEEEECCCCCEEEEEeC-CCeEEE
Q 003279 557 SCHFSP-DGKLLATGGHDK-----------KAVLWCTESFTVK--STLE-EHTQWITDVRFSPSLSRLATSSA-DRTVRV 620 (834)
Q Consensus 557 sl~fSp-dg~~Lasgs~Dg-----------~I~IWd~~t~~~~--~~l~-~h~~~I~~l~fspdg~~Latgs~-Dg~I~I 620 (834)
++++.+ ++++++.|+.+. .+.+||..+.+.. ..+. .+.....++++..+++++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 888999887643 5889998876532 2332 23344556788889999999984 458999
Q ss_pred EecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEe-CC-----CcEEEEECCCCceeeEe-----ecCCCeeEEEEec
Q 003279 621 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NN-----SEIRYWSINNGSCAGVF-----KCQSGATQMRFQP 689 (834)
Q Consensus 621 WDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs-~D-----g~I~lwDl~s~~~i~~~-----~~~~~i~~l~~sp 689 (834)
||..+..+....-......-.++++.+++. +++.|+ .+ ..+.+||..+++....- ..........+..
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 999876542211111111223455556765 555666 34 57999999887644321 1100000011223
Q ss_pred CCCEEEEEEcC---------CeEEEEECCCCeEEEEEeCCC---------CCEEEEEEcC-CCCEEEEEe-CC-------
Q 003279 690 RLGRILAAAIE---------NYISILDVETQVCRLKLQGHK---------NQVHSVCWNT-SGEYLASVS-DE------- 742 (834)
Q Consensus 690 ~g~~ll~~s~d---------g~I~iwDl~t~~~~~~l~~h~---------~~I~sl~~sp-dg~~Lasgs-Dg------- 742 (834)
++..+++++.+ ..+..||..+.........+. ..-.++.|.. +++++++|+ ++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 44444555443 457889988765433322111 1234455543 677777766 32
Q ss_pred ----eEEEEEcCCCCCceeEEEe--ecCCC-ceEEEEEeCCCCEEEEEEcC-----------CeEEEEECCCCeEEEecc
Q 003279 743 ----LVRVWSIGSGSKGECIHEL--SCTGN-KFHSCVFHPTFPSLLVIGCY-----------ETLELWNMTENKTLTLSA 804 (834)
Q Consensus 743 ----~I~IwDl~s~~~~~~i~~~--~~~~~-~I~svafspdg~~L~sgs~d-----------g~I~Iwdl~~~~~~~l~~ 804 (834)
.|.+||..+.. ..... ..... ...++++.|+++.+++++.+ ..+.+||..+++...+..
T Consensus 429 ~~~~~v~~yd~~~~~---W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~ 505 (656)
T 1k3i_A 429 TNAHIITLGEPGTSP---NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP 505 (656)
T ss_dssp CCEEEEECCSTTSCC---EEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCC
T ss_pred CcceEEEcCCCCCCC---eeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCC
Confidence 57788876652 22221 11122 23455677899988888754 468999998877654332
Q ss_pred ---CCCCeEEEEEeCCCCEEEEEec
Q 003279 805 ---HDKLVSSLAASTVNGMVASASH 826 (834)
Q Consensus 805 ---h~~~V~~lafspdg~~LaSgs~ 826 (834)
......+..+.+++++++.|+.
T Consensus 506 ~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 506 NSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCccccccHhhcCCCcEEEecCCC
Confidence 1222334556799999999985
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=4e-05 Score=82.62 Aligned_cols=228 Identities=8% Similarity=-0.039 Sum_probs=147.7
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEE-eCCCeEEEEecCCC---CceeeeeccCCCCeE
Q 003279 566 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENP---DYSLRTFTGHSTTVM 641 (834)
Q Consensus 566 ~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~s~---~~~i~~~~~h~~~V~ 641 (834)
+|+.+.. ..|+..|+.+.+....+. ....+..++|++++..|+.+ ...+.|..+++... ......+...-....
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 4444443 578999998876665554 34567899999866555544 45689999998751 221222222234568
Q ss_pred EEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcC--CeEEEEECCCCeEEEEEe
Q 003279 642 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE--NYISILDVETQVCRLKLQ 718 (834)
Q Consensus 642 sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~d--g~I~iwDl~t~~~~~~l~ 718 (834)
.+++.+.+..++++-..++.|.++|+........+. .......++++|.++.++.+... +.|..+++..........
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~ 160 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence 899987777777777778899999998554443333 23567899999988888777754 689999986443322223
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECC
Q 003279 719 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMT 795 (834)
Q Consensus 719 ~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs-~dg~I~Iwdl~ 795 (834)
..-.....|++++++..|+.+. .+.|..+|+.... ...+............+++.. ..|+.+. ..+.|..++..
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~~--~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEEEEETT
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEEC--CEEEEEECCCCeEEEEeCC
Confidence 3345688999999887777666 6699999997532 222222212234456777753 3555554 45689999876
Q ss_pred CCe
Q 003279 796 ENK 798 (834)
Q Consensus 796 ~~~ 798 (834)
+++
T Consensus 238 ~g~ 240 (316)
T 1ijq_A 238 TGS 240 (316)
T ss_dssp TCC
T ss_pred CCc
Confidence 654
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.7e-06 Score=99.78 Aligned_cols=254 Identities=9% Similarity=0.004 Sum_probs=155.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCC----CCeEE-EEECCCCCEEEEEeC------CCeEEEEecCCCCceeee
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~----~~I~~-l~fspdg~~Latgs~------Dg~I~IWDl~s~~~~i~~ 632 (834)
+..|++++.|+.|..+|..+++.+....... ..+.+ .... ++ .+++++. ++.|+.+|..+++...+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 5578888889999999999999987654221 01211 1111 33 5555554 789999999988754332
Q ss_pred eccCCC-------------------------------------CeEEEEEccCCCcEEEEEeC-----------C----C
Q 003279 633 FTGHST-------------------------------------TVMSLDFHPSKEDLLCSCDN-----------N----S 660 (834)
Q Consensus 633 ~~~h~~-------------------------------------~V~sl~fspdg~~llasgs~-----------D----g 660 (834)
...... ....+++.++...+++..+. | +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 221100 00235566665544433321 1 3
Q ss_pred cEEEEECCCCceeeEeecCC----------CeeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEEeCCC------
Q 003279 661 EIRYWSINNGSCAGVFKCQS----------GATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK------ 721 (834)
Q Consensus 661 ~I~lwDl~s~~~i~~~~~~~----------~i~~l~~sp~g~---~ll~~s~dg~I~iwDl~t~~~~~~l~~h~------ 721 (834)
.|..+|.++++.+..+.... ...-+....+++ .+++++.+|.++++|.++++.+..+....
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 59999999999998886421 111122224563 46677788999999999998887765321
Q ss_pred -------CCE--------------------------EEEEEcCCCCEEEEEe----------------------------
Q 003279 722 -------NQV--------------------------HSVCWNTSGEYLASVS---------------------------- 740 (834)
Q Consensus 722 -------~~I--------------------------~sl~~spdg~~Lasgs---------------------------- 740 (834)
.++ ..++++|+..+|++..
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 111 2357788777666543
Q ss_pred ----------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCC-CC
Q 003279 741 ----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-KL 808 (834)
Q Consensus 741 ----------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~-~~ 808 (834)
++.|..||+.++ +.+..+... ..+....+...+..+++++.|+.|+.||.++++++ .+.... ..
T Consensus 433 ~~~~~~~~~~~g~l~a~D~~tG---~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~ 508 (571)
T 2ad6_A 433 PGPNGPTKKEMGQIRAFDLTTG---KAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGI 508 (571)
T ss_dssp ECTTSTTSCCCEEEEEECTTTC---CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred cCccccCCCCCCeEEEEECCCC---CEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcE
Confidence 367889999887 444444332 22222333445667888999999999999999988 333221 11
Q ss_pred eEEEEEeCCCCEEEE
Q 003279 809 VSSLAASTVNGMVAS 823 (834)
Q Consensus 809 V~~lafspdg~~LaS 823 (834)
-.-+.+..+|+.++.
T Consensus 509 ~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 509 GSPMTYSFKGKQYIG 523 (571)
T ss_dssp SCCEEEEETTEEEEE
T ss_pred eeeEEEEECCEEEEE
Confidence 122345577775443
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-05 Score=96.98 Aligned_cols=272 Identities=10% Similarity=0.026 Sum_probs=172.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-------CCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 625 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~-------h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s 625 (834)
..|.++...++|.+ ..|+.++-|..||..+++....... ....|.++...+++.+.+. +.+ -|.+||..+
T Consensus 163 ~~i~~i~~d~~g~l-wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~ 239 (781)
T 3v9f_A 163 EQTWTATEAEDGKL-YIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIG-TSK-GLALFNANT 239 (781)
T ss_dssp CCEEEEEEEETTEE-EEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEE-ETT-EEEEEETTT
T ss_pred cceEEEEECCCCCE-EEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEE-eCC-cHheECCCC
Confidence 45889888888754 4566666799999888765432211 2356999999888876554 445 588999876
Q ss_pred CCceeeee------ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee---------------cCCCeeE
Q 003279 626 PDYSLRTF------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------------CQSGATQ 684 (834)
Q Consensus 626 ~~~~i~~~------~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~---------------~~~~i~~ 684 (834)
........ ......|.++...+++. +..|+..+-|.++|..++....... ....|.+
T Consensus 240 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~ 317 (781)
T 3v9f_A 240 ETFTNFHNNPGNIHGALSSYIFSIKQLKDNK--LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARY 317 (781)
T ss_dssp TEEEC-----------CCCCEEEEEECTTSE--EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEE
T ss_pred CcEEEEEcCCCccccccCceEEEEEECCCCC--EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEE
Confidence 44211111 11245689998887764 4456655678899988765432221 1345888
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe---------CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCc
Q 003279 685 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQ---------GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG 755 (834)
Q Consensus 685 l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~---------~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~ 755 (834)
+....++. |.+|+.++.|..|+..+........ .....|.+++.+++|.+.+...++-|.+||..++...
T Consensus 318 i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~ 396 (781)
T 3v9f_A 318 IFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAI 396 (781)
T ss_dssp EEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEE
T ss_pred EEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEE
Confidence 88888754 6778878889999987654322110 0235699999998888776655667999997654110
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEecc---CCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 756 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 756 ~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~---h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
............|.++...+++. |.+++.++.|.+||..+++...+.. ....|.++...+++.+.+. +.+| |.+
T Consensus 397 ~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~~G-l~~ 473 (781)
T 3v9f_A 397 YNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-THAG-VFV 473 (781)
T ss_dssp CC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ETTE-EEE
T ss_pred EccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-ECCc-eEE
Confidence 00000122346788888888876 6667777789999998887665432 3567999998888775554 4444 554
Q ss_pred e
Q 003279 833 W 833 (834)
Q Consensus 833 W 833 (834)
|
T Consensus 474 ~ 474 (781)
T 3v9f_A 474 I 474 (781)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.8e-06 Score=90.06 Aligned_cols=179 Identities=8% Similarity=0.027 Sum_probs=126.4
Q ss_pred CCeEEEEEccCCCcEEEEEeCCC--cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEE
Q 003279 638 TTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCR 714 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs~Dg--~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~ 714 (834)
.....|.|+ + ..++.+++.+| .|+++|+.+++.+..+..........+.++++.|+.... ++.+.+||.++.+.+
T Consensus 43 ~ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 43 AFTEGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp CEEEEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEE
T ss_pred cccceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEE
Confidence 335788998 5 46777777766 899999999999999887766655444555667777765 789999999999999
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC--C---CceEEEEEeCCCCEEEEEE-cCC
Q 003279 715 LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--G---NKFHSCVFHPTFPSLLVIG-CYE 787 (834)
Q Consensus 715 ~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~--~---~~I~svafspdg~~L~sgs-~dg 787 (834)
.++...... ..++ +|+..|+.+. ++.|.++|..+. +.+..+... . ..++.+.|. +|. |++.. .++
T Consensus 121 ~ti~~~~eG-~glt--~dg~~L~~SdGs~~i~~iDp~T~---~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~~~ 192 (262)
T 3nol_A 121 RSFNYDGEG-WGLT--HNDQYLIMSDGTPVLRFLDPESL---TPVRTITVTAHGEELPELNELEWV-DGE-IFANVWQTN 192 (262)
T ss_dssp EEEECSSCC-CCEE--ECSSCEEECCSSSEEEEECTTTC---SEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSS
T ss_pred EEEECCCCc-eEEe--cCCCEEEEECCCCeEEEEcCCCC---eEEEEEEeccCCccccccceeEEE-CCE-EEEEEccCC
Confidence 888743321 2344 5677666665 778999999887 444443332 1 334557776 665 55555 567
Q ss_pred eEEEEECCCCeEEEeccC-------------CCCeEEEEEeCCCCEEEEEec
Q 003279 788 TLELWNMTENKTLTLSAH-------------DKLVSSLAASTVNGMVASASH 826 (834)
Q Consensus 788 ~I~Iwdl~~~~~~~l~~h-------------~~~V~~lafspdg~~LaSgs~ 826 (834)
.|.+.|..+++++....- ....+.|+|+|+++.|+..+.
T Consensus 193 ~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 193 KIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred eEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 999999999998732211 235689999998887666553
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=6.3e-06 Score=96.80 Aligned_cols=264 Identities=9% Similarity=0.023 Sum_probs=160.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCe---------EEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeecc
Q 003279 565 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI---------TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 635 (834)
Q Consensus 565 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I---------~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~ 635 (834)
..|++++.++.|+.+|..+++.+-.+....... ..+++ .+..|++++.|+.|..+|..+++.....-..
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 355556654459999999999987765432210 11222 3567888889999999999998864433221
Q ss_pred C-C--CCeE-EEEEcc---CCCcEEEEEe------CCCcEEEEECCCCceeeEeecCCC---------------------
Q 003279 636 H-S--TTVM-SLDFHP---SKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSG--------------------- 681 (834)
Q Consensus 636 h-~--~~V~-sl~fsp---dg~~llasgs------~Dg~I~lwDl~s~~~i~~~~~~~~--------------------- 681 (834)
. . ..+. ...+.. +++.++++++ .++.|+.+|..+|+.+........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 1 0 0111 111111 1222444544 378999999999998876653210
Q ss_pred ---------------------eeEEEEecCCCEEEEEEc--------------------C----CeEEEEECCCCeEEEE
Q 003279 682 ---------------------ATQMRFQPRLGRILAAAI--------------------E----NYISILDVETQVCRLK 716 (834)
Q Consensus 682 ---------------------i~~l~~sp~g~~ll~~s~--------------------d----g~I~iwDl~t~~~~~~ 716 (834)
-..++++++.+.++++.. | +.|..+|.++++.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 013566777788887773 2 5899999999999988
Q ss_pred EeC--CC--------CCEEEEEEc-CCCC---EEEEEe-CCeEEEEEcCCCCCceeEEEeecCC-------------Cc-
Q 003279 717 LQG--HK--------NQVHSVCWN-TSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG-------------NK- 767 (834)
Q Consensus 717 l~~--h~--------~~I~sl~~s-pdg~---~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~-------------~~- 767 (834)
+.. |. .++. +... .+|+ +++.++ +|.++++|..+++ .+..+.... .+
T Consensus 307 ~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~lw~~~~~~~~~~~~~~~~~~g~p~ 382 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGK---LQNAFPFVDNITWASHIDLKTGRPV 382 (582)
T ss_dssp EESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSSCCCSEEEECTTTCCEE
T ss_pred EeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCC---EecccccccCccccccccccCCCEe
Confidence 753 32 1221 2222 4674 667777 9999999999884 333322211 00
Q ss_pred -------------------------------eEEEEEeCCCCEEEEEE--------------------------------
Q 003279 768 -------------------------------FHSCVFHPTFPSLLVIG-------------------------------- 784 (834)
Q Consensus 768 -------------------------------I~svafspdg~~L~sgs-------------------------------- 784 (834)
...++++|+...+++..
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~ 462 (582)
T 1flg_A 383 EREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYD 462 (582)
T ss_dssp ECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCS
T ss_pred EccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCC
Confidence 01346677666555543
Q ss_pred -cCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 785 -CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 785 -~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.++.|..||+.+++.+-...+...+..-.....+.+++.++.||.|+.||
T Consensus 463 ~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D 513 (582)
T 1flg_A 463 DHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp SCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred CCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEE
Confidence 25789999999999872222222332222223467788899999999876
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.8e-05 Score=86.70 Aligned_cols=237 Identities=9% Similarity=0.002 Sum_probs=153.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEE-eCCCeEEEEecCCCCceee
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLR 631 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~s~~~~i~ 631 (834)
+..+|.+..++. +|+.+. ...|+..++........+.. ...+..++|++....|+.+ ...+.|+.+++..... ..
T Consensus 34 d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~ 109 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EE 109 (349)
T ss_dssp TSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE
T ss_pred CCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-eE
Confidence 345566666644 555444 35688888877655554543 3457899999765555544 4678899999886543 22
Q ss_pred eeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcC--CeEEEEEC
Q 003279 632 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE--NYISILDV 708 (834)
Q Consensus 632 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~d--g~I~iwDl 708 (834)
.+.........+++.+.+..++++-...+.|.++++........+.. ......++++|.++.|+.+... +.|..+++
T Consensus 110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~ 189 (349)
T 3v64_C 110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 189 (349)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence 22223345678999987777877777788999999985543333322 3457899999987877777653 78999998
Q ss_pred CCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-c
Q 003279 709 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-C 785 (834)
Q Consensus 709 ~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs-~ 785 (834)
........+...-.....|+|++++..|+.+. .+.|..+|+..... ...+.........+++. .+ .|+.+. .
T Consensus 190 dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~---~~~~~~~~~~P~giav~-~~-~ly~td~~ 264 (349)
T 3v64_C 190 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR---KAVISQGLPHPFAITVF-ED-SLYWTDWH 264 (349)
T ss_dssp TSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSSCSSEEEEEEE-TT-EEEEEETT
T ss_pred CCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce---EEEEeCCCCCceEEEEE-CC-EEEEecCC
Confidence 75433222222345678999998877777666 67899999875421 11222234456777773 33 455554 4
Q ss_pred CCeEEEEECCCCe
Q 003279 786 YETLELWNMTENK 798 (834)
Q Consensus 786 dg~I~Iwdl~~~~ 798 (834)
.+.|..++..+++
T Consensus 265 ~~~V~~~~~~~G~ 277 (349)
T 3v64_C 265 TKSINSANKFTGK 277 (349)
T ss_dssp TTEEEEEETTTCC
T ss_pred CCeEEEEEccCCC
Confidence 5688888855554
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.5e-06 Score=90.64 Aligned_cols=191 Identities=9% Similarity=0.048 Sum_probs=135.3
Q ss_pred eEEEEeccCC--CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 003279 585 TVKSTLEEHT--QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 662 (834)
Q Consensus 585 ~~~~~l~~h~--~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 662 (834)
+.+.++ .|. .....+.|+ ++.++++.+.+|.|+++|+.+++..... .........+++ +++.+++..-.++.+
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~--~g~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLAS--DGERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEE--CSSCEEEEESSSCEE
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEE--eCCEEEEEEccCCEE
Confidence 344455 233 335688887 4566777778889999999998764333 322222233544 456677777789999
Q ss_pred EEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC-----CCEEEEEEcCCCCEEE
Q 003279 663 RYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGEYLA 737 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~-----~~I~sl~~spdg~~La 737 (834)
.+||..+.+.+..+.....-..++ ++++.|+++..++.|.++|..+.+.+..+.-.. ..++.+.|. +|++++
T Consensus 119 ~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lya 195 (268)
T 3nok_A 119 FTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYA 195 (268)
T ss_dssp EEEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEE
Confidence 999999999999998755434444 567888888888999999999998887765421 245677877 776665
Q ss_pred EEe-CCeEEEEEcCCCCCceeEEEeecC-------------CCceEEEEEeCCCCEEEEEEcC
Q 003279 738 SVS-DELVRVWSIGSGSKGECIHELSCT-------------GNKFHSCVFHPTFPSLLVIGCY 786 (834)
Q Consensus 738 sgs-Dg~I~IwDl~s~~~~~~i~~~~~~-------------~~~I~svafspdg~~L~sgs~d 786 (834)
... ++.|.+.|..++ +.+..+... ....+.|+|+|+++.|++.+..
T Consensus 196 nvw~s~~I~vIDp~TG---~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 196 NIWHSSDVLEIDPATG---TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EETTCSEEEEECTTTC---BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred EECCCCeEEEEeCCCC---cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 554 779999999998 455444321 2467899999998877777654
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.9e-05 Score=87.83 Aligned_cols=236 Identities=9% Similarity=-0.003 Sum_probs=153.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEE-EEeCCCeEEEEecCCCCceeeee
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTF 633 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~La-tgs~Dg~I~IWDl~s~~~~i~~~ 633 (834)
..|.+..++ .+|+.+. ...|+.+++........+.. ...+..++|++.+..|+ +-...+.|+.+++..... ...+
T Consensus 79 ~~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~ 154 (386)
T 3v65_B 79 RSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVV 154 (386)
T ss_dssp SCEEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEEE
T ss_pred CeECCcccc-ceeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEEE
Confidence 445555553 3555444 36788899887665555543 34578999997655555 444678899999886542 2222
Q ss_pred ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcC--CeEEEEECCC
Q 003279 634 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE--NYISILDVET 710 (834)
Q Consensus 634 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~d--g~I~iwDl~t 710 (834)
.........+++.+.+..++++-...+.|.++++........+.. ......++++|.++.|+.+... +.|..+++..
T Consensus 155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence 323345678889887777777777778899999875543333332 2457899999988888777653 6899999875
Q ss_pred CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCC
Q 003279 711 QVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYE 787 (834)
Q Consensus 711 ~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs-~dg 787 (834)
..........-.....|+|++++..|+.+. .+.|..+|+.... ....+.........+++. .+ .|+.+. ..+
T Consensus 235 ~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~P~giav~-~~-~ly~td~~~~ 309 (386)
T 3v65_B 235 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-ED-SLYWTDWHTK 309 (386)
T ss_dssp CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS---CEEEECSSCSSEEEEEEE-TT-EEEEEETTTT
T ss_pred CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe---eEEEEECCCCCceEEEEE-CC-EEEEeeCCCC
Confidence 543333333445678999998777777666 6789999987542 122222234456777773 33 455544 456
Q ss_pred eEEEEECCCCeE
Q 003279 788 TLELWNMTENKT 799 (834)
Q Consensus 788 ~I~Iwdl~~~~~ 799 (834)
.|..++..+++.
T Consensus 310 ~V~~~~~~~G~~ 321 (386)
T 3v65_B 310 SINSANKFTGKN 321 (386)
T ss_dssp EEEEEETTTCCS
T ss_pred eEEEEECCCCcc
Confidence 888888655543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.64 E-value=6.7e-06 Score=84.91 Aligned_cols=192 Identities=15% Similarity=0.140 Sum_probs=134.2
Q ss_pred eEEEEeccCC--CCeEEEEECCCCCEEEEEeCC--CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC
Q 003279 585 TVKSTLEEHT--QWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 660 (834)
Q Consensus 585 ~~~~~l~~h~--~~I~~l~fspdg~~Latgs~D--g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg 660 (834)
+.+.++ .|. .....+.|+. +.++.+.+.+ +.|+++|+.+++. +....-. ...........++.+++..-.++
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv-~~~~~l~-~~~fgeGi~~~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRI-LQRAEVP-PPYFGAGIVAWRDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCE-EEEEECC-TTCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCE-EEEEeCC-CCcceeEEEEeCCEEEEEEeeCC
Confidence 445555 344 4466899986 5555565554 4899999999875 3333322 22322323333566777777899
Q ss_pred cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC-----CCEEEEEEcCCCCE
Q 003279 661 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGEY 735 (834)
Q Consensus 661 ~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~-----~~I~sl~~spdg~~ 735 (834)
.+.+||..+.+.+..+.....-..+ .++++.|+++..++.|.++|..+.+.+.++.-.. ..++.+.|. +|++
T Consensus 86 ~v~v~D~~tl~~~~ti~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l 162 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL 162 (243)
T ss_dssp EEEEEETTTTEEEEEEECSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEEECCcCcEEEEEeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE
Confidence 9999999999999999875544444 4667888888888999999999998887776422 345667776 6766
Q ss_pred EEEEe-CCeEEEEEcCCCCCceeEEEeec-------------CCCceEEEEEeCCCCEEEEEEcC
Q 003279 736 LASVS-DELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCY 786 (834)
Q Consensus 736 Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-------------~~~~I~svafspdg~~L~sgs~d 786 (834)
++... ++.|.+.|..++ +.+..+.. .....+.++++|+++.|++.+..
T Consensus 163 yanvw~s~~I~vIDp~tG---~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 163 LANVWLTSRIARIDPASG---KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EEEETTTTEEEEECTTTC---BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred EEEECCCCeEEEEECCCC---CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 65554 779999999998 45554442 12356899999999888887764
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.8e-06 Score=88.57 Aligned_cols=177 Identities=7% Similarity=0.014 Sum_probs=124.3
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEE
Q 003279 638 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLK 716 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s-~dg~I~iwDl~t~~~~~~ 716 (834)
.....|.|+ ++.++++.+.+|.|+++|+.+++.+..+ ........-+.++++.|+... .++.+.+||.++.+.+.+
T Consensus 55 ~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 55 AFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 345788887 4678888888999999999999999888 656554433444555666555 478999999999999998
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec--CC---CceEEEEEeCCCCEEEEEE-cCCeE
Q 003279 717 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TG---NKFHSCVFHPTFPSLLVIG-CYETL 789 (834)
Q Consensus 717 l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~--~~---~~I~svafspdg~~L~sgs-~dg~I 789 (834)
+..... -..++ +|+..|+.+. ++.|.++|..+. +.+..+.. .. ..++.+.|. +|. |++.. .++.|
T Consensus 132 i~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~---~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I 203 (268)
T 3nok_A 132 TRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGF---ALVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDV 203 (268)
T ss_dssp EECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTC---CEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEE
T ss_pred EeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCC---eEEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeE
Confidence 875322 23444 4677777777 889999999887 44444333 22 234667777 664 55555 46799
Q ss_pred EEEECCCCeEEEecc--------------CCCCeEEEEEeCCCCEEEEEe
Q 003279 790 ELWNMTENKTLTLSA--------------HDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 790 ~Iwdl~~~~~~~l~~--------------h~~~V~~lafspdg~~LaSgs 825 (834)
.+.|..+++++.... -....+.|+|+|+++.|+..+
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 999999999872221 124678999999876544443
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.63 E-value=1e-05 Score=83.58 Aligned_cols=178 Identities=9% Similarity=0.053 Sum_probs=124.6
Q ss_pred CCeEEEEEccCCCcEEEEEeCCC--cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEE
Q 003279 638 TTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCR 714 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs~Dg--~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~ 714 (834)
.....+.|+. ..++.+.+.+| .|+++|+.+++.+..+..........+...++.|+.... ++.+.+||.++.+.+
T Consensus 21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp CCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence 4566899985 45777777654 899999999999999887666655444445666766654 789999999999999
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC-----CceEEEEEeCCCCEEEEEE-cCC
Q 003279 715 LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG-----NKFHSCVFHPTFPSLLVIG-CYE 787 (834)
Q Consensus 715 ~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~-----~~I~svafspdg~~L~sgs-~dg 787 (834)
.++..... -..++ +++..|+.+. ++.|.++|..+. +.+..+.... ..++.+.|. +|. |++.. .++
T Consensus 99 ~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~---~~~~~I~V~~~g~~~~~lNeLe~~-~G~-lyanvw~s~ 170 (243)
T 3mbr_X 99 ARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTL---QQVGSIKVTAGGRPLDNLNELEWV-NGE-LLANVWLTS 170 (243)
T ss_dssp EEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTC---CEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTTT
T ss_pred EEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCC---eEEEEEEEccCCcccccceeeEEe-CCE-EEEEECCCC
Confidence 98875332 23454 4566666655 789999999887 4444443321 344566665 555 55554 567
Q ss_pred eEEEEECCCCeEEEecc--------------CCCCeEEEEEeCCCCEEEEEe
Q 003279 788 TLELWNMTENKTLTLSA--------------HDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 788 ~I~Iwdl~~~~~~~l~~--------------h~~~V~~lafspdg~~LaSgs 825 (834)
.|.+.|..+++++.... .....+.|+|+|+++.|+..+
T Consensus 171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 99999999999883211 123678999999877665554
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.2e-05 Score=94.45 Aligned_cols=251 Identities=9% Similarity=-0.008 Sum_probs=151.3
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEeccCC----CCeEE-EEECCCCCEEEEEe------CCCeEEEEecCCCCceeeeecc
Q 003279 567 LATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTFTG 635 (834)
Q Consensus 567 Lasgs~Dg~I~IWd~~t~~~~~~l~~h~----~~I~~-l~fspdg~~Latgs------~Dg~I~IWDl~s~~~~i~~~~~ 635 (834)
|++++.|+.|+.+|..+++.+....... ..+.+ ..+. ++ .+++++ .++.|+.+|..+++...+....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 8888899999999999999987654322 01211 1111 34 455554 3899999999988764333222
Q ss_pred CCC------------------------------------Ce-EEEEEccCCCcEEEEEeCC----------------CcE
Q 003279 636 HST------------------------------------TV-MSLDFHPSKEDLLCSCDNN----------------SEI 662 (834)
Q Consensus 636 h~~------------------------------------~V-~sl~fspdg~~llasgs~D----------------g~I 662 (834)
... .+ ..+++.+... +++.+..+ +.|
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g-~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN-LIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCC-EEEEeCCCCccccCcccCCCccccceE
Confidence 110 01 1345556655 44444433 489
Q ss_pred EEEECCCCceeeEeecCCC----------eeEEEEe-cCC---CEEEEEEcCCeEEEEECCCCeEEEEEeCCC-------
Q 003279 663 RYWSINNGSCAGVFKCQSG----------ATQMRFQ-PRL---GRILAAAIENYISILDVETQVCRLKLQGHK------- 721 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~~~~~----------i~~l~~s-p~g---~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~------- 721 (834)
..+|.++++.+..+..... ..-+... .++ ..++.++.+|.++++|.++++.+.......
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 360 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence 9999999999988875321 1112222 456 356667789999999999999887665211
Q ss_pred ------CCE--------------------------EEEEEcCCCCEEEEEe-----------------------------
Q 003279 722 ------NQV--------------------------HSVCWNTSGEYLASVS----------------------------- 740 (834)
Q Consensus 722 ------~~I--------------------------~sl~~spdg~~Lasgs----------------------------- 740 (834)
.++ ..++++|+..++++..
T Consensus 361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 111 1356677666554431
Q ss_pred -----------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCC-
Q 003279 741 -----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDK- 807 (834)
Q Consensus 741 -----------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~- 807 (834)
++.|..||+.++ +.+-..... .+...-.+...+..+++++.|+.|+.||.++++++ .+.....
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG---~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~ 516 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITG---DYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA 516 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTC---CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred CCcCCcccCCCcCeEEEEECCCC---CEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCc
Confidence 256788888877 333333221 11111123335667888999999999999999988 3332221
Q ss_pred CeEEEEEeCCCC-EEEEE
Q 003279 808 LVSSLAASTVNG-MVASA 824 (834)
Q Consensus 808 ~V~~lafspdg~-~LaSg 824 (834)
...-+.|..+|+ |+++.
T Consensus 517 ~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 517 IGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp CSCCEEEEETTEEEEEEE
T ss_pred EeccEEEEeCCEEEEEEE
Confidence 222355567777 44443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.60 E-value=8.4e-06 Score=92.09 Aligned_cols=233 Identities=9% Similarity=0.081 Sum_probs=140.6
Q ss_pred CeEEEEECC-CCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC----cEEEEECCCC
Q 003279 596 WITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNG 670 (834)
Q Consensus 596 ~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg----~I~lwDl~s~ 670 (834)
....|+|+| ++..|+++...+.|+.+|+.... +..+.........|+|+++++.++++...++ .+.+++.. +
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~--v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY--VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-S 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE--EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE--EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-C
Confidence 457899998 45566666655889999988644 3444445567889999999886776654333 34444433 3
Q ss_pred cee--eEeecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEEe-CCCCCEEEEEEcCCCCEEEEEe--CCeE
Q 003279 671 SCA--GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELV 744 (834)
Q Consensus 671 ~~i--~~~~~~~~i~~l~~sp~g~~ll~~s-~dg~I~iwDl~t~~~~~~l~-~h~~~I~sl~~spdg~~Lasgs--Dg~I 744 (834)
... ..+........++++|+++.|+++. .++.|..||...+....... +.......++|+|+|++|+.+. .+.|
T Consensus 215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 222 2333345577888999545555554 56899999998776522222 1224578999999999666665 6789
Q ss_pred EEEEcCCCC-CceeEEEeecC---------------CCceE-EEEEe--------CCCCEEEEEE-cCCeEEEEECCCCe
Q 003279 745 RVWSIGSGS-KGECIHELSCT---------------GNKFH-SCVFH--------PTFPSLLVIG-CYETLELWNMTENK 798 (834)
Q Consensus 745 ~IwDl~s~~-~~~~i~~~~~~---------------~~~I~-svafs--------pdg~~L~sgs-~dg~I~Iwdl~~~~ 798 (834)
.+++..... ....+..+... -.... .+++. +++. |+++. ..+.|+.++ .++.
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~~n~~I~~i~-~~G~ 372 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDRENHCIRILT-PQGR 372 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEGGGTEEEEEC-TTSE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEECCCcEEEEEC-CCCc
Confidence 998876421 00011111111 01123 45554 2344 55554 456899998 4566
Q ss_pred EEEeccC---------C---------CCeEEEEEeCC-CCEEEEEecCCcEEEe
Q 003279 799 TLTLSAH---------D---------KLVSSLAASTV-NGMVASASHDKCVKIW 833 (834)
Q Consensus 799 ~~~l~~h---------~---------~~V~~lafspd-g~~LaSgs~DG~I~IW 833 (834)
...+.+. + .....|+++++ +.++++-.....|+.+
T Consensus 373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 426 (430)
T 3tc9_A 373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI 426 (430)
T ss_dssp EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 5544322 1 25789999995 5555554455667654
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.59 E-value=9e-05 Score=80.25 Aligned_cols=276 Identities=8% Similarity=-0.017 Sum_probs=154.5
Q ss_pred CeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec----cCCCCeEEEEECCCCCEEEEEeC
Q 003279 539 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPSLSRLATSSA 614 (834)
Q Consensus 539 g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~----~h~~~I~~l~fspdg~~Latgs~ 614 (834)
+.++..+. + .....+.+|.|.+++..+++ +.+|.|. ...+.++.-..+. .....+.+|.|.+ +. ++.++.
T Consensus 24 g~~W~~~~-~-~~~~~~~~v~~~~~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~ 97 (327)
T 2xbg_A 24 YNPWEAIQ-L-PTTATILDMSFIDRHHGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGE 97 (327)
T ss_dssp SCCEEEEE-C-SCSSCEEEEEESSSSCEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEE
T ss_pred CCCceEee-c-CCCCcEEEEEECCCCcEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEEC
Confidence 44444443 2 23457999999888877774 4567653 3334333222221 2345688999976 44 444456
Q ss_pred CCeEEEEecCCCCceeeeec---cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee--cCCCeeEEEEec
Q 003279 615 DRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQP 689 (834)
Q Consensus 615 Dg~I~IWDl~s~~~~i~~~~---~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~--~~~~i~~l~~sp 689 (834)
++.|+. ...+........ .+...+..|.+.+++. +++++ .++.|.. ....++.-.... ....+..+.+.+
T Consensus 98 ~g~i~~--S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~-~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~ 172 (327)
T 2xbg_A 98 PPIMLH--TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS-AEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP 172 (327)
T ss_dssp TTEEEE--ESSTTSSCEECCCCTTCSSCEEEEEEEETTE-EEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT
T ss_pred CCeEEE--ECCCCCCceECccccCCCCCeEEEEEECCCC-EEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC
Confidence 665544 322222222221 2335577888776643 55444 4554432 222233222222 234688899999
Q ss_pred CCCEEEEEEcCCeEEE-EEC--CCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeec---
Q 003279 690 RLGRILAAAIENYISI-LDV--ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC--- 763 (834)
Q Consensus 690 ~g~~ll~~s~dg~I~i-wDl--~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~--- 763 (834)
++..++++ .++.|+. .|- .+.+.+. ......+..+.+.+++.+++++.+|.+++.+...+ .....+..
T Consensus 173 ~~~~~~~g-~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G---~tW~~~~~~~~ 246 (327)
T 2xbg_A 173 SGEYVAVS-SRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNS---ENWGELLSPLR 246 (327)
T ss_dssp TSCEEEEE-TTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEE---EEECCCBCTTS
T ss_pred CCcEEEEE-CCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCC---CeeEeccCCcc
Confidence 87665544 4555544 342 3344432 23556789999999998887777888877653322 11111111
Q ss_pred -CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-ec---cCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 764 -TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LS---AHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 764 -~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~-l~---~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
....+..+++.+++. +++++.++.| ++..+.++.-. +. .+...+.++.|.+++ .+++++.+|.|.-++
T Consensus 247 ~~~~~~~~v~~~~~~~-~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 247 RNSVGFLDLAYRTPNE-VWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp SCCSCEEEEEESSSSC-EEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred cCCcceEEEEecCCCE-EEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 223588899998776 4555567766 44555554332 22 234678889997554 466677889887653
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=0.00012 Score=78.72 Aligned_cols=219 Identities=9% Similarity=0.016 Sum_probs=140.8
Q ss_pred EEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC----CceeeEeec-CCCe
Q 003279 608 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFKC-QSGA 682 (834)
Q Consensus 608 ~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s----~~~i~~~~~-~~~i 682 (834)
+|+.+ ....|+..|+..... ...+ .....+..++|++.+..++++-..++.|..+++.. ......+.. ....
T Consensus 3 ~ll~~-~~~~I~~i~~~~~~~-~~~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 3 YLFFT-NRHEVRKMTLDRSEY-TSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (316)
T ss_dssp EEEEE-CBSSEEEEETTSCCC-EEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEE-CCCeEEEEECCCcce-Eehh-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence 34444 345689999987553 2222 34456889999998777887777789999999986 222222322 2456
Q ss_pred eEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEEcCCCCCceeE
Q 003279 683 TQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECI 758 (834)
Q Consensus 683 ~~l~~sp~g~~ll~~s-~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--D-g~I~IwDl~s~~~~~~i 758 (834)
..+++++.++.|+++. ..+.|.++|+........+.........++++|.+.+|+.+. . +.|..+++.... ..
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~---~~ 156 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IY 156 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC---EE
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC---eE
Confidence 7899998777776665 468999999986544444443445778999999766665555 3 688888876431 11
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEec---cCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 759 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLS---AHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 759 ~~~~~~~~~I~svafspdg~~L~sgs~d-g~I~Iwdl~~~~~~~l~---~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
............+++++++..|+.+... +.|..+|+.......+. ........|++. .+.++++-...+.|..+
T Consensus 157 ~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~ 234 (316)
T 1ijq_A 157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 234 (316)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEE
Confidence 1122234567899999988888877754 59999999765433332 223456788885 34455555455666554
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.9e-05 Score=92.77 Aligned_cols=255 Identities=10% Similarity=0.028 Sum_probs=153.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCC----CeE-E-EEECC--CCC-EEEEEe------CCCeEEEEecCCCCc
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ----WIT-D-VRFSP--SLS-RLATSS------ADRTVRVWDTENPDY 628 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~----~I~-~-l~fsp--dg~-~Latgs------~Dg~I~IWDl~s~~~ 628 (834)
+..|++++.|+.|+.+|.++++.+........ .+. . +.... +++ .+++++ .++.|+.+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 45788888999999999999999876643221 111 1 11111 233 565654 378999999998875
Q ss_pred eeeeeccCCC-----------------------------------------CeEEEEEccCCCcEEEEEe----------
Q 003279 629 SLRTFTGHST-----------------------------------------TVMSLDFHPSKEDLLCSCD---------- 657 (834)
Q Consensus 629 ~i~~~~~h~~-----------------------------------------~V~sl~fspdg~~llasgs---------- 657 (834)
.... ..... .-..++++|+...+++..+
T Consensus 197 ~W~~-~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 197 IWMR-PFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EEEE-ESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred Eeec-CCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence 3322 11100 0013456666554443332
Q ss_pred --C-------C----CcEEEEECCCCceeeEeecCC-------CeeE-EEEe---cCCC---EEEEEEcCCeEEEEECCC
Q 003279 658 --N-------N----SEIRYWSINNGSCAGVFKCQS-------GATQ-MRFQ---PRLG---RILAAAIENYISILDVET 710 (834)
Q Consensus 658 --~-------D----g~I~lwDl~s~~~i~~~~~~~-------~i~~-l~~s---p~g~---~ll~~s~dg~I~iwDl~t 710 (834)
. | +.|..+|..+++.+..+.... .+.. +.+. .+++ .+++++.+|.++++|.++
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence 1 2 589999999999998886421 1111 2222 4563 677788899999999999
Q ss_pred CeEEEEEeCCCC--CE-------------------------------------------EEEEEcCCCCEEEEEe-----
Q 003279 711 QVCRLKLQGHKN--QV-------------------------------------------HSVCWNTSGEYLASVS----- 740 (834)
Q Consensus 711 ~~~~~~l~~h~~--~I-------------------------------------------~sl~~spdg~~Lasgs----- 740 (834)
++.+..+..... .. ..++++|+..++++..
T Consensus 356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~ 435 (582)
T 1flg_A 356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE 435 (582)
T ss_dssp CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence 998876654320 00 1245666544444321
Q ss_pred -----------------------------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003279 741 -----------------------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 791 (834)
Q Consensus 741 -----------------------------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~I 791 (834)
++.|+.||+.++ +.+-...... .+..-.+...+..+++++.|+.|+.
T Consensus 436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A 511 (582)
T 1flg_A 436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSG---KVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKA 511 (582)
T ss_dssp EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTC---CEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEE
T ss_pred eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCC---CEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEE
Confidence 467889999888 4444433221 2222222334667888999999999
Q ss_pred EECCCCeEE-EeccCCCCeE--EEEEeCCCC-EEEEE
Q 003279 792 WNMTENKTL-TLSAHDKLVS--SLAASTVNG-MVASA 824 (834)
Q Consensus 792 wdl~~~~~~-~l~~h~~~V~--~lafspdg~-~LaSg 824 (834)
||.++++.+ .+... ..+. -+.|..+|+ ||++.
T Consensus 512 ~D~~tG~~lW~~~~~-~g~~a~P~~y~~~G~qYv~~~ 547 (582)
T 1flg_A 512 FDAKSGKELWKFQTG-SGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp EETTTCCEEEEEECS-SCCCSCCEEEEETTEEEEEEE
T ss_pred EECCCCCEEEEecCC-CCcccCceEEEECCEEEEEEE
Confidence 999999998 33332 2222 266677887 44433
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.54 E-value=7.6e-05 Score=81.68 Aligned_cols=228 Identities=9% Similarity=0.045 Sum_probs=146.7
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEe
Q 003279 597 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 676 (834)
Q Consensus 597 I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~ 676 (834)
.+|.+..++ .+|+.+ ....|+..++..... ..+......+..++|++.+..++++-...+.|..+++........+
T Consensus 36 ~~C~~~~~~-~~ll~~-~~~~I~~i~~~g~~~--~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 36 RSCKALGPE-PVLLFA-NRIDIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp SCEEESSSC-CEEEEE-CBSCEEEECTTSCCE--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CcccccccC-ceeEee-cccceEEEeCCCCee--EEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 345554443 344433 345588888875432 3333334558899999887778777777889999999876544443
Q ss_pred ec-CCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEEcCC
Q 003279 677 KC-QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGS 751 (834)
Q Consensus 677 ~~-~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--D-g~I~IwDl~s 751 (834)
.. ......+++.+.++.|+.+.. .+.|.++++........+.........++++|.+.+|+.+. . +.|..+++..
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 32 245678999987777766665 57999999886544434444445678999999776666655 4 6888888875
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEE-eccCCCCeEEEEEeCCCCEEEEEecCCc
Q 003279 752 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKC 829 (834)
Q Consensus 752 ~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d-g~I~Iwdl~~~~~~~-l~~h~~~V~~lafspdg~~LaSgs~DG~ 829 (834)
... ...+.........+++++++..|+.+... +.|..+|+....... +.........|++. .+.++++-...+.
T Consensus 192 ~~~---~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~ 267 (349)
T 3v64_C 192 SGR---RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKS 267 (349)
T ss_dssp CSC---EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTE
T ss_pred CCc---EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCe
Confidence 421 11112234457899999988888877654 589999987654332 32334567788873 3444444444455
Q ss_pred EEE
Q 003279 830 VKI 832 (834)
Q Consensus 830 I~I 832 (834)
|..
T Consensus 268 V~~ 270 (349)
T 3v64_C 268 INS 270 (349)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.54 E-value=6.8e-06 Score=99.57 Aligned_cols=238 Identities=10% Similarity=0.044 Sum_probs=135.9
Q ss_pred CeEEEEEc-CCCCEEEEEeC-CC----cEEEEeCCCC-eEEE-EeccCCCCeEEEEECCCCCEEEEEeCC-----CeEEE
Q 003279 554 KVESCHFS-PDGKLLATGGH-DK----KAVLWCTESF-TVKS-TLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRV 620 (834)
Q Consensus 554 ~V~sl~fS-pdg~~Lasgs~-Dg----~I~IWd~~t~-~~~~-~l~~h~~~I~~l~fspdg~~Latgs~D-----g~I~I 620 (834)
.+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+. .....++|+||++.|+....| ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57889999 99999886643 22 4999999998 6321 111 123578999999888877765 36888
Q ss_pred EecCCCCce-eeeec-cCCCCeEEEEEccCCCcEEEEEeC--CCcEEEEECCCCc--e--eeEeec-CCCeeEEEEecCC
Q 003279 621 WDTENPDYS-LRTFT-GHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGS--C--AGVFKC-QSGATQMRFQPRL 691 (834)
Q Consensus 621 WDl~s~~~~-i~~~~-~h~~~V~sl~fspdg~~llasgs~--Dg~I~lwDl~s~~--~--i~~~~~-~~~i~~l~~sp~g 691 (834)
+++.++... ...+. ........+.|+||++.++++... ...|+++|+.++. . ...... ......+.|+. +
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T 330 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence 888765421 22222 233456788999999988877643 3468889998752 2 222221 22334444443 5
Q ss_pred CEEEEEEcC-----CeEEEEECCCCeEEEE-EeCCCC--CEEEEEEcCCCCEEEEE-e-CC--eEEEEEc-------CCC
Q 003279 692 GRILAAAIE-----NYISILDVETQVCRLK-LQGHKN--QVHSVCWNTSGEYLASV-S-DE--LVRVWSI-------GSG 752 (834)
Q Consensus 692 ~~ll~~s~d-----g~I~iwDl~t~~~~~~-l~~h~~--~I~sl~~spdg~~Lasg-s-Dg--~I~IwDl-------~s~ 752 (834)
+.|+..+.. ..|.++|+.++..... +..+.. .+..+.+. +..|+.. . ++ .|.++|+ ..+
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g 408 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMADSQDGVFKAG 408 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEECCTTTSCCCTT
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEecccccccccCC
Confidence 666655543 2688888875311112 222333 34555554 4455444 4 67 5666675 232
Q ss_pred CCceeEEEeecCC-CceEEEEE----eCCCCEE-EEEEcC---CeEEEEECCCCeEE
Q 003279 753 SKGECIHELSCTG-NKFHSCVF----HPTFPSL-LVIGCY---ETLELWNMTENKTL 800 (834)
Q Consensus 753 ~~~~~i~~~~~~~-~~I~svaf----spdg~~L-~sgs~d---g~I~Iwdl~~~~~~ 800 (834)
. .+..+.... ..+..+.+ ++++..+ ++.++. ..|+.+|+.+++..
T Consensus 409 ~---~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~ 462 (751)
T 2xe4_A 409 T---GLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRT 462 (751)
T ss_dssp T---CCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEE
T ss_pred c---cceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEE
Confidence 1 022222111 12233322 3455544 443433 27888888877654
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.53 E-value=4.2e-05 Score=82.68 Aligned_cols=226 Identities=8% Similarity=0.011 Sum_probs=144.5
Q ss_pred EEEEEeCCCcEEEEeCCCCe--EEEEeccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEecCCCCceeeeeccCCCCeEE
Q 003279 566 LLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 642 (834)
Q Consensus 566 ~Lasgs~Dg~I~IWd~~t~~--~~~~l~~h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~s 642 (834)
+|+.+. ...|+.++++... ....+. ....+..++|.+.+..| ++-...+.|..+++.........+...-.....
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g 83 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 83 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence 344443 4678889987653 222222 22346789999854444 455567889999988653212222223345678
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEECCCCceeeEe-ecCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEEeC
Q 003279 643 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQG 719 (834)
Q Consensus 643 l~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~-~~~~~i~~l~~sp~g~~ll~~s~--dg~I~iwDl~t~~~~~~l~~ 719 (834)
+++.+.+..++++-...+.|.++++........+ ........+++.|.++.|+.+.. .+.|..+++........+..
T Consensus 84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 163 (318)
T 3sov_A 84 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 163 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence 9998877777777777889999999754433333 22345789999998888887774 47899999875432222333
Q ss_pred CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCC
Q 003279 720 HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTE 796 (834)
Q Consensus 720 h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs-~dg~I~Iwdl~~ 796 (834)
.-.....|+|++++..|+.+. .+.|..+|+..... ..+ ..........+++.. ..++.+. ..+.|..++..+
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~--~~~~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAV--VKGSLPHPFALTLFE--DILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE--ECSCCSCEEEEEEET--TEEEEEETTTTEEEEEETTT
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEE--ecCCCCCceEEEEeC--CEEEEEecCCCeEEEEECCC
Confidence 345678999999877777666 67999999875422 222 222344566777753 3455444 456899999866
Q ss_pred Ce
Q 003279 797 NK 798 (834)
Q Consensus 797 ~~ 798 (834)
++
T Consensus 239 G~ 240 (318)
T 3sov_A 239 GE 240 (318)
T ss_dssp CC
T ss_pred CC
Confidence 65
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.52 E-value=0.00021 Score=79.73 Aligned_cols=230 Identities=8% Similarity=-0.037 Sum_probs=151.2
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEE-eCCCeEEEEecCCCC---ceeeeeccCCCCeE
Q 003279 566 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPD---YSLRTFTGHSTTVM 641 (834)
Q Consensus 566 ~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~s~~---~~i~~~~~h~~~V~ 641 (834)
+|+.+. ...|+..+++.......+. ....+..|+|++.+..|+.+ ...+.|+.+++.... .....+........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 555554 4689999988765554443 45668899999866555555 456889999987521 11223333445678
Q ss_pred EEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEEe
Q 003279 642 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQ 718 (834)
Q Consensus 642 sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~--dg~I~iwDl~t~~~~~~l~ 718 (834)
.|++.+.+..++++-...+.|.+.+++.......+. .......++++|.+++|+.+.. .+.|..+++........+.
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence 899998777788777778899999998665544444 2345889999998888887764 3789999987654433334
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 003279 719 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 795 (834)
Q Consensus 719 ~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~-dg~I~Iwdl~ 795 (834)
..-.....|++++++..|+.+. .+.|..+|+..... ..+............+++. +..|+.+.. .+.|..+|..
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~ 319 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 319 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESS
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcC
Confidence 3446788999999888777776 67899999875422 2222221223345566663 345555544 4589889866
Q ss_pred CCeEE
Q 003279 796 ENKTL 800 (834)
Q Consensus 796 ~~~~~ 800 (834)
+++.+
T Consensus 320 ~G~~~ 324 (400)
T 3p5b_L 320 TGSDV 324 (400)
T ss_dssp SCCCC
T ss_pred CCCce
Confidence 66433
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.50 E-value=6.5e-05 Score=83.44 Aligned_cols=228 Identities=9% Similarity=0.032 Sum_probs=148.5
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee
Q 003279 598 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 677 (834)
Q Consensus 598 ~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~ 677 (834)
.|.+..+ ..+|+.+ ....|+.+++..... ..+......+..++|++.+..++++-...+.|..+++........+.
T Consensus 80 ~C~~~~~-~~~l~~~-~~~~I~~i~~~~~~~--~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 80 SCKALGP-EPVLLFA-NRIDIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp CEEECSS-CCEEEEE-CBSCEEEECTTSCCC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred eECCccc-cceeEee-cCccceeeccCCCcE--EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 3444444 2344444 445788888876543 33333445688999998877788777778899999998765444433
Q ss_pred c-CCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEEcCCC
Q 003279 678 C-QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSG 752 (834)
Q Consensus 678 ~-~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--D-g~I~IwDl~s~ 752 (834)
. ......+++.+.++.|+.+.. .+.|.++++........+.........|+++|.+.+|+.+. . +.|..+++...
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~ 235 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 235 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence 2 234677899987777776665 57899999876544444444446788999999777666665 4 67888888654
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEE-eccCCCCeEEEEEeCCCCEEEEEecCCcE
Q 003279 753 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCV 830 (834)
Q Consensus 753 ~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d-g~I~Iwdl~~~~~~~-l~~h~~~V~~lafspdg~~LaSgs~DG~I 830 (834)
. ..............++|+|++..|+.+... +.|..+|+....... +.........|++. .+.++++-...+.|
T Consensus 236 ~---~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V 311 (386)
T 3v65_B 236 G---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSI 311 (386)
T ss_dssp S---CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred C---cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeE
Confidence 2 122222334457899999988888877654 589999987654432 33334567788883 34455554455556
Q ss_pred EEe
Q 003279 831 KIW 833 (834)
Q Consensus 831 ~IW 833 (834)
..+
T Consensus 312 ~~~ 314 (386)
T 3v65_B 312 NSA 314 (386)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.2e-05 Score=79.86 Aligned_cols=199 Identities=11% Similarity=0.150 Sum_probs=132.9
Q ss_pred eeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC--CCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003279 632 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVE 709 (834)
Q Consensus 632 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~--~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~ 709 (834)
.+.+-...+..++|+|+++.++++...++.|...|+. ++.+..+... .....+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4455667899999999988888888889999999998 8888887653 568889999887655554456899999876
Q ss_pred CCe---EEEEEe------CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-------cCCCceEEEE
Q 003279 710 TQV---CRLKLQ------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------CTGNKFHSCV 772 (834)
Q Consensus 710 t~~---~~~~l~------~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-------~~~~~I~sva 772 (834)
... .+.... ........|+|+|.+..|+++. .+...||.+........+..+. .....+..++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 543 222222 1334568999999987777766 3334444443110001111111 1234578999
Q ss_pred EeCCCCEEEEEEcC-CeEEEEECCCCeEE---Eecc-C------CCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 773 FHPTFPSLLVIGCY-ETLELWNMTENKTL---TLSA-H------DKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 773 fspdg~~L~sgs~d-g~I~Iwdl~~~~~~---~l~~-h------~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
++|....+++.+.. ..|.++|.... ++ .+.. . -.....|+|.++|+++++ ++...+++|
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 99987777666665 48889997755 44 2221 1 125689999999985555 666666654
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.44 E-value=4.9e-05 Score=82.41 Aligned_cols=194 Identities=13% Similarity=0.215 Sum_probs=135.2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCC----CC---EEEEEeC---CCeEEEEecCCCCceeee
Q 003279 563 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS----LS---RLATSSA---DRTVRVWDTENPDYSLRT 632 (834)
Q Consensus 563 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspd----g~---~Latgs~---Dg~I~IWDl~s~~~~i~~ 632 (834)
...+++.....+-+.+||+ +++.+..+.. +.++.+..-|+ ++ ++++... +.+|.+|+++.....+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 4456666677789999999 8899888854 56777777663 22 2333333 578999988532222444
Q ss_pred ecc------CC-CCeEEEEE--ccC-CCcEEEEEeCCCcEEEEECC-------CCceeeEeecCCCeeEEEEecCCCEEE
Q 003279 633 FTG------HS-TTVMSLDF--HPS-KEDLLCSCDNNSEIRYWSIN-------NGSCAGVFKCQSGATQMRFQPRLGRIL 695 (834)
Q Consensus 633 ~~~------h~-~~V~sl~f--spd-g~~llasgs~Dg~I~lwDl~-------s~~~i~~~~~~~~i~~l~~sp~g~~ll 695 (834)
+.. .. ..+..+|+ ++. +..++++...+|.+..|++. +.+.++.|...+.+..+.+.+....|+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY 195 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence 421 12 56777888 664 44567788888999999982 346778888888999999999999999
Q ss_pred EEEcCCeEEEEECC-----CCeEEEEEe-CC-CCCEEEEEE--cCCCC-EEEEEe--CCeEEEEEcC-CCCCceeEEEee
Q 003279 696 AAAIENYISILDVE-----TQVCRLKLQ-GH-KNQVHSVCW--NTSGE-YLASVS--DELVRVWSIG-SGSKGECIHELS 762 (834)
Q Consensus 696 ~~s~dg~I~iwDl~-----t~~~~~~l~-~h-~~~I~sl~~--spdg~-~Lasgs--Dg~I~IwDl~-s~~~~~~i~~~~ 762 (834)
++-++..|..||.+ +++.+..+. ++ ...+..|++ .++++ ||++++ ++.+.|||.. +. +.+..+.
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~---~~vg~f~ 272 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKN---KYVADFR 272 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTC---CEEEEEE
T ss_pred EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCC---cEEEEEE
Confidence 99999888888866 345565542 22 246888888 45555 666666 7799999996 33 4444443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.43 E-value=8.1e-05 Score=83.96 Aligned_cols=235 Identities=10% Similarity=0.122 Sum_probs=143.3
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC-C----eEEEEecCCCC
Q 003279 554 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R----TVRVWDTENPD 627 (834)
Q Consensus 554 ~V~sl~fSp-dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D-g----~I~IWDl~s~~ 627 (834)
....++|+| ++..|+++...+.|+.+|.+++....... .......|+|++++++|+++... + .+.+++.....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 457899998 45567666665889999998876554443 45568899999999966666542 1 34444443221
Q ss_pred ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec--CCCeeEEEEecCCCEEEEEEc-CCeEE
Q 003279 628 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAI-ENYIS 704 (834)
Q Consensus 628 ~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~--~~~i~~l~~sp~g~~ll~~s~-dg~I~ 704 (834)
.....+. .......++++|++..++++-..++.|..|+...+........ ......++|+|++++|+++.. .+.|.
T Consensus 217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 217 KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 1112222 2344678889995556776766788999999987665333333 234778999999997766665 57899
Q ss_pred EEECCC--CeE--EEEEeCC---------------CCCEE-EEEEc--------CCCCEEEEEe-CCeEEEEEcCCCCCc
Q 003279 705 ILDVET--QVC--RLKLQGH---------------KNQVH-SVCWN--------TSGEYLASVS-DELVRVWSIGSGSKG 755 (834)
Q Consensus 705 iwDl~t--~~~--~~~l~~h---------------~~~I~-sl~~s--------pdg~~Lasgs-Dg~I~IwDl~s~~~~ 755 (834)
.++... +.. +..+.+. -.... .++.. ++|.++++-. .+.|+.++. .+
T Consensus 296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G--- 371 (430)
T 3tc9_A 296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QG--- 371 (430)
T ss_dssp EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TS---
T ss_pred EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CC---
Confidence 987653 221 1122111 01223 45553 3455555544 678888883 33
Q ss_pred eeEEEeecC------------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 003279 756 ECIHELSCT------------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 795 (834)
Q Consensus 756 ~~i~~~~~~------------------~~~I~svafspdg~~L~sgs~-dg~I~Iwdl~ 795 (834)
. +..+... -.....+++++++..|+++.. ++.|+.++++
T Consensus 372 ~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 372 R-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp E-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred c-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 2 2222111 124788999996555665554 4578877754
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.42 E-value=6.2e-05 Score=85.01 Aligned_cols=233 Identities=14% Similarity=0.111 Sum_probs=139.6
Q ss_pred CeEEEEECCC--CCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC---C-cEEEEECCC
Q 003279 596 WITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---S-EIRYWSINN 669 (834)
Q Consensus 596 ~I~~l~fspd--g~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D---g-~I~lwDl~s 669 (834)
....|+|+|+ ...|+.+...+.|+.+|..++. +..+........+|+|++++. ++++.... . .+..++...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~--v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY--VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE--EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE--EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 4578999984 4456555544889999997654 444444556789999999988 66554321 1 233333322
Q ss_pred Cce-eeEeecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEE-eC-CCCCEEEEEEcCCCCEEEEEe--CCe
Q 003279 670 GSC-AGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKL-QG-HKNQVHSVCWNTSGEYLASVS--DEL 743 (834)
Q Consensus 670 ~~~-i~~~~~~~~i~~l~~sp~g~~ll~~s-~dg~I~iwDl~t~~~~~~l-~~-h~~~I~sl~~spdg~~Lasgs--Dg~ 743 (834)
+.. ...+........++++++.+.|+++. .++.|+.+|..++.....+ .. .......++|+|++++|+.+. .+.
T Consensus 217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 217 GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred CeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 211 11222334567788999445555554 5678999999877652222 21 222345799999999666666 679
Q ss_pred EEEEEcCC--CCCceeEEEeecC---------------CCceEEEEE---------eCCCCEEEEEEcCCeEEEEECCCC
Q 003279 744 VRVWSIGS--GSKGECIHELSCT---------------GNKFHSCVF---------HPTFPSLLVIGCYETLELWNMTEN 797 (834)
Q Consensus 744 I~IwDl~s--~~~~~~i~~~~~~---------------~~~I~svaf---------spdg~~L~sgs~dg~I~Iwdl~~~ 797 (834)
|+.+++.. +.. .....+... -.....+++ .+++.++++-...+.|+.++. ++
T Consensus 297 I~~~~~d~~~~~~-~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 297 IYRVDYNRETGKL-AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEBCTTTCCB-CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEeCCCCCccc-CcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 99988763 211 111111111 123567888 566654444444568999985 55
Q ss_pred eEEEeccC------------------CCCeEEEEEe-CCCCEEEEEecCCcEEEe
Q 003279 798 KTLTLSAH------------------DKLVSSLAAS-TVNGMVASASHDKCVKIW 833 (834)
Q Consensus 798 ~~~~l~~h------------------~~~V~~lafs-pdg~~LaSgs~DG~I~IW 833 (834)
.+..+.+. -.....|+++ +++.++++=...+.|+.+
T Consensus 375 ~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 429 (433)
T 4hw6_A 375 RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI 429 (433)
T ss_dssp EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 55544322 1247789999 566555555556677754
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.42 E-value=0.0006 Score=71.07 Aligned_cols=202 Identities=11% Similarity=0.092 Sum_probs=137.3
Q ss_pred EEecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEec
Q 003279 546 QLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDT 623 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~L-asgs~Dg~I~IWd~~t~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 623 (834)
+.+.+-.+.+..++|+|++..| ++...++.|...|.. ++.+..+. .-......|++.+++.++++.-.++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 5677777889999999976654 457778899999988 88887763 22356889999998887777667789999998
Q ss_pred CCCCc--eeeee------ccCCCCeEEEEEccCCCcEEEEEeCCC-cEEEEEC-CCCceeeEee--------cCCCeeEE
Q 003279 624 ENPDY--SLRTF------TGHSTTVMSLDFHPSKEDLLCSCDNNS-EIRYWSI-NNGSCAGVFK--------CQSGATQM 685 (834)
Q Consensus 624 ~s~~~--~i~~~------~~h~~~V~sl~fspdg~~llasgs~Dg-~I~lwDl-~s~~~i~~~~--------~~~~i~~l 685 (834)
..... .+... ...+.....|+|+|.+..++++...+. .|+.|+- .....+..+. .-..+..+
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 76542 11221 123455789999999887887666554 5555551 1111122221 12357899
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCC---------CCEEEEEEcCCCCEEEEEeCCeEEEEEc
Q 003279 686 RFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHK---------NQVHSVCWNTSGEYLASVSDELVRVWSI 749 (834)
Q Consensus 686 ~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h~---------~~I~sl~~spdg~~LasgsDg~I~IwDl 749 (834)
+++|..+.+++.+. ...|.++|.... .+..+.-.. .....|+|+++|++++++-.+.+++|.-
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence 99998887777766 478889997744 444433221 2568999999998666654666776653
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.5e-05 Score=94.52 Aligned_cols=192 Identities=10% Similarity=0.031 Sum_probs=115.5
Q ss_pred CeEEEEEC-CCCCEEEEEeC-CC----eEEEEecCCC-CceeeeeccCCCCeEEEEEccCCCcEEEEEeCC----CcEEE
Q 003279 596 WITDVRFS-PSLSRLATSSA-DR----TVRVWDTENP-DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRY 664 (834)
Q Consensus 596 ~I~~l~fs-pdg~~Latgs~-Dg----~I~IWDl~s~-~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D----g~I~l 664 (834)
.+...+|+ |||++||.+.. +| .|+++|+.++ ......+. .....++|+||++.++++...+ ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 99998886543 22 5999999987 52111111 1235688999998888776532 36888
Q ss_pred EECCCCce--eeEeec--CCCeeEEEEecCCCEEEEEEcC---CeEEEEECCCC--eE-EEEE-eCCCCCEEEEEEcCCC
Q 003279 665 WSINNGSC--AGVFKC--QSGATQMRFQPRLGRILAAAIE---NYISILDVETQ--VC-RLKL-QGHKNQVHSVCWNTSG 733 (834)
Q Consensus 665 wDl~s~~~--i~~~~~--~~~i~~l~~sp~g~~ll~~s~d---g~I~iwDl~t~--~~-~~~l-~~h~~~I~sl~~spdg 733 (834)
+++.++.. ...+.. ......+.|+|++++|+....+ ..|+++|+.++ .. +..+ ........++.|+.++
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~ 331 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS 331 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence 99987642 233322 2345678999999998887743 47899999875 22 1233 3344555666665444
Q ss_pred CEEEEEe-C--C--eEEEEEcCCCCCceeEEEeecCCC--ceEEEEEeCCCCEEEE-EEcCC--eEEEEEC
Q 003279 734 EYLASVS-D--E--LVRVWSIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLV-IGCYE--TLELWNM 794 (834)
Q Consensus 734 ~~Lasgs-D--g--~I~IwDl~s~~~~~~i~~~~~~~~--~I~svafspdg~~L~s-gs~dg--~I~Iwdl 794 (834)
.+++.+. + + .|.++|+.+......+ +..+.. .+..+.+. +..|++ ...++ .|+++++
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~--li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHV--LVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTSTTCCCCE--EECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEEC
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCcccceee--EECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEec
Confidence 4444444 4 2 6777787642111110 222222 34444444 455544 45555 5777786
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00032 Score=78.19 Aligned_cols=219 Identities=9% Similarity=0.020 Sum_probs=143.6
Q ss_pred EEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC----ceeeEee-cCCCe
Q 003279 608 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK-CQSGA 682 (834)
Q Consensus 608 ~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~----~~i~~~~-~~~~i 682 (834)
+|+.+ ....|+..++..... ..+......+..|+|++.+..++++-...+.|+.+++... .....+. .....
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~--~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred eeEEe-ccceeEEEccCCcce--eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 44444 346789999886543 3333445678999999987777777777889999998752 2222332 23457
Q ss_pred eEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeE
Q 003279 683 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECI 758 (834)
Q Consensus 683 ~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i 758 (834)
..+++.+.++.|+.+.. .+.|.++|++.......+.........|+++|.+.+|+.+. .+.|...++.... ..
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~---~~ 238 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IY 238 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS---CE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc---cE
Confidence 88999986677766665 58999999987655555554455688999999776666655 3678888887542 22
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEecc---CCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 759 HELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 759 ~~~~~~~~~I~svafspdg~~L~sgs~-dg~I~Iwdl~~~~~~~l~~---h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
..+...-.....+++++++..|+.+.. .+.|..+|+.......+.. ......+|++.. +.++++-...+.|..+
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~-~~lywtd~~~~~V~~~ 316 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSA 316 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEET-TEEEEEESSSCSEEEE
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeC-CEEEEecCCCCeEEEE
Confidence 222233456789999998888888865 4589999997765443322 234566777742 3444454455556544
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00022 Score=77.04 Aligned_cols=216 Identities=9% Similarity=0.016 Sum_probs=139.3
Q ss_pred CCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCcee-eEee-cCCCeeEEEEecCC
Q 003279 614 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFK-CQSGATQMRFQPRL 691 (834)
Q Consensus 614 ~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i-~~~~-~~~~i~~l~~sp~g 691 (834)
....|+.++++...............+..++|++.+..++++-...+.|..+++..+... ..+. .-.....+++.+.+
T Consensus 11 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 11 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp CEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred ccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 356799999987542222222223457789999877778777777889999999866422 2222 22456789999877
Q ss_pred CEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003279 692 GRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNK 767 (834)
Q Consensus 692 ~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 767 (834)
+.|+.+.. .+.|.++++........+.........++++|.+.+|+.+. .+.|..+++.... ........-..
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~~~~~l~~ 167 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS---RFIIINSEIYW 167 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS---CEEEECSSCSC
T ss_pred CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC---eEEEEECCCCC
Confidence 77766654 57999999876543333334456678999999766666555 3588888876432 11112223455
Q ss_pred eEEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEec-cCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 768 FHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 768 I~svafspdg~~L~sgs~-dg~I~Iwdl~~~~~~~l~-~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
...++|++++..|+.+.. .+.|..+|+.......+. ........+++.. +.++++-...+.|..+
T Consensus 168 Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~ 234 (318)
T 3sov_A 168 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILAC 234 (318)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred ccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEE
Confidence 789999998888887765 458999999765443332 2445667787753 3344444444555543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.35 E-value=0.0004 Score=84.11 Aligned_cols=230 Identities=8% Similarity=-0.033 Sum_probs=149.8
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEecCCCC---ceeeeeccCCCCeE
Q 003279 566 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPD---YSLRTFTGHSTTVM 641 (834)
Q Consensus 566 ~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl~s~~---~~i~~~~~h~~~V~ 641 (834)
+|+.+. ...|+..++........+. ....+..|+|.+....| ++-...+.|+.+++.... .....+........
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred cccccc-ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 444443 4578888887665554444 44567899999855544 455556789999987531 11223332445677
Q ss_pred EEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEcC--CeEEEEECCCCeEEEEEe
Q 003279 642 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE--NYISILDVETQVCRLKLQ 718 (834)
Q Consensus 642 sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~d--g~I~iwDl~t~~~~~~l~ 718 (834)
.|++.+.+..|+++-...+.|.+.++........+. .......|+++|.+++|+.+... +.|.+.++........+.
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 899998888888888888999999998655444443 23458899999988888887753 689999997655544444
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECC
Q 003279 719 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMT 795 (834)
Q Consensus 719 ~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d-g~I~Iwdl~ 795 (834)
..-.....|++++.+..|+.+. .+.|.++++..... ..+............+++. +.+|+.+... +.|...|..
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~ 631 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 631 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCC
Confidence 4446789999998777777766 66899999875422 2222111122334556654 3466666654 588888876
Q ss_pred CCeEE
Q 003279 796 ENKTL 800 (834)
Q Consensus 796 ~~~~~ 800 (834)
+++.+
T Consensus 632 tG~~~ 636 (791)
T 3m0c_C 632 TGSDV 636 (791)
T ss_dssp TCCCC
T ss_pred CCcce
Confidence 66433
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00021 Score=80.56 Aligned_cols=235 Identities=10% Similarity=0.060 Sum_probs=141.3
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC---C-eEEEEecCCCC
Q 003279 554 KVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---R-TVRVWDTENPD 627 (834)
Q Consensus 554 ~V~sl~fSpd--g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g-~I~IWDl~s~~ 627 (834)
.-.+++|+|+ +..|+.+...+.|+.+|..++...... .......+|+|+++++++++.... . .+..++.....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 4568999985 445666655589999999887766554 345568999999999944444321 1 23334433221
Q ss_pred ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceee-EeecC--CCeeEEEEecCCCEEEEEEc-CCeE
Q 003279 628 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKCQ--SGATQMRFQPRLGRILAAAI-ENYI 703 (834)
Q Consensus 628 ~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~-~~~~~--~~i~~l~~sp~g~~ll~~s~-dg~I 703 (834)
.....+. .......++++|++..++++-..++.|+.+|..++.... .+... .....++|+|++++|+++.. .+.|
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I 297 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI 297 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence 1011111 234456788999545566666667889999998776632 22221 22346999999997777665 5789
Q ss_pred EEEECC--CCeE--EEEEeCC---------------CCCEEEEEE---------cCCCCEEEEEe-CCeEEEEEcCCCCC
Q 003279 704 SILDVE--TQVC--RLKLQGH---------------KNQVHSVCW---------NTSGEYLASVS-DELVRVWSIGSGSK 754 (834)
Q Consensus 704 ~iwDl~--t~~~--~~~l~~h---------------~~~I~sl~~---------spdg~~Lasgs-Dg~I~IwDl~s~~~ 754 (834)
..+|.. ++.. ...+.+. -.....+++ .++|.++++-. .+.|++++. ++
T Consensus 298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G-- 374 (433)
T 4hw6_A 298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG-- 374 (433)
T ss_dssp EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS--
T ss_pred EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC--
Confidence 998865 2311 1112111 124667999 67777666655 678999884 33
Q ss_pred ceeEEEeecC------------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 003279 755 GECIHELSCT------------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 795 (834)
Q Consensus 755 ~~~i~~~~~~------------------~~~I~svafspdg~~L~sgs~-dg~I~Iwdl~ 795 (834)
. +..+.+. -.....++++|....|+++.. ++.|+.++++
T Consensus 375 -~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 -R-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp -E-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -C-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 2 2222211 123677888843334555544 4578777654
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00035 Score=79.59 Aligned_cols=233 Identities=12% Similarity=0.082 Sum_probs=138.2
Q ss_pred CeEEEEECC-CCCEEEEEeC-CCeEEEEecCCCCceeeeeccC----CCCeEEEEE-------ccCCCcEEEEEeCCC--
Q 003279 596 WITDVRFSP-SLSRLATSSA-DRTVRVWDTENPDYSLRTFTGH----STTVMSLDF-------HPSKEDLLCSCDNNS-- 660 (834)
Q Consensus 596 ~I~~l~fsp-dg~~Latgs~-Dg~I~IWDl~s~~~~i~~~~~h----~~~V~sl~f-------spdg~~llasgs~Dg-- 660 (834)
....|+|+| +...|+.+.. .+.|++.|+..+.. ..+..- ......|+| ++++..++++...++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v--~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRML--SSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEE--EEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEE--EEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence 467899998 3444555444 46788888886543 333221 235889999 999887776655442
Q ss_pred ----cEEEEECCC-Ccee-----eEeecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECC-------CCeE---------
Q 003279 661 ----EIRYWSINN-GSCA-----GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVE-------TQVC--------- 713 (834)
Q Consensus 661 ----~I~lwDl~s-~~~i-----~~~~~~~~i~~l~~sp~g~~ll~~s-~dg~I~iwDl~-------t~~~--------- 713 (834)
.|.+++... +... ..+........++++|+++.|+++. .++.|+.||+. ++..
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred ccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 366776443 2221 2222234566788999766666665 46789999987 4442
Q ss_pred -----EEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcee--EEEeecC---------------CCceE
Q 003279 714 -----RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGEC--IHELSCT---------------GNKFH 769 (834)
Q Consensus 714 -----~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~--i~~~~~~---------------~~~I~ 769 (834)
+..+ +.......|+|+|+|++|+.+. ...|+.++...... .. ...+.+. -....
T Consensus 298 g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~-~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 298 NTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK-EFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp TTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT-EECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred cccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc-eecccEEecCCCCCCcccCCcccccccCCCe
Confidence 2222 2334568999999999766665 66898876643211 11 0111111 01234
Q ss_pred -EEEEe-------CCCCEEEEEEcCCeEEEEECCCCeEEEeccC------------------------CCCeEEEEEeCC
Q 003279 770 -SCVFH-------PTFPSLLVIGCYETLELWNMTENKTLTLSAH------------------------DKLVSSLAASTV 817 (834)
Q Consensus 770 -svafs-------pdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h------------------------~~~V~~lafspd 817 (834)
.++.. .++.++++=...+.|+.++ .++.+.++.+. -.....|+++++
T Consensus 376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~ 454 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV 454 (496)
T ss_dssp EEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred EEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence 45554 4455444444556999999 45665554322 123678999997
Q ss_pred -CCEEEEEecCCcEEEe
Q 003279 818 -NGMVASASHDKCVKIW 833 (834)
Q Consensus 818 -g~~LaSgs~DG~I~IW 833 (834)
+.++++=.....|+.+
T Consensus 455 ~g~lyVaD~~N~rIrki 471 (496)
T 3kya_A 455 KEMFYVHDQVGHTIRTI 471 (496)
T ss_dssp TTEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCCEEEEE
Confidence 6555555556677765
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.19 E-value=5.1e-05 Score=90.35 Aligned_cols=228 Identities=7% Similarity=-0.032 Sum_probs=130.4
Q ss_pred EEEECC-CCCEEEEEeCCC-----------eEEEEecCCCCceee-ee-ccCCCCeEEEEEccCCCcEEEEEe-CCCcEE
Q 003279 599 DVRFSP-SLSRLATSSADR-----------TVRVWDTENPDYSLR-TF-TGHSTTVMSLDFHPSKEDLLCSCD-NNSEIR 663 (834)
Q Consensus 599 ~l~fsp-dg~~Latgs~Dg-----------~I~IWDl~s~~~~i~-~~-~~h~~~V~sl~fspdg~~llasgs-~Dg~I~ 663 (834)
.+++.+ ++++++.|+.+. .+.+||+.+...... .. ..+.....++++..++. +++.|+ .+..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCceE
Confidence 566667 888888887643 688999988764322 12 12333344567777766 555666 456899
Q ss_pred EEECCCCceeeEeec--CCCeeEEEEecCCCEEEEEE-cC-----CeEEEEECCCCeEEEEE----eCCCCCEEEEEEcC
Q 003279 664 YWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAA-IE-----NYISILDVETQVCRLKL----QGHKNQVHSVCWNT 731 (834)
Q Consensus 664 lwDl~s~~~i~~~~~--~~~i~~l~~sp~g~~ll~~s-~d-----g~I~iwDl~t~~~~~~l----~~h~~~I~sl~~sp 731 (834)
+||..+++....-.. ...-.++++.++++.+++|+ .+ ..+.+||..+.+-...- ......-....+..
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 999987765443222 22234566667889888888 34 57999999887543320 00000000011223
Q ss_pred CCCEEEEEe----------CCeEEEEEcCCCCCceeEEEeec------CCCceEEEEEeC-CCCEEEEEEcCC-------
Q 003279 732 SGEYLASVS----------DELVRVWSIGSGSKGECIHELSC------TGNKFHSCVFHP-TFPSLLVIGCYE------- 787 (834)
Q Consensus 732 dg~~Lasgs----------Dg~I~IwDl~s~~~~~~i~~~~~------~~~~I~svafsp-dg~~L~sgs~dg------- 787 (834)
++..++.++ ...+.+||..+..-......... ....-.++.|.. +++.+++|+.++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 344434333 34678899887632111111111 011224445544 566666666432
Q ss_pred ----eEEEEECCCCeEEEec---cCCCC-eEEEEEeCCCCEEEEEecC
Q 003279 788 ----TLELWNMTENKTLTLS---AHDKL-VSSLAASTVNGMVASASHD 827 (834)
Q Consensus 788 ----~I~Iwdl~~~~~~~l~---~h~~~-V~~lafspdg~~LaSgs~D 827 (834)
.|.+||..+.....+. .+... -.+++..|++++++.|+.+
T Consensus 429 ~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 429 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp CCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 6888998887766443 12222 3445667899999999865
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0015 Score=79.06 Aligned_cols=216 Identities=9% Similarity=0.028 Sum_probs=140.1
Q ss_pred EEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC----ceeeEee-cCCCe
Q 003279 608 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK-CQSGA 682 (834)
Q Consensus 608 ~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~----~~i~~~~-~~~~i 682 (834)
+|+.+ ....|+..++..... ..+......+..|+|++....++++-...+.|+.+++... .....+. .....
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~--~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCC--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred ccccc-cccceeEeeccCCcc--eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 34333 455688888876543 3333345678899999877778777777789999998753 2223332 23457
Q ss_pred eEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEEcCCCCCceeE
Q 003279 683 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECI 758 (834)
Q Consensus 683 ~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--D-g~I~IwDl~s~~~~~~i 758 (834)
..|++.+.++.|+++.. .+.|.++++........+.........|+++|.+.+|+.+. . +.|.+.++... ...
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~---~~~ 550 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIY 550 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEE
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC---ceE
Confidence 78999988877777765 57999999987655444444556689999999866666655 3 67888888754 222
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEecc---CCCCeEEEEEeCCCCEEEEEe-cCCcEE
Q 003279 759 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASAS-HDKCVK 831 (834)
Q Consensus 759 ~~~~~~~~~I~svafspdg~~L~sgs~d-g~I~Iwdl~~~~~~~l~~---h~~~V~~lafspdg~~LaSgs-~DG~I~ 831 (834)
..+.........|++++.+..|+++... +.|..+++.......+.. .-....+|++.. ..|+.+. ..+.|.
T Consensus 551 ~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~--~~lYwtD~~~~~I~ 626 (791)
T 3m0c_C 551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIF 626 (791)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEE
T ss_pred EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC--CEEEEEECCCCEEE
Confidence 2233334678899999888888887654 489999997765543332 223455666643 3444443 334443
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00055 Score=78.02 Aligned_cols=240 Identities=14% Similarity=0.128 Sum_probs=144.7
Q ss_pred eEEEEEcC-CCCEEEEEe-CCCcEEEEeCCCCeEEEEeccC---CCCeEEEEE-------CCCCCEEEEEeCCC------
Q 003279 555 VESCHFSP-DGKLLATGG-HDKKAVLWCTESFTVKSTLEEH---TQWITDVRF-------SPSLSRLATSSADR------ 616 (834)
Q Consensus 555 V~sl~fSp-dg~~Lasgs-~Dg~I~IWd~~t~~~~~~l~~h---~~~I~~l~f-------spdg~~Latgs~Dg------ 616 (834)
-..|+|+| ++..|+++. ..+.|++.|.+++.....+... ......|+| ++++..|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 56899998 344455444 3467889998887776555432 235889999 99999777766554
Q ss_pred -eEEEEecCC-CCce----eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC-------CCce-----------
Q 003279 617 -TVRVWDTEN-PDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-------NGSC----------- 672 (834)
Q Consensus 617 -~I~IWDl~s-~~~~----i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~-------s~~~----------- 672 (834)
.|.+++... +... ...+.. -.....++++|++..|+++...++.|..+|+. ++..
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred ceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 266665443 1221 012221 12456788999777788888888899999997 5543
Q ss_pred e-eEeec--CCCeeEEEEecCCCEEEEEEc-CCeEEEEEC--CCCeE--EEEEeCC---C------------CCEE-EEE
Q 003279 673 A-GVFKC--QSGATQMRFQPRLGRILAAAI-ENYISILDV--ETQVC--RLKLQGH---K------------NQVH-SVC 728 (834)
Q Consensus 673 i-~~~~~--~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl--~t~~~--~~~l~~h---~------------~~I~-sl~ 728 (834)
. ..+.. ......++|+|+++.|+++.. .+.|+.+|. ..+.. ...+-+. . .... .++
T Consensus 300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~ 379 (496)
T 3kya_A 300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVF 379 (496)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEE
T ss_pred cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEE
Confidence 1 12222 234678999999997666665 578888654 44332 0122111 1 1234 455
Q ss_pred Ec-------CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC------------------------CCceEEEEEeCC
Q 003279 729 WN-------TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT------------------------GNKFHSCVFHPT 776 (834)
Q Consensus 729 ~s-------pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~------------------------~~~I~svafspd 776 (834)
.. .++.++++-. ...|+.++. ++ .+.++.+. -.....++++++
T Consensus 380 vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G----~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~ 454 (496)
T 3kya_A 380 VKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG----IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV 454 (496)
T ss_dssp EECTTCCSSCCEEEEEEEGGGTEEEEECT-TC----BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred EccccccccCCCeEEEEECCCCEEEEEeC-CC----CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence 54 4556555555 779999983 33 22233221 123567888887
Q ss_pred CCEEEEEEc-CCeEEEEECCCCeEE
Q 003279 777 FPSLLVIGC-YETLELWNMTENKTL 800 (834)
Q Consensus 777 g~~L~sgs~-dg~I~Iwdl~~~~~~ 800 (834)
...|+++.. +..|+.++++.....
T Consensus 455 ~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 455 KEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp TTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCEEEEEeCCCCEEEEEECCCCccc
Confidence 334555554 458888887765543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=0.0018 Score=76.54 Aligned_cols=219 Identities=10% Similarity=0.007 Sum_probs=145.5
Q ss_pred EEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC-CCeeEEE
Q 003279 608 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMR 686 (834)
Q Consensus 608 ~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~-~~i~~l~ 686 (834)
+|+.+ ....|+..+++............-..+..|+|++.+..++++-..++.|..+++........+... .....++
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 44444 566899999986543222222233568899999988888878777899999999865444444432 3577899
Q ss_pred EecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeEEEee
Q 003279 687 FQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELS 762 (834)
Q Consensus 687 ~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~ 762 (834)
+.+.++.|+.+.. .+.|.+.++........+...-.....|+++|...+|+.+. .+.|...++..... .. +.
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~---l~ 162 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TT---LV 162 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EE---EE
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EE---EE
Confidence 9988787777765 57899999976543333334445678999999655565555 45788888765432 22 22
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 763 CTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 763 ~~~~~I~svafspdg~~L~sgs~d-g~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
........+++++++..|+.+... +.|..+|+.......+........+|++.. +.++++-...+.|..
T Consensus 163 ~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~ 232 (628)
T 4a0p_A 163 PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIER 232 (628)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEE
Confidence 245678899999988888887664 589999997754443334445567788765 334444334555554
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0012 Score=78.03 Aligned_cols=222 Identities=7% Similarity=-0.011 Sum_probs=138.0
Q ss_pred CCcEEEEeCCCCe-EEEEeccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCC
Q 003279 573 DKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 650 (834)
Q Consensus 573 Dg~I~IWd~~t~~-~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~ 650 (834)
...|++.|+.... ....+...-..+..++|++.+..|+.+. ..+.|..++++........+...-.....+++.+.+.
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~ 96 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 96 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence 4678888887643 2222233445678999998766666554 4678999998754321223333335788999999878
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEe-ecCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEEeCCCCCEEEE
Q 003279 651 DLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGHKNQVHSV 727 (834)
Q Consensus 651 ~llasgs~Dg~I~lwDl~s~~~i~~~-~~~~~i~~l~~sp~g~~ll~~s~--dg~I~iwDl~t~~~~~~l~~h~~~I~sl 727 (834)
.++++-...+.|.+.++........+ ..-.....++++|.+++|+.+.. .+.|...++............-.....|
T Consensus 97 ~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Gl 176 (619)
T 3s94_A 97 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 176 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEE
Confidence 78878777899999999865433333 22345778999998888888775 3678888877543333333345578899
Q ss_pred EEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCeE
Q 003279 728 CWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKT 799 (834)
Q Consensus 728 ~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~-dg~I~Iwdl~~~~~ 799 (834)
++++++..|+.+. .+.|..+|+........+ .........+++..+ .|+.+.. .+.|...|..+++.
T Consensus 177 ald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~---~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 177 TLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV---KGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp EEETTTTEEEEEETTTCCEEEESSSCCEEC------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCC
T ss_pred EEEccCCEEEEEeCCCCeEEEecCCCCccEEEE---eCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcc
Confidence 9999877777766 668999988754221111 111222345666555 5665554 45898889877653
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0055 Score=72.33 Aligned_cols=224 Identities=8% Similarity=-0.021 Sum_probs=150.9
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEec-cCCCCeEEEEECCCCCEEEE-EeCCCeEEEEecCCCCceeeeeccCCCCeEEE
Q 003279 566 LLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLAT-SSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 643 (834)
Q Consensus 566 ~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~I~~l~fspdg~~Lat-gs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl 643 (834)
+|+.+ ....|+..++++......+. ..-..+..|+|++.+..|+. -..++.|+.++++.... ...+.........|
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVEFGLDYPEGM 85 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEeCCCCCcceE
Confidence 55554 35789999998765443332 22346789999986655554 45678999999875432 22233223467789
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCceeeEe-ecCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEEeCC
Q 003279 644 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGH 720 (834)
Q Consensus 644 ~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~-~~~~~i~~l~~sp~g~~ll~~s~--dg~I~iwDl~t~~~~~~l~~h 720 (834)
++.+.+..++++-...+.|.+.++........+ ..-.....++++|..+.|+.+.. .+.|...++........+. .
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~ 164 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-N 164 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-S
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-C
Confidence 998887878877777889999999755433333 22355789999998888888774 4688888887554333333 4
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCC
Q 003279 721 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTEN 797 (834)
Q Consensus 721 ~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~-dg~I~Iwdl~~~ 797 (834)
-.....|++++++..|+.+. .+.|..+|+..... +. +.........+++.. ..|+.+.. .+.|...|..++
T Consensus 165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v---~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EV---IADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE---EEECCSCEEEEEEET--TEEEEEETTTTEEEEEETTTC
T ss_pred CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EE---eeccCCCceEEEEEC--CEEEEecCCCCEEEEEECCCC
Confidence 56788999999887777776 67999999976532 22 223334456777765 35666665 568999997665
Q ss_pred e
Q 003279 798 K 798 (834)
Q Consensus 798 ~ 798 (834)
+
T Consensus 239 ~ 239 (628)
T 4a0p_A 239 Q 239 (628)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0009 Score=73.19 Aligned_cols=225 Identities=8% Similarity=0.065 Sum_probs=122.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--EEEec---cCCCCeEEEEECCC---CCEEEEEeC-C-----CeE
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE---EHTQWITDVRFSPS---LSRLATSSA-D-----RTV 618 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~--~~~l~---~h~~~I~~l~fspd---g~~Latgs~-D-----g~I 618 (834)
..-..++|.|||++++ +..+|.|++++ +++. +..+. ........|+|+|+ +..|+++.. . ..|
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 3467899999998554 55679999998 4432 22221 22356889999998 555554433 2 678
Q ss_pred EEEecCCCCc-----eeeeec---cCCCCeEEEEEccCCCcEEEEEeC-------------CCcEEEEECCCC-------
Q 003279 619 RVWDTENPDY-----SLRTFT---GHSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNG------- 670 (834)
Q Consensus 619 ~IWDl~s~~~-----~i~~~~---~h~~~V~sl~fspdg~~llasgs~-------------Dg~I~lwDl~s~------- 670 (834)
..|+...... .+..+. ........|+|.|+|. ++++.+. .|.|..++....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 8888774321 111122 1112346899999985 4444332 256666666530
Q ss_pred -----ceeeEee-cCCCeeEEEEecCCCEEEEEEcC-Ce--------EEEEECCC----------------CeEEEEEeC
Q 003279 671 -----SCAGVFK-CQSGATQMRFQPRLGRILAAAIE-NY--------ISILDVET----------------QVCRLKLQG 719 (834)
Q Consensus 671 -----~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~d-g~--------I~iwDl~t----------------~~~~~~l~~ 719 (834)
.....+. .......++|+|+.+.|+++... +. |.+..... ..++..+.
T Consensus 187 ~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~- 265 (352)
T 2ism_A 187 LGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP- 265 (352)
T ss_dssp TTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-
T ss_pred cCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-
Confidence 1111121 12336678999954555555443 22 33332111 01222222
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc---eeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003279 720 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG---ECIHELSCTGNKFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 720 h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~---~~i~~~~~~~~~I~svafspdg~~L~sg 783 (834)
+......++| .+|.++++.. .+.|...++...... .....+......+..+++.|||..+++.
T Consensus 266 ~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 266 QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 2234567777 4566555544 668888887654310 0112222234678899999999755444
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0066 Score=71.54 Aligned_cols=276 Identities=8% Similarity=-0.015 Sum_probs=160.4
Q ss_pred CCeEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC--CCeEEEEecCCCCce
Q 003279 553 SKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYS 629 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasg-s~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~--Dg~I~IWDl~s~~~~ 629 (834)
.....+++.+.+..|+.+ ...+.|.+.+++.......+...-.....|++.|.+.+|+.+.. .+.|...+++....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~- 162 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR- 162 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-
Confidence 468899999966655554 45689999998764433333344456789999997666666554 35677777764332
Q ss_pred eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEEEc-CCeEEEEE
Q 003279 630 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI-ENYISILD 707 (834)
Q Consensus 630 i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwD 707 (834)
.......-.....|++++++..++++-...+.|..+|+.......... .......+++..+ .++.+.. .+.|...|
T Consensus 163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d 240 (619)
T 3s94_A 163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACN 240 (619)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEE
T ss_pred EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEE
Confidence 222223345678999999878777776777889999997544333222 1122345566544 5665554 57888888
Q ss_pred CCCCeEEEEEeC-----------CC--------------CCEEEEEE-----------cC-------CC--------CEE
Q 003279 708 VETQVCRLKLQG-----------HK--------------NQVHSVCW-----------NT-------SG--------EYL 736 (834)
Q Consensus 708 l~t~~~~~~l~~-----------h~--------------~~I~sl~~-----------sp-------dg--------~~L 736 (834)
..+++....+.. |. +....+|+ .| |+ .+|
T Consensus 241 ~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~L 320 (619)
T 3s94_A 241 KYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELL 320 (619)
T ss_dssp SSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEE
T ss_pred CCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEE
Confidence 876643322211 10 00111111 11 11 245
Q ss_pred EEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEec-cCCCCeEEEEE
Q 003279 737 ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTLS-AHDKLVSSLAA 814 (834)
Q Consensus 737 asgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~-dg~I~Iwdl~~~~~~~l~-~h~~~V~~laf 814 (834)
+.+..+.|+..++...........+ ..-..+..++|++.+..|+.+.. .+.|+.+++.......+. ..-..+..+++
T Consensus 321 l~~~~~~i~~i~l~~~~~~~~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAv 399 (619)
T 3s94_A 321 LLARRTDLRRISLDTPDFTDIVLQL-EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAV 399 (619)
T ss_dssp EEEESSCEEEEESSSTTCCCEECCC-SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred EEEcccceEEEecCCCccceeEEec-cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEE
Confidence 5555566777777655321111111 12345778999997777777765 568999998875443332 33356778999
Q ss_pred eCCCCEEEEE-ecCCcEEE
Q 003279 815 STVNGMVASA-SHDKCVKI 832 (834)
Q Consensus 815 spdg~~LaSg-s~DG~I~I 832 (834)
...++.|+.+ +..+.|.+
T Consensus 400 D~~~~~lY~tD~~~~~I~v 418 (619)
T 3s94_A 400 DWVARNLYWTDTGTDRIEV 418 (619)
T ss_dssp ETTTTEEEEEETTTTEEEE
T ss_pred ecccCcEEEEeCCCCcEEE
Confidence 8755544443 34455544
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.97 E-value=1.5e-05 Score=95.62 Aligned_cols=226 Identities=8% Similarity=-0.022 Sum_probs=137.3
Q ss_pred CCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEecCCC---CceeeeeccCCCCeEEEEEccC
Q 003279 573 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPS 648 (834)
Q Consensus 573 Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~s~---~~~i~~~~~h~~~V~sl~fspd 648 (834)
.+.|++.++.+......+.. ...+..|+|.+.+..|+.+. ..+.|+.+++... ......+.........|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 46788888887665544433 34567899998766666554 4678999998751 1111222212234567888876
Q ss_pred CCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcC--CeEEEEECCCCeEEEEEeCCCCCEE
Q 003279 649 KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE--NYISILDVETQVCRLKLQGHKNQVH 725 (834)
Q Consensus 649 g~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~d--g~I~iwDl~t~~~~~~l~~h~~~I~ 725 (834)
+..|+++-...+.|.++++........+.. ......++++|.+++|+.+... +.|.++++........+...-....
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~Pn 543 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 543 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence 666776666678999999886554443332 2456788999987777766542 6888888764322222222234567
Q ss_pred EEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEe
Q 003279 726 SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTL 802 (834)
Q Consensus 726 sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs-~dg~I~Iwdl~~~~~~~l 802 (834)
.|+|++++..|+.+. .+.|.++++..... ..+............+++..+ .|+++. ..+.|..++..+++.+..
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~~ 620 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNL 620 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEEC
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceEE
Confidence 899999866665555 66899999875321 222111111223345555544 455554 456899999888776643
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0014 Score=70.71 Aligned_cols=231 Identities=11% Similarity=0.036 Sum_probs=130.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec---cCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC-CC
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PD 627 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~---~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s-~~ 627 (834)
...+.+|.|++ +..++ ++.++.|+. ..+.++.-..+. .+...+..|.+.+++..++++ .++.|. .... +.
T Consensus 79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~--~S~DgG~ 152 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIY--RTKDSGK 152 (327)
T ss_dssp CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEE--EESSTTS
T ss_pred CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEE--EEcCCCC
Confidence 34588899986 44444 455665544 333333333322 234567888887776666555 456443 2222 22
Q ss_pred ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEE-EEC--CCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003279 628 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY-WSI--NNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 704 (834)
Q Consensus 628 ~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~l-wDl--~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~ 704 (834)
.-......+...+..+++.+++. +++++. +|.|.. +|- .+.+.+. ......+..+.+.+++. +++++.+|.++
T Consensus 153 tW~~~~~~~~~~~~~~~~~~~~~-~~~~g~-~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~-~~~~~~~G~~~ 228 (327)
T 2xbg_A 153 NWQALVQEAIGVMRNLNRSPSGE-YVAVSS-RGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGR-LWMIVNGGKIA 228 (327)
T ss_dssp SEEEEECSCCCCEEEEEECTTSC-EEEEET-TSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSC-EEEEETTTEEE
T ss_pred CCEEeecCCCcceEEEEEcCCCc-EEEEEC-CCcEEEEeCCCCCceeECC-CCCCCccceeEECCCCC-EEEEeCCceEE
Confidence 11222234556789999998865 554544 555444 332 2222221 12345678888888865 55666778877
Q ss_pred EEECCCCeEEEEEeC----CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003279 705 ILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 780 (834)
Q Consensus 705 iwDl~t~~~~~~l~~----h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L 780 (834)
+.+...++.-..+.. +...+.++.+.+++.+++++.++.| ++..+.+.....+.........+.++.|.+++ .+
T Consensus 229 ~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~ 306 (327)
T 2xbg_A 229 FSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QG 306 (327)
T ss_dssp EEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EE
T ss_pred EecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ce
Confidence 765333433322221 2235889999998888888888877 45555553222221111123567888887554 47
Q ss_pred EEEEcCCeEEEEEC
Q 003279 781 LVIGCYETLELWNM 794 (834)
Q Consensus 781 ~sgs~dg~I~Iwdl 794 (834)
++++.+|.|..++-
T Consensus 307 ~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 307 FILGQKGILLRYVT 320 (327)
T ss_dssp EEECSTTEEEEECC
T ss_pred EEEcCCceEEEEcC
Confidence 77888888777653
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.015 Score=70.11 Aligned_cols=263 Identities=11% Similarity=0.080 Sum_probs=155.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceee
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 631 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~ 631 (834)
...|.++....+| .|.+|+.+| +.+||..+.+...........|.++.. .++ .|..++.+ -|..||..+... .
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~--~ 134 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKL--T 134 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCE--E
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeE--E
Confidence 3568998888776 566676654 789998876544311112345777765 344 56666666 588888876543 2
Q ss_pred eec-----cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec------CCCeeEEEEecCCCEEEEEEcC
Q 003279 632 TFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 632 ~~~-----~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~------~~~i~~l~~sp~g~~ll~~s~d 700 (834)
.+. .....|.++....++. +. .++.+ -|..+|..+++....... ...|.++....+++.|.+++.
T Consensus 135 ~~~~~~~~l~~~~i~~i~~d~~g~-lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~- 210 (758)
T 3ott_A 135 SFDTRRNGLPNNTIYSIIRTKDNQ-IY-VGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE- 210 (758)
T ss_dssp EECHHHHCCSCSCEEEEEECTTCC-EE-EEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-
T ss_pred EeccCCCCcCCCeEEEEEEcCCCC-EE-EEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-
Confidence 221 1235688888877765 33 34444 578888877654322111 123778888877777677764
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEe-----ecCCCceEEEEEeC
Q 003279 701 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHP 775 (834)
Q Consensus 701 g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~-----~~~~~~I~svafsp 775 (834)
+.|..||..+++...........|.++....+|.+.+.. ++-+.+++..+... ..+... ......|.++....
T Consensus 211 ~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~ 288 (758)
T 3ott_A 211 GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DNGLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQ 288 (758)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TTEEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECT
T ss_pred CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CCceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcC
Confidence 578899988775432211123458888888888877655 55688888766521 111100 01234688888888
Q ss_pred CCCEEEEEEcCCeEEEEECCCC-eEEEec-----cCCCCeEEEEEeCCCCEEEEEecCCcE
Q 003279 776 TFPSLLVIGCYETLELWNMTEN-KTLTLS-----AHDKLVSSLAASTVNGMVASASHDKCV 830 (834)
Q Consensus 776 dg~~L~sgs~dg~I~Iwdl~~~-~~~~l~-----~h~~~V~~lafspdg~~LaSgs~DG~I 830 (834)
+|. |.+|+..| |.++..... +..... .....|.++....+|.+.+. +.+|.+
T Consensus 289 ~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl~ 346 (758)
T 3ott_A 289 EHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANGLI 346 (758)
T ss_dssp TCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTEEE
T ss_pred CCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCcce
Confidence 776 66666666 555433221 111111 12346888888887776554 355543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0014 Score=71.53 Aligned_cols=196 Identities=8% Similarity=0.049 Sum_probs=113.4
Q ss_pred CeEEEEECCCCCEEEEE------------eCCCeEEEEecCCCCceee--eecc-----CCCCeEEEEEcc--CCC-cEE
Q 003279 596 WITDVRFSPSLSRLATS------------SADRTVRVWDTENPDYSLR--TFTG-----HSTTVMSLDFHP--SKE-DLL 653 (834)
Q Consensus 596 ~I~~l~fspdg~~Latg------------s~Dg~I~IWDl~s~~~~i~--~~~~-----h~~~V~sl~fsp--dg~-~ll 653 (834)
...++...++|..++++ ..+|.|.++|+.+...... .+.+ ..-....|.+.+ ++. +++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34566666765444443 2689999999984322122 2222 224667787766 344 344
Q ss_pred EEEeC--CCcEEEEECCCC-ceee---Eeec--CCCeeEEEEecCCCEEEEEEc-----------------CCeEEEEEC
Q 003279 654 CSCDN--NSEIRYWSINNG-SCAG---VFKC--QSGATQMRFQPRLGRILAAAI-----------------ENYISILDV 708 (834)
Q Consensus 654 asgs~--Dg~I~lwDl~s~-~~i~---~~~~--~~~i~~l~~sp~g~~ll~~s~-----------------dg~I~iwDl 708 (834)
++-.. +..|.+|++... .... .+.. -...+.+.+.++|..+++... .|.|+.||.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44332 457778776543 2222 2222 234788999999876655431 245666666
Q ss_pred CCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC-CCCEEEEEEc
Q 003279 709 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLLVIGC 785 (834)
Q Consensus 709 ~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp-dg~~L~sgs~ 785 (834)
. +...... .-...+.++|+||++.|+.+. .+.|..|++...........+ ........+++.+ +|.+.+++..
T Consensus 211 ~--~~~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 211 N--DVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp T--CCEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred C--eEEEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence 4 2222222 234578999999999888776 779999999743222223333 2356678899999 5886665554
Q ss_pred CC-eEEEEECC
Q 003279 786 YE-TLELWNMT 795 (834)
Q Consensus 786 dg-~I~Iwdl~ 795 (834)
++ .|..|+..
T Consensus 287 ~g~~v~~~~P~ 297 (355)
T 3sre_A 287 NGMRIFFYDAE 297 (355)
T ss_dssp CHHHHHSCCTT
T ss_pred CceEEEEECCC
Confidence 43 44444443
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0053 Score=67.11 Aligned_cols=228 Identities=10% Similarity=0.046 Sum_probs=126.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEec---cCCCCeEEEEECCC---CCEEEEEeC----C----Ce
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLE---EHTQWITDVRFSPS---LSRLATSSA----D----RT 617 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~-~~~~l~---~h~~~I~~l~fspd---g~~Latgs~----D----g~ 617 (834)
..-..++|.|||+ |+++..+|.|++++ .+++ .+..+. ........|+|+|+ +..|+++.. + ..
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 4478899999997 45556679999997 4454 222221 22356889999997 455554433 3 57
Q ss_pred EEEEecCCCC------ce-eeeecc-CCCCeEEEEEccCCCcEEEEEeC-------------CCcEEEEECCCCc-----
Q 003279 618 VRVWDTENPD------YS-LRTFTG-HSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNGS----- 671 (834)
Q Consensus 618 I~IWDl~s~~------~~-i~~~~~-h~~~V~sl~fspdg~~llasgs~-------------Dg~I~lwDl~s~~----- 671 (834)
|..|+..... .. +..+.. .......|+|.|+|. ++++.+. .|.|..++....-
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 8888876541 11 111221 112346799999986 4444322 2456666654220
Q ss_pred --eeeEee-cCCCeeEEEEecCCCEEEEEEcCC----eEEEEECCC--------C--------eEEEEEeCCCCCEEEEE
Q 003279 672 --CAGVFK-CQSGATQMRFQPRLGRILAAAIEN----YISILDVET--------Q--------VCRLKLQGHKNQVHSVC 728 (834)
Q Consensus 672 --~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg----~I~iwDl~t--------~--------~~~~~l~~h~~~I~sl~ 728 (834)
....+. .......++|+|+.+.|+++.... .|.+..... + .++..+.........++
T Consensus 186 f~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~ 265 (354)
T 3a9g_A 186 FPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGAS 265 (354)
T ss_dssp STTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEE
T ss_pred CCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceE
Confidence 011121 234467899999545565555432 344433211 0 12223311234577888
Q ss_pred Ec-------CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-cCCCceEEEEEeCCCCEEEEE
Q 003279 729 WN-------TSGEYLASVS-DELVRVWSIGSGSKGECIHELS-CTGNKFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 729 ~s-------pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-~~~~~I~svafspdg~~L~sg 783 (834)
|. .+|.++++.. .+.|...++...........+. .....+..+++.|||..+++.
T Consensus 266 ~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 266 FVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp ECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred EECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 84 4676666555 6788888887532111112222 224578899999999644443
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.014 Score=70.16 Aligned_cols=260 Identities=11% Similarity=0.029 Sum_probs=154.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee
Q 003279 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 630 (834)
Q Consensus 552 ~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l-~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i 630 (834)
...|.||.-..+| +|..|+.+| +..||-...+..... ......|.++....++ .|..|+.+| +.+||..+.....
T Consensus 21 ~n~V~~I~qD~~G-~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~ 96 (758)
T 3ott_A 21 ASVVSCFLQDSEG-LIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ 96 (758)
T ss_dssp CCCEEEEEECTTS-CEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC
T ss_pred cceEEEEEECCCC-CEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC
Confidence 4569999999888 455666766 667775432211110 1123468888877665 566666665 7899987643211
Q ss_pred eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-----cCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003279 631 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----CQSGATQMRFQPRLGRILAAAIENYISI 705 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-----~~~~i~~l~~sp~g~~ll~~s~dg~I~i 705 (834)
........|.++.. .++ .+. .++.+ .|..||..+++...... ....|.++....++... +++. +.|..
T Consensus 97 -~~~~~~~~i~~i~~-~~g-~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~-~Gl~~ 169 (758)
T 3ott_A 97 -PETDFPTDVRTMAL-QGD-TLW-LGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIY-VGTY-NGLCR 169 (758)
T ss_dssp -CSCCCCSCEEEEEE-ETT-EEE-EEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEE-EEET-TEEEE
T ss_pred -cccCCCceEEEEEe-cCC-cEE-EEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEE-EEeC-CCHhh
Confidence 11112335777654 343 344 45544 68889988765433211 12457777777766544 4554 56888
Q ss_pred EECCCCeEEEEE-eCC----CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003279 706 LDVETQVCRLKL-QGH----KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 780 (834)
Q Consensus 706 wDl~t~~~~~~l-~~h----~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L 780 (834)
||..++...... ... ...|.++..+.++..|..++++.|..||..++.. .....+ ....|.++....+|. |
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~-~~~~~l--~~~~i~~i~~d~~g~-l 245 (758)
T 3ott_A 170 YIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGYLFQYFPSTGQI-KQTEAF--HNNSIKSLALDGNGD-L 245 (758)
T ss_dssp EETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEEEEEEEETTTTEE-EEEEEE--EEEEEEEEEECTTCC-E
T ss_pred CccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECCCCeEEcCCCCeE-EeccCC--CCCeEEEEEEcCCCC-E
Confidence 998877543221 111 2248889888877755555555688899876521 111111 234578888887776 5
Q ss_pred EEEEcCCeEEEEECCCCeEEEecc--------CCCCeEEEEEeCCCCEEEEEecCC
Q 003279 781 LVIGCYETLELWNMTENKTLTLSA--------HDKLVSSLAASTVNGMVASASHDK 828 (834)
Q Consensus 781 ~sgs~dg~I~Iwdl~~~~~~~l~~--------h~~~V~~lafspdg~~LaSgs~DG 828 (834)
.+++. +-|.+++..+++...+.. ....|.++....+|.+.+. +..|
T Consensus 246 WigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiG-T~~G 299 (758)
T 3ott_A 246 LAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLG-TDYG 299 (758)
T ss_dssp EEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEE-ESSS
T ss_pred EEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEE-eCCc
Confidence 55554 468889987765543321 2345889988887775553 3445
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=0.033 Score=61.58 Aligned_cols=248 Identities=9% Similarity=0.142 Sum_probs=155.1
Q ss_pred CCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcE
Q 003279 573 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 652 (834)
Q Consensus 573 Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~l 652 (834)
+..|.|.|+.+...+.+-.- .--+...+|..+.||.-. ..++.|||+++... +..+.-. ..|..=.|-.+. .
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~k-lks~~~~-e~VvfWkWis~~--~ 118 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTMT-DDVTFWKWISLN--T 118 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEE-EEEEECS-SCCCEEEEEETT--E
T ss_pred CCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhhh-hcceecC-CCceEEEecCCC--e
Confidence 44789999987554422211 112455678777777765 77999999998553 5555533 356555665443 3
Q ss_pred EEEEeCCCcEEEEECCC-CceeeEeec-----CCCeeEEEEecCCCEEEEEEc-------CCeEEEEECCCCeEEEEEeC
Q 003279 653 LCSCDNNSEIRYWSINN-GSCAGVFKC-----QSGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQG 719 (834)
Q Consensus 653 lasgs~Dg~I~lwDl~s-~~~i~~~~~-----~~~i~~l~~sp~g~~ll~~s~-------dg~I~iwDl~t~~~~~~l~~ 719 (834)
|+..+ +..|+-|++.. ..+++.|.. ...|.....+++.++++..+- .|.+.+|..+.+. -..+++
T Consensus 119 l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieG 196 (494)
T 1bpo_A 119 VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG 196 (494)
T ss_dssp EEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECC
T ss_pred EEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchhee
Confidence 33333 67899999974 356666654 344777888899999876653 3678899988653 345667
Q ss_pred CCCCEEEEEEcCCC---CEEEEEe----CCeEEEEEcCCCC---C--ceeEEE-ee---cCCCceEEEEEeCCCCEEEEE
Q 003279 720 HKNQVHSVCWNTSG---EYLASVS----DELVRVWSIGSGS---K--GECIHE-LS---CTGNKFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 720 h~~~I~sl~~spdg---~~Lasgs----Dg~I~IwDl~s~~---~--~~~i~~-~~---~~~~~I~svafspdg~~L~sg 783 (834)
|......+.+..+. .+++.+. .++++|.++.... . .+.... +- ....-..++..++....++..
T Consensus 197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyvi 276 (494)
T 1bpo_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (494)
T ss_dssp SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEE
Confidence 76555444443221 2444444 2699999996541 0 111111 11 123456788899999999999
Q ss_pred EcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcE
Q 003279 784 GCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV 830 (834)
Q Consensus 784 s~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I 830 (834)
+..|.|++||+.++.++ .-.-....|..-+.+....=++.....|.|
T Consensus 277 TK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 277 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred ecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence 99999999999999988 333344555555544444434444455554
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.91 E-value=0.046 Score=68.89 Aligned_cols=272 Identities=9% Similarity=0.007 Sum_probs=153.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCC--CCEEEEEeCCCeEEEEecCCCC-ce
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPD-YS 629 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~s~~-~~ 629 (834)
.+|.-..|...|..-+.+..+.-..+|... ++....--.-..--....|+.. ..-++.. .++.++|..+++-. ..
T Consensus 652 ~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~ 729 (1158)
T 3ei3_A 652 QPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLH 729 (1158)
T ss_dssp SCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEE
T ss_pred CceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEEEE-cCCceEEEEecccCCee
Confidence 355544454444443334445555555433 3333221111122234445432 2334443 35568888876432 22
Q ss_pred eeeeccCCCCeEEEEEccCCCcEEEEEeC------------------------------------------------CCc
Q 003279 630 LRTFTGHSTTVMSLDFHPSKEDLLCSCDN------------------------------------------------NSE 661 (834)
Q Consensus 630 i~~~~~h~~~V~sl~fspdg~~llasgs~------------------------------------------------Dg~ 661 (834)
++.+. -...+..++++|..+.+++.++. -+.
T Consensus 730 ~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~ 808 (1158)
T 3ei3_A 730 IRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHN 808 (1158)
T ss_dssp EEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEE
T ss_pred EEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEE
Confidence 33333 34577888888876655444321 124
Q ss_pred EEEEECCCCceeeEeecC--CCeeEEEEe---c-CCCEEEEEE----------cCCeEEEEECCCCeEEEEE-eCCCCCE
Q 003279 662 IRYWSINNGSCAGVFKCQ--SGATQMRFQ---P-RLGRILAAA----------IENYISILDVETQVCRLKL-QGHKNQV 724 (834)
Q Consensus 662 I~lwDl~s~~~i~~~~~~--~~i~~l~~s---p-~g~~ll~~s----------~dg~I~iwDl~t~~~~~~l-~~h~~~I 724 (834)
|+++|..+.+.+..+... ..+.+++.. . ...++++|+ ..|.|++|++..++..... ...++.|
T Consensus 809 i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v 888 (1158)
T 3ei3_A 809 LLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAV 888 (1158)
T ss_dssp EEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCE
T ss_pred EEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcC
Confidence 777887777777666543 335555432 2 246788777 2478999998755332221 2256788
Q ss_pred EEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCeEEEe
Q 003279 725 HSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTL 802 (834)
Q Consensus 725 ~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iw--dl~~~~~~~l 802 (834)
++++-- +| +|+++-..+|++|++...+... ....... .|..+.....+.+|++|..-..|.++ +...++...+
T Consensus 889 ~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~--~~~~~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~ 963 (1158)
T 3ei3_A 889 YSMVEF-NG-KLLASINSTVRLYEWTTEKELR--TECNHYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEI 963 (1158)
T ss_dssp EEEEEE-TT-EEEEEETTEEEEEEECTTSCEE--EEEEECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEE
T ss_pred EEEeee-CC-EEEEEcCCEEEEEECCCCceEE--EEeeccc-cEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEE
Confidence 888754 34 6666778899999998653222 1111111 13333444457789999988866664 5556665543
Q ss_pred c--cCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 803 S--AHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 803 ~--~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
. .+...++++.|-.+ ..++.+..+|.|.+.
T Consensus 964 a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl 995 (1158)
T 3ei3_A 964 ARDFNPNWMSAVEILDD-DNFLGAENAFNLFVC 995 (1158)
T ss_dssp EECCSCBCEEEEEEEET-TEEEEEETTSEEEEE
T ss_pred EeecccccEEEEEEEcc-CcEEEEcCCCcEEEE
Confidence 3 45667889888755 467778899998875
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0028 Score=68.05 Aligned_cols=201 Identities=9% Similarity=0.098 Sum_probs=124.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEE-ecc----CC--CCeEEEEE---CCCCCEEEEEe-----
Q 003279 550 ASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKST-LEE----HT--QWITDVRF---SPSLSRLATSS----- 613 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs-~Dg~I~IWd~~t~~~~~~-l~~----h~--~~I~~l~f---spdg~~Latgs----- 613 (834)
...---.|+.|++....|..++ ..++|..||...+..... +.+ .. ..+..|.| .++++++++..
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 3333445789988555555555 789999999886544333 322 11 13689999 68877777543
Q ss_pred --------CCCeEEEEecC---CCCceee-eecc-----------CCCCeEEEEEccCCCcEEEEEeCC-CcEEEEECCC
Q 003279 614 --------ADRTVRVWDTE---NPDYSLR-TFTG-----------HSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINN 669 (834)
Q Consensus 614 --------~Dg~I~IWDl~---s~~~~i~-~~~~-----------h~~~V~sl~fspdg~~llasgs~D-g~I~lwDl~s 669 (834)
.+..|..||+. +++.... .+.. -......++..++|+. .++++.. +.|..++...
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gna-YVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNS-YVAFALGMPAIARVSADG 168 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCE-EEEEEESSCEEEEECTTS
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCE-EEeCCCCCCeEEEEeCCC
Confidence 26789999998 5554221 1111 1134789999999874 4467777 8888777764
Q ss_pred CceeeEeec------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE-EEEEe--CC---CCCEEEE-EEcCCCCEE
Q 003279 670 GSCAGVFKC------QSGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQ--GH---KNQVHSV-CWNTSGEYL 736 (834)
Q Consensus 670 ~~~i~~~~~------~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~-~~~l~--~h---~~~I~sl-~~spdg~~L 736 (834)
......+.. ....+.++++|++..|++....+.|..+|+.+... ..... +. -.....| ....+|+.|
T Consensus 169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEE
Confidence 422222111 12367899999999999998899999999985433 01111 21 1223443 333477775
Q ss_pred EEEe--CCeEEEEEcCC
Q 003279 737 ASVS--DELVRVWSIGS 751 (834)
Q Consensus 737 asgs--Dg~I~IwDl~s 751 (834)
+++. .+.+.+.+...
T Consensus 249 lV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 249 LVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEETTEEEEEECSST
T ss_pred EEEcCCCCEEEEECCCC
Confidence 5554 55555555444
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0039 Score=68.04 Aligned_cols=224 Identities=12% Similarity=0.073 Sum_probs=124.1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc-eeeee---ccCCCCeEEEEEccC---CCcEEEEEeCC-----CcE
Q 003279 595 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTF---TGHSTTVMSLDFHPS---KEDLLCSCDNN-----SEI 662 (834)
Q Consensus 595 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~-~i~~~---~~h~~~V~sl~fspd---g~~llasgs~D-----g~I 662 (834)
.....++|.|++++++ +..++.|++++ . +.. .+..+ .........|+|+|+ +..++++.... ..|
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR-E-GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE-C-CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 3567999999998555 45679999998 3 221 11111 122456889999998 55566555433 678
Q ss_pred EEEECCCCce-----e-eEeec----CCCeeEEEEecCCCEEEEEEc-------------CCeEEEEECCCC--------
Q 003279 663 RYWSINNGSC-----A-GVFKC----QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ-------- 711 (834)
Q Consensus 663 ~lwDl~s~~~-----i-~~~~~----~~~i~~l~~sp~g~~ll~~s~-------------dg~I~iwDl~t~-------- 711 (834)
..|+...+.. + ..+.. ......++|.|++..+++.+. .+.|..+|....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 8888875421 1 11221 123468999999865555432 156777766531
Q ss_pred ------eEEEEEeCCCCCEEEEEEcC-CCCEEEEEe-CCeE------EEEEcCCCCC---------------ceeEEEee
Q 003279 712 ------VCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELV------RVWSIGSGSK---------------GECIHELS 762 (834)
Q Consensus 712 ------~~~~~l~~h~~~I~sl~~sp-dg~~Lasgs-Dg~I------~IwDl~s~~~---------------~~~i~~~~ 762 (834)
..+.. .++ .....++|+| ++.++++-. .+.+ .|.-+..+.. ...+..+.
T Consensus 188 ~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~ 265 (352)
T 2ism_A 188 GRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP 265 (352)
T ss_dssp TCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred CCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence 11111 122 2356789999 677666544 2221 2333332220 11222221
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe-------EEEeccCCCCeEEEEEeCCCCEEEEEe
Q 003279 763 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-------TLTLSAHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 763 ~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~-------~~~l~~h~~~V~~lafspdg~~LaSgs 825 (834)
.......++| .+|..+++.-..+.|...+++... ...+......+.++++.|||.++++..
T Consensus 266 -~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 266 -QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp -TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred -CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 2234566777 355544443345578777775432 122223346789999999998777654
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0035 Score=67.94 Aligned_cols=180 Identities=10% Similarity=0.159 Sum_probs=119.2
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecC----CC---EEEEEEc---CCeEEEEEC--CCCeEEEEEe
Q 003279 651 DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR----LG---RILAAAI---ENYISILDV--ETQVCRLKLQ 718 (834)
Q Consensus 651 ~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~----g~---~ll~~s~---dg~I~iwDl--~t~~~~~~l~ 718 (834)
.+++.....+-+.+||+ +++.+..+.. ..++.+.+-|. ++ .+++... ++.|.+|++ .++. +..+.
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~ 117 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMT 117 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECS
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeecc
Confidence 35656677889999999 7888888765 66777777663 22 2334443 478999977 3443 44442
Q ss_pred C------CC-CCEEEEEE--cCC-CC-EEEEEe-CCeEEEEEcCCC----CCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003279 719 G------HK-NQVHSVCW--NTS-GE-YLASVS-DELVRVWSIGSG----SKGECIHELSCTGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 719 ~------h~-~~I~sl~~--spd-g~-~Lasgs-Dg~I~IwDl~s~----~~~~~i~~~~~~~~~I~svafspdg~~L~s 782 (834)
. .. ..+..+|+ ++. +. ++++.. ++.+..|++... -..+.++++.. ...+..|++.+....|++
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv 196 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYI 196 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEE
Confidence 1 11 55677888 774 54 455555 899999998432 12345666665 457889999999999999
Q ss_pred EEcCCeEEEEECC-----CCeEEEeccC---CCCeEEEEEe--CCCC-EEEEEe-cCCcEEEeC
Q 003279 783 IGCYETLELWNMT-----ENKTLTLSAH---DKLVSSLAAS--TVNG-MVASAS-HDKCVKIWK 834 (834)
Q Consensus 783 gs~dg~I~Iwdl~-----~~~~~~l~~h---~~~V~~lafs--pdg~-~LaSgs-~DG~I~IWd 834 (834)
+-.+..|..|+.+ +++.+...+. ...+..|++- ++++ +|++++ .+..+.|||
T Consensus 197 ~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 9999888888865 3445543322 2468888884 5555 566555 566777775
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0085 Score=65.46 Aligned_cols=226 Identities=12% Similarity=0.067 Sum_probs=129.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeee---ccCCCCeEEEEEccC---CCcEEEEEeC---C----C
Q 003279 594 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPS---KEDLLCSCDN---N----S 660 (834)
Q Consensus 594 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~---~~h~~~V~sl~fspd---g~~llasgs~---D----g 660 (834)
-.....++|.|+++ |+++..++.|+++|.. +...+..+ .........|+|+|+ +..++++... + .
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEeCC-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34578999999997 4555667999999743 32222211 122356889999997 5555555442 3 5
Q ss_pred cEEEEECCCC--c---e--e-eEeec--CCCeeEEEEecCCCEEEEEEc-------------CCeEEEEECCCC------
Q 003279 661 EIRYWSINNG--S---C--A-GVFKC--QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ------ 711 (834)
Q Consensus 661 ~I~lwDl~s~--~---~--i-~~~~~--~~~i~~l~~sp~g~~ll~~s~-------------dg~I~iwDl~t~------ 711 (834)
.|..|+.... . . + ..+.. ......+.|.|++..+++.+. .+.|..+|....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 6888887654 1 1 1 11221 123567999999876665432 246776766532
Q ss_pred ---eEEEEEeCCCCCEEEEEEcC-CCCEEEEEe--CC--eEEEEEcCCCCC---------------ceeEEEeecCCCce
Q 003279 712 ---VCRLKLQGHKNQVHSVCWNT-SGEYLASVS--DE--LVRVWSIGSGSK---------------GECIHELSCTGNKF 768 (834)
Q Consensus 712 ---~~~~~l~~h~~~I~sl~~sp-dg~~Lasgs--Dg--~I~IwDl~s~~~---------------~~~i~~~~~~~~~I 768 (834)
..+.. .++. ....++|+| ++.++++-. +. .|.+.. .+.. ...+..+.......
T Consensus 186 f~~~~i~a-~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap 261 (354)
T 3a9g_A 186 FPNSPIWS-YGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAP 261 (354)
T ss_dssp STTCCEEE-ECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCE
T ss_pred CCCCcEEE-EccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCC
Confidence 11221 2343 345899999 677666544 22 344432 2210 01222331223456
Q ss_pred EEEEEe-------CCCCEEEEEEcCCeEEEEECCCC-eEE---Eec-cCCCCeEEEEEeCCCCEEEEEe
Q 003279 769 HSCVFH-------PTFPSLLVIGCYETLELWNMTEN-KTL---TLS-AHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 769 ~svafs-------pdg~~L~sgs~dg~I~Iwdl~~~-~~~---~l~-~h~~~V~~lafspdg~~LaSgs 825 (834)
..++|. .+|.++++.-..+.|..+++... +.. .+. .....+.++++.|||.++++..
T Consensus 262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 777873 45655554445568888888753 332 222 2246799999999998777664
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.002 Score=68.12 Aligned_cols=228 Identities=9% Similarity=0.061 Sum_probs=118.3
Q ss_pred CCCEEEEEe-CC-----CcEEEEeCCCCeEEEE--eccCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEecCCCC--
Q 003279 563 DGKLLATGG-HD-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD-- 627 (834)
Q Consensus 563 dg~~Lasgs-~D-----g~I~IWd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~D-----g~I~IWDl~s~~-- 627 (834)
++.+++.|+ .+ ..+.+||..+.+-... +.........+.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE--CCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 445666666 32 4688999887654322 1111111222222 56677777754 468999998766
Q ss_pred -ceee-eeccCCCCeEEEEEccCCCcEEEEEeCC-----CcEEEEECCCCceeeEeecCCC--eeEEEEecCCCEEEEEE
Q 003279 628 -YSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAA 698 (834)
Q Consensus 628 -~~i~-~~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~lwDl~s~~~i~~~~~~~~--i~~l~~sp~g~~ll~~s 698 (834)
.... .+.........+.+ + ..+++.|+.+ ..+.+||+.+.+....-..... -.+++. .++..+++|+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 167 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL--G-DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGG 167 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECC
T ss_pred eeEECCCCCCCccceeEEEE--C-CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECC
Confidence 4222 11111112222222 3 4566676643 3688999988765443332211 122222 2556666666
Q ss_pred cC-----CeEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCC
Q 003279 699 IE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTG 765 (834)
Q Consensus 699 ~d-----g~I~iwDl~t~~~~~~--l~~h~~~I~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~ 765 (834)
.+ ..+.+||+.+.+-... +........++.+ ++++++.|+ + ..|.+||+.+..- ..+..+....
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~r 244 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSW-TTVTSMTTPR 244 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE-EEECCCSSCC
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcE-EECCCCCCcc
Confidence 54 4689999988743322 1111111122222 566666665 3 3689999987621 1221121111
Q ss_pred CceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEE
Q 003279 766 NKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLT 801 (834)
Q Consensus 766 ~~I~svafspdg~~L~sgs~d-----g~I~Iwdl~~~~~~~ 801 (834)
.....+.+ ++..++.|+.+ ..|.+||+.+.+...
T Consensus 245 ~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 283 (301)
T 2vpj_A 245 CYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWEV 283 (301)
T ss_dssp BSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEEE
T ss_pred cceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEEE
Confidence 11222222 55666666654 368899998876553
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.005 Score=67.25 Aligned_cols=233 Identities=8% Similarity=0.062 Sum_probs=127.4
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc-eee----eeccCCCCeEEEEEccC---CCcEEEEEeC-------C
Q 003279 595 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLR----TFTGHSTTVMSLDFHPS---KEDLLCSCDN-------N 659 (834)
Q Consensus 595 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~-~i~----~~~~h~~~V~sl~fspd---g~~llasgs~-------D 659 (834)
.....|+|.|+++.|+++...|.|++++...... .+. .+.........|+|+|+ +..++++-.. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 3468999999998444556789999998542110 011 11122345789999996 4555555432 2
Q ss_pred CcEEEEECCCC--c--eee-Eeec-------CCCeeEEEEecCCCEEEEEEc-------------CCeEEEEECCCC---
Q 003279 660 SEIRYWSINNG--S--CAG-VFKC-------QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ--- 711 (834)
Q Consensus 660 g~I~lwDl~s~--~--~i~-~~~~-------~~~i~~l~~sp~g~~ll~~s~-------------dg~I~iwDl~t~--- 711 (834)
..|..|++..+ . ... .+.. ......+.|.|++..+++.+. .+.|.-+|....
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 35777776543 1 111 1111 122457999999854444433 246777776532
Q ss_pred -----------eEEEEEeCCCCCEEEEEEcC-CCCEEEEEe--CCeEEEEEcCCCCC-----------------------
Q 003279 712 -----------VCRLKLQGHKNQVHSVCWNT-SGEYLASVS--DELVRVWSIGSGSK----------------------- 754 (834)
Q Consensus 712 -----------~~~~~l~~h~~~I~sl~~sp-dg~~Lasgs--Dg~I~IwDl~s~~~----------------------- 754 (834)
..+.. .++ .....++|+| +|.++++-. ++.=.|.-+..+..
T Consensus 178 ~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp TCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 11111 223 3467899999 566555433 22122222222111
Q ss_pred -----ceeEEEeecCCCceEEEEEeC-------CCCEEEEEEcCCeEEEEECCCCeEE---Eec-cCCCCeEEEEEeCCC
Q 003279 755 -----GECIHELSCTGNKFHSCVFHP-------TFPSLLVIGCYETLELWNMTENKTL---TLS-AHDKLVSSLAASTVN 818 (834)
Q Consensus 755 -----~~~i~~~~~~~~~I~svafsp-------dg~~L~sgs~dg~I~Iwdl~~~~~~---~l~-~h~~~V~~lafspdg 818 (834)
...+..+. +...+..++|.. ++.++++.-..+.|...++..++.. .+. .....+..+++.|||
T Consensus 256 ~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG 334 (353)
T 2g8s_A 256 IVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDG 334 (353)
T ss_dssp SCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTS
T ss_pred CCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCC
Confidence 01111222 123466677764 3555555445668888888776544 222 234579999999999
Q ss_pred CEEEEEe-cCCcE
Q 003279 819 GMVASAS-HDKCV 830 (834)
Q Consensus 819 ~~LaSgs-~DG~I 830 (834)
.++++.. .+|.|
T Consensus 335 ~lyv~td~~~g~I 347 (353)
T 2g8s_A 335 YLYVLTDESSGEL 347 (353)
T ss_dssp CEEEEECSTTEEE
T ss_pred cEEEEEeCCCCEE
Confidence 9766543 45654
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0031 Score=67.73 Aligned_cols=197 Identities=8% Similarity=0.041 Sum_probs=124.0
Q ss_pred ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCC---------CeeEEEE---ecCCCEEEEEEc--
Q 003279 634 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS---------GATQMRF---QPRLGRILAAAI-- 699 (834)
Q Consensus 634 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~---------~i~~l~~---sp~g~~ll~~s~-- 699 (834)
........+++|++....++++.-..+.|..||...+..... .... .+..+.| .+++..+++...
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 344455678999987676666665799999999986654433 2211 2578899 688555554432
Q ss_pred -----------CCeEEEEECC---CCeEEEEEeC-------------CCCCEEEEEEcCCCCEEEEEe-C-CeEEEEEcC
Q 003279 700 -----------ENYISILDVE---TQVCRLKLQG-------------HKNQVHSVCWNTSGEYLASVS-D-ELVRVWSIG 750 (834)
Q Consensus 700 -----------dg~I~iwDl~---t~~~~~~l~~-------------h~~~I~sl~~spdg~~Lasgs-D-g~I~IwDl~ 750 (834)
+..|..||+. +++.+....- -......++..++|+..++++ . +.|..++..
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 5789999999 7766554431 112478999999999999888 6 776666654
Q ss_pred CCCCceeEE-Ee--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeE--EEec--cC---CCCeEEE-EEeCCCC
Q 003279 751 SGSKGECIH-EL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT--LTLS--AH---DKLVSSL-AASTVNG 819 (834)
Q Consensus 751 s~~~~~~i~-~~--~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~--~~l~--~h---~~~V~~l-afspdg~ 819 (834)
... ..... .. .......+.++++|++..|++....+.|..+|+..... +... +. -.....| ..-.+|+
T Consensus 168 G~~-~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~ 246 (334)
T 2p9w_A 168 GKT-VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNE 246 (334)
T ss_dssp SCC-EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred CCE-EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCE
Confidence 331 11111 11 11123367899999999999988888999999885443 3222 21 1223443 3334677
Q ss_pred E-EEEEecCCcEEE
Q 003279 820 M-VASASHDKCVKI 832 (834)
Q Consensus 820 ~-LaSgs~DG~I~I 832 (834)
. |++.+..+.+.+
T Consensus 247 vllV~~~~~~~~~l 260 (334)
T 2p9w_A 247 SVLVGARAPYAISF 260 (334)
T ss_dssp EEEEEEETTEEEEE
T ss_pred EEEEEcCCCCEEEE
Confidence 6 455545554443
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.02 Score=62.18 Aligned_cols=233 Identities=12% Similarity=0.104 Sum_probs=132.2
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCce-eeee----ccCCCCeEEEEEccC---CCcEEEEE--eC
Q 003279 589 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTF----TGHSTTVMSLDFHPS---KEDLLCSC--DN 658 (834)
Q Consensus 589 ~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~-i~~~----~~h~~~V~sl~fspd---g~~llasg--s~ 658 (834)
.+...-...+.|+|.||+.++++--..|.|++++...+... +..+ .........|+|+|+ +..++++- ..
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 34334456789999999987777655899999987654421 1111 223456899999995 34344332 24
Q ss_pred CCcEEEEECCCCc--------eeeE---eec--CCCeeEEEEecCCCEEEEEEc-------------CCeEEEEECCCC-
Q 003279 659 NSEIRYWSINNGS--------CAGV---FKC--QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ- 711 (834)
Q Consensus 659 Dg~I~lwDl~s~~--------~i~~---~~~--~~~i~~l~~sp~g~~ll~~s~-------------dg~I~iwDl~t~- 711 (834)
++.|.-|.+..+. .... +.. ......+.|.|++..+++.+. .|.|.-++....
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 5567777765421 1111 211 223567999999877666542 356666666532
Q ss_pred --------eEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC---------------ceeEEEeecCCC
Q 003279 712 --------VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK---------------GECIHELSCTGN 766 (834)
Q Consensus 712 --------~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~---------------~~~i~~~~~~~~ 766 (834)
..+.. .+|. ....++|+|+|.++++-. |+.-.|.-+..+.. ...+..+..+..
T Consensus 186 p~~nPf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 186 APGNPFPGSPVYS-YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA 263 (347)
T ss_dssp CTTCSSTTCCEEE-BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred cCCCCCCCCeEEe-eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence 11222 2443 345899999988776654 43233333333211 112223332223
Q ss_pred ceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCeE----E-EeccCCCCeEEEEEeCCCCEEEEEe
Q 003279 767 KFHSCVFHPTFPSLLVIGC-YETLELWNMTENKT----L-TLSAHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 767 ~I~svafspdg~~L~sgs~-dg~I~Iwdl~~~~~----~-~l~~h~~~V~~lafspdg~~LaSgs 825 (834)
....++|.. +. ++.+.. .+.|..+.+..... . .+.+....+.+|+..|||.++++.+
T Consensus 264 ap~G~~~~~-g~-~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 264 SPSGIAYAE-GS-VWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CEEEEEEET-TE-EEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCcceEEEc-Cc-eeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 456667763 44 444444 44677667665432 1 2334457899999999998776654
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.052 Score=60.05 Aligned_cols=234 Identities=13% Similarity=0.177 Sum_probs=154.4
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccC
Q 003279 557 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 636 (834)
Q Consensus 557 sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h 636 (834)
+.-.+|..+.||.=. ..++.|||+++...+..+.-.+ .|..=.|-.+ +.|+.. .+..|+-|+++....+.+.+..|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lV-T~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALV-TDNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEE-CSSEEEEEESSSSCCCEEEEECC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEE-cCCeeEEecccCCCCchhheecc
Confidence 455678777777765 6799999999998888876444 5666666544 345555 35689999998766667777665
Q ss_pred C----CCeEEEEEccCCCcEEEEEe------CCCcEEEEECCCCceeeEeecCCCeeE-EEEecCC----CEEEE-EEc-
Q 003279 637 S----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRL----GRILA-AAI- 699 (834)
Q Consensus 637 ~----~~V~sl~fspdg~~llasgs------~Dg~I~lwDl~s~~~i~~~~~~~~i~~-l~~sp~g----~~ll~-~s~- 699 (834)
. ..|.....+++.+.++++|= -.|.+.+|..+.+..- .+.. ...+ ..+-.+| ..+++ +..
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ-~ieG--haa~F~~~~~~g~~~~~~lf~fa~r~ 222 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIEG--HAASFAQFKMEGNAEESTLFCFAVRG 222 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE-EECC--SEEEEEEEECTTCSSEEEEEEEEECS
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc-hhee--eeeeeEEEecCCCCCCceEEEEEEec
Confidence 3 56777788888887776663 2467888988755422 2221 1111 1111111 12222 222
Q ss_pred --CCeEEEEECCCC--------eEEEEE-eC---CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC
Q 003279 700 --ENYISILDVETQ--------VCRLKL-QG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 764 (834)
Q Consensus 700 --dg~I~iwDl~t~--------~~~~~l-~~---h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~ 764 (834)
.+.++|.++... +....+ .. ..+-..++..++.-.+++.-+ -|.|++||+.++ .++..-+..
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg---t~i~~nrIs 299 (494)
T 1bpo_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRIS 299 (494)
T ss_dssp TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECC
T ss_pred CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc---eeeeeeccc
Confidence 278999998542 111111 11 234556788888777777777 899999999999 788887777
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 765 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 765 ~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
...|...+.+....-+++....|.|.-..+++..++
T Consensus 300 ~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 300 GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp SSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred CCceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence 888877777777777888888888877777666544
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0073 Score=65.93 Aligned_cols=226 Identities=13% Similarity=0.075 Sum_probs=123.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-------ccCCCCeEEEEECCC---CCEEEEEe-C-------C
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPS---LSRLATSS-A-------D 615 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l-------~~h~~~I~~l~fspd---g~~Latgs-~-------D 615 (834)
.-..|+|.|||++|+++...|.|++++.. +.....+ .........|+|+|+ +..|+.+. . .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 36789999999834455678999999853 3322111 122345789999996 44444442 2 2
Q ss_pred CeEEEEecCCCCce---ee----eec---cCCCCeEEEEEccCCCcEEEEEeC-------------CCcEEEEECCCCc-
Q 003279 616 RTVRVWDTENPDYS---LR----TFT---GHSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNGS- 671 (834)
Q Consensus 616 g~I~IWDl~s~~~~---i~----~~~---~h~~~V~sl~fspdg~~llasgs~-------------Dg~I~lwDl~s~~- 671 (834)
..|..|++...... .. .+. ........|+|.|+|. |+++.+. .|.|..+|....-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 35767776543110 11 111 1112245799999985 4444332 2467777765320
Q ss_pred -----------eeeEee-cCCCeeEEEEecCCCEEEEEEcCC----eEEEEECC--------C-----------------
Q 003279 672 -----------CAGVFK-CQSGATQMRFQPRLGRILAAAIEN----YISILDVE--------T----------------- 710 (834)
Q Consensus 672 -----------~i~~~~-~~~~i~~l~~sp~g~~ll~~s~dg----~I~iwDl~--------t----------------- 710 (834)
....+. .......++|+|..+.|+++.... .|.+.... .
T Consensus 177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 112222 234478899999656676665532 23222110 0
Q ss_pred ----CeEEEEEeCCCCCEEEEEEcC-------CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003279 711 ----QVCRLKLQGHKNQVHSVCWNT-------SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 778 (834)
Q Consensus 711 ----~~~~~~l~~h~~~I~sl~~sp-------dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~ 778 (834)
..++..+. +...+..++|.. +|.++++.. .+.|...++..+........+......+..+++.|+|.
T Consensus 257 ~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 335 (353)
T 2g8s_A 257 VAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY 335 (353)
T ss_dssp CTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred CCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence 01122222 234567788864 466666555 77888888875421111111223345789999999998
Q ss_pred EEEE
Q 003279 779 SLLV 782 (834)
Q Consensus 779 ~L~s 782 (834)
.+++
T Consensus 336 lyv~ 339 (353)
T 2g8s_A 336 LYVL 339 (353)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00012 Score=87.81 Aligned_cols=214 Identities=8% Similarity=0.019 Sum_probs=128.4
Q ss_pred CCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC----CceeeEeec-CCCeeEEEEe
Q 003279 614 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFKC-QSGATQMRFQ 688 (834)
Q Consensus 614 ~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s----~~~i~~~~~-~~~i~~l~~s 688 (834)
....|++.++..... ..+......+..|+|++.+..|+++-...+.|+.+++.. ......+.. ......+++.
T Consensus 384 ~~~~I~~id~~~~~~--~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 461 (699)
T ss_dssp CTTC-CEECTTSCCE--ECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred CccceEEEeCCCCcc--eeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence 345788888876443 222223345778999988777776666678999999875 222222211 1235567888
Q ss_pred cCCCEEEEEE-cCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEEcCCCCCceeEEEeecC
Q 003279 689 PRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECIHELSCT 764 (834)
Q Consensus 689 p~g~~ll~~s-~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--D-g~I~IwDl~s~~~~~~i~~~~~~ 764 (834)
+.++.|+++. ..+.|.++++........+.........|+++|.+.+|+.+. . +.|.++++..... .. .+...
T Consensus 462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~--l~~~~ 538 (699)
T 1n7d_A 462 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YS--LVTEN 538 (699)
T ss_dssp CSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CE--ESCSS
T ss_pred eeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eE--EEeCC
Confidence 6666666554 467899999886654444433334567889999765555544 3 6788887764321 11 11222
Q ss_pred CCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEecc---CCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 765 GNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 765 ~~~I~svafspdg~~L~sgs~-dg~I~Iwdl~~~~~~~l~~---h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
......++|++++..|+++.. .+.|.++++.......+.. .......|++..+ .++++....+.|..+
T Consensus 539 l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~ 610 (699)
T 1n7d_A 539 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSA 610 (699)
T ss_dssp CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEE
T ss_pred CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEE
Confidence 345678999998777777665 4589999997654443322 2234456666553 344444455666654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0096 Score=62.94 Aligned_cols=226 Identities=8% Similarity=0.021 Sum_probs=117.3
Q ss_pred CEEEEEeC--CCcEEEEeCCCCeEEEE--eccCCCCeEEEEECCCCCEEEEEeCC----CeEEEEecCCCCceeee-ecc
Q 003279 565 KLLATGGH--DKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENPDYSLRT-FTG 635 (834)
Q Consensus 565 ~~Lasgs~--Dg~I~IWd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~D----g~I~IWDl~s~~~~i~~-~~~ 635 (834)
.+++.|+. ...+.+||..+.+-... +.........+.+ ++.+++.|+.+ ..+.+||+.+....... +..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 34555654 35789999887654422 1111112222333 56677777754 67889999876542221 111
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCC------CcEEEEECCCCceeeEeecCC--CeeEEEEecCCCEEEEEEc--------
Q 003279 636 HSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRILAAAI-------- 699 (834)
Q Consensus 636 h~~~V~sl~fspdg~~llasgs~D------g~I~lwDl~s~~~i~~~~~~~--~i~~l~~sp~g~~ll~~s~-------- 699 (834)
.......+.+ + ..+++.|+.+ ..+.+||+.+.+-...-.... .-.+++. .++..+++|+.
T Consensus 91 ~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 91 PRDSLAACAA--E-GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp CCBSCEEEEE--T-TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCE
T ss_pred cccceeEEEE--C-CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCccc
Confidence 1111222222 3 4566677654 468999998876544322211 1122222 35555666654
Q ss_pred -CCeEEEEECCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003279 700 -ENYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSC 771 (834)
Q Consensus 700 -dg~I~iwDl~t~~~~~~l~~h-~~~I~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 771 (834)
...+.+||+.+.+-...-... ...-.+++.. ++++++.|+ + ..+.+||+.+.. ...+..+.........+
T Consensus 167 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~ 244 (306)
T 3ii7_A 167 VLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNE-WKMVSPMPWKGVTVKCA 244 (306)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTE-EEECCCCSCCBSCCEEE
T ss_pred ccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCc-EEECCCCCCCccceeEE
Confidence 345899999887433221111 1111122222 566666655 2 368999998752 11221122111222233
Q ss_pred EEeCCCCEEEEEEcC-----CeEEEEECCCCeEE
Q 003279 772 VFHPTFPSLLVIGCY-----ETLELWNMTENKTL 800 (834)
Q Consensus 772 afspdg~~L~sgs~d-----g~I~Iwdl~~~~~~ 800 (834)
.+ ++..+++|+.+ ..|.+||+.+.+..
T Consensus 245 ~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 245 AV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp EE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred EE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 33 56666667644 47899999887755
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0082 Score=63.35 Aligned_cols=228 Identities=11% Similarity=0.052 Sum_probs=115.7
Q ss_pred CCEEEEEeCC----CcEEEEeCCCCeEEEE--eccCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEecCCCCceeee
Q 003279 564 GKLLATGGHD----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSLRT 632 (834)
Q Consensus 564 g~~Lasgs~D----g~I~IWd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~D-----g~I~IWDl~s~~~~i~~ 632 (834)
+.+++.|+.+ ..+.+||+.+.+-... +......-..+.+ ++.+++.|+.+ ..+.+||..+.......
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 3455556543 4688899887654332 1111111122222 56677777754 35889998876542211
Q ss_pred -eccCCCCeEEEEEccCCCcEEEEEeCCC-----cEEEEECCCCceeeEeecCCC--eeEEEEecCCCEEEEEEc-----
Q 003279 633 -FTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI----- 699 (834)
Q Consensus 633 -~~~h~~~V~sl~fspdg~~llasgs~Dg-----~I~lwDl~s~~~i~~~~~~~~--i~~l~~sp~g~~ll~~s~----- 699 (834)
..........+.+ + +.+++.|+.++ .+.+||+.+.+....-..... ..+++. .++..+++|+.
T Consensus 94 ~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 169 (302)
T 2xn4_A 94 NMRDRRSTLGAAVL--N-GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASR 169 (302)
T ss_dssp CCSSCCBSCEEEEE--T-TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTT
T ss_pred CCCccccceEEEEE--C-CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCC
Confidence 1111111222222 3 45666666543 578899887765443222111 122222 24555666654
Q ss_pred --CCeEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCCCceE
Q 003279 700 --ENYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFH 769 (834)
Q Consensus 700 --dg~I~iwDl~t~~~~~~--l~~h~~~I~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~ 769 (834)
...+.+||+.+.+-... +....... +++.. ++++++.|+ + ..+.+||+.+..- ..+...........
T Consensus 170 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~r~~~~ 246 (302)
T 2xn4_A 170 QCLSTVECYNATTNEWTYIAEMSTRRSGA-GVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAW-RQVADMNMCRRNAG 246 (302)
T ss_dssp EECCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEE-EEECCCSSCCBSCE
T ss_pred ccccEEEEEeCCCCcEEECCCCccccccc-cEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCE-eeCCCCCCccccCe
Confidence 24589999988743322 11111111 22222 566666665 3 3689999987521 12211111111112
Q ss_pred EEEEeCCCCEEEEEEcCC-----eEEEEECCCCeEEEe
Q 003279 770 SCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTL 802 (834)
Q Consensus 770 svafspdg~~L~sgs~dg-----~I~Iwdl~~~~~~~l 802 (834)
++. -++..++.|+.++ .|.+||+.+.+...+
T Consensus 247 -~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 282 (302)
T 2xn4_A 247 -VCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV 282 (302)
T ss_dssp -EEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred -EEE-ECCEEEEECCcCCCcccccEEEEcCCCCeEEEC
Confidence 222 2566666666543 589999998876654
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.074 Score=57.73 Aligned_cols=232 Identities=9% Similarity=0.056 Sum_probs=124.7
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE--EEe----ccCCCCeEEEEECCC---CCEEEEE-e--CC
Q 003279 548 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STL----EEHTQWITDVRFSPS---LSRLATS-S--AD 615 (834)
Q Consensus 548 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~--~~l----~~h~~~I~~l~fspd---g~~Latg-s--~D 615 (834)
+...-..-+.|+|.|||+++++--..|.|++++..+++.. ..+ .........|+|+|+ +.+|+.. + .+
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 3333445789999999987776655899999987655542 222 123556889999995 3444433 2 45
Q ss_pred CeEEEEecCCCC---------c-eeeeec-cCCCCeEEEEEccCCCcEEEEEe------------CCCcEEEEECCCCc-
Q 003279 616 RTVRVWDTENPD---------Y-SLRTFT-GHSTTVMSLDFHPSKEDLLCSCD------------NNSEIRYWSINNGS- 671 (834)
Q Consensus 616 g~I~IWDl~s~~---------~-~i~~~~-~h~~~V~sl~fspdg~~llasgs------------~Dg~I~lwDl~s~~- 671 (834)
..|.-|.+.... . .+..+. ........|.|.|+|..++.+|+ ..|.|.-++....-
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 567767665411 1 111121 11123467999999864443332 13556656654220
Q ss_pred ------eeeEee-cCCCeeEEEEecCCCEEEEEEc--CC--eEEEEECCCC------------------eEEEEEeCCCC
Q 003279 672 ------CAGVFK-CQSGATQMRFQPRLGRILAAAI--EN--YISILDVETQ------------------VCRLKLQGHKN 722 (834)
Q Consensus 672 ------~i~~~~-~~~~i~~l~~sp~g~~ll~~s~--dg--~I~iwDl~t~------------------~~~~~l~~h~~ 722 (834)
....+. .......++|+|++. |+++.. ++ .|.+. ..+ .++..+..+..
T Consensus 187 ~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~~~~deln~i--~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 187 PGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQDTWDELNAI--KPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA 263 (347)
T ss_dssp TTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCSSSCEEEEEE--CTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred CCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCCCCCceeeEE--cCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence 011222 234467899999755 444443 22 23332 211 11222322223
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003279 723 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 723 ~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~svafspdg~~L~sg 783 (834)
....++|. +|.+++..- .+.|....+..... .+....+......+..++..|||..+++.
T Consensus 264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 264 SPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp CEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred CCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence 55677776 355555444 55676667654421 11122233344678889999998654443
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.14 Score=55.63 Aligned_cols=201 Identities=14% Similarity=0.136 Sum_probs=120.3
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEe------------CCCcEEEEeCCC--CeEE-EEecc-----CCCCeEEEEECC-
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGG------------HDKKAVLWCTES--FTVK-STLEE-----HTQWITDVRFSP- 604 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs------------~Dg~I~IWd~~t--~~~~-~~l~~-----h~~~I~~l~fsp- 604 (834)
..+++-......+.+.++|..+++++ .+|.|.++|.++ .+.. ..+.+ ..-....|.+.+
T Consensus 43 ~~i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d 122 (355)
T 3sre_A 43 NLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID 122 (355)
T ss_dssp EECTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEEC
T ss_pred EEeCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEEC
Confidence 33444333456677888875544441 689999999873 2321 12222 123566777755
Q ss_pred -CCC-EEEEEe-C--CCeEEEEecCCCCcee---eeeccC-CCCeEEEEEccCCCcEEEEEe-----------------C
Q 003279 605 -SLS-RLATSS-A--DRTVRVWDTENPDYSL---RTFTGH-STTVMSLDFHPSKEDLLCSCD-----------------N 658 (834)
Q Consensus 605 -dg~-~Latgs-~--Dg~I~IWDl~s~~~~i---~~~~~h-~~~V~sl~fspdg~~llasgs-----------------~ 658 (834)
++. +|+++. . +.+|.+|+++...... ..+.+. -...+++.+.++|. ++++.. .
T Consensus 123 ~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~ 201 (355)
T 3sre_A 123 DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLA 201 (355)
T ss_dssp TTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCC
T ss_pred CCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCC
Confidence 444 454443 2 5688888887543322 233322 24678999999876 444433 1
Q ss_pred CCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCC-Ce--EEEEEeCCCCCEEEEEEcC-CC
Q 003279 659 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET-QV--CRLKLQGHKNQVHSVCWNT-SG 733 (834)
Q Consensus 659 Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t-~~--~~~~l~~h~~~I~sl~~sp-dg 733 (834)
.|.|+.+|. +++......-...+.++|+|+++.++++.. .+.|..||+.. +. ....+ ........+++++ +|
T Consensus 202 ~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G 278 (355)
T 3sre_A 202 WSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTG 278 (355)
T ss_dssp CEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTC
T ss_pred ccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCC
Confidence 245655655 343333333456789999999999888876 58999999863 32 22233 2345678899999 59
Q ss_pred CEEEEEe-CC-eEEEEEcC
Q 003279 734 EYLASVS-DE-LVRVWSIG 750 (834)
Q Consensus 734 ~~Lasgs-Dg-~I~IwDl~ 750 (834)
.+.+++. ++ .|..|+-.
T Consensus 279 ~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 279 DLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp CEEEEEESCHHHHHSCCTT
T ss_pred cEEEEecCCceEEEEECCC
Confidence 9888775 43 55555443
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0076 Score=63.99 Aligned_cols=230 Identities=7% Similarity=0.020 Sum_probs=117.0
Q ss_pred CCCCEEEEEeCC----CcEEEEeCCCCeEEEE--eccCCCCeEEEEECCCCCEEEEEeC----C-----CeEEEEecCCC
Q 003279 562 PDGKLLATGGHD----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSA----D-----RTVRVWDTENP 626 (834)
Q Consensus 562 pdg~~Lasgs~D----g~I~IWd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~----D-----g~I~IWDl~s~ 626 (834)
-++.+++.|+.+ ..+.+||..+.+-... +.........+.+ ++.+++.|+. + ..+.+||+.+.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 356677777642 4688999887654422 1111111122222 5667777765 2 46888998876
Q ss_pred Cceeee-eccCCCCeEEEEEccCCCcEEEEEeCC-----CcEEEEECCCCceeeEeecCCC--eeEEEEecCCCEEEEEE
Q 003279 627 DYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAA 698 (834)
Q Consensus 627 ~~~i~~-~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~lwDl~s~~~i~~~~~~~~--i~~l~~sp~g~~ll~~s 698 (834)
...... ..........+.+ + ..+++.|+.+ ..+.+||+.+.+-...-..... -.+++.. ++..+++|+
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 176 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVI--D-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGG 176 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEE--T-TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred eEeECCCCCcCccccEEEEE--C-CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeC
Confidence 532211 1111112222222 3 4466666533 4688999987764433222111 1222222 556666666
Q ss_pred cC-----CeEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCC
Q 003279 699 IE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTG 765 (834)
Q Consensus 699 ~d-----g~I~iwDl~t~~~~~~--l~~h~~~I~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~ 765 (834)
.+ ..+.+||+.+.+-... +........++.+ ++++++.|+ + ..+.+||+.+..- ..+..+....
T Consensus 177 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~r 253 (308)
T 1zgk_A 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW-TFVAPMKHRR 253 (308)
T ss_dssp BCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE-EECCCCSSCC
T ss_pred CCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE-EECCCCCCCc
Confidence 54 4689999987643321 1111111222222 566666665 3 4699999987521 1111111111
Q ss_pred CceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEe
Q 003279 766 NKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTL 802 (834)
Q Consensus 766 ~~I~svafspdg~~L~sgs~d-----g~I~Iwdl~~~~~~~l 802 (834)
... +++.. ++..++.|+.+ ..|.+||+.+.+...+
T Consensus 254 ~~~-~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 293 (308)
T 1zgk_A 254 SAL-GITVH-QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV 293 (308)
T ss_dssp BSC-EEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred cce-EEEEE-CCEEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence 112 22222 55666666643 3688999988776543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.025 Score=59.99 Aligned_cols=225 Identities=8% Similarity=0.007 Sum_probs=115.3
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEeC-----C------CeEEEEecCCCCceeeee
Q 003279 566 LLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA-----D------RTVRVWDTENPDYSLRTF 633 (834)
Q Consensus 566 ~Lasgs~Dg~I~IWd~~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~-----D------g~I~IWDl~s~~~~i~~~ 633 (834)
+++.|+ ..+.+||..+.+-.. .+..........+...++.+++.|+. . ..+.+||..+.... .+
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~--~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL--GM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE--EC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE--EC
Confidence 344555 579999998876543 22222223333344457788888873 1 13778888875532 22
Q ss_pred ccCCCC--eEEEEEccCCCcEEEEEeCC--------CcEEEEECCCCceeeEeecCCC--eeEEEEecCCCEEEEEEc-C
Q 003279 634 TGHSTT--VMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI-E 700 (834)
Q Consensus 634 ~~h~~~--V~sl~fspdg~~llasgs~D--------g~I~lwDl~s~~~i~~~~~~~~--i~~l~~sp~g~~ll~~s~-d 700 (834)
.....+ -.+++.. ++.+++.|+.+ ..+.+||+.+.+-...-..... -.+++. .++..++.|+. +
T Consensus 83 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~ 159 (315)
T 4asc_A 83 PPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGS 159 (315)
T ss_dssp CCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCT
T ss_pred CCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCC
Confidence 111111 1122222 34566666632 4689999988754433222111 122222 45566667765 2
Q ss_pred -----CeEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-CC-----eEEEEEcCCCCCceeEEEeecCCCc
Q 003279 701 -----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGNK 767 (834)
Q Consensus 701 -----g~I~iwDl~t~~~~~~--l~~h~~~I~sl~~spdg~~Lasgs-Dg-----~I~IwDl~s~~~~~~i~~~~~~~~~ 767 (834)
..+.+||..+.+-... +........++.+ ++++++.|+ ++ .+.+||+.+.. ...+.........
T Consensus 160 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~ 236 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK-WAPFEAFPQERSS 236 (315)
T ss_dssp TSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE-EEEECCCSSCCBS
T ss_pred CCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe-EEECCCCCCcccc
Confidence 4699999987643221 1111111122222 566666665 43 58899988752 1122111111111
Q ss_pred eEEEEEeCCCCEEEEEEcC--------------CeEEEEECCCCeEEEe
Q 003279 768 FHSCVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTL 802 (834)
Q Consensus 768 I~svafspdg~~L~sgs~d--------------g~I~Iwdl~~~~~~~l 802 (834)
. +++. -++..+++|+.+ ..|.+||+.+.+...+
T Consensus 237 ~-~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 237 L-SLVS-LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp C-EEEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred e-eEEE-ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 2 2222 255666666653 2578899988876544
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.022 Score=64.66 Aligned_cols=257 Identities=12% Similarity=0.092 Sum_probs=149.3
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEeccCC-------------------------CCeE--EEEECC---CCCEEEEEeC-C
Q 003279 567 LATGGHDKKAVLWCTESFTVKSTLEEHT-------------------------QWIT--DVRFSP---SLSRLATSSA-D 615 (834)
Q Consensus 567 Lasgs~Dg~I~IWd~~t~~~~~~l~~h~-------------------------~~I~--~l~fsp---dg~~Latgs~-D 615 (834)
+.+|+..|.|+|+-+.+++.+..+...+ +... .+.+.. ||++|+.-.. .
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 6788899999999999999988874211 1111 222321 5777877764 5
Q ss_pred CeEEEEecCCCCceeeeeccCCCCeEEEEEc--cCCCcEEEEEe------CCCcE------------EEEECCCCceeeE
Q 003279 616 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFH--PSKEDLLCSCD------NNSEI------------RYWSINNGSCAGV 675 (834)
Q Consensus 616 g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fs--pdg~~llasgs------~Dg~I------------~lwDl~s~~~i~~ 675 (834)
..|-..+++.-+............+.+++|- |+-.++++.+- .||.. ...|..+.+....
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q 232 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ 232 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence 6777778876543222223345677888876 56555554331 23221 1123334444333
Q ss_pred eecCCCeeEEEEecCCCEEEEEEcCC---------------eEEEEECCC-------C--e-----EEEEEeC-------
Q 003279 676 FKCQSGATQMRFQPRLGRILAAAIEN---------------YISILDVET-------Q--V-----CRLKLQG------- 719 (834)
Q Consensus 676 ~~~~~~i~~l~~sp~g~~ll~~s~dg---------------~I~iwDl~t-------~--~-----~~~~l~~------- 719 (834)
+........+...+++++.++.+.+. .+.++++.. + + -+..+.+
T Consensus 233 v~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~~ 312 (638)
T 3sbq_A 233 VIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGKD 312 (638)
T ss_dssp EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTBC
T ss_pred EEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccccC
Confidence 33344555566677778777776522 355555421 0 0 0111211
Q ss_pred --------CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC---------CCceeEEEeecCCCceEEEEEeCCCCEE
Q 003279 720 --------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG---------SKGECIHELSCTGNKFHSCVFHPTFPSL 780 (834)
Q Consensus 720 --------h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~---------~~~~~i~~~~~~~~~I~svafspdg~~L 780 (834)
-......+.++|||+++++++ +.++.|+|++.. ....++..-....-.....+|.++|. .
T Consensus 313 ~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~-a 391 (638)
T 3sbq_A 313 SKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGN-A 391 (638)
T ss_dssp CSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSE-E
T ss_pred CceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCc-e
Confidence 123345788999999999988 889999999842 11122222222355667889999994 4
Q ss_pred EEE-EcCCeEEEEECCCC----------eEE-EeccCCCCeEEEEE------eCCCCEEEEEe
Q 003279 781 LVI-GCYETLELWNMTEN----------KTL-TLSAHDKLVSSLAA------STVNGMVASAS 825 (834)
Q Consensus 781 ~sg-s~dg~I~Iwdl~~~----------~~~-~l~~h~~~V~~laf------spdg~~LaSgs 825 (834)
++. --|..|..|++... .++ ++.-|-. +-.+.- .+||++|++.+
T Consensus 392 YTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 392 YTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEE
T ss_pred EeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEec
Confidence 444 46889999998653 233 3444433 333332 57888888875
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.01 Score=62.51 Aligned_cols=213 Identities=12% Similarity=0.108 Sum_probs=106.8
Q ss_pred CCCEEEEEe-CC-----CeEEEEecCCCCceeee-eccCCCCeEEEEEccCCCcEEEEEeCC-----CcEEEEECCCCc-
Q 003279 605 SLSRLATSS-AD-----RTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGS- 671 (834)
Q Consensus 605 dg~~Latgs-~D-----g~I~IWDl~s~~~~i~~-~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~lwDl~s~~- 671 (834)
++.+++.|+ .+ ..+.+||+.+....... +.........+.+ + +.+++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~-~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL--H-DRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE--C-CEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 344555555 22 36888898875532211 1111111222222 2 4567677654 468999998876
Q ss_pred --eeeEeecC--CCeeEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEe
Q 003279 672 --CAGVFKCQ--SGATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 672 --~i~~~~~~--~~i~~l~~sp~g~~ll~~s~d-----g~I~iwDl~t~~~~~--~l~~h~~~I~sl~~spdg~~Lasgs 740 (834)
....-... ..-.+++. .++..+++|+.+ ..+.+||+.+.+-.. .+........++.+ ++++++.|+
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 167 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGG 167 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECC
T ss_pred CeeEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECC
Confidence 33332211 11122222 255666666643 468999998764332 22211111122222 566666665
Q ss_pred -C-----CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEeccCCC--
Q 003279 741 -D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDK-- 807 (834)
Q Consensus 741 -D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d-----g~I~Iwdl~~~~~~~l~~h~~-- 807 (834)
+ ..+.+||+.+..- ..+..+.........+.+ ++..+++|+.+ ..|.+||+.+.+...+.....
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 244 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHW-TNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPR 244 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred CCCCcccceEEEEeCCCCcE-EeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcc
Confidence 3 3689999887621 112111111111122222 45556666653 479999999887664432111
Q ss_pred CeEEEEEeCCCCEEEEEecC
Q 003279 808 LVSSLAASTVNGMVASASHD 827 (834)
Q Consensus 808 ~V~~lafspdg~~LaSgs~D 827 (834)
.-.+++ .-++++++.|+.+
T Consensus 245 ~~~~~~-~~~~~i~v~GG~~ 263 (301)
T 2vpj_A 245 CYVGAT-VLRGRLYAIAGYD 263 (301)
T ss_dssp BSCEEE-EETTEEEEECCBC
T ss_pred cceeEE-EECCEEEEEcCcC
Confidence 111222 2367777787765
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=97.31 E-value=7.2e-05 Score=90.13 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=2.4
Q ss_pred ccCCCCeEEEEEeC
Q 003279 803 SAHDKLVSSLAAST 816 (834)
Q Consensus 803 ~~h~~~V~~lafsp 816 (834)
..|-.-+..+.|.+
T Consensus 706 SDH~pV~a~f~l~~ 719 (727)
T 4b8c_D 706 SDHIPLLARFEFMK 719 (727)
T ss_dssp SSBCC---------
T ss_pred CCceeEEEEEEEec
Confidence 34555555555544
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.019 Score=60.61 Aligned_cols=211 Identities=10% Similarity=0.042 Sum_probs=107.4
Q ss_pred CEEEEEeC--CCeEEEEecCCCCceeee-eccCCCCeEEEEEccCCCcEEEEEeCC----CcEEEEECCCCceeeEeecC
Q 003279 607 SRLATSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFKCQ 679 (834)
Q Consensus 607 ~~Latgs~--Dg~I~IWDl~s~~~~i~~-~~~h~~~V~sl~fspdg~~llasgs~D----g~I~lwDl~s~~~i~~~~~~ 679 (834)
.+++.|+. ...+.+||..+....... ..........+.+ ++.+++.|+.+ ..+.+||+.+.+....-...
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 35555654 357889998876542211 1111112222222 24577777654 57889999887654433222
Q ss_pred CC--eeEEEEecCCCEEEEEEcC------CeEEEEECCCCeEEEEEeCCCC-CEEEEEEcCCCCEEEEEe-C--------
Q 003279 680 SG--ATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS-D-------- 741 (834)
Q Consensus 680 ~~--i~~l~~sp~g~~ll~~s~d------g~I~iwDl~t~~~~~~l~~h~~-~I~sl~~spdg~~Lasgs-D-------- 741 (834)
.. -.+++ .-++..+++|+.+ ..+.+||..+.+-...-..... .-.+++. -++++++.|+ +
T Consensus 90 ~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 167 (306)
T 3ii7_A 90 TPRDSLAAC-AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRV 167 (306)
T ss_dssp SCCBSCEEE-EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEE
T ss_pred ccccceeEE-EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccc
Confidence 11 12222 2255666677654 4699999988753322111111 1112222 2566666654 2
Q ss_pred -CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEeccCC---CCeEEE
Q 003279 742 -ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHD---KLVSSL 812 (834)
Q Consensus 742 -g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d-----g~I~Iwdl~~~~~~~l~~h~---~~V~~l 812 (834)
..+.+||+.+..- ..+..+...... .+++.. ++..++.|+.+ ..+.+||+.+.+...+.... ....++
T Consensus 168 ~~~~~~yd~~~~~W-~~~~~~p~~r~~-~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 244 (306)
T 3ii7_A 168 LNSCEVYDPATETW-TELCPMIEARKN-HGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCA 244 (306)
T ss_dssp CCCEEEEETTTTEE-EEECCCSSCCBS-CEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEE
T ss_pred cceEEEeCCCCCeE-EECCCccchhhc-ceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEE
Confidence 3488999887621 112111111111 222222 55556665543 36899999988766443211 122222
Q ss_pred EEeCCCCEEEEEecC
Q 003279 813 AASTVNGMVASASHD 827 (834)
Q Consensus 813 afspdg~~LaSgs~D 827 (834)
.+ ++++++.|+.+
T Consensus 245 ~~--~~~i~v~GG~~ 257 (306)
T 3ii7_A 245 AV--GSIVYVLAGFQ 257 (306)
T ss_dssp EE--TTEEEEEECBC
T ss_pred EE--CCEEEEEeCcC
Confidence 22 67788888755
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.059 Score=57.39 Aligned_cols=234 Identities=4% Similarity=-0.080 Sum_probs=135.3
Q ss_pred cCCCCEEEEEe--CCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC--------------CeEEEEecC
Q 003279 561 SPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--------------RTVRVWDTE 624 (834)
Q Consensus 561 Spdg~~Lasgs--~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D--------------g~I~IWDl~ 624 (834)
+.+|.+|+... .++.|+..+.+... ...+... . +--+++++.+|+.+... ..|+..+++
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 35677777764 25666666655433 3333221 1 33456788888777543 467777777
Q ss_pred CCCceeeeeccCCCCeEEEEEccCCCcEEEEE---eCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc-C
Q 003279 625 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC---DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-E 700 (834)
Q Consensus 625 s~~~~i~~~~~h~~~V~sl~fspdg~~llasg---s~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-d 700 (834)
.... ..+... . +..|+++++.++++- ..+..|+..++........... .+ ..++++++.|+..+. .
T Consensus 97 g~~~--~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~--~~--~~~~~~g~~iy~t~~g~ 166 (302)
T 3s25_A 97 GHGS--TVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH--YL--FTCNTSDRYFYYNNPKN 166 (302)
T ss_dssp SCCC--EEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS--CC--CCSEEETTEEEEECTTT
T ss_pred CCcc--eEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC--Cc--eEeeEECCEEEEEeCCC
Confidence 6542 223221 1 236677888777665 3455777778775443333332 22 456788888887776 5
Q ss_pred CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C--CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003279 701 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D--ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 777 (834)
Q Consensus 701 g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-D--g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg 777 (834)
..|++.++..+.....+.+ ... ..++|++.+|+-.. + ..|..-++..... ..+. ...+ ..|+|++
T Consensus 167 ~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~----~~Lt--~~~~--~~~~~~g 234 (302)
T 3s25_A 167 GQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP----VVLT--EANI--EHYNVYG 234 (302)
T ss_dssp CCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC----EECS--CSCE--EEEEEET
T ss_pred ceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe----EEEe--CCCc--ceEEECC
Confidence 7899999987765444432 222 34669999888776 3 3677777765532 1121 1223 3488889
Q ss_pred CEEEEEEc--CCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEe
Q 003279 778 PSLLVIGC--YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 778 ~~L~sgs~--dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs 825 (834)
..|+.+.. .+.|...+++......+... .+..+ ++.+.+|+-..
T Consensus 235 ~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~--~~~~i--~i~~d~Iy~td 280 (302)
T 3s25_A 235 SLIFYQRGGDNPALCVVKNDGTGFKELAKG--EFCNI--NVTSQYVYFTD 280 (302)
T ss_dssp TEEEEEECSSSCEEEEEETTSCCCEEEEES--CEEEE--EECSSEEEEEE
T ss_pred CEEEEEECCCCcEEEEEECCCCccEEeeCC--ccceE--EEeCCEEEEEE
Confidence 88887643 35788888877554433322 23333 34455554443
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=97.22 E-value=8.6e-05 Score=89.48 Aligned_cols=9 Identities=11% Similarity=0.261 Sum_probs=3.4
Q ss_pred CCcEEEEeC
Q 003279 573 DKKAVLWCT 581 (834)
Q Consensus 573 Dg~I~IWd~ 581 (834)
+|...+|..
T Consensus 487 ~G~AI~y~~ 495 (727)
T 4b8c_D 487 DGCCIFFKR 495 (727)
T ss_dssp CCCEEEC--
T ss_pred ccEEEEEEc
Confidence 444555443
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.018 Score=60.58 Aligned_cols=212 Identities=9% Similarity=0.063 Sum_probs=105.4
Q ss_pred CEEEEEeCC----CeEEEEecCCCCceeee-eccCCCCeEEEEEccCCCcEEEEEeCC-----CcEEEEECCCCceeeEe
Q 003279 607 SRLATSSAD----RTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVF 676 (834)
Q Consensus 607 ~~Latgs~D----g~I~IWDl~s~~~~i~~-~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~lwDl~s~~~i~~~ 676 (834)
.+++.|+.+ ..+.+||+.+....... +......- +++.. ++.+++.|+.+ ..+.+||..+.+....-
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 344555432 35788888765432211 11111111 22222 34577677654 36889999887644433
Q ss_pred ecCCC--eeEEEEecCCCEEEEEEcCC-----eEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-C-----
Q 003279 677 KCQSG--ATQMRFQPRLGRILAAAIEN-----YISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D----- 741 (834)
Q Consensus 677 ~~~~~--i~~l~~sp~g~~ll~~s~dg-----~I~iwDl~t~~~~~~--l~~h~~~I~sl~~spdg~~Lasgs-D----- 741 (834)
..... -.+++. .++..+++|+.++ .+.+||+.+.+-... +...... .+++. -++++++.|+ +
T Consensus 94 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 94 NMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS-VGVGV-VGGLLYAVGGYDVASRQ 170 (302)
T ss_dssp CCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEECCEETTTTE
T ss_pred CCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC-ceEEE-ECCEEEEEeCCCCCCCc
Confidence 22111 122222 2556677777653 588999987753322 1111111 12222 2566666654 2
Q ss_pred --CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEeccCCCC--eEEE
Q 003279 742 --ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDKL--VSSL 812 (834)
Q Consensus 742 --g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d-----g~I~Iwdl~~~~~~~l~~h~~~--V~~l 812 (834)
..+.+||+.+..- ..+..+....... +++. -++..+++|+.+ ..+.+||+.+++...+...... -.++
T Consensus 171 ~~~~~~~yd~~~~~W-~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~ 247 (302)
T 2xn4_A 171 CLSTVECYNATTNEW-TYIAEMSTRRSGA-GVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGV 247 (302)
T ss_dssp ECCCEEEEETTTTEE-EEECCCSSCCBSC-EEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred cccEEEEEeCCCCcE-EECCCCccccccc-cEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeE
Confidence 2588999887521 1121121111112 2222 255666666654 3799999998876644322111 1122
Q ss_pred EEeCCCCEEEEEecCC
Q 003279 813 AASTVNGMVASASHDK 828 (834)
Q Consensus 813 afspdg~~LaSgs~DG 828 (834)
+ .-++++++.|+.++
T Consensus 248 ~-~~~~~i~v~GG~~~ 262 (302)
T 2xn4_A 248 C-AVNGLLYVVGGDDG 262 (302)
T ss_dssp E-EETTEEEEECCBCS
T ss_pred E-EECCEEEEECCcCC
Confidence 2 23677778887654
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.16 E-value=0.53 Score=59.25 Aligned_cols=242 Identities=13% Similarity=0.053 Sum_probs=139.8
Q ss_pred CcEEEEeCCCCeEEEEeccC-CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCC---
Q 003279 574 KKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK--- 649 (834)
Q Consensus 574 g~I~IWd~~t~~~~~~l~~h-~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg--- 649 (834)
..|++.+.+....+..+... ...|...+.+. ..++.++ ++.|.+++++.+.........-...|.|+++.+..
T Consensus 492 ~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~ 568 (1158)
T 3ei3_A 492 ASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSN 568 (1158)
T ss_dssp SCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSST
T ss_pred CEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCc
Confidence 45777777665566666533 34577777653 4666665 67888888875432222222345689999998643
Q ss_pred --CcEEEEEeC-CCcEEEEECCCCceeeEeecCC--CeeEEEEec--CCCEEEEEEcCCeEEEEEC--CCCeEEE---EE
Q 003279 650 --EDLLCSCDN-NSEIRYWSINNGSCAGVFKCQS--GATQMRFQP--RLGRILAAAIENYISILDV--ETQVCRL---KL 717 (834)
Q Consensus 650 --~~llasgs~-Dg~I~lwDl~s~~~i~~~~~~~--~i~~l~~sp--~g~~ll~~s~dg~I~iwDl--~t~~~~~---~l 717 (834)
..+++.|.. |++|+|+++.+.+.+....... ...++.+.. ...+++++-.||.+..+.+ .++.... .+
T Consensus 569 ~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~ 648 (1158)
T 3ei3_A 569 GLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVT 648 (1158)
T ss_dssp TCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEE
T ss_pred ccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEE
Confidence 246777775 9999999999877665554422 444554432 3357888888998765554 4443322 22
Q ss_pred eCCCCCEEEEEEcCCC-CEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCce-EEEEEeCCC--CEEEEEEcCCeEEEEE
Q 003279 718 QGHKNQVHSVCWNTSG-EYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF-HSCVFHPTF--PSLLVIGCYETLELWN 793 (834)
Q Consensus 718 ~~h~~~I~sl~~spdg-~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I-~svafspdg--~~L~sgs~dg~I~Iwd 793 (834)
-+ ..++.-..+...+ ..++++++.-..+|.-... -.+..+. ...+ ..+.|+... .-++.+ .++.++|..
T Consensus 649 LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~---l~~s~l~--~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~ 721 (1158)
T 3ei3_A 649 LG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHK---LVFSNVN--LKEVNYMCPLNSDGYPDSLALA-NNSTLTIGT 721 (1158)
T ss_dssp CC-SSCCEEEEEESSSCEEEEEESSSCEEEEESSSS---EEEEEBS--SSCCCEEEEECCSSSTTEEEEE-CSSCEEEEE
T ss_pred cC-CCceEEEEEeeCCceeEEEECCCCEEEEEcCCc---eEEeccC--hHHhceEeccCcccCCCcEEEE-cCCceEEEE
Confidence 23 3344444443333 3455555665555554321 1222222 2223 344565432 334443 445688887
Q ss_pred CCCCeEE--EeccCCCCeEEEEEeCCCCEEEEEe
Q 003279 794 MTENKTL--TLSAHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 794 l~~~~~~--~l~~h~~~V~~lafspdg~~LaSgs 825 (834)
+.+.... ....-...+..++++|+.+.++.+.
T Consensus 722 i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~ 755 (1158)
T 3ei3_A 722 IDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLS 755 (1158)
T ss_dssp ECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEE
T ss_pred ecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEE
Confidence 7543322 3334557899999999988766554
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.16 Score=57.28 Aligned_cols=156 Identities=12% Similarity=0.159 Sum_probs=89.2
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCce-eeeecc------CCCCeEEEEEccC---CCcEEEEEeC-----
Q 003279 594 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTG------HSTTVMSLDFHPS---KEDLLCSCDN----- 658 (834)
Q Consensus 594 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~-i~~~~~------h~~~V~sl~fspd---g~~llasgs~----- 658 (834)
-...+.|+|.|+|+++++-...+.|++++..++... +..+.. ....+..|+|+|+ +..++++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345679999999987776544457888876544321 222211 2356779999996 5555555432
Q ss_pred -------CCcEEEEECCCC--c---eeeEe---ec--CCCeeEEEEecCCCEEEEEEcC---------------------
Q 003279 659 -------NSEIRYWSINNG--S---CAGVF---KC--QSGATQMRFQPRLGRILAAAIE--------------------- 700 (834)
Q Consensus 659 -------Dg~I~lwDl~s~--~---~i~~~---~~--~~~i~~l~~sp~g~~ll~~s~d--------------------- 700 (834)
...|..|++..+ . ....+ .. ......++|.|+|..+++.+..
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~ 185 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQ 185 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHH
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCccccccccccccccccc
Confidence 235666665432 1 11112 11 2347889999999877765532
Q ss_pred -----------CeEEEEECCCCe----------EEEEE-eCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcC
Q 003279 701 -----------NYISILDVETQV----------CRLKL-QGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIG 750 (834)
Q Consensus 701 -----------g~I~iwDl~t~~----------~~~~l-~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~ 750 (834)
|.|.-++..... ....+ .+| .....++|+++|.++++-. ++.-.|.-+.
T Consensus 186 ~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d~g~~~~dein~i~ 258 (454)
T 1cru_A 186 ELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQGPNSDDEINLIV 258 (454)
T ss_dssp HHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEECSSSCEEEEECC
T ss_pred cccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEecCCCCCeEEEEec
Confidence 345555554320 11111 233 3567899999988777654 4434444443
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.058 Score=57.22 Aligned_cols=227 Identities=7% Similarity=-0.001 Sum_probs=112.3
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEeC----CC-------eEEEEecCCCCceeee-
Q 003279 566 LLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA----DR-------TVRVWDTENPDYSLRT- 632 (834)
Q Consensus 566 ~Lasgs~Dg~I~IWd~~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~----Dg-------~I~IWDl~s~~~~i~~- 632 (834)
+++.|+. .+.+||..+.+-.. .+..........+...++.+++.|+. ++ .+.+||..+.......
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 3444443 47889988876543 22211122223334457788888873 12 2778888765542211
Q ss_pred eccCCCCeEEEEEccCCCcEEEEEeCC-------CcEEEEECCCCceeeEeecCCC--eeEEEEecCCCEEEEEEc----
Q 003279 633 FTGHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI---- 699 (834)
Q Consensus 633 ~~~h~~~V~sl~fspdg~~llasgs~D-------g~I~lwDl~s~~~i~~~~~~~~--i~~l~~sp~g~~ll~~s~---- 699 (834)
..........+.+ + +.+++.|+.+ ..+.+||+.+.+-...-..... -.+++. .++..++.|+.
T Consensus 96 ~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~ 171 (318)
T 2woz_A 96 LPSARCLFGLGEV--D-DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDK 171 (318)
T ss_dssp BSSCBCSCEEEEE--T-TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSS
T ss_pred CCccccccceEEE--C-CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCC
Confidence 1111111122222 3 4566666643 3588899987765443222221 112222 45566666654
Q ss_pred --CCeEEEEECCCCeEEEEEeC-CCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCCCceEE
Q 003279 700 --ENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHS 770 (834)
Q Consensus 700 --dg~I~iwDl~t~~~~~~l~~-h~~~I~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~s 770 (834)
...+.+||+.+.+-...-.. ....-.+++.. ++++++.|+ + ..+.+||+.+..- ..+..+....... +
T Consensus 172 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~-~ 248 (318)
T 2woz_A 172 KCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKW-EVMTEFPQERSSI-S 248 (318)
T ss_dssp CBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCE-EECCCCSSCCBSC-E
T ss_pred CccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeE-EECCCCCCcccce-E
Confidence 24699999988753322111 11111122222 566666665 2 2578899887521 2222222111111 2
Q ss_pred EEEeCCCCEEEEEEcC--------------CeEEEEECCCCeEEEe
Q 003279 771 CVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTL 802 (834)
Q Consensus 771 vafspdg~~L~sgs~d--------------g~I~Iwdl~~~~~~~l 802 (834)
++ .-++..++.|+.+ ..|.+||+.+.+...+
T Consensus 249 ~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 249 LV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 22 2245555665543 3688999988776544
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.075 Score=56.57 Aligned_cols=177 Identities=8% Similarity=0.024 Sum_probs=109.7
Q ss_pred EEEEcCCCCEEEEEeCC--------------CcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe--C--CCeE
Q 003279 557 SCHFSPDGKLLATGGHD--------------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS--A--DRTV 618 (834)
Q Consensus 557 sl~fSpdg~~Lasgs~D--------------g~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs--~--Dg~I 618 (834)
+--|+++|++|+.+... ..|+..+++..+... +... . +..|++++++|+-.. . ...|
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD--P--CIYASLIGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS--C--EEEEEEETTEEEEEEESSSSCEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC--C--ccEEEEeCCEEEEEeecCCCCceE
Confidence 34567889988877643 367777777665333 3221 1 235677888888776 2 3456
Q ss_pred EEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEE
Q 003279 619 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 698 (834)
Q Consensus 619 ~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s 698 (834)
+..+++... ...+..+.. ..|+++++.++++......|.+.++..+.....+. ... ...++|++++|+...
T Consensus 132 y~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~-~~~~~P~g~~iy~t~ 202 (302)
T 3s25_A 132 YRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--CNC-YKPVVLDDTNVYYMD 202 (302)
T ss_dssp EEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--SCE-EEEEEEETTEEEEEE
T ss_pred EEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--CCc-cceeeecCCEEEEEE
Confidence 666665433 344443432 45677888888776656789999988766554433 233 234679999998887
Q ss_pred cC--CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCC
Q 003279 699 IE--NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSG 752 (834)
Q Consensus 699 ~d--g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs---Dg~I~IwDl~s~ 752 (834)
.. ..|..-++..... ..+. ...+ ..|+|++.+|+.+. .+.|...++...
T Consensus 203 ~~~~~~I~~~~ldG~~~-~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 203 VNRDNAIVHVNINNPNP-VVLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp GGGTTEEEEECSSSCCC-EECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred cCCCcEEEEEECCCCCe-EEEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 64 3677777776542 2332 2233 34778888888764 346777777654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.049 Score=60.23 Aligned_cols=141 Identities=18% Similarity=0.192 Sum_probs=93.4
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEeCC----CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCc---------e
Q 003279 690 RLGRILAAAIENYISILDVETQVCRLKLQGH----KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG---------E 756 (834)
Q Consensus 690 ~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h----~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~---------~ 756 (834)
++..++++ .++.|+.-++......+.+... -..|..+..+|+|.+||..++..|.|..+..+... .
T Consensus 31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~ 109 (452)
T 3pbp_A 31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAF 109 (452)
T ss_dssp TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccccc
Confidence 33444333 3466777776643323333322 22578899999999999999999999999843210 1
Q ss_pred eEEEeec------CCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCCe--EE---------EeccCCCCeEEEEEeC
Q 003279 757 CIHELSC------TGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENK--TL---------TLSAHDKLVSSLAAST 816 (834)
Q Consensus 757 ~i~~~~~------~~~~I~svafspdg---~~L~sgs~dg~I~Iwdl~~~~--~~---------~l~~h~~~V~~lafsp 816 (834)
....+.. ...+|..+.|||-+ ..|++-..|+.|++||+.... +. ........|.+++|..
T Consensus 110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~ 189 (452)
T 3pbp_A 110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK 189 (452)
T ss_dssp EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT
T ss_pred ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC
Confidence 1222322 24679999999964 689999999999999997622 11 1122336789999999
Q ss_pred CCCEEEEEe--cCCcEE
Q 003279 817 VNGMVASAS--HDKCVK 831 (834)
Q Consensus 817 dg~~LaSgs--~DG~I~ 831 (834)
++-.|...+ .+|.|+
T Consensus 190 ~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 190 DGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp TSSCEEEEECTTSCEEE
T ss_pred CCcEEEEEecCCCCCEE
Confidence 877666644 778775
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.018 Score=62.29 Aligned_cols=231 Identities=8% Similarity=-0.057 Sum_probs=113.7
Q ss_pred CCCEEEEEeCC-CcEEEEeCCC--Ce--EEEEec-cCCCCeEEEEECCCCCEEEEEeC-C---------CeEEEEecCCC
Q 003279 563 DGKLLATGGHD-KKAVLWCTES--FT--VKSTLE-EHTQWITDVRFSPSLSRLATSSA-D---------RTVRVWDTENP 626 (834)
Q Consensus 563 dg~~Lasgs~D-g~I~IWd~~t--~~--~~~~l~-~h~~~I~~l~fspdg~~Latgs~-D---------g~I~IWDl~s~ 626 (834)
++++++.|+.+ ..+.+||..+ .+ .+..+. .......++.+ ++++++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 56666777643 5688899863 22 222222 11111222333 5667777765 2 46889999876
Q ss_pred Cceeeeecc-CCCCeEEEEEccCCCcEEEEEeCC---------------------------------------CcEEEEE
Q 003279 627 DYSLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNN---------------------------------------SEIRYWS 666 (834)
Q Consensus 627 ~~~i~~~~~-h~~~V~sl~fspdg~~llasgs~D---------------------------------------g~I~lwD 666 (834)
......... ....-.+++. .+ ..+++.|+.+ ..+.+||
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV-HN-GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE-ET-TEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred cEEECCCCCCcccccceEEE-EC-CEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 542221111 1111112222 23 4577677654 5789999
Q ss_pred CCCCceeeEeecC--CCe-eEEEEecCCCEEEEEEc------CCeEEEEEC--CCCeEEE--EEeCCCCCEEEEEEcCCC
Q 003279 667 INNGSCAGVFKCQ--SGA-TQMRFQPRLGRILAAAI------ENYISILDV--ETQVCRL--KLQGHKNQVHSVCWNTSG 733 (834)
Q Consensus 667 l~s~~~i~~~~~~--~~i-~~l~~sp~g~~ll~~s~------dg~I~iwDl--~t~~~~~--~l~~h~~~I~sl~~spdg 733 (834)
+.+.+-...-... ... .+++.. ++..+++|+. ...+.+||+ .+.+-.. .+........+.+...++
T Consensus 175 ~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 253 (357)
T 2uvk_A 175 PSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISND 253 (357)
T ss_dssp TTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETT
T ss_pred CCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECC
Confidence 9887655443322 122 233333 4455666553 346788887 4332211 111111111111222355
Q ss_pred CEEEEEe-C----------------------CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---
Q 003279 734 EYLASVS-D----------------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--- 787 (834)
Q Consensus 734 ~~Lasgs-D----------------------g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg--- 787 (834)
++++.|+ + ..+.+||+.+.. ...+..+...... ..++.-++..++.|+.++
T Consensus 254 ~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~ 330 (357)
T 2uvk_A 254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK-WDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGGK 330 (357)
T ss_dssp EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGGC
T ss_pred EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc-eeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCC
Confidence 6666655 2 257899988753 2333333322222 222334667777787643
Q ss_pred ---eEEEEECCCCeEEE
Q 003279 788 ---TLELWNMTENKTLT 801 (834)
Q Consensus 788 ---~I~Iwdl~~~~~~~ 801 (834)
.|.++++++++.+.
T Consensus 331 ~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 331 AVTDSVLITVKDNKVTV 347 (357)
T ss_dssp EEEEEEEEEC-CCSCEE
T ss_pred EeeeEEEEEEcCcEeEe
Confidence 57777998888773
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.1 Score=55.28 Aligned_cols=210 Identities=10% Similarity=0.019 Sum_probs=105.1
Q ss_pred EEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeC-----C------CcEEEEECCCCceeeEe
Q 003279 608 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----N------SEIRYWSINNGSCAGVF 676 (834)
Q Consensus 608 ~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~-----D------g~I~lwDl~s~~~i~~~ 676 (834)
+++.|+ ..+.+||..+......................+ +.+++.|+. . ..+.+||..+.+....-
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKE-NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTT-CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEEC-CEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 344554 579999999877643222222122222222334 446666663 1 13788999887654332
Q ss_pred ecCCC--eeEEEEecCCCEEEEEEcC--------CeEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe--C-
Q 003279 677 KCQSG--ATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS--D- 741 (834)
Q Consensus 677 ~~~~~--i~~l~~sp~g~~ll~~s~d--------g~I~iwDl~t~~~~~~--l~~h~~~I~sl~~spdg~~Lasgs--D- 741 (834)
..... -.+++.. ++..+++|+.+ ..+.+||..+.+-... +...... .+++. -++++++.|+ +
T Consensus 84 ~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 84 PLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLS-HMDLVYVIGGKGSD 160 (315)
T ss_dssp CBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCTT
T ss_pred CCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEE-ECCEEEEEeCCCCC
Confidence 22211 1122222 45556666632 4699999988743221 1111111 12222 3556666655 2
Q ss_pred ----CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCeEEEeccCCC--CeE
Q 003279 742 ----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAHDK--LVS 810 (834)
Q Consensus 742 ----g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg-----~I~Iwdl~~~~~~~l~~h~~--~V~ 810 (834)
..+.+||+.+..- ..+..+........ ++. -++..++.|+.++ .+.+||+.+.+...+..... .-.
T Consensus 161 ~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 237 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEW-KELAPMQTARSLFG-ATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSL 237 (315)
T ss_dssp SCBCCCEEEEETTTTEE-EECCCCSSCCBSCE-EEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSC
T ss_pred CcccceEEEEeCCCCeE-EECCCCCCchhceE-EEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccce
Confidence 3689999887521 11111111111112 222 2566667776654 68999999887665432211 111
Q ss_pred EEEEeCCCCEEEEEecC
Q 003279 811 SLAASTVNGMVASASHD 827 (834)
Q Consensus 811 ~lafspdg~~LaSgs~D 827 (834)
+++. -++++++.|+.+
T Consensus 238 ~~~~-~~~~l~v~GG~~ 253 (315)
T 4asc_A 238 SLVS-LVGTLYAIGGFA 253 (315)
T ss_dssp EEEE-ETTEEEEEEEEE
T ss_pred eEEE-ECCEEEEECCcc
Confidence 2222 356777777764
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.1 Score=55.36 Aligned_cols=203 Identities=11% Similarity=0.036 Sum_probs=99.9
Q ss_pred eEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeC----CC-------cEEEEECCCCceeeEeecCC--Cee
Q 003279 617 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN----NS-------EIRYWSINNGSCAGVFKCQS--GAT 683 (834)
Q Consensus 617 ~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~----Dg-------~I~lwDl~s~~~i~~~~~~~--~i~ 683 (834)
.+.+||..+......................+ +.+++.|+. ++ .+.+||..+.+....-.... .-.
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQ-NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSS-SCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEEC-CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 48899998876543222211111222222333 446666662 11 27788988776543322211 122
Q ss_pred EEEEecCCCEEEEEEcC-------CeEEEEECCCCeEEEEEeCCCCCE--EEEEEcCCCCEEEEEe--C-----CeEEEE
Q 003279 684 QMRFQPRLGRILAAAIE-------NYISILDVETQVCRLKLQGHKNQV--HSVCWNTSGEYLASVS--D-----ELVRVW 747 (834)
Q Consensus 684 ~l~~sp~g~~ll~~s~d-------g~I~iwDl~t~~~~~~l~~h~~~I--~sl~~spdg~~Lasgs--D-----g~I~Iw 747 (834)
+++.. ++..+++|+.+ ..+.+||..+.+-... .....+. .+++. .++++++.|+ + ..+.+|
T Consensus 104 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~y 180 (318)
T 2woz_A 104 GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV-KNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIY 180 (318)
T ss_dssp EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE-CCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEE
T ss_pred ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC-CCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEE
Confidence 22222 55667777754 3588999987653322 1111111 12222 3566666654 2 258999
Q ss_pred EcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEeccCCCC--eEEEEEeCCCCE
Q 003279 748 SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDKL--VSSLAASTVNGM 820 (834)
Q Consensus 748 Dl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d-----g~I~Iwdl~~~~~~~l~~h~~~--V~~lafspdg~~ 820 (834)
|+.+..- ..+......... .+++. -++..++.|+.+ ..+.+||+.+.+...+...... -.+++ ..++++
T Consensus 181 d~~~~~W-~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i 256 (318)
T 2woz_A 181 NPKKGDW-KDLAPMKTPRSM-FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV-SLAGSL 256 (318)
T ss_dssp ETTTTEE-EEECCCSSCCBS-CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE-EETTEE
T ss_pred cCCCCEE-EECCCCCCCccc-ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE-EECCEE
Confidence 9987521 112111111111 22222 255666666643 3688999998876644322111 11222 235677
Q ss_pred EEEEecC
Q 003279 821 VASASHD 827 (834)
Q Consensus 821 LaSgs~D 827 (834)
++.|+.+
T Consensus 257 ~v~GG~~ 263 (318)
T 2woz_A 257 YAIGGFA 263 (318)
T ss_dssp EEECCBC
T ss_pred EEECCee
Confidence 7777754
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.021 Score=61.80 Aligned_cols=193 Identities=6% Similarity=-0.037 Sum_probs=104.0
Q ss_pred CEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEE--ccCCCcEEEEE-eCCCcEEEEECCCCceeeEeecCCCee
Q 003279 607 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF--HPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGAT 683 (834)
Q Consensus 607 ~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~f--spdg~~llasg-s~Dg~I~lwDl~s~~~i~~~~~~~~i~ 683 (834)
.+++.++.||.|+-+|..+++.....-.....++....- .+.+..+++.. ..||.|..++..+|.....+.....+.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 478899999999999998877533332221122222110 01122344443 579999999999886655554322111
Q ss_pred --EEEEe-----------cCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCC--CC-----EEEEEEc-----CCCCEEEE
Q 003279 684 --QMRFQ-----------PRLGRILAAAIENYISILDVETQVCRLKLQGHK--NQ-----VHSVCWN-----TSGEYLAS 738 (834)
Q Consensus 684 --~l~~s-----------p~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~--~~-----I~sl~~s-----pdg~~Las 738 (834)
-+... ..++.+++++.++.+...|+++|+.+..+.... .. ..|.... ..+..|+.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 01111 146788999999999999999999999886421 10 1112111 12345555
Q ss_pred Ee-CCeEEEEEcCCCCCcee-EEEeecCCCc--e-EEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE
Q 003279 739 VS-DELVRVWSIGSGSKGEC-IHELSCTGNK--F-HSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 801 (834)
Q Consensus 739 gs-Dg~I~IwDl~s~~~~~~-i~~~~~~~~~--I-~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~ 801 (834)
+. +..+.+.+ +++..... .......... + ..-.++.++.+ ++++.|+.|+.+|..+++.+-
T Consensus 171 g~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred ecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 55 66777766 34421110 1111110000 0 00001123554 557888888888888777653
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0069 Score=65.61 Aligned_cols=187 Identities=9% Similarity=0.019 Sum_probs=103.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEeccC-CCCeEEEEEC--C-CCCEEEEE-eCCCeEEEEecCCCCceeeeecc---C
Q 003279 565 KLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFS--P-SLSRLATS-SADRTVRVWDTENPDYSLRTFTG---H 636 (834)
Q Consensus 565 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h-~~~I~~l~fs--p-dg~~Latg-s~Dg~I~IWDl~s~~~~i~~~~~---h 636 (834)
.++++++.||.|+-+|.++|+.+..+... ..++....-. + ++..++.. +.||.|+.++..++......-.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 37888999999999999999999888654 1222221100 1 22333333 57999999998776432211111 1
Q ss_pred CCCeEE---EEE-cc---CCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCe--------eEEEEe-----cCCCEEEE
Q 003279 637 STTVMS---LDF-HP---SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA--------TQMRFQ-----PRLGRILA 696 (834)
Q Consensus 637 ~~~V~s---l~f-sp---dg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i--------~~l~~s-----p~g~~ll~ 696 (834)
..++.. ..+ .+ .....+++++.+|.+...|+.+|+.+..+...... .|.... ..+..++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 122221 000 00 01346778999999999999999999998864321 122111 12456777
Q ss_pred EEcCCeEEEEECCCCeEEEEE-----eCCCCC--E-EEEEEcCCCCEEEEEeCCeEEEEEcCCCC
Q 003279 697 AAIENYISILDVETQVCRLKL-----QGHKNQ--V-HSVCWNTSGEYLASVSDELVRVWSIGSGS 753 (834)
Q Consensus 697 ~s~dg~I~iwDl~t~~~~~~l-----~~h~~~--I-~sl~~spdg~~LasgsDg~I~IwDl~s~~ 753 (834)
+..+..+.+.+ ++++ +..+ ..+... + .+-..+.|+.++++..||.|..+|..++.
T Consensus 171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~~~G~ 233 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFRI 233 (339)
T ss_dssp EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEECSTTCC
T ss_pred ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEECCCCEEEEEECCCCc
Confidence 77777777777 4443 2111 110000 0 00001124666665558888888887763
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.48 Score=53.31 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=61.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE--EEecc------CCCCeEEEEECCC---CCEEEEEeC-------
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEE------HTQWITDVRFSPS---LSRLATSSA------- 614 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~--~~l~~------h~~~I~~l~fspd---g~~Latgs~------- 614 (834)
..-++|+|.|||+++++-...+.|++++..+++.. ..+.. .......|+|+|+ +..|+.+..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 34679999999987776544357988886555433 23321 2456779999995 455544432
Q ss_pred ------CCeEEEEecCCCC-------ceeeeec-cCCCCeEEEEEccCCCcEEEEEe
Q 003279 615 ------DRTVRVWDTENPD-------YSLRTFT-GHSTTVMSLDFHPSKEDLLCSCD 657 (834)
Q Consensus 615 ------Dg~I~IWDl~s~~-------~~i~~~~-~h~~~V~sl~fspdg~~llasgs 657 (834)
...|..|++.... ..+..+. ........|+|.|+|..++.+++
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 2356666654321 1111121 11234789999999875554443
|
| >3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0017 Score=73.34 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=6.6
Q ss_pred hhhHHHHHHHHHh
Q 003279 53 FEWWSVFWDIFIA 65 (834)
Q Consensus 53 ~eww~~Fwd~f~a 65 (834)
.+.|.++.+.+..
T Consensus 337 ~~~~~~~~~~~~~ 349 (449)
T 3iot_A 337 SAFWYAVRTAVIN 349 (449)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555554443
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=96.49 E-value=1.3 Score=48.22 Aligned_cols=256 Identities=6% Similarity=-0.054 Sum_probs=120.8
Q ss_pred CCCeEEEEEcC--CCCEEEEEeCCC----cEEEEeCCCCeEEEEecc--------------CCCCeEEEEECC-C-CCEE
Q 003279 552 TSKVESCHFSP--DGKLLATGGHDK----KAVLWCTESFTVKSTLEE--------------HTQWITDVRFSP-S-LSRL 609 (834)
Q Consensus 552 ~~~V~sl~fSp--dg~~Lasgs~Dg----~I~IWd~~t~~~~~~l~~--------------h~~~I~~l~fsp-d-g~~L 609 (834)
...|.+|++.| ++.++| ++..| .|...+ +.++.-..+.. +...|.+|++.| + ...|
T Consensus 54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred CCceEEEEECCCCCCeEEE-EecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence 34699999998 454444 44444 444432 22322222211 112578899987 2 4556
Q ss_pred EEEeCCCeEEEEecCCCCceeeeec-------------------cCCCCeEEEEEccCC-CcEEEEEeCCCcEEEEECCC
Q 003279 610 ATSSADRTVRVWDTENPDYSLRTFT-------------------GHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINN 669 (834)
Q Consensus 610 atgs~Dg~I~IWDl~s~~~~i~~~~-------------------~h~~~V~sl~fspdg-~~llasgs~Dg~I~lwDl~s 669 (834)
+.++..+.|...+-. ......+. .....|.+|.++|.. ..+++ +..++.|...+ ..
T Consensus 132 ~~g~~~ggl~~S~Dg--G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v-g~~~ggl~~s~-Dg 207 (394)
T 3b7f_A 132 YAGTSPQGLFRSTDH--GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI-GMSSGGVFEST-DA 207 (394)
T ss_dssp EEEEETTEEEEESST--TSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE-EEETBEEEEES-ST
T ss_pred EEEecCCcEEEEcCC--CCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE-EECCCCEEEEC-CC
Confidence 666556655544322 22122221 112457899998843 33443 43344444332 22
Q ss_pred CceeeEeec--------------CCCeeEEEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEEeC--CC---CCEEEEEE
Q 003279 670 GSCAGVFKC--------------QSGATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKLQG--HK---NQVHSVCW 729 (834)
Q Consensus 670 ~~~i~~~~~--------------~~~i~~l~~sp~-g~~ll~~s~dg~I~iwDl~t~~~~~~l~~--h~---~~I~sl~~ 729 (834)
++.-..+.. ...+.++.++|. .+.++++.. +.|...+-. ++.-..+.. .. ..+.++++
T Consensus 208 G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~-~gl~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~ 285 (394)
T 3b7f_A 208 GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH-CGIYRMDRR-EGVWKRIGDAMPREVGDIGFPIVV 285 (394)
T ss_dssp TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-TEEEEEETT-TTEEECGGGGSCTTTCSCEEEEEE
T ss_pred CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-CeEEEeCCC-CCcceECCCCCCCCCccceEEEEE
Confidence 222121111 123788899886 356666654 445555432 222222221 11 34667888
Q ss_pred cCC--CCEEEEEe-----------CCeEEEEEcCCC-CCceeEEE-eecCCC----ceEEEEEeCCC-CEEEEEEcCCeE
Q 003279 730 NTS--GEYLASVS-----------DELVRVWSIGSG-SKGECIHE-LSCTGN----KFHSCVFHPTF-PSLLVIGCYETL 789 (834)
Q Consensus 730 spd--g~~Lasgs-----------Dg~I~IwDl~s~-~~~~~i~~-~~~~~~----~I~svafspdg-~~L~sgs~dg~I 789 (834)
+|. +.+++... ++...||....+ .....+.. +..... ....++++|.. ..|++++.++.|
T Consensus 286 ~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l 365 (394)
T 3b7f_A 286 HQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI 365 (394)
T ss_dssp CSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred CCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence 763 34444431 223456655443 22222211 111000 11357788753 457777666666
Q ss_pred EEEECCCCeEEEeccCCCCeEEEEEe
Q 003279 790 ELWNMTENKTLTLSAHDKLVSSLAAS 815 (834)
Q Consensus 790 ~Iwdl~~~~~~~l~~h~~~V~~lafs 815 (834)
+.-+-.......+..+-..|.+|.|.
T Consensus 366 ~~S~D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 366 WASADEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp EEESSTTSBCEEEECSCSCEEEEEEE
T ss_pred EEECCCCCCceEcccCCCCeeEEEEe
Confidence 54432222233344444567777764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.14 Score=64.28 Aligned_cols=219 Identities=10% Similarity=0.178 Sum_probs=133.1
Q ss_pred CCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCc
Q 003279 572 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 651 (834)
Q Consensus 572 ~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~ 651 (834)
....|.|.|+.++..+.+-. -.--+...+|..+.||.-. ..++.|||+++... +..+.- ...|..=.|-.+..
T Consensus 46 ~~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~k-lks~~~-~e~VvfWkWis~~~- 118 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTM-TDDVTFWKWISLNT- 118 (1630)
T ss_pred CCceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhh-hccccc-CCCceEEEecCCCe-
Confidence 34478999988765442211 1112344677777776664 77999999987543 444433 34566556665433
Q ss_pred EEEEEeCCCcEEEEECCC-CceeeEeec-----CCCeeEEEEecCCCEEEEEEc-------CCeEEEEECCCCeEEEEEe
Q 003279 652 LLCSCDNNSEIRYWSINN-GSCAGVFKC-----QSGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQ 718 (834)
Q Consensus 652 llasgs~Dg~I~lwDl~s-~~~i~~~~~-----~~~i~~l~~sp~g~~ll~~s~-------dg~I~iwDl~t~~~~~~l~ 718 (834)
+.+++ +..|+.|++.. ..+++.|.. ...|.....+++.++++..+- .|.+.+|..+.+. ...+.
T Consensus 119 l~lVT--~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~ie 195 (1630)
T 1xi4_A 119 VALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIE 195 (1630)
T ss_pred eEEEc--CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhh
Confidence 33232 56899999974 234444432 345777788888888876654 4788888887643 23445
Q ss_pred CCCCCEEEEEEcC---CCCEEEEEe----CCeEEEEEcCCC---CC--c-eeEEEe-e--cCCCceEEEEEeCCCCEEEE
Q 003279 719 GHKNQVHSVCWNT---SGEYLASVS----DELVRVWSIGSG---SK--G-ECIHEL-S--CTGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 719 ~h~~~I~sl~~sp---dg~~Lasgs----Dg~I~IwDl~s~---~~--~-~~i~~~-~--~~~~~I~svafspdg~~L~s 782 (834)
||......+.... ...+++.+. .+.++|.++... .. . +.+..+ . ....-..++..++....++.
T Consensus 196 gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~ 275 (1630)
T 1xi4_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (1630)
T ss_pred HhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEE
Confidence 5655444433321 122333333 268999998653 10 0 111111 1 11334467788888889999
Q ss_pred EEcCCeEEEEECCCCeEE
Q 003279 783 IGCYETLELWNMTENKTL 800 (834)
Q Consensus 783 gs~dg~I~Iwdl~~~~~~ 800 (834)
.+..|.|++||+.++.++
T Consensus 276 itk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 276 ITKYGYIHLYDLETGTCI 293 (1630)
T ss_pred EecCceEEEEecccchhh
Confidence 999999999999999877
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.091 Score=55.46 Aligned_cols=214 Identities=7% Similarity=-0.010 Sum_probs=105.7
Q ss_pred CCCEEEEEeC----CCeEEEEecCCCCceeee-eccCCCCeEEEEEccCCCcEEEEEeC----C-----CcEEEEECCCC
Q 003279 605 SLSRLATSSA----DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDN----N-----SEIRYWSINNG 670 (834)
Q Consensus 605 dg~~Latgs~----Dg~I~IWDl~s~~~~i~~-~~~h~~~V~sl~fspdg~~llasgs~----D-----g~I~lwDl~s~ 670 (834)
++.+++.|+. -..+.+||..+....... +....... +++.. + +.+++.|+. + ..+.+||+.+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-G-GLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-T-TEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE-C-CEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 4555666653 235788888765532211 11111111 22222 3 456666664 2 46889999877
Q ss_pred ceeeEeecCC--CeeEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-
Q 003279 671 SCAGVFKCQS--GATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS- 740 (834)
Q Consensus 671 ~~i~~~~~~~--~i~~l~~sp~g~~ll~~s~d-----g~I~iwDl~t~~~~~~--l~~h~~~I~sl~~spdg~~Lasgs- 740 (834)
+....-.... .-.+++.. ++..+++|+.+ ..+.+||+.+.+-... +........++.+ ++++++.|+
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 177 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF 177 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred eEeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence 6443322211 11222222 55566666543 4689999987643322 1111111122222 566666665
Q ss_pred C-----CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEeccCCC--C
Q 003279 741 D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDK--L 808 (834)
Q Consensus 741 D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d-----g~I~Iwdl~~~~~~~l~~h~~--~ 808 (834)
+ ..+.+||+.+..- ..+..+.........+.+ ++..++.|+.+ ..+.+||+.+.+...+..... .
T Consensus 178 ~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 254 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNEW-RMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRS 254 (308)
T ss_dssp CSSCBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCB
T ss_pred CCCCcCceEEEEeCCCCeE-eeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCcc
Confidence 3 3689999877521 111111111111222222 55566666554 469999999887764432211 1
Q ss_pred eEEEEEeCCCCEEEEEecCC
Q 003279 809 VSSLAASTVNGMVASASHDK 828 (834)
Q Consensus 809 V~~lafspdg~~LaSgs~DG 828 (834)
-.+++. -++++++.|+.++
T Consensus 255 ~~~~~~-~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 255 ALGITV-HQGRIYVLGGYDG 273 (308)
T ss_dssp SCEEEE-ETTEEEEECCBCS
T ss_pred ceEEEE-ECCEEEEEcCcCC
Confidence 112222 3577777777543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.2 Score=50.47 Aligned_cols=172 Identities=14% Similarity=0.005 Sum_probs=98.6
Q ss_pred CcEEEEEeCCCcEEEEECCCCc------eeeEeec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE------EE
Q 003279 650 EDLLCSCDNNSEIRYWSINNGS------CAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVC------RL 715 (834)
Q Consensus 650 ~~llasgs~Dg~I~lwDl~s~~------~i~~~~~--~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~------~~ 715 (834)
+.+|++..+| +|+.=....+. ....+.. -..+..++|+|++...++ .+|.++-.+..+... ..
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence 3456666666 66555444443 1222222 246889999997764444 888888888755211 11
Q ss_pred EEe--CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeE----EEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003279 716 KLQ--GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECI----HELSCTGNKFHSCVFHPTFPSLLVIGCYETL 789 (834)
Q Consensus 716 ~l~--~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i----~~~~~~~~~I~svafspdg~~L~sgs~dg~I 789 (834)
.+- +-. ...++.|+++|.+.++ +||.|+-++-.+......+ ..-...-..+..+.|.|+|...++ . |+.+
T Consensus 81 ~IG~~Gw~-~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav-~-dg~l 156 (236)
T 1tl2_A 81 KIGNGGWN-QFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAV-H-GQQF 156 (236)
T ss_dssp EEECSCGG-GCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEE-E-TTEE
T ss_pred Eecccccc-cceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEE-e-CCcE
Confidence 121 111 1468999999999888 8898887775432221111 111112256899999999985444 4 7776
Q ss_pred EEEECCCCeE-------EEec-cCCCCeEEEEEeCCCCEEEEEecCCcE
Q 003279 790 ELWNMTENKT-------LTLS-AHDKLVSSLAASTVNGMVASASHDKCV 830 (834)
Q Consensus 790 ~Iwdl~~~~~-------~~l~-~h~~~V~~lafspdg~~LaSgs~DG~I 830 (834)
+-.....+.. ..+. ..-.....+.|.+++.+.++. +|.+
T Consensus 157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 5443332210 0111 223344557789988877665 6754
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.21 Score=53.73 Aligned_cols=185 Identities=10% Similarity=-0.005 Sum_probs=91.8
Q ss_pred CCCEEEEEeC-C---------CcEEEEeCCCCeEEEEeccC-C--CCeEEEEECCCCCEEEEEeCC--------------
Q 003279 563 DGKLLATGGH-D---------KKAVLWCTESFTVKSTLEEH-T--QWITDVRFSPSLSRLATSSAD-------------- 615 (834)
Q Consensus 563 dg~~Lasgs~-D---------g~I~IWd~~t~~~~~~l~~h-~--~~I~~l~fspdg~~Latgs~D-------------- 615 (834)
++++++.|+. + ..+.+||..+.+-...-... . ....++. .++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ 142 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEA 142 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhc
Confidence 5667777765 2 46889998876543321111 1 1122233 467788888765
Q ss_pred -------------------------CeEEEEecCCCCceeeeeccCCCCe-EEEEEccCCCcEEEEEeC------CCcEE
Q 003279 616 -------------------------RTVRVWDTENPDYSLRTFTGHSTTV-MSLDFHPSKEDLLCSCDN------NSEIR 663 (834)
Q Consensus 616 -------------------------g~I~IWDl~s~~~~i~~~~~h~~~V-~sl~fspdg~~llasgs~------Dg~I~ 663 (834)
..+.+||+.+.......-....... .+++.. ++.+++.|+. ...+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~ 220 (357)
T 2uvk_A 143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVF 220 (357)
T ss_dssp TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEE
T ss_pred CCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceE
Confidence 5789999987665332211111111 233332 2446666653 34677
Q ss_pred EEEC--CCCceeeEeec--CCC-eeEEEEecCCCEEEEEEcC----------------------CeEEEEECCCC--eEE
Q 003279 664 YWSI--NNGSCAGVFKC--QSG-ATQMRFQPRLGRILAAAIE----------------------NYISILDVETQ--VCR 714 (834)
Q Consensus 664 lwDl--~s~~~i~~~~~--~~~-i~~l~~sp~g~~ll~~s~d----------------------g~I~iwDl~t~--~~~ 714 (834)
+||+ .+.+....-.. ... ....+...++..+++|+.+ ..+.+||+.+. ..+
T Consensus 221 ~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~ 300 (357)
T 2uvk_A 221 ELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS 300 (357)
T ss_dssp EEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE
T ss_pred EEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC
Confidence 7887 44433322111 111 1222333355666666632 25789998865 344
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEe-CC------eEEEEEcCCCC
Q 003279 715 LKLQGHKNQVHSVCWNTSGEYLASVS-DE------LVRVWSIGSGS 753 (834)
Q Consensus 715 ~~l~~h~~~I~sl~~spdg~~Lasgs-Dg------~I~IwDl~s~~ 753 (834)
..+........++ .-++++++.|+ ++ .|.++++++++
T Consensus 301 ~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 301 GELSQGRAYGVSL--PWNNSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp EECSSCCBSSEEE--EETTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred CCCCCCcccceeE--EeCCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 3333222222222 23566666666 32 46667887763
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.094 Score=65.92 Aligned_cols=235 Identities=11% Similarity=0.164 Sum_probs=140.5
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccC-
Q 003279 558 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH- 636 (834)
Q Consensus 558 l~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h- 636 (834)
.-.+|..+.||.=. ..++.|||+++...+..+.-. ..|..=.|-.+. .|+..+ +..|+.|++.....+.+.+..|
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhcccccC-CCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence 44577777777654 579999999988777766543 456666776544 344442 4579999998655566666555
Q ss_pred ---CCCeEEEEEccCCCcEEEEEe------CCCcEEEEECCCCceeeEeecCC-CeeEEEE--ecCCCEEEEEEc----C
Q 003279 637 ---STTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQS-GATQMRF--QPRLGRILAAAI----E 700 (834)
Q Consensus 637 ---~~~V~sl~fspdg~~llasgs------~Dg~I~lwDl~s~~~i~~~~~~~-~i~~l~~--sp~g~~ll~~s~----d 700 (834)
...|.....+++.+.++++|= -.|.+.+|..+.+..- .+.++. ....+.. .+....+++-.. .
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ-~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch-hhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence 456777788888887776663 3578888888754321 111100 0001111 011112222211 3
Q ss_pred CeEEEEECCCC---eE------EEEEeC---CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003279 701 NYISILDVETQ---VC------RLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 767 (834)
Q Consensus 701 g~I~iwDl~t~---~~------~~~l~~---h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 767 (834)
+.++|.++... .. +..+.. ..+...++..++.-.+++..+ -|.|.+||+.++ .++..-+.....
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~---~~i~~~ris~~~ 302 (1630)
T 1xi4_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGET 302 (1630)
T ss_pred ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc---hhhhhccccCCc
Confidence 68888888542 11 111111 123344666777666666666 899999999998 666665555666
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 768 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 768 I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
|...+.+....-+++....|.|.-..+....++
T Consensus 303 iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 303 IFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred eEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 666555554444666667777766666665555
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.22 Score=54.99 Aligned_cols=143 Identities=10% Similarity=0.114 Sum_probs=93.9
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC-----CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe--------
Q 003279 646 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----SGATQMRFQPRLGRILAAAIENYISILDVETQV-------- 712 (834)
Q Consensus 646 spdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~-----~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~-------- 712 (834)
+.++..+++.- ++.||..++......+.+... ..+..+..+|+|.+++..+ +..|.|..+..+.
T Consensus 29 ~~n~t~i~~a~--~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 29 SQNGTRIVFIQ--DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp ETTTTEEEEEE--TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred EcCCCEEEEEE--CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccc
Confidence 34555555443 578888888755555555543 2688899999988877764 5688888877321
Q ss_pred ----EEEEEeC------CCCCEEEEEEcCC---CCEEEEEe-CCeEEEEEcCCCCCceeE--------EEeecCCCceEE
Q 003279 713 ----CRLKLQG------HKNQVHSVCWNTS---GEYLASVS-DELVRVWSIGSGSKGECI--------HELSCTGNKFHS 770 (834)
Q Consensus 713 ----~~~~l~~------h~~~I~sl~~spd---g~~Lasgs-Dg~I~IwDl~s~~~~~~i--------~~~~~~~~~I~s 770 (834)
..+.+.- ...+|..+.|+|- +..|++-. |+.|++||+..... ++. ..+......|.+
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~-~P~~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE-KPIVLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS-CCEEESCCCSEEESCSSCCCEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC-CCcchhccccccCCCcccceEEE
Confidence 1223321 2567999999994 34555555 99999999987322 222 111222367889
Q ss_pred EEEeCCCCEEEEEE--cCCeEEEE
Q 003279 771 CVFHPTFPSLLVIG--CYETLELW 792 (834)
Q Consensus 771 vafspdg~~L~sgs--~dg~I~Iw 792 (834)
++|..++-.|++.+ ..|.|+-.
T Consensus 185 ~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999888888866 67777643
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.2 Score=50.43 Aligned_cols=176 Identities=10% Similarity=-0.070 Sum_probs=96.7
Q ss_pred CCEEEEEeCCCeEEEEecCCCC---c--eeeeecc-CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC
Q 003279 606 LSRLATSSADRTVRVWDTENPD---Y--SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 679 (834)
Q Consensus 606 g~~Latgs~Dg~I~IWDl~s~~---~--~i~~~~~-h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~ 679 (834)
...|++...| +|++=...... . ....+-. .=..+.+++|+|++. |.++ .+|.++-.+..+.....-+...
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE--eCCeEEEECCCCCCcccccccc
Confidence 4566777777 65554443322 1 1112211 124678999999876 4444 5788777776553222111111
Q ss_pred C--------CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE-------EEEEeCCCCCEEEEEEcCCCCEEEEEeCCeE
Q 003279 680 S--------GATQMRFQPRLGRILAAAIENYISILDVETQVC-------RLKLQGHKNQVHSVCWNTSGEYLASVSDELV 744 (834)
Q Consensus 680 ~--------~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~-------~~~l~~h~~~I~sl~~spdg~~LasgsDg~I 744 (834)
. ....+.|.+++...++ .||.|+-++-.+... ...-..-=..+..|.|.|+|.+.++. |+.+
T Consensus 80 t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~l 156 (236)
T 1tl2_A 80 KKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQF 156 (236)
T ss_dssp EEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEE
T ss_pred cEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcE
Confidence 1 1478899999876666 669998887643110 11111112467999999999999988 8885
Q ss_pred EEEEcCCCCCce---eEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003279 745 RVWSIGSGSKGE---CIHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLE 790 (834)
Q Consensus 745 ~IwDl~s~~~~~---~i~~~~-~~~~~I~svafspdg~~L~sgs~dg~I~ 790 (834)
+-....+..... ....+. ..-.....+.|.+++...++. ++.|+
T Consensus 157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence 443322111000 111111 222344556788888755554 66444
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.16 Score=60.56 Aligned_cols=221 Identities=5% Similarity=0.003 Sum_probs=111.3
Q ss_pred CCCEEEEEeCC----CeEEEEecCCCCceeeeec------cCCCCeEEEEEcc-CCCcEEEEEeCC------CcEEEEEC
Q 003279 605 SLSRLATSSAD----RTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHP-SKEDLLCSCDNN------SEIRYWSI 667 (834)
Q Consensus 605 dg~~Latgs~D----g~I~IWDl~s~~~~i~~~~------~h~~~V~sl~fsp-dg~~llasgs~D------g~I~lwDl 667 (834)
++.+++.|+.+ ..+.+||+.+..+...... .....-.+++... + +.+++.|+.+ ..+.+||+
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~-~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN-NQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTT-TEEEEECCBSSTTCBCCCCEEEET
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccC-CEEEEEcCCCCCCCccccEEEEeC
Confidence 34455555432 3577888877654322201 1111112233332 4 4466666643 35889999
Q ss_pred CCCceeeEeec--CCCeeEEEEecCCCEEEEEEcCC--eEEEEECCCCeEEEEEe-----CCCCCEEEEEEcCC-CCEEE
Q 003279 668 NNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQ-----GHKNQVHSVCWNTS-GEYLA 737 (834)
Q Consensus 668 ~s~~~i~~~~~--~~~i~~l~~sp~g~~ll~~s~dg--~I~iwDl~t~~~~~~l~-----~h~~~I~sl~~spd-g~~La 737 (834)
.+.+....-.. ...-.+++...++..+++|+.++ .+.+||..+..-...-. .......++.+..+ +++++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 88654433221 12223344434778888887654 79999998875332211 11112233555555 56666
Q ss_pred EEe---C-----CeEEEEEcCCCCC-----ceeEEEeecCCCceEEEEEeCCCCEEEEEEc--------CCeEEEEECCC
Q 003279 738 SVS---D-----ELVRVWSIGSGSK-----GECIHELSCTGNKFHSCVFHPTFPSLLVIGC--------YETLELWNMTE 796 (834)
Q Consensus 738 sgs---D-----g~I~IwDl~s~~~-----~~~i~~~~~~~~~I~svafspdg~~L~sgs~--------dg~I~Iwdl~~ 796 (834)
.|+ + +.+.+||+.+..- ...+.........-.+++...++..+++|+. ...|.+||+.+
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 665 2 3589999988741 1222221111111223333443666666664 24699999998
Q ss_pred CeEEEeccCC--------CCe-EEEEEeCCCCEEEEEec
Q 003279 797 NKTLTLSAHD--------KLV-SSLAASTVNGMVASASH 826 (834)
Q Consensus 797 ~~~~~l~~h~--------~~V-~~lafspdg~~LaSgs~ 826 (834)
.+........ ..+ .++....++++++.|+.
T Consensus 636 ~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 636 ETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp TEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred CeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence 8765322110 000 23333455677777764
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=95.90 E-value=3.1 Score=46.78 Aligned_cols=231 Identities=10% Similarity=0.014 Sum_probs=115.3
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCC---eEEEEec---------cCCCCeEEEEECCC----CCEEEEEeC--
Q 003279 554 KVESCHFSPDGK-LLATGGHDKKAVLWCTESF---TVKSTLE---------EHTQWITDVRFSPS----LSRLATSSA-- 614 (834)
Q Consensus 554 ~V~sl~fSpdg~-~Lasgs~Dg~I~IWd~~t~---~~~~~l~---------~h~~~I~~l~fspd----g~~Latgs~-- 614 (834)
.-+.|+|.|||. .|+++...|.|++++.... ..+..+. ........|+|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 357899999996 4556678899999975422 1222221 11456889999996 433333322
Q ss_pred C----------CeEEEEecCCC---------Cceeeeec--cCCCCeEEEEEccCCCcEEEEEeCC--------------
Q 003279 615 D----------RTVRVWDTENP---------DYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNN-------------- 659 (834)
Q Consensus 615 D----------g~I~IWDl~s~---------~~~i~~~~--~h~~~V~sl~fspdg~~llasgs~D-------------- 659 (834)
+ ..|.-|.+... ...+..+. ........|+|.||+..++.+|+..
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~ 174 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSD 174 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCS
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCC
Confidence 1 14555665421 11122221 1123467899999987555444321
Q ss_pred --CcEEEEECCCC------c-------------eeeEee-cCCCeeEEEEecCC-----C-EEEEEEcCC----eEEEEE
Q 003279 660 --SEIRYWSINNG------S-------------CAGVFK-CQSGATQMRFQPRL-----G-RILAAAIEN----YISILD 707 (834)
Q Consensus 660 --g~I~lwDl~s~------~-------------~i~~~~-~~~~i~~l~~sp~g-----~-~ll~~s~dg----~I~iwD 707 (834)
|.|.-.|.... . ....+. .......++|+|.. . .++++...+ .-.|..
T Consensus 175 ~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~~ 254 (463)
T 2wg3_C 175 FTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQ 254 (463)
T ss_dssp CTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC------CEEEEE
T ss_pred CCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecccCCCCCCCCeEee
Confidence 33444454431 0 001111 12346678999962 3 344333212 123333
Q ss_pred CCCC------eEEEEEeCCC-CCEEEEEEcC-------CCCEEEEEeCCeEEEEEcCCCCCceeEEEe-e--------cC
Q 003279 708 VETQ------VCRLKLQGHK-NQVHSVCWNT-------SGEYLASVSDELVRVWSIGSGSKGECIHEL-S--------CT 764 (834)
Q Consensus 708 l~t~------~~~~~l~~h~-~~I~sl~~sp-------dg~~LasgsDg~I~IwDl~s~~~~~~i~~~-~--------~~ 764 (834)
+..+ .++..+..|. ..+..+.|.. .+.+|+..-.+.|....+...........+ . ..
T Consensus 255 i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 334 (463)
T 2wg3_C 255 IIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYF 334 (463)
T ss_dssp EC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSCSCC
T ss_pred eccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCcccccccc
Confidence 3222 2334443221 4677887753 234555444666666665443211111112 1 12
Q ss_pred CCceEEEEEeCCCCEEEEEE
Q 003279 765 GNKFHSCVFHPTFPSLLVIG 784 (834)
Q Consensus 765 ~~~I~svafspdg~~L~sgs 784 (834)
...+..+.+.|+|..+++..
T Consensus 335 ~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 335 SGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp CSEEEEEEECTTCCEEEEEE
T ss_pred cCcceEEEECCCCCEEEEec
Confidence 35789999999998766665
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.67 E-value=1.1 Score=51.17 Aligned_cols=127 Identities=13% Similarity=0.130 Sum_probs=88.0
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC------ce-------eeEeecCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003279 638 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG------SC-------AGVFKCQSGATQMRFQPRLGRILAAAIENYIS 704 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~------~~-------i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~ 704 (834)
.....+.++|||+++++++-.+.++.++|++.- +. +......-+....+|.++|.-+.+...|..|.
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence 345578899999999999988999999998741 11 33344466788999999984444555799999
Q ss_pred EEECCCC----------eEEEEEeCCCCCEEEEEE------cCCCCEEEEEe----CC----------eEEEEEcCCCCC
Q 003279 705 ILDVETQ----------VCRLKLQGHKNQVHSVCW------NTSGEYLASVS----DE----------LVRVWSIGSGSK 754 (834)
Q Consensus 705 iwDl~t~----------~~~~~l~~h~~~I~sl~~------spdg~~Lasgs----Dg----------~I~IwDl~s~~~ 754 (834)
.|++... ..+.++.-|-.+- .+.- .++|++|++.. |. .-.++|+.. .+
T Consensus 403 kWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG-dk 480 (638)
T 3sbq_A 403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG-DE 480 (638)
T ss_dssp EEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS-SS
T ss_pred EEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC-Cc
Confidence 9998753 4566666665433 3333 57899999876 43 347888854 44
Q ss_pred ceeEEEeecCCC
Q 003279 755 GECIHELSCTGN 766 (834)
Q Consensus 755 ~~~i~~~~~~~~ 766 (834)
.+.++.......
T Consensus 481 M~lv~D~P~~~E 492 (638)
T 3sbq_A 481 MKLVHDGPTFAE 492 (638)
T ss_dssp CEEEEEEEESSC
T ss_pred eEEEecCCCCCC
Confidence 566666554433
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.52 E-value=2.3 Score=45.46 Aligned_cols=263 Identities=7% Similarity=-0.003 Sum_probs=139.9
Q ss_pred CEEEEEeCCCcEEEEeCCCCe-------EEEEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEec---CCC-----Cc
Q 003279 565 KLLATGGHDKKAVLWCTESFT-------VKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENP-----DY 628 (834)
Q Consensus 565 ~~Lasgs~Dg~I~IWd~~t~~-------~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl---~s~-----~~ 628 (834)
.++++.+.+|.|+--.+.+.+ -+..+. ...+.+..+........|+.-+..|.++.... ... ..
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~ 83 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ 83 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence 467788888888876543211 111111 12344555555555566777777887665543 221 11
Q ss_pred eeeeec--cCCCCeEEEEEccC--CCcEEEEEeCCCcEEEEECCCC-------ceeeEeecCCCeeEEEEecCCCEEEEE
Q 003279 629 SLRTFT--GHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNG-------SCAGVFKCQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 629 ~i~~~~--~h~~~V~sl~fspd--g~~llasgs~Dg~I~lwDl~s~-------~~i~~~~~~~~i~~l~~sp~g~~ll~~ 697 (834)
++..+. .....|.++...++ ....++..+.+|.|+...+... .....+...+.+..+........++..
T Consensus 84 ~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~ 163 (327)
T 3uc1_A 84 HVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLV 163 (327)
T ss_dssp EHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEE
T ss_pred EHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEE
Confidence 111111 12455666544332 2446778889999999887542 222233445667777666677889999
Q ss_pred EcCCeEEEEECC--C---------CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC------ceeEE
Q 003279 698 AIENYISILDVE--T---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------GECIH 759 (834)
Q Consensus 698 s~dg~I~iwDl~--t---------~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~------~~~i~ 759 (834)
+..|.+..+... . |.....+. ....|.++...+++.+|+..+ .|.++...+..-.. .....
T Consensus 164 T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~ 242 (327)
T 3uc1_A 164 SANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTV 242 (327)
T ss_dssp ETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESS
T ss_pred ECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEE
Confidence 999998888776 2 22222232 345677776666666666666 88888888654211 11111
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-------Ee--ccCCCCeEEEEEeCC-CCEEEEEecCC
Q 003279 760 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-------TL--SAHDKLVSSLAASTV-NGMVASASHDK 828 (834)
Q Consensus 760 ~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-------~l--~~h~~~V~~lafspd-g~~LaSgs~DG 828 (834)
.+......+..+....+...++..+.+|.+..++...-... .. ......|.++...+. ...+.+.+.+|
T Consensus 243 ~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~g 321 (327)
T 3uc1_A 243 MYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDANG 321 (327)
T ss_dssp CCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC-------------
T ss_pred EecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecCC
Confidence 22222344555555555667888888888777776432221 11 123455666655543 34455555554
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=95.50 E-value=1 Score=53.72 Aligned_cols=237 Identities=9% Similarity=-0.005 Sum_probs=124.0
Q ss_pred EEE-EcCCCCEEEEEeC-----CCcEEEEeCCCCeEEE-Eec-cCCC------CeEEEEECCCCCEEEEEe---------
Q 003279 557 SCH-FSPDGKLLATGGH-----DKKAVLWCTESFTVKS-TLE-EHTQ------WITDVRFSPSLSRLATSS--------- 613 (834)
Q Consensus 557 sl~-fSpdg~~Lasgs~-----Dg~I~IWd~~t~~~~~-~l~-~h~~------~I~~l~fspdg~~Latgs--------- 613 (834)
.+. ++||+++++.+-. -..|+++|+++++.+. .+. .-+. ....++|..+ .-++.+.
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~~ 211 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEITS 211 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBCT
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCcCc
Confidence 344 8899998776532 2479999999998873 121 0000 1134477633 3444332
Q ss_pred --CCCeEEEEecCCCCc-eeeeeccCCCCe-EEEEEccCCCc----EEEEEeCC---CcEEEEECCC--CceeeEeecCC
Q 003279 614 --ADRTVRVWDTENPDY-SLRTFTGHSTTV-MSLDFHPSKED----LLCSCDNN---SEIRYWSINN--GSCAGVFKCQS 680 (834)
Q Consensus 614 --~Dg~I~IWDl~s~~~-~i~~~~~h~~~V-~sl~fspdg~~----llasgs~D---g~I~lwDl~s--~~~i~~~~~~~ 680 (834)
....|+.|.+.+... ....+.+....+ .+...++++.. ++++.+.+ ..+++.|... ++.. .+....
T Consensus 212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~ 290 (711)
T 4hvt_A 212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQ-KINMPS 290 (711)
T ss_dssp TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEE-ECCSCT
T ss_pred CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcce-EeecCC
Confidence 135799998876532 223344333333 34455666664 45554422 4566777653 3322 222222
Q ss_pred CeeEEEEecCCCEEEEE----------EcCCeEEEEECCCCe-------EEEE-Ee-CCCCCEEEEEEcCCCCEEEEEe-
Q 003279 681 GATQMRFQPRLGRILAA----------AIENYISILDVETQV-------CRLK-LQ-GHKNQVHSVCWNTSGEYLASVS- 740 (834)
Q Consensus 681 ~i~~l~~sp~g~~ll~~----------s~dg~I~iwDl~t~~-------~~~~-l~-~h~~~I~sl~~spdg~~Lasgs- 740 (834)
... +..+.++..++.. ...+.|.++|+.++. .... +. .....+..+.|..+ .++++..
T Consensus 291 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~ 368 (711)
T 4hvt_A 291 DAT-LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYD 368 (711)
T ss_dssp TCE-EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEE
T ss_pred cce-EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEE
Confidence 222 2334444444422 135679999987631 1122 32 23346778888876 4455444
Q ss_pred CC--eEEEEEcCCCCCceeEEE-eecC-CCceEEEEEeCCCCEEEEE-EcC---CeEEEEECCCCeEE
Q 003279 741 DE--LVRVWSIGSGSKGECIHE-LSCT-GNKFHSCVFHPTFPSLLVI-GCY---ETLELWNMTENKTL 800 (834)
Q Consensus 741 Dg--~I~IwDl~s~~~~~~i~~-~~~~-~~~I~svafspdg~~L~sg-s~d---g~I~Iwdl~~~~~~ 800 (834)
++ .|.++|+.++.. .+.. +... ...+..+.+++++..+++. ++. ..++.+|+. ++..
T Consensus 369 ~~~~~l~~~~~~~g~~--~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~ 433 (711)
T 4hvt_A 369 NVVAKVVTFTLENEQW--TKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HELK 433 (711)
T ss_dssp TTEEEEEEECEETTEE--CCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCEE
T ss_pred CCEEEEEEEECCCCce--EEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcEE
Confidence 66 577887765520 1122 2211 2456666677777554443 332 378888887 5443
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=95.25 E-value=4.3 Score=44.07 Aligned_cols=209 Identities=10% Similarity=-0.013 Sum_probs=100.1
Q ss_pred CEEEEEeCCCcEEEEeCCC-C---eEEEEeccCCCCeEEEEECC-CCCEEEEEeCCC----eEEEEecCCCCceeeeec-
Q 003279 565 KLLATGGHDKKAVLWCTES-F---TVKSTLEEHTQWITDVRFSP-SLSRLATSSADR----TVRVWDTENPDYSLRTFT- 634 (834)
Q Consensus 565 ~~Lasgs~Dg~I~IWd~~t-~---~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg----~I~IWDl~s~~~~i~~~~- 634 (834)
..|.+|+..| +.+++... + ...... .....|.+|++.| +...|.+++..| .|... ..+......+.
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s--~D~G~tW~~~~~ 98 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS--DDGGGNWTEATR 98 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE--SSTTSCCEECSB
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe--CCCCCCceECCc
Confidence 3677777766 55554332 2 222111 2345699999998 333444444444 34433 22221111111
Q ss_pred -----c--------CCCCeEEEEEccC--CCcEEEEEeCCCcEEEEECCCCceeeEee--------------------cC
Q 003279 635 -----G--------HSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK--------------------CQ 679 (834)
Q Consensus 635 -----~--------h~~~V~sl~fspd--g~~llasgs~Dg~I~lwDl~s~~~i~~~~--------------------~~ 679 (834)
. ....|.+|++.|. ...++ ++...+.|...+-. ++.-..+. ..
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~-~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~ 176 (394)
T 3b7f_A 99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY-AGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDG 176 (394)
T ss_dssp CCCCCCCC----CCCCCEEEEEEECCTTSTTCEE-EEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCC
T ss_pred cccCCCcccccccccccceeEEEeCCCCCCCEEE-EEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCC
Confidence 0 1125778999873 34344 44445555544322 22211111 11
Q ss_pred CCeeEEEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEEeC-----C--------CCCEEEEEEcCC-CCEEEEEeCCeE
Q 003279 680 SGATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKLQG-----H--------KNQVHSVCWNTS-GEYLASVSDELV 744 (834)
Q Consensus 680 ~~i~~l~~sp~-g~~ll~~s~dg~I~iwDl~t~~~~~~l~~-----h--------~~~I~sl~~spd-g~~LasgsDg~I 744 (834)
..+.++.++|. .+.++++..++.|...+-. ++.-..+.. + ...+.+|+++|+ ...|+++.++.|
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl 255 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFESTDA-GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGI 255 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEESST-TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEE
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEECCC-CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeE
Confidence 24678888873 4566666666655544322 221111110 0 124889999986 356666665556
Q ss_pred EEEEcCCCCCceeEEEeec--CC---CceEEEEEeCC-CCEEEEEE
Q 003279 745 RVWSIGSGSKGECIHELSC--TG---NKFHSCVFHPT-FPSLLVIG 784 (834)
Q Consensus 745 ~IwDl~s~~~~~~i~~~~~--~~---~~I~svafspd-g~~L~sgs 784 (834)
...+-. +. ....+.. .. ..+.+++++|. ...|+++.
T Consensus 256 ~~s~D~-G~---tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t 297 (394)
T 3b7f_A 256 YRMDRR-EG---VWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFP 297 (394)
T ss_dssp EEEETT-TT---EEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred EEeCCC-CC---cceECCCCCCCCCccceEEEEECCCCCCEEEEEe
Confidence 555422 21 1111111 11 23567788763 34455554
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.77 Score=54.61 Aligned_cols=151 Identities=12% Similarity=0.130 Sum_probs=85.7
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCeEEEE--eccCCCCeEEEEECCCCCEEEEEeCCC--eEEEEecCCCCceeee
Q 003279 563 DGKLLATGGHD------KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRT 632 (834)
Q Consensus 563 dg~~Lasgs~D------g~I~IWd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~Dg--~I~IWDl~s~~~~i~~ 632 (834)
++++++.||.+ ..+.+||..+.+-... +..... -.+++...++++++.|+.++ .+.+||+.+..+....
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 77788888754 3578899887543322 211111 12333334788888887655 6999999886643222
Q ss_pred e----ccCCCCeEEEEEccCCCcEEEEEeC--C-----CcEEEEECCCCc------eeeEee---cCCCeeEEEEecCCC
Q 003279 633 F----TGHSTTVMSLDFHPSKEDLLCSCDN--N-----SEIRYWSINNGS------CAGVFK---CQSGATQMRFQPRLG 692 (834)
Q Consensus 633 ~----~~h~~~V~sl~fspdg~~llasgs~--D-----g~I~lwDl~s~~------~i~~~~---~~~~i~~l~~sp~g~ 692 (834)
. ........++.+..+...+++.|+. + ..+.+||+.+.. ...... ....-.+++...++.
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~ 609 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK 609 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE
Confidence 1 1112222335555553556767765 2 468899998876 222211 111122333344356
Q ss_pred EEEEEEc--------CCeEEEEECCCCeEE
Q 003279 693 RILAAAI--------ENYISILDVETQVCR 714 (834)
Q Consensus 693 ~ll~~s~--------dg~I~iwDl~t~~~~ 714 (834)
.+++|+. ...|.+||+.+.+-.
T Consensus 610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 610 LLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 7777764 346999999987544
|
| >3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A | Back alignment and structure |
|---|
Probab=95.12 E-value=0.006 Score=68.77 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=6.9
Q ss_pred hHHHHHHHHHhhcc
Q 003279 55 WWSVFWDIFIARTN 68 (834)
Q Consensus 55 ww~~Fwd~f~a~~~ 68 (834)
.|..+|+++.....
T Consensus 335 ~~~~~~~~~~~~~~ 348 (449)
T 3iot_A 335 QMSAFWYAVRTAVI 348 (449)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 34455555554444
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=94.97 E-value=6.1 Score=44.34 Aligned_cols=229 Identities=13% Similarity=0.069 Sum_probs=118.1
Q ss_pred CCeEEEEECCCCC-EEEEEeCCCeEEEEecCCCC--ceeeeec---------cCCCCeEEEEEccC---CCcEEEEEeC-
Q 003279 595 QWITDVRFSPSLS-RLATSSADRTVRVWDTENPD--YSLRTFT---------GHSTTVMSLDFHPS---KEDLLCSCDN- 658 (834)
Q Consensus 595 ~~I~~l~fspdg~-~Latgs~Dg~I~IWDl~s~~--~~i~~~~---------~h~~~V~sl~fspd---g~~llasgs~- 658 (834)
..-+.|+|.|++. .|+++...|.|++++..... ..+..+. ........|+|+|+ +..++++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3467999999986 56666789999999754321 1111111 11356789999996 2334433322
Q ss_pred -C----------CcEEEEECCCC----------ceeeEeec---CCCeeEEEEecCCCEEEEEEcCC-------------
Q 003279 659 -N----------SEIRYWSINNG----------SCAGVFKC---QSGATQMRFQPRLGRILAAAIEN------------- 701 (834)
Q Consensus 659 -D----------g~I~lwDl~s~----------~~i~~~~~---~~~i~~l~~sp~g~~ll~~s~dg------------- 701 (834)
+ ..|.-|.+..+ +.+..+.. ......+.|.||+..+++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 1 14555666421 22222221 23467899999997777666432
Q ss_pred ----eEEEEECCCC---------------------eEEEEEeCCCCCEEEEEEcCC-----CC-EEEEEeC-C----eEE
Q 003279 702 ----YISILDVETQ---------------------VCRLKLQGHKNQVHSVCWNTS-----GE-YLASVSD-E----LVR 745 (834)
Q Consensus 702 ----~I~iwDl~t~---------------------~~~~~l~~h~~~I~sl~~spd-----g~-~LasgsD-g----~I~ 745 (834)
.|.-+|.... ..+.. .+|.+ ...++|+|. |. +++++.. + .-.
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a-~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e 251 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFA-HGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSAR 251 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEE-ECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEE-ECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence 3444444431 01111 12333 346899986 44 3443321 2 233
Q ss_pred EEEcCCCCC---ceeEEEeecCC-CceEEEEEeCCCC------EEEEEEcCCeEEEEECCCCe----EEEec--------
Q 003279 746 VWSIGSGSK---GECIHELSCTG-NKFHSCVFHPTFP------SLLVIGCYETLELWNMTENK----TLTLS-------- 803 (834)
Q Consensus 746 IwDl~s~~~---~~~i~~~~~~~-~~I~svafspdg~------~L~sgs~dg~I~Iwdl~~~~----~~~l~-------- 803 (834)
|..+..+.. ..++..+..+. ..+..+.|-.... .++++...+.|....++... ...+.
T Consensus 252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 331 (463)
T 2wg3_C 252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCR 331 (463)
T ss_dssp EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSC
T ss_pred EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCccccc
Confidence 444433321 12344443321 4566676643221 25556555777766665432 11221
Q ss_pred -cCCCCeEEEEEeCCCCEEEEEe
Q 003279 804 -AHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 804 -~h~~~V~~lafspdg~~LaSgs 825 (834)
.....+.++.+.|||.++++..
T Consensus 332 ~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 332 GYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp SCCCSEEEEEEECTTCCEEEEEE
T ss_pred ccccCcceEEEECCCCCEEEEec
Confidence 1235789999999999877765
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=5.9 Score=43.21 Aligned_cols=165 Identities=10% Similarity=0.093 Sum_probs=98.6
Q ss_pred cEEEEECCCC--ceeeEeecC-------CCeeEEEEe---cC----CCEEEEEEc-CCeEEEEECCCCeEEEEEeC----
Q 003279 661 EIRYWSINNG--SCAGVFKCQ-------SGATQMRFQ---PR----LGRILAAAI-ENYISILDVETQVCRLKLQG---- 719 (834)
Q Consensus 661 ~I~lwDl~s~--~~i~~~~~~-------~~i~~l~~s---p~----g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~---- 719 (834)
.|.+||+.++ +.++.+... +.+..+.+. +. +.+++.+.. .+.|.|||+.+++..+.+..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5667888888 777777652 346778877 22 345555553 57899999999876655421
Q ss_pred C--------------CCCEEEEEEcCC----CCEEEEEeCCeEEEEEcC-----CCCCceeEEEeecCC--CceEEEEEe
Q 003279 720 H--------------KNQVHSVCWNTS----GEYLASVSDELVRVWSIG-----SGSKGECIHELSCTG--NKFHSCVFH 774 (834)
Q Consensus 720 h--------------~~~I~sl~~spd----g~~LasgsDg~I~IwDl~-----s~~~~~~i~~~~~~~--~~I~svafs 774 (834)
. ...|..|+++|+ ++.|+...=..-++|.+. .......+..+-... ..-...+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D 283 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD 283 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Confidence 0 236788999998 788887772223444432 221112222222222 334456675
Q ss_pred -CCCCEEEEEEcCCeEEEEECCC-C----e--EEEeccCCCCeEEEEEeCCCCEEEEEe
Q 003279 775 -PTFPSLLVIGCYETLELWNMTE-N----K--TLTLSAHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 775 -pdg~~L~sgs~dg~I~Iwdl~~-~----~--~~~l~~h~~~V~~lafspdg~~LaSgs 825 (834)
.+|..+++--..+.|..|+..+ . . .+.....-..+..+.+..+|.+.++++
T Consensus 284 ~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 284 PKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp TTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred CCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 5666555555667999999876 1 1 112112233578888888887666654
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=94.08 E-value=1.5 Score=45.82 Aligned_cols=240 Identities=13% Similarity=0.034 Sum_probs=122.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeee
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 633 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~ 633 (834)
.|..|+..... .++. . ||.|+.|-....-.+..-......|..|+...+. .++. . ||.|+.|-...... +-.-
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gq-lg~P 97 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQ-TTVP 97 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTST-TCCC
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCC-CCCC
Confidence 35666655432 2333 4 8888888644321111111122357777776443 3333 4 89999998664322 1111
Q ss_pred ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC-ceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003279 634 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV 712 (834)
Q Consensus 634 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~-~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~ 712 (834)
..-...|..|+.... +.+ .-. ||.|+.|-.... +.-........|..++.-. .+.++.. +|.|+.|-....-
T Consensus 98 ~~~~~~v~~ia~G~~--hs~-al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~--~~~~~l~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 98 AEARSGVDAIAAGAW--ASY-ALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV--YTALAVK-NGGVIAWGDNYFG 170 (282)
T ss_dssp GGGSSSEEEEEEETT--EEE-EEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS--SEEEEEE-TTEEEEEECCTTS
T ss_pred cccCCCeEEEECcCC--EEE-EEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEccc--CEEEEEE-CCEEEEecCCCCC
Confidence 111346777776533 233 334 899999977542 2211111234455555433 3344444 7899988765321
Q ss_pred EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003279 713 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 792 (834)
Q Consensus 713 ~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iw 792 (834)
.+..-......|..|+...+.. ++. .|+.|+.|-.......- .-......|..++..... .++.. |+.|+.|
T Consensus 171 qlg~p~~~~~~v~~i~~G~~hs-~al-~~G~v~~wG~n~~gqlg---~p~~~~~~v~~i~~G~~h--~~al~-~g~v~~w 242 (282)
T 3qhy_B 171 QTTVPAEAQSGVDDVAGGIFHS-LAL-KDGKVIAWGDNRYKQTT---VPTEALSGVSAIASGEWY--SLALK-NGKVIAW 242 (282)
T ss_dssp TTSCCGGGGSSEEEEEECSSEE-EEE-ETTEEEEEECCTTSTTC---CCGGGGSSCCEEEECSSC--EEEEE-TTEEEEE
T ss_pred CCCCceecCCCeEEEEecCCEE-EEE-ECCeEEEEECCCCCCCC---CCcccCCCceEEEcCCCE--EEEEE-CCEEEEe
Confidence 1000001134577776654433 344 69999999765432111 000112345555544433 33344 8999999
Q ss_pred ECCCCeEEEeccCCCCeEEEEEeCCC
Q 003279 793 NMTENKTLTLSAHDKLVSSLAASTVN 818 (834)
Q Consensus 793 dl~~~~~~~l~~h~~~V~~lafspdg 818 (834)
-......+.+ ...|..|+.....
T Consensus 243 G~n~~gq~~v---~~~v~~iaaG~~h 265 (282)
T 3qhy_B 243 GSSRTAPSSV---QSGVSSIEAGPNA 265 (282)
T ss_dssp STTCCCCGGG---SSCEEEEEECSSC
T ss_pred cCCCCccccC---CCCcEEEEECcCe
Confidence 7665443322 3467777765544
|
| >1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=94.07 E-value=5.6 Score=42.37 Aligned_cols=233 Identities=8% Similarity=0.054 Sum_probs=128.9
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCe----EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC---CC-----ce
Q 003279 562 PDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---PD-----YS 629 (834)
Q Consensus 562 pdg~~Lasgs~Dg~I~IWd~~t~~----~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s---~~-----~~ 629 (834)
|+..++++.+.+|.|+--.+.+.+ .-..++.. +.+..+........|+..+..|.++-+.... .. .+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 566788899999999877544221 11123333 3444544444566777778888876665431 11 11
Q ss_pred eee-e-ccCCCCeEEEEEccC--CCcEEEEEeCCCcEEEEECCC--------CceeeEeecCCCeeEEEEecCCCEEEEE
Q 003279 630 LRT-F-TGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINN--------GSCAGVFKCQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 630 i~~-~-~~h~~~V~sl~fspd--g~~llasgs~Dg~I~lwDl~s--------~~~i~~~~~~~~i~~l~~sp~g~~ll~~ 697 (834)
+.. + ......|.++...++ ....++.++.+|.++...+.. +.....+...+.+..+........++..
T Consensus 82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~ 161 (323)
T 1wp5_A 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLV 161 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEE
T ss_pred hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEE
Confidence 111 1 112344665533332 133455788899999988742 2222233334566666666666789999
Q ss_pred EcCCeEEEEECCC---------CeEEEEEeCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCC------Cce-eEE
Q 003279 698 AIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGS------KGE-CIH 759 (834)
Q Consensus 698 s~dg~I~iwDl~t---------~~~~~~l~~h~~~I~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~------~~~-~i~ 759 (834)
+.+|.+..|+... |.....+. ....|.++...+++. .|++.+ .|..+..++..-. ... .+.
T Consensus 162 T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~ 240 (323)
T 1wp5_A 162 THNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILR 240 (323)
T ss_dssp ETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSC
T ss_pred eCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECee
Confidence 9999988887642 22222232 234566665444444 455555 8888888775421 111 111
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 760 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 760 ~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
.+......+..+....+...+++.+..|.+..+.+..
T Consensus 241 ~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 241 ELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred ecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 1222233455444444455677888888776666644
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=93.98 E-value=1.9 Score=44.92 Aligned_cols=216 Identities=13% Similarity=0.040 Sum_probs=113.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceee
Q 003279 595 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 674 (834)
Q Consensus 595 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~ 674 (834)
..|..|+..... .++. . ||.|+.|-...... +-........|..|+.... +.++. . ||.|+.|-....-.+.
T Consensus 24 ~~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gq-lg~p~~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 24 SGVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQ-LTMPAATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SSCCEEEECSSE-EEEE-E-TTEEEEEECCSSST-TSCCGGGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTC
T ss_pred CCCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCC-CCCCccCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCC
Confidence 357777775442 2333 5 99999998664332 1111112345777776533 34444 4 8999999876422111
Q ss_pred -EeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003279 675 -VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 752 (834)
Q Consensus 675 -~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~-~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~ 752 (834)
.......|..++... .+.++.. +|.|+.|-.... ..-. -......|..++...+..+ +.. |+.|+.|-....
T Consensus 96 ~P~~~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~-~~~~~~~i~~i~~G~~~~~-~l~-~G~v~~wG~n~~ 169 (282)
T 3qhy_B 96 VPAEARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTV-PAEAQSGVTALDGGVYTAL-AVK-NGGVIAWGDNYF 169 (282)
T ss_dssp CCGGGSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSC-CGGGGSSEEEEEECSSEEE-EEE-TTEEEEEECCTT
T ss_pred CCcccCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCC-CccCCCCeEEEEcccCEEE-EEE-CCEEEEecCCCC
Confidence 111234566666554 4555556 999999976542 1100 0112345777765433322 223 899999977653
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-eccCCCCeEEEEEeCCCCEEEEEecCCcEE
Q 003279 753 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCVK 831 (834)
Q Consensus 753 ~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~-l~~h~~~V~~lafspdg~~LaSgs~DG~I~ 831 (834)
.... ........|..++.-.. +.++. .++.|+.|-....-.+- -......|..|+..... .++.. ||.|+
T Consensus 170 gqlg---~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al~--~g~v~ 240 (282)
T 3qhy_B 170 GQTT---VPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLALK--NGKVI 240 (282)
T ss_dssp STTS---CCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEEE--TTEEE
T ss_pred CCCC---CceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEEE--CCEEE
Confidence 2211 00111245666655443 33333 68999999765432221 11123457777655433 33333 88888
Q ss_pred Ee
Q 003279 832 IW 833 (834)
Q Consensus 832 IW 833 (834)
.|
T Consensus 241 ~w 242 (282)
T 3qhy_B 241 AW 242 (282)
T ss_dssp EE
T ss_pred Ee
Confidence 88
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.50 E-value=10 Score=41.19 Aligned_cols=230 Identities=11% Similarity=0.117 Sum_probs=115.0
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEecCCCC---------c-eeeeecc-CCCCeEEEEEccCCCcEEEEEeCCCcEEEE
Q 003279 597 ITDVRFSPSLSRLATSSADRTVRVWDTENPD---------Y-SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 665 (834)
Q Consensus 597 I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~---------~-~i~~~~~-h~~~V~sl~fspdg~~llasgs~Dg~I~lw 665 (834)
|..|+.. ....+.-..||.|+.|-..... . ....+.. ....+..++++....+.+ .-..||.|+.|
T Consensus 55 i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~-al~~~G~v~~w 131 (389)
T 3kci_A 55 PVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCL-ALSSEGEVYSW 131 (389)
T ss_dssp EEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEE-EEETTSCEEEE
T ss_pred eEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEE-EEcCCCCEEEE
Confidence 4455442 3455666789999999644211 0 0111111 123344455554444344 45669999999
Q ss_pred ECCCCc-----------eeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC----------e-EEEEEeC-CCC
Q 003279 666 SINNGS-----------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ----------V-CRLKLQG-HKN 722 (834)
Q Consensus 666 Dl~s~~-----------~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~----------~-~~~~l~~-h~~ 722 (834)
-....- ....+.......-+.+.....+.++...+|.|+.|-.... . ....+.. ...
T Consensus 132 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~ 211 (389)
T 3kci_A 132 GEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGH 211 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTS
T ss_pred eCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCC
Confidence 654310 0111111122222333344567778888999999965320 1 1111211 234
Q ss_pred CEEEEEEcCC-CCEEEEEeCCeEEEEEcCCCCC-------ceeE-EEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003279 723 QVHSVCWNTS-GEYLASVSDELVRVWSIGSGSK-------GECI-HELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELW 792 (834)
Q Consensus 723 ~I~sl~~spd-g~~LasgsDg~I~IwDl~s~~~-------~~~i-~~~~~-~~~~I~svafspdg~~L~sgs~dg~I~Iw 792 (834)
.|..++.... ...++...|+.|+.|-...... .... ..+.. ....|..++.-. .+.++...++.|+.|
T Consensus 212 ~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~--~hs~alt~~G~v~~w 289 (389)
T 3kci_A 212 RVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGS--QFSVALTKSGAVYTW 289 (389)
T ss_dssp CEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEET--TEEEEEETTSCEEEE
T ss_pred eEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCC--CEEEEEeCCCeEEEE
Confidence 5777776542 3344444599999997543110 0011 11111 122455555443 355666788899999
Q ss_pred ECCCC------------eEEEecc-CCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 793 NMTEN------------KTLTLSA-HDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 793 dl~~~------------~~~~l~~-h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
-.... .+..+.. ....|..|+.. ....+....||.|+.|
T Consensus 290 G~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~w 341 (389)
T 3kci_A 290 GKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTW 341 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEE
T ss_pred eCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEe
Confidence 65321 1112221 12346666543 3344555788888887
|
| >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=93.29 E-value=9.6 Score=40.27 Aligned_cols=231 Identities=10% Similarity=0.054 Sum_probs=128.4
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEE---------EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC----
Q 003279 561 SPDGKLLATGGHDKKAVLWCTESFTVK---------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---- 627 (834)
Q Consensus 561 Spdg~~Lasgs~Dg~I~IWd~~t~~~~---------~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~---- 627 (834)
-++..++++.+.+|.|+-..+...+.. ..++.. +.+..+........++..+..|.++-+....-.
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 346678899999999998876543221 122333 345555555556678888899988777654210
Q ss_pred ----ce---eeeeccCCCCeEEEEEccC--CCcEEEEEeCCCcEEEEECCC-------CceeeEeecCCCeeEEEEecCC
Q 003279 628 ----YS---LRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPRL 691 (834)
Q Consensus 628 ----~~---i~~~~~h~~~V~sl~fspd--g~~llasgs~Dg~I~lwDl~s-------~~~i~~~~~~~~i~~l~~sp~g 691 (834)
.. ...+. ....|.++...++ ....++..+.+|.++...+.. |.....+...+.+..+......
T Consensus 84 ~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~ 162 (312)
T 1suu_A 84 ASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKD 162 (312)
T ss_dssp ----CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTT
T ss_pred cCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCC
Confidence 00 01112 2344555543321 223455678899999888743 2223333345567776666666
Q ss_pred CEEEEEEcCCeEEEEECCC---------CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC------Cc
Q 003279 692 GRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------KG 755 (834)
Q Consensus 692 ~~ll~~s~dg~I~iwDl~t---------~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~------~~ 755 (834)
..++..+.+|.+..+.... |.....+.. ...|.++....++..|++.+ .|.++.+++..-. ..
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kG 241 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATG 241 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCC
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCC
Confidence 7899999999999987653 223333332 45566666555555555555 8888888885421 11
Q ss_pred eeEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 756 ECIHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 756 ~~i~~~~-~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
..+..+. .....+..+....+...++..+..|.+.-...
T Consensus 242 v~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~ 281 (312)
T 1suu_A 242 YTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVA 281 (312)
T ss_dssp EECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEG
T ss_pred EEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 1111122 22234444333344555666777774443443
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.06 E-value=8 Score=40.12 Aligned_cols=197 Identities=10% Similarity=-0.018 Sum_probs=112.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEE---ecCCCCceeeeeccCCCCeEEEEEccC-CCcEEEEEeCCCcEEEEECCCC
Q 003279 595 QWITDVRFSPSLSRLATSSADRTVRVW---DTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNG 670 (834)
Q Consensus 595 ~~I~~l~fspdg~~Latgs~Dg~I~IW---Dl~s~~~~i~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~lwDl~s~ 670 (834)
+.+..+.......+|+.-+.+|.++-- ++......- +......|..+.. .+ .+..++..+.+|.|+...+..-
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~--ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~ 100 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS--LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEF 100 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC--CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc--cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHh
Confidence 344444444444556666677766543 332211100 1223456666644 32 2446778889999999987543
Q ss_pred ------ceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC---------CeEEEEEeCCCCCEEEEEEcCCCCE
Q 003279 671 ------SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEY 735 (834)
Q Consensus 671 ------~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t---------~~~~~~l~~h~~~I~sl~~spdg~~ 735 (834)
.....++..+.+..+........++..+..|.++.++... |.....+.. ...|.++...+++.+
T Consensus 101 ~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 101 EYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPY 179 (276)
T ss_dssp TTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSE
T ss_pred hhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCE
Confidence 2222334455676666666677899999999988887532 223223332 355666555555556
Q ss_pred EEEEe-CCeEEEEEcCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE--EECCC
Q 003279 736 LASVS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTE 796 (834)
Q Consensus 736 Lasgs-Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~I--wdl~~ 796 (834)
++..+ .|.++...+..-.. ..-+..+ .....+..+....+...++..+.+|.+.. ++...
T Consensus 180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 66656 88888888753211 1112222 23344555544444456788888887777 76543
|
| >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.61 E-value=12 Score=39.48 Aligned_cols=233 Identities=9% Similarity=0.060 Sum_probs=128.3
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEE---------EeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC---CCC--
Q 003279 562 PDGKLLATGGHDKKAVLWCTESFTVKS---------TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPD-- 627 (834)
Q Consensus 562 pdg~~Lasgs~Dg~I~IWd~~t~~~~~---------~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~---s~~-- 627 (834)
|+..++++.+.+|.|+--.+.+.+... .++.+ +.+..+........|+..+..|.++-+... ...
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 355678889999999887766543221 12222 344444444455677777788887666543 211
Q ss_pred ---ceee-ee-ccCCCCeEEEEEcc--CCCcEEEEEeCCCcEEEEECCC-------CceeeEeecCCCeeEEEEecCCCE
Q 003279 628 ---YSLR-TF-TGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPRLGR 693 (834)
Q Consensus 628 ---~~i~-~~-~~h~~~V~sl~fsp--dg~~llasgs~Dg~I~lwDl~s-------~~~i~~~~~~~~i~~l~~sp~g~~ 693 (834)
.++. .+ ......|.++...+ +....++..+.+|.++...+.. +.....+..++.+..+........
T Consensus 80 a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 80 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE 159 (307)
T ss_dssp SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCE
T ss_pred CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCE
Confidence 1111 11 12344566664422 1233455778899999987742 222222333456666666666678
Q ss_pred EEEEEcCCeEEEEECCC---------CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC------Ccee
Q 003279 694 ILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------KGEC 757 (834)
Q Consensus 694 ll~~s~dg~I~iwDl~t---------~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~------~~~~ 757 (834)
++..+.+|.+..++... |.....+. ....|.++....++..|++.+ .|.++..++..-. ....
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~ 238 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI 238 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEE
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEE
Confidence 99999999988887642 22222333 345666666555555566666 8888888774321 1111
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 758 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 758 i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
...+....+.+..+....+...|+..+.+|.+.-+++..
T Consensus 239 ~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 239 SIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp SSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred eeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 222333334555554444456677788888776666544
|
| >3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=92.32 E-value=15 Score=39.91 Aligned_cols=225 Identities=9% Similarity=0.016 Sum_probs=120.4
Q ss_pred ECCCCCEEEEEeCCCeEEEEecCC------C--CceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE---CCC-
Q 003279 602 FSPSLSRLATSSADRTVRVWDTEN------P--DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS---INN- 669 (834)
Q Consensus 602 fspdg~~Latgs~Dg~I~IWDl~s------~--~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwD---l~s- 669 (834)
+-++..++++.+.+|.|+--.+.. + ......+. ..+.+..+........++ ..+..|.++-+. +..
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll-~fT~~G~~~~~~~~eip~~ 80 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLL-TFTSSGKVFWLPVHQLPEA 80 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEE-EEETTSEEEEEEGGGSCBC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEE-EEeCCCeEEEEEHHHCcCC
Confidence 346778999999999999876532 1 11112222 345666665555545455 445577666554 322
Q ss_pred -----Cceee---EeecCCCeeEEEEec---CCCEEEEEEcCCeEEEEECCC-------CeEEEEEeCCCCCEEEEEEcC
Q 003279 670 -----GSCAG---VFKCQSGATQMRFQP---RLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNT 731 (834)
Q Consensus 670 -----~~~i~---~~~~~~~i~~l~~sp---~g~~ll~~s~dg~I~iwDl~t-------~~~~~~l~~h~~~I~sl~~sp 731 (834)
|..+. .+.....|..+.... .+.+|+.++..|.++...+.. +.....+.. ...+..+....
T Consensus 81 ~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~ 159 (370)
T 3l6v_A 81 GSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTD 159 (370)
T ss_dssp CTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEEC
T ss_pred CcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeC
Confidence 22221 123345566655442 456899999999999887642 233333433 34455444444
Q ss_pred CC-CEEEEEeCCeEEEEEcCCCCC------ceeEEEeecCCCceEEEEEeC-----------------------------
Q 003279 732 SG-EYLASVSDELVRVWSIGSGSK------GECIHELSCTGNKFHSCVFHP----------------------------- 775 (834)
Q Consensus 732 dg-~~LasgsDg~I~IwDl~s~~~------~~~i~~~~~~~~~I~svafsp----------------------------- 775 (834)
.. .+++.+.+|.+..|+...-.. ......+. ....|.++...+
T Consensus 160 ~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~ 238 (370)
T 3l6v_A 160 GDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVI 238 (370)
T ss_dssp SCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC---------------------------
T ss_pred CCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEecccccccccccccccccccccccccccccc
Confidence 44 444444488888887643210 11111121 233444444433
Q ss_pred ------CCCEEEEEEcCCeEEEEECCCCeE--------E--EeccCCCCeEEEEEeCCCCEEEEEecCCcE
Q 003279 776 ------TFPSLLVIGCYETLELWNMTENKT--------L--TLSAHDKLVSSLAASTVNGMVASASHDKCV 830 (834)
Q Consensus 776 ------dg~~L~sgs~dg~I~Iwdl~~~~~--------~--~l~~h~~~V~~lafspdg~~LaSgs~DG~I 830 (834)
++..|++++..|..+...+..-.. . .+....+.+..+.+..+...|+..+..|.+
T Consensus 239 ~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~ 309 (370)
T 3l6v_A 239 DVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTL 309 (370)
T ss_dssp --------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCE
T ss_pred ccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeE
Confidence 456899999999888887643221 1 232333455555444444445555555554
|
| >1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* | Back alignment and structure |
|---|
Probab=91.94 E-value=18 Score=43.41 Aligned_cols=147 Identities=16% Similarity=0.147 Sum_probs=77.8
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeEEEEeccC-------CCCeEEEEECCC-CCEEEEEeCCCe----E
Q 003279 552 TSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPS-LSRLATSSADRT----V 618 (834)
Q Consensus 552 ~~~V~sl~fSpd-g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h-------~~~I~~l~fspd-g~~Latgs~Dg~----I 618 (834)
.+.|.+|+++|. ...+++++..+.|...+ +.++.-..+..+ ...|.+|++.|. ...++.+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 457999999995 35666677777776665 334433334332 246999999984 344444443211 3
Q ss_pred EEEecCCCCceeeeecc---------CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-------cCCCe
Q 003279 619 RVWDTENPDYSLRTFTG---------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------CQSGA 682 (834)
Q Consensus 619 ~IWDl~s~~~~i~~~~~---------h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-------~~~~i 682 (834)
.||.-..+......... ....+..++++|.....++.+...+.|. .....|+.=..+. ....+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Confidence 44544433332222211 0113567888886555565665344332 2222222111111 12457
Q ss_pred eEEEEecC-CCEEEEEEcC
Q 003279 683 TQMRFQPR-LGRILAAAIE 700 (834)
Q Consensus 683 ~~l~~sp~-g~~ll~~s~d 700 (834)
..+.++|. ...++++..+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEECTTSTTCEEEEESS
T ss_pred EEEEECCCCCCEEEEEEcC
Confidence 78888884 4466666654
|
| >3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=91.89 E-value=16 Score=39.52 Aligned_cols=234 Identities=11% Similarity=0.053 Sum_probs=133.1
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCC---------CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCC---C-
Q 003279 560 FSPDGKLLATGGHDKKAVLWCTES---------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---P- 626 (834)
Q Consensus 560 fSpdg~~Lasgs~Dg~I~IWd~~t---------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s---~- 626 (834)
+-++..++++.+.+|.|+--.+.+ +..-..++. .+.+..+........|+..+..|.++-+.... .
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 346788999999999999865432 222334443 45566666666667788788888877665431 1
Q ss_pred ----Cceeeee--ccCCCCeEEEEEcc--CCCcEEEEEeCCCcEEEEECCC-------CceeeEeecCCCeeEEEEecCC
Q 003279 627 ----DYSLRTF--TGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPRL 691 (834)
Q Consensus 627 ----~~~i~~~--~~h~~~V~sl~fsp--dg~~llasgs~Dg~I~lwDl~s-------~~~i~~~~~~~~i~~l~~sp~g 691 (834)
...+..+ ......|.++.... +....++.++..|.++...+.. +.....+.....+..+......
T Consensus 82 r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~ 161 (370)
T 3l6v_A 82 SNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGD 161 (370)
T ss_dssp TTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSC
T ss_pred cccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCC
Confidence 1111111 12345566654432 1233566788899999988643 2222233334556666666666
Q ss_pred CEEEEEEcCCeEEEEECCC---------CeEEEEEeCCCCCEEEEEEcC-------------------------------
Q 003279 692 GRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNT------------------------------- 731 (834)
Q Consensus 692 ~~ll~~s~dg~I~iwDl~t---------~~~~~~l~~h~~~I~sl~~sp------------------------------- 731 (834)
..++..+..|.+..|+... |.....+. ....|.++...+
T Consensus 162 ~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~ 240 (370)
T 3l6v_A 162 RDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV 240 (370)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC-----------------------------
T ss_pred ceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEecccccccccccccccccccccccccccccccc
Confidence 7899999999888887542 22222222 234455554433
Q ss_pred ----CCCEEEEEe-CCeEEEEEcCCCCC------ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 732 ----SGEYLASVS-DELVRVWSIGSGSK------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 732 ----dg~~Lasgs-Dg~I~IwDl~s~~~------~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
++..|++.+ .|..+...+..-.. ......+....+.+..+.+..+...|+..+..|.+.-..+.
T Consensus 241 ~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~ 315 (370)
T 3l6v_A 241 ADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGS 315 (370)
T ss_dssp ------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGG
T ss_pred ccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHh
Confidence 344666666 88888887753211 11111222233455555555555667777888866655543
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=91.74 E-value=10 Score=44.89 Aligned_cols=223 Identities=9% Similarity=0.049 Sum_probs=113.7
Q ss_pred EEEE-ECCCCCEEEEE-eC----CCeEEEEecCCCCceeeeec-cCCC------CeEEEEEccCCCcEEEEEe-------
Q 003279 598 TDVR-FSPSLSRLATS-SA----DRTVRVWDTENPDYSLRTFT-GHST------TVMSLDFHPSKEDLLCSCD------- 657 (834)
Q Consensus 598 ~~l~-fspdg~~Latg-s~----Dg~I~IWDl~s~~~~i~~~~-~h~~------~V~sl~fspdg~~llasgs------- 657 (834)
..+. ++|++++++.+ |. -..|+++|+.+++..-..+. .... ....++|..+ +.++++..
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCcC
Confidence 3444 78888876654 22 23799999998654222222 0000 1134477633 44554421
Q ss_pred ---CCCcEEEEECCCCc--eeeEeec--CCCeeEEEEecCCCE-----EEEEEcC---CeEEEEECCC--CeEEEEEeCC
Q 003279 658 ---NNSEIRYWSINNGS--CAGVFKC--QSGATQMRFQPRLGR-----ILAAAIE---NYISILDVET--QVCRLKLQGH 720 (834)
Q Consensus 658 ---~Dg~I~lwDl~s~~--~i~~~~~--~~~i~~l~~sp~g~~-----ll~~s~d---g~I~iwDl~t--~~~~~~l~~h 720 (834)
....|+.|.+-+.. -...+.. ..-......+.++++ ++..+.+ ..+++.|... ++ ...+...
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 289 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMP 289 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSC
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecC
Confidence 12468888887642 2233433 222334445566652 3333322 4567777653 33 2333222
Q ss_pred CCCEEEEEEcCCCCEEEEE-----------eCCeEEEEEcCCCCCc----eeEEE-e-ecCCCceEEEEEeCCCCEEEEE
Q 003279 721 KNQVHSVCWNTSGEYLASV-----------SDELVRVWSIGSGSKG----ECIHE-L-SCTGNKFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 721 ~~~I~sl~~spdg~~Lasg-----------sDg~I~IwDl~s~~~~----~~i~~-~-~~~~~~I~svafspdg~~L~sg 783 (834)
... .+..+.++.+++.. ..+.|.++|+.+.... ..... + ......+..+.|..+ ..+++.
T Consensus 290 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~ 366 (711)
T 4hvt_A 290 SDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLAT 366 (711)
T ss_dssp TTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEE
T ss_pred Ccc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEE
Confidence 221 12334455555532 1557899998764210 11112 2 223446777888876 455566
Q ss_pred EcCC--eEEEEECCCCe--EEE-ec-cCCCCeEEEEEeCCCC-EEEEEe
Q 003279 784 GCYE--TLELWNMTENK--TLT-LS-AHDKLVSSLAASTVNG-MVASAS 825 (834)
Q Consensus 784 s~dg--~I~Iwdl~~~~--~~~-l~-~h~~~V~~lafspdg~-~LaSgs 825 (834)
..++ .|+++|+.+++ ... +. ...+.|..+.+++++. ++++.+
T Consensus 367 ~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~s 415 (711)
T 4hvt_A 367 YDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIE 415 (711)
T ss_dssp EETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEE
T ss_pred EECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEe
Confidence 6666 67888877664 222 21 1134566666667665 444443
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=91.06 E-value=18 Score=38.44 Aligned_cols=195 Identities=12% Similarity=0.052 Sum_probs=108.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEe---CCC------CeEEEE---eccCCCCeEEE-EECC--CCCEEEEEeCCCeE
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWC---TES------FTVKST---LEEHTQWITDV-RFSP--SLSRLATSSADRTV 618 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd---~~t------~~~~~~---l~~h~~~I~~l-~fsp--dg~~Latgs~Dg~I 618 (834)
.+..+........|+.-+..|.++... +.. |..+.. +. ....|..+ .+.. +..++++++.+|.|
T Consensus 43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~i 121 (327)
T 3uc1_A 43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLV 121 (327)
T ss_dssp CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence 344444444455666666677766553 332 232211 22 23445554 4442 57899999999999
Q ss_pred EEEecCCCC------ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC--C---------CceeeEeecCCC
Q 003279 619 RVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--N---------GSCAGVFKCQSG 681 (834)
Q Consensus 619 ~IWDl~s~~------~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~--s---------~~~i~~~~~~~~ 681 (834)
+...+..-. .....+.. .+.+..+........++ ..+..|.+..+... . |.....+.....
T Consensus 122 Kr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il-l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~ 199 (327)
T 3uc1_A 122 KKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL-LVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDR 199 (327)
T ss_dssp EEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE-EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCC
T ss_pred EEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE-EEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCE
Confidence 998875411 11112222 34555555554444444 56668888888766 2 111122333456
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECCCC---------eEEEEEeCCCCCEEEEEEc-CCCCEEEEEeCCeEEEEEcCC
Q 003279 682 ATQMRFQPRLGRILAAAIENYISILDVETQ---------VCRLKLQGHKNQVHSVCWN-TSGEYLASVSDELVRVWSIGS 751 (834)
Q Consensus 682 i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~---------~~~~~l~~h~~~I~sl~~s-pdg~~LasgsDg~I~IwDl~s 751 (834)
|..+...+.+.+++.++..|.++...+..- .....+..-.+.+..+... .+..+++.+.+|.+..++...
T Consensus 200 Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 200 LLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 777777666779999999999988876421 1222222213345544443 334445555588777777653
|
| >1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* | Back alignment and structure |
|---|
Probab=91.04 E-value=32 Score=41.22 Aligned_cols=144 Identities=11% Similarity=0.150 Sum_probs=72.1
Q ss_pred CCCeEEEEECCC-CCEEEEEeCCCeEEEEecCCCCceeeeeccC-------CCCeEEEEEccCCCcEEEEEeCCCc----
Q 003279 594 TQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDNNSE---- 661 (834)
Q Consensus 594 ~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h-------~~~V~sl~fspdg~~llasgs~Dg~---- 661 (834)
...|.+|+++|. ...+++++..+.|...+=. ......+..+ ...|.+|+++|.....++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~Dg--G~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAG--TSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETT--TTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCC--CCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 468999999985 4566677777766555432 2222322221 2469999999864444444432211
Q ss_pred EEEE-ECCCCceeeEeecC----------CCeeEEEEecCC-CEEEEEEcCCeEEEEECCCC---eEEEEEe---CCCCC
Q 003279 662 IRYW-SINNGSCAGVFKCQ----------SGATQMRFQPRL-GRILAAAIENYISILDVETQ---VCRLKLQ---GHKNQ 723 (834)
Q Consensus 662 I~lw-Dl~s~~~i~~~~~~----------~~i~~l~~sp~g-~~ll~~s~dg~I~iwDl~t~---~~~~~l~---~h~~~ 723 (834)
-.|| ....|+.=..+... ..+..++++|.. +.++++...+.|.. ....+ +.+..+. .....
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTC
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCC
Confidence 2333 33334322222211 124568888754 44555543444322 22222 3222111 11245
Q ss_pred EEEEEEcCC-CCEEEEEe
Q 003279 724 VHSVCWNTS-GEYLASVS 740 (834)
Q Consensus 724 I~sl~~spd-g~~Lasgs 740 (834)
+..|.++|. +..++++.
T Consensus 171 ~~~i~~~p~~~~~~~~~~ 188 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASA 188 (789)
T ss_dssp EEEEEECTTSTTCEEEEE
T ss_pred eEEEEECCCCCCEEEEEE
Confidence 788999874 34454444
|
| >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.85 E-value=18 Score=38.03 Aligned_cols=223 Identities=10% Similarity=0.029 Sum_probs=117.4
Q ss_pred CCCCEEEEEeCCCeEEEEecCCCCce--------eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC---CC---
Q 003279 604 PSLSRLATSSADRTVRVWDTENPDYS--------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI---NN--- 669 (834)
Q Consensus 604 pdg~~Latgs~Dg~I~IWDl~s~~~~--------i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl---~s--- 669 (834)
|+..++++.+.+|.|+--.+.+-... ...+. ..+.+..+........++ ..+..|.++-+.. ..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll-~fT~~G~~~~~~~~elp~~~~ 78 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHIL-CFSSRGRVYSMKVYQLPEATR 78 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEE-EEETTSEEEEEEGGGSCCCCS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEE-EEECCCEEEEEEhhHCcCCCC
Confidence 34567889999999988776542110 01112 223444444444444444 4455777655543 22
Q ss_pred ---Cceee---EeecCCCeeEEEEe---cCCCEEEEEEcCCeEEEEECCC-------CeEEEEEeCCCCCEEEEEEc-CC
Q 003279 670 ---GSCAG---VFKCQSGATQMRFQ---PRLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWN-TS 732 (834)
Q Consensus 670 ---~~~i~---~~~~~~~i~~l~~s---p~g~~ll~~s~dg~I~iwDl~t-------~~~~~~l~~h~~~I~sl~~s-pd 732 (834)
|..+. .+.....|..+... .++.+++.++..|.++...+.. +.....+..+ +.+..+... .+
T Consensus 79 ~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~ 157 (307)
T 1zi0_A 79 GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE 157 (307)
T ss_dssp SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT
T ss_pred CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC
Confidence 22211 12334456665443 3456899999999999987642 2233334444 455554444 34
Q ss_pred CCEEEEEeCCeEEEEEcCCCCC------ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe--------
Q 003279 733 GEYLASVSDELVRVWSIGSGSK------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-------- 798 (834)
Q Consensus 733 g~~LasgsDg~I~IwDl~s~~~------~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~-------- 798 (834)
..+++.+++|.+..++...-.. ......+. ....|..+....++..|++.+..|.++..++..-.
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG 236 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG 236 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCC
T ss_pred CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCC
Confidence 4455555588888887753211 11111222 24456666555556779999999988888763211
Q ss_pred EE--EeccCCCCeEEEEEeCCCCEEEEEecCCcE
Q 003279 799 TL--TLSAHDKLVSSLAASTVNGMVASASHDKCV 830 (834)
Q Consensus 799 ~~--~l~~h~~~V~~lafspdg~~LaSgs~DG~I 830 (834)
.. .+....+.+..+....+..-|+..+.+|.+
T Consensus 237 ~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ 270 (307)
T 1zi0_A 237 VISIKVTERNGLVVGAVQVDDCDQIMMITDAGTL 270 (307)
T ss_dssp EESSCCCTTTCSEEEEEEECTTCEEEEEESSCCE
T ss_pred EEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcE
Confidence 11 222333555555444444445555566654
|
| >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=88.97 E-value=25 Score=36.96 Aligned_cols=189 Identities=12% Similarity=0.087 Sum_probs=108.1
Q ss_pred CCCCEEEEEeCCCeEEEEecCCCCce------e--eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC---C--
Q 003279 604 PSLSRLATSSADRTVRVWDTENPDYS------L--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---G-- 670 (834)
Q Consensus 604 pdg~~Latgs~Dg~I~IWDl~s~~~~------i--~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s---~-- 670 (834)
++..++++.+.+|.|+-..+..-... + ..+. ..+.+..+........++ ..+..|.++-+.... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll-~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLF-MISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEE-EEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEE-EEECCCeEEEEEHHHCCCCCc
Confidence 45678899999999998876532110 1 1112 234455554444434444 556688877666531 1
Q ss_pred ----ce---eeEeecCCCeeEEEEec---CCCEEEEEEcCCeEEEEECCC-------CeEEEEEeCCCCCEEEEEEcCCC
Q 003279 671 ----SC---AGVFKCQSGATQMRFQP---RLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNTSG 733 (834)
Q Consensus 671 ----~~---i~~~~~~~~i~~l~~sp---~g~~ll~~s~dg~I~iwDl~t-------~~~~~~l~~h~~~I~sl~~spdg 733 (834)
.. ...+.....+..+...+ +..+++.++..|.++...+.. +.....+.. .+.+..+....++
T Consensus 84 ~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 84 ASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred cCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 11 11123344555554443 467899999999999887743 333333443 4556555554444
Q ss_pred C-EEEEEeCCeEEEEEcCCC----C--CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 734 E-YLASVSDELVRVWSIGSG----S--KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 734 ~-~LasgsDg~I~IwDl~s~----~--~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
. +++++.+|.+..+.+..- . .......+. ....+..+....++..|++.+..|.++..++..
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 4 444445999888887542 1 111122222 244566666656667799999999988888743
|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=88.75 E-value=31 Score=37.66 Aligned_cols=227 Identities=4% Similarity=-0.002 Sum_probs=117.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc-----------eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 003279 595 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 663 (834)
Q Consensus 595 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~-----------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 663 (834)
..|..|+.. ....+.-..||.|+.|-...... ..-........|..|+... ...+.-..||.|+
T Consensus 75 ~~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~---~hs~al~~~G~v~ 149 (423)
T 3mvd_K 75 PDAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGD---SHSACLLEDGRVF 149 (423)
T ss_dssp SSEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECS---SEEEEEETTSCEE
T ss_pred CCceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCc---CeEEEEeCCCeEE
Confidence 346666664 44666667899999996543110 0011111234566666542 2334456799999
Q ss_pred EEEC--CC-Cce--------eeEeec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-------------------
Q 003279 664 YWSI--NN-GSC--------AGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQ------------------- 711 (834)
Q Consensus 664 lwDl--~s-~~~--------i~~~~~--~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~------------------- 711 (834)
.|-. .. +.+ ...... ...|..++ ....+.++...+|.|+.|-....
T Consensus 150 ~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va--~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~ 227 (423)
T 3mvd_K 150 AWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIA--SGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGK 227 (423)
T ss_dssp EEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEE--ECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTT
T ss_pred EEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEe--cCCCeEEEEecCCeEEEeeCCcCCccCCCccccccccccccc
Confidence 9985 32 211 111111 23344444 34567778888999999953321
Q ss_pred ----eEEEEEeCCCCCEEEEEEcCCCCEEEE-EeCCeEEEEEcCCCCC--------ceeEEEeecCCCceEEEEEeCCCC
Q 003279 712 ----VCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVWSIGSGSK--------GECIHELSCTGNKFHSCVFHPTFP 778 (834)
Q Consensus 712 ----~~~~~l~~h~~~I~sl~~spdg~~Las-gsDg~I~IwDl~s~~~--------~~~i~~~~~~~~~I~svafspdg~ 778 (834)
.+..........|..|+..... .++. ..++.|+.|-...... .............|..++. ...
T Consensus 228 ~~~~~p~~v~~~~~~~v~~i~~g~~~-~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~--G~~ 304 (423)
T 3mvd_K 228 RDLLRPTQLIITRAKPFEAIWATNYC-TFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG--GQH 304 (423)
T ss_dssp TTTSSCEEECCTTCCCEEEEEEETTE-EEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE--CSS
T ss_pred ccccCCeEEeecCCccEEEEEECCcE-EEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc--ccC
Confidence 1111111123356666554322 2232 2488899987543210 0111112222345555544 334
Q ss_pred EEEEEEcCCeEEEEECCCC-------------eEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 779 SLLVIGCYETLELWNMTEN-------------KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 779 ~L~sgs~dg~I~Iwdl~~~-------------~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
+.++...++.|+.|-.... .+..+......|..|+... .+.+.-..||.|+.|
T Consensus 305 ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~--~hs~alt~~G~v~~w 370 (423)
T 3mvd_K 305 HTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGE--VCSYAVTIDGKLYSW 370 (423)
T ss_dssp EEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEET--TEEEEEETTSCEEEE
T ss_pred eEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCC--CeEEEEcCCCCEEEE
Confidence 5667778889999965321 1112222333677777653 334444688888888
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=87.95 E-value=27 Score=36.06 Aligned_cols=194 Identities=11% Similarity=0.020 Sum_probs=108.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEE---eCCCCeEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEecCCCC-
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLW---CTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD- 627 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IW---d~~t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~s~~- 627 (834)
+.|.++.......+|+.-+.+|.++-- ++...+....+. ....|..+.... +..++++.+.+|.|+...+..-.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 345555544445566666677877654 333222111133 345566664421 46789999999999999876421
Q ss_pred ----ceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC---------CceeeEeecCCCeeEEEEecCCCEE
Q 003279 628 ----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVFKCQSGATQMRFQPRLGRI 694 (834)
Q Consensus 628 ----~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s---------~~~i~~~~~~~~i~~l~~sp~g~~l 694 (834)
.....+. ..+.+..+........++ ..+..|.+..++... |.....+.....+..+....++..+
T Consensus 103 ~~~G~~~i~lk-egD~l~~~~~~~~~~~il-l~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 103 KAQGMPIIKLT-EGDEVVSIASSVDETHIL-LFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYL 180 (276)
T ss_dssp CSTTEECSCCC-TTCCEEEEEECCSSCEEE-EEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEE
T ss_pred hcCCeEEEecC-CCCEEEEEEEeCCCCEEE-EEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEE
Confidence 1111222 235566665554444444 566788888887532 2122223334567776666667789
Q ss_pred EEEEcCCeEEEEECCC-------CeEEEEEeCCCCCEEEEEE-cCCCCEEEEEeCCeEEE--EEcC
Q 003279 695 LAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCW-NTSGEYLASVSDELVRV--WSIG 750 (834)
Q Consensus 695 l~~s~dg~I~iwDl~t-------~~~~~~l~~h~~~I~sl~~-spdg~~LasgsDg~I~I--wDl~ 750 (834)
+..+..|.++...+.. ++-+..+ ...+.+..+.. ..+..+++.+.+|.+.. +++.
T Consensus 181 l~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 181 LVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 9999999988887643 1222222 22334444433 33334444444777666 7654
|
| >1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1 | Back alignment and structure |
|---|
Probab=87.19 E-value=0.63 Score=39.35 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhcCCCCC
Q 003279 10 KMLDVYIYDYLLKRKLHASAKAFQTEGKVSTD 41 (834)
Q Consensus 10 ~~L~~yiy~yl~k~~~~~~A~~~~~e~~~~~~ 41 (834)
+-||.-|++||..+|+.+++.+|.+|.+++.+
T Consensus 11 eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~ 42 (88)
T 1uuj_A 11 DELNRAIADYLRSNGYEEAYSVFKKEAELDMN 42 (88)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC
Confidence 35799999999999999999999999988854
|
| >1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=85.29 E-value=41 Score=35.55 Aligned_cols=190 Identities=13% Similarity=0.114 Sum_probs=104.5
Q ss_pred CCCCEEEEEeCCCeEEEEecCCC---CceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC---CC------Cc
Q 003279 604 PSLSRLATSSADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI---NN------GS 671 (834)
Q Consensus 604 pdg~~Latgs~Dg~I~IWDl~s~---~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl---~s------~~ 671 (834)
|+..++++.+.+|.|+--.+..- ......+. ..+.+..+........++ ..+..|.++-+.. .. |.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~t~d~ll-~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLL-LFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEE-EEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEECCCCEEE-EEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 56678899999999998765421 11011222 234454544444444455 4455777665544 22 22
Q ss_pred eee---EeecCCCeeEEEEecC---CCEEEEEEcCCeEEEEECC--------CCeEEEEEeCCCCCEEEEEEcC-CCCEE
Q 003279 672 CAG---VFKCQSGATQMRFQPR---LGRILAAAIENYISILDVE--------TQVCRLKLQGHKNQVHSVCWNT-SGEYL 736 (834)
Q Consensus 672 ~i~---~~~~~~~i~~l~~sp~---g~~ll~~s~dg~I~iwDl~--------t~~~~~~l~~h~~~I~sl~~sp-dg~~L 736 (834)
.+. .+.....|..+...++ +.+++.++..|.++...+. .+.....+... +.+..+.... +..++
T Consensus 81 ~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELF 159 (323)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEE
T ss_pred ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEE
Confidence 111 1223345665544332 5689999999999998774 23333334433 4555554444 44455
Q ss_pred EEEeCCeEEEEEcCCCC----CceeEEEeec-CCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCC
Q 003279 737 ASVSDELVRVWSIGSGS----KGECIHELSC-TGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTE 796 (834)
Q Consensus 737 asgsDg~I~IwDl~s~~----~~~~i~~~~~-~~~~I~svafspdg~-~L~sgs~dg~I~Iwdl~~ 796 (834)
+.+.+|.+..++...-. ...-+..+.. ....|.++...+++. .|++.+..|..+..++..
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 55559988888775321 1111111211 234566665544455 789999999888777644
|
| >2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A | Back alignment and structure |
|---|
Probab=85.29 E-value=0.6 Score=39.71 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhcCCCCCC
Q 003279 11 MLDVYIYDYLLKRKLHASAKAFQTEGKVSTDP 42 (834)
Q Consensus 11 ~L~~yiy~yl~k~~~~~~A~~~~~e~~~~~~~ 42 (834)
-+|-.||-||..+|+..+|-+|.+|.+++..+
T Consensus 7 evN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~ 38 (90)
T 2xtc_A 7 EVNFLVYRYLQESGFSHSAFTFGIESHISQSN 38 (90)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCCccc
Confidence 48999999999999999999999999888653
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.57 E-value=62 Score=34.81 Aligned_cols=234 Identities=10% Similarity=0.047 Sum_probs=121.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCC-----------CeEEEEecc-CCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTES-----------FTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t-----------~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
|..|+.. ....+.-..||.|+.|-... ......+.. ....+..++.+......+.-..||.|+.|-
T Consensus 55 i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG 132 (389)
T 3kci_A 55 PVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWG 132 (389)
T ss_dssp EEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEE
T ss_pred eEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEe
Confidence 4445433 33455556788888884321 111122222 223455667776667777778899999996
Q ss_pred cCCCC----------ceeeeecc-CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC-c--------e--eeEeec--
Q 003279 623 TENPD----------YSLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-S--------C--AGVFKC-- 678 (834)
Q Consensus 623 l~s~~----------~~i~~~~~-h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~-~--------~--i~~~~~-- 678 (834)
..... .....+.. ....|..|+.-. ...+.-..+|.|+.|-.... + . ...+..
T Consensus 133 ~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~ 209 (389)
T 3kci_A 133 EAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGG---AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ 209 (389)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECS---SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT
T ss_pred CCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCc---CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC
Confidence 54211 00111111 123566666542 23344566999999975431 0 0 011111
Q ss_pred CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-----------eEEEEEeC-CCCCEEEEEEcCCCCEEEEEeCCeEEE
Q 003279 679 QSGATQMRFQPRLGRILAAAIENYISILDVETQ-----------VCRLKLQG-HKNQVHSVCWNTSGEYLASVSDELVRV 746 (834)
Q Consensus 679 ~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~-----------~~~~~l~~-h~~~I~sl~~spdg~~LasgsDg~I~I 746 (834)
...+..++......+.++...+|.|+.|-.... .....+.. ....|..|+.... ..++...|+.|+.
T Consensus 210 ~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~-hs~alt~~G~v~~ 288 (389)
T 3kci_A 210 GHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ-FSVALTKSGAVYT 288 (389)
T ss_dssp TSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT-EEEEEETTSCEEE
T ss_pred CCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC-EEEEEeCCCeEEE
Confidence 234555555443467778888999999964321 11122221 1224666655322 2334444889999
Q ss_pred EEcCCCC------C--ceeEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003279 747 WSIGSGS------K--GECIHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 747 wDl~s~~------~--~~~i~~~~-~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~ 796 (834)
|-..... . ......+. .....|..++.- ..+.++...++.|+.|-...
T Consensus 289 wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 289 WGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEEECCT
T ss_pred EeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEeeCCC
Confidence 9764311 0 00111111 122345555443 34566678889999997643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 834 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-32 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-19 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 9e-19 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-30 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-28 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-19 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-19 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-16 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 0.001 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-27 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-15 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-15 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 9e-15 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-13 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 9e-22 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-15 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-08 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 0.001 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-21 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-17 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-20 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-16 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-13 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-09 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 6e-20 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-08 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 7e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-18 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-18 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-17 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-17 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.003 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-17 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-10 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-15 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-15 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-09 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.002 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-14 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-13 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-10 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-12 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-11 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-12 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.004 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 2e-10 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 1e-08 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-08 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 5e-07 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 5e-07 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.001 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.003 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 7e-06 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-05 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 2e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.001 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.002 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 9e-04 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 0.004 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 126 bits (315), Expect = 4e-32
Identities = 50/286 (17%), Positives = 105/286 (36%), Gaps = 5/286 (1%)
Query: 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 611
+K+ + H+ D +LL + D K ++W + + + + W+ ++PS + +A
Sbjct: 55 LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVAC 114
Query: 612 SSADRTVRVWDTENPDYS---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 668
D +++ + + + R GH+ + F + + S D + +
Sbjct: 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT-TCALWDIET 173
Query: 669 NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 728
+ P ++ A + + DV +CR GH++ ++++C
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Query: 729 WNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET 788
+ +G A+ SD+ + + S F + LL
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293
Query: 789 LELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833
+W+ + L+ HD VS L + VA+ S D +KIW
Sbjct: 294 CNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 87.5 bits (215), Expect = 4e-19
Identities = 40/196 (20%), Positives = 64/196 (32%), Gaps = 44/196 (22%)
Query: 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 614
V S +PD +L +G D A LW + T H I + F P+ + AT S
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 615 DRTVRV-WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 673
D T R+ + + + + S+ F S LL + ++ W A
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKS-GRLLLAGYDDFNCNVWDALKADRA 305
Query: 674 GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG 733
GV L GH N+V + G
Sbjct: 306 GV-----------------------------------------LAGHDNRVSCLGVTDDG 324
Query: 734 EYLASVS-DELVRVWS 748
+A+ S D +++W+
Sbjct: 325 MAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 86.3 bits (212), Expect = 9e-19
Identities = 29/128 (22%), Positives = 40/128 (31%), Gaps = 4/128 (3%)
Query: 541 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--IT 598
Q S + + F P+G ATG D L+ + T IT
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274
Query: 599 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 658
V FS S L D VWD D GH V L + +
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDD-GMAVATGSW 332
Query: 659 NSEIRYWS 666
+S ++ W+
Sbjct: 333 DSFLKIWN 340
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 121 bits (302), Expect = 1e-30
Identities = 66/306 (21%), Positives = 121/306 (39%), Gaps = 28/306 (9%)
Query: 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 611
S V F P ++ + D +W E+ + TL+ HT + D+ F S LA+
Sbjct: 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 76
Query: 612 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 671
SAD T+++WD + + D + S + I+ W + G
Sbjct: 77 CSADMTIKLWDFQGFECIRTMHGHDHNVSS--VSIMPNGDHIVSASRDKTIKMWEVQTGY 134
Query: 672 CAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWN 730
C F +M + G ++A+ + + + V T+ C+ +L+ H++ V + W
Sbjct: 135 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA 194
Query: 731 TSGEYLASV---------------------SDELVRVWSIGSGSKGECIHELSCTGNKFH 769
Y + D+ +++W + S G C+ L N
Sbjct: 195 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV---STGMCLMTLVGHDNWVR 251
Query: 770 SCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDK 828
+FH +L +TL +W+ + + TL+AH+ V+SL V + S D+
Sbjct: 252 GVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 311
Query: 829 CVKIWK 834
VK+W+
Sbjct: 312 TVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 114 bits (284), Expect = 3e-28
Identities = 62/270 (22%), Positives = 108/270 (40%), Gaps = 26/270 (9%)
Query: 587 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 646
K L H +T V F P S + ++S D T++VWD E D+ RT GH+ +V + F
Sbjct: 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-ERTLKGHTDSVQDISFD 68
Query: 647 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL 706
S + L + + + + + + P I++A+ + I +
Sbjct: 69 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128
Query: 707 DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 765
+V+T C GH+ V V N G +AS S D+ VRVW + + EC EL
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT---KECKAELREHR 185
Query: 766 NKFHSCVFHPTFPSLLVIGCY--------------------ETLELWNMTENKTL-TLSA 804
+ + P + +T+++W+++ L TL
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 245
Query: 805 HDKLVSSLAASTVNGMVASASHDKCVKIWK 834
HD V + + + S + DK +++W
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWD 275
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 87.5 bits (215), Expect = 3e-19
Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 2/126 (1%)
Query: 540 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD 599
+ + + E+ G L +G DK +W + TL H W+
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG 252
Query: 600 VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 659
V F + + + D+T+RVWD +N ++T H V SLDFH + + + +
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHKT-APYVVTGSVD 310
Query: 660 SEIRYW 665
++ W
Sbjct: 311 QTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 86.3 bits (212), Expect = 6e-19
Identities = 38/209 (18%), Positives = 76/209 (36%), Gaps = 26/209 (12%)
Query: 541 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 600
T + V + DG L+A+ +D+ +W + K+ L EH + +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 601 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 660
++P S + S A + + + L S +
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPF------------------------LLSGSRDK 227
Query: 661 EIRYWSINNGSCAGVFKCQSGA-TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 719
I+ W ++ G C + F IL+ A + + + D + + C L
Sbjct: 228 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 287
Query: 720 HKNQVHSVCWNTSGEYLASVS-DELVRVW 747
H++ V S+ ++ + Y+ + S D+ V+VW
Sbjct: 288 HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 77.1 bits (188), Expect = 8e-16
Identities = 20/82 (24%), Positives = 35/82 (42%)
Query: 541 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 600
T + + V F GK + + DK +W ++ TL H ++T +
Sbjct: 236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 295
Query: 601 RFSPSLSRLATSSADRTVRVWD 622
F + + T S D+TV+VW+
Sbjct: 296 DFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.7 bits (91), Expect = 0.001
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 790 ELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833
+ W + LS H V+ + V ++ SAS D +K+W
Sbjct: 1 KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW 44
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 111 bits (278), Expect = 5e-27
Identities = 75/326 (23%), Positives = 123/326 (37%), Gaps = 46/326 (14%)
Query: 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------------------H 593
TS V FS DG+ LATG +K ++ ++ + L +
Sbjct: 62 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120
Query: 594 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 653
+I V FSP LAT + DR +R+WD EN + + D L
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI--VMILQGHEQDIYSLDYFPSGDKL 178
Query: 654 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQV 712
S + +R W + G C+ + G T + P G+ +AA ++ + + D ET
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238
Query: 713 CRLKLQ-------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK---------G 755
+L GHK+ V+SV + G+ + S S D V++W++ + + G
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298
Query: 756 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM-TENKTLTLSAHDKLVSSLAA 814
C + S +L + W+ + N L L H V S+A
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV 358
Query: 815 STV------NGMVASASHDKCVKIWK 834
+ + A+ S D +IWK
Sbjct: 359 ANGSSLGPEYNVFATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 77.5 bits (189), Expect = 1e-15
Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 18/142 (12%)
Query: 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS------------TL 590
+E + V S F+ DG+ + +G D+ LW ++ KS T
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304
Query: 591 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-- 648
H ++ V + + + + S DR V WD ++ + L GH +V+S+
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN-PLLMLQGHRNSVISVAVANGSS 363
Query: 649 ---KEDLLCSCDNNSEIRYWSI 667
+ ++ + + + R W
Sbjct: 364 LGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.8 bits (187), Expect = 2e-15
Identities = 51/277 (18%), Positives = 100/277 (36%), Gaps = 36/277 (12%)
Query: 592 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP-----------------DYSLRTFT 634
+HT + V+FS LAT ++T +V+ + + + +
Sbjct: 60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118
Query: 635 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 694
+ S+ F P + L ++ + N + + + + P ++
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178
Query: 695 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 753
++ + + + I D+ T C L L G+Y+A+ S D VRVW +G
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238
Query: 754 KGECIHELSCTG----NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--------- 800
E + + +G + +S VF S++ +++LWN+
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298
Query: 801 ----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833
T H V S+A + + + S S D+ V W
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 335
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.8 bits (182), Expect = 9e-15
Identities = 38/206 (18%), Positives = 68/206 (33%), Gaps = 45/206 (21%)
Query: 558 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLA 610
DGK +A G D+ +W +E+ + L+ H + V F+ +
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270
Query: 611 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 670
+ S DR+V++W+ +N + + T +S T
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG------------------------ 306
Query: 671 SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 730
+ + IL+ + + + D ++ L LQGH+N V SV
Sbjct: 307 -------HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA 359
Query: 731 TS------GEYLASVS-DELVRVWSI 749
A+ S D R+W
Sbjct: 360 NGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.8 bits (169), Expect = 4e-13
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV------RFSPS 605
V S + + + + +G D+ + W +S L+ H + V P
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367
Query: 606 LSRLATSSADRTVRVWDTE 624
+ AT S D R+W +
Sbjct: 368 YNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.3 bits (139), Expect = 2e-09
Identities = 39/280 (13%), Positives = 75/280 (26%), Gaps = 39/280 (13%)
Query: 588 STLEEHTQWITDVRFSPSLSR---LATSSADRTVRVWDTENP---DYSLRTFTGHSTTVM 641
+ H++ I + +++ P D L H++ V
Sbjct: 7 NQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVC 66
Query: 642 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA------------------- 682
+ F E L C+ + + +++GS S A
Sbjct: 67 CVKFSNDGEYLATGCNKT--TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYI 124
Query: 683 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE 742
+ F P G+ LA E+ + + + + Q
Sbjct: 125 RSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 183
Query: 743 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---------ETLELWN 793
V + + G + P + G ET L
Sbjct: 184 DRTVRIWDLRTGQCSLTLSIEDG--VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE 241
Query: 794 MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833
+++ + + H V S+ + V S S D+ VK+W
Sbjct: 242 RLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 95.3 bits (235), Expect = 9e-22
Identities = 58/285 (20%), Positives = 106/285 (37%), Gaps = 18/285 (6%)
Query: 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 611
V +C G + +G D +W + TL HT + + ++ +
Sbjct: 16 DDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGS 74
Query: 612 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 671
+ V +T ++L T + + S ++ +R W I G
Sbjct: 75 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV------VSGSRDATLRVWDIETGQ 128
Query: 672 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 731
C V A + R+++ A + + + D ET+ C LQGH N+V+S+ ++
Sbjct: 129 CLHVLMGHVAAVRCVQYDG-RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD- 186
Query: 732 SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 790
G ++ S S D +RVW + G CIH L+ + L+ T++
Sbjct: 187 -GIHVVSGSLDTSIRVWDV---ETGNCIHTLTGHQSLTSGMELKDNI--LVSGNADSTVK 240
Query: 791 LWNMTENKTLTLSAHDKLVSS--LAASTVNGMVASASHDKCVKIW 833
+W++ + L S V ++S D VK+W
Sbjct: 241 IWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.9 bits (182), Expect = 5e-15
Identities = 39/202 (19%), Positives = 80/202 (39%), Gaps = 18/202 (8%)
Query: 558 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 617
DG+ + +G +D +W E+ T TL+ HT + ++F + + S D +
Sbjct: 141 RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDTS 198
Query: 618 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 677
+RVWD E + + T TGH + ++ ++L S + +S ++ W I G C +
Sbjct: 199 IRVWDVETGN-CIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQ 254
Query: 678 CQSGAT--QMRFQPRLGRILAAAIENYISILDVETQVC-----RLKLQGHKNQVHSVCWN 730
+ Q ++ ++ + + + D++T L+ G V + +
Sbjct: 255 GPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS 314
Query: 731 TSGEYLASVSDE-----LVRVW 747
+ A S + V
Sbjct: 315 NTKLVCAVGSRNGTEETKLLVL 336
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (127), Expect = 4e-08
Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 14/123 (11%)
Query: 557 SCHFSPDGKLLATGGHDKKAVLW---CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS 613
+ +L +G D +W + +H +T ++F+ + TSS
Sbjct: 220 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV--ITSS 277
Query: 614 ADRTVRVWDTENPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSE---IRYW 665
D TV++WD + + +R G V + +K N +E +
Sbjct: 278 DDGTVKLWDLKTGE-FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336
Query: 666 SIN 668
+
Sbjct: 337 DFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (91), Expect = 0.001
Identities = 26/202 (12%), Positives = 49/202 (24%), Gaps = 33/202 (16%)
Query: 665 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV 724
W V K Q RI++ + +N + + T C L GH V
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60
Query: 725 HSVCWNTSGEYL-------------------------ASVSDELVRVWSIGSGSKGECIH 759
S + ++V + + SGS+ +
Sbjct: 61 WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLR 120
Query: 760 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG 819
+ + V + + + + +L T
Sbjct: 121 VWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 180
Query: 820 M--------VASASHDKCVKIW 833
V S S D +++W
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVW 202
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 94.5 bits (233), Expect = 2e-21
Identities = 42/288 (14%), Positives = 87/288 (30%), Gaps = 9/288 (3%)
Query: 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSL 606
V + S + + TGG +W KS + + +I + P
Sbjct: 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109
Query: 607 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 666
L T+ +WD P ++ S + SC ++ I W
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169
Query: 667 INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS 726
++N + F+ + G L + + +L+ +Q+ S
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFS 229
Query: 727 VCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 786
+ + +GE+ ++ + ++L + S F + G
Sbjct: 230 LGYCPTGEW---LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD 286
Query: 787 ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834
L W ++ S V S S + + + S DK +++
Sbjct: 287 NLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.4 bits (199), Expect = 4e-17
Identities = 46/295 (15%), Positives = 84/295 (28%), Gaps = 9/295 (3%)
Query: 545 FQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 603
FQ S S H + DG++ D +TL H + + V S
Sbjct: 3 FQGAMGSK-PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTIS 60
Query: 604 PSLSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 659
+ T V+VWD +P S + S P L+ + +
Sbjct: 61 NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119
Query: 660 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 719
+ + S + + + +I + L Q
Sbjct: 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179
Query: 720 HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 779
+ + C + S + + L +G + + T S + PT
Sbjct: 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ-IFSLGYCPTGEW 238
Query: 780 LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834
L V +E+ ++ + L H+ V SL + S D + W+
Sbjct: 239 LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 91.5 bits (225), Expect = 2e-20
Identities = 38/306 (12%), Positives = 81/306 (26%), Gaps = 31/306 (10%)
Query: 555 VESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATS 612
+ ++ D +A ++ + ++ + L+EH +T V ++P +R+ T
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 613 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS- 671
DR VW + + E + I +
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129
Query: 672 ----CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET----------------- 710
+S + + P + A + + I
Sbjct: 130 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 189
Query: 711 -QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKF 768
+ VH VC++ +G +A VS + V + + +
Sbjct: 190 FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA----DKKMAVATLASETLP 245
Query: 769 HSCVFHPTFPSLLVIGCYETLELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHD 827
V T SL+ G L+ + L+ + + + + D
Sbjct: 246 LLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD 305
Query: 828 KCVKIW 833
K
Sbjct: 306 KKASSE 311
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 79.1 bits (193), Expect = 3e-16
Identities = 39/265 (14%), Positives = 91/265 (34%), Gaps = 25/265 (9%)
Query: 593 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKED 651
+ I+ ++ +++A + V +++ + + H+ V +D+ P +
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSN 64
Query: 652 LLCSCDNNSEIRYWSINNGSCAGVF---KCQSGATQMRFQPRLGRILAAAIENYISILDV 708
+ +C + W++ + + A +R+ P + + ISI
Sbjct: 65 RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124
Query: 709 ET----QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGS---------- 753
E VC+ + ++ V S+ W+ + LA+ S + R++S
Sbjct: 125 EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184
Query: 754 -----KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKL 808
GE + E S + H F + + T+ L + + + A + L
Sbjct: 185 GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL 244
Query: 809 VSSLAASTVNGMVASASHDKCVKIW 833
+ +A HD ++
Sbjct: 245 PLLAVTFITESSLVAAGHDCFPVLF 269
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 71.0 bits (172), Expect = 1e-13
Identities = 38/320 (11%), Positives = 89/320 (27%), Gaps = 30/320 (9%)
Query: 541 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWIT 598
+ + + +V ++PD + T G D+ A +W + T K + +
Sbjct: 40 KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 99
Query: 599 DVRFSPSLSRLATSSADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 656
VR++P+ + A S R + + EN + + + + LL +
Sbjct: 100 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159
Query: 657 DNNSEIRYWSINNGSCAGVFK-------------------CQSGATQMRFQPRLGRILAA 697
+ + R +S + F R+
Sbjct: 160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 219
Query: 698 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGEC 757
+ ++ + + D + ++ L + +V + T +A+ D +++ S +
Sbjct: 220 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAA---G 276
Query: 758 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS-- 815
+ + S H VS ++
Sbjct: 277 KLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSG 336
Query: 816 --TVNGMVASASHDKCVKIW 833
+ D + IW
Sbjct: 337 GKAKCSQFCTTGMDGGMSIW 356
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 56.8 bits (135), Expect = 5e-09
Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 6/117 (5%)
Query: 558 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 617
F + L+A GHD VL+ +S K + +R + D+
Sbjct: 249 VTFITESSLVAA-GHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307
Query: 618 VRVWDTENPDYSLRTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINNGS 671
+ L + H +V + +K C+ + + W + +
Sbjct: 308 ASSEGSAAAGAGL--DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.8 bits (104), Expect = 3e-05
Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 5/86 (5%)
Query: 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP----SLS 607
+ DKKA + + H ++ + S
Sbjct: 284 LDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG-AGLDSLHKNSVSQISVLSGGKAKCS 342
Query: 608 RLATSSADRTVRVWDTENPDYSLRTF 633
+ T+ D + +WD + + +L+
Sbjct: 343 QFCTTGMDGGMSIWDVRSLESALKDL 368
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.5 bits (103), Expect = 3e-05
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Query: 718 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 776
+ WN +A + V ++ SG+K +HEL + + P
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEK-SGNKWVQVHELKEHNGQVTGVDWAPD 62
Query: 777 FPSLLVIGCYETLELWNM 794
++ G +W +
Sbjct: 63 SNRIVTCGTDRNAYVWTL 80
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.1 bits (219), Expect = 6e-20
Identities = 45/288 (15%), Positives = 88/288 (30%), Gaps = 30/288 (10%)
Query: 560 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 619
D + + +G D +W + K L HT + +++ + +
Sbjct: 21 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV------IITGSSD 74
Query: 620 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-- 677
+ ++ ++ +C + I W + + + + +
Sbjct: 75 STVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVL 134
Query: 678 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 737
A I++A+ + I + + T L GHK + C +
Sbjct: 135 VGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA--CLQYRDRLVV 192
Query: 738 S-VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMT 795
S SD +R+W I EC L +V G Y+ +++W++
Sbjct: 193 SGSSDNTIRLWDI------ECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLV 246
Query: 796 ENKTL----------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833
TL H V L + S+SHD + IW
Sbjct: 247 AALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.9 bits (130), Expect = 1e-08
Identities = 31/247 (12%), Positives = 70/247 (28%), Gaps = 51/247 (20%)
Query: 588 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 647
E ++ + +++ ++ + D T+++WD + R TGH+ +V+ L +
Sbjct: 9 HCRSETSKGVYCLQYDDQ--KIVSGLRDNTIKIWDKNTLE-CKRILTGHTGSVLCLQYDE 65
Query: 648 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD 707
S + + + + +I + +
Sbjct: 66 RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW-DMAS 124
Query: 708 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNK 767
R L GH+ V+ V ++ AS D ++VW+ + E + L+
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKYIVSAS-GDRTIKVWNTSTC---EFVRTLNGHKRG 180
Query: 768 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 827
+ +V S S D
Sbjct: 181 IACLQYRDR-------------------------------------------LVVSGSSD 197
Query: 828 KCVKIWK 834
+++W
Sbjct: 198 NTIRLWD 204
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.5 bits (116), Expect = 7e-07
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 558 CHFSPDGKLLATGGHDKKAVLWCTESFTVKS---------TLEEHTQWITDVRFSPSLSR 608
D K + +G +D K +W + TL EH+ + ++F +
Sbjct: 222 RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--Q 279
Query: 609 LATSSADRTVRVWD 622
+ +SS D T+ +WD
Sbjct: 280 IVSSSHDDTILIWD 293
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 84.9 bits (208), Expect = 3e-18
Identities = 36/299 (12%), Positives = 88/299 (29%), Gaps = 19/299 (6%)
Query: 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 611
+ V +C + + TG DK ++ + + L H + ++++ L +
Sbjct: 12 MTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVS 69
Query: 612 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 671
S DRTVRVWD + + +ST + + ++ + W + S
Sbjct: 70 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129
Query: 672 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 731
+ + P + +++ + + + + G + V
Sbjct: 130 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVA 189
Query: 732 SGEYLASVSDELVRVWSIGSGSKGECI-----------------HELSCTGNKFHSCVFH 774
+ L +S R++S + + +
Sbjct: 190 QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL 249
Query: 775 PTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833
LV + + + S H +S++ V+ + + + I+
Sbjct: 250 RLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIY 308
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.4 bits (126), Expect = 5e-08
Identities = 29/193 (15%), Positives = 59/193 (30%), Gaps = 6/193 (3%)
Query: 558 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 617
S G ++ +G +D ++W L HT I + R ++S D T
Sbjct: 165 RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 224
Query: 618 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 677
+R+WD EN + + + N
Sbjct: 225 IRIWDLENGELMYTLQGHTALVGLLRLSDKF-----LVSAAADGSIRGWDANDYSRKFSY 279
Query: 678 CQSGATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGEYL 736
+ + + IL + EN +I ++ + ++ + +Q+ SV +
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVA 339
Query: 737 ASVSDELVRVWSI 749
A D + +
Sbjct: 340 AVEKDGQSFLEIL 352
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.4 bits (126), Expect = 5e-08
Identities = 6/90 (6%), Positives = 24/90 (26%)
Query: 579 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 638
++ H ++ + + S ++ +++ + +
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD 325
Query: 639 TVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 668
+ S++F D S + +
Sbjct: 326 QIWSVNFKGKTLVAAVEKDGQSFLEILDFS 355
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.6 bits (124), Expect = 8e-08
Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSS 613
F +L +G + + ++ S V + + + I V F + +A
Sbjct: 285 SAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVE 342
Query: 614 ADRTVRVWD 622
D +
Sbjct: 343 KDGQSFLEI 351
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.4 bits (108), Expect = 8e-06
Identities = 21/126 (16%), Positives = 42/126 (33%), Gaps = 11/126 (8%)
Query: 714 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 772
R L+GH V + C Y+ + + D+++RV+ + + +LS +
Sbjct: 5 RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDS---INKKFLLQLSGHDGGVWALK 60
Query: 773 FHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV----ASASHDK 828
+ +LV G + + T + V + S D
Sbjct: 61 YAHG--GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118
Query: 829 CVKIWK 834
+ +WK
Sbjct: 119 TLHVWK 124
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.3 bits (100), Expect = 8e-05
Identities = 35/273 (12%), Positives = 73/273 (26%), Gaps = 49/273 (17%)
Query: 562 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRV 620
P + G + L + + VR + + S D T+ V
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185
Query: 621 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 680
WD +GH+ + S + ++ + + + + IR W + NG + +
Sbjct: 186 WDVAQMKCL-YILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLENGELMYTLQGHT 243
Query: 681 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 740
+ + AAA + + H N + S L S S
Sbjct: 244 ALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFS--YHHTNLSAITTFYVSDNILVSGS 301
Query: 741 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 800
+ ++++ S G+ +H
Sbjct: 302 ENQFNIYNLRS---GKLVHA---------------------------------------- 318
Query: 801 TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833
+ + S+ +VA+ D +
Sbjct: 319 NILKDADQIWSVNFKG-KTLVAAVEKDGQSFLE 350
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 84.2 bits (206), Expect = 3e-18
Identities = 37/312 (11%), Positives = 86/312 (27%), Gaps = 26/312 (8%)
Query: 549 PAST-SKVESCHFSPDGKLLATGGHDKKAV----LWCTESFTVKSTLEEHTQWITDVRFS 603
P++ + + P +A V ++ V + +T V+FS
Sbjct: 13 PSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFS 72
Query: 604 PSLS--RLATSSADRTVRVWDTENPDYS-------LRTFTGHSTTVMSLDFHP-SKEDLL 653
P L + V VW S F + + + + + +
Sbjct: 73 PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 132
Query: 654 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 713
++ + S ++G+ G S + + + + + S++ +
Sbjct: 133 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF 192
Query: 714 RLKLQ-----GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF 768
+ + V V ++ ++ S +
Sbjct: 193 KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQ 252
Query: 769 HSCVFHPTFPSLLVIGCYE--TLELWNMTENK---TLTLSAHDKLVSSLA-ASTVNGMVA 822
S T+ +W++T +K TL + +T NG +
Sbjct: 253 GGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII 312
Query: 823 SASHDKCVKIWK 834
S S D + ++
Sbjct: 313 SLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.3 bits (118), Expect = 5e-07
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 607 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--MSLDFHPSKEDLLCSCDNNSEIRY 664
+ AT AD T+RVWD ++ +T + + + + S + + +
Sbjct: 264 QKFATVGADATIRVWDVTTSK-CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322
Query: 665 WSI 667
+ +
Sbjct: 323 YEL 325
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 82.0 bits (200), Expect = 2e-17
Identities = 36/286 (12%), Positives = 82/286 (28%), Gaps = 6/286 (2%)
Query: 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLA 610
+ + S DGK L + + W + + H IT ++ + L
Sbjct: 12 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLF 70
Query: 611 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 670
T S D ++V + + L S + + I +S
Sbjct: 71 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130
Query: 671 SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 730
+ + S + + + + + + + + + N
Sbjct: 131 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN 190
Query: 731 TSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 790
+ S + V +S+ + + + + K + P L ++
Sbjct: 191 GAFLVATDQSRK-VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 249
Query: 791 LWNM---TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833
+WNM +++ + AH + + SA D +K W
Sbjct: 250 VWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.1 bits (112), Expect = 2e-06
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 558 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSAD 615
+SPD LATG D ++W + + H + + + + ++ D
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQD 289
Query: 616 RTVRVWD 622
++ W+
Sbjct: 290 SNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.3 bits (97), Expect = 2e-04
Identities = 10/132 (7%), Positives = 33/132 (25%), Gaps = 3/132 (2%)
Query: 621 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 680
+ T+V + S + +
Sbjct: 166 SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA 225
Query: 681 GATQMRFQPRLGRILAAAIENYISILDVET--QVCRLKLQGHKNQVHSVCWNTSGEYLAS 738
+ + P R+ +++N + + ++ + H + + + S
Sbjct: 226 KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVS 285
Query: 739 VS-DELVRVWSI 749
D ++ W++
Sbjct: 286 AGQDSNIKFWNV 297
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 82.2 bits (201), Expect = 2e-17
Identities = 34/317 (10%), Positives = 73/317 (23%), Gaps = 27/317 (8%)
Query: 545 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVR 601
Q+ A + P LL D ++ + L + +
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63
Query: 602 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 661
F + + + S + T + + +D L + +
Sbjct: 64 FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123
Query: 662 IRYWSINNGSCAGVFKCQSGATQMRFQPRL-------GRILAAAIENYISILDVETQVCR 714
I N + + + + ++ R++ + + +
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183
Query: 715 LKLQGHKN----QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------------GEC 757
E A S D V V
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243
Query: 758 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV 817
+ + +S F P L G + WN+ K + A S + +
Sbjct: 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACS 303
Query: 818 NGMVASASHDKCVKIWK 834
+ ++ A+ D K
Sbjct: 304 DNILCLATSDDTFKTNA 320
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.2 bits (118), Expect = 5e-07
Identities = 13/126 (10%), Positives = 36/126 (28%), Gaps = 17/126 (13%)
Query: 558 CHFSPDGKLLATGGHDKKAVLWCTES---------------FTVKSTLEEHTQWITDVRF 602
+ + A D + + + + + + F
Sbjct: 200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259
Query: 603 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 662
SP L T+ +D + W+ + ++ F + + S L + +++
Sbjct: 260 SPRHKFLYTAGSDGIISCWNLQTRK-KIKNFAKFNEDS-VVKIACSDNILCLATSDDTFK 317
Query: 663 RYWSIN 668
+I+
Sbjct: 318 TNAAID 323
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.003
Identities = 18/155 (11%), Positives = 42/155 (27%), Gaps = 20/155 (12%)
Query: 614 ADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 671
+ V+ + D +G + + P +++ + + ++
Sbjct: 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227
Query: 672 CAGVFKCQSGATQMR----------------FQPRLGRILAAAIENYISILDVETQVCRL 715
+ R F PR + A + IS +++T+
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287
Query: 716 KLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVWSI 749
N+ V S L SD+ + +
Sbjct: 288 NFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAA 321
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 80.7 bits (197), Expect = 5e-17
Identities = 39/301 (12%), Positives = 87/301 (28%), Gaps = 13/301 (4%)
Query: 545 FQLIPASTS-KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 603
F +P + +P G + + S T EH+ T + S
Sbjct: 9 FPSLPRTARGTAVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTS 67
Query: 604 PSLSRLATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 662
PS A+ VR+WDT + L+T S V + + + + +
Sbjct: 68 PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 127
Query: 663 RYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 722
+ + + + + R + + + +
Sbjct: 128 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE 187
Query: 723 QVHSVCWN----TSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 778
V + ++ D + +++ G+K + S VF T+
Sbjct: 188 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 247
Query: 779 ---SLLVIGCYE-TLELWNMTENKTL-TLSAHDKL-VSSLAASTVNGMVASASHDKCVKI 832
+ + + T+++WN+ K T+ ++ L + S S + +
Sbjct: 248 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307
Query: 833 W 833
Sbjct: 308 V 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 59.9 bits (143), Expect = 3e-10
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 558 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSADR 616
+SPDG +A+ DK +W + V+ T+ T+ + + L + SA+
Sbjct: 244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303
Query: 617 TVRVWDTE 624
+ + E
Sbjct: 304 FINFVNPE 311
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 75.9 bits (185), Expect = 2e-15
Identities = 23/318 (7%), Positives = 69/318 (21%), Gaps = 47/318 (14%)
Query: 560 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRL-ATSSADRT 617
+ + + + S TV + +P ++
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 618 VRVWDTENPDYS-----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----------E 661
+ D + + ++ S P +++ + +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123
Query: 662 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK 721
+ +S +G A + Q+ I +DV+T + L
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183
Query: 722 -------------------------NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 755
+ + A+ + G
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL---KTG 240
Query: 756 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS 815
+ + + + + G L +++ + K + + D +A
Sbjct: 241 KTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFD 300
Query: 816 TVNGMVASASHDKCVKIW 833
+ + ++
Sbjct: 301 KKGDKLYLGGTFNDLAVF 318
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 49.7 bits (117), Expect = 7e-07
Identities = 9/73 (12%), Positives = 20/73 (27%), Gaps = 2/73 (2%)
Query: 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 611
T + SP G ++ A + + + V F +L
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAK-YDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYL 308
Query: 612 SSADRTVRVWDTE 624
+ V++ +
Sbjct: 309 GGTFNDLAVFNPD 321
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 43.6 bits (101), Expect = 7e-05
Identities = 15/125 (12%), Positives = 32/125 (25%), Gaps = 5/125 (4%)
Query: 558 CHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADR 616
F D + AT + ++ + T+ SP +
Sbjct: 214 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN- 272
Query: 617 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 676
+ +D + H T + F D L +++ ++ +
Sbjct: 273 RLAKYDLKQRKLIKAANLDH--TYYCVAFDKK-GDKLYLGGTFNDLAVFNPDTLEKVKNI 329
Query: 677 KCQSG 681
K G
Sbjct: 330 KLPGG 334
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 75.0 bits (182), Expect = 3e-15
Identities = 34/289 (11%), Positives = 80/289 (27%), Gaps = 54/289 (18%)
Query: 589 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 648
T+ H + IT + +P L + S D + W + + HS ++SLD +
Sbjct: 8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSS------MHQDHSNLIVSLDNSKA 57
Query: 649 KEDLLCSCDNNSEIRYWSINNGS--------------------------------CAGVF 676
+E S D+ ++ + +
Sbjct: 58 QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV 117
Query: 677 KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL 736
+ S + + + + +V + + + + S Y+
Sbjct: 118 RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYI 177
Query: 737 ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--------- 787
A+ + + + T + +
Sbjct: 178 AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT 237
Query: 788 TLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834
+ ++++ + L+AH V++L T + S+ D C+K W
Sbjct: 238 NIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.1 bits (133), Expect = 4e-09
Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 2/89 (2%)
Query: 579 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 638
+ + + +AT S D + ++ + P ++ H
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259
Query: 639 TVMSLDFHPSKEDLLCSCDNNSEIRYWSI 667
V +L + L S ++ I+ W++
Sbjct: 260 GVNNLLWET--PSTLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.0 bits (104), Expect = 2e-05
Identities = 14/97 (14%), Positives = 37/97 (38%), Gaps = 1/97 (1%)
Query: 654 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 713
+ W+ + + + + +++ I I V+ +
Sbjct: 190 DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK 249
Query: 714 RLK-LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSI 749
+K L HK+ V+++ W T ++S +D ++ W++
Sbjct: 250 IIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.8 bits (88), Expect = 0.002
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 630 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 673
L+T +GH+ + +L +P L S + I WS ++
Sbjct: 6 LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQD 44
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 74.1 bits (180), Expect = 1e-14
Identities = 25/299 (8%), Positives = 63/299 (21%), Gaps = 30/299 (10%)
Query: 560 FSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--R 616
FSP DG L+A + + + ++ +K I VR
Sbjct: 10 FSPLDGDLIAFVSRGQAFIQDVSGTYVLKVP---EPLRIRYVRRGGDTKVAFIHGTREGD 66
Query: 617 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 676
+ ++D F + V ++ + + + + D +
Sbjct: 67 FLGIYDYRTG--KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER 124
Query: 677 KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR---------LKLQGHKNQVHSV 727
++ T I + Q + ++
Sbjct: 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAP 184
Query: 728 CWNTSGEYLASVS-DELVRVWSIGSGS----KGECIHELSCTGNKFHSCVFHPTFPSLLV 782
++ + L +S L + + + P +
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244
Query: 783 IGCYETLELWNMTENKT--------LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833
+ + L + + S A + +
Sbjct: 245 GEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY 303
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 70.3 bits (170), Expect = 2e-13
Identities = 23/305 (7%), Positives = 57/305 (18%), Gaps = 24/305 (7%)
Query: 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 609
++ D K+ G + L + T K+ E +
Sbjct: 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF 99
Query: 610 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC---------SCDNNS 660
A + DR + + + +
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159
Query: 661 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR------ 714
I + + S F + + + D
Sbjct: 160 AIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSK 219
Query: 715 -LKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFH---- 769
+ + + +L ++ S + +
Sbjct: 220 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIY 279
Query: 770 -SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 828
V L +++ K + + ++ L S V D
Sbjct: 280 SVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNN---LTDLRLSADRKTVMVRKDDG 336
Query: 829 CVKIW 833
+ +
Sbjct: 337 KIYTF 341
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 61.8 bits (148), Expect = 1e-10
Identities = 9/87 (10%), Positives = 22/87 (25%), Gaps = 4/87 (4%)
Query: 541 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 600
+ + +S + + + + E +TD+
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK----TRKVTEVKNNLTDL 320
Query: 601 RFSPSLSRLATSSADRTVRVWDTENPD 627
R S + D + + E P+
Sbjct: 321 RLSADRKTVMVRKDDGKIYTFPLEKPE 347
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 42.9 bits (99), Expect = 1e-04
Identities = 19/250 (7%), Positives = 53/250 (21%), Gaps = 19/250 (7%)
Query: 600 VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL-CSCDN 658
FSP L + + D + + + +
Sbjct: 8 EDFSPLDGDLIAFVSRGQAFIQDVSG---TYVLKVPEPLRIRYVRRGGDTKVAFIHGTRE 64
Query: 659 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 718
+ + G + M + A I +D+ET + +
Sbjct: 65 GDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER 124
Query: 719 GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS-------KGECIHELSCTGNKFHSC 771
+ + + + ++A +G I + + ++
Sbjct: 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAP 184
Query: 772 VFHPTFPSLLVIGCYETLELWN--------MTENKTLTLSAHDKLVSSLAASTVNGMVAS 823
F +L + + +K + + + +
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244
Query: 824 ASHDKCVKIW 833
+D
Sbjct: 245 GEYDLNDMYK 254
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.6 bits (163), Expect = 2e-12
Identities = 28/260 (10%), Positives = 69/260 (26%), Gaps = 65/260 (25%)
Query: 585 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-----------YSLRTF 633
+ + H I V S + S D ++VWD + D + ++
Sbjct: 5 ATANAGKAHDADIFSVSACNSF--TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62
Query: 634 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 693
H + +++ + L+ + + ++ ++ I +
Sbjct: 63 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDL---------- 112
Query: 694 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS 753
L K+ ++ W S + L
Sbjct: 113 ---------------------LDSDMKKHSFWALKWGASNDRL----------------- 134
Query: 754 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLA 813
H L T K + ++ + + + + +S+
Sbjct: 135 ---LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD 191
Query: 814 ASTVNGMVASASHDKCVKIW 833
S G++A+ ++ V+I
Sbjct: 192 ISE-RGLIATGFNNGTVQIS 210
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.9 bits (156), Expect = 1e-11
Identities = 34/315 (10%), Positives = 75/315 (23%), Gaps = 45/315 (14%)
Query: 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------HTQWITDVRFSPS 605
+ + S + D +W + ++ ++ H + V +
Sbjct: 14 DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71
Query: 606 LSR-------LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 658
+ R +AT+S + + D + ++ D L +
Sbjct: 72 IERDAFELCLVATTSFSGDLLFYRITRED-ETKKVIFEKLDLLDSDMKKHSFWALKWGAS 130
Query: 659 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 718
N + + G L +E Q
Sbjct: 131 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSL---------TLNWSPTLELQGTVESPM 181
Query: 719 GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFH--------- 769
SV + G ++ V++ + + N +
Sbjct: 182 TPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 241
Query: 770 -----------SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVN 818
+ T +L + + +L AH V SL+ +
Sbjct: 242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 301
Query: 819 GMVASASHDKCVKIW 833
+ SA D ++ W
Sbjct: 302 ETLCSAGWDGKLRFW 316
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.5 bits (124), Expect = 1e-07
Identities = 36/256 (14%), Positives = 75/256 (29%), Gaps = 51/256 (19%)
Query: 553 SKVESCHFSPDG-----KLLATGGHDKKAVLWCTESFTVKS------------------T 589
+ + L +W F +S +
Sbjct: 120 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVES 179
Query: 590 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWD-----TENPDYSLRTFTGHSTTVMSLD 644
+Q+ T V S +AT + TV++ + S + +S ++ S+
Sbjct: 180 PMTPSQFATSVDISER-GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238
Query: 645 FHPSKEDLLCSCDNNSEIRY----------------WSINNGSCAGVFKCQSGATQMRFQ 688
F P L + D+NS + ++ + G F S + F
Sbjct: 239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 298
Query: 689 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV----HSVCWNTSGEYLASVSDELV 744
+ +A + + DV+T+ L H + + + + G+ LA +
Sbjct: 299 DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG--VF 356
Query: 745 RVWSIGSGSKGECIHE 760
V + G + +
Sbjct: 357 DVKFLKKGWRSGMGAD 372
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.9 bits (112), Expect = 3e-06
Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 21/118 (17%)
Query: 552 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI----TDVRFSPSLS 607
+S V S F+ G+ L + G D K W ++ +TL H I +
Sbjct: 289 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD 348
Query: 608 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 665
LA V+D + R+ G E L C C + S IR++
Sbjct: 349 SLAEPG------VFDVKFLKKGWRSGMGADLN----------ESLCCVCLDRS-IRWF 389
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 66.8 bits (161), Expect = 3e-12
Identities = 32/309 (10%), Positives = 72/309 (23%), Gaps = 44/309 (14%)
Query: 565 KLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRL-ATSSADRTVRVW 621
+ K V+ TE V + + +P AT + ++
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 622 DTENP----DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY-----------WS 666
D L T ++ P + L +
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 667 INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG------- 719
S F+ T + + ++ + ++ + T V +Q
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181
Query: 720 --------------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 764
+ + + + +G + E+
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE--MAMREVRIM 239
Query: 765 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA 824
+ S +P G Y LE +++ +N ++ S+ ST V
Sbjct: 240 DVFYFSTAVNP--AKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG 297
Query: 825 SHDKCVKIW 833
+ +
Sbjct: 298 GALGDLAAY 306
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.1 bits (123), Expect = 1e-07
Identities = 16/193 (8%), Positives = 47/193 (24%), Gaps = 26/193 (13%)
Query: 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE---------------------H 593
+ ++ DG L G D + + ++
Sbjct: 137 ITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSG 196
Query: 594 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 653
+ ++ + D E + ++R S +P+K
Sbjct: 197 VMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF 256
Query: 654 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET--Q 711
+ + + + + + + + ++ D ET +
Sbjct: 257 GAYNV---LESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313
Query: 712 VCRLKLQGHKNQV 724
++ L G+ +
Sbjct: 314 KGQVDLPGNASMS 326
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 37.9 bits (86), Expect = 0.004
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Query: 541 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 600
+ +P S S + S DG + GG + E+ K ++ +
Sbjct: 269 KNASIKRVPLPHS-YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327
Query: 601 RFSPSLSR 608
+R
Sbjct: 328 ASVRLFTR 335
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 61.0 bits (147), Expect = 2e-10
Identities = 28/298 (9%), Positives = 75/298 (25%), Gaps = 27/298 (9%)
Query: 560 FSPDGK--LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 617
D + T + L ++ +K+ L+ + R S S L D
Sbjct: 26 NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGK 84
Query: 618 VRVWDTENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 673
V + D + ++ + + S + + +
Sbjct: 85 VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 144
Query: 674 GVFKCQSGATQMRFQPRLGRILAAAI-------------ENYISILDVET-QVCRLKLQG 719
+ + + R+ A I ++D +
Sbjct: 145 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS 204
Query: 720 HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 779
+ +H + S Y + ++ ++ I +K + + TG + F
Sbjct: 205 AERFLHDGGLDGSHRYFITAANARNKLVVI--DTKEGKLVAIEDTGGQTPHPGRGANFVH 262
Query: 780 LLVIGCYETLELWN----MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833
+ T + + + + + + G + +H ++
Sbjct: 263 PTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY 320
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 56.0 bits (134), Expect = 1e-08
Identities = 36/304 (11%), Positives = 71/304 (23%), Gaps = 37/304 (12%)
Query: 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-----EHTQWITDVRFSPSLSRL 609
V S G+ L G D K + + E E T
Sbjct: 64 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYA 123
Query: 610 -ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 668
A + + D E + + + T ++HP + ++
Sbjct: 124 IAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 182
Query: 669 NGSCAGVFKCQSGATQMRFQPRLGR-------------ILAAAIENYISILDVETQVCRL 715
+ + R + AA ++ + +
Sbjct: 183 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV 242
Query: 716 KLQGHKNQVHSVCWNT------SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFH 769
++ Q G A+ V IG+ +G + K
Sbjct: 243 AIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDN-----AWKIL 297
Query: 770 SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 829
SL + + L+ TL+ ++ S+A + + D
Sbjct: 298 DSFPALGGGSLFIKTHPNSQYLYVDA-----TLNPEAEISGSVAVFDIK-AMTGDGSDPE 351
Query: 830 VKIW 833
K
Sbjct: 352 FKTL 355
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 55.6 bits (132), Expect = 1e-08
Identities = 17/117 (14%), Positives = 35/117 (29%), Gaps = 4/117 (3%)
Query: 534 AEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH 593
AE G+ +Q + + + V+ ++ + E
Sbjct: 240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-M 298
Query: 594 TQWITDVRFSPSLSRL--ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 648
I + S L A S+ D+T+ + D E+ + LR+ +
Sbjct: 299 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE-LRSVNQLGHGPQVITTADM 354
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 50.6 bits (119), Expect = 5e-07
Identities = 21/301 (6%), Positives = 68/301 (22%), Gaps = 35/301 (11%)
Query: 551 STSKVESCHFSPDGKLLAT----------GGHDKKAVLWCTESFTVKSTLEEHTQWITDV 600
+ + + DG +A G ++ + + +E V
Sbjct: 45 DGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV 104
Query: 601 RFSPSLSRLATSSADRTVRVWDTE------NPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 654
P + + + +T+ + D + F P+ D
Sbjct: 105 GTYPWM--TSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF 162
Query: 655 SCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 714
+ + + + + + + + + ++ +
Sbjct: 163 MHCRDGSLAKVAFGTEGTPEITHTEVF--HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQ 220
Query: 715 LKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 774
+ L + + G + +++ +
Sbjct: 221 IDLSSGDAKFLPAVEALT-------------EAERADGWRPGGWQQVAYHRALDRIYLLV 267
Query: 775 PTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG--MVASASHDKCVKI 832
+ + + + L + S+ S + A ++ DK + I
Sbjct: 268 DQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYI 327
Query: 833 W 833
Sbjct: 328 H 328
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 49.9 bits (117), Expect = 5e-07
Identities = 25/269 (9%), Positives = 71/269 (26%), Gaps = 8/269 (2%)
Query: 569 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPD 627
+ S V +T+ + SP +++ ++ V + DT +
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65
Query: 628 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRF 687
G S +++ + + +S + + + AG K +
Sbjct: 66 VIATVPAGSSPQGVAVSPDGKQVY--VTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLAL 123
Query: 688 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVW 747
P ++ + + + + G + + + + +
Sbjct: 124 SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSIS 183
Query: 748 SIGSGSKGECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHD 806
I + + + V + T+ + + NK
Sbjct: 184 VIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG 243
Query: 807 KLVSSLAASTVNG--MVASASHDKCVKIW 833
+ +A + +G + + S V +
Sbjct: 244 PDPAGIAVTP-DGKKVYVALSFCNTVSVI 271
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 39.5 bits (90), Expect = 0.001
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 579 WCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTEN 625
T + + + + + +P ++ S TV V DT
Sbjct: 229 IDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 38.3 bits (87), Expect = 0.003
Identities = 25/244 (10%), Positives = 63/244 (25%), Gaps = 6/244 (2%)
Query: 560 FSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 618
SPDG + H + T + V +T+ + T+ A T+
Sbjct: 39 ISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTL 98
Query: 619 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 678
V D ++ + + L P + L + + + + + +
Sbjct: 99 SVID--TTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV 156
Query: 679 QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH-SVCWNTSGEYLA 737
+ P ++ A ++ + + + +
Sbjct: 157 GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYV 216
Query: 738 SVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTE 796
+ D+ S+ + + G P + V + T+ + +
Sbjct: 217 TNVDKYFNTVSMIDTGTNKITARIP-VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275
Query: 797 NKTL 800
N
Sbjct: 276 NTIT 279
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.9 bits (110), Expect = 7e-06
Identities = 34/333 (10%), Positives = 75/333 (22%), Gaps = 54/333 (16%)
Query: 549 PASTSKVESCHFSPDGK-----LLATGGHDKKAVLWCTESFTVKSTLEE----HTQWITD 599
AS + L A + + C
Sbjct: 16 AASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHS 75
Query: 600 VRF----SPSLSRLATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVM----SLDFHPSK 649
S S +R A V V+D P + +V + S
Sbjct: 76 GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS 135
Query: 650 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-------GRILAAAIENY 702
LL +S S+ S + K S + A+ +
Sbjct: 136 ACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAA 195
Query: 703 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS 762
+ + + N G + +V+ + I + +
Sbjct: 196 PAAAGIVGAQ---CTGAQNCSSQAAQANYPGMLVWAVASS-ILQGDIPAAG-ATMKAAID 250
Query: 763 CTGNKFHSCVFHPTFPSLLVIGC-------------------YETLELWNMTENKTLTLS 803
+ + F ++ E + +T
Sbjct: 251 GNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI 310
Query: 804 AHDKLVSSLAASTVNG---MVASASHDKCVKIW 833
++ ++ A+ +G A+++ + + I+
Sbjct: 311 SNGHDSDAIIAAQ-DGASDNYANSAGTEVLDIY 342
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 46.5 bits (109), Expect = 1e-05
Identities = 16/187 (8%), Positives = 34/187 (18%), Gaps = 6/187 (3%)
Query: 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-----EHTQWITDVRFSPSLSRL 609
V S G+ L G D + + + E E +
Sbjct: 64 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYT 123
Query: 610 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSIN 668
+ + + TV + +HP + + + E
Sbjct: 124 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 183
Query: 669 NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 728
G V + + ++
Sbjct: 184 TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA 243
Query: 729 WNTSGEY 735
G+
Sbjct: 244 LVDVGKT 250
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 42.2 bits (98), Expect = 2e-04
Identities = 28/277 (10%), Positives = 73/277 (26%), Gaps = 36/277 (12%)
Query: 537 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW------------CTESF 584
+ E ++ + S S + + G + T
Sbjct: 93 KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 152
Query: 585 TVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSLRTFTGHSTTVMSL 643
TV + + + S + + V + + ++ D T G + +
Sbjct: 153 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADG 212
Query: 644 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMR----FQPRLGRILAAAI 699
+ S + + +N++++ + + + R P+ G + + +
Sbjct: 213 GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH 272
Query: 700 ENYISILDVETQVCRLK---------LQGHKNQVHSVCWNTSGEYLASVS--------DE 742
SI + T LQG + + +L + +
Sbjct: 273 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQ 332
Query: 743 LVRVWSIGSGSKGECI--HELSCTGNKFHSCVFHPTF 777
V V+ + + + + V P +
Sbjct: 333 SVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY 369
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 39.6 bits (91), Expect = 0.001
Identities = 29/231 (12%), Positives = 54/231 (23%), Gaps = 21/231 (9%)
Query: 611 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 670
T + + D ++ ++ V S LL + I +
Sbjct: 37 TLRDAGQIALVDGDS-KKIVKVIDTGY-AVHISRMSASGRYLLVIGRDAR-IDMIDLWAK 93
Query: 671 SCAGV--FKCQSGATQMRFQPRL---GRILAAA--IENYISILDVETQVCRLKLQGHKNQ 723
V K A + R A +I+D ET + +
Sbjct: 94 EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT 153
Query: 724 VHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 783
V + ++ I S E I + TG ++ I
Sbjct: 154 VDTQTYHPEPR----------VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI 203
Query: 784 GCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGM-VASASHDKCVKIW 833
G L + ++A + + + A K
Sbjct: 204 GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG 254
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 39.2 bits (90), Expect = 0.002
Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 22/130 (16%)
Query: 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA---- 610
V S DG + G K ++ + L+ ++ P S L
Sbjct: 267 VWSTSHLGDGSISLIGTDPKN---HPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTT 323
Query: 611 ---TSSADRTVRVWDTEN--------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--- 656
+ ++V V+D +N P + V+ +++ +++ S
Sbjct: 324 FNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG 383
Query: 657 -DNNSEIRYW 665
+++S +
Sbjct: 384 KNDSSALVVV 393
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 40.2 bits (92), Expect = 9e-04
Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 1/67 (1%)
Query: 611 TSSADRTVRVWDT-ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 669
S + + VW+ +L V + P K L + + I
Sbjct: 9 ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68
Query: 670 GSCAGVF 676
A F
Sbjct: 69 DDGALTF 75
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 834 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.98 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.96 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.95 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.94 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.93 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.93 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.92 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.92 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.91 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.9 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.9 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.89 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.88 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.86 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.85 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.85 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.84 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.83 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.82 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.81 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.77 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.74 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.68 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.58 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.55 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.5 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.5 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.36 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.35 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.33 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.23 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.23 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.21 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.12 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.11 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.11 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.06 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.06 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.05 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.95 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.95 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.94 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.9 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.84 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.81 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.69 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.65 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.59 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.42 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.35 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.33 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.21 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.15 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.08 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.04 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.99 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.93 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.8 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.77 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.71 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.68 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.66 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.58 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.57 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.45 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.41 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.36 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.24 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.23 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 97.22 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.2 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 97.11 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.93 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 95.77 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.55 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 95.53 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 95.24 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 95.2 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 94.57 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 94.36 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 93.8 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 93.75 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 93.65 | |
| d1wp5a_ | 323 | Topoisomerase IV subunit A, ParC, C-terminal domai | 91.29 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 90.37 | |
| d1uuja_ | 76 | Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te | 90.14 | |
| d1wp5a_ | 323 | Topoisomerase IV subunit A, ParC, C-terminal domai | 89.86 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 86.26 | |
| d1suua_ | 304 | DNA gyrase A C-terminal domain {Lyme disease spiro | 81.52 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=8.1e-39 Score=336.11 Aligned_cols=285 Identities=25% Similarity=0.472 Sum_probs=264.1
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecC
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 624 (834)
..+|.||.+.|++|+|+|++++||+|+.||+|+|||+.+++.+.++.+|...|.+++|++++.++++++.++.+.+|+..
T Consensus 10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (317)
T d1vyhc1 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 89 (317)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccc
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeE
Q 003279 625 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYI 703 (834)
Q Consensus 625 s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I 703 (834)
.... ...+..|...+.++.|++++. .+++++.|+.+++||+++++.+..+.. ...+.+++|++++..|++++.|+.|
T Consensus 90 ~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v 167 (317)
T d1vyhc1 90 GFEC-IRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 167 (317)
T ss_dssp SSCE-EECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred cccc-ccccccccccceeeeccCCCc-eEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeE
Confidence 7553 667788999999999999977 566889999999999999998888874 5668999999999999999999999
Q ss_pred EEEECCCCeEEEEEeCCCCCEEEEEEcCCC--------------------CEEEEEe-CCeEEEEEcCCCCCceeEEEee
Q 003279 704 SILDVETQVCRLKLQGHKNQVHSVCWNTSG--------------------EYLASVS-DELVRVWSIGSGSKGECIHELS 762 (834)
Q Consensus 704 ~iwDl~t~~~~~~l~~h~~~I~sl~~spdg--------------------~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~ 762 (834)
++|++.++.....+.+|...+.+++|+|++ .++++++ |+.|++||+.++ .++..+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~---~~~~~~~ 244 (317)
T d1vyhc1 168 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLV 244 (317)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEEE
T ss_pred EEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC---cEEEEEe
Confidence 999999999999999999999999998753 4677777 999999999988 7888999
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 763 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 763 ~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.|...|.+++|+|++++|++++.|+.|++||+.+++++ .+.+|...|++++|+|++++||+|+.||+|+|||
T Consensus 245 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 99999999999999999999999999999999998877 6779999999999999999999999999999998
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.7e-38 Score=341.31 Aligned_cols=286 Identities=16% Similarity=0.233 Sum_probs=252.8
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE-----EEEeccCCCCeEEEEECCCCCEEEEEeCC
Q 003279 541 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-----KSTLEEHTQWITDVRFSPSLSRLATSSAD 615 (834)
Q Consensus 541 ~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~-----~~~l~~h~~~I~~l~fspdg~~Latgs~D 615 (834)
....+..+ .|...|+|++|+|+|++||+|+ ||.|+|||+.+... .....+|.+.|.+++|+|++++|++++.|
T Consensus 41 ~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d 118 (337)
T d1gxra_ 41 HARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA 118 (337)
T ss_dssp EEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS
T ss_pred CceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecc
Confidence 33455566 8999999999999999999997 89999999876432 23446799999999999999999999999
Q ss_pred CeEEEEecCCCCc-eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCE
Q 003279 616 RTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR 693 (834)
Q Consensus 616 g~I~IWDl~s~~~-~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ 693 (834)
++|++||+..... ....+..|...|.+++|+|++. ++++++.|+.|++||+.++++...... ...+.+++|++++..
T Consensus 119 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ 197 (337)
T d1gxra_ 119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK 197 (337)
T ss_dssp SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred cccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999976443 3466778999999999999966 677899999999999999988777664 667999999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003279 694 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 772 (834)
Q Consensus 694 ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sva 772 (834)
+++++.|+.|++||+++++.+..+. |...|.+++|+|++.+|++++ |+.|++||+++.. . .....|...|.+++
T Consensus 198 ~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~---~-~~~~~~~~~i~~v~ 272 (337)
T d1gxra_ 198 LWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD---K-YQLHLHESCVLSLK 272 (337)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC---E-EEECCCSSCEEEEE
T ss_pred cccccccccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccc---c-ccccccccccceEE
Confidence 9999999999999999999887776 889999999999999999988 9999999998863 3 34567888999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 773 FHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 773 fspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|+|++++|++++.|+.|++||+.+++.+....|...|.+++|+|++++||+|+.||.|+|||
T Consensus 273 ~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWd 334 (337)
T d1gxra_ 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 99999999999999999999999999997778999999999999999999999999999997
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5.7e-37 Score=327.42 Aligned_cols=288 Identities=18% Similarity=0.362 Sum_probs=255.1
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 003279 542 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 621 (834)
Q Consensus 542 ~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 621 (834)
+...++|+||.+.|++|+|+|++++||+|+.||+|+|||+.+++.+..+..|...|.+++|+|++.+|++|+.|+.|++|
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecc
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCc---eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-cCCCeeEEEEecCCCEEEEE
Q 003279 622 DTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 622 Dl~s~~~---~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-~~~~i~~l~~sp~g~~ll~~ 697 (834)
+...... ....+.+|...+.......+ ..++.+..+.....++........... ....+....+.+....++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (340)
T d1tbga_ 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp ESSSSCSCCCEEEEECCCSSCEEEEEEEET--TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred cccccccccccceecccccccccccccccc--cccccccccccccccccccccccccccccceeEeeeccccccceeEEe
Confidence 9875432 34556777777777666654 356677789999999988776655554 35678889999999999999
Q ss_pred EcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe--ecCCCceEEEEEe
Q 003279 698 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL--SCTGNKFHSCVFH 774 (834)
Q Consensus 698 s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~--~~~~~~I~svafs 774 (834)
+.|+.|++||+++++++..+.+|...|++++|+|++.+|++++ |+.|++||++.. ..+..+ ..+...|.+++|+
T Consensus 203 ~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~---~~~~~~~~~~~~~~i~~~~~s 279 (340)
T d1tbga_ 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSFS 279 (340)
T ss_dssp ETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEEC
T ss_pred ecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc---ccccccccccccCceEEEEEC
Confidence 9999999999999999999999999999999999999999998 999999999887 444443 4556779999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 775 PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 775 pdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
|++.+|++++.|+.|++||+.+++.+ .+.+|.+.|++++|+|++.+||||+.||.|+|||
T Consensus 280 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 99999999999999999999998887 7778999999999999999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.2e-37 Score=335.85 Aligned_cols=283 Identities=28% Similarity=0.442 Sum_probs=246.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec------------------cCCCCeEEEEECCCCCEEE
Q 003279 549 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------------------EHTQWITDVRFSPSLSRLA 610 (834)
Q Consensus 549 ~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~------------------~h~~~I~~l~fspdg~~La 610 (834)
.+|++.|+||+|+|||++||+|+ |++|+|||+.+++.+..+. .|...|++++|+|++++|+
T Consensus 59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~ 137 (388)
T d1erja_ 59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137 (388)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence 36999999999999999999987 8999999999988876664 4667799999999999999
Q ss_pred EEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEec-
Q 003279 611 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP- 689 (834)
Q Consensus 611 tgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp- 689 (834)
+|+.||.|++||...+. .+..+.+|...|.+++|++++. .+++++.++.|++||+++..............++.+.+
T Consensus 138 s~~~dg~v~i~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 215 (388)
T d1erja_ 138 TGAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG 215 (388)
T ss_dssp EEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECST
T ss_pred ecccccccccccccccc-cccccccccccccccccccccc-cccccccceeeeeeeccccccccccccccccccccccCC
Confidence 99999999999999765 4777888999999999999866 56688899999999999999888888878877777776
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEE-------eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-------
Q 003279 690 RLGRILAAAIENYISILDVETQVCRLKL-------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------- 754 (834)
Q Consensus 690 ~g~~ll~~s~dg~I~iwDl~t~~~~~~l-------~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~------- 754 (834)
++.+|++++.|+.|++||++++.....+ .+|...|.+++|+|++.+|++++ |+.|++||+.+...
T Consensus 216 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 295 (388)
T d1erja_ 216 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295 (388)
T ss_dssp TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred CCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccc
Confidence 6788999999999999999998776654 35788999999999999999998 99999999986532
Q ss_pred --ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEE------eCCCCEEEEEe
Q 003279 755 --GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAA------STVNGMVASAS 825 (834)
Q Consensus 755 --~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~laf------spdg~~LaSgs 825 (834)
..+......|...|.+++|+|++.+|++++.|+.|++||+.+++.+ .+.+|.+.|.++++ +|++.+||||+
T Consensus 296 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s 375 (388)
T d1erja_ 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375 (388)
T ss_dssp ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred cccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEe
Confidence 2344556678889999999999999999999999999999999887 78899999999975 57889999999
Q ss_pred cCCcEEEeC
Q 003279 826 HDKCVKIWK 834 (834)
Q Consensus 826 ~DG~I~IWd 834 (834)
.||+|+|||
T Consensus 376 ~Dg~I~iW~ 384 (388)
T d1erja_ 376 GDCKARIWK 384 (388)
T ss_dssp TTSEEEEEE
T ss_pred CCCEEEEEe
Confidence 999999996
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.1e-35 Score=312.78 Aligned_cols=284 Identities=15% Similarity=0.158 Sum_probs=234.8
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 544 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
..+++.||.+.|++|+|+|||++||+|+.||+|+|||+++++.+..+. .|...|++++|+|++. +++++.|+.|++|+
T Consensus 4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~ 82 (299)
T d1nr0a2 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVP 82 (299)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEEC
T ss_pred cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEec
Confidence 467889999999999999999999999999999999999999988874 6899999999999986 55667899999999
Q ss_pred cCCCCc--eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcC
Q 003279 623 TENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 700 (834)
Q Consensus 623 l~s~~~--~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d 700 (834)
+..... .......+...+.+++|++++..++ ++ .++.+++|+... .........+.+++|+|++.++++++.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~-~~-~~~~i~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g~~d 157 (299)
T d1nr0a2 83 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV-AA-CYKHIAIYSHGK---LTEVPISYNSSCVALSNDKQFVAVGGQD 157 (299)
T ss_dssp SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEE-EE-ESSEEEEEETTE---EEEEECSSCEEEEEECTTSCEEEEEETT
T ss_pred cCCcccccccccccccccccccccccccccccc-cc-cccccccccccc---cccccccccccccccccccccccccccc
Confidence 875432 1233445778899999999987444 33 367899999542 3334455678999999999999999999
Q ss_pred CeEEEEECCCCeEEE-EEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003279 701 NYISILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 778 (834)
Q Consensus 701 g~I~iwDl~t~~~~~-~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~ 778 (834)
+.|++||++++.... ....|...|++++|+|++.+|++++ |+.|++||+.++........+..|...|.+++|+|++.
T Consensus 158 g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 237 (299)
T d1nr0a2 158 SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 237 (299)
T ss_dssp SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999886543 3446899999999999999999998 99999999988755445556777889999999999999
Q ss_pred EEEEEEcCCeEEEEECCCCeEE---Eecc-CCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 779 SLLVIGCYETLELWNMTENKTL---TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 779 ~L~sgs~dg~I~Iwdl~~~~~~---~l~~-h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+|++++.|+.|++||+.++... .... +...|.++.| +++++|++|+.||.|+|||
T Consensus 238 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWd 296 (299)
T d1nr0a2 238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWN 296 (299)
T ss_dssp EEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred ceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEe
Confidence 9999999999999999876432 2333 3456666655 5678999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.8e-35 Score=317.42 Aligned_cols=280 Identities=16% Similarity=0.216 Sum_probs=238.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCce
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 629 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~ 629 (834)
.+.+.+.+++++|+|+.||.++ ++.|.+||+++......+.+|.+.|++++|+|++++||+|+.||+|+|||+.+....
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~ 93 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc
Confidence 4556678899999999999986 568999999999999999999999999999999999999999999999999987653
Q ss_pred -eeeeccCCCCeEEEEEccCCCcEEEEEeC--CCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCE-EEEEEcCCeEE
Q 003279 630 -LRTFTGHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR-ILAAAIENYIS 704 (834)
Q Consensus 630 -i~~~~~h~~~V~sl~fspdg~~llasgs~--Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~-ll~~s~dg~I~ 704 (834)
...+..|...|.+++|+|++..++ +++. +..+++|++++++....+.. ...|.+++|+|++.+ |++++.|+.|+
T Consensus 94 ~~~~~~~~~~~v~~v~~s~d~~~l~-~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~ 172 (311)
T d1nr0a1 94 LKTTIPVFSGPVKDISWDSESKRIA-AVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA 172 (311)
T ss_dssp EEEEEECSSSCEEEEEECTTSCEEE-EEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred cccccccccCccccccccccccccc-cccccccccccccccccccccccccccccccccccccccceeeecccccccccc
Confidence 355778999999999999987555 5543 56799999999988877764 456999999999886 67788899999
Q ss_pred EEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe-------ecCCCceEEEEEeCC
Q 003279 705 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-------SCTGNKFHSCVFHPT 776 (834)
Q Consensus 705 iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~-------~~~~~~I~svafspd 776 (834)
+||+++++....+..|...|++++|+|++.+|++++ |+.|++||+.++. .+..+ .+|...|.+++|+|+
T Consensus 173 i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~---~~~~~~~~~~~~~~h~~~V~~~~~s~~ 249 (311)
T d1nr0a1 173 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT---KTGVFEDDSLKNVAHSGSVFGLTWSPD 249 (311)
T ss_dssp EEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---EEEECBCTTSSSCSSSSCEEEEEECTT
T ss_pred cccccccccccccccccccccccccCcccccccccccccccccccccccc---ccccccccccccccccccccccccCCC
Confidence 999999999999999999999999999999999998 9999999998873 33333 246788999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEE-EeccCCC-CeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 777 FPSLLVIGCYETLELWNMTENKTL-TLSAHDK-LVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 777 g~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~-~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+.+|++++.|+.|+|||+.+++++ .+..|.. ....+.+.+++.+|++++.||.|++||
T Consensus 250 ~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd 309 (311)
T d1nr0a1 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309 (311)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEe
Confidence 999999999999999999999987 4444432 233344445566799999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.2e-34 Score=308.10 Aligned_cols=270 Identities=18% Similarity=0.285 Sum_probs=236.0
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
.++|++|+ |+.|++|......... ........+|.+.|.+|+|+||+++|++|+.||.|++||+.
T Consensus 63 g~~latg~-dg~V~iWd~~~~~~~~--------------~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~ 127 (337)
T d1gxra_ 63 TRHVYTGG-KGCVKVWDISHPGNKS--------------PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127 (337)
T ss_dssp SSEEEEEC-BSEEEEEETTSTTCCS--------------CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred CCEEEEEE-CCEEEEEEccCCcccc--------------eeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence 37899998 8999999765432210 11233456899999999999999999999999999999987
Q ss_pred C--CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC
Q 003279 583 S--FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 660 (834)
Q Consensus 583 t--~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg 660 (834)
. .+....+..|...|.+++|+|++.++++++.|+.|++||+.++. .......|...|.+++|++++. .+++++.|+
T Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~-~~~~~~~~~~~v~~l~~s~~~~-~~~~~~~d~ 205 (337)
T d1gxra_ 128 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISNDGT-KLWTGGLDN 205 (337)
T ss_dssp CC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc-ccccccccc
Confidence 4 45667788999999999999999999999999999999999765 4677788999999999999976 566888999
Q ss_pred cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 003279 661 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 661 ~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs 740 (834)
.|++||+++++.+..+.+...+.+++|+|++..+++++.|+.|++||++++... ....|...|++++|+|++++|++++
T Consensus 206 ~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s 284 (337)
T d1gxra_ 206 TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTG 284 (337)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEE
T ss_pred cccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECCCCCEEEEEe
Confidence 999999999999999999999999999999999999999999999999988765 4456999999999999999999998
Q ss_pred -CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 741 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 741 -Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
|+.|++||+.++ ..+..+. |...|.+++|+|++++|++++.|+.|+|||+
T Consensus 285 ~Dg~i~iwd~~~~---~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 285 KDNLLNAWRTPYG---ASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TTSEEEEEETTTC---CEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEECCCC---CEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 999999999987 4555543 6789999999999999999999999999996
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.7e-34 Score=316.29 Aligned_cols=279 Identities=16% Similarity=0.199 Sum_probs=232.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc
Q 003279 551 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 628 (834)
Q Consensus 551 H~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~ 628 (834)
+.++|+|++|+|||++||+|+.|+.|+|||..+++ .+..+.+|.++|++|+|+|++++|++|+.|++|+|||+.+...
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence 34679999999999999999999999999998765 5677899999999999999999999999999999999987653
Q ss_pred -eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-----cCCCeeEEEEecCCCEEEEEEcCCe
Q 003279 629 -SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----CQSGATQMRFQPRLGRILAAAIENY 702 (834)
Q Consensus 629 -~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-----~~~~i~~l~~sp~g~~ll~~s~dg~ 702 (834)
....+.+|...|.+++|+|++. .|++++.|+.|++|++.......... +...|.+++|+|++.+|++++.|+.
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~ 164 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 164 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred ccccccccccccccccccccccc-cceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcE
Confidence 2345677899999999999976 66688999999999987765433222 3567999999999999999999999
Q ss_pred EEEEECCC------------------CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003279 703 ISILDVET------------------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 763 (834)
Q Consensus 703 I~iwDl~t------------------~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 763 (834)
|++||+.. +........|...|.+++|+|++.+|++++ |+.|++||+.++ ..+..+..
T Consensus 165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~---~~~~~~~~ 241 (371)
T d1k8kc_ 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---MAVATLAS 241 (371)
T ss_dssp EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT---TEEEEEEC
T ss_pred EEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecc---cceeeeec
Confidence 99999764 245667778999999999999999999998 999999999887 67888889
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCeEE----------------------------------------E
Q 003279 764 TGNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTL----------------------------------------T 801 (834)
Q Consensus 764 ~~~~I~svafspdg~~L~sgs~dg~I~Iw--dl~~~~~~----------------------------------------~ 801 (834)
|..+|.+++|+|++.+|+ ++.|+.+++| +...+... .
T Consensus 242 ~~~~v~s~~fs~d~~~la-~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (371)
T d1k8kc_ 242 ETLPLLAVTFITESSLVA-AGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL 320 (371)
T ss_dssp SSCCEEEEEEEETTEEEE-EETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred ccccceeeeecCCCCEEE-EEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEecccccccee
Confidence 999999999999997665 4557755554 43322211 0
Q ss_pred eccCCCCeEEEEEeCCC----CEEEEEecCCcEEEeC
Q 003279 802 LSAHDKLVSSLAASTVN----GMVASASHDKCVKIWK 834 (834)
Q Consensus 802 l~~h~~~V~~lafspdg----~~LaSgs~DG~I~IWd 834 (834)
...|.+.|+++++.+.+ ..|+|++.||.|+|||
T Consensus 321 ~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~ 357 (371)
T d1k8kc_ 321 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357 (371)
T ss_dssp SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred cccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEe
Confidence 01388899999998855 3699999999999996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.1e-33 Score=300.31 Aligned_cols=247 Identities=16% Similarity=0.232 Sum_probs=215.1
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--EEEeccCCCCeEEEEECCCCCEEEEEeCC--CeEEE
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSAD--RTVRV 620 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~--~~~l~~h~~~I~~l~fspdg~~Latgs~D--g~I~I 620 (834)
...+.+|.+.|+|++|+|+|++||+|+.||+|+|||+.+... ...+..|...|.+++|+|++++|++++.+ ..++|
T Consensus 51 ~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v 130 (311)
T d1nr0a1 51 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV 130 (311)
T ss_dssp CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE
T ss_pred eEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccc
Confidence 345689999999999999999999999999999999987654 35678899999999999999999999864 56999
Q ss_pred EecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEc
Q 003279 621 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI 699 (834)
Q Consensus 621 WDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~ 699 (834)
|++++... ...+.+|...|.+++|+|+++.+|++|+.|+.|++||+++++....+.. ...|.++.|+|++.++++++.
T Consensus 131 ~~~~~~~~-~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~ 209 (311)
T d1nr0a1 131 FLFDTGTS-NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG 209 (311)
T ss_dssp EETTTCCB-CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred cccccccc-cccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccc
Confidence 99997654 6778899999999999999998899999999999999999998888765 567999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEe-------CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCC-ceEE
Q 003279 700 ENYISILDVETQVCRLKLQ-------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN-KFHS 770 (834)
Q Consensus 700 dg~I~iwDl~t~~~~~~l~-------~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~-~I~s 770 (834)
|+.|++||+.++..+..+. +|...|++++|+|++.+|++++ |+.|+|||++++ +++..+..+.. ....
T Consensus 210 d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~---~~~~~l~~~~~~~~~~ 286 (311)
T d1nr0a1 210 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL---KVEKTIPVGTRIEDQQ 286 (311)
T ss_dssp TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSGGGCE
T ss_pred cccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC---cEEEEEECCCCccceE
Confidence 9999999999988777664 4788999999999999999999 999999999988 67777765543 2233
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 771 CVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 771 vafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
+.+.+++..|++++.||.|++||.+
T Consensus 287 ~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 287 LGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEEECSSCEEEEETTCCEEEEETT
T ss_pred EEEEecCCEEEEEECCCEEEEEeCC
Confidence 4455556679999999999999974
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.8e-32 Score=284.00 Aligned_cols=278 Identities=23% Similarity=0.443 Sum_probs=248.9
Q ss_pred CCceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeE
Q 003279 477 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 556 (834)
Q Consensus 477 ~~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~ 556 (834)
.+..++.|++++ +++++|+.|++|++|..... ..+..+.+|.+.|.
T Consensus 18 ~~I~~l~~sp~~---------------~~l~s~s~Dg~i~iWd~~~~-------------------~~~~~~~~h~~~V~ 63 (317)
T d1vyhc1 18 SPVTRVIFHPVF---------------SVMVSASEDATIKVWDYETG-------------------DFERTLKGHTDSVQ 63 (317)
T ss_dssp SCEEEEEECSSS---------------SEEEEEESSSCEEEEETTTC-------------------CCCEEECCCSSCEE
T ss_pred CCeEEEEEcCCC---------------CEEEEEeCCCeEEEEECCCC-------------------CEEEEEeCCCCcEE
Confidence 456677777654 68999999999999965432 12456789999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccC
Q 003279 557 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 636 (834)
Q Consensus 557 sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h 636 (834)
+++|++++.++++++.++.+.+|+....+....+..|...+.++.|++++..+++++.|+.+++||+.++. .+..+.+|
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~ 142 (317)
T d1vyhc1 64 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGH 142 (317)
T ss_dssp EEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECC
T ss_pred EEeeecccccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccce-eeeEEccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999866 47788899
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecC--------------------CCEEE
Q 003279 637 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPR--------------------LGRIL 695 (834)
Q Consensus 637 ~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~--------------------g~~ll 695 (834)
...+.+++|++++. +|++++.|+.|++|++.+++....+.. ...+.++.|+|+ +..++
T Consensus 143 ~~~~~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (317)
T d1vyhc1 143 REWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL 221 (317)
T ss_dssp SSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE
T ss_pred CCcceeeecccCCC-EEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeE
Confidence 99999999999976 677999999999999999988877764 456777877764 35688
Q ss_pred EEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEe
Q 003279 696 AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 774 (834)
Q Consensus 696 ~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafs 774 (834)
+++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++ |+.|+|||+.++ +++..+..|...|++++|+
T Consensus 222 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~h~~~V~~~~~s 298 (317)
T d1vyhc1 222 SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK---RCMKTLNAHEHFVTSLDFH 298 (317)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS---CCCEEEECCSSCEEEEEEC
T ss_pred eccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCC---cEEEEEcCCCCCEEEEEEc
Confidence 999999999999999999999999999999999999999999988 999999999987 6788889999999999999
Q ss_pred CCCCEEEEEEcCCeEEEEE
Q 003279 775 PTFPSLLVIGCYETLELWN 793 (834)
Q Consensus 775 pdg~~L~sgs~dg~I~Iwd 793 (834)
|++++|++++.|+.|+|||
T Consensus 299 ~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 299 KTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SSSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEeCCCeEEEeC
Confidence 9999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.5e-32 Score=296.79 Aligned_cols=286 Identities=22% Similarity=0.356 Sum_probs=227.8
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
..+|++|+ |+.|++|...+............. .............+|...|++++|+|+|++|++|+.||.|++||..
T Consensus 74 g~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~ 151 (388)
T d1erja_ 74 GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE 151 (388)
T ss_dssp SSEEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCEEEEEe-CCeEEEEEecccceEeeecccccc-cccccccccccccCCCCCEEEEEECCCCCcceeccccccccccccc
Confidence 37899997 899999977554321111000000 0011111233456789999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 003279 583 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 662 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 662 (834)
.++.+..+.+|...|.+++|++++..+++++.++.|++||+.+... ..... +...+.++.+.+....+|++++.|+.|
T Consensus 152 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i 229 (388)
T d1erja_ 152 NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAV 229 (388)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSTTCCEEEEEETTSCE
T ss_pred ccccccccccccccccccccccccccccccccceeeeeeecccccc-ccccc-cccccccccccCCCCCeEEEEcCCCeE
Confidence 9999999999999999999999999999999999999999987543 33343 445566777777656688899999999
Q ss_pred EEEECCCCceeeEee--------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe------------EEEEEeCCCC
Q 003279 663 RYWSINNGSCAGVFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQV------------CRLKLQGHKN 722 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~--------~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~------------~~~~l~~h~~ 722 (834)
++||+.++.....+. +...|.+++|+|++.+|++++.|+.|++||++++. +......|..
T Consensus 230 ~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (388)
T d1erja_ 230 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309 (388)
T ss_dssp EEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSS
T ss_pred EEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccc
Confidence 999999988777654 24569999999999999999999999999997643 3445567889
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEE------eCCCCEEEEEEcCCeEEEEECC
Q 003279 723 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF------HPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 723 ~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svaf------spdg~~L~sgs~dg~I~Iwdl~ 795 (834)
.|.+++|+|++++|++++ |+.|++||+.++ +++..+.+|...|.++++ +|++.+|++++.|++|+||+++
T Consensus 310 ~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~---~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 310 FVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp CEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCEEEEEECCCC---cEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 999999999999999999 999999999988 788899999999999875 6789999999999999999975
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-31 Score=286.06 Aligned_cols=299 Identities=18% Similarity=0.285 Sum_probs=238.5
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
++++++|+.|+.|++|+.... ..+..+.+|.+.|++++|++++ +|++|+.|++|++|+..
T Consensus 23 ~~~l~tgs~Dg~i~vWd~~~~-------------------~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~ 82 (355)
T d1nexb2 23 DNYVITGADDKMIRVYDSINK-------------------KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK 82 (355)
T ss_dssp TTEEEEEETTTEEEEEETTTT-------------------EEEEEEECCSSCEEEEEEETTT-EEEEEETTCCEEEEETT
T ss_pred CCEEEEEeCCCeEEEEECCCC-------------------cEEEEEECCCCCEEEEEEcCCC-EEEEEeccccccccccc
Confidence 478999999999999965322 3467788999999999999864 89999999999999999
Q ss_pred CCeEEEEeccCC--CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCce----------------------eeeeccCCC
Q 003279 583 SFTVKSTLEEHT--QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS----------------------LRTFTGHST 638 (834)
Q Consensus 583 t~~~~~~l~~h~--~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~----------------------i~~~~~h~~ 638 (834)
..+.......+. ..+..+.+.+++.++++++.|+.|++||+.+.... ......|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (355)
T d1nexb2 83 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 162 (355)
T ss_dssp TTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSS
T ss_pred ccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccc
Confidence 988876665433 34556777889999999999999999999764321 112223444
Q ss_pred CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 003279 639 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 717 (834)
Q Consensus 639 ~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l 717 (834)
.+.+... ++ .+++++..|+.|++||+.+++.+..... ...+.++.+++++..+++++.|+.|++||++++..+..+
T Consensus 163 ~v~~~~~--~~-~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 239 (355)
T d1nexb2 163 SVRTVSG--HG-NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 239 (355)
T ss_dssp CEEEEEE--ET-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred ccccccc--cc-ceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccc
Confidence 4444443 33 3777899999999999999988877763 567889999999999999999999999999999999999
Q ss_pred eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE-EEeCCCCEEEEEEcCCeEEEEECC
Q 003279 718 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 718 ~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv-afspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
.+|...|.+++|+ +++|++++ |+.|++||+.+.. . .+..|...+.++ ++++++.+ ++++.|+.|+|||++
T Consensus 240 ~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~---~--~~~~~~~~~~~~~~~~~~~~~-l~~g~d~~i~vwd~~ 311 (355)
T d1nexb2 240 QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS---R--KFSYHHTNLSAITTFYVSDNI-LVSGSENQFNIYNLR 311 (355)
T ss_dssp CCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCC---E--EEEEECTTCCCCCEEEECSSE-EEEEETTEEEEEETT
T ss_pred ccccccccccccc--cceeeeeecccccccccccccc---e--ecccccCCceEEEEEcCCCCE-EEEEeCCEEEEEECC
Confidence 9999999999997 46888888 9999999998763 2 233444555554 55666665 455568999999999
Q ss_pred CCeEE--EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 796 ENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 796 ~~~~~--~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
+++.+ .+.+|...|.+++|+|+ .++++++.||.++||
T Consensus 312 tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~ 350 (355)
T d1nexb2 312 SGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLE 350 (355)
T ss_dssp TCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEE
T ss_pred CCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEE
Confidence 99887 45689999999999986 578889999997776
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.5e-32 Score=286.20 Aligned_cols=282 Identities=18% Similarity=0.301 Sum_probs=221.3
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
...++|+||++.|.+ +++++|++||||+.||+|+|||+.+++++.++.+|...|.+++|+++ +|++++.|+.+++|+
T Consensus 7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~ 83 (342)
T d2ovrb2 7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWN 83 (342)
T ss_dssp CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEE
T ss_pred CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccc
Confidence 456789999999865 36678999999999999999999999999999999999999999875 999999999999999
Q ss_pred cCCCCceeeeeccCCCCeEEE--------------------------------------EEccCCCcEEEEEeCCCcEEE
Q 003279 623 TENPDYSLRTFTGHSTTVMSL--------------------------------------DFHPSKEDLLCSCDNNSEIRY 664 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl--------------------------------------~fspdg~~llasgs~Dg~I~l 664 (834)
...... ......+...+... .+.+. ..++++++.|+.|++
T Consensus 84 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~ 161 (342)
T d2ovrb2 84 AETGEC-IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD-GRRVVSGAYDFMVKV 161 (342)
T ss_dssp TTTTEE-EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC-SSCEEEEETTSCEEE
T ss_pred cccccc-eecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccc-cceeeeecCCCeEEE
Confidence 875432 11111111111111 11122 224557778889999
Q ss_pred EECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCe
Q 003279 665 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DEL 743 (834)
Q Consensus 665 wDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~ 743 (834)
||+.....+..+..+ ......+.+++.++++++.|+.|++||++.++++..+.+|...+.++++++ .+|++++ |+.
T Consensus 162 ~d~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~ 238 (342)
T d2ovrb2 162 WDPETETCLHTLQGH-TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADST 238 (342)
T ss_dssp EEGGGTEEEEEECCC-SSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSC
T ss_pred eecccceeeEEEcCc-ccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCE
Confidence 998888877776543 344556667889999999999999999999999999999999999888864 6888888 999
Q ss_pred EEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-Ee-----ccCCCCeEEEEEeCC
Q 003279 744 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL-----SAHDKLVSSLAASTV 817 (834)
Q Consensus 744 I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l-----~~h~~~V~~lafspd 817 (834)
|++||+........+.....|...+.++.++ +.++++++.||.|++||+++++.+ .+ .+|...|++++|+|+
T Consensus 239 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~ 316 (342)
T d2ovrb2 239 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT 316 (342)
T ss_dssp EEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred EEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCC
Confidence 9999998874322232233345566666665 568999999999999999999876 22 257788999999999
Q ss_pred CCEEEEEecCCc----EEEeC
Q 003279 818 NGMVASASHDKC----VKIWK 834 (834)
Q Consensus 818 g~~LaSgs~DG~----I~IWd 834 (834)
+.+||+|+.||+ |++||
T Consensus 317 ~~~la~g~~dGt~~~~l~~~D 337 (342)
T d2ovrb2 317 KLVCAVGSRNGTEETKLLVLD 337 (342)
T ss_dssp EEEEEEECSSSSSCCEEEEEE
T ss_pred CCEEEEEeCCCCCeeEEEEEe
Confidence 999999999985 89997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.3e-31 Score=281.87 Aligned_cols=280 Identities=16% Similarity=0.248 Sum_probs=222.6
Q ss_pred EEEEecCCCCCe-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 544 EFQLIPASTSKV-ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 544 ~~~~l~gH~~~V-~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
+..+|+||.+.| +|++| ++++||+|+.||+|+|||+.+++.+.++.+|.+.|++++|+++ .+|++|+.|++|++|+
T Consensus 4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~ 80 (355)
T d1nexb2 4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80 (355)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred CcEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccc
Confidence 356799999886 55555 6789999999999999999999999999999999999999985 5899999999999999
Q ss_pred cCCCCceeeeec-cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec----------------------C
Q 003279 623 TENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----------------------Q 679 (834)
Q Consensus 623 l~s~~~~i~~~~-~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~----------------------~ 679 (834)
+........... .+...+..+.+.+++. ++++++.|+.|++||+.+......... .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
T d1nexb2 81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 159 (355)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEEETTEE-EEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred ccccccccccccccccccccccccccccc-eeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence 987654322222 2233345556677654 677899999999999987654432211 0
Q ss_pred CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeE
Q 003279 680 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI 758 (834)
Q Consensus 680 ~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i 758 (834)
.......+.+++..++++..|+.|++||+++++.+..+.++...+.++.|++++.++++++ |+.|++||+.++ ..+
T Consensus 160 ~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~---~~~ 236 (355)
T d1nexb2 160 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG---ELM 236 (355)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTC---CEE
T ss_pred ccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccc---ccc
Confidence 1122345566788999999999999999999999999999999999999999999999998 999999999988 778
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEE-EEeCCCCEEEEEecCCcEEEeC
Q 003279 759 HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSL-AASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 759 ~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~l-afspdg~~LaSgs~DG~I~IWd 834 (834)
..+..|...|.+++|++ ++|++++.|+.|++||+.+..... ..|...+.++ ++++++.+|++| .||.|+|||
T Consensus 237 ~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd 309 (355)
T d1nexb2 237 YTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKF-SYHHTNLSAITTFYVSDNILVSG-SENQFNIYN 309 (355)
T ss_dssp EEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEE-EEECTTCCCCCEEEECSSEEEEE-ETTEEEEEE
T ss_pred ccccccccccccccccc--ceeeeeecccccccccccccceec-ccccCCceEEEEEcCCCCEEEEE-eCCEEEEEE
Confidence 88899999999999875 589999999999999999887553 3455555554 566777776665 589999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3e-31 Score=291.76 Aligned_cols=286 Identities=15% Similarity=0.179 Sum_probs=231.2
Q ss_pred CceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEE
Q 003279 478 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 557 (834)
Q Consensus 478 ~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~s 557 (834)
+..++.|++++ .++++|+.|+.|++|.... ..+..+..+.+|.++|++
T Consensus 9 pIt~~~~s~dg---------------~~la~~~~~~~i~iw~~~~-----------------~~~~~~~~l~gH~~~V~~ 56 (371)
T d1k8kc_ 9 PISCHAWNKDR---------------TQIAICPNNHEVHIYEKSG-----------------NKWVQVHELKEHNGQVTG 56 (371)
T ss_dssp CCCEEEECTTS---------------SEEEEECSSSEEEEEEEET-----------------TEEEEEEEEECCSSCEEE
T ss_pred CeEEEEECCCC---------------CEEEEEeCCCEEEEEECCC-----------------CCEEEEEEecCCCCCEEE
Confidence 56677887766 6889999999999995421 234557788999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEE--EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCce---eee
Q 003279 558 CHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS---LRT 632 (834)
Q Consensus 558 l~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~--~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~---i~~ 632 (834)
|+|+|++++|++|+.|++|+|||+.++... ..+.+|...|++++|+|++++|++++.|++|++|+++..... ...
T Consensus 57 l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~ 136 (371)
T d1k8kc_ 57 VDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI 136 (371)
T ss_dssp EEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred EEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccc
Confidence 999999999999999999999999876544 456789999999999999999999999999999998865532 344
Q ss_pred eccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc------------------eeeEe-ecCCCeeEEEEecCCCE
Q 003279 633 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------------------CAGVF-KCQSGATQMRFQPRLGR 693 (834)
Q Consensus 633 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~------------------~i~~~-~~~~~i~~l~~sp~g~~ 693 (834)
...|...|.+++|+|++. +|++|+.|+.|++||+.... .+... .+...+.+++|+|++.+
T Consensus 137 ~~~~~~~v~~v~~~p~~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 215 (371)
T d1k8kc_ 137 KKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR 215 (371)
T ss_dssp CTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSE
T ss_pred cccccccccccccccccc-ceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccc
Confidence 567889999999999976 66799999999999986532 12222 23456899999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcee----------E-----
Q 003279 694 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGEC----------I----- 758 (834)
Q Consensus 694 ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~----------i----- 758 (834)
|++++.|+.|++||+.++..+..+..|..+|.+++|+|++.+|++|.|+.+++|.......... .
T Consensus 216 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (371)
T d1k8kc_ 216 VAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL 295 (371)
T ss_dssp EEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------
T ss_pred ccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeeecCccccccccc
Confidence 9999999999999999999999999999999999999999999988888777766543211000 0
Q ss_pred -----------------------EEeecCCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCC
Q 003279 759 -----------------------HELSCTGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTE 796 (834)
Q Consensus 759 -----------------------~~~~~~~~~I~svafspdg----~~L~sgs~dg~I~Iwdl~~ 796 (834)
.....|.+.|+++++.+.+ ..|++++.||.|+|||+++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 296 TARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 0011267789999998755 3588999999999999854
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=7.3e-30 Score=264.51 Aligned_cols=274 Identities=20% Similarity=0.375 Sum_probs=220.5
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 003279 542 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 621 (834)
Q Consensus 542 ~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 621 (834)
+..+.....|...|+|++| ||++||+|+.||+|+|||+.+++++.++.+|.+.|++++| ++++|++|+.|+.|++|
T Consensus 5 ~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~ 80 (293)
T d1p22a2 5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW 80 (293)
T ss_dssp CCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred EEEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccc
Confidence 3456777889999999765 7899999999999999999999999999999999999988 56799999999999999
Q ss_pred ecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee----cCCCeeEEEEecCCCEEEEE
Q 003279 622 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 622 Dl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~----~~~~i~~l~~sp~g~~ll~~ 697 (834)
++..+.. ......+...... +.+... .++++..++.+.+||+.......... +...+..+.+. ...++++
T Consensus 81 ~~~~~~~-~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~ 154 (293)
T d1p22a2 81 DVNTGEM-LNTLIHHCEAVLH--LRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSA 154 (293)
T ss_dssp ESSSCCE-EEEECCCCSCEEE--EECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEE
T ss_pred ccccccc-ccccccccccccc--cccccc-ceeecccccceeEeeccccccccccccccccccccccceec--ccccccc
Confidence 9998664 3333333333333 333333 56688889999999998765433222 23445555554 4678899
Q ss_pred EcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC
Q 003279 698 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 776 (834)
Q Consensus 698 s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspd 776 (834)
+.|+.|++||+++++.+..+.++...+..+.++ +.++++++ |+.|++||+++. ..+.....+...+.. ++++
T Consensus 155 s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~--~~~~ 227 (293)
T d1p22a2 155 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRC--IRFD 227 (293)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEE--EECC
T ss_pred cCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccc---eeeeeecccceeeee--cccc
Confidence 999999999999999999999999999888876 56788887 999999999987 677777777777654 5677
Q ss_pred CCEEEEEEcCCeEEEEECCCC---------eE-EEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 777 FPSLLVIGCYETLELWNMTEN---------KT-LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 777 g~~L~sgs~dg~I~Iwdl~~~---------~~-~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+.+|++++.|+.|++||+... .. ..+.+|.+.|++++|+ +.+|+||+.||+|+|||
T Consensus 228 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 228 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred ceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 889999999999999997432 22 3678999999999985 67899999999999998
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=5.8e-30 Score=276.51 Aligned_cols=278 Identities=14% Similarity=0.187 Sum_probs=220.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCc-EEEEeCCC--CeEEEEeccC-CCCeEEEEECC--CCCEEEEEeCCCeEEEEecCCCC
Q 003279 554 KVESCHFSPDGKLLATGGHDKK-AVLWCTES--FTVKSTLEEH-TQWITDVRFSP--SLSRLATSSADRTVRVWDTENPD 627 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~-I~IWd~~t--~~~~~~l~~h-~~~I~~l~fsp--dg~~Latgs~Dg~I~IWDl~s~~ 627 (834)
.+++++|+|+|+.||+++.+.. |+.|+... ...+..+.+| ...|++++|+| ++.+|++|+.||+|+|||+....
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 98 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence 5788999999999999875543 45666543 2445677777 46899999998 57899999999999999987543
Q ss_pred ce-------eeeeccCCCCeEEEEEccCCCcEEEEE-eCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCE-EEEE
Q 003279 628 YS-------LRTFTGHSTTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR-ILAA 697 (834)
Q Consensus 628 ~~-------i~~~~~h~~~V~sl~fspdg~~llasg-s~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~-ll~~ 697 (834)
.. ...+..|.+.|.+++|++++..+++++ +.++.+.+|+..+++++..+.. ...+.+++|+|++.+ ++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 178 (325)
T d1pgua1 99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV 178 (325)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEE
T ss_pred ceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEe
Confidence 21 123456889999999999988766544 3577899999999998888774 567999999998876 6678
Q ss_pred EcCCeEEEEECCCCeEEEEEe---CCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003279 698 AIENYISILDVETQVCRLKLQ---GHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 772 (834)
Q Consensus 698 s~dg~I~iwDl~t~~~~~~l~---~h~~~I~sl~~spd-g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sva 772 (834)
+.|+.|++||+...+....+. .|...|.+++|+|+ +.+|++++ |+.|++||++++ +++..+..|...+..+.
T Consensus 179 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~---~~~~~l~~~~~~v~~~~ 255 (325)
T d1pgua1 179 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG---EFLKYIEDDQEPVQGGI 255 (325)
T ss_dssp ETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC---CEEEECCBTTBCCCSCE
T ss_pred ecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccc---cccccccccccccccce
Confidence 889999999999887766654 46778999999996 68888888 999999999988 67788888877776555
Q ss_pred Ee---CCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCC--CeEEEEEeCC-CCEEEEEecCCcEEEeC
Q 003279 773 FH---PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDK--LVSSLAASTV-NGMVASASHDKCVKIWK 834 (834)
Q Consensus 773 fs---pdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~--~V~~lafspd-g~~LaSgs~DG~I~IWd 834 (834)
|+ +++.+|++++.|+.|+|||+.+++++ .+..|.. .+..+++.+. +.+|++++.||.|+|||
T Consensus 256 ~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwd 324 (325)
T d1pgua1 256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324 (325)
T ss_dssp EEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred eeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEE
Confidence 55 78899999999999999999999887 3444433 3444444433 34889999999999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4e-30 Score=270.39 Aligned_cols=266 Identities=15% Similarity=0.215 Sum_probs=220.1
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
+.+++|.||.++|++++|+| |++|+.||+|++||+.++ ..+|...|.+++|+++ ..+++++.|++|++|+
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~ 73 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNG 73 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEEEETT
T ss_pred ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC-CeEEEEeecccccccc
Confidence 56889999999999999987 999999999999998764 3589999999999876 4689999999999999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCC-
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN- 701 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg- 701 (834)
+.... +...+.++++++++. ++++ +.++.+.+|+..+++.+..+.....+ .++++++..+++++.++
T Consensus 74 ~~~~~--------~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~ 141 (287)
T d1pgua2 74 ITKHE--------FGSQPKVASANNDGF-TAVL-TNDDDLLILQSFTGDIIKSVRLNSPG--SAVSLSQNYVAVGLEEGN 141 (287)
T ss_dssp EEEEE--------CSSCEEEEEECSSSE-EEEE-ETTSEEEEEETTTCCEEEEEECSSCE--EEEEECSSEEEEEETTTS
T ss_pred ccccc--------cccceeeeeeccCCc-eEEE-eecccceeeeccceeeeeecccccee--eeeeccCcceeeeccccc
Confidence 86421 234577888888764 4434 45778999999999998888865554 45677788888888875
Q ss_pred eEEEEECCCCeEEEEEe-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeE-EEeecCCCceEEEEEeCC--
Q 003279 702 YISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI-HELSCTGNKFHSCVFHPT-- 776 (834)
Q Consensus 702 ~I~iwDl~t~~~~~~l~-~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i-~~~~~~~~~I~svafspd-- 776 (834)
.|++|++........+. .|...+++++|+|++.+|++++ |+.|++||+.++ ... ..+..|...|.+++|+|.
T Consensus 142 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~---~~~~~~~~~h~~~v~~~~~~p~~~ 218 (287)
T d1pgua2 142 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR---EVKTSRWAFRTSKINAISWKPAEK 218 (287)
T ss_dssp CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEECCSCCCSSCEEEEEECCCC-
T ss_pred eeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccc---ccccccccccccccceeeeccccc
Confidence 79999998776666554 3778899999999999999998 999999999887 333 345678899999999875
Q ss_pred --------CCEEEEEEcCCeEEEEECCC-CeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 777 --------FPSLLVIGCYETLELWNMTE-NKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 777 --------g~~L~sgs~dg~I~Iwdl~~-~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+.+|++++.|+.|+|||+.+ .+.+ .+.+|...|++++|+|++ .|++++.||.|+|||
T Consensus 219 ~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~ 285 (287)
T d1pgua2 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN 285 (287)
T ss_dssp -----CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred ccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEE
Confidence 46799999999999999976 4444 556899999999999986 688999999999996
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=2.8e-28 Score=259.40 Aligned_cols=279 Identities=23% Similarity=0.371 Sum_probs=238.4
Q ss_pred CCCCceEEEEecCCCCCcccCCCcccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCC
Q 003279 475 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 554 (834)
Q Consensus 475 ~s~~~s~l~~s~~~~~~~~~~~~~~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~ 554 (834)
......++.|++++ .++++|+.|+.|++|..... ..+..+.+|...
T Consensus 54 H~~~I~~l~~s~~~---------------~~l~sgs~Dg~v~iWd~~~~-------------------~~~~~~~~~~~~ 99 (340)
T d1tbga_ 54 HLAKIYAMHWGTDS---------------RLLVSASQDGKLIIWDSYTT-------------------NKVHAIPLRSSW 99 (340)
T ss_dssp CSSCEEEEEECTTS---------------SEEEEEETTTEEEEEETTTT-------------------EEEEEEECSCSC
T ss_pred CCCCEEEEEECCCC---------------CEEEEEECCCceeeeecccc-------------------eeEEEEeccccc
Confidence 33466777777765 68999999999999965332 345677899999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCC----CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 630 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t----~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i 630 (834)
|.+++|+|++++|++|+.|+.|++|+... ......+.+|...+.+..+. .+..++....|..+..|+...... .
T Consensus 100 v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~ 177 (340)
T d1tbga_ 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQ-T 177 (340)
T ss_dssp EEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEE-E
T ss_pred EEeeEeeccceeeeeecccceeecccccccccccccceecccccccccccccc-cccccccccccccccccccccccc-c
Confidence 99999999999999999999999999764 34556778888777666655 456788888999999999886543 5
Q ss_pred eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003279 631 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVE 709 (834)
Q Consensus 631 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~ 709 (834)
.....+...+..+.+.+.+. ++++++.|+.|++||+++++++..+.. ...|.+++|+|++.+|++++.|+.|++||++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~ 256 (340)
T d1tbga_ 178 TTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256 (340)
T ss_dssp EEEECCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ccccccceeEeeeccccccc-eeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeec
Confidence 55666788899999988865 677899999999999999999988874 5679999999999999999999999999999
Q ss_pred CCeEEEEEe--CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003279 710 TQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 786 (834)
Q Consensus 710 t~~~~~~l~--~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d 786 (834)
....+..+. .+...|.+++|+|++.+|++++ |+.|++||+.++ +++..+.+|...|.+++|+|++.+|++++.|
T Consensus 257 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~D 333 (340)
T d1tbga_ 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333 (340)
T ss_dssp TTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred ccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEeCCCCEEEEEccC
Confidence 998877664 4667899999999999999999 999999999987 7888999999999999999999999999999
Q ss_pred CeEEEEE
Q 003279 787 ETLELWN 793 (834)
Q Consensus 787 g~I~Iwd 793 (834)
+.|+|||
T Consensus 334 g~v~iWd 340 (340)
T d1tbga_ 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred CEEEEeC
Confidence 9999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=6.3e-30 Score=270.23 Aligned_cols=291 Identities=12% Similarity=0.055 Sum_probs=219.4
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE---EEeccCCCCeEEEEECCC-CCEEEEEeCCCeE
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK---STLEEHTQWITDVRFSPS-LSRLATSSADRTV 618 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~---~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I 618 (834)
+.+....+|++.|++|+|+|++++||+|+.||+|+|||+++.... ....+|..+|.+++|+++ +.+|++|+.|+.|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence 356778899999999999999999999999999999998765432 233469999999999986 5589999999999
Q ss_pred EEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-------CCCeeEEEEecCC
Q 003279 619 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRL 691 (834)
Q Consensus 619 ~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-------~~~i~~l~~sp~g 691 (834)
++|++............+........+.++ ...+++++.++.+++||++.+........ ......+.+.+.+
T Consensus 82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (342)
T d1yfqa_ 82 LKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS 160 (342)
T ss_dssp EEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred eeeecccccccccccccccccccccccccc-cccccccccccccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence 999999866543333333344444444444 55777999999999999876443332221 2235567788888
Q ss_pred CEEEEEEcCCeEEEEECCCCeE---EEEEeCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCCCce------eEE-
Q 003279 692 GRILAAAIENYISILDVETQVC---RLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGE------CIH- 759 (834)
Q Consensus 692 ~~ll~~s~dg~I~iwDl~t~~~---~~~l~~h~~~I~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s~~~~~------~i~- 759 (834)
..+++++.|+.|++||+..... ......+...+.++.+.+ ++..+++++ |+.+.+|++....... ...
T Consensus 161 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~ 240 (342)
T d1yfqa_ 161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240 (342)
T ss_dssp SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeee
Confidence 9999999999999999986532 223334555666666654 667888888 9999999987542211 111
Q ss_pred -----EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 760 -----ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 760 -----~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
....+...+++++|+|++++|++|+.||.|+|||+.+++.+....+...+..++|+|++++|++|+.|+.+++|.
T Consensus 241 ~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~ 320 (342)
T d1yfqa_ 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCS
T ss_pred eeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEee
Confidence 122355678999999999999999999999999999999885554445667788899999999999998877663
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.9e-28 Score=263.03 Aligned_cols=245 Identities=16% Similarity=0.259 Sum_probs=202.0
Q ss_pred EEEecCC-CCCeEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCe--------EEEEeccCCCCeEEEEECCCCCEEEEEe
Q 003279 545 FQLIPAS-TSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFT--------VKSTLEEHTQWITDVRFSPSLSRLATSS 613 (834)
Q Consensus 545 ~~~l~gH-~~~V~sl~fSp--dg~~Lasgs~Dg~I~IWd~~t~~--------~~~~l~~h~~~I~~l~fspdg~~Latgs 613 (834)
+..+.+| ...|++++|+| ++.+||+|+.||+|+|||+..++ ....+..|.++|.+++|++++++|++++
T Consensus 55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 134 (325)
T d1pgua1 55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 134 (325)
T ss_dssp EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceee
Confidence 4556777 46799999998 67899999999999999986432 2234567899999999999999998876
Q ss_pred C--CCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec----CCCeeEEEE
Q 003279 614 A--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQMRF 687 (834)
Q Consensus 614 ~--Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~----~~~i~~l~~ 687 (834)
. ++.+++|+.+++. .+..+.+|...|.+++|+|++..++++++.|+.|++||+...+....+.. ...|.+++|
T Consensus 135 ~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~ 213 (325)
T d1pgua1 135 EGRDNFGVFISWDSGN-SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF 213 (325)
T ss_dssp CCSSCSEEEEETTTCC-EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEE
T ss_pred ccccceEEEEeecccc-cceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeee
Confidence 5 6789999998765 47788899999999999999988888999999999999998876665543 455999999
Q ss_pred ecC-CCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEc---CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee
Q 003279 688 QPR-LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN---TSGEYLASVS-DELVRVWSIGSGSKGECIHELS 762 (834)
Q Consensus 688 sp~-g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~s---pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~ 762 (834)
+|+ +.++++++.|+.|++||+++++.+..+.+|...+.++.|+ +++.+|++++ |+.|+|||++++ +++..+.
T Consensus 214 ~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~---~~~~~~~ 290 (325)
T d1pgua1 214 SPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS---KCVQKWT 290 (325)
T ss_dssp CSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT---EEEEEEE
T ss_pred ccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC---CEEEEEE
Confidence 996 5778889999999999999999999999888777655555 6889999988 999999999987 6777766
Q ss_pred cCCCc--eE--EEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 763 CTGNK--FH--SCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 763 ~~~~~--I~--svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
.+... +. ++.+.++ .+|++++.|+.|++||+
T Consensus 291 ~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 291 LDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL 325 (325)
T ss_dssp CCTTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred ecCCcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence 55543 33 3444443 47899999999999996
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=1.4e-28 Score=259.84 Aligned_cols=242 Identities=16% Similarity=0.137 Sum_probs=198.5
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 003279 584 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 663 (834)
Q Consensus 584 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 663 (834)
|+..+++.+|.+.|++|+|+|++++|++|+.||+|++||+.++.........|...|.+++|+|++. ++ +++.|+.|+
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~-~~~~d~~v~ 79 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LF-TVSWDDHLK 79 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EE-EEETTTEEE
T ss_pred CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-ee-cccceeeEE
Confidence 5678899999999999999999999999999999999999987653333357899999999999975 44 666799999
Q ss_pred EEECCCCce----eeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 003279 664 YWSINNGSC----AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 664 lwDl~s~~~----i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasg 739 (834)
+|++..... .....+...+.+++|++++..++ ++.++.+.+|+... ..... ....+.+++|+|++.+|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~-~~~~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~~~~~l~~g 154 (299)
T d1nr0a2 80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV-AACYKHIAIYSHGK--LTEVP--ISYNSSCVALSNDKQFVAVG 154 (299)
T ss_dssp EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEE-EEESSEEEEEETTE--EEEEE--CSSCEEEEEECTTSCEEEEE
T ss_pred EeccCCcccccccccccccccccccccccccccccc-cccccccccccccc--ccccc--cccccccccccccccccccc
Confidence 999865432 12223456788999999987555 45567899999653 22222 34568899999999999999
Q ss_pred e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE----EeccCCCCeEEEEE
Q 003279 740 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL----TLSAHDKLVSSLAA 814 (834)
Q Consensus 740 s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~----~l~~h~~~V~~laf 814 (834)
+ |+.|++||+++... .......|...|.+++|+|++.+|++++.++.|++||+.++... .+..|...|++++|
T Consensus 155 ~~dg~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 232 (299)
T d1nr0a2 155 GQDSKVHVYKLSGASV--SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW 232 (299)
T ss_dssp ETTSEEEEEEEETTEE--EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEE
T ss_pred cccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8 99999999987621 12234567889999999999999999999999999999887655 45578999999999
Q ss_pred eCCCCEEEEEecCCcEEEeC
Q 003279 815 STVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 815 spdg~~LaSgs~DG~I~IWd 834 (834)
+|++.+|++|+.||.|+|||
T Consensus 233 s~~~~~l~sgs~dg~i~iwd 252 (299)
T d1nr0a2 233 SPDNVRLATGSLDNSVIVWN 252 (299)
T ss_dssp CTTSSEEEEEETTSCEEEEE
T ss_pred cccccceEEEcCCCEEEEEE
Confidence 99999999999999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=4.2e-28 Score=268.51 Aligned_cols=286 Identities=15% Similarity=0.171 Sum_probs=214.1
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE------EEEeccCCCCeEEEEE------CC-CCCEE
Q 003279 543 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV------KSTLEEHTQWITDVRF------SP-SLSRL 609 (834)
Q Consensus 543 ~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~------~~~l~~h~~~I~~l~f------sp-dg~~L 609 (834)
......++|.+.|+++++++ ++|++|+.|++|+|||..+.+. ......|...+..+.+ +. +..++
T Consensus 5 ~~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (393)
T d1sq9a_ 5 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 82 (393)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred eeeecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEE
Confidence 34567789999999999874 6999999999999999765431 2223345544433332 11 24578
Q ss_pred EEEeCCCeEEEEecCCCCceee---------eeccCCCCeEEEEEccCC----CcEEEEEeCCCcEEEEECCCCc-----
Q 003279 610 ATSSADRTVRVWDTENPDYSLR---------TFTGHSTTVMSLDFHPSK----EDLLCSCDNNSEIRYWSINNGS----- 671 (834)
Q Consensus 610 atgs~Dg~I~IWDl~s~~~~i~---------~~~~h~~~V~sl~fspdg----~~llasgs~Dg~I~lwDl~s~~----- 671 (834)
++++.||.|++|++........ ....+...+..++|.++. ..++++++.||.|++|++....
T Consensus 83 ~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~ 162 (393)
T d1sq9a_ 83 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 162 (393)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred EEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence 8999999999999865432111 112244567788887764 3577889999999999975321
Q ss_pred -------ee---eEe----ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE------eCCCCCEEEEEEcC
Q 003279 672 -------CA---GVF----KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL------QGHKNQVHSVCWNT 731 (834)
Q Consensus 672 -------~i---~~~----~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l------~~h~~~I~sl~~sp 731 (834)
.. ... .....+.+++|+|++ +|++++.|+.|++||+.+++++..+ .+|...|.+++|+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 241 (393)
T d1sq9a_ 163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 241 (393)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred eeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc
Confidence 00 011 113448899999986 8899999999999999999887655 35889999999999
Q ss_pred CCCEEEEEe-CC---eEEEEEcCCCCCceeEEEe-------------ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 732 SGEYLASVS-DE---LVRVWSIGSGSKGECIHEL-------------SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 732 dg~~Lasgs-Dg---~I~IwDl~s~~~~~~i~~~-------------~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
+|++|++++ |+ .|++||+.++ .++..+ .+|...|++++|+|++++|++++.|++|+|||+
T Consensus 242 dg~~l~sgs~D~t~~~i~lwd~~~g---~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~ 318 (393)
T d1sq9a_ 242 QGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 318 (393)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred ccceeeeecCCCCcceeeecccccc---eeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEEC
Confidence 999999998 65 5999999987 344433 368899999999999999999999999999999
Q ss_pred CCCeEE-EeccCCCC---------------------eEEEEEeCCC----------CEEEEEecCCcEEEeC
Q 003279 795 TENKTL-TLSAHDKL---------------------VSSLAASTVN----------GMVASASHDKCVKIWK 834 (834)
Q Consensus 795 ~~~~~~-~l~~h~~~---------------------V~~lafspdg----------~~LaSgs~DG~I~IWd 834 (834)
.+++++ .+.+|... +.++.|.+.+ ..|++++.|+.|++|+
T Consensus 319 ~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~ 390 (393)
T d1sq9a_ 319 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 390 (393)
T ss_dssp TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred CCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence 999888 66677543 4566666543 3588999999999984
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=9.1e-25 Score=230.98 Aligned_cols=262 Identities=23% Similarity=0.361 Sum_probs=203.9
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
+++|++|+.|+.|++|..... ..+..+.+|.+.|.+++|+++ +|++|+.|+.+++|+..
T Consensus 27 g~~l~sgs~Dg~i~vWd~~~~-------------------~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~ 85 (342)
T d2ovrb2 27 GNRIVSGSDDNTLKVWSAVTG-------------------KCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAE 85 (342)
T ss_dssp TTEEEEEETTSCEEEEETTTC-------------------CEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETT
T ss_pred CCEEEEEeCCCeEEEEECCCC-------------------CEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccc
Confidence 368999999999999965432 246778899999999999975 99999999999999987
Q ss_pred CCeEEEEeccCCCCeEEE--------------------------------------EECCCCCEEEEEeCCCeEEEEecC
Q 003279 583 SFTVKSTLEEHTQWITDV--------------------------------------RFSPSLSRLATSSADRTVRVWDTE 624 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l--------------------------------------~fspdg~~Latgs~Dg~I~IWDl~ 624 (834)
..........+...+... .+......+++++.|+.|++||+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~ 165 (342)
T d2ovrb2 86 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE 165 (342)
T ss_dssp TTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGG
T ss_pred cccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecc
Confidence 765554443333322221 122234567888889999999988
Q ss_pred CCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC-CCeeEEEEecCCCEEEEEEcCCeE
Q 003279 625 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYI 703 (834)
Q Consensus 625 s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~-~~i~~l~~sp~g~~ll~~s~dg~I 703 (834)
... .+..+.+|...+.++.+. +. .+++++.||.|++||++.++++..+..+ ..+.++.++ +++|++++.|+.|
T Consensus 166 ~~~-~~~~~~~~~~~~~~~~~~--~~-~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i 239 (342)
T d2ovrb2 166 TET-CLHTLQGHTNRVYSLQFD--GI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTV 239 (342)
T ss_dssp GTE-EEEEECCCSSCEEEEEEC--SS-EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCE
T ss_pred cce-eeEEEcCcccccccccCC--CC-EEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEE
Confidence 654 467778888777777664 33 6779999999999999999988877753 446666555 5799999999999
Q ss_pred EEEECCCCeEEEEEeC---CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-----cCCCceEEEEEe
Q 003279 704 SILDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-----CTGNKFHSCVFH 774 (834)
Q Consensus 704 ~iwDl~t~~~~~~l~~---h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-----~~~~~I~svafs 774 (834)
++||+...+....+.. |...+.++.++ +.++++++ ||.|+|||++++ +++..+. .|...|++++|+
T Consensus 240 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg---~~i~~~~~~~~~~~~~~v~~v~~s 314 (342)
T d2ovrb2 240 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG---EFIRNLVTLESGGSGGVVWRIRAS 314 (342)
T ss_dssp EEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC---CEEEEEEECTTGGGTCEEEEEEEC
T ss_pred EEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCC---CEEEEEecccCCCCCCCEEEEEEC
Confidence 9999999888877765 55667777765 56888888 999999999998 5555543 466789999999
Q ss_pred CCCCEEEEEEcCC----eEEEEECCC
Q 003279 775 PTFPSLLVIGCYE----TLELWNMTE 796 (834)
Q Consensus 775 pdg~~L~sgs~dg----~I~Iwdl~~ 796 (834)
|++.+|++|+.|| .|++||++.
T Consensus 315 ~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 315 NTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp SSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 9999999999888 499999864
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.95 E-value=3.6e-27 Score=253.61 Aligned_cols=278 Identities=7% Similarity=-0.055 Sum_probs=217.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCC
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 627 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg--~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~ 627 (834)
+|...|.+++|+|||++|++++.+. .|++||.++++.. .+..|...|.+++|+|++++|++++.++.+++|++.+..
T Consensus 40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 118 (360)
T d1k32a3 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK 118 (360)
T ss_dssp SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccccc
Confidence 7999999999999999998877553 7999999887655 567899999999999999999999999999999999866
Q ss_pred ceeeeeccCCCCeEEEEEccCCCcEEEEEe---------CCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEE
Q 003279 628 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD---------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 698 (834)
Q Consensus 628 ~~i~~~~~h~~~V~sl~fspdg~~llasgs---------~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s 698 (834)
. ...+..|...+.+++|+|++..++++.. .++.+++||+.+++......+...+..+.|+|++++|++++
T Consensus 119 ~-~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s 197 (360)
T d1k32a3 119 P-TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLS 197 (360)
T ss_dssp E-EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred e-eeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEe
Confidence 4 6777888999999999999987765442 34579999999998888777778889999999999999999
Q ss_pred cCCeEEEEECCCCe-------EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CC---eEEEEEcCCCCCceeEEEeecCCCc
Q 003279 699 IENYISILDVETQV-------CRLKLQGHKNQVHSVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNK 767 (834)
Q Consensus 699 ~dg~I~iwDl~t~~-------~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg---~I~IwDl~s~~~~~~i~~~~~~~~~ 767 (834)
.++.+.+||..... ....+..|...+..+.|++++..++++. +. ..++|.+.... .....+..+...
T Consensus 198 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 275 (360)
T d1k32a3 198 YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP--GDYRMIIPLESS 275 (360)
T ss_dssp SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCC--BCEEEEEECSSE
T ss_pred CCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCc--CceeEeeecCCC
Confidence 99999999976543 2334445666666677888877666554 22 22344433221 122333444455
Q ss_pred eEEEEEeCCC---CEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 768 FHSCVFHPTF---PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 768 I~svafspdg---~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+..+.+...+ .+++.++.++.|++||+.+++...+ .+.|.+++|+|||++|++++.||.|++||
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~---~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d 342 (360)
T d1k32a3 276 ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV---KNNLTDLRLSADRKTVMVRKDDGKIYTFP 342 (360)
T ss_dssp EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE---EEEEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred ceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEe---cCCcCEEEECCCCCEEEEEECCCeEEEEE
Confidence 5555555544 3567777888999999999876544 35699999999999999999999999996
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.9e-24 Score=223.22 Aligned_cols=259 Identities=19% Similarity=0.365 Sum_probs=211.7
Q ss_pred CceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 003279 503 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 582 (834)
Q Consensus 503 ~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~ 582 (834)
+++|++|+.|++|++|..... ..+.++.+|.+.|++++| ++++|++|+.|+.|++|++.
T Consensus 25 ~~~l~sgs~Dg~i~vWd~~~~-------------------~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~ 83 (293)
T d1p22a2 25 DQKIVSGLRDNTIKIWDKNTL-------------------ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 83 (293)
T ss_dssp SSEEEEEESSSCEEEEESSSC-------------------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred CCEEEEEeCCCeEEEEECCCC-------------------cEEEEEecCCCCEeeeec--ccceeecccccccccccccc
Confidence 478999999999999965322 346788999999999987 57899999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc--eeeeeccCCCCeEEEEEccCCCcEEEEEeCCC
Q 003279 583 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 660 (834)
Q Consensus 583 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~--~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg 660 (834)
.+........+..... .+.+....++++..++.+.+||...... ....+..|...|.++.+.+. .+++++.|+
T Consensus 84 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~d~ 158 (293)
T d1p22a2 84 TGEMLNTLIHHCEAVL--HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDR 158 (293)
T ss_dssp SCCEEEEECCCCSCEE--EEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT---EEEEEETTS
T ss_pred cccccccccccccccc--cccccccceeecccccceeEeeccccccccccccccccccccccceeccc---ccccccCCC
Confidence 9988877765554443 3445667899999999999999986543 34556778889998888754 667888999
Q ss_pred cEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 003279 661 EIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 661 ~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasg 739 (834)
.|++||+++++.+..+.. ...+..+.++ +..+++++.|+.|++||+++...+..+.+|...+.+ +++++.+|+++
T Consensus 159 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg 234 (293)
T d1p22a2 159 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSG 234 (293)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEE
T ss_pred ceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEE
Confidence 999999999999888775 3445555554 578999999999999999999999999989888875 45678899998
Q ss_pred e-CCeEEEEEcCCCC------CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003279 740 S-DELVRVWSIGSGS------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 793 (834)
Q Consensus 740 s-Dg~I~IwDl~s~~------~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwd 793 (834)
+ |+.|++||+.... ...++..+..|...|.+++|+ +.+|++++.|++|+|||
T Consensus 235 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 235 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred cCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 8 9999999986432 234677888999999999995 56799999999999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.6e-25 Score=235.93 Aligned_cols=250 Identities=12% Similarity=0.091 Sum_probs=196.1
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCc--eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 003279 585 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 662 (834)
Q Consensus 585 ~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~--~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 662 (834)
+.+....+|.+.|++|+|+|++++||+|+.||+|+|||+..... .+....+|...|.+++|+|++..+|++|+.||.|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence 45667789999999999999999999999999999999986543 2344457999999999999888899999999999
Q ss_pred EEEECCCCceeeEeecC--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCC----eEEEEEeCC--CCCEEEEEEcCCCC
Q 003279 663 RYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVETQ----VCRLKLQGH--KNQVHSVCWNTSGE 734 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~~~--~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~----~~~~~l~~h--~~~I~sl~~spdg~ 734 (834)
++|++............ .......+.++...+++++.++.+++||++.. ........+ ......+.+.+++.
T Consensus 82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (342)
T d1yfqa_ 82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS 161 (342)
T ss_dssp EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence 99999987766665542 33455667778899999999999999998653 222233222 22345667778888
Q ss_pred EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEe-CCCCEEEEEEcCCeEEEEECCCCeEE------------
Q 003279 735 YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH-PTFPSLLVIGCYETLELWNMTENKTL------------ 800 (834)
Q Consensus 735 ~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafs-pdg~~L~sgs~dg~I~Iwdl~~~~~~------------ 800 (834)
.+++++ |+.|++||+..................+.++.+. .++..+++++.|+.+.+|++......
T Consensus 162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T d1yfqa_ 162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence 888888 9999999998876545555555555566666554 46678999999999999998654211
Q ss_pred ----EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 801 ----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 801 ----~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
....|...|++|+|+|++++||||+.||.|+|||
T Consensus 242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD 279 (342)
T d1yfqa_ 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN 279 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred eeccCCCcccccceeEEecCCccEEEEECCCCEEEEEE
Confidence 1235667899999999999999999999999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=4e-24 Score=236.16 Aligned_cols=264 Identities=17% Similarity=0.154 Sum_probs=195.5
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEE------cC-CCCEEEEEeCCC
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHF------SP-DGKLLATGGHDK 574 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~f------Sp-dg~~Lasgs~Dg 574 (834)
.+.+++++|.|++|++|......... ..........|...+..+.+ +. ++.++++++.||
T Consensus 23 ~~~~l~S~S~D~~iriWd~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg 89 (393)
T d1sq9a_ 23 CNSFTVSCSGDGYLKVWDNKLLDNEN-------------PKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 89 (393)
T ss_dssp CSSEEEEEETTSEEEEEESBCCTTCC-------------GGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred eCCEEEEEECCCeEEEEECCCCCCCc-------------ccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCC
Confidence 34789999999999999643322110 01111222344444333322 11 345788999999
Q ss_pred cEEEEeCCCCeEE-----EEe-----ccCCCCeEEEEECCC-----CCEEEEEeCCCeEEEEecCCCCc-----------
Q 003279 575 KAVLWCTESFTVK-----STL-----EEHTQWITDVRFSPS-----LSRLATSSADRTVRVWDTENPDY----------- 628 (834)
Q Consensus 575 ~I~IWd~~t~~~~-----~~l-----~~h~~~I~~l~fspd-----g~~Latgs~Dg~I~IWDl~s~~~----------- 628 (834)
.|++|++...... ... ..+...+..++|.++ +.++++++.||+|++|++.....
T Consensus 90 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 169 (393)
T d1sq9a_ 90 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP 169 (393)
T ss_dssp CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred cEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeecc
Confidence 9999986532211 111 234556788888775 46899999999999999853211
Q ss_pred ------eeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee-------cCCCeeEEEEecCCCEEE
Q 003279 629 ------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------CQSGATQMRFQPRLGRIL 695 (834)
Q Consensus 629 ------~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~-------~~~~i~~l~~sp~g~~ll 695 (834)
.......+...+.+++|+|++ +|++|+.||.|++||+.+++++..+. +...|.+++|+|++.+|+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~ 247 (393)
T d1sq9a_ 170 TLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247 (393)
T ss_dssp EEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEE
T ss_pred ceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceee
Confidence 111223455678999999986 78899999999999999998887665 346799999999999999
Q ss_pred EEEcCC---eEEEEECCCCeEEEEEe-------------CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeE
Q 003279 696 AAAIEN---YISILDVETQVCRLKLQ-------------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI 758 (834)
Q Consensus 696 ~~s~dg---~I~iwDl~t~~~~~~l~-------------~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i 758 (834)
+++.|+ .|++||++++.++..+. +|...|++++|+|++++|++++ |++|+|||+.++ .++
T Consensus 248 sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g---~~~ 324 (393)
T d1sq9a_ 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK---ERI 324 (393)
T ss_dssp EEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEE
T ss_pred eecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC---CEE
Confidence 999986 59999999998887764 7999999999999999999999 999999999998 889
Q ss_pred EEeecCCCceE----EEEEeCCCCEEEEE
Q 003279 759 HELSCTGNKFH----SCVFHPTFPSLLVI 783 (834)
Q Consensus 759 ~~~~~~~~~I~----svafspdg~~L~sg 783 (834)
..+.+|...|. .++|++++..++++
T Consensus 325 ~~l~gH~~~v~~~~~~~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 325 TTLNMHCDDIEIEEDILAVDEHGDSLAEP 353 (393)
T ss_dssp EEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred EEECCcCCcccCCccEEEECCCCCEEEEc
Confidence 99998887665 46788888766543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.93 E-value=1.6e-22 Score=211.51 Aligned_cols=259 Identities=12% Similarity=0.116 Sum_probs=215.7
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEE-EEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEc
Q 003279 568 ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 646 (834)
Q Consensus 568 asgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~La-tgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fs 646 (834)
++++.|++|.|||+++++.+.++... ..+..++|+|||++|+ +++.++.|++||+.++.. +..+..+. .+..++|+
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~-~~~~~~~~-~~~~~~~~ 82 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPAGS-SPQGVAVS 82 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSS-SEEEEEEC
T ss_pred EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce-eeeeeccc-cccccccc
Confidence 45678999999999999999988654 4578999999999875 566789999999998654 56666554 57899999
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEE
Q 003279 647 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVH 725 (834)
Q Consensus 647 pdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h~~~I~ 725 (834)
+++..+++++..++.+.+|+..+++....+.......++.|+|++..+++++. ++.+.+|+..+...+..+.. ...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 161 (301)
T d1l0qa2 83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSPK 161 (301)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSEE
T ss_pred cccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-CCCce
Confidence 99998998888899999999999999999998889999999999998876665 67899999999998888874 45688
Q ss_pred EEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEE
Q 003279 726 SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTL 800 (834)
Q Consensus 726 sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d---g~I~Iwdl~~~~~~ 800 (834)
++++++++.+++++. ++.+.+|+.... .....+. ....+..++|++++..+++++.+ +.|++||+.+++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~ 237 (301)
T d1l0qa2 162 GIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT 237 (301)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred EEEeeccccceeeecccccccccccccce---eeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeEE
Confidence 999999999888877 457888887765 4444433 34567889999999998877654 47999999999988
Q ss_pred EeccCCCCeEEEEEeCCCCEE-EEEecCCcEEEeC
Q 003279 801 TLSAHDKLVSSLAASTVNGMV-ASASHDKCVKIWK 834 (834)
Q Consensus 801 ~l~~h~~~V~~lafspdg~~L-aSgs~DG~I~IWd 834 (834)
....+...+.+++|+|||++| ++++.|+.|+|||
T Consensus 238 ~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D 272 (301)
T d1l0qa2 238 ARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVID 272 (301)
T ss_dssp EEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 655566779999999999976 5777899999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=1.4e-23 Score=219.96 Aligned_cols=249 Identities=11% Similarity=0.165 Sum_probs=196.9
Q ss_pred EEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 003279 506 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 585 (834)
Q Consensus 506 l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~ 585 (834)
+++|+.|++|++|.... ...+|...|.+++|++++ .+++++.|++|++|++...+
T Consensus 24 l~sgs~Dg~v~~Wd~~~------------------------~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~ 78 (287)
T d1pgua2 24 LISGSYDGRIMEWSSSS------------------------MHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE 78 (287)
T ss_dssp TEEEETTSCEEETTTTE------------------------EECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEE
T ss_pred EEEEeCCCeEEEEECCC------------------------CCCCCCCCEEEEEecCCC-eEEEEeeccccccccccccc
Confidence 68999999999994321 135899999999999765 67899999999999865421
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEE
Q 003279 586 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 665 (834)
Q Consensus 586 ~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lw 665 (834)
+...+.++++.+++..++++ .++.+.+|+..++.. +..+. +...+ .++++++..+++++..++.|++|
T Consensus 79 -------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~-~~~~~--~~~~~~~~~~~v~~~~~~~v~~~ 146 (287)
T d1pgua2 79 -------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDI-IKSVR-LNSPG--SAVSLSQNYVAVGLEEGNTIQVF 146 (287)
T ss_dssp -------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCE-EEEEE-CSSCE--EEEEECSSEEEEEETTTSCEEEE
T ss_pred -------cccceeeeeeccCCceEEEe-ecccceeeeccceee-eeecc-cccee--eeeeccCcceeeeccccceeeee
Confidence 33457889999887766665 566788999887654 44444 33334 45566666666555555689999
Q ss_pred ECCCCceeeEee--cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE-EEeCCCCCEEEEEEcCC----------
Q 003279 666 SINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL-KLQGHKNQVHSVCWNTS---------- 732 (834)
Q Consensus 666 Dl~s~~~i~~~~--~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~-~l~~h~~~I~sl~~spd---------- 732 (834)
++........+. +...+.+++|+|++.+|++++.||.|++||+.++.... .+.+|...|.+++|+|.
T Consensus 147 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 226 (287)
T d1pgua2 147 KLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE 226 (287)
T ss_dssp ETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCS
T ss_pred eccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCC
Confidence 998766555544 35679999999999999999999999999999987665 45679999999999874
Q ss_pred CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 733 GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 733 g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
+.+|++++ |+.|+|||+++.. ..+..+.+|...|.+++|+|++ .|++++.|+.|++|++
T Consensus 227 ~~~l~sgs~D~~i~iw~~~~~~--~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 227 EDLVATGSLDTNIFIYSVKRPM--KIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp CCEEEEEETTSCEEEEESSCTT--CCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred CCeeEeecCCCeEEEEECCCCC--eEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 46899988 9999999998753 5677778899999999999986 5899999999999986
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=7.2e-23 Score=229.00 Aligned_cols=312 Identities=9% Similarity=0.024 Sum_probs=226.1
Q ss_pred CCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 003279 502 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 581 (834)
Q Consensus 502 ~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~ 581 (834)
...++++.+.|+.|++|+.... ..+..+..|. .+..++|||||++|++++.|++|++||+
T Consensus 31 ~~~~~V~~~~dg~v~vwD~~t~-------------------~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~ 90 (426)
T d1hzua2 31 PNLFSVTLRDAGQIALVDGDSK-------------------KIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDL 90 (426)
T ss_dssp GGEEEEEETTTTEEEEEETTTC-------------------SEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred CeEEEEEEcCCCEEEEEECCCC-------------------cEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEc
Confidence 3456678888999999955322 3456677774 5999999999999999999999999999
Q ss_pred CCCeEEEE--e---ccCCCCeEEEEECCCCCEEEEE-eCCCeEEEEecCCCCceeeeeccCC-----------CCeEEEE
Q 003279 582 ESFTVKST--L---EEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHS-----------TTVMSLD 644 (834)
Q Consensus 582 ~t~~~~~~--l---~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~s~~~~i~~~~~h~-----------~~V~sl~ 644 (834)
.+++.... + .+|...+.+++|+|||++|+++ ..++.+++||..+... +..+..|. .....+.
T Consensus 91 ~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~ 169 (426)
T d1hzua2 91 WAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAII 169 (426)
T ss_dssp TSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEEE
T ss_pred cCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccce-eEEeeccCCCccceeecCCCceeEEE
Confidence 98875432 2 3566677888889999987554 5789999999998654 44444433 3445566
Q ss_pred EccCCCcEEEEEeCCCcEEEEECCCCce--eeEeecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCC-
Q 003279 645 FHPSKEDLLCSCDNNSEIRYWSINNGSC--AGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGH- 720 (834)
Q Consensus 645 fspdg~~llasgs~Dg~I~lwDl~s~~~--i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h- 720 (834)
+++++..++++....+.+.+++...... +..+.....+..+.|+|++++++++.. +..+.++|..+++.+..+...
T Consensus 170 ~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (426)
T d1hzua2 170 ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 249 (426)
T ss_dssp ECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSS
T ss_pred ECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCC
Confidence 6666666665555566677776665543 334455677889999999999888876 468999999999888776532
Q ss_pred -CCCEEEEEEcCCCC--EEEEEe--CCeEEEEEcCCCC----CceeEEEeecCCCceEEEEEeCCCCEEEE-------EE
Q 003279 721 -KNQVHSVCWNTSGE--YLASVS--DELVRVWSIGSGS----KGECIHELSCTGNKFHSCVFHPTFPSLLV-------IG 784 (834)
Q Consensus 721 -~~~I~sl~~spdg~--~Lasgs--Dg~I~IwDl~s~~----~~~~i~~~~~~~~~I~svafspdg~~L~s-------gs 784 (834)
......+.+...+. ..++.. |+.+.+|+..... ..+....+.+|...+..++|+|++++|++ +.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~ 329 (426)
T d1hzua2 250 TPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDAR 329 (426)
T ss_dssp CCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHH
T ss_pred cccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcc
Confidence 22233344433332 233222 7788898876542 13577788899999999999999999996 34
Q ss_pred cCCeEEEEECCCCeEE-E---------eccCCCCeEEEEEeCCCCEEEE-E----ecCCcEEEeC
Q 003279 785 CYETLELWNMTENKTL-T---------LSAHDKLVSSLAASTVNGMVAS-A----SHDKCVKIWK 834 (834)
Q Consensus 785 ~dg~I~Iwdl~~~~~~-~---------l~~h~~~V~~lafspdg~~LaS-g----s~DG~I~IWd 834 (834)
.+++|+|||+.+++.. . +..|...|.+++|||||++|+. + +.||.|+|||
T Consensus 330 ~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D 394 (426)
T d1hzua2 330 ISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 394 (426)
T ss_dssp HHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEE
T ss_pred cCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEE
Confidence 4679999999987654 2 2356677999999999997643 3 3578899997
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.91 E-value=2.2e-23 Score=234.52 Aligned_cols=307 Identities=10% Similarity=-0.003 Sum_probs=218.2
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 583 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t 583 (834)
-++++.+.|+.|.+|+.... ..+..+..|. .+..++|||||++|++++.|+.|++||+.+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~-------------------~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t 92 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTY-------------------EIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWM 92 (432)
T ss_dssp EEEEEETTTTEEEEEETTTC-------------------CEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred EEEEEEcCCCEEEEEECCCC-------------------cEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeC
Confidence 45688889999999955332 3455666664 599999999999999999999999999988
Q ss_pred CeE--EEEe---ccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEecCCCCceeeeecc-----------CCCCeEEEEEc
Q 003279 584 FTV--KSTL---EEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTG-----------HSTTVMSLDFH 646 (834)
Q Consensus 584 ~~~--~~~l---~~h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl~s~~~~i~~~~~-----------h~~~V~sl~fs 646 (834)
++. +..+ .+|.+.+.+..|+|||++| ++++.+++|+|||..+++. +..+.. +......+.++
T Consensus 93 ~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~s 171 (432)
T d1qksa2 93 KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILAS 171 (432)
T ss_dssp SSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEEEC
T ss_pred CCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccc-eeeeccCCccccceeccCCCceeEEEEC
Confidence 763 3333 3566667777888999986 6788899999999998764 433332 44567788999
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCceee--EeecCCCeeEEEEecCCCEEEEEEcC-CeEEEEECCCCeEEEEEeC----
Q 003279 647 PSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQSGATQMRFQPRLGRILAAAIE-NYISILDVETQVCRLKLQG---- 719 (834)
Q Consensus 647 pdg~~llasgs~Dg~I~lwDl~s~~~i~--~~~~~~~i~~l~~sp~g~~ll~~s~d-g~I~iwDl~t~~~~~~l~~---- 719 (834)
|++..++++...++.|.+||..+.+... .+.....+..+.|+|+++++++++.+ +.|.++|..+++.+..+..
T Consensus 172 ~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~ 251 (432)
T d1qksa2 172 HYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT 251 (432)
T ss_dssp SSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS
T ss_pred CCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccc
Confidence 9999888899999999999999877544 44556678999999999998888875 6899999999888776643
Q ss_pred -CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC----ceeEEEeecCCCce------------------------
Q 003279 720 -HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK----GECIHELSCTGNKF------------------------ 768 (834)
Q Consensus 720 -h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I------------------------ 768 (834)
|........+...+...++.. ++.|.+|+...... .+....+..+....
T Consensus 252 ~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~ 331 (432)
T d1qksa2 252 PHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEI 331 (432)
T ss_dssp BCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHH
T ss_pred cccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCe
Confidence 334445555655566666655 77888888755321 11122222111111
Q ss_pred -EEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEe-----cCCcEEEeC
Q 003279 769 -HSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-----HDKCVKIWK 834 (834)
Q Consensus 769 -~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs-----~DG~I~IWd 834 (834)
.++++ ||+..+++++.|+.+++|++.++. .+..|...|.+++|+|||++|+.+. .||.|+|||
T Consensus 332 ~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~--~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D 400 (432)
T d1qksa2 332 SGSVAV-FDIKAMTGDGSDPEFKTLPIAEWA--GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 400 (432)
T ss_dssp HTCEEE-EEGGGCCCSSSCCCEEEECHHHHH--TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred eeEEEE-EechhhcccccCCceEeccccccc--ccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEE
Confidence 11222 555555666666666666654332 2335777899999999999886554 468899997
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.90 E-value=2e-20 Score=195.25 Aligned_cols=266 Identities=15% Similarity=0.178 Sum_probs=212.6
Q ss_pred eccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeE
Q 003279 508 DGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTV 586 (834)
Q Consensus 508 ~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~La-sgs~Dg~I~IWd~~t~~~ 586 (834)
+++.|++|.+|+... +. .+..+... ..+..++|+|||++|+ +++.++.|++||+.+++.
T Consensus 7 ~~~~~~~v~v~D~~t----------------~~---~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~ 66 (301)
T d1l0qa2 7 ANSESDNISVIDVTS----------------NK---VTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66 (301)
T ss_dssp EETTTTEEEEEETTT----------------TE---EEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred EECCCCEEEEEECCC----------------Ce---EEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce
Confidence 466778888885432 22 23333333 3478999999999875 566789999999999999
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEE-EeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEE
Q 003279 587 KSTLEEHTQWITDVRFSPSLSRLAT-SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 665 (834)
Q Consensus 587 ~~~l~~h~~~I~~l~fspdg~~Lat-gs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lw 665 (834)
+..+..|.. +..++|++++.++++ +..++.+.+|+..++.. ...+. +...+.+++|+|++..+++++..++.+.+|
T Consensus 67 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~ 143 (301)
T d1l0qa2 67 IATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVI 143 (301)
T ss_dssp EEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred eeeeecccc-ccccccccccccccccccccceeeeccccccee-eeecc-ccccceEEEeecCCCeeeeeeccccceeee
Confidence 999987764 689999999886654 55678999999987653 44444 456688999999999888888889999999
Q ss_pred ECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcC-CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe----
Q 003279 666 SINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---- 740 (834)
Q Consensus 666 Dl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~d-g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs---- 740 (834)
+..+...+..+.....+..+.+++++..+++++.+ +.+.+|+.........+.. ...+..++|++++..++++.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~ 222 (301)
T d1l0qa2 144 NTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKY 222 (301)
T ss_dssp ETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSS
T ss_pred eccccceeeecccCCCceEEEeeccccceeeecccccccccccccceeeeecccc-cCCcceeeccccccccccccccce
Confidence 99999999999988889999999999999888876 6788888888877777664 45678899999999877654
Q ss_pred CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE-EEEcCCeEEEEECCCCeEEE
Q 003279 741 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL-VIGCYETLELWNMTENKTLT 801 (834)
Q Consensus 741 Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~-sgs~dg~I~Iwdl~~~~~~~ 801 (834)
++.|++||+.++ +.+..+.. ...+..++|+|||++|+ +++.++.|++||+++++++.
T Consensus 223 ~~~v~v~D~~t~---~~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~ 280 (301)
T d1l0qa2 223 FNTVSMIDTGTN---KITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITA 280 (301)
T ss_dssp CCEEEEEETTTT---EEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred eeeeeeeecCCC---eEEEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence 358999999987 66666654 45689999999999876 45568899999999998873
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.90 E-value=4.6e-23 Score=221.15 Aligned_cols=272 Identities=11% Similarity=0.017 Sum_probs=212.3
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC--eEEEEecCCCCceeee
Q 003279 556 ESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRT 632 (834)
Q Consensus 556 ~sl~fSp-dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg--~I~IWDl~s~~~~i~~ 632 (834)
..-.||| ||++||+++. |.|+|||++++..+.. .|...|.+++|+|||++|++++.+. .|++||+.++. ...
T Consensus 6 ~~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~--~~~ 80 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK--AEK 80 (360)
T ss_dssp GEEEEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC--EEE
T ss_pred hcccccCCCCCEEEEEEC-CeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc--EEE
Confidence 3467999 9999999874 7999999998877653 6999999999999999998877553 79999998755 567
Q ss_pred eccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEc----------CC
Q 003279 633 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI----------EN 701 (834)
Q Consensus 633 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~----------dg 701 (834)
+..|...|.+++|+|++. +|++++.++.+++|++.++++...+.. ...+.+++|+|++.+|+++.. ++
T Consensus 81 ~~~~~~~v~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~ 159 (360)
T d1k32a3 81 FEENLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159 (360)
T ss_dssp CCCCCCSEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEE
T ss_pred eeCCCceEEeeeeccccc-ccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccc
Confidence 788999999999999987 566888899999999999998887775 456889999999999987653 34
Q ss_pred eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC----ceeEEEeecCCCceEEEEEeCC
Q 003279 702 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPT 776 (834)
Q Consensus 702 ~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I~svafspd 776 (834)
.+++||+.+++..... .+...+.+++|+|+|++|++++ ++.+++||...... ......+..+...+..+.|+++
T Consensus 160 ~~~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 238 (360)
T d1k32a3 160 AIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPR 238 (360)
T ss_dssp EEEEEETTTTEEEECS-CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCG
T ss_pred ceeeeccccCceeeec-ccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCC
Confidence 6899999988765444 4777889999999999999988 88999999765421 1223334444555555677777
Q ss_pred CCEEEEEEcCC-----eEEEEECCCCeEEEeccCCCCeEEEEEeCCCC---EEEEEecCCcEEEeC
Q 003279 777 FPSLLVIGCYE-----TLELWNMTENKTLTLSAHDKLVSSLAASTVNG---MVASASHDKCVKIWK 834 (834)
Q Consensus 777 g~~L~sgs~dg-----~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~---~LaSgs~DG~I~IWd 834 (834)
+..++++..+. .+..+++..+....+..+.+.+..+.+...+. ++++++.|+.|++||
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 304 (360)
T d1k32a3 239 SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD 304 (360)
T ss_dssp GGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEE
T ss_pred cCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEE
Confidence 76665544332 35556667777666777777777777766554 678888999999996
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=1.2e-21 Score=207.52 Aligned_cols=262 Identities=11% Similarity=0.072 Sum_probs=205.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEecc--CCCCeEEEEECCCCCEEE-EEeCCCeEEEEecCCCCceeeeeccCC----
Q 003279 565 KLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHS---- 637 (834)
Q Consensus 565 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~--h~~~I~~l~fspdg~~La-tgs~Dg~I~IWDl~s~~~~i~~~~~h~---- 637 (834)
+||++++.|++|.|||+.+++.+..+.. +...+.+++|+|||++++ +++.++.|.+||+.+++. +..+..+.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~-~~~~~~~~~~~~ 80 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecCCCccc
Confidence 5899999999999999999999988864 445678999999999874 567899999999998764 44444332
Q ss_pred -CCeEEEEEccCCCcEEEEEe-----------CCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003279 638 -TTVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 705 (834)
Q Consensus 638 -~~V~sl~fspdg~~llasgs-----------~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~i 705 (834)
..+..++|+|+++.+++++. .+..+.+||..+++....+.....+..++|+|+++++++++ +.+.+
T Consensus 81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~ 158 (337)
T d1pbyb_ 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG--RDLHV 158 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES--SSEEE
T ss_pred ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc--CCcce
Confidence 34567999999987765543 46789999999999999999888899999999999999876 45788
Q ss_pred EECCCCeEEEEEeCCCCCEEEEEEcCCCCE------------------------EEEEe-CCeEEEEEcCCCCCceeEEE
Q 003279 706 LDVETQVCRLKLQGHKNQVHSVCWNTSGEY------------------------LASVS-DELVRVWSIGSGSKGECIHE 760 (834)
Q Consensus 706 wDl~t~~~~~~l~~h~~~I~sl~~spdg~~------------------------Lasgs-Dg~I~IwDl~s~~~~~~i~~ 760 (834)
||..+++....+..+... ....+.+++.. +.... ++.+.+||+.++. .....
T Consensus 159 ~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 235 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE--MAMRE 235 (337)
T ss_dssp EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC--EEEEE
T ss_pred eeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCc--EEEEE
Confidence 999999888877643321 11112222111 11111 3468899998873 23344
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 761 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 761 ~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+..+...+..+.+++++.++++. ++.|++||+.+++.+....+...+.+++|+|||++|++++.||.|+|||
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D 307 (337)
T d1pbyb_ 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred ecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 55677788899999999987765 4789999999999997777888899999999999999999999999997
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.88 E-value=1e-21 Score=208.93 Aligned_cols=269 Identities=10% Similarity=0.030 Sum_probs=202.5
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-cCCCCeEEEEECCCCCEEE-EEeCCCeEEEEecCCCCceeeeecc
Q 003279 558 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTG 635 (834)
Q Consensus 558 l~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~I~~l~fspdg~~La-tgs~Dg~I~IWDl~s~~~~i~~~~~ 635 (834)
++|++++++|++++.|+.|.|||+++++.+.++. .|...+.+++|+|||++++ +++.++.|++||+.+++. +..+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~-~~~~~~ 80 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHANL 80 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEES
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCee-eeeecc
Confidence 4789999999999999999999999999999886 4566789999999999875 555789999999998764 333322
Q ss_pred C------CCCeEEEEEccCCCcEEEEEe-----------CCCcEEEEECCCCceeeEee---cCCCeeEEEEecCCCEEE
Q 003279 636 H------STTVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRIL 695 (834)
Q Consensus 636 h------~~~V~sl~fspdg~~llasgs-----------~Dg~I~lwDl~s~~~i~~~~---~~~~i~~l~~sp~g~~ll 695 (834)
. ...+..++|+|||+.++++.. .++.+.+||..+++....+. ....+..+.+++++..++
T Consensus 81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (346)
T d1jmxb_ 81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV 160 (346)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE
Confidence 1 234668999999987765542 47789999998876554433 344566667777665444
Q ss_pred EEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEE--------------------------EEEe-CCeEEEEE
Q 003279 696 AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL--------------------------ASVS-DELVRVWS 748 (834)
Q Consensus 696 ~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~L--------------------------asgs-Dg~I~IwD 748 (834)
+ ++.+.+||+.+++.+..+..+. .+..+.++|++..+ +++. +..+.+||
T Consensus 161 ~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (346)
T d1jmxb_ 161 A---GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 236 (346)
T ss_dssp E---SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred e---CCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEE
Confidence 3 3678999999998888876442 23334444444322 2222 44678888
Q ss_pred cCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEecCC
Q 003279 749 IGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 828 (834)
Q Consensus 749 l~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs~DG 828 (834)
+.++. ........+...+..+.+++++.++++... +.|++||+.+++.+....+...+.+++|+|||++|++++.||
T Consensus 237 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~ 313 (346)
T d1jmxb_ 237 LKTGK--THTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFN 313 (346)
T ss_dssp TTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSS
T ss_pred CCCCc--eEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 87763 334445567788899999999988776654 579999999999987667777899999999999999999999
Q ss_pred cEEEeC
Q 003279 829 CVKIWK 834 (834)
Q Consensus 829 ~I~IWd 834 (834)
.|+|||
T Consensus 314 ~v~v~D 319 (346)
T d1jmxb_ 314 DLAVFN 319 (346)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999997
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.86 E-value=3.1e-20 Score=207.35 Aligned_cols=265 Identities=9% Similarity=-0.004 Sum_probs=198.3
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCce----eeeeccCCCCeE
Q 003279 566 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS----LRTFTGHSTTVM 641 (834)
Q Consensus 566 ~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~----i~~~~~h~~~V~ 641 (834)
++++++.||+|+|||+.+++.+.++..|. .+..++|+|||++|++++.|++|++||+.+++.. +....+|...+.
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~ 112 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES 112 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence 56778889999999999999999998775 5899999999999999999999999999987642 223345667778
Q ss_pred EEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec------------CCCeeEEEEecCCCEEEEEEcC-CeEEEEEC
Q 003279 642 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------------QSGATQMRFQPRLGRILAAAIE-NYISILDV 708 (834)
Q Consensus 642 sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~------------~~~i~~l~~sp~g~~ll~~s~d-g~I~iwDl 708 (834)
+++|+|||+++++++..++.+++||..++.++..+.. ......+.+++++..++....+ +.+.+++.
T Consensus 113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~ 192 (426)
T d1hzua2 113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY 192 (426)
T ss_dssp CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred eeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEe
Confidence 8889999998888888999999999999988766543 2334567777777777766654 56777776
Q ss_pred CCCeE-EEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecC--CCceEEEEEeCCCC-EEEE
Q 003279 709 ETQVC-RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFP-SLLV 782 (834)
Q Consensus 709 ~t~~~-~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~--~~~I~svafspdg~-~L~s 782 (834)
..... ......+...+..+.|+|++++++++. +..+.+|+..++ ..+...... ........+...+. .++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (426)
T d1hzua2 193 KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANFVHPKYGPVWS 269 (426)
T ss_dssp SSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTT---EEEEEEECSSCCCCSCCEEEEETTTEEEEE
T ss_pred ccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccc---cEEEEeccCCcccccceeeeecCCCCceEE
Confidence 65532 223335778899999999999998887 668999999987 444444322 22222333333322 2222
Q ss_pred --EEcCCeEEEEECCCC-------eEE-EeccCCCCeEEEEEeCCCCEEEE-------EecCCcEEEeC
Q 003279 783 --IGCYETLELWNMTEN-------KTL-TLSAHDKLVSSLAASTVNGMVAS-------ASHDKCVKIWK 834 (834)
Q Consensus 783 --gs~dg~I~Iwdl~~~-------~~~-~l~~h~~~V~~lafspdg~~LaS-------gs~DG~I~IWd 834 (834)
...++.+.+|+.... +.. .+.+|...+..++|+||+++|++ ++.|++|+|||
T Consensus 270 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd 338 (426)
T d1hzua2 270 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 338 (426)
T ss_dssp EECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEE
T ss_pred eccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEE
Confidence 234668888876543 333 67899999999999999999994 55688999996
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.85 E-value=7.2e-20 Score=193.67 Aligned_cols=268 Identities=12% Similarity=0.092 Sum_probs=200.2
Q ss_pred ceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEec--CCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEe
Q 003279 504 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP--ASTSKVESCHFSPDGKLLA-TGGHDKKAVLWC 580 (834)
Q Consensus 504 ~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~--gH~~~V~sl~fSpdg~~La-sgs~Dg~I~IWd 580 (834)
+++++++.|+.|.+|+.... ..+..+. .+...+.+++|+|||++|+ +++.++.|.+||
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~-------------------~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D 62 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKM-------------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT-------------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred eEEEEEcCCCEEEEEECCCC-------------------eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEE
Confidence 57888999999999966432 2233343 3455688999999999874 567899999999
Q ss_pred CCCCeEEEEeccCCC-----CeEEEEECCCCCEEEEEeC------------CCeEEEEecCCCCceeeeeccCCCCeEEE
Q 003279 581 TESFTVKSTLEEHTQ-----WITDVRFSPSLSRLATSSA------------DRTVRVWDTENPDYSLRTFTGHSTTVMSL 643 (834)
Q Consensus 581 ~~t~~~~~~l~~h~~-----~I~~l~fspdg~~Latgs~------------Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl 643 (834)
+.+++.+..+..+.. .+..++|+|+++++++++. +..+.+||..+... ...+. +...+.++
T Consensus 63 ~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~-~~~~~~~~ 140 (337)
T d1pbyb_ 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFE-APRQITML 140 (337)
T ss_dssp TTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEE-CCSSCCCE
T ss_pred CCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeE-EEecc-ccCCceEE
Confidence 999999988865543 4568999999999988763 67889999987653 44444 45668899
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCC------------------------EEEEEEc
Q 003279 644 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG------------------------RILAAAI 699 (834)
Q Consensus 644 ~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~------------------------~ll~~s~ 699 (834)
+|+|++..++ +++ +.+.+||..+++....+..........+.+++. .+.....
T Consensus 141 ~~s~dg~~l~-~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
T d1pbyb_ 141 AWARDGSKLY-GLG--RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY 217 (337)
T ss_dssp EECTTSSCEE-EES--SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred EEcCCCCEEE-EEc--CCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeeccc
Confidence 9999998666 443 457889999998887776533322222222211 1111122
Q ss_pred CCeEEEEECCCCeEEE-EEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003279 700 ENYISILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 778 (834)
Q Consensus 700 dg~I~iwDl~t~~~~~-~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~ 778 (834)
++.+.+||..++.... .+..+...+.++.+++++.+++++ ++.|++||+.++ +.+..+. +...+.+++|+|||+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~---~~~~~~~-~~~~~~~~~~s~dG~ 292 (337)
T d1pbyb_ 218 RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKN---ASIKRVP-LPHSYYSVNVSTDGS 292 (337)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTT---EEEEEEE-CSSCCCEEEECTTSC
T ss_pred CccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc-cccEEEEECCCC---cEEEEEc-CCCCEEEEEECCCCC
Confidence 3468999999886544 355577788999999999988755 688999999988 6666654 456788999999999
Q ss_pred EEEEEEcCCeEEEEECCCCeEE
Q 003279 779 SLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 779 ~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
+|++++.++.|++||..+++.+
T Consensus 293 ~l~v~~~~~~i~v~D~~t~~~v 314 (337)
T d1pbyb_ 293 TVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp EEEEESBSSEEEEEETTTCCEE
T ss_pred EEEEEeCCCcEEEEECCCCcEE
Confidence 9999999999999999998877
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.85 E-value=1.7e-19 Score=202.32 Aligned_cols=232 Identities=9% Similarity=-0.017 Sum_probs=172.8
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCce----eeeeccC
Q 003279 561 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS----LRTFTGH 636 (834)
Q Consensus 561 Spdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~----i~~~~~h 636 (834)
+++.-++++.+.||+|.|||..+++++..+..|. .+..++|+|||++|++++.|++|++||+.+.+.. +.....|
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~ 107 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA 107 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCC
Confidence 3344356888999999999999999999998774 6999999999999999999999999999876532 2233456
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec------------CCCeeEEEEecCCCEEEEEEc-CCeE
Q 003279 637 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------------QSGATQMRFQPRLGRILAAAI-ENYI 703 (834)
Q Consensus 637 ~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~------------~~~i~~l~~sp~g~~ll~~s~-dg~I 703 (834)
.+.+.+..|+|||++++++++.++.|++||..+++++..+.. ......+.+++++..++++.. ++.|
T Consensus 108 ~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i 187 (432)
T d1qksa2 108 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 187 (432)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred CCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeE
Confidence 667777788999998889999999999999999998876653 334667889999988766655 6899
Q ss_pred EEEECCCCeEEEEEe-CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeec-----CCCceEEEEEeC
Q 003279 704 SILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC-----TGNKFHSCVFHP 775 (834)
Q Consensus 704 ~iwDl~t~~~~~~l~-~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~-----~~~~I~svafsp 775 (834)
.+||..+.+...... .+...+.+++|+|+|+++++++ ++.+.++|..+. +.+..+.. +........+..
T Consensus 188 ~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~ 264 (432)
T d1qksa2 188 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG---KLVAIEDTGGQTPHPGRGANFVHPT 264 (432)
T ss_dssp EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSSBCCTTCEEEEETT
T ss_pred EEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccc---eEEEEeccCccccccCcccceecCC
Confidence 999998876443322 3566789999999999988887 668999999876 44433322 222333344443
Q ss_pred CCCEEEEEE-cCCeEEEEECCC
Q 003279 776 TFPSLLVIG-CYETLELWNMTE 796 (834)
Q Consensus 776 dg~~L~sgs-~dg~I~Iwdl~~ 796 (834)
.+...++.. .++.|.+|+...
T Consensus 265 ~g~~~~~~~lg~~~v~~~~~~~ 286 (432)
T d1qksa2 265 FGPVWATSHMGDDSVALIGTDP 286 (432)
T ss_dssp TEEEEEEEBSSSSEEEEEECCT
T ss_pred CCceecccccCCceEEeccccc
Confidence 443333332 255777776544
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.84 E-value=2.4e-19 Score=190.30 Aligned_cols=274 Identities=9% Similarity=0.049 Sum_probs=202.5
Q ss_pred ccCCCceEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEec-CCCCCeEEEEEcCCCCEEE-EEeCCCcE
Q 003279 499 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLA-TGGHDKKA 576 (834)
Q Consensus 499 ~~~~~~~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~-gH~~~V~sl~fSpdg~~La-sgs~Dg~I 576 (834)
+...++++++++.|+.|.+|+.... +.+.++. .|...+.+++|+|||++|+ +++.++.|
T Consensus 4 ~~~~~~~l~~~~~~~~v~v~D~~t~-------------------~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v 64 (346)
T d1jmxb_ 4 LKAGHEYMIVTNYPNNLHVVDVASD-------------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDI 64 (346)
T ss_dssp CCTTCEEEEEEETTTEEEEEETTTT-------------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEE
T ss_pred CCCCCcEEEEEcCCCEEEEEECCCC-------------------CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcE
Confidence 3455689999999999999965432 2344444 4556688999999999875 45578999
Q ss_pred EEEeCCCCeEEEEeccCC------CCeEEEEECCCCCEEEEEe------------CCCeEEEEecCCCCceeeeec--cC
Q 003279 577 VLWCTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSS------------ADRTVRVWDTENPDYSLRTFT--GH 636 (834)
Q Consensus 577 ~IWd~~t~~~~~~l~~h~------~~I~~l~fspdg~~Latgs------------~Dg~I~IWDl~s~~~~i~~~~--~h 636 (834)
++||+.+++.+..+.... ..+..++|+|||+++++++ .+..+.+||..++.. ...+. ..
T Consensus 65 ~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~ 143 (346)
T d1jmxb_ 65 YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-AKPVRTFPM 143 (346)
T ss_dssp EEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-BCCSEEEEC
T ss_pred EEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccccee-eeEEEeeec
Confidence 999999999987775332 2456899999999988775 467889999887553 21111 12
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEecCCCE-----------------------
Q 003279 637 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR----------------------- 693 (834)
Q Consensus 637 ~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~----------------------- 693 (834)
...+..+.+++++. ++++ +..+.+|++.+++.+..+..+.....+.++|++..
T Consensus 144 ~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (346)
T d1jmxb_ 144 PRQVYLMRAADDGS-LYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD 219 (346)
T ss_dssp CSSCCCEEECTTSC-EEEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred cCceEEEEecCCCE-EEEe---CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccC
Confidence 34456666776654 4433 35689999999998888776554444444444332
Q ss_pred ---EEEEEcCCeEEEEECCCCeEEE-EEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003279 694 ---ILAAAIENYISILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFH 769 (834)
Q Consensus 694 ---ll~~s~dg~I~iwDl~t~~~~~-~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 769 (834)
++++..+..+.+||+.++.... .+..|...+.++.+++++.+++...++.|++||+.++ +.+..+. ....+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~---~~~~~~~-~~~~~~ 295 (346)
T d1jmxb_ 220 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQR---KLIKAAN-LDHTYY 295 (346)
T ss_dssp ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTT---EEEEEEE-CSSCCC
T ss_pred ceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCCC---cEEEEEc-CCCCEE
Confidence 2223344568889998876544 4456888899999999999998888889999999987 6666655 345788
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 003279 770 SCVFHPTFPSLLVIGCYETLELWNMTENKTL 800 (834)
Q Consensus 770 svafspdg~~L~sgs~dg~I~Iwdl~~~~~~ 800 (834)
+++|+|||++|++++.++.|++||+.+++.+
T Consensus 296 ~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i 326 (346)
T d1jmxb_ 296 CVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326 (346)
T ss_dssp EEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEECccCCEE
Confidence 9999999999999999999999999999988
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.83 E-value=3.7e-18 Score=184.85 Aligned_cols=279 Identities=11% Similarity=0.028 Sum_probs=205.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEe-----CCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe----------
Q 003279 549 PASTSKVESCHFSPDGKLLATGG-----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS---------- 613 (834)
Q Consensus 549 ~gH~~~V~sl~fSpdg~~Lasgs-----~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs---------- 613 (834)
..|.+++.+++++|||+.+++.. .++.|++||.++++.+.++..+... .++|+|||++|++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence 46888999999999999987652 3467999999999999998776544 799999999999875
Q ss_pred CCCeEEEEecCCCCceeeeeccCCCCe-------EEEEEccCCCcEEEEE-eCCCcEEEEECCCCceeeEeecCCCeeEE
Q 003279 614 ADRTVRVWDTENPDYSLRTFTGHSTTV-------MSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGATQM 685 (834)
Q Consensus 614 ~Dg~I~IWDl~s~~~~i~~~~~h~~~V-------~sl~fspdg~~llasg-s~Dg~I~lwDl~s~~~i~~~~~~~~i~~l 685 (834)
.++.|.+||+.+++. +..+..+.... ..+.|+++++.+++.. ..++.+.+|+....+..... ....++
T Consensus 95 ~~~~v~v~D~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 170 (373)
T d2madh_ 95 RTDYVEVFDPVTFLP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL---SSPTCY 170 (373)
T ss_pred cceEEEEEECCCCcE-EEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe---ccceeE
Confidence 357899999998764 44444444332 4577888887665444 44678889998877655444 346788
Q ss_pred EEecCCCEE-EEEEcCCeEEEEECCCCeEEEEEeCC------CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeE
Q 003279 686 RFQPRLGRI-LAAAIENYISILDVETQVCRLKLQGH------KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECI 758 (834)
Q Consensus 686 ~~sp~g~~l-l~~s~dg~I~iwDl~t~~~~~~l~~h------~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i 758 (834)
.++|++..+ ++.+.|+.+.+||...+........+ ......+.+++++.+++.+.++.+++|+...... ..+
T Consensus 171 ~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~ 249 (373)
T d2madh_ 171 HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNK 249 (373)
T ss_pred EEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeE-EEE
Confidence 899998765 56677899999999988776655432 2234456677777777776699999999887632 111
Q ss_pred EEeecC----------CCceEEEEEeCCCCEEE----------EEEcCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCC
Q 003279 759 HELSCT----------GNKFHSCVFHPTFPSLL----------VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVN 818 (834)
Q Consensus 759 ~~~~~~----------~~~I~svafspdg~~L~----------sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg 818 (834)
...... ......+++++++..++ +...++.|.+||..+++.+....+...+.+++|+|||
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG 329 (373)
T d2madh_ 250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDG 329 (373)
T ss_pred EeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCC
Confidence 111111 12334456666666544 3445668999999999998777888899999999999
Q ss_pred C--EEEEEecCCcEEEeC
Q 003279 819 G--MVASASHDKCVKIWK 834 (834)
Q Consensus 819 ~--~LaSgs~DG~I~IWd 834 (834)
+ ++++++.|+.|+|||
T Consensus 330 ~~~l~vt~~~d~~v~v~D 347 (373)
T d2madh_ 330 GPDLYALSAGTEVLHIYD 347 (373)
T ss_pred CEEEEEEeCCCCeEEEEE
Confidence 8 457889999999997
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=5.9e-18 Score=179.22 Aligned_cols=269 Identities=10% Similarity=0.184 Sum_probs=193.0
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEE--EeccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEecCCCCceee--eeccCCCCe
Q 003279 566 LLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLR--TFTGHSTTV 640 (834)
Q Consensus 566 ~Lasgs~Dg~I~IWd~~t~~~~~--~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~s~~~~i~--~~~~h~~~V 640 (834)
.+++++.|++|+||++.+...+. ....|.+.|.+|+|+|||++|++++ .|+.|++|++........ ....+...+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence 45677799999999987543332 2236788999999999999986665 489999999986554222 223355668
Q ss_pred EEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEee---cCCCeeEEEEecCCCEEEEEEcC-CeEEEEECCCCeEEE-
Q 003279 641 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIE-NYISILDVETQVCRL- 715 (834)
Q Consensus 641 ~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~---~~~~i~~l~~sp~g~~ll~~s~d-g~I~iwDl~t~~~~~- 715 (834)
..++|+|||+.+++++..++.|.+|+........... ....+.++.++|+++++++++.+ ..|.+|+........
T Consensus 86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (333)
T d1ri6a_ 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 165 (333)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence 8899999999887776678899999988766554443 35568889999999998888864 679999987652221
Q ss_pred -----EEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCc-eeEEEee------cCCCceEEEEEeCCCCEEE
Q 003279 716 -----KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKG-ECIHELS------CTGNKFHSCVFHPTFPSLL 781 (834)
Q Consensus 716 -----~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~-~~i~~~~------~~~~~I~svafspdg~~L~ 781 (834)
...........++|++++.+++... .+...+|++...... ....... ........+++++++++++
T Consensus 166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~ 245 (333)
T d1ri6a_ 166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY 245 (333)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCcee
Confidence 1223455678999999999888776 668888887654321 1222221 1234567789999999877
Q ss_pred EEEc-CCeEEEEECCCCeEE----EeccCCCCeEEEEEeCCCCEEEEEe-cCCcEEEeC
Q 003279 782 VIGC-YETLELWNMTENKTL----TLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 834 (834)
Q Consensus 782 sgs~-dg~I~Iwdl~~~~~~----~l~~h~~~V~~lafspdg~~LaSgs-~DG~I~IWd 834 (834)
+... ++.+.+|++...... ....+...+.+++|+|||++|++++ .++.|+||+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~ 304 (333)
T d1ri6a_ 246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE 304 (333)
T ss_dssp EEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred eecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 7665 568999987654322 3334556788999999999887765 568899984
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=3.8e-17 Score=172.87 Aligned_cols=279 Identities=11% Similarity=0.100 Sum_probs=197.9
Q ss_pred eEEeccCCCCeEEeecCCCCCCCcccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCC
Q 003279 505 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTES 583 (834)
Q Consensus 505 ~l~~Gs~D~~v~~~~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~gH~~~V~sl~fSpdg~~Lasgs-~Dg~I~IWd~~t 583 (834)
+.++++.|+.|++|...... .+..+..+ .|.+.|.+|+|+|||++|++++ .|+.|++|++..
T Consensus 6 v~v~~~~~~~I~v~~~~~~~----------------~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~ 68 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEG----------------ALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTS----------------CEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEECCCCCcEEEEEEcCCC----------------CeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeC
Confidence 34677788999999654321 11223333 5778899999999999996665 489999999876
Q ss_pred CeEEEEe---ccCCCCeEEEEECCCCCEEEEEeC-CCeEEEEecCCCCce-eeeeccCCCCeEEEEEccCCCcEEEEEeC
Q 003279 584 FTVKSTL---EEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDN 658 (834)
Q Consensus 584 ~~~~~~l---~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~s~~~~-i~~~~~h~~~V~sl~fspdg~~llasgs~ 658 (834)
......+ ..+...+..++|+|||++|++++. ++.|.+|+....... ......+...+.++.++|++..+++....
T Consensus 69 ~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~ 148 (333)
T d1ri6a_ 69 DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK 148 (333)
T ss_dssp TTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG
T ss_pred CCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccc
Confidence 5332222 234456788999999999999885 678999998765432 23344566778899999999988877777
Q ss_pred CCcEEEEECCCCceeeEe-------ecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCC----eEEEEEeC------C
Q 003279 659 NSEIRYWSINNGSCAGVF-------KCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQ----VCRLKLQG------H 720 (834)
Q Consensus 659 Dg~I~lwDl~s~~~i~~~-------~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~----~~~~~l~~------h 720 (834)
+..|.+|+.......... ........++|++++..++.... .+...+++.... .....+.. .
T Consensus 149 ~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (333)
T d1ri6a_ 149 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD 228 (333)
T ss_dssp GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCS
T ss_pred cceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCc
Confidence 788999998765433221 12345678999999998877765 467788876542 22222221 2
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEE--ECC
Q 003279 721 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELW--NMT 795 (834)
Q Consensus 721 ~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~-dg~I~Iw--dl~ 795 (834)
......+++++++++++... ++.+.+|++........+.........+..++|+|||++|++++. ++.|.+| |..
T Consensus 229 ~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~ 308 (333)
T d1ri6a_ 229 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE 308 (333)
T ss_dssp CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETT
T ss_pred cccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECC
Confidence 34567889999999888776 779999999876544444444455667788999999999888765 4689998 556
Q ss_pred CCeEE
Q 003279 796 ENKTL 800 (834)
Q Consensus 796 ~~~~~ 800 (834)
+|++.
T Consensus 309 tG~l~ 313 (333)
T d1ri6a_ 309 QGLLH 313 (333)
T ss_dssp TTEEE
T ss_pred CCcEE
Confidence 67653
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.77 E-value=4.2e-17 Score=174.61 Aligned_cols=271 Identities=11% Similarity=0.039 Sum_probs=187.1
Q ss_pred eEEEEEcCCCCEEEEEe-----CCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe----------CCCeEE
Q 003279 555 VESCHFSPDGKLLATGG-----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVR 619 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs-----~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs----------~Dg~I~ 619 (834)
+.-.+.+|||+.+++.. .++.|.+||..+++.+.++..+..+ .++|+||+++|++++ .|+.|+
T Consensus 4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~ 81 (355)
T d2bbkh_ 4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVE 81 (355)
T ss_dssp CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence 34446689999988764 3567999999999999988766544 799999999887654 478999
Q ss_pred EEecCCCCceeeeeccC-------CCCeEEEEEccCCCcEEEEE-eCCCcEEEEECCCCceeeEeecCCCe--------e
Q 003279 620 VWDTENPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGA--------T 683 (834)
Q Consensus 620 IWDl~s~~~~i~~~~~h-------~~~V~sl~fspdg~~llasg-s~Dg~I~lwDl~s~~~i~~~~~~~~i--------~ 683 (834)
+||+.+++. +..+..+ ......++|++++..+++.. +.+..+.+|+..+++.+..+...... .
T Consensus 82 v~D~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
T d2bbkh_ 82 VFDPVTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT 160 (355)
T ss_dssp EECTTTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred EEECCCCCE-EEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcc
Confidence 999998764 3333222 22345689999998766543 45678999999999988877654322 2
Q ss_pred EEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe
Q 003279 684 QMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 761 (834)
Q Consensus 684 ~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~ 761 (834)
.+.+++++..+++... ++.+.+++..... ..+...+.+..+.+++..++.++ ++.+++|++..+.. ..+...
T Consensus 161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~ 234 (355)
T d2bbkh_ 161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAV 234 (355)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEECCCCS-----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCE
T ss_pred eEEEcCCCCEEEEEecCCCeEEEEeccccc-----ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE-EEEecc
Confidence 3344444444443322 2333344333221 12344455667888888888777 88999999987642 122211
Q ss_pred ecC----------CCceEEEEEeCCCCEEEEEEcC----------CeEEEEECCCCeEEEeccCCCCeEEEEEeCCCC--
Q 003279 762 SCT----------GNKFHSCVFHPTFPSLLVIGCY----------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-- 819 (834)
Q Consensus 762 ~~~----------~~~I~svafspdg~~L~sgs~d----------g~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~-- 819 (834)
..+ ......+++++++..+++...+ ..|.+||..+++.+....+...+.+++|+|||+
T Consensus 235 ~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~ 314 (355)
T d2bbkh_ 235 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPL 314 (355)
T ss_dssp ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCE
T ss_pred CCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeE
Confidence 111 1223457899999988877654 369999999999885555667799999999998
Q ss_pred EEEEEecCCcEEEeC
Q 003279 820 MVASASHDKCVKIWK 834 (834)
Q Consensus 820 ~LaSgs~DG~I~IWd 834 (834)
++++++.|+.|+|||
T Consensus 315 l~v~~~~d~~i~v~D 329 (355)
T d2bbkh_ 315 LYALSTGDKTLYIHD 329 (355)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEECCCCEEEEEE
Confidence 456777899999997
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.74 E-value=3.7e-15 Score=160.78 Aligned_cols=261 Identities=10% Similarity=0.009 Sum_probs=185.3
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeccCCCCe-------EEEEECCCCC
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHTQWI-------TDVRFSPSLS 607 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs----------~Dg~I~IWd~~t~~~~~~l~~h~~~I-------~~l~fspdg~ 607 (834)
+..+..+... .++|+|||++|++++ .++.|.|||..+++.+..+..+.... ..+.|+++++
T Consensus 60 ~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 137 (373)
T d2madh_ 60 LGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA 137 (373)
T ss_pred EEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCC
Confidence 3445555443 699999999999875 35789999999999998887666544 4467888888
Q ss_pred EEEEEe--CCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC-----C
Q 003279 608 RLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----S 680 (834)
Q Consensus 608 ~Latgs--~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~-----~ 680 (834)
.++... .++.+.+|+...... ..+...+.++.|+|+++.++++.+.|+.+.+||...+......... .
T Consensus 138 ~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (373)
T d2madh_ 138 DLLFFQFAAGPAVGLVVQGGSSD-----DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQ 212 (373)
T ss_pred cEEEEEEcCCCceEEeeccCCeE-----EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCc
Confidence 766554 356788888876442 2233456789999999999999999999999999988877655421 1
Q ss_pred C--eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE--EEeCCC----------CCEEEEEEcCCCCEEEE--------
Q 003279 681 G--ATQMRFQPRLGRILAAAIENYISILDVETQVCRL--KLQGHK----------NQVHSVCWNTSGEYLAS-------- 738 (834)
Q Consensus 681 ~--i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~--~l~~h~----------~~I~sl~~spdg~~Las-------- 738 (834)
. ...+.+.++ ..+++.+.++.+.+|+........ .+..+. .....+++++++..++.
T Consensus 213 ~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 291 (373)
T d2madh_ 213 NLLTQPAQANKS-GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW 291 (373)
T ss_pred cceeeeEEECCC-ceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceE
Confidence 1 223344444 456677778999999988764332 222121 22344566666665443
Q ss_pred --Ee-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE--EEEEcCCeEEEEECCCCeEE-EeccCCCCeEEE
Q 003279 739 --VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL--LVIGCYETLELWNMTENKTL-TLSAHDKLVSSL 812 (834)
Q Consensus 739 --gs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L--~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~l 812 (834)
.. ++.|.+||+.++ +.+..+. +...+..++|+|||+.+ ++++.|+.|++||+.+++.+ .+..+......|
T Consensus 292 ~~~~~~~~v~~~d~~t~---~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l 367 (373)
T d2madh_ 292 KLHAAAKEVTSVTGLVG---QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVL 367 (373)
T ss_pred EeecCCCeEEEEECCCC---cEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEE
Confidence 23 568999999888 5555544 45678899999999853 56778889999999999988 555688888888
Q ss_pred EEeCC
Q 003279 813 AASTV 817 (834)
Q Consensus 813 afspd 817 (834)
++..+
T Consensus 368 ~~~~~ 372 (373)
T d2madh_ 368 SVMNE 372 (373)
T ss_pred EEecC
Confidence 87654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.68 E-value=4.6e-15 Score=158.44 Aligned_cols=261 Identities=10% Similarity=0.086 Sum_probs=176.6
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeccCCC-------CeEEEEECCCCCE
Q 003279 546 QLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSPSLSR 608 (834)
Q Consensus 546 ~~l~gH~~~V~sl~fSpdg~~Lasgs----------~Dg~I~IWd~~t~~~~~~l~~h~~-------~I~~l~fspdg~~ 608 (834)
..+..+. +..++|||||++|++++ .|+.|++||+.+++.+..+..+.. ....++|++++++
T Consensus 42 ~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 119 (355)
T d2bbkh_ 42 GMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKT 119 (355)
T ss_dssp EEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSE
T ss_pred EEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCe
Confidence 3444443 34799999999887653 478999999999999887754332 2356899999999
Q ss_pred EEEEe--CCCeEEEEecCCCCceeeeeccCCC-------CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecC
Q 003279 609 LATSS--ADRTVRVWDTENPDYSLRTFTGHST-------TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 679 (834)
Q Consensus 609 Latgs--~Dg~I~IWDl~s~~~~i~~~~~h~~-------~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~ 679 (834)
+++++ .+..+.+|+..+... +..+..+.. ....+.+++++..+++....++.+.+++....... ..
T Consensus 120 ~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~----~~ 194 (355)
T d2bbkh_ 120 LLFYQFSPAPAVGVVDLEGKAF-KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE----DE 194 (355)
T ss_dssp EEEEECSSSCEEEEEETTTTEE-EEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT----TS
T ss_pred eEEecCCCCceeeeeecCCCcE-eeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccce----ec
Confidence 88775 456899999987653 444433221 22345556665555555555555555555433221 12
Q ss_pred CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE--EEeCCC----------CCEEEEEEcCCCCEEEEEe-C-----
Q 003279 680 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRL--KLQGHK----------NQVHSVCWNTSGEYLASVS-D----- 741 (834)
Q Consensus 680 ~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~--~l~~h~----------~~I~sl~~spdg~~Lasgs-D----- 741 (834)
..+....+.+++..++.++.++.+++|++..+.... ....+. .....+++++++..++... +
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~ 274 (355)
T d2bbkh_ 195 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR 274 (355)
T ss_dssp CBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC
T ss_pred ceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCcee
Confidence 234556788888999999999999999998875322 222221 2234588999999887765 2
Q ss_pred -----CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE--EEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEE
Q 003279 742 -----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS--LLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLA 813 (834)
Q Consensus 742 -----g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~--L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~la 813 (834)
..|.+||..++ +.+..+.. ...+.+++|+|||+. +++++.++.|++||+.+++.+ .+..+......+.
T Consensus 275 ~~~~~~~v~v~d~~t~---~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~ 350 (355)
T d2bbkh_ 275 HKTASRFVVVLDAKTG---ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVIT 350 (355)
T ss_dssp TTSCEEEEEEEETTTC---CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEE
T ss_pred ecCCCCeEEEEeCCCC---cEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEE
Confidence 36999999988 45555543 345789999999974 344556889999999999988 4556666666666
Q ss_pred EeCC
Q 003279 814 ASTV 817 (834)
Q Consensus 814 fspd 817 (834)
+..+
T Consensus 351 ~~d~ 354 (355)
T d2bbkh_ 351 TADM 354 (355)
T ss_dssp CCCC
T ss_pred eCCC
Confidence 5544
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.58 E-value=2.7e-14 Score=154.86 Aligned_cols=278 Identities=10% Similarity=-0.033 Sum_probs=189.6
Q ss_pred CCCCCeEEEEEcCCCCEEEE---EeCCC--cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe----------C
Q 003279 550 ASTSKVESCHFSPDGKLLAT---GGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------A 614 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Las---gs~Dg--~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs----------~ 614 (834)
.+.+....++..++++.... ...++ .|.+||..+++.+..+..+... .++|+||++.|++++ .
T Consensus 17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~ 94 (368)
T d1mdah_ 17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKR 94 (368)
T ss_dssp CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSE
T ss_pred ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCcccccccc
Confidence 34555666677888885332 23344 4777799999999988777654 589999999998765 3
Q ss_pred CCeEEEEecCCCCceeeeeccCC-------CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEE
Q 003279 615 DRTVRVWDTENPDYSLRTFTGHS-------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRF 687 (834)
Q Consensus 615 Dg~I~IWDl~s~~~~i~~~~~h~-------~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~ 687 (834)
|+.|.+||..+.+. +..+..+. .....++|+|||++++++...++.|.+||+.+++.+..+........ +
T Consensus 95 d~~v~v~D~~t~~~-~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~--~ 171 (368)
T d1mdah_ 95 TDYVEVFDPVTFLP-IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI--H 171 (368)
T ss_dssp EEEEEEECTTTCCE-EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC--E
T ss_pred CCeEEEEECCCCcE-eeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE--c
Confidence 67899999998764 33333222 22346899999998887777789999999999999888876443321 1
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEE------eCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEe
Q 003279 688 QPRLGRILAAAIENYISILDVETQVCRLKL------QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL 761 (834)
Q Consensus 688 sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l------~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~ 761 (834)
......+++.+.||.+.++++......... ..+...+..+.+.+++..+.. ..+.++++++..... ..+...
T Consensus 172 ~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~v~~~~~~~~~~-~~~~~~ 249 (368)
T d1mdah_ 172 PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA-VASSILQGDIPAAGA-TMKAAI 249 (368)
T ss_dssp EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC-BSSCCEEEECCSSCC-EEECCC
T ss_pred cCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe-cCCCEEEEeecCCce-EEEeec
Confidence 223356667777888888887765332222 123344556777777765543 355677777765422 111111
Q ss_pred ecC----------CCceEEEEEeCCCCEEEEEEcCC---------eEEEEECCCCeEEEeccCCCCeEEEEEeCCCC--E
Q 003279 762 SCT----------GNKFHSCVFHPTFPSLLVIGCYE---------TLELWNMTENKTLTLSAHDKLVSSLAASTVNG--M 820 (834)
Q Consensus 762 ~~~----------~~~I~svafspdg~~L~sgs~dg---------~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~--~ 820 (834)
... ......+++++++..+++...++ .|.+||..+++.+....+...+.+++|+|||+ +
T Consensus 250 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~l 329 (368)
T d1mdah_ 250 DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDN 329 (368)
T ss_dssp CSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEE
T ss_pred ccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEE
Confidence 110 11223578999998877764332 59999999999886666677899999999997 3
Q ss_pred EEEEecCCcEEEeC
Q 003279 821 VASASHDKCVKIWK 834 (834)
Q Consensus 821 LaSgs~DG~I~IWd 834 (834)
++++..|+.|+|||
T Consensus 330 y~s~~~~~~v~v~D 343 (368)
T d1mdah_ 330 YANSAGTEVLDIYD 343 (368)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEE
Confidence 56677899999997
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.55 E-value=4.5e-14 Score=156.19 Aligned_cols=258 Identities=12% Similarity=0.028 Sum_probs=185.6
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEecc------------------------------CCCCeEEEEECCCCCEEEEEe-CC
Q 003279 567 LATGGHDKKAVLWCTESFTVKSTLEE------------------------------HTQWITDVRFSPSLSRLATSS-AD 615 (834)
Q Consensus 567 Lasgs~Dg~I~IWd~~t~~~~~~l~~------------------------------h~~~I~~l~fspdg~~Latgs-~D 615 (834)
+++|+.+|.|+||++.+++.+.++.. |...+.+..++|||++|++.. .+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 56778899999999999999888642 222344555678999987665 67
Q ss_pred CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcE------------------EEEECCCCceeeEee
Q 003279 616 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI------------------RYWSINNGSCAGVFK 677 (834)
Q Consensus 616 g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I------------------~lwDl~s~~~i~~~~ 677 (834)
.+|.++|+.+.+........+...+..++|+|+++..++++..+..+ ..+|..+.+....+.
T Consensus 94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~ 173 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI 173 (441)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence 89999999987643333334667899999999988765555444333 558999998888888
Q ss_pred cCCCeeEEEEecCCCEEEEEEcCC-----------------------------------------eEEEEECCCCeEEEE
Q 003279 678 CQSGATQMRFQPRLGRILAAAIEN-----------------------------------------YISILDVETQVCRLK 716 (834)
Q Consensus 678 ~~~~i~~l~~sp~g~~ll~~s~dg-----------------------------------------~I~iwDl~t~~~~~~ 716 (834)
.......+.++|+|+++++++.+. .+.+++......+..
T Consensus 174 v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~ 253 (441)
T d1qnia2 174 VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRY 253 (441)
T ss_dssp ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEE
T ss_pred cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEE
Confidence 888899999999999999887542 233444444445555
Q ss_pred EeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC--------CceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003279 717 LQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS--------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 786 (834)
Q Consensus 717 l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~--------~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d 786 (834)
+.... ....+.++|||+++++++ +++|.|||+.+.. ...++.......-......|+++|..+.+...|
T Consensus 254 IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~d 332 (441)
T d1qnia2 254 IPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFID 332 (441)
T ss_dssp ECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTT
T ss_pred EeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEccccc
Confidence 55443 357899999999988876 8999999986521 012222222223345667899999877777788
Q ss_pred CeEEEEECCC----------CeEE-Ee-----ccCCCCeEEEEEeCCCCEEEEEe
Q 003279 787 ETLELWNMTE----------NKTL-TL-----SAHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 787 g~I~Iwdl~~----------~~~~-~l-----~~h~~~V~~lafspdg~~LaSgs 825 (834)
..|..|++.. ..++ ++ .+|...+.+.+++|||++|++++
T Consensus 333 s~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 333 SQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS 387 (441)
T ss_dssp TEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred ceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence 9999999741 1222 23 47777788888999999999994
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.50 E-value=1.3e-12 Score=146.27 Aligned_cols=269 Identities=14% Similarity=0.034 Sum_probs=160.4
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeC---------CCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCe
Q 003279 547 LIPASTSKVESCHFSPDGKLLATGGH---------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 617 (834)
Q Consensus 547 ~l~gH~~~V~sl~fSpdg~~Lasgs~---------Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~ 617 (834)
.+..|...|.++.|||||++||+++. ++.+.|||+.+++. ..+..|.+.+..+.|+|||++||.. .++.
T Consensus 56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~ 133 (470)
T d2bgra1 56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNND 133 (470)
T ss_dssp TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTE
T ss_pred hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-eccc
Confidence 44567788999999999999998853 56789999999875 4678899999999999999999996 5678
Q ss_pred EEEEecCCCCceeeeecc-----------------CCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC-------------
Q 003279 618 VRVWDTENPDYSLRTFTG-----------------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI------------- 667 (834)
Q Consensus 618 I~IWDl~s~~~~i~~~~~-----------------h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl------------- 667 (834)
+++|+..++........+ ..+....+.|+|||+.+++....+..+..|++
T Consensus 134 l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~ 213 (470)
T d2bgra1 134 IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKT 213 (470)
T ss_dssp EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEE
T ss_pred ceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCee
Confidence 999999876542222111 22334668899999977765544443443332
Q ss_pred ----------------------CCCceeeEee------------cCCCeeEEEEecCCCEEEEEEc-CC-----eEEEEE
Q 003279 668 ----------------------NNGSCAGVFK------------CQSGATQMRFQPRLGRILAAAI-EN-----YISILD 707 (834)
Q Consensus 668 ----------------------~s~~~i~~~~------------~~~~i~~l~~sp~g~~ll~~s~-dg-----~I~iwD 707 (834)
..+....... ....+..+.|.+++..++.... .+ .+..+|
T Consensus 214 ~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d 293 (470)
T d2bgra1 214 VRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD 293 (470)
T ss_dssp EEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEE
T ss_pred eeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEec
Confidence 2111110000 0011356777777765554432 21 244456
Q ss_pred CCCCeEEEEEe------CCCCCE-----EEEEEcCCC--CEEEEEe-CCe--EEEEEcCCCCCceeEEEeecCCCceEEE
Q 003279 708 VETQVCRLKLQ------GHKNQV-----HSVCWNTSG--EYLASVS-DEL--VRVWSIGSGSKGECIHELSCTGNKFHSC 771 (834)
Q Consensus 708 l~t~~~~~~l~------~h~~~I-----~sl~~spdg--~~Lasgs-Dg~--I~IwDl~s~~~~~~i~~~~~~~~~I~sv 771 (834)
..++....... .....+ ....|.+++ .+++... |+. |++|+...+ ....+..+...|..+
T Consensus 294 ~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~----~~~~lt~g~~~v~~~ 369 (470)
T d2bgra1 294 ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK----DCTFITKGTWEVIGI 369 (470)
T ss_dssp TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS----CCEESCCSSSCEEEE
T ss_pred CCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCC----ceeeeccCCeeEEEE
Confidence 66665433211 011111 122344443 3344444 664 555565443 233444445566665
Q ss_pred EEeCCCCEEEEE-EcCC------eEEEEECCCCeEE-E----eccCCCCeEEEEEeCCCCEEE
Q 003279 772 VFHPTFPSLLVI-GCYE------TLELWNMTENKTL-T----LSAHDKLVSSLAASTVNGMVA 822 (834)
Q Consensus 772 afspdg~~L~sg-s~dg------~I~Iwdl~~~~~~-~----l~~h~~~V~~lafspdg~~La 822 (834)
++++++.++.. +.++ .|+-.++..+... . +..|...+..++|||||++++
T Consensus 370 -~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~ 431 (470)
T d2bgra1 370 -EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQ 431 (470)
T ss_dssp -EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEE
T ss_pred -EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEE
Confidence 44455555443 3222 2555566654333 2 346788899999999999876
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.50 E-value=5.8e-13 Score=144.17 Aligned_cols=257 Identities=11% Similarity=0.015 Sum_probs=167.4
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeccCCC-------CeEEEEECCCCC
Q 003279 545 FQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSPSLS 607 (834)
Q Consensus 545 ~~~l~gH~~~V~sl~fSpdg~~Lasgs----------~Dg~I~IWd~~t~~~~~~l~~h~~-------~I~~l~fspdg~ 607 (834)
+..+.++... .++|+|||++|++++ .|+.|.+||..+++.+..+..+.. ....++|+|||+
T Consensus 59 ~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk 136 (368)
T d1mdah_ 59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA 136 (368)
T ss_dssp EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS
T ss_pred EEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCC
Confidence 3444455544 589999999988765 367899999999999888764432 234689999999
Q ss_pred EEEEEe-CCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-------C
Q 003279 608 RLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------Q 679 (834)
Q Consensus 608 ~Latgs-~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-------~ 679 (834)
+|+++. .++.|.+||+.+.+. ...+..+.... +.+.+...++..+.||.+.+|++........... .
T Consensus 137 ~l~va~~~~~~v~~~d~~~~~~-~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (368)
T d1mdah_ 137 CLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN 211 (368)
T ss_dssp CEEEEECSSSCEEEEEETTTEE-EEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSC
T ss_pred EEEEEeCCCCeEEEEECCCCcE-eEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccc
Confidence 998886 478999999998664 44444443322 2334455676777888888888876543332211 1
Q ss_pred CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEe--CCC----------CCEEEEEEcCCCCEEEEEe--C----
Q 003279 680 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHK----------NQVHSVCWNTSGEYLASVS--D---- 741 (834)
Q Consensus 680 ~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~--~h~----------~~I~sl~~spdg~~Lasgs--D---- 741 (834)
..+..+.+.+++..++ ...+.++++++.......... .+. .....+++++++..++... +
T Consensus 212 ~~~~~~~~~~~g~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~ 289 (368)
T d1mdah_ 212 CSSQAAQANYPGMLVW--AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC 289 (368)
T ss_dssp BCSCCEEETTTTEEEE--CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCT
T ss_pred cceeecccccCcEEEE--ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCcee
Confidence 2234556666644333 335667777766554332211 111 1223578899988776654 2
Q ss_pred ----CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE-EE-EEEcCCeEEEEECCCCeEEEeccCCCCeEEEEE
Q 003279 742 ----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS-LL-VIGCYETLELWNMTENKTLTLSAHDKLVSSLAA 814 (834)
Q Consensus 742 ----g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~-L~-sgs~dg~I~Iwdl~~~~~~~l~~h~~~V~~laf 814 (834)
..|.+||..++ +.+..+.. ...+..++|+|||+. ++ ++..++.|++||..+++.+....-......|++
T Consensus 290 ~~~~~~v~v~D~~t~---~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~l~~ 364 (368)
T d1mdah_ 290 LAAAENTSSVTASVG---QTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSV 364 (368)
T ss_dssp TSCEEEEEEEESSSC---CEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEEC
T ss_pred ecCCceEEEEECCCC---cEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCCCEEEE
Confidence 25999999988 45555443 356788999999974 43 445578999999999998854443444555544
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.36 E-value=1.8e-11 Score=136.73 Aligned_cols=138 Identities=16% Similarity=0.115 Sum_probs=109.9
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-----cCCCCeEEEEECCCCCEEEEEeC---------CCeEEEEe
Q 003279 557 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-----EHTQWITDVRFSPSLSRLATSSA---------DRTVRVWD 622 (834)
Q Consensus 557 sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-----~h~~~I~~l~fspdg~~Latgs~---------Dg~I~IWD 622 (834)
.+.|.+|+.++.. .|+.|.+||+.+++....+. .|...|.++.|+||+++|++++. ++.+.|||
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d 98 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence 4789999987764 57889999999998876554 45578999999999999998854 56789999
Q ss_pred cCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-------------------CCCee
Q 003279 623 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------------------QSGAT 683 (834)
Q Consensus 623 l~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-------------------~~~i~ 683 (834)
+.++. +..+..|...+..+.|+|||+.++++ .++.+++|+..+++....... .+...
T Consensus 99 ~~~~~--~~~l~~~~~~~~~~~~SPDG~~ia~~--~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~ 174 (470)
T d2bgra1 99 LNKRQ--LITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (470)
T ss_dssp TTTTE--ECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred CCCCc--ccccccCCccccccccccCcceeeEe--ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcc
Confidence 99764 56678889999999999999977764 377899999998876654321 12245
Q ss_pred EEEEecCCCEEEEEEcC
Q 003279 684 QMRFQPRLGRILAAAIE 700 (834)
Q Consensus 684 ~l~~sp~g~~ll~~s~d 700 (834)
.+.|+|||++|++...|
T Consensus 175 ~~~wSPDGk~ia~~~~d 191 (470)
T d2bgra1 175 ALWWSPNGTFLAYAQFN 191 (470)
T ss_dssp CEEECTTSSEEEEEEEE
T ss_pred ccEECCCCCccceeEec
Confidence 67899999999998765
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=7.4e-10 Score=113.09 Aligned_cols=233 Identities=13% Similarity=0.128 Sum_probs=161.8
Q ss_pred cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC---eEEEEecCCCCceeeeeccCCCCeEEEEEccCCCc
Q 003279 575 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 651 (834)
Q Consensus 575 ~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg---~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~ 651 (834)
.|+|.|.+.... ..+..+...+...+|||||+.||...... .+.+.+..... ...+..+...+....|+|++..
T Consensus 20 ~l~i~d~dG~~~-~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~ 96 (269)
T d2hqsa1 20 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQVASFPRHNGAPAFSPDGSK 96 (269)
T ss_dssp EEEEEETTSCSC-EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEEEECCSSCEEEEEECTTSSE
T ss_pred EEEEEcCCCCCc-EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc--eeEEeeeecccccceecCCCCe
Confidence 577778664433 34445667789999999999999776543 46666666544 4566667888899999999998
Q ss_pred EEEEEeCCCcEEE--EECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc-CC--eEEEEECCCCeEEEEEeCCCCCEEE
Q 003279 652 LLCSCDNNSEIRY--WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YISILDVETQVCRLKLQGHKNQVHS 726 (834)
Q Consensus 652 llasgs~Dg~I~l--wDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg--~I~iwDl~t~~~~~~l~~h~~~I~s 726 (834)
+++....++...+ +.....................+++++..++.... ++ .|.++++..+... .+..+......
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~ 175 (269)
T d2hqsa1 97 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQD 175 (269)
T ss_dssp EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEE
T ss_pred eeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccce-eeecccccccc
Confidence 8877765554433 33343444444444455566678888777766654 33 5777777766433 33345667788
Q ss_pred EEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeE
Q 003279 727 VCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT 799 (834)
Q Consensus 727 l~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg---~I~Iwdl~~~~~ 799 (834)
..|+|+++.++..+ .+ .|.+++...+ .. .............|+|||+.|+..+..+ .|+++++.++..
T Consensus 176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~----~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~ 250 (269)
T d2hqsa1 176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATG----GV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 250 (269)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTC----CE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred cccccccceeEEEeecCCceeeeEeecccc----cc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence 89999999988877 44 4555555443 12 2233455667889999999998766543 799999999988
Q ss_pred EEeccCCCCeEEEEEeC
Q 003279 800 LTLSAHDKLVSSLAAST 816 (834)
Q Consensus 800 ~~l~~h~~~V~~lafsp 816 (834)
..+....+.+...+|+|
T Consensus 251 ~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 251 ARLPATDGQVKFPAWSP 267 (269)
T ss_dssp EECCCSSSEEEEEEECC
T ss_pred EEEeCCCCcEEeEEeCC
Confidence 88888888899999998
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.33 E-value=2e-11 Score=134.65 Aligned_cols=248 Identities=10% Similarity=0.071 Sum_probs=169.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEec-cCCCCeEEEEECCCCC--EEEEEeCCC--------
Q 003279 549 PASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLS--RLATSSADR-------- 616 (834)
Q Consensus 549 ~gH~~~V~sl~fSpdg~~Lasgs-~Dg~I~IWd~~t~~~~~~l~-~h~~~I~~l~fspdg~--~Latgs~Dg-------- 616 (834)
..|.-.+.+..++|||++|++.. .++.|.++|++++++...+. .+...+..++|+|+++ |++..+.+.
T Consensus 68 d~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~ 147 (441)
T d1qnia2 68 DCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT 147 (441)
T ss_dssp CBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSS
T ss_pred cccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccc
Confidence 34666677777899999987665 67899999999999988765 3567899999999988 444444332
Q ss_pred ---------eEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeC-----------------------------
Q 003279 617 ---------TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN----------------------------- 658 (834)
Q Consensus 617 ---------~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~----------------------------- 658 (834)
.+..+|..+..... .+.. ...+..++|+|+|+.+++++..
T Consensus 148 ~~~~~~~~~~~~~iD~~t~~v~~-qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~ 225 (441)
T d1qnia2 148 DFSLDNSYTMFTAIDAETMDVAW-QVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAA 225 (441)
T ss_dssp CCCGGGEEEEEEEEETTTCSEEE-EEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHH
T ss_pred ccccccccceEEeecCccceeeE-EEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEE
Confidence 23456776654322 2222 3457889999999987776633
Q ss_pred -----------CCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCe-----------EEE
Q 003279 659 -----------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQV-----------CRL 715 (834)
Q Consensus 659 -----------Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s-~dg~I~iwDl~t~~-----------~~~ 715 (834)
++.+.+++....+.+..+........+.++|||+++++++ .+++|.+||+++.. ++.
T Consensus 226 ~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~ 305 (441)
T d1qnia2 226 VKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIV 305 (441)
T ss_dssp HHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEE
T ss_pred ecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEE
Confidence 3445555556666677777777788899999999987765 47999999986521 111
Q ss_pred EEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCC------CCC-ceeEEEe-----ecCCCceEEEEEeCCCCEEEE
Q 003279 716 KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS------GSK-GECIHEL-----SCTGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 716 ~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s------~~~-~~~i~~~-----~~~~~~I~svafspdg~~L~s 782 (834)
-.....-.....+|+++|..+.+.. |..|..|++.. +.. ...+..+ .+|...+.+.+++|||++|++
T Consensus 306 ~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s 385 (441)
T d1qnia2 306 AEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVV 385 (441)
T ss_dssp ECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEE
T ss_pred eecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEe
Confidence 1111122345678999998888777 99999999852 111 1233344 344455555678999999999
Q ss_pred EE---cCC----------eEEEEECCCCe
Q 003279 783 IG---CYE----------TLELWNMTENK 798 (834)
Q Consensus 783 gs---~dg----------~I~Iwdl~~~~ 798 (834)
++ .|. .-.++|+...+
T Consensus 386 ~~k~s~dr~~~~g~~~~~~~q~~~i~~~~ 414 (441)
T d1qnia2 386 LSKFSKDRFLPVGPLHPENDQLIDISGEE 414 (441)
T ss_dssp EESCCGGGSCCCSSSCCEEEEEEECSSSS
T ss_pred cCccccccCcCCCCCCCccceeEEecCCe
Confidence 94 343 45677776544
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.23 E-value=3.9e-09 Score=114.15 Aligned_cols=248 Identities=9% Similarity=0.012 Sum_probs=155.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEEe-ccCCCCeEEEEECCCCCEEE--EEe-CCCeEEEEecC
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTL-EEHTQWITDVRFSPSLSRLA--TSS-ADRTVRVWDTE 624 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t-~~~~~~l-~~h~~~I~~l~fspdg~~La--tgs-~Dg~I~IWDl~ 624 (834)
.+...+..|+|++++++|+++.. +.+..|.+.. +...... .........++++++++.++ ++. ..+.|..+.+.
T Consensus 37 ~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~ 115 (365)
T d1jofa_ 37 PQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp CTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred cCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEcc
Confidence 34455778999999999988765 5677776653 2332221 22234456788888887543 322 23556555443
Q ss_pred CCCcee----------------eeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC-ceee--Ee---ecCCCe
Q 003279 625 NPDYSL----------------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAG--VF---KCQSGA 682 (834)
Q Consensus 625 s~~~~i----------------~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~-~~i~--~~---~~~~~i 682 (834)
...... .........+.++.|+|+|++++++......|.+|+.... .... .. ......
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gP 195 (365)
T d1jofa_ 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred CCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCce
Confidence 211100 0111123357899999999988877666678988886543 2221 11 124678
Q ss_pred eEEEEecCCCEEEEEEc-CCeEEEEECCCCe--EEEE---Ee--------------CCCCCEEEEEEcCCCCEEEEEe--
Q 003279 683 TQMRFQPRLGRILAAAI-ENYISILDVETQV--CRLK---LQ--------------GHKNQVHSVCWNTSGEYLASVS-- 740 (834)
Q Consensus 683 ~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~--~~~~---l~--------------~h~~~I~sl~~spdg~~Lasgs-- 740 (834)
..++|+|+++++++... ++.|.+||+.... .+.. +. .+......+.++|||++|+++.
T Consensus 196 r~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~ 275 (365)
T d1jofa_ 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred EEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEccc
Confidence 89999999999887776 6899999987652 2222 11 0112356789999999998875
Q ss_pred CC-----eEEEEEcCCCCCcee---EEEeecCCCceEEEEEeC-CCCEEEEEEc-CCeEEEEECCCCe
Q 003279 741 DE-----LVRVWSIGSGSKGEC---IHELSCTGNKFHSCVFHP-TFPSLLVIGC-YETLELWNMTENK 798 (834)
Q Consensus 741 Dg-----~I~IwDl~s~~~~~~---i~~~~~~~~~I~svafsp-dg~~L~sgs~-dg~I~Iwdl~~~~ 798 (834)
+. .|..|++........ +............++++| +|++|+++.. ++.|.+|+++...
T Consensus 276 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred CCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 33 377788765432221 122223345567789998 7898888764 5699999876554
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.23 E-value=1.6e-09 Score=117.32 Aligned_cols=268 Identities=9% Similarity=0.100 Sum_probs=165.1
Q ss_pred EEEEEeC--CCcEEEE--eCCCCeEE--EEe-ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeee-eccCC
Q 003279 566 LLATGGH--DKKAVLW--CTESFTVK--STL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-FTGHS 637 (834)
Q Consensus 566 ~Lasgs~--Dg~I~IW--d~~t~~~~--~~l-~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~-~~~h~ 637 (834)
.|++|+. .+.|+++ |.++++.. ... ......+..|+|++++++|++++. +.+..|.+......... .....
T Consensus 4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~ 82 (365)
T d1jofa_ 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCC
Confidence 3566654 4566554 55555542 221 234555778999999999988765 56788877753322211 11223
Q ss_pred CCeEEEEEccCCCcEEEEEe--CCCcEEEEECCC-CceeeE-----------------eecCCCeeEEEEecCCCEEEEE
Q 003279 638 TTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINN-GSCAGV-----------------FKCQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs--~Dg~I~lwDl~s-~~~i~~-----------------~~~~~~i~~l~~sp~g~~ll~~ 697 (834)
.....++++++++.++++.. ..+.|..+.+.. +..... ......+.++.|+|++++++++
T Consensus 83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~ 162 (365)
T d1jofa_ 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEe
Confidence 44667788888875544432 234555544322 111111 0113357899999999999988
Q ss_pred EcC-CeEEEEECCCC-eE--EEEEe--CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcee--EEEeec----
Q 003279 698 AIE-NYISILDVETQ-VC--RLKLQ--GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGEC--IHELSC---- 763 (834)
Q Consensus 698 s~d-g~I~iwDl~t~-~~--~~~l~--~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~--i~~~~~---- 763 (834)
... +.|.+|+.... .. ...+. ........++|+|+++++++.. +++|.+|++........ +.....
T Consensus 163 d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~ 242 (365)
T d1jofa_ 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred eCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccccc
Confidence 764 68888876543 22 22222 2456789999999999988777 78999999977543221 111111
Q ss_pred ----------CCCceEEEEEeCCCCEEEEEEcC------CeEEEEECCCCeEE-------EeccCCCCeEEEEEeC-CCC
Q 003279 764 ----------TGNKFHSCVFHPTFPSLLVIGCY------ETLELWNMTENKTL-------TLSAHDKLVSSLAAST-VNG 819 (834)
Q Consensus 764 ----------~~~~I~svafspdg~~L~sgs~d------g~I~Iwdl~~~~~~-------~l~~h~~~V~~lafsp-dg~ 819 (834)
.......+.++|+|++|+++... ..|..|++.....+ ..........+++++| +|+
T Consensus 243 ~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~ 322 (365)
T d1jofa_ 243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE 322 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT
T ss_pred ccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCC
Confidence 11234678999999999887542 14777777543222 1123345678899998 789
Q ss_pred EEEEEe-cCCcEEEeC
Q 003279 820 MVASAS-HDKCVKIWK 834 (834)
Q Consensus 820 ~LaSgs-~DG~I~IWd 834 (834)
+|++++ .++.|.||+
T Consensus 323 ~l~va~~~s~~v~v~~ 338 (365)
T d1jofa_ 323 WMAITDDQEGWLEIYR 338 (365)
T ss_dssp EEEEECSSSCEEEEEE
T ss_pred EEEEEeCCCCeEEEEE
Confidence 777664 678899984
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=9.7e-09 Score=104.52 Aligned_cols=220 Identities=15% Similarity=0.151 Sum_probs=150.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC-CCeEEEEecCC
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTEN 625 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg---~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~s 625 (834)
.+...+...+|||||+.||...... .+.+.+...+... .+..+...+.+..|+|+++.++.... ++...++....
T Consensus 36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~ 114 (269)
T d2hqsa1 36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 114 (269)
T ss_dssp EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccceeeccc
Confidence 4456688999999999999876543 4677777766554 44457788899999999999887664 33333333332
Q ss_pred CCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC--cEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCC--
Q 003279 626 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN-- 701 (834)
Q Consensus 626 ~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg--~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg-- 701 (834)
...................+++++..++++...++ .|.++++..+................|+|++..++..+.++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~ 194 (269)
T d2hqsa1 115 ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQ 194 (269)
T ss_dssp TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSC
T ss_pred ccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCc
Confidence 22223444445555666778888887777776666 46666776665554444455677889999999999888764
Q ss_pred -eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--C--CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC
Q 003279 702 -YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D--ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 776 (834)
Q Consensus 702 -~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--D--g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspd 776 (834)
.|.++|...+... +..+........|+|||+.|+..+ . ..|+++++..+ ....+......+...+|+|-
T Consensus 195 ~~i~~~~~~~~~~~--~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~----~~~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 195 QHIAKQDLATGGVQ--VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR----FKARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp EEEEEEETTTCCEE--ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC----CEEECCCSSSEEEEEEECCC
T ss_pred eeeeEeecccccce--EeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC----CEEEEeCCCCcEEeEEeCCC
Confidence 5666676665543 333555677889999999987766 2 37899999875 23345555677888899984
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.12 E-value=1.3e-08 Score=106.66 Aligned_cols=235 Identities=10% Similarity=0.067 Sum_probs=159.6
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEec
Q 003279 544 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 623 (834)
Q Consensus 544 ~~~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 623 (834)
.+..+...+ .+..++++|||+++++...+++|+.|+... + ...+......+.+++|.++|+++++...++.+.+|+.
T Consensus 20 v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~ 96 (302)
T d2p4oa1 20 IITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSL 96 (302)
T ss_dssp EEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred EEEECCCCC-CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEe
Confidence 344554333 588999999999999999899999998654 3 3334456678999999999999999888888988887
Q ss_pred CCCCceeeee--ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-----------CCCeeEEEEecC
Q 003279 624 ENPDYSLRTF--TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----------QSGATQMRFQPR 690 (834)
Q Consensus 624 ~s~~~~i~~~--~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-----------~~~i~~l~~sp~ 690 (834)
.........+ .........+++.+++. ++++.+.++.|..+|...+........ ......+.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~-- 173 (302)
T d2p4oa1 97 VKSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF-- 173 (302)
T ss_dssp ECTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--
T ss_pred cccccceeeccccCCccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--
Confidence 6544333332 23456688999999975 666777788999999887654432221 1123455554
Q ss_pred CCEEEEE-EcCCeEEEEECCCCeEE---EEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC
Q 003279 691 LGRILAA-AIENYISILDVETQVCR---LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 765 (834)
Q Consensus 691 g~~ll~~-s~dg~I~iwDl~t~~~~---~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~ 765 (834)
+..++++ ...+.|+.++....... ..+. .......++|+++|.++++.. ++.|..|+.... ...+.......
T Consensus 174 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~--~~~~~~~~~~~ 250 (302)
T d2p4oa1 174 GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS--TTIIAQAEQGV 250 (302)
T ss_dssp TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC--EEEEECGGGTC
T ss_pred CCceeeecCCCCeEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC--EEEEEecCCCC
Confidence 3455444 45688999987654211 1111 233456799999999877766 888888876543 12333334445
Q ss_pred CceEEEEE---eCCCCEEEEEEcCC
Q 003279 766 NKFHSCVF---HPTFPSLLVIGCYE 787 (834)
Q Consensus 766 ~~I~svaf---spdg~~L~sgs~dg 787 (834)
...++++| .+|++.|++++..+
T Consensus 251 ~~pt~vafg~~~~D~~~Lyvtt~~g 275 (302)
T d2p4oa1 251 IGSTAVAFGQTEGDCTAIYVVTNGG 275 (302)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCceEEEEcCCCCCCCEEEEECCCC
Confidence 66899999 67888888776543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.11 E-value=1.5e-08 Score=106.28 Aligned_cols=238 Identities=9% Similarity=0.027 Sum_probs=161.2
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCc
Q 003279 582 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 661 (834)
Q Consensus 582 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 661 (834)
...+.+..+... ..+..+++.|||+++++...+++|+.|+.... ...+......+.+++|+++++ ++++...++.
T Consensus 16 ~~~~v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~---~~~~~~~~~~~~gla~~~dG~-l~v~~~~~~~ 90 (302)
T d2p4oa1 16 APAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN---QQIHATVEGKVSGLAFTSNGD-LVATGWNADS 90 (302)
T ss_dssp CCEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC---EEEEEECSSEEEEEEECTTSC-EEEEEECTTS
T ss_pred CcccEEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCC---EEEEEcCCCCcceEEEcCCCC-eEEEecCCce
Confidence 344555556432 36889999999999999999999988886642 344555667899999999987 6666666777
Q ss_pred EEEEECCCC--ceeeEee--cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC----------CCCCEEEE
Q 003279 662 IRYWSINNG--SCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG----------HKNQVHSV 727 (834)
Q Consensus 662 I~lwDl~s~--~~i~~~~--~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~----------h~~~I~sl 727 (834)
+.+|+.... ....... .......+.+.+++..+++...++.|..+|...+........ .......+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi 170 (302)
T d2p4oa1 91 IPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL 170 (302)
T ss_dssp CEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE
T ss_pred EEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccc
Confidence 887776543 2222222 244578899999988777777789999999988754433321 11245666
Q ss_pred EEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE--ec
Q 003279 728 CWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT--LS 803 (834)
Q Consensus 728 ~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~--l~ 803 (834)
.++. ..++.+. .+.|+.+++...........+ ........++++++|.++++...++.|..|+........ ..
T Consensus 171 ~~~~--~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~ 247 (302)
T d2p4oa1 171 KRFG--NFLYVSNTEKMLLLRIPVDSTDKPGEPEIF-VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAE 247 (302)
T ss_dssp EEET--TEEEEEETTTTEEEEEEBCTTSCBCCCEEE-EESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGG
T ss_pred cccC--CceeeecCCCCeEEeccccccccccccccc-cCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecC
Confidence 6653 4444444 789999998765332222222 223445679999999977777778899999877654332 23
Q ss_pred cCCCCeEEEEE---eCCCCEEEEEecC
Q 003279 804 AHDKLVSSLAA---STVNGMVASASHD 827 (834)
Q Consensus 804 ~h~~~V~~laf---spdg~~LaSgs~D 827 (834)
..-..+++++| ++|++.|+.++..
T Consensus 248 ~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 248 QGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 34456899999 6788877766544
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.11 E-value=9.2e-09 Score=105.47 Aligned_cols=233 Identities=10% Similarity=-0.044 Sum_probs=155.0
Q ss_pred CeEEEEECCCCCEEEEEe-CCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceee
Q 003279 596 WITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 674 (834)
Q Consensus 596 ~I~~l~fspdg~~Latgs-~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~ 674 (834)
.-.+|++.++|.++++.. ..+.|..++............ -......+++++++. ++++....+.|++++-.+...+.
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~p~gvav~~~g~-i~v~d~~~~~i~~~~~~~~~~~~ 92 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFN-GLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTVL 92 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCC-SCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCCEEC
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccC-CccCceEEEEcCCCC-EEEeeeeeceeeeeeeccceeee
Confidence 458999999999776654 456777777765443222222 224467889999875 66666666667766666555554
Q ss_pred EeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC
Q 003279 675 VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 753 (834)
Q Consensus 675 ~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~ 753 (834)
..........+++.++++.+++-..+..+..++..................+++++++++++++.. ++.|..+|.....
T Consensus 93 ~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~ 172 (260)
T d1rwia_ 93 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN 172 (260)
T ss_dssp CCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred eeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccce
Confidence 444446688999999988776665667788888766543322222234567899999999877766 7789999877642
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEec-cCCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 003279 754 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHDKCVKI 832 (834)
Q Consensus 754 ~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~-~h~~~V~~lafspdg~~LaSgs~DG~I~I 832 (834)
..............++++++|..+++....+.|..++........+. ..-.....|+++++|.++++-..+++|+.
T Consensus 173 ---~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~ 249 (260)
T d1rwia_ 173 ---QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVK 249 (260)
T ss_dssp ---EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred ---eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEE
Confidence 22222234456788999999986666666778888887665443332 33356789999999998887777777765
Q ss_pred e
Q 003279 833 W 833 (834)
Q Consensus 833 W 833 (834)
+
T Consensus 250 i 250 (260)
T d1rwia_ 250 L 250 (260)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.06 E-value=7.8e-08 Score=101.46 Aligned_cols=238 Identities=10% Similarity=0.086 Sum_probs=155.9
Q ss_pred CeEEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCeEEEEeccC----CCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 003279 554 KVESCHFSPDGKLLATGGH-------DKKAVLWCTESFTVKSTLEEH----TQWITDVRFSPSLSRLATSSADRTVRVWD 622 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~-------Dg~I~IWd~~t~~~~~~l~~h----~~~I~~l~fspdg~~Latgs~Dg~I~IWD 622 (834)
....++|.++|+++++... ++.|..||.+++......... ...-..++|.+++..|+++.....|..++
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~ 98 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ 98 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence 3667899999998776432 467999998887665443221 22356899999999888888878899999
Q ss_pred cCCCCceeeeeccCC---CCeEEEEEccCCCcEEEEEeC---------------CCcEEEEECCCCceeeEeecCCCeeE
Q 003279 623 TENPDYSLRTFTGHS---TTVMSLDFHPSKEDLLCSCDN---------------NSEIRYWSINNGSCAGVFKCQSGATQ 684 (834)
Q Consensus 623 l~s~~~~i~~~~~h~---~~V~sl~fspdg~~llasgs~---------------Dg~I~lwDl~s~~~i~~~~~~~~i~~ 684 (834)
.+.....+....... ...+.+++.++|. +.++-.. .|.|+.++.. ++.......-...+.
T Consensus 99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~~pNG 176 (314)
T d1pjxa_ 99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNG 176 (314)
T ss_dssp TTSCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEE
T ss_pred CCCcEEEEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceEEEEeec-CceeEeeCCcceeee
Confidence 875432221111111 2367899999986 4434321 2345555543 444444433345578
Q ss_pred EEEecCCC----EEEEE-EcCCeEEEEECCCC-eEE-----EEEeC-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCC
Q 003279 685 MRFQPRLG----RILAA-AIENYISILDVETQ-VCR-----LKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 751 (834)
Q Consensus 685 l~~sp~g~----~ll~~-s~dg~I~iwDl~t~-~~~-----~~l~~-h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s 751 (834)
++|++++. .|+++ +..+.|..||+... ... ..+.+ +......++++.+|+++++.. .+.|.+||.+.
T Consensus 177 i~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~ 256 (314)
T d1pjxa_ 177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG 256 (314)
T ss_dssp EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred eEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCC
Confidence 89998764 45554 45688999987643 221 12222 223467899999999887776 88999999876
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCC
Q 003279 752 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTE 796 (834)
Q Consensus 752 ~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs-~dg~I~Iwdl~~ 796 (834)
+ ..+..+........+++|.++++.|++.. .++.|+.+++..
T Consensus 257 g---~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 257 G---QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp B---SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred C---EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 6 34445555567789999999998666654 557888888643
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.06 E-value=2.8e-08 Score=101.75 Aligned_cols=234 Identities=9% Similarity=-0.029 Sum_probs=149.9
Q ss_pred eEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeee
Q 003279 555 VESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 633 (834)
Q Consensus 555 V~sl~fSpdg~~Lasg-s~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~ 633 (834)
=.+|+++++|+++++. +..+.|..++............-......+++++++.++++....+.|++++-.+... +..
T Consensus 16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~-~~~- 93 (260)
T d1rwia_ 16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT-VLP- 93 (260)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE-ECC-
T ss_pred CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeecccee-eee-
Confidence 4789999999976655 4456777776554333222222223457899999998887776666676665544332 222
Q ss_pred ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceee-EeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003279 634 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV 712 (834)
Q Consensus 634 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~-~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~ 712 (834)
........++++.+++. ++++-..+..+..++........ ..........+++.++++.+++...++.|..+|.+...
T Consensus 94 ~~~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~ 172 (260)
T d1rwia_ 94 FDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN 172 (260)
T ss_dssp CCSCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred eeeeeecccccccccce-eEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccce
Confidence 22235678999999876 55555556667777766543222 11223456789999998877777778899999988665
Q ss_pred EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003279 713 CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 791 (834)
Q Consensus 713 ~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~I 791 (834)
..............|+++++|.++++.. .+.|..++..... ........-.....++++++|..+++-..++.|+.
T Consensus 173 ~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~---~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~ 249 (260)
T d1rwia_ 173 QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT---STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVK 249 (260)
T ss_dssp EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC---CEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe---EEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEE
Confidence 4443334556678999999999888777 7788888765441 11111222345688999999875555455556766
Q ss_pred EEC
Q 003279 792 WNM 794 (834)
Q Consensus 792 wdl 794 (834)
++.
T Consensus 250 i~~ 252 (260)
T d1rwia_ 250 LTS 252 (260)
T ss_dssp ECC
T ss_pred EeC
Confidence 554
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.05 E-value=3.3e-07 Score=96.65 Aligned_cols=230 Identities=11% Similarity=0.081 Sum_probs=153.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC----CeEEEEecCC
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTEN 625 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D----g~I~IWDl~s 625 (834)
.....+..++|.++|+++++-...+.|+.|+.++......+.........++|++||+++++...+ +.|...+...
T Consensus 37 ~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~ 116 (319)
T d2dg1a1 37 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG 116 (319)
T ss_dssp SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred cCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence 334456789999999987777788999999988877666665666778999999999887776432 2344444444
Q ss_pred CCceeeeeccC---CCCeEEEEEccCCCcEEEEEeC------CCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEE
Q 003279 626 PDYSLRTFTGH---STTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILA 696 (834)
Q Consensus 626 ~~~~i~~~~~h---~~~V~sl~fspdg~~llasgs~------Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~ 696 (834)
.. +.....+ ...+..+++.++|. ++++... .+.+..++............-.....++|+++++.|++
T Consensus 117 ~~--~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyv 193 (319)
T d2dg1a1 117 DN--LQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWV 193 (319)
T ss_dssp CS--CEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEE
T ss_pred ce--eeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEE
Confidence 33 2222222 34577899999986 4444321 23466666554444333333345678999999998766
Q ss_pred EEc-CCeEEEEECCCC----eEE----EEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec---
Q 003279 697 AAI-ENYISILDVETQ----VCR----LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--- 763 (834)
Q Consensus 697 ~s~-dg~I~iwDl~t~----~~~----~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~--- 763 (834)
+.. .+.|..||+... ... ............++++.+|++.++.. .+.|.+||- .+ +.+.++..
T Consensus 194 ad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G---~~l~~i~~P~~ 269 (319)
T d2dg1a1 194 TETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RG---YPIGQILIPGR 269 (319)
T ss_dssp EEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TS---CEEEEEECTTG
T ss_pred ecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CC---cEEEEEeCCCc
Confidence 654 689999998642 111 11111223467899999999877776 889999995 45 45555543
Q ss_pred ---CCCceEEEEEeCCCCEEEEEEcC
Q 003279 764 ---TGNKFHSCVFHPTFPSLLVIGCY 786 (834)
Q Consensus 764 ---~~~~I~svafspdg~~L~sgs~d 786 (834)
+...+++++|.++...+++...+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~t~~~ 295 (319)
T d2dg1a1 270 DEGHMLRSTHPQFIPGTNQLIICSND 295 (319)
T ss_dssp GGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCCcCceeeeEEEeCCCCEEEEEcCC
Confidence 23457899999988877776643
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=1.9e-07 Score=104.04 Aligned_cols=272 Identities=12% Similarity=0.055 Sum_probs=162.6
Q ss_pred CCeEEEEEcCCCCEEEEEe---------CCCcEEEEeCCCCeEEEEe--ccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 003279 553 SKVESCHFSPDGKLLATGG---------HDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVW 621 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs---------~Dg~I~IWd~~t~~~~~~l--~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 621 (834)
-.+....||||+++|+... ..+.+.|||+.++...... ......+....|+|||+.||... ++.|.+.
T Consensus 61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~ 139 (465)
T d1xfda1 61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYC 139 (465)
T ss_dssp TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEE
T ss_pred cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEE
Confidence 3577888999999988764 3567899999987754332 23344566789999999998875 6678888
Q ss_pred ecCCCCceeeeeccCCCCe-----------------EEEEEccCCCcEEEEEeCCCcE----------------------
Q 003279 622 DTENPDYSLRTFTGHSTTV-----------------MSLDFHPSKEDLLCSCDNNSEI---------------------- 662 (834)
Q Consensus 622 Dl~s~~~~i~~~~~h~~~V-----------------~sl~fspdg~~llasgs~Dg~I---------------------- 662 (834)
+...+.....+..+....| ..+.|+|||+.+++.--++..|
T Consensus 140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp 219 (465)
T d1xfda1 140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP 219 (465)
T ss_dssp SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred ecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeecc
Confidence 8876554222222222222 4678999999888765444433
Q ss_pred -----------EEEECCCCceeeEeec-------CCCeeEEEEecCCCEEEEEEc-C---CeEEEEECCCCeEEEEEeCC
Q 003279 663 -----------RYWSINNGSCAGVFKC-------QSGATQMRFQPRLGRILAAAI-E---NYISILDVETQVCRLKLQGH 720 (834)
Q Consensus 663 -----------~lwDl~s~~~i~~~~~-------~~~i~~l~~sp~g~~ll~~s~-d---g~I~iwDl~t~~~~~~l~~h 720 (834)
.++|+.++........ ..-+..+.|.++++.++.... + ..|.++|..++++...+..+
T Consensus 220 ~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~ 299 (465)
T d1xfda1 220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE 299 (465)
T ss_dssp BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred ccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEc
Confidence 3444433322111110 011466889888765554443 2 26888999999776655432
Q ss_pred -CCCE----EEEEEcCCCCEEE---EEe-CC--eEEEEEcCCC---CCceeEEEeecCCCceEEE-EEeCCCCEEEEEEc
Q 003279 721 -KNQV----HSVCWNTSGEYLA---SVS-DE--LVRVWSIGSG---SKGECIHELSCTGNKFHSC-VFHPTFPSLLVIGC 785 (834)
Q Consensus 721 -~~~I----~sl~~spdg~~La---sgs-Dg--~I~IwDl~s~---~~~~~i~~~~~~~~~I~sv-afspdg~~L~sgs~ 785 (834)
..+| ....|++||+.++ ... +| .++.+++... .....+..+....-.|..+ .|+.+++.|+..+.
T Consensus 300 ~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~ 379 (465)
T d1xfda1 300 SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLST 379 (465)
T ss_dssp CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEES
T ss_pred CCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEe
Confidence 2222 3467899998433 222 33 4555443221 1112233333344455554 68998888776554
Q ss_pred CC-----eEEEEECCCCeEEE-e---ccCCCCeEEEEEeCCCCEEEEEe
Q 003279 786 YE-----TLELWNMTENKTLT-L---SAHDKLVSSLAASTVNGMVASAS 825 (834)
Q Consensus 786 dg-----~I~Iwdl~~~~~~~-l---~~h~~~V~~lafspdg~~LaSgs 825 (834)
.. .|+-.++..+.... + .........+.|||++++++..+
T Consensus 380 ~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~ 428 (465)
T d1xfda1 380 EDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (465)
T ss_dssp SSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred CCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEe
Confidence 22 35555665543321 1 13445678999999999887544
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.95 E-value=7e-07 Score=92.00 Aligned_cols=232 Identities=10% Similarity=0.160 Sum_probs=158.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc------CCCCeEEEEECCCC-CEEEEE-eCCCeEEEEecCCC
Q 003279 555 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------HTQWITDVRFSPSL-SRLATS-SADRTVRVWDTENP 626 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~------h~~~I~~l~fspdg-~~Latg-s~Dg~I~IWDl~s~ 626 (834)
-..|+++++|+++++-...+.|++||.+ ++.+..+.. .......+++..+. .++++. +.++.|.+++...
T Consensus 25 P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g- 102 (279)
T d1q7fa_ 25 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG- 102 (279)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS-
T ss_pred ccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc-
Confidence 5789999999988877778899999954 677766632 11234556665553 344433 3345677777643
Q ss_pred Cceeeee-ccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec---CCCeeEEEEecCCCEEEEEEcCCe
Q 003279 627 DYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENY 702 (834)
Q Consensus 627 ~~~i~~~-~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~---~~~i~~l~~sp~g~~ll~~s~dg~ 702 (834)
.. ...+ .........+++.+++. ++++....+.+.+++.. ++.+..+.. ......+++.++++.+++....+.
T Consensus 103 ~~-~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~ 179 (279)
T d1q7fa_ 103 QF-VRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 179 (279)
T ss_dssp CE-EEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred cc-eeecCCCcccccceeccccCCc-EEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccc
Confidence 32 3333 33456678899998876 55455556778888865 556666543 344678889998877777777899
Q ss_pred EEEEECCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeec--CCCceEEEEEeCC
Q 003279 703 ISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVFHPT 776 (834)
Q Consensus 703 I~iwDl~t~~~~~~l~--~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~--~~~~I~svafspd 776 (834)
|++||.. ++.+..+. +.......|+++++|+++++-. +..|.+|+.. + +.+..+.. .......+++.++
T Consensus 180 V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G---~~~~~~~~~~~~~~p~~vav~~d 254 (279)
T d1q7fa_ 180 VKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G---QLISALESKVKHAQCFDVALMDD 254 (279)
T ss_dssp EEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S---CEEEEEEESSCCSCEEEEEEETT
T ss_pred eeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-C---CEEEEEeCCCCCCCEeEEEEeCC
Confidence 9999975 45555553 3455688999999999887755 4479999843 4 44544433 2346789999999
Q ss_pred CCEEEEEEcCCeEEEEECCCC
Q 003279 777 FPSLLVIGCYETLELWNMTEN 797 (834)
Q Consensus 777 g~~L~sgs~dg~I~Iwdl~~~ 797 (834)
|. |++++.++.|++|.....
T Consensus 255 G~-l~V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 255 GS-VVLASKDYRLYIYRYVQL 274 (279)
T ss_dssp TE-EEEEETTTEEEEEECSCC
T ss_pred Cc-EEEEeCCCeEEEEEeeee
Confidence 96 566678889999987654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.94 E-value=9e-07 Score=93.21 Aligned_cols=229 Identities=9% Similarity=0.039 Sum_probs=149.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeC----CCcEEEEECCC
Q 003279 594 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINN 669 (834)
Q Consensus 594 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~----Dg~I~lwDl~s 669 (834)
...+..++|.++|+++++-...+.|+.|+...... ...+.........++++++|. ++++... .+.|...+...
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~-~~~~~~~~~~p~gla~~~dG~-l~va~~~~~~~~~~i~~~~~~~ 116 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-KRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENG 116 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTS
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeE-EEEEeCCCCCeeEEEECCCCC-EEEEecCCCccceeEEEEcCCC
Confidence 34457899999999777777889999999886543 344445556788999999986 4434322 33456666665
Q ss_pred CceeeEeec---CCCeeEEEEecCCCEEEEEEc------CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 003279 670 GSCAGVFKC---QSGATQMRFQPRLGRILAAAI------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 670 ~~~i~~~~~---~~~i~~l~~sp~g~~ll~~s~------dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs 740 (834)
......... ......+.+.++|+.+++... .+.+..++........... .-...+.++|+|+++.|+.+.
T Consensus 117 ~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~-~~~~pnGia~s~dg~~lyvad 195 (319)
T d2dg1a1 117 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NISVANGIALSTDEKVLWVTE 195 (319)
T ss_dssp CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EESSEEEEEECTTSSEEEEEE
T ss_pred ceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEee-ccceeeeeeeccccceEEEec
Confidence 554444432 234778999999875554322 2346666665443322222 234567899999999776665
Q ss_pred --CCeEEEEEcCCCCCcee-E----EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-Eec------cCC
Q 003279 741 --DELVRVWSIGSGSKGEC-I----HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS------AHD 806 (834)
Q Consensus 741 --Dg~I~IwDl~s~~~~~~-i----~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~------~h~ 806 (834)
.+.|+.||+........ . ............+++..+|+..++....+.|.+||- .++.+ .+. .+.
T Consensus 196 ~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~ 274 (319)
T d2dg1a1 196 TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHM 274 (319)
T ss_dssp GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCS
T ss_pred ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcC
Confidence 78999999875422111 1 111112234678999999997777778889999996 56655 222 334
Q ss_pred CCeEEEEEeCCCCEEEEEec
Q 003279 807 KLVSSLAASTVNGMVASASH 826 (834)
Q Consensus 807 ~~V~~lafspdg~~LaSgs~ 826 (834)
..+++++|.+++..+++...
T Consensus 275 ~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 275 LRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp CBCCEEEECTTSCEEEEEEE
T ss_pred ceeeeEEEeCCCCEEEEEcC
Confidence 46889999998876666554
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.90 E-value=5.4e-07 Score=94.85 Aligned_cols=236 Identities=8% Similarity=-0.022 Sum_probs=150.5
Q ss_pred CCeEEEEECCCCCEEEEEeC-------CCeEEEEecCCCCceeeeec---cCCCCeEEEEEccCCCcEEEEEeCCCcEEE
Q 003279 595 QWITDVRFSPSLSRLATSSA-------DRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 664 (834)
Q Consensus 595 ~~I~~l~fspdg~~Latgs~-------Dg~I~IWDl~s~~~~i~~~~---~h~~~V~sl~fspdg~~llasgs~Dg~I~l 664 (834)
.....++|.++|+++++... +++|..||..++........ ........++|.+++..++ +++....|..
T Consensus 18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~-vad~~~~i~~ 96 (314)
T d1pjxa_ 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLF-VADMRLGLLV 96 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEE-EEETTTEEEE
T ss_pred CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEE-EEECCCeEEE
Confidence 34678899999998776533 46788999887654222111 1123467899999987555 5555667888
Q ss_pred EECCCCceeeEeec-C----CCeeEEEEecCCCEEEEEEc---------------CCeEEEEECCCCeEEEEEeCCCCCE
Q 003279 665 WSINNGSCAGVFKC-Q----SGATQMRFQPRLGRILAAAI---------------ENYISILDVETQVCRLKLQGHKNQV 724 (834)
Q Consensus 665 wDl~s~~~i~~~~~-~----~~i~~l~~sp~g~~ll~~s~---------------dg~I~iwDl~t~~~~~~l~~h~~~I 724 (834)
+|...+........ . ...+.+++.++|..+++-.. .|.|+.++.. ++...... .-...
T Consensus 97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~-~~~~p 174 (314)
T d1pjxa_ 97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-AFQFP 174 (314)
T ss_dssp EETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-EESSE
T ss_pred EeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeC-Cccee
Confidence 99876543322221 1 12577999999887766432 2345555543 33222222 23345
Q ss_pred EEEEEcCCCC----EEEEEe--CCeEEEEEcCCCCCcee---EEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003279 725 HSVCWNTSGE----YLASVS--DELVRVWSIGSGSKGEC---IHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNM 794 (834)
Q Consensus 725 ~sl~~spdg~----~Lasgs--Dg~I~IwDl~s~~~~~~---i~~~~~-~~~~I~svafspdg~~L~sgs~dg~I~Iwdl 794 (834)
+.++|++++. +|+++. .+.|..||+........ ...+.. .......+++..+|+..++....+.|.+||.
T Consensus 175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp 254 (314)
T d1pjxa_ 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP 254 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence 7899998765 455544 77899998865422111 112221 1234567999999997777777889999999
Q ss_pred CCCeEE-EeccCCCCeEEEEEeCCCC-EEEEEecCCcEEEe
Q 003279 795 TENKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIW 833 (834)
Q Consensus 795 ~~~~~~-~l~~h~~~V~~lafspdg~-~LaSgs~DG~I~IW 833 (834)
++++.+ .+......+++++|.+|++ ++++.+.+|.|...
T Consensus 255 ~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~ 295 (314)
T d1pjxa_ 255 DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKF 295 (314)
T ss_dssp TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 887755 4455567889999999997 55666677877654
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.84 E-value=2.2e-06 Score=88.17 Aligned_cols=229 Identities=13% Similarity=0.139 Sum_probs=156.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeecc------CCCCeEEEEEccCCCcEEEE-EeCCCcEEEEECC
Q 003279 596 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG------HSTTVMSLDFHPSKEDLLCS-CDNNSEIRYWSIN 668 (834)
Q Consensus 596 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~------h~~~V~sl~fspdg~~llas-gs~Dg~I~lwDl~ 668 (834)
....|+++++++++++-.....|++||.+. .. +..+.. .......+++..+...++++ .+.++.|.+++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G-~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RF-KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTTS-CE-EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCCC-CE-EEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence 467999999999888777788999999763 32 333321 12234556666654444444 3455678777764
Q ss_pred CCceeeEeec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE--eCCCCCEEEEEEcCCCCEEEEEe-CCe
Q 003279 669 NGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL--QGHKNQVHSVCWNTSGEYLASVS-DEL 743 (834)
Q Consensus 669 s~~~i~~~~~--~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l--~~h~~~I~sl~~spdg~~Lasgs-Dg~ 743 (834)
+.....+.. ......+++.+++..+++....+.+.+++.. ++.+..+ ..+......+++++++.++++.. .+.
T Consensus 102 -g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~ 179 (279)
T d1q7fa_ 102 -GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 179 (279)
T ss_dssp -SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred -ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccc
Confidence 565555543 3446789999998888777777889898865 4455554 33566788999999998887777 789
Q ss_pred EEEEEcCCCCCceeEEEee--cCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEE-Eec--cCCCCeEEEEEeCC
Q 003279 744 VRVWSIGSGSKGECIHELS--CTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTL-TLS--AHDKLVSSLAASTV 817 (834)
Q Consensus 744 I~IwDl~s~~~~~~i~~~~--~~~~~I~svafspdg~~L~sgs~d-g~I~Iwdl~~~~~~-~l~--~h~~~V~~lafspd 817 (834)
|++||... ..+..+. +.......+++.++|+.+++-..+ ..|.+|+. +++.+ .+. ........|++.++
T Consensus 180 V~~~d~~G----~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~d 254 (279)
T d1q7fa_ 180 VKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDD 254 (279)
T ss_dssp EEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETT
T ss_pred eeeeecCC----ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCC
Confidence 99999754 3444443 234457899999999855554333 47999985 45544 332 33346889999999
Q ss_pred CCEEEEEecCCcEEEeC
Q 003279 818 NGMVASASHDKCVKIWK 834 (834)
Q Consensus 818 g~~LaSgs~DG~I~IWd 834 (834)
|.+++ ++.+++|++|+
T Consensus 255 G~l~V-~~~n~~v~~fr 270 (279)
T d1q7fa_ 255 GSVVL-ASKDYRLYIYR 270 (279)
T ss_dssp TEEEE-EETTTEEEEEE
T ss_pred CcEEE-EeCCCeEEEEE
Confidence 97555 56789999985
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=1.7e-07 Score=104.34 Aligned_cols=260 Identities=13% Similarity=0.117 Sum_probs=159.2
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc---CCCCeEEEEECCCCCEEEEEe---------CCCeEEEEecCC
Q 003279 558 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFSPSLSRLATSS---------ADRTVRVWDTEN 625 (834)
Q Consensus 558 l~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~---h~~~I~~l~fspdg~~Latgs---------~Dg~I~IWDl~s 625 (834)
+.|.+++.++.. ..+|.|.+||+.+++....+.. ....+....|+||+++|+... ..+.+.+||+.+
T Consensus 22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~ 100 (465)
T d1xfda1 22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH 100 (465)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence 358888876653 5578999999998776544433 223677889999999988764 357899999997
Q ss_pred CCce-eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCC-------------------CeeEE
Q 003279 626 PDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-------------------GATQM 685 (834)
Q Consensus 626 ~~~~-i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~-------------------~i~~l 685 (834)
+... +.........+....|+|||+.++++. ++.|.+.+...+..+....... .-..+
T Consensus 101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~--~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~ 178 (465)
T d1xfda1 101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH 178 (465)
T ss_dssp CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred CceeeccCccCCccccceeeeccCCceEEEEe--cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceE
Confidence 6642 112223345566789999999887765 6789999888776554443211 12467
Q ss_pred EEecCCCEEEEEEcC-C---------------------------------eEEEEECCCCeEEEEEe------CCCCCEE
Q 003279 686 RFQPRLGRILAAAIE-N---------------------------------YISILDVETQVCRLKLQ------GHKNQVH 725 (834)
Q Consensus 686 ~~sp~g~~ll~~s~d-g---------------------------------~I~iwDl~t~~~~~~l~------~h~~~I~ 725 (834)
-|+|||++|++...| . .+.++|+.++....... ....-+.
T Consensus 179 ~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~ 258 (465)
T d1xfda1 179 WWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYIT 258 (465)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEE
T ss_pred EECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceee
Confidence 799999999987532 2 14455554442221111 0112367
Q ss_pred EEEEcCCCCEEEEEeC--C---eEEEEEcCCCCCceeEEEeecCCCc----eEEEEEeCCCCEEEEE--E-cCC--eEEE
Q 003279 726 SVCWNTSGEYLASVSD--E---LVRVWSIGSGSKGECIHELSCTGNK----FHSCVFHPTFPSLLVI--G-CYE--TLEL 791 (834)
Q Consensus 726 sl~~spdg~~LasgsD--g---~I~IwDl~s~~~~~~i~~~~~~~~~----I~svafspdg~~L~sg--s-~dg--~I~I 791 (834)
.+.|++++++++...+ . .|.++|..++.......+ ..... -....|+++|..++.. + .+| .++.
T Consensus 259 ~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e--~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~ 336 (465)
T d1xfda1 259 MVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED--ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH 336 (465)
T ss_dssp EEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE--ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE
T ss_pred eeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEE--cCCceEeccCCceeEccCCCeeEEEEeeeecccCceEE
Confidence 8899999987776552 2 688899988743222221 11221 2345899999865432 2 233 4554
Q ss_pred EECC-------CCeEEEeccCCCCeEEE-EEeCCCCEEE
Q 003279 792 WNMT-------ENKTLTLSAHDKLVSSL-AASTVNGMVA 822 (834)
Q Consensus 792 wdl~-------~~~~~~l~~h~~~V~~l-afspdg~~La 822 (834)
+++. .+....+....-.|..+ .|+.+++.|+
T Consensus 337 ~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vy 375 (465)
T d1xfda1 337 ITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIY 375 (465)
T ss_dssp EEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEE
T ss_pred EEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEE
Confidence 4432 22222344444556665 5788777554
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.69 E-value=2.3e-05 Score=81.11 Aligned_cols=222 Identities=14% Similarity=0.098 Sum_probs=151.7
Q ss_pred EEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeec
Q 003279 556 ESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 634 (834)
Q Consensus 556 ~sl~fSpdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~ 634 (834)
.+..|++... ++.+--..+.|..||.++++.. .+ .....+.++++.+++.++++ +.+ .|.++|..+++.......
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~-~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~ 96 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VH-ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAEL 96 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE-ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EE-ECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeee
Confidence 4567887544 4444446789999999987654 22 23457889999988876665 454 588999988764222111
Q ss_pred c---CCCCeEEEEEccCCCcEEEEEeC---CCcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEc-CCeEEEEE
Q 003279 635 G---HSTTVMSLDFHPSKEDLLCSCDN---NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILD 707 (834)
Q Consensus 635 ~---h~~~V~sl~fspdg~~llasgs~---Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwD 707 (834)
. ....++.+.+.|+|..++.+... .+.-.+|.+..++.......-.....++|+++++.++++.. .+.|..|+
T Consensus 97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~ 176 (295)
T d2ghsa1 97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVP 176 (295)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEee
Confidence 1 12357889999998754433322 23456677777776666655566788999999998777765 57899998
Q ss_pred CCC------C--eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEe-CCC
Q 003279 708 VET------Q--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH-PTF 777 (834)
Q Consensus 708 l~t------~--~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafs-pdg 777 (834)
+.. + .....+.+.......++++.+|.+.++.. .+.|.+||- .+ +.+..+......+++|+|- ++.
T Consensus 177 ~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G---~~~~~i~lP~~~~T~~~FGG~d~ 252 (295)
T d2ghsa1 177 LDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG---NHIARYEVPGKQTTCPAFIGPDA 252 (295)
T ss_dssp BCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC---CEEEEEECSCSBEEEEEEESTTS
T ss_pred ecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CC---cEeeEecCCCCceEEEEEeCCCC
Confidence 742 1 12223334455678999999999887776 778999995 44 5667776666779999996 677
Q ss_pred CEEEEEEc
Q 003279 778 PSLLVIGC 785 (834)
Q Consensus 778 ~~L~sgs~ 785 (834)
+.|++.+.
T Consensus 253 ~~LyvTta 260 (295)
T d2ghsa1 253 SRLLVTSA 260 (295)
T ss_dssp CEEEEEEB
T ss_pred CEEEEEEC
Confidence 77776653
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.65 E-value=1.8e-06 Score=87.29 Aligned_cols=231 Identities=11% Similarity=0.067 Sum_probs=134.8
Q ss_pred EEcCC--CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC-C-----CeEEEEecCCCCcee
Q 003279 559 HFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-D-----RTVRVWDTENPDYSL 630 (834)
Q Consensus 559 ~fSpd--g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~-D-----g~I~IWDl~s~~~~i 630 (834)
..+|| |+.||..+ ++.|++.|+.+++.. .+..+.+.+...+|+|||+.||.... + ..|.+++..++..
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~-- 80 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI-- 80 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE--
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce--
Confidence 46788 99988775 467999999988765 56667788999999999999986643 2 2467777766543
Q ss_pred eeecc-------CCCCeEEEEEccCCCcEEEEEeCC-----CcEEEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEE
Q 003279 631 RTFTG-------HSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 698 (834)
Q Consensus 631 ~~~~~-------h~~~V~sl~fspdg~~llasgs~D-----g~I~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s 698 (834)
..+.. .......+.|+|+++.++++...+ ..+..++...+...... ...... .+.+++..++...
T Consensus 81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~ 157 (281)
T d1k32a2 81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN--LGPATH-ILFADGRRVIGRN 157 (281)
T ss_dssp EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC--SCSCSE-EEEETTEEEEEES
T ss_pred EEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec--CCccce-eeecCCCeEEEee
Confidence 22221 223456788999998777654322 23555565544433222 122223 3444444444432
Q ss_pred c-CC-----------eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC--CeEEEEEcCCCCCceeEEEeecC
Q 003279 699 I-EN-----------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSD--ELVRVWSIGSGSKGECIHELSCT 764 (834)
Q Consensus 699 ~-dg-----------~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsD--g~I~IwDl~s~~~~~~i~~~~~~ 764 (834)
. +. ...++........... .+........++++..+.....+ ..|+++|+.+... + .+...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~---~lt~~ 232 (281)
T d1k32a2 158 TFELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDL-R---KHTSF 232 (281)
T ss_dssp CSCCTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSC-E---ECCCC
T ss_pred ccccceeeeeccCCcceeeeeccccceeecc-CCccccceeeeeccccceecccccccceEEEeCCCCce-E---EeecC
Confidence 2 11 1222222222322222 23344555666665332222223 3788889877632 2 22211
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEec
Q 003279 765 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS 803 (834)
Q Consensus 765 ~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~ 803 (834)
.......|+|||+.|+.. .++.|+++|+.+++...+.
T Consensus 233 -~~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i~ 269 (281)
T d1k32a2 233 -TDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIE 269 (281)
T ss_dssp -CSSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECC
T ss_pred -CCcccccCcCCCCEEEEE-eCCEEEEEECCCCCEEEec
Confidence 222334689999988764 4678999999999877553
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.59 E-value=4e-05 Score=79.28 Aligned_cols=220 Identities=9% Similarity=0.018 Sum_probs=144.3
Q ss_pred EEEEECCCCC-EEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEe
Q 003279 598 TDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 676 (834)
Q Consensus 598 ~~l~fspdg~-~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~ 676 (834)
.+..|++... ++.+=-..+.|..||..++.. ..+. ....+.++++.+++. ++++ +. ..|.++|..+++.....
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~--~~~~-~~~~~~~i~~~~dg~-l~va-~~-~gl~~~d~~tg~~~~l~ 94 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRK--TVHA-LPFMGSALAKISDSK-QLIA-SD-DGLFLRDTATGVLTLHA 94 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--EEEE-CSSCEEEEEEEETTE-EEEE-ET-TEEEEEETTTCCEEEEE
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeE--EEEE-CCCCcEEEEEecCCC-EEEE-Ee-CccEEeecccceeeEEe
Confidence 3556776444 444434577899999887653 2222 345788999988865 4444 33 46999999988765544
Q ss_pred ecC-----CCeeEEEEecCCCEEEEEEcC----CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEE
Q 003279 677 KCQ-----SGATQMRFQPRLGRILAAAIE----NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVR 745 (834)
Q Consensus 677 ~~~-----~~i~~l~~sp~g~~ll~~s~d----g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~ 745 (834)
... ..+..+.+.++|+..++.... +.-.+|.+..++....+.. -.....++|+++++.++.+. .+.|+
T Consensus 95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~ 173 (295)
T d2ghsa1 95 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLM 173 (295)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred eeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceee
Confidence 321 236788999998876665432 3456676667765544432 33567899999999776665 67899
Q ss_pred EEEcCCCCC-----ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEe-CCC
Q 003279 746 VWSIGSGSK-----GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS-TVN 818 (834)
Q Consensus 746 IwDl~s~~~-----~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafs-pdg 818 (834)
.|++..... ................+++..+|.+.++.-..+.|..||.. ++.+ .+.-....+++++|- +|.
T Consensus 174 ~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~~~~~i~lP~~~~T~~~FGG~d~ 252 (295)
T d2ghsa1 174 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAFIGPDA 252 (295)
T ss_dssp EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEEESTTS
T ss_pred EeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-CcEeeEecCCCCceEEEEEeCCCC
Confidence 998754211 11222333445667889999999866666677899999965 5555 444444679999996 566
Q ss_pred CEE-EEEe
Q 003279 819 GMV-ASAS 825 (834)
Q Consensus 819 ~~L-aSgs 825 (834)
+.| +|..
T Consensus 253 ~~LyvTta 260 (295)
T d2ghsa1 253 SRLLVTSA 260 (295)
T ss_dssp CEEEEEEB
T ss_pred CEEEEEEC
Confidence 544 4443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.42 E-value=1e-05 Score=81.45 Aligned_cols=220 Identities=9% Similarity=0.062 Sum_probs=130.7
Q ss_pred EECCC--CCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCC-----cEEEEECCCCcee
Q 003279 601 RFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCA 673 (834)
Q Consensus 601 ~fspd--g~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg-----~I~lwDl~s~~~i 673 (834)
..+|| |+.++..+ ++.|.+.|+.++. .+.+..+...+...+|+|||+.++++...++ .|.+++..+++..
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~--~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~ 81 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGS--TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK 81 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCC--EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCC--EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence 35688 88888765 4578888998765 4566667788999999999998887765443 4888888887765
Q ss_pred eEeecC-------CCeeEEEEecCCCEEEEEEcC------CeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 003279 674 GVFKCQ-------SGATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 740 (834)
Q Consensus 674 ~~~~~~-------~~i~~l~~sp~g~~ll~~s~d------g~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs 740 (834)
...... .......|+|+++.|+..... ..+...+...+...... ......+.+.+++.+++...
T Consensus 82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 158 (281)
T d1k32a2 82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN---LGPATHILFADGRRVIGRNT 158 (281)
T ss_dssp ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC---SCSCSEEEEETTEEEEEESC
T ss_pred EeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec---CCccceeeecCCCeEEEeec
Confidence 543221 235678899999998876542 24566666665543322 22222333333333333322
Q ss_pred -CC-----------eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCC--eEEEEECCCCeEEEeccC
Q 003279 741 -DE-----------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYE--TLELWNMTENKTLTLSAH 805 (834)
Q Consensus 741 -Dg-----------~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs-~dg--~I~Iwdl~~~~~~~l~~h 805 (834)
+. ...++..... ................++++ .++... .++ .|+++|+.+++...+..+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~ 232 (281)
T d1k32a2 159 FELPHWKGYRGGTRGKIWIEVNSG----AFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSF 232 (281)
T ss_dssp SCCTTSTTCCSTTCCEEEEEEETT----EEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCC
T ss_pred cccceeeeeccCCcceeeeecccc----ceeeccCCccccceeeeecc--ccceecccccccceEEEeCCCCceEEeecC
Confidence 11 1111111111 11122223334445556655 333333 322 789999988877665443
Q ss_pred CCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 806 DKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 806 ~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
.. .....|+|||+.|+.. .+|.|+++|
T Consensus 233 ~~-~~~~~~SpDG~~I~f~-~~~~l~~~d 259 (281)
T d1k32a2 233 TD-YYPRHLNTDGRRILFS-KGGSIYIFN 259 (281)
T ss_dssp CS-SCEEEEEESSSCEEEE-ETTEEEEEC
T ss_pred CC-cccccCcCCCCEEEEE-eCCEEEEEE
Confidence 32 2334689999987764 467787765
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.35 E-value=3.7e-05 Score=82.01 Aligned_cols=257 Identities=9% Similarity=0.020 Sum_probs=157.9
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEeccCC---------------------------------------CCeE--EEEECC-
Q 003279 567 LATGGHDKKAVLWCTESFTVKSTLEEHT---------------------------------------QWIT--DVRFSP- 604 (834)
Q Consensus 567 Lasgs~Dg~I~IWd~~t~~~~~~l~~h~---------------------------------------~~I~--~l~fsp- 604 (834)
+.+|+..|.|+|+-+.+++.+..+...+ +... .+.+..
T Consensus 16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG 95 (459)
T d1fwxa2 16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 95 (459)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence 5678888999999888888777653100 0111 333433
Q ss_pred --CCCEEEEEe-CCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCc-EEEEEeCC------------------CcE
Q 003279 605 --SLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDNN------------------SEI 662 (834)
Q Consensus 605 --dg~~Latgs-~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~-llasgs~D------------------g~I 662 (834)
||++|++.. .+.+|.+.|+++.+............+..++..++.+. +++..+.+ +.+
T Consensus 96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~ 175 (459)
T d1fwxa2 96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 175 (459)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence 678887776 57899999998765422222223455666666543322 33333321 346
Q ss_pred EEEECCCCceeeEeecCCCeeEEEEecCCCEEEEEEcCC---------------eE-----------------------E
Q 003279 663 RYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN---------------YI-----------------------S 704 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg---------------~I-----------------------~ 704 (834)
.++|..+.+....+........+.++++|+++++.+.+. .+ .
T Consensus 176 t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~ 255 (459)
T d1fwxa2 176 TAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 255 (459)
T ss_dssp EEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence 789999999998888888889999999999999987531 13 3
Q ss_pred EEECCCC---eEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC--------CCceeEEEeecCCCceEEE
Q 003279 705 ILDVETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG--------SKGECIHELSCTGNKFHSC 771 (834)
Q Consensus 705 iwDl~t~---~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~--------~~~~~i~~~~~~~~~I~sv 771 (834)
+.|.++. ..+..+. -....+.+.++|||+++++++ +.++.|+|+++- ....++..-....-.....
T Consensus 256 VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht 334 (459)
T d1fwxa2 256 VVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHT 334 (459)
T ss_dssp EEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEE
T ss_pred eecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcccc
Confidence 3343321 1111121 122346789999999999988 889999999642 1112232222234455677
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCC----------eEE-EeccCCCCeEEE------EEeCCCCEEEEEe
Q 003279 772 VFHPTFPSLLVIGCYETLELWNMTEN----------KTL-TLSAHDKLVSSL------AASTVNGMVASAS 825 (834)
Q Consensus 772 afspdg~~L~sgs~dg~I~Iwdl~~~----------~~~-~l~~h~~~V~~l------afspdg~~LaSgs 825 (834)
+|+..|.-..+.--|..|.-|++... .++ ++.-|-. +-.+ ...|+|++|++.+
T Consensus 335 ~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~-~gh~~~~~g~t~~~dgk~l~~~n 404 (459)
T d1fwxa2 335 AFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ-PGHLKTVMGETLDATNDWLVCLS 404 (459)
T ss_dssp EECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC-EEEEEETTTTSTTCCSSEEEEEE
T ss_pred ccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccC-CCCCccCcCCcCCCCCCEEEEec
Confidence 89888853333446889999998432 233 3333322 2222 2357888888875
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.33 E-value=0.00051 Score=69.47 Aligned_cols=244 Identities=8% Similarity=-0.016 Sum_probs=156.5
Q ss_pred CEEEEEeCCCcEEEEeCCCCe-----EEEEeccCCCCeEEEEECCCCCEEEEE-eCCCeEEEEecCCCCceeeeeccCCC
Q 003279 565 KLLATGGHDKKAVLWCTESFT-----VKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHST 638 (834)
Q Consensus 565 ~~Lasgs~Dg~I~IWd~~t~~-----~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~s~~~~i~~~~~h~~ 638 (834)
.+|+.+.. +.|+-.+++... ....+..+...|..|+|....+.|+-+ ..++.|+..+++.... ...+.....
T Consensus 2 ~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~-~~v~~~~~~ 79 (263)
T d1npea_ 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDLG 79 (263)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTCC
T ss_pred CEEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc-EEEEEeccc
Confidence 45554443 467667665432 122333444568889999877766655 4567899988876443 333333345
Q ss_pred CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEcC---CeEEEEECCCCeEE
Q 003279 639 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE---NYISILDVETQVCR 714 (834)
Q Consensus 639 ~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~d---g~I~iwDl~t~~~~ 714 (834)
.+.++++..-++.+.++-...+.|.+.++....+...+.. ......++++|..++++..... ..|...++......
T Consensus 80 ~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~ 159 (263)
T d1npea_ 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR 159 (263)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred cccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce
Confidence 7889999877777777777788999999986654443333 3568899999998888877653 24666677654433
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEE
Q 003279 715 LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLEL 791 (834)
Q Consensus 715 ~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs-~dg~I~I 791 (834)
......-....++++++.+..|+.+. .+.|...|+... .....+.. ......+++. +..|+... ..+.|..
T Consensus 160 ~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~---~~~~v~~~-~~~P~~lav~--~~~lYwtd~~~~~I~~ 233 (263)
T d1npea_ 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIA 233 (263)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred eeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCC---CeEEEECC-CCCcEEEEEE--CCEEEEEECCCCEEEE
Confidence 33333445678999998888776665 678999998754 22222232 2334567775 45676665 4568999
Q ss_pred EECCCCeEEEec--cCCCCeEEEEEeC
Q 003279 792 WNMTENKTLTLS--AHDKLVSSLAAST 816 (834)
Q Consensus 792 wdl~~~~~~~l~--~h~~~V~~lafsp 816 (834)
.|..+++.+... ........|++.+
T Consensus 234 ~~~~~g~~~~~~~~~~~~~~~gi~v~~ 260 (263)
T d1npea_ 234 MDLAISKEMDTFHPHKQTRLYGITIAL 260 (263)
T ss_dssp EETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred EECCCCccceEECCCCCCCcceEEEeC
Confidence 999988876433 2334455665554
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=0.0033 Score=63.34 Aligned_cols=230 Identities=8% Similarity=-0.033 Sum_probs=150.1
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEecCCCC---ceeeeeccCCCCeE
Q 003279 566 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPD---YSLRTFTGHSTTVM 641 (834)
Q Consensus 566 ~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~s~~---~~i~~~~~h~~~V~ 641 (834)
+|+.+.. ..|+..++++......+. ....+..++|++..+.|+-.. .++.|...+++... .....+......+.
T Consensus 3 fLl~s~~-~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~ 80 (266)
T d1ijqa1 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (266)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECC-CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc
Confidence 4444443 458888988765554444 455678999998777766654 56677777765321 11122233345677
Q ss_pred EEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEEe
Q 003279 642 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQ 718 (834)
Q Consensus 642 sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i~~l~~sp~g~~ll~~s~--dg~I~iwDl~t~~~~~~l~ 718 (834)
++++.+.+..+.++....+.|.+.++........... ......++++|..++++.+.. .+.|...++..........
T Consensus 81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~ 160 (266)
T d1ijqa1 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (266)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc
Confidence 8999887788888877788999999987665544443 356889999998888887764 3568888887554444444
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECC
Q 003279 719 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMT 795 (834)
Q Consensus 719 ~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs-~dg~I~Iwdl~ 795 (834)
..-....++++++.+..|+.+. .+.|...++..... ..+............+++. +.+|+.+. .++.|+..+..
T Consensus 161 ~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~-~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~ 237 (266)
T d1ijqa1 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 237 (266)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCE-EEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECC
Confidence 3446678999999888777766 67999999876432 2232222223345667766 34566665 45688888877
Q ss_pred CCeEE
Q 003279 796 ENKTL 800 (834)
Q Consensus 796 ~~~~~ 800 (834)
++...
T Consensus 238 ~g~~~ 242 (266)
T d1ijqa1 238 TGSDV 242 (266)
T ss_dssp TCCCC
T ss_pred CCcce
Confidence 76544
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.15 E-value=0.00038 Score=73.45 Aligned_cols=272 Identities=9% Similarity=0.042 Sum_probs=151.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCC-----------cEEEEeCCCCeEE--EEe-ccCCCCeEEEEECCCCCEEEEEeCC-CeE
Q 003279 554 KVESCHFSPDGKLLATGGHDK-----------KAVLWCTESFTVK--STL-EEHTQWITDVRFSPSLSRLATSSAD-RTV 618 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg-----------~I~IWd~~t~~~~--~~l-~~h~~~I~~l~fspdg~~Latgs~D-g~I 618 (834)
.+.......+|++++.|+.+. .+.+||..++.-. ... ..|.......++.+++++++.|+.+ ..+
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 100 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence 344555667899998888531 3779999876532 122 2344445577889999999988765 589
Q ss_pred EEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCC------CcEEEEECCCCceeeEeec--------------
Q 003279 619 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKC-------------- 678 (834)
Q Consensus 619 ~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~D------g~I~lwDl~s~~~i~~~~~-------------- 678 (834)
.+||..+..............-.+.+..+|+. +++.++.+ ..+.+||..+.+-...-..
T Consensus 101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~-v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~ 179 (387)
T d1k3ia3 101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY 179 (387)
T ss_dssp EEEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred eEecCccCcccccccccccccccceeeecCCc-eeeeccccccccccceeeeecCCCCceeecCCCccccccccccccee
Confidence 99999876542211111222234566677776 44455432 3689999988754322110
Q ss_pred -CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeC------CCC--CEEEEEE-cCCCCEEEEEe--CC----
Q 003279 679 -QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG------HKN--QVHSVCW-NTSGEYLASVS--DE---- 742 (834)
Q Consensus 679 -~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~------h~~--~I~sl~~-spdg~~Lasgs--Dg---- 742 (834)
......+...+++..++.+...+.+.++|..+......... +.. .-.++.+ ..++++++.++ ++
T Consensus 180 ~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~ 259 (387)
T d1k3ia3 180 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD 259 (387)
T ss_dssp TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred eccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCc
Confidence 00112233345566667777777788888877644322110 111 1122323 34566666665 21
Q ss_pred ---eEEEEEcCCCCCceeEEEee---cCCCceEEEEEeCCCCEEEEEEcCC-----------eEEEEECCCCeEEEeccC
Q 003279 743 ---LVRVWSIGSGSKGECIHELS---CTGNKFHSCVFHPTFPSLLVIGCYE-----------TLELWNMTENKTLTLSAH 805 (834)
Q Consensus 743 ---~I~IwDl~s~~~~~~i~~~~---~~~~~I~svafspdg~~L~sgs~dg-----------~I~Iwdl~~~~~~~l~~h 805 (834)
...++++............. .......+.+..++++.+++++.+. .+.+||..+.+...+...
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~ 339 (387)
T d1k3ia3 260 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN 339 (387)
T ss_dssp CCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC
T ss_pred ccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCC
Confidence 33444443322111111111 1122234566678999888887531 578999988876544322
Q ss_pred CC--C-eEEEEEeCCCCEEEEEec
Q 003279 806 DK--L-VSSLAASTVNGMVASASH 826 (834)
Q Consensus 806 ~~--~-V~~lafspdg~~LaSgs~ 826 (834)
.. . -....+.+||++|+.|+.
T Consensus 340 ~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 340 SIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp SSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCcccceEEEEECCCCEEEEEeCC
Confidence 11 1 123345799999999884
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.08 E-value=0.0018 Score=65.21 Aligned_cols=218 Identities=7% Similarity=-0.013 Sum_probs=140.5
Q ss_pred EEEEEeCCCeEEEEecCCCCce----eeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec-CCCe
Q 003279 608 RLATSSADRTVRVWDTENPDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGA 682 (834)
Q Consensus 608 ~Latgs~Dg~I~IWDl~s~~~~----i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~-~~~i 682 (834)
+|+.+. .+.|+-.+++..... ...+..+...+..|+|++..+.++.+-..++.|+..++........+.. -..+
T Consensus 3 fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p 81 (263)
T d1npea_ 3 HLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (263)
T ss_dssp EEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred EEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccc
Confidence 444443 346777777643311 1223334456888999988887887777788999999986655554443 2568
Q ss_pred eEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C-Ce--EEEEEcCCCCCcee
Q 003279 683 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-EL--VRVWSIGSGSKGEC 757 (834)
Q Consensus 683 ~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-D-g~--I~IwDl~s~~~~~~ 757 (834)
..+++..-++.|+.+.. .+.|.+.++....+...+......+..++++|...+|+... . +. |...++.... .
T Consensus 82 ~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~---~ 158 (263)
T d1npea_ 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN---R 158 (263)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC---C
T ss_pred cEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC---c
Confidence 89999987788877665 57999999987654444444446789999999887777655 2 23 4444554432 1
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEeccCCCCeEEEEEeCCCCEEEEEe-cCCcEE
Q 003279 758 IHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVK 831 (834)
Q Consensus 758 i~~~~~~~~~I~svafspdg~~L~sgs-~dg~I~Iwdl~~~~~~~l~~h~~~V~~lafspdg~~LaSgs-~DG~I~ 831 (834)
.......-.....+++++.+..|+.+. ..+.|...|+.......+........+|++. +..|+-.. ..+.|.
T Consensus 159 ~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~ 232 (263)
T d1npea_ 159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVI 232 (263)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEE
Confidence 222223345668999999888887775 4568999999876655433333345678876 34444443 445444
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=0.006 Score=61.28 Aligned_cols=216 Identities=8% Similarity=0.035 Sum_probs=138.5
Q ss_pred EEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce----eeEeec-CCCee
Q 003279 609 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFKC-QSGAT 683 (834)
Q Consensus 609 Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~----i~~~~~-~~~i~ 683 (834)
|+.+. ...|+..++++... ..+......+..++|++..+.++.+-..++.|...++..... ...+.. ...+.
T Consensus 4 Ll~s~-~~~I~~~~l~~~~~--~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~ 80 (266)
T d1ijqa1 4 LFFTN-RHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (266)
T ss_dssp EEEEC-BSSEEEEETTSCCC--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEC-CCeEEEEECCCCcc--eeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc
Confidence 44443 34588889987553 333345567889999998887777666677788777754221 111221 24577
Q ss_pred EEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeEE
Q 003279 684 QMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIH 759 (834)
Q Consensus 684 ~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i~ 759 (834)
.+++.+.++.|+.+.. .+.|.++++........+.........++++|...+|+... .+.|...++... ....
T Consensus 81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs---~~~~ 157 (266)
T d1ijqa1 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIYS 157 (266)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEEE
T ss_pred eEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC---ceec
Confidence 8999988888887765 47899999988766666666667789999999766666554 346777777654 2222
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEe---ccCCCCeEEEEEeCCCCEEEEEecCCcEE
Q 003279 760 ELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTL---SAHDKLVSSLAASTVNGMVASASHDKCVK 831 (834)
Q Consensus 760 ~~~~~~~~I~svafspdg~~L~sgs~-dg~I~Iwdl~~~~~~~l---~~h~~~V~~lafspdg~~LaSgs~DG~I~ 831 (834)
.....-.....+++++.+..|+.+.. .+.|...++.......+ ........+|++.. +.++.+-..++.|+
T Consensus 158 l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~-~~ly~td~~~~~I~ 232 (266)
T d1ijqa1 158 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIF 232 (266)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEE
T ss_pred ccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEEC-CEEEEEECCCCeEE
Confidence 22333456789999998888887755 56999999977543322 22234566787762 33444433555554
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.99 E-value=0.0073 Score=60.91 Aligned_cols=248 Identities=10% Similarity=0.158 Sum_probs=157.8
Q ss_pred CCcEEEEeCCCCeEE-EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCc
Q 003279 573 DKKAVLWCTESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 651 (834)
Q Consensus 573 Dg~I~IWd~~t~~~~-~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~ 651 (834)
...|.|.|+.+.... +.--. --+.-.+|..+.||.-+ ..++.|||+++... ++.+.- ...|.-=.|-.+.
T Consensus 44 ~~~VvIidl~n~~~~~Rrpi~----AdsAIMhP~~~IiALra-g~~LQiFnletK~k-lks~~~-~e~VvfWkWis~~-- 114 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTM-TDDVTFWKWISLN-- 114 (327)
T ss_dssp EEEEEEEETTSTTSCEEEECC----CSEEEECSSSSEEEEEE-TTEEEEEETTTTEE-EEEEEC-SSCCCEEEESSSS--
T ss_pred CceEEEEECCCCCcceecccc----hhhhhcCCCCcEEEEec-CCeEEEEehhHhhh-hceEEc-CCCcEEEEecCCC--
Confidence 347889998765432 22211 22445678888887776 56899999998553 555543 3466666676553
Q ss_pred EEEEEeCCCcEEEEECCC-CceeeEeec-----CCCeeEEEEecCCCEEEEEEc-------CCeEEEEECCCCeEEEEEe
Q 003279 652 LLCSCDNNSEIRYWSINN-GSCAGVFKC-----QSGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQ 718 (834)
Q Consensus 652 llasgs~Dg~I~lwDl~s-~~~i~~~~~-----~~~i~~l~~sp~g~~ll~~s~-------dg~I~iwDl~t~~~~~~l~ 718 (834)
.|+..+ +..|+-|+++. ..+.+.+.. +..|.....+++.++++..+- .|.+.+|..+.+. -..++
T Consensus 115 ~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ie 192 (327)
T d1utca2 115 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIE 192 (327)
T ss_dssp EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEEC
T ss_pred EEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-Ccccc
Confidence 333333 56899999954 245555553 344777888889998877653 3678899988653 34566
Q ss_pred CCCCCEEEEEEcCCC---CEEEEEe----CCeEEEEEcCCCCCc-----eeEEEe-e---cCCCceEEEEEeCCCCEEEE
Q 003279 719 GHKNQVHSVCWNTSG---EYLASVS----DELVRVWSIGSGSKG-----ECIHEL-S---CTGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 719 ~h~~~I~sl~~spdg---~~Lasgs----Dg~I~IwDl~s~~~~-----~~i~~~-~---~~~~~I~svafspdg~~L~s 782 (834)
+|......+.+..+. .+++.+. .+++.|.++...... +....+ - ....-..++.+++....++.
T Consensus 193 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyv 272 (327)
T d1utca2 193 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 272 (327)
T ss_dssp CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEE
T ss_pred ceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEE
Confidence 775554444433221 2333333 358999999774321 111111 1 12345678889999999999
Q ss_pred EEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEE
Q 003279 783 IGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVK 831 (834)
Q Consensus 783 gs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~ 831 (834)
.+..|.|++||+.++.++ .-+-....|...+-+.+..=+++...+|.|.
T Consensus 273 iTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 273 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred EecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence 999999999999999988 3334456666555555544555566777663
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.93 E-value=0.004 Score=67.10 Aligned_cols=239 Identities=8% Similarity=0.024 Sum_probs=135.2
Q ss_pred eEEEEEcCCCCEEEEEeC-----CCcEEEEeCCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEeCC-------------
Q 003279 555 VESCHFSPDGKLLATGGH-----DKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSAD------------- 615 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~-----Dg~I~IWd~~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~D------------- 615 (834)
+..+++|||+++||.+-. -..|+++|+++++.+. .+.. .....++|.+|++.|+....+
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~ 204 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence 445678999999886532 2478999999998874 3321 123578999999988765433
Q ss_pred ---CeEEEEecCCCCce-eeeeccC--CCCeEEEEEccCCCcEEEEEeC--CCc--EEEEECCCCc--------eeeEee
Q 003279 616 ---RTVRVWDTENPDYS-LRTFTGH--STTVMSLDFHPSKEDLLCSCDN--NSE--IRYWSINNGS--------CAGVFK 677 (834)
Q Consensus 616 ---g~I~IWDl~s~~~~-i~~~~~h--~~~V~sl~fspdg~~llasgs~--Dg~--I~lwDl~s~~--------~i~~~~ 677 (834)
..|.+|.+.+.... ...+... ...+..+..+.++.++++.... +.. +.+.|+.... ....+.
T Consensus 205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 284 (430)
T d1qfma1 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (430)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeec
Confidence 25888888765432 2233322 3346677888998887765542 333 4455554321 111222
Q ss_pred cCCCeeEEEEecCCCEEEEEEc----CCeEEEEECCCCeE---EEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEE
Q 003279 678 CQSGATQMRFQPRLGRILAAAI----ENYISILDVETQVC---RLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRV 746 (834)
Q Consensus 678 ~~~~i~~l~~sp~g~~ll~~s~----dg~I~iwDl~t~~~---~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg--~I~I 746 (834)
..........+ .+..++..+. ++.|...++..... ...+..+...+..-.+...+.+|+... ++ .|++
T Consensus 285 ~~~~~~~~~~~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v 363 (430)
T d1qfma1 285 NFEGEYDYVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL 363 (430)
T ss_dssp SSSSCEEEEEE-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred ccccceEEEec-CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEE
Confidence 21222222222 3344444433 35777777765421 223333444455444444455555543 54 7899
Q ss_pred EEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCeE
Q 003279 747 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKT 799 (834)
Q Consensus 747 wDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~d----g~I~Iwdl~~~~~ 799 (834)
+++.++. .........+.+..+...++...+...-.+ .+++.||+.+++.
T Consensus 364 ~~~~~~~---~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 364 HDLATGA---LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EETTTCC---EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EECCCCc---EEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 9998773 333333344556555555666555543332 3899999988753
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.80 E-value=0.0009 Score=75.41 Aligned_cols=188 Identities=9% Similarity=0.125 Sum_probs=111.2
Q ss_pred CCCEEEEEeCCCcEEEEeC-CCCeEEEEeccCCC----Ce-------EEEEECCCCCEEEEEeCCCeEEEEecCCCCcee
Q 003279 563 DGKLLATGGHDKKAVLWCT-ESFTVKSTLEEHTQ----WI-------TDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 630 (834)
Q Consensus 563 dg~~Lasgs~Dg~I~IWd~-~t~~~~~~l~~h~~----~I-------~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i 630 (834)
+|.++++.+.++.|...|. ++|+.+-++..... .+ ..+++. +..|+.++.|+.|...|.++++...
T Consensus 62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w 139 (571)
T d2ad6a1 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhc
Confidence 4544443344688988887 47998877642110 00 123333 3467888899999999999987543
Q ss_pred eeecc---CCCCeEEEEEccCCCcEEEEEe-----CCCcEEEEECCCCceeeEeecCCC---------------------
Q 003279 631 RTFTG---HSTTVMSLDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSG--------------------- 681 (834)
Q Consensus 631 ~~~~~---h~~~V~sl~fspdg~~llasgs-----~Dg~I~lwDl~s~~~i~~~~~~~~--------------------- 681 (834)
..-.. ....++.--...+ ..+++.++ .+|.|+.+|+++|+.+..+.....
T Consensus 140 ~~~~~~~~~~~~~t~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 218 (571)
T d2ad6a1 140 EVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG 218 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred cccccccccccceeecCeEeC-CeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCccc
Confidence 32111 1111111111112 32333222 367899999999999987653210
Q ss_pred -----------------e-eEEEEecCCCEEEEEEc----------------CCeEEEEECCCCeEEEEEeCCCCC----
Q 003279 682 -----------------A-TQMRFQPRLGRILAAAI----------------ENYISILDVETQVCRLKLQGHKNQ---- 723 (834)
Q Consensus 682 -----------------i-~~l~~sp~g~~ll~~s~----------------dg~I~iwDl~t~~~~~~l~~h~~~---- 723 (834)
+ ....+.+..+.++.+.. ...|...|+++++.+..+..+...
T Consensus 219 ~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~ 298 (571)
T d2ad6a1 219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDF 298 (571)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCC
T ss_pred ccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCcccccc
Confidence 1 23567777777776655 346888999999999888753221
Q ss_pred -----EEEEEEcCCCC---EEEEEe-CCeEEEEEcCCCC
Q 003279 724 -----VHSVCWNTSGE---YLASVS-DELVRVWSIGSGS 753 (834)
Q Consensus 724 -----I~sl~~spdg~---~Lasgs-Dg~I~IwDl~s~~ 753 (834)
.....+..+++ .++... +|.++++|..+++
T Consensus 299 D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~ 337 (571)
T d2ad6a1 299 AGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGN 337 (571)
T ss_dssp CCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred ccccccceeeeeccCccccceeeccccceEEEEecCCCc
Confidence 11222223443 344455 8899999998884
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.77 E-value=0.027 Score=56.61 Aligned_cols=225 Identities=13% Similarity=0.187 Sum_probs=144.7
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccC
Q 003279 557 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 636 (834)
Q Consensus 557 sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h 636 (834)
+.-.+|..+.||.=+ ..++.|||+++...+..+.-. ..|.-=.|-.+ +.|+..+ +..|+-|+++....+.+.+..|
T Consensus 67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s~P~k~fdR~ 142 (327)
T d1utca2 67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRH 142 (327)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEESSS-SEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC-CCcEEEEecCC-CEEEEEc-CCceEEEcccCCCCchhhhhhc
Confidence 455678888888766 468999999999998887644 46777778755 4555553 5579999997666667777666
Q ss_pred C----CCeEEEEEccCCCcEEEEEe------CCCcEEEEECCCCceeeEeecCCCeeEE-EEe----cCCCEEEEEE---
Q 003279 637 S----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSGATQM-RFQ----PRLGRILAAA--- 698 (834)
Q Consensus 637 ~----~~V~sl~fspdg~~llasgs------~Dg~I~lwDl~s~~~i~~~~~~~~i~~l-~~s----p~g~~ll~~s--- 698 (834)
. ..|.....+++.+.++++|= -.|.+.+|..+.+.. ..+.. .+.+. .+- +....+++-.
T Consensus 143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~s-Q~ieG--haa~F~~~~~~g~~~~~~lf~fa~r~ 219 (327)
T d1utca2 143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEG--HAASFAQFKMEGNAEESTLFCFAVRG 219 (327)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEECC--SEEEEEEECCTTCSSCEEEEEEEEEE
T ss_pred ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcC-ccccc--eeeeeEEEEcCCCCCCceEEEEEECC
Confidence 4 46777778888887776651 236788898875532 22221 11111 010 0111122211
Q ss_pred -cCCeEEEEECCCC--------eEEEEEe-C---CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC
Q 003279 699 -IENYISILDVETQ--------VCRLKLQ-G---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 764 (834)
Q Consensus 699 -~dg~I~iwDl~t~--------~~~~~l~-~---h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~ 764 (834)
..+.++|.++... +....+. . ..+-..++..++.-.+++.-+ -|.|++||+.++ .++..-+..
T Consensus 220 ~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTg---t~i~~nRIs 296 (327)
T d1utca2 220 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRIS 296 (327)
T ss_dssp TTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECC
T ss_pred CCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccc---cEEEEeecC
Confidence 2368899888652 1111221 1 234556788888777777777 999999999999 788777777
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003279 765 GNKFHSCVFHPTFPSLLVIGCYETLEL 791 (834)
Q Consensus 765 ~~~I~svafspdg~~L~sgs~dg~I~I 791 (834)
...|...+-+.+..-+++...+|.|..
T Consensus 297 ~~~iF~~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 297 GETIFVTAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred CCceEEeccCCCCceEEEECCCCeEEE
Confidence 777776666666666777777776543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.71 E-value=0.0033 Score=70.64 Aligned_cols=255 Identities=9% Similarity=-0.007 Sum_probs=143.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCC----CCeEEEEECCCCCEEEEEe------CCCeEEEEecCCCCceeeee
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITDVRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTF 633 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~----~~I~~l~fspdg~~Latgs------~Dg~I~IWDl~s~~~~i~~~ 633 (834)
+..|+.++.|+.|.-.|.++++.+....... ..++.--.-.++ .++.+. .+|.|+.+|+.+++...+..
T Consensus 115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 193 (571)
T d2ad6a1 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence 3467788899999999999999886653211 111111011133 444444 37889999999987644322
Q ss_pred ccC------------------------------------CCCe-EEEEEccCCCcEEEEEeC----------------CC
Q 003279 634 TGH------------------------------------STTV-MSLDFHPSKEDLLCSCDN----------------NS 660 (834)
Q Consensus 634 ~~h------------------------------------~~~V-~sl~fspdg~~llasgs~----------------Dg 660 (834)
... ...+ ...++.+.... ++.+.. ..
T Consensus 194 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~-~y~~tg~~~p~~~~~r~g~n~~s~ 272 (571)
T d2ad6a1 194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNL-FYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTE-EEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCe-eeeecccccCcccccccccccccc
Confidence 110 1112 22455565443 333322 24
Q ss_pred cEEEEECCCCceeeEeecC-C---------CeeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEEeCCC--C---
Q 003279 661 EIRYWSINNGSCAGVFKCQ-S---------GATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK--N--- 722 (834)
Q Consensus 661 ~I~lwDl~s~~~i~~~~~~-~---------~i~~l~~sp~g~---~ll~~s~dg~I~iwDl~t~~~~~~l~~h~--~--- 722 (834)
.|...|+++++.+..+... . ......+..+++ .++.++.+|.++++|.++++.+....... .
T Consensus 273 svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~ 352 (571)
T d2ad6a1 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred ceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccc
Confidence 6888999999998877741 1 122223333443 35667778999999999998875432110 0
Q ss_pred --------CE--------------------------EEEEEcCCCCEEEEEe-C--------------------------
Q 003279 723 --------QV--------------------------HSVCWNTSGEYLASVS-D-------------------------- 741 (834)
Q Consensus 723 --------~I--------------------------~sl~~spdg~~Lasgs-D-------------------------- 741 (834)
++ ...+++|+..++++.. +
T Consensus 353 ~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (571)
T d2ad6a1 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeec
Confidence 00 1256677766665543 2
Q ss_pred -----------CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEeccCCCCe-
Q 003279 742 -----------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLV- 809 (834)
Q Consensus 742 -----------g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~~l~~h~~~V- 809 (834)
|.|..+|+.++ +.+-...... ...+-.+.-.+..+++++.|+.++.+|.++|+.+-.......+
T Consensus 433 ~~~~~~~~~~~G~l~AiD~~TG---~~~W~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~ 508 (571)
T d2ad6a1 433 PGPNGPTKKEMGQIRAFDLTTG---KAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGI 508 (571)
T ss_dssp ECTTSTTSCCCEEEEEECTTTC---CEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred cccCCcccCCcccEEEeccCCC---ceeeEcCCCC-CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCce
Confidence 23555555555 2222222111 1111112234667888999999999999999999222222222
Q ss_pred -EEEEEeCCCC-EEEEE
Q 003279 810 -SSLAASTVNG-MVASA 824 (834)
Q Consensus 810 -~~lafspdg~-~LaSg 824 (834)
.-+.|..||+ ||++.
T Consensus 509 a~P~ty~~dGkqYi~v~ 525 (571)
T d2ad6a1 509 GSPMTYSFKGKQYIGSM 525 (571)
T ss_dssp SCCEEEEETTEEEEEEE
T ss_pred ecceEEEECCEEEEEEE
Confidence 2255666887 55443
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.68 E-value=0.0018 Score=72.64 Aligned_cols=263 Identities=13% Similarity=0.072 Sum_probs=154.3
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEeccCCC----------Ce-EEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeec
Q 003279 566 LLATGGHDKKAVLWCTESFTVKSTLEEHTQ----------WI-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 634 (834)
Q Consensus 566 ~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~----------~I-~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~ 634 (834)
.|++++.++.|+-.|.++|+.+-++..... .+ ..++. .+..++.++.|+.|...|..+++.......
T Consensus 68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~~~ 145 (560)
T d1kv9a2 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (560)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEeccCc
Confidence 666777889999999999999977632111 00 11111 145688888999999999998875433222
Q ss_pred cCCCCeEEEEEcc--CCCcEEEEEe------CCCcEEEEECCCCceeeEeecCC--------------------------
Q 003279 635 GHSTTVMSLDFHP--SKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQS-------------------------- 680 (834)
Q Consensus 635 ~h~~~V~sl~fsp--dg~~llasgs------~Dg~I~lwDl~s~~~i~~~~~~~-------------------------- 680 (834)
........+.-.| .+. .++.+. ..|.|.-+|.++|+.+..+....
T Consensus 146 ~~~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (560)
T d1kv9a2 146 TDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWK 224 (560)
T ss_dssp SCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHH
T ss_pred cCcccceeeeeeeeeecC-cccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccccccccccccccc
Confidence 1111100110000 012 233332 23679999999999998876311
Q ss_pred -----C-eeEEEEecCCCEEEEEEc-------------------CCeEEEEECCCCeEEEEEeCCCCCE---------EE
Q 003279 681 -----G-ATQMRFQPRLGRILAAAI-------------------ENYISILDVETQVCRLKLQGHKNQV---------HS 726 (834)
Q Consensus 681 -----~-i~~l~~sp~g~~ll~~s~-------------------dg~I~iwDl~t~~~~~~l~~h~~~I---------~s 726 (834)
. -..+.+.+..+.++.+.. ...|..+|+++++.+..+......+ .-
T Consensus 225 ~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l 304 (560)
T d1kv9a2 225 LGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITL 304 (560)
T ss_dssp HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEE
T ss_pred ccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeee
Confidence 0 122567777777766442 2358888999999887776422211 11
Q ss_pred EEEcCCCC---EEEEEe-CCeEEEEEcCCCCCceeEEEeecCC------------------------------------C
Q 003279 727 VCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG------------------------------------N 766 (834)
Q Consensus 727 l~~spdg~---~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~------------------------------------~ 766 (834)
+.+..+++ .++.+. +|.++++|..+++ .+....... .
T Consensus 305 ~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~---~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~ 381 (560)
T d1kv9a2 305 AELNIDGKPRKVLMQAPKNGFFYVLDRTNGK---LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH 381 (560)
T ss_dssp EEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred eeeecCCceeeeeeecCccceEEEEecCCCc---ccccccccccccccccChhhccccccccccccccceeeeecccccc
Confidence 22222332 444455 8899999998884 332211100 0
Q ss_pred ceEEEEEeCCCCEEEEEEcC------------------------------------CeEEEEECCCCeEEEeccCCCCeE
Q 003279 767 KFHSCVFHPTFPSLLVIGCY------------------------------------ETLELWNMTENKTLTLSAHDKLVS 810 (834)
Q Consensus 767 ~I~svafspdg~~L~sgs~d------------------------------------g~I~Iwdl~~~~~~~l~~h~~~V~ 810 (834)
.....+++|+...+++...+ +.|.-||+.+++++-.........
T Consensus 382 ~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~ 461 (560)
T d1kv9a2 382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWN 461 (560)
T ss_dssp CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCC
T ss_pred ccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCCCCC
Confidence 01245677877776665432 467888999998883222233333
Q ss_pred EEEEeCCCCEEEEEecCCcEEEeC
Q 003279 811 SLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 811 ~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+-.++-.+.++++|+.||.++-+|
T Consensus 462 gg~l~TagglVF~G~~dg~l~A~D 485 (560)
T d1kv9a2 462 GGTLSTAGNLVFQGTAAGQMHAYS 485 (560)
T ss_dssp CCEEEETTTEEEEECTTSEEEEEE
T ss_pred CceeEECCCEEEEECCCCcEEEEE
Confidence 223344577888899999998775
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.66 E-value=0.0042 Score=65.85 Aligned_cols=191 Identities=15% Similarity=0.173 Sum_probs=125.7
Q ss_pred EEEEcc---CCCcEEEEEeCCCcEEEEECCCCceeeEeec--CCCeeEEEEe--cCCCEEEEEEcCC-------------
Q 003279 642 SLDFHP---SKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQ--PRLGRILAAAIEN------------- 701 (834)
Q Consensus 642 sl~fsp---dg~~llasgs~Dg~I~lwDl~s~~~i~~~~~--~~~i~~l~~s--p~g~~ll~~s~dg------------- 701 (834)
.+.+.. ||+++++.-..+..|.+.|+++.++...+.. ...+..++.. |+..++++.+...
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 444543 7888888888899999999999998775543 4567776665 4556777766522
Q ss_pred -----eEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CC---------------eEEEEE------------
Q 003279 702 -----YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE---------------LVRVWS------------ 748 (834)
Q Consensus 702 -----~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg---------------~I~IwD------------ 748 (834)
.+.++|..+.+....+.- ......+.++++|+++++.+ +. .+.+++
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk 247 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 247 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence 367899999888777653 34567899999999999876 21 233333
Q ss_pred -----------cCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCe------------EEEecc
Q 003279 749 -----------IGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENK------------TLTLSA 804 (834)
Q Consensus 749 -----------l~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~-dg~I~Iwdl~~~~------------~~~l~~ 804 (834)
.+.......+..+.. ......+.++|||+++++++. +.++.|+|+++-. +.....
T Consensus 248 ~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e 326 (459)
T d1fwxa2 248 YQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 326 (459)
T ss_dssp SEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB
T ss_pred cEEeCCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc
Confidence 332111112222222 233567899999999988876 5699999986311 112222
Q ss_pred CCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 805 HDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 805 h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
..-....-+|+..|....|.--|..|.-|+
T Consensus 327 lglgPLht~fd~~g~aytslfids~v~kw~ 356 (459)
T d1fwxa2 327 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWN 356 (459)
T ss_dssp CCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred cCcCccccccCCCceEEEEeeccceEEEEe
Confidence 334456778888886555666888888885
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.58 E-value=0.0074 Score=67.99 Aligned_cols=188 Identities=11% Similarity=0.079 Sum_probs=113.3
Q ss_pred CCCEEEEEeCCCcEEEEeC-CCCeEEEEeccCCC----------C-eEEEEECCC----CCEEEEEeCCCeEEEEecCCC
Q 003279 563 DGKLLATGGHDKKAVLWCT-ESFTVKSTLEEHTQ----------W-ITDVRFSPS----LSRLATSSADRTVRVWDTENP 626 (834)
Q Consensus 563 dg~~Lasgs~Dg~I~IWd~-~t~~~~~~l~~h~~----------~-I~~l~fspd----g~~Latgs~Dg~I~IWDl~s~ 626 (834)
+|.++++++.++.|...|. ++|+.+-++..... . -+.+++.++ ..+|+.++.|+.|.-.|..++
T Consensus 62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG 141 (596)
T d1w6sa_ 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (596)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence 4544444555677888886 57888877632110 1 123455432 346888999999999999998
Q ss_pred CceeeeeccC--C-CCeEE-EEEccCCCcEEEEEe------CCCcEEEEECCCCceeeEeecCC----------------
Q 003279 627 DYSLRTFTGH--S-TTVMS-LDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQS---------------- 680 (834)
Q Consensus 627 ~~~i~~~~~h--~-~~V~s-l~fspdg~~llasgs------~Dg~I~lwDl~s~~~i~~~~~~~---------------- 680 (834)
+.+...-... . ..++. -.+. + . .++.+. ..|.|+-+|+++|+.+..+....
T Consensus 142 ~~~w~~~~~d~~~~~~~t~~P~v~-~-~-~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~ 218 (596)
T d1w6sa_ 142 ETVWKVENSDIKVGSTLTIAPYVV-K-D-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (596)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-T-T-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred ceeccccccccccccccccCCcEE-C-C-eEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccc
Confidence 8644332211 1 11111 1111 1 2 333443 24899999999999998765311
Q ss_pred -----------------------CeeEEEEecCCCEEEEEEcC----------------CeEEEEECCCCeEEEEEeC--
Q 003279 681 -----------------------GATQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQG-- 719 (834)
Q Consensus 681 -----------------------~i~~l~~sp~g~~ll~~s~d----------------g~I~iwDl~t~~~~~~l~~-- 719 (834)
.-..+.+.+..+.++.+..+ ..|...|+++++.+..+..
T Consensus 219 ~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~ 298 (596)
T d1w6sa_ 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP 298 (596)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccccccccccccccccccee
Confidence 01245667777777776542 3588899999999887764
Q ss_pred CCC-------CEEEEE-EcCCCC---EEEEEe-CCeEEEEEcCCCC
Q 003279 720 HKN-------QVHSVC-WNTSGE---YLASVS-DELVRVWSIGSGS 753 (834)
Q Consensus 720 h~~-------~I~sl~-~spdg~---~Lasgs-Dg~I~IwDl~s~~ 753 (834)
|.. .+..+. ...+|+ .++... +|.++++|..+++
T Consensus 299 ~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~ 344 (596)
T d1w6sa_ 299 HDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA 344 (596)
T ss_dssp TCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred ccccCCccccceeeeeccccccccccceeccccccceeeecCCCCc
Confidence 221 111222 223443 455555 8899999998884
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.57 E-value=0.011 Score=66.32 Aligned_cols=263 Identities=12% Similarity=0.080 Sum_probs=152.2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEeccCC----------CCe-EEEEECCCCCEEEEEeCCCeEEEEecCCCCceee
Q 003279 563 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT----------QWI-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 631 (834)
Q Consensus 563 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~----------~~I-~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~ 631 (834)
+| .|++++.++.|.-+|.++|+.+-.+.... ..+ ..+.+. ...++.++.|+.+...|..+++....
T Consensus 77 ~g-~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~ 153 (573)
T d1kb0a2 77 DG-IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWH 153 (573)
T ss_dssp TT-EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CC-EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceec
Confidence 44 66677788999999999999998764211 011 122222 33677788899999999998876433
Q ss_pred eecc-CC-CCeE--E-EEEccCCCcEEEEEe------CCCcEEEEECCCCceeeEeecCC--------------------
Q 003279 632 TFTG-HS-TTVM--S-LDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQS-------------------- 680 (834)
Q Consensus 632 ~~~~-h~-~~V~--s-l~fspdg~~llasgs------~Dg~I~lwDl~s~~~i~~~~~~~-------------------- 680 (834)
.-.. +. ..+. . ..+. + . .+++++ ..|.|+.+|.++|+.+..+....
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~-~-~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~ 230 (573)
T d1kb0a2 154 QNTFEGQKGSLTITGAPRVF-K-G-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD 230 (573)
T ss_dssp EETTTTCCSSCBCCSCCEEE-T-T-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred ccCccCCcceEEeecceEEE-e-c-cEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccC
Confidence 3221 11 1111 1 0111 1 2 333433 24689999999999998765311
Q ss_pred ------------Ce-eEEEEecCCCEEEEEEc-------------------CCeEEEEECCCCeEEEEEeCCCC------
Q 003279 681 ------------GA-TQMRFQPRLGRILAAAI-------------------ENYISILDVETQVCRLKLQGHKN------ 722 (834)
Q Consensus 681 ------------~i-~~l~~sp~g~~ll~~s~-------------------dg~I~iwDl~t~~~~~~l~~h~~------ 722 (834)
.+ ....+.++...++.... ...|...|+++++.+..+.....
T Consensus 231 ~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d 310 (573)
T d1kb0a2 231 PSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYT 310 (573)
T ss_dssp GGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred CCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCccccccc
Confidence 01 23566777777665432 12578889999988877654221
Q ss_pred ---CEEEEEEcCCC---CEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-------------------------------
Q 003279 723 ---QVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCT------------------------------- 764 (834)
Q Consensus 723 ---~I~sl~~spdg---~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~------------------------------- 764 (834)
+........++ .+++.++ +|.++++|..+++. +......
T Consensus 311 ~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 387 (573)
T d1kb0a2 311 STQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF---ISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVP 387 (573)
T ss_dssp CCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSS
T ss_pred ccceeeecceecCCCceeeeeeccccceeEEeccccccc---cccccccccccccccccccceeeeeeccccccceEEee
Confidence 12222222333 2444455 88999999998843 2221110
Q ss_pred ----CCceEEEEEeCCCCEEEEEEcC-------------------------------------------CeEEEEECCCC
Q 003279 765 ----GNKFHSCVFHPTFPSLLVIGCY-------------------------------------------ETLELWNMTEN 797 (834)
Q Consensus 765 ----~~~I~svafspdg~~L~sgs~d-------------------------------------------g~I~Iwdl~~~ 797 (834)
.......+++|+...+++...+ |.|.-||+.++
T Consensus 388 g~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tG 467 (573)
T d1kb0a2 388 GPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ 467 (573)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT
T ss_pred cccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCC
Confidence 0011234677877766664332 24667788888
Q ss_pred eEEEeccCCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 003279 798 KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 834 (834)
Q Consensus 798 ~~~~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IWd 834 (834)
+.+-...+..+...=..+-.+.+|++|+.||.++.||
T Consensus 468 k~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~D 504 (573)
T d1kb0a2 468 KAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (573)
T ss_dssp EEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred ceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEE
Confidence 7772222222222222334677888899999998875
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.45 E-value=0.015 Score=64.73 Aligned_cols=258 Identities=12% Similarity=0.122 Sum_probs=146.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCC-eEEEEECC--CCCEEEEEe------CCCeEEEEecCCCCceeeeec
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSP--SLSRLATSS------ADRTVRVWDTENPDYSLRTFT 634 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~-I~~l~fsp--dg~~Latgs------~Dg~I~IWDl~s~~~~i~~~~ 634 (834)
+..|+.++.|+.|.-.|..+++.+.....+... -..+.-.| ....++.+. ..|.|.-+|..+++...+...
T Consensus 117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 196 (560)
T d1kv9a2 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (560)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeee
Confidence 446888889999999999999998776432211 01111111 122344432 236799999999886444332
Q ss_pred cC-----------------------------CCCeE-EEEEccCCCcEEEEEeC------------------CCcEEEEE
Q 003279 635 GH-----------------------------STTVM-SLDFHPSKEDLLCSCDN------------------NSEIRYWS 666 (834)
Q Consensus 635 ~h-----------------------------~~~V~-sl~fspdg~~llasgs~------------------Dg~I~lwD 666 (834)
.. ...+. .+.+.+....+++..+. ...|...|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld 276 (560)
T d1kv9a2 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR 276 (560)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred ccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEec
Confidence 11 11111 24555665533332211 24677889
Q ss_pred CCCCceeeEeecC-CC---------eeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEEeCCC-CCE--------
Q 003279 667 INNGSCAGVFKCQ-SG---------ATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK-NQV-------- 724 (834)
Q Consensus 667 l~s~~~i~~~~~~-~~---------i~~l~~sp~g~---~ll~~s~dg~I~iwDl~t~~~~~~l~~h~-~~I-------- 724 (834)
+++++.+..+... .. ..-+.+..+++ .++.+..+|.++++|..+++.+.....-. ...
T Consensus 277 ~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~ 356 (560)
T d1kv9a2 277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG 356 (560)
T ss_dssp TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred CCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhc
Confidence 9999988777641 11 11222333332 45566778999999999998876543211 000
Q ss_pred ---------------------------EEEEEcCCCCEEEEEe-C-----------------------------------
Q 003279 725 ---------------------------HSVCWNTSGEYLASVS-D----------------------------------- 741 (834)
Q Consensus 725 ---------------------------~sl~~spdg~~Lasgs-D----------------------------------- 741 (834)
...+++|+..+++... +
T Consensus 357 ~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (560)
T d1kv9a2 357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV 436 (560)
T ss_dssp CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred cccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCccc
Confidence 1345667666665533 2
Q ss_pred -CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCC-CCeEEEEEeCCC
Q 003279 742 -ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-KLVSSLAASTVN 818 (834)
Q Consensus 742 -g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~-~~V~~lafspdg 818 (834)
|.|.-||+.++ +.+-.+... .....-.+.-.+..+++++.|+.++.||.++|+++ .+.... ..-.-+.|..+|
T Consensus 437 ~G~l~A~D~~tG---k~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dG 512 (560)
T d1kv9a2 437 SGALLAWDPVKQ---KAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAG 512 (560)
T ss_dssp EEEEEEEETTTT---EEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred ccceEEEeCCCC---eEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECC
Confidence 35667777777 444333321 12222233445678888999999999999999999 332111 111124555678
Q ss_pred C-EEEEEe
Q 003279 819 G-MVASAS 825 (834)
Q Consensus 819 ~-~LaSgs 825 (834)
+ ||++.+
T Consensus 513 kqyv~v~a 520 (560)
T d1kv9a2 513 RQYVAIMA 520 (560)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 6 555443
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.41 E-value=0.033 Score=62.40 Aligned_cols=257 Identities=9% Similarity=0.017 Sum_probs=143.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCe-EEEEECC--CCCEEEEEeC------CCeEEEEecCCCCceeeeec
Q 003279 564 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI-TDVRFSP--SLSRLATSSA------DRTVRVWDTENPDYSLRTFT 634 (834)
Q Consensus 564 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I-~~l~fsp--dg~~Latgs~------Dg~I~IWDl~s~~~~i~~~~ 634 (834)
+.+|+.++.|+.|.-.|.++++.+..+....... ..+.-.| -+..+++++. .|.|+-+|+.+++...+...
T Consensus 121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t 200 (596)
T d1w6sa_ 121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (596)
T ss_dssp CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeec
Confidence 3478889999999999999999987764221100 0111111 1334555543 58999999999886544322
Q ss_pred cC------------------------------------CCC-eEEEEEccCCCcEEEEEeC---------------CCcE
Q 003279 635 GH------------------------------------STT-VMSLDFHPSKEDLLCSCDN---------------NSEI 662 (834)
Q Consensus 635 ~h------------------------------------~~~-V~sl~fspdg~~llasgs~---------------Dg~I 662 (834)
.. ... -..+++.+....+++..+. ...|
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~si 280 (596)
T d1w6sa_ 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (596)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred cCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccc
Confidence 11 011 1234555654433332221 2358
Q ss_pred EEEECCCCceeeEeecC-C---------CeeEEEE-ecCC---CEEEEEEcCCeEEEEECCCCeEEEEEeCCC--CC---
Q 003279 663 RYWSINNGSCAGVFKCQ-S---------GATQMRF-QPRL---GRILAAAIENYISILDVETQVCRLKLQGHK--NQ--- 723 (834)
Q Consensus 663 ~lwDl~s~~~i~~~~~~-~---------~i~~l~~-sp~g---~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~--~~--- 723 (834)
...|+++++.+..+... . ....+.. ..++ +.++....+|.++++|..+++.+....... ..
T Consensus 281 vAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~ 360 (596)
T d1w6sa_ 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (596)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred cccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeecccccccccccc
Confidence 88999999998877641 1 1122222 2233 246667778999999999998775432100 00
Q ss_pred --------E--------------------------EEEEEcCCCCEEEEEe-C---------------------------
Q 003279 724 --------V--------------------------HSVCWNTSGEYLASVS-D--------------------------- 741 (834)
Q Consensus 724 --------I--------------------------~sl~~spdg~~Lasgs-D--------------------------- 741 (834)
+ ...+++|+..+++... +
T Consensus 361 ~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (596)
T d1w6sa_ 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (596)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred ccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccccccccccccccccccccccc
Confidence 0 1235556555554432 1
Q ss_pred ------------CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-Eecc-CCC
Q 003279 742 ------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA-HDK 807 (834)
Q Consensus 742 ------------g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~-h~~ 807 (834)
|.|.-||+.++ +.+-.... ...+..-.++..+..+++++.|+.++.||.++|+++ .+.. ...
T Consensus 441 ~~~g~~~~~~~~G~l~A~D~~TG---~~~W~~~~-~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~ 516 (596)
T d1w6sa_ 441 GPKGDRQNYEGLGQIKAYNAITG---DYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA 516 (596)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTC---CEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred CcccCcccCCCcceEEEEeCCCC---ceecccCC-CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCc
Confidence 34556666655 22222211 111122223345677888999999999999999999 3221 111
Q ss_pred CeEEEEEeCCCC-EEEEE
Q 003279 808 LVSSLAASTVNG-MVASA 824 (834)
Q Consensus 808 ~V~~lafspdg~-~LaSg 824 (834)
.-.=+.|..+|+ ||+..
T Consensus 517 ~a~P~tY~~dGkQYvav~ 534 (596)
T d1w6sa_ 517 IGYPMTYTHKGTQYVAIY 534 (596)
T ss_dssp CSCCEEEEETTEEEEEEE
T ss_pred ccCCeEEEECCEEEEEEE
Confidence 111244556786 55543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.36 E-value=0.011 Score=61.66 Aligned_cols=234 Identities=9% Similarity=0.020 Sum_probs=122.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEeCCCCeEEEEecc-CCCCeEEEEECCCCCEEEEEeCC------CeEEEE
Q 003279 550 ASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSAD------RTVRVW 621 (834)
Q Consensus 550 gH~~~V~sl~fSpdg~~Lasgs~D-g~I~IWd~~t~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~D------g~I~IW 621 (834)
.|.....++++.+||++++.|+.+ ..+.+||..+..-...-.. ....-.+++..+|+++++.++.+ ..+.+|
T Consensus 73 ~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~y 152 (387)
T d1k3ia3 73 KHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVY 152 (387)
T ss_dssp SCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEE
T ss_pred CcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeee
Confidence 344445567889999999988765 5899999887655432111 11223467777899999988753 368999
Q ss_pred ecCCCCceeeee--------ccCCC-----CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeec--C-------
Q 003279 622 DTENPDYSLRTF--------TGHST-----TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--Q------- 679 (834)
Q Consensus 622 Dl~s~~~~i~~~--------~~h~~-----~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~--~------- 679 (834)
|..+........ ..+.. .-..+...+++. +++.+..++.+.++|..+......... .
T Consensus 153 d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (387)
T d1k3ia3 153 SPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGS-VFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDA 231 (387)
T ss_dssp ETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGC-EEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCC
T ss_pred cCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCC-EEEecCcCCcEEecCcccCcEeeccccccCcccCccc
Confidence 998765321100 00000 001111223333 555666667777777776654332211 0
Q ss_pred CCeeEEEEe-cCCCEEEEEEcCC--------eEEEEECCC---CeEEEE-EeC--CCCCEEEEEEcCCCCEEEEEe-CC-
Q 003279 680 SGATQMRFQ-PRLGRILAAAIEN--------YISILDVET---QVCRLK-LQG--HKNQVHSVCWNTSGEYLASVS-DE- 742 (834)
Q Consensus 680 ~~i~~l~~s-p~g~~ll~~s~dg--------~I~iwDl~t---~~~~~~-l~~--h~~~I~sl~~spdg~~Lasgs-Dg- 742 (834)
..-.++.+. .+++.+++++... ...++++.. ...... ... +...-.+....+|++++++|+ +.
T Consensus 232 ~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~ 311 (387)
T d1k3ia3 232 MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRG 311 (387)
T ss_dssp BTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBC
T ss_pred ccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccC
Confidence 011223333 3455566665421 234444332 111111 111 122233556678999888876 21
Q ss_pred ----------eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003279 743 ----------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 785 (834)
Q Consensus 743 ----------~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~ 785 (834)
++.+||..+.. ...+.........-....+.+||+.++.|+.
T Consensus 312 ~~~~~~~~~~~ve~Ydp~~~~-W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 312 IPFEDSTPVFTPEIYVPEQDT-FYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp CTTCCCSBCCCCEEEEGGGTE-EEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred ccCCCCcEeceEEEEECCCCe-EEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 47889987652 1111111111111123456799998888874
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.24 E-value=0.073 Score=59.28 Aligned_cols=186 Identities=9% Similarity=-0.015 Sum_probs=109.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEeccCC--------CCe-EEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeecc
Q 003279 565 KLLATGGHDKKAVLWCTESFTVKSTLEEHT--------QWI-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 635 (834)
Q Consensus 565 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~--------~~I-~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~ 635 (834)
..|++++.++.|.-.|.++|+.+-++.... ..+ ..+++. +..|+.++.|+.+...|..+++........
T Consensus 69 g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W~~~~~ 146 (582)
T d1flga_ 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe--CCceEEecCCCeEEEecccccceeeeeccc
Confidence 467777888999999999999987763210 011 122332 356788899999999999988764333221
Q ss_pred CCCCe-----EEEEEcc--CCCcEEEEE------eCCCcEEEEECCCCceeeEeecCCC---------------------
Q 003279 636 HSTTV-----MSLDFHP--SKEDLLCSC------DNNSEIRYWSINNGSCAGVFKCQSG--------------------- 681 (834)
Q Consensus 636 h~~~V-----~sl~fsp--dg~~llasg------s~Dg~I~lwDl~s~~~i~~~~~~~~--------------------- 681 (834)
..... .-+.+.+ .+..+++.+ +..+.|.-+|.++|+.+..+.....
T Consensus 147 ~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~~ 226 (582)
T d1flga_ 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCccccccccccccccccccccC
Confidence 11000 0011111 123233332 2356799999999998876643110
Q ss_pred ---------------------eeEEEEecCCCEEEEEEc------------------------CCeEEEEECCCCeEEEE
Q 003279 682 ---------------------ATQMRFQPRLGRILAAAI------------------------ENYISILDVETQVCRLK 716 (834)
Q Consensus 682 ---------------------i~~l~~sp~g~~ll~~s~------------------------dg~I~iwDl~t~~~~~~ 716 (834)
-..+.+.+..+.++++.. ...|...|+++++.+..
T Consensus 227 ~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W~ 306 (582)
T d1flga_ 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhhc
Confidence 123677787787777652 23588889999998887
Q ss_pred EeC--CCCC--------E-EEEEEcCCCC---EEEEEe-CCeEEEEEcCCCC
Q 003279 717 LQG--HKNQ--------V-HSVCWNTSGE---YLASVS-DELVRVWSIGSGS 753 (834)
Q Consensus 717 l~~--h~~~--------I-~sl~~spdg~---~Lasgs-Dg~I~IwDl~s~~ 753 (834)
+.. |.-. + ..+.. .++. .++... ++.++++|..+++
T Consensus 307 ~q~~~~D~wd~d~~~~p~l~d~~~-~~g~~~~~v~~~~k~g~~~vldr~tG~ 357 (582)
T d1flga_ 307 YQHTPNDAWDFSGNNELVLFDYKA-KDGKIVKATAHADRNGFFYVVDRSNGK 357 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEEC-SSSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred cccccccccccccccccccccccc-ccccccceeEeecccccEEeecccCCc
Confidence 764 3221 1 11222 2333 333344 7788888888773
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.23 E-value=0.074 Score=56.70 Aligned_cols=224 Identities=8% Similarity=0.019 Sum_probs=125.5
Q ss_pred CCCCeEEEEECCCCCEEEEEe-CC----CeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeC---------
Q 003279 593 HTQWITDVRFSPSLSRLATSS-AD----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--------- 658 (834)
Q Consensus 593 h~~~I~~l~fspdg~~Latgs-~D----g~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~--------- 658 (834)
+.-.+..++++||+++++.+- .+ ..|+++|+.+++..-..+.. .....++|.+++..++++.-.
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~ 200 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCccccc
Confidence 333455678899999888543 23 37999999987753333321 223568899999888776522
Q ss_pred ------CCcEEEEECCCCcee--eEeecC---CCeeEEEEecCCCEEEEEEcC---C--eEEEEECCCCe--------EE
Q 003279 659 ------NSEIRYWSINNGSCA--GVFKCQ---SGATQMRFQPRLGRILAAAIE---N--YISILDVETQV--------CR 714 (834)
Q Consensus 659 ------Dg~I~lwDl~s~~~i--~~~~~~---~~i~~l~~sp~g~~ll~~s~d---g--~I~iwDl~t~~--------~~ 714 (834)
...|.++.+.+.... ..+... ..+..+..+.++++++..... . .+.+.|+.... ..
T Consensus 201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 280 (430)
T d1qfma1 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (430)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccccccccee
Confidence 226888888775432 333321 235567788899988765442 2 35555654321 12
Q ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCC--
Q 003279 715 LKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYE-- 787 (834)
Q Consensus 715 ~~l~~h~~~I~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs-~dg-- 787 (834)
..+......+.-+. +.++.+++... ++.|...++...........+..+...+..-.+...+.+|++.. .++
T Consensus 281 ~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~ 359 (430)
T d1qfma1 281 KLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN 359 (430)
T ss_dssp EEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred EeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEe
Confidence 22222233333332 23334444443 35777778776543222223333444455545555555666554 444
Q ss_pred eEEEEECCCCeEEEec-cCCCCeEEEEEeCCCC
Q 003279 788 TLELWNMTENKTLTLS-AHDKLVSSLAASTVNG 819 (834)
Q Consensus 788 ~I~Iwdl~~~~~~~l~-~h~~~V~~lafspdg~ 819 (834)
.|+++++.+++...+. ...+.|..+...++..
T Consensus 360 ~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~ 392 (430)
T d1qfma1 360 TLQLHDLATGALLKIFPLEVGSVVGYSGQKKDT 392 (430)
T ss_dssp EEEEEETTTCCEEEEECCCSSEEEEEECCTTCS
T ss_pred EEEEEECCCCcEEEecCCCCceEeeccCCCCCC
Confidence 7899999988776433 2334455554444444
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=97.22 E-value=0.03 Score=58.27 Aligned_cols=188 Identities=15% Similarity=0.220 Sum_probs=123.9
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEECC------CCCEEEEEeC-C---CeEEEEecCCCCceee
Q 003279 562 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP------SLSRLATSSA-D---RTVRVWDTENPDYSLR 631 (834)
Q Consensus 562 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fsp------dg~~Latgs~-D---g~I~IWDl~s~~~~i~ 631 (834)
|+..+|+....++-|++||+. |+.+..+. .+.++.|..-. ....|++++. + .+|.+|.+......+.
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~ 114 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence 355677777777789999985 77777764 34566555432 2223555552 2 3688888864433333
Q ss_pred eeccC-------CCCeEEEEE--ccC-CCcEEEEEeCCCcEEEEECC---CC----ceeeEeecCCCeeEEEEecCCCEE
Q 003279 632 TFTGH-------STTVMSLDF--HPS-KEDLLCSCDNNSEIRYWSIN---NG----SCAGVFKCQSGATQMRFQPRLGRI 694 (834)
Q Consensus 632 ~~~~h-------~~~V~sl~f--spd-g~~llasgs~Dg~I~lwDl~---s~----~~i~~~~~~~~i~~l~~sp~g~~l 694 (834)
.+... ...+..+|+ ++. +..++++...+|.+..|.+. .+ +.++.+.....+..+.+....+.|
T Consensus 115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~L 194 (353)
T d1h6la_ 115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSL 194 (353)
T ss_dssp ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEE
T ss_pred cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcE
Confidence 33221 234677777 554 44566677888999888763 22 456677778889999999999999
Q ss_pred EEEEcCCeEEEEECCC-----CeEEEEEeC--CCCCEEEEEEcC--CCC-EEEEEe--CCeEEEEEcCCC
Q 003279 695 LAAAIENYISILDVET-----QVCRLKLQG--HKNQVHSVCWNT--SGE-YLASVS--DELVRVWSIGSG 752 (834)
Q Consensus 695 l~~s~dg~I~iwDl~t-----~~~~~~l~~--h~~~I~sl~~sp--dg~-~Lasgs--Dg~I~IwDl~s~ 752 (834)
+++-++..|..++.+. ...+....+ ....+..|++-. ++. ||++++ +++..|||....
T Consensus 195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999998888887652 233333322 356778887643 333 666666 889999998764
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.20 E-value=0.059 Score=59.97 Aligned_cols=253 Identities=9% Similarity=0.042 Sum_probs=138.9
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEecc--CCCCeEEEEECC--CCCEEEEEe------CCCeEEEEecCCCCceeeeecc
Q 003279 566 LLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSP--SLSRLATSS------ADRTVRVWDTENPDYSLRTFTG 635 (834)
Q Consensus 566 ~Lasgs~Dg~I~IWd~~t~~~~~~l~~--h~~~I~~l~fsp--dg~~Latgs------~Dg~I~IWDl~s~~~~i~~~~~ 635 (834)
.++.++.|+.+.-.|.++++.+..... +...-..+.-.| -+..+++++ ..|.|+.+|..+++...+....
T Consensus 130 ~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~ 209 (573)
T d1kb0a2 130 KVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSV 209 (573)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred cEEEEecccceeeeccccccceecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeec
Confidence 577788899999999999998865532 111100111111 123445443 2468999999998764433221
Q ss_pred C------------------------------CCCe-EEEEEccCCCcEEEEEe------------------CCCcEEEEE
Q 003279 636 H------------------------------STTV-MSLDFHPSKEDLLCSCD------------------NNSEIRYWS 666 (834)
Q Consensus 636 h------------------------------~~~V-~sl~fspdg~~llasgs------------------~Dg~I~lwD 666 (834)
. ...+ ...++.++...+++..+ ....|...|
T Consensus 210 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld 289 (573)
T d1kb0a2 210 PGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALD 289 (573)
T ss_dssp CCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred cccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEec
Confidence 1 0112 12445555443332111 112577788
Q ss_pred CCCCceeeEeecC----------CCeeEEEEecCC---CEEEEEEcCCeEEEEECCCCeEEEEEeCCCCC----------
Q 003279 667 INNGSCAGVFKCQ----------SGATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQGHKNQ---------- 723 (834)
Q Consensus 667 l~s~~~i~~~~~~----------~~i~~l~~sp~g---~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~---------- 723 (834)
+++++....+... ..........++ ..++.+..+|.++++|..+++.+.........
T Consensus 290 ~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~ 369 (573)
T d1kb0a2 290 PDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGK 369 (573)
T ss_dssp TTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSC
T ss_pred ccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccccccccc
Confidence 8888888776541 112222233333 34666677899999999999887655421100
Q ss_pred -------------------------EEEEEEcCCCCEEEEEe-CC-----------------------------------
Q 003279 724 -------------------------VHSVCWNTSGEYLASVS-DE----------------------------------- 742 (834)
Q Consensus 724 -------------------------I~sl~~spdg~~Lasgs-Dg----------------------------------- 742 (834)
-..++++|+..+++... +.
T Consensus 370 ~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 449 (573)
T d1kb0a2 370 PIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAE 449 (573)
T ss_dssp EEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSS
T ss_pred eeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccC
Confidence 01246777766666543 32
Q ss_pred --------eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEE--
Q 003279 743 --------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSS-- 811 (834)
Q Consensus 743 --------~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~-- 811 (834)
.|.-||+.++ +.+-...... +...-.++-.+..|++++.|+.++.||.++|+.+ .+.. ...+..
T Consensus 450 p~~~~~~G~l~AiD~~tG---k~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~-~~~~~~~P 524 (573)
T d1kb0a2 450 PPKSKPFGRLLAWDPVAQ---KAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT-GTGVVAAP 524 (573)
T ss_dssp CCCSCCEEEEEEEETTTT---EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC-SSCCCSCC
T ss_pred CCCCCCcccEEEeCCCCC---ceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEEC-CCCccccC
Confidence 3445555555 3333322211 1111123346778888999999999999999998 3221 111111
Q ss_pred EEEeCCCC-EEEE
Q 003279 812 LAASTVNG-MVAS 823 (834)
Q Consensus 812 lafspdg~-~LaS 823 (834)
+.|..+|+ ||+.
T Consensus 525 ~ty~~~GkQYv~v 537 (573)
T d1kb0a2 525 STYMVDGRQYVSV 537 (573)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEEEECCEEEEEE
Confidence 45556787 4443
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.11 E-value=0.19 Score=51.81 Aligned_cols=186 Identities=8% Similarity=0.037 Sum_probs=105.1
Q ss_pred eEEEEECCCCCEEEEEeC------------CCeEEEEecCCCCceeeeeccCC-------CCeEEEEE--ccCCCcEEEE
Q 003279 597 ITDVRFSPSLSRLATSSA------------DRTVRVWDTENPDYSLRTFTGHS-------TTVMSLDF--HPSKEDLLCS 655 (834)
Q Consensus 597 I~~l~fspdg~~Latgs~------------Dg~I~IWDl~s~~~~i~~~~~h~-------~~V~sl~f--spdg~~llas 655 (834)
..+|+..|++..+++++. .|.|.++|+.+.......+.... -....+++ .+++...|++
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v 116 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 116 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence 345666676665555432 48899999886544332222111 12334443 4456655555
Q ss_pred Ee---CCCcEEEEECCCCc--eee--Eeec--CCCeeEEEEecCCCEEEEEEc---------------CCeEEEEECCCC
Q 003279 656 CD---NNSEIRYWSINNGS--CAG--VFKC--QSGATQMRFQPRLGRILAAAI---------------ENYISILDVETQ 711 (834)
Q Consensus 656 gs---~Dg~I~lwDl~s~~--~i~--~~~~--~~~i~~l~~sp~g~~ll~~s~---------------dg~I~iwDl~t~ 711 (834)
.. ...+|.+|++.... ... .+.. ....+.+.+..++..+++-.. -+...+|....+
T Consensus 117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~ 196 (340)
T d1v04a_ 117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 196 (340)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence 53 35578888875432 221 1221 233678888888776666311 122334444444
Q ss_pred eEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003279 712 VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 784 (834)
Q Consensus 712 ~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs 784 (834)
....... .-...+.|+++||+++|+++. .+.|++|++...........+. -....-.+.+.+.+..+++++
T Consensus 197 ~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 197 DVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp CEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEE
T ss_pred ceEEEcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCEEEEEE
Confidence 3332222 234678999999999888877 7899999998654333333332 345567788876544444444
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.93 E-value=0.26 Score=54.57 Aligned_cols=79 Identities=9% Similarity=0.037 Sum_probs=46.2
Q ss_pred CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-Eecc-CCCCeEEEEEeCCCC
Q 003279 742 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA-HDKLVSSLAASTVNG 819 (834)
Q Consensus 742 g~I~IwDl~s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~-h~~~V~~lafspdg~ 819 (834)
|.|.-+|+.++ +.+-..... .++..-.++..+..|++++.|+.++.||.++|+++ .+.. ....-.-+.|..+|+
T Consensus 466 G~l~AiD~~TG---~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~ 541 (582)
T d1flga_ 466 GSLRAMDPVSG---KVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp EEEEEECTTTC---CEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred CeEEEEcCCCC---cEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence 34666666666 333333322 12222234456778889999999999999999999 3321 111111256667886
Q ss_pred -EEEEE
Q 003279 820 -MVASA 824 (834)
Q Consensus 820 -~LaSg 824 (834)
||+..
T Consensus 542 qYv~i~ 547 (582)
T d1flga_ 542 QYLGVT 547 (582)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 55543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.77 E-value=1.3 Score=45.16 Aligned_cols=185 Identities=14% Similarity=0.080 Sum_probs=108.1
Q ss_pred eEEEEEcCCCCEEEEEeC------------CCcEEEEeCCCCeEE-EEe--ccCC-----CCeEEEEE--CCCCC-EEEE
Q 003279 555 VESCHFSPDGKLLATGGH------------DKKAVLWCTESFTVK-STL--EEHT-----QWITDVRF--SPSLS-RLAT 611 (834)
Q Consensus 555 V~sl~fSpdg~~Lasgs~------------Dg~I~IWd~~t~~~~-~~l--~~h~-----~~I~~l~f--spdg~-~Lat 611 (834)
-..|...|||..+++++. .|.|.++|+.+.+.. ..+ .+.. -....+.+ .+++. +|++
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v 116 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 116 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence 446788888877666542 389999998764322 121 1110 11233333 44565 3444
Q ss_pred Ee---CCCeEEEEecCCCCceeeee---c-cCCCCeEEEEEccCCCcEEEEEeC---------------CCcEEEEECCC
Q 003279 612 SS---ADRTVRVWDTENPDYSLRTF---T-GHSTTVMSLDFHPSKEDLLCSCDN---------------NSEIRYWSINN 669 (834)
Q Consensus 612 gs---~Dg~I~IWDl~s~~~~i~~~---~-~h~~~V~sl~fspdg~~llasgs~---------------Dg~I~lwDl~s 669 (834)
.. ...+|.+|++......+... . ......++|++..++. +++|-.. -+...+|....
T Consensus 117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~ 195 (340)
T d1v04a_ 117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 195 (340)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence 43 45688899887554333221 1 1234578888888865 5555210 12334444444
Q ss_pred CceeeEeecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCe---EEEEEeCCCCCEEEEEEcC-CCCEEEEEeC
Q 003279 670 GSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQV---CRLKLQGHKNQVHSVCWNT-SGEYLASVSD 741 (834)
Q Consensus 670 ~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~-dg~I~iwDl~t~~---~~~~l~~h~~~I~sl~~sp-dg~~LasgsD 741 (834)
++.......-...+.++++|++++|+++.. .+.|++|++.... ....+. -....-.+.+++ +|.+.+++..
T Consensus 196 ~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~lwva~~p 271 (340)
T d1v04a_ 196 NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHP 271 (340)
T ss_dssp SCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEES
T ss_pred CceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCEEEEEECC
Confidence 444444444467889999999998887776 5789999987542 222222 345567888876 5666666543
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.55 E-value=0.69 Score=47.47 Aligned_cols=182 Identities=12% Similarity=0.175 Sum_probs=108.0
Q ss_pred CcEEEEEeCCCcEEEEECCCCceeeEeecCCCeeEEEEec----C--CCEEEEEEc-C---CeEEEEECCC-CeEEEEEe
Q 003279 650 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP----R--LGRILAAAI-E---NYISILDVET-QVCRLKLQ 718 (834)
Q Consensus 650 ~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~i~~l~~sp----~--g~~ll~~s~-d---g~I~iwDl~t-~~~~~~l~ 718 (834)
..+++....++-|++||+. |+.+..+.. +.+..+..-. . ...+++++. + ..|.+|.+.. ...+..+.
T Consensus 40 ~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~-Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~ 117 (353)
T d1h6la_ 40 NSKLITTNKKSGLAVYSLE-GKMLHSYHT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSIT 117 (353)
T ss_dssp GCEEEEEETTSCCEEEETT-CCEEEECCS-SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECS
T ss_pred ccEEEEEcCcCCEEEEcCC-CcEEEeccc-CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccc
Confidence 3466677777779999996 777766653 5565555432 1 223445543 2 3677777642 22333332
Q ss_pred CC-------CCCEEEEEE--cCC-CCEEEE-Ee-CCeEEEEEcCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003279 719 GH-------KNQVHSVCW--NTS-GEYLAS-VS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLV 782 (834)
Q Consensus 719 ~h-------~~~I~sl~~--spd-g~~Las-gs-Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I~svafspdg~~L~s 782 (834)
.. ...+..+|+ ++. |.+.+. .. +|.+..|.+..... ...++.+. ....+..|++......|++
T Consensus 118 ~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~Lyi 196 (353)
T d1h6la_ 118 DPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSLYI 196 (353)
T ss_dssp CSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEEEE
T ss_pred ccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcEEE
Confidence 21 124667777 554 554444 44 78888887743221 23444444 3567999999999999999
Q ss_pred EEcCCeEEEEECCC-----CeEEE-ec--cCCCCeEEEEEeC--CCC-EE-EEEecCCcEEEeC
Q 003279 783 IGCYETLELWNMTE-----NKTLT-LS--AHDKLVSSLAAST--VNG-MV-ASASHDKCVKIWK 834 (834)
Q Consensus 783 gs~dg~I~Iwdl~~-----~~~~~-l~--~h~~~V~~lafsp--dg~-~L-aSgs~DG~I~IWd 834 (834)
+-.+..|+.++... +..+. .. .....+..|++-. ++. || ||.-.|++..|||
T Consensus 197 sEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vyd 260 (353)
T d1h6la_ 197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYE 260 (353)
T ss_dssp EETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred ecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEe
Confidence 98888887777642 22221 11 2356777777543 322 44 4444677788875
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.53 E-value=0.27 Score=48.09 Aligned_cols=216 Identities=7% Similarity=-0.037 Sum_probs=98.7
Q ss_pred cEEEEeCCCCeEEEE--eccCCCCeEEEEECCCCCEEEEEeC---------CCeEEEEecCCCCceeeeeccC-CCCeEE
Q 003279 575 KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSA---------DRTVRVWDTENPDYSLRTFTGH-STTVMS 642 (834)
Q Consensus 575 ~I~IWd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~---------Dg~I~IWDl~s~~~~i~~~~~h-~~~V~s 642 (834)
.|.+||+++.+-... +......-..+.+ ++.+++.|+. -..+.+||..+........... .....+
T Consensus 20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~ 97 (288)
T d1zgka1 20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV 97 (288)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred eEEEEECCCCeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceec
Confidence 578999988654332 2221112222222 4556666552 2357788887654322111111 111122
Q ss_pred EEEccCCCcEEEEEeCCC-----cEEEEECCCCceeeEeecCCC--eeEEEEecCCCEEEEEEcC-----CeEEEEECCC
Q 003279 643 LDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE-----NYISILDVET 710 (834)
Q Consensus 643 l~fspdg~~llasgs~Dg-----~I~lwDl~s~~~i~~~~~~~~--i~~l~~sp~g~~ll~~s~d-----g~I~iwDl~t 710 (834)
+.+ + ..+++.++.++ .+..+|..+............ -..+... ++..++.++.+ ..+..||..+
T Consensus 98 ~~~--~-~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~ 173 (288)
T d1zgka1 98 GVI--D-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPER 173 (288)
T ss_dssp EEE--T-TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred ccc--c-eeeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEEEeeccc
Confidence 222 3 33554554333 344567666543332221111 1222222 33455555543 4578889887
Q ss_pred CeEEEEEeC-CCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCCCce-EEEEEeCCCCEEEE
Q 003279 711 QVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKF-HSCVFHPTFPSLLV 782 (834)
Q Consensus 711 ~~~~~~l~~-h~~~I~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I-~svafspdg~~L~s 782 (834)
.+....-.. ......+++.. ++.+++.++ + ..+.+||..+.. ....-....... .+++. .+++.+++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~---~~~~~~~p~~r~~~~~~~-~~~~l~v~ 248 (288)
T d1zgka1 174 NEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETET---WTFVAPMKHRRSALGITV-HQGRIYVL 248 (288)
T ss_dssp TEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE---EEECCCCSSCCBSCEEEE-ETTEEEEE
T ss_pred cccccccccccccccccccce-eeeEEEecCccccccccceeeeeeccee---eecccCccCcccceEEEE-ECCEEEEE
Confidence 654322111 11111233333 344455443 3 256778877652 111111111111 22232 35666666
Q ss_pred EEcCC-----eEEEEECCCCeEEE
Q 003279 783 IGCYE-----TLELWNMTENKTLT 801 (834)
Q Consensus 783 gs~dg-----~I~Iwdl~~~~~~~ 801 (834)
|+.++ .|.+||+.+++...
T Consensus 249 GG~~~~~~~~~v~~yd~~~~~W~~ 272 (288)
T d1zgka1 249 GGYDGHTFLDSVECYDPDTDTWSE 272 (288)
T ss_dssp CCBCSSCBCCEEEEEETTTTEEEE
T ss_pred ecCCCCeecceEEEEECCCCEEEE
Confidence 66544 58899999876553
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.24 E-value=1.3 Score=41.71 Aligned_cols=210 Identities=10% Similarity=0.060 Sum_probs=113.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEeccCCCCeEEEEEC-CCCCEEEEE------eCCCeEEEEecCCCCceeeeecc
Q 003279 563 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS-PSLSRLATS------SADRTVRVWDTENPDYSLRTFTG 635 (834)
Q Consensus 563 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I~~l~fs-pdg~~Latg------s~Dg~I~IWDl~s~~~~i~~~~~ 635 (834)
+.++|+++...|.|.++-+..++.+.--+ .+|.....- +.-.++..+ -.-..|++-++..+....+.-..
T Consensus 25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~sp 101 (313)
T d2hu7a1 25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV 101 (313)
T ss_dssp TTEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTS
T ss_pred CCcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCC
Confidence 34478888889999999888776654332 233322211 111122211 11234555555533332222222
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeEeecCCC----------eeEEEEe-cCCCEEEEEEc-CCeE
Q 003279 636 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG----------ATQMRFQ-PRLGRILAAAI-ENYI 703 (834)
Q Consensus 636 h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~~~~~~~----------i~~l~~s-p~g~~ll~~s~-dg~I 703 (834)
..-.|.++++ +++.++++|+......+|-++.|+.......+.- |..+.+. +....++++.- .|.+
T Consensus 102 k~vRI~S~~y--ddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~l 179 (313)
T d2hu7a1 102 KPMRILSGVD--TGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL 179 (313)
T ss_dssp CSBEEEEEEE--CSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEE
T ss_pred ceEEEEEeee--cCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCE
Confidence 2244555555 4677888999888999999998876655443221 2222221 22222333333 4555
Q ss_pred EEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeec--------CCCceEEE
Q 003279 704 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSC--------TGNKFHSC 771 (834)
Q Consensus 704 ~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~--------~~~~I~sv 771 (834)
+|++.. .+.++.....++.+. +++- -+ ...-+|++++. ...+.. ....|.-+
T Consensus 180 ri~tpk-----------eGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~----yerve~P~kd~~sy~p~~I~~~ 243 (313)
T d2hu7a1 180 RVFDSG-----------EGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGS----VEDLELPSKDFSSYRPTAITWL 243 (313)
T ss_dssp EEECCS-----------SEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCC----EEECCCSSCHHHHHCCSEEEEE
T ss_pred EEecCC-----------CCcccceeEccCcee-eeccCCCCceEEEEEecccCc----eeeeecCcccceeecceEEEee
Confidence 555443 445566666666655 3332 22 33345776552 111111 22446667
Q ss_pred EEeCCCCEEEEEEcCCeEEEEE
Q 003279 772 VFHPTFPSLLVIGCYETLELWN 793 (834)
Q Consensus 772 afspdg~~L~sgs~dg~I~Iwd 793 (834)
-+.|+++.++++-.||.-.+|.
T Consensus 244 ~Y~Pdd~L~iiakrdG~s~lF~ 265 (313)
T d2hu7a1 244 GYLPDGRLAVVARREGRSAVFI 265 (313)
T ss_dssp EECTTSCEEEEEEETTEEEEEE
T ss_pred eeCCCCcEEEEEecCCchheee
Confidence 7999999889999999888875
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.20 E-value=2.4 Score=44.72 Aligned_cols=105 Identities=11% Similarity=0.136 Sum_probs=60.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCcee-eee------ccCCCCeEEEEEccC---CCcEEEEEe------C
Q 003279 595 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTF------TGHSTTVMSLDFHPS---KEDLLCSCD------N 658 (834)
Q Consensus 595 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i-~~~------~~h~~~V~sl~fspd---g~~llasgs------~ 658 (834)
...++|+|.||+++|++--.+|.|++++..++.... ..+ ..-......|+|+|+ ...+.++.+ .
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~ 106 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence 456799999999988876557999999877654321 111 112356789999985 233333321 0
Q ss_pred C----C--cEEEEECCCCce-----eeEee-----cCCCeeEEEEecCCCEEEEEEc
Q 003279 659 N----S--EIRYWSINNGSC-----AGVFK-----CQSGATQMRFQPRLGRILAAAI 699 (834)
Q Consensus 659 D----g--~I~lwDl~s~~~-----i~~~~-----~~~~i~~l~~sp~g~~ll~~s~ 699 (834)
+ . .|..+....... ...+. .......+.|.|++..+++.+.
T Consensus 107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd 163 (450)
T d1crua_ 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (450)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence 1 1 233333332211 01111 1234678999999887776664
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.57 E-value=0.85 Score=47.30 Aligned_cols=173 Identities=15% Similarity=0.138 Sum_probs=101.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCC-------------CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 003279 554 KVESCHFSPDGKLLATGGHDKKAVLWCTE-------------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 620 (834)
Q Consensus 554 ~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~-------------t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 620 (834)
...-+++++...+|+.|+.++ ++|..+. ..+....+ ..|..++|+.| .|+.. .++.+..
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~i----p~v~~vafs~d--~l~v~-~~~~l~~ 109 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEI----PDVIFVCFHGD--QVLVS-TRNALYS 109 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEEC----TTEEEEEEETT--EEEEE-ESSEEEE
T ss_pred ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCC----CCeEEEEeeCC--EEEEE-eCCCEEE
Confidence 456788888777888888775 5666421 11222222 25889999755 45554 4566888
Q ss_pred EecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceeeE------eecCCCeeEEEEecCCCEE
Q 003279 621 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV------FKCQSGATQMRFQPRLGRI 694 (834)
Q Consensus 621 WDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~~------~~~~~~i~~l~~sp~g~~l 694 (834)
++...-.. ..........+..+.+.|. .++.+..++.+.++++..++.... +.....+.+++|++.+..+
T Consensus 110 ~~~~~l~~-~~~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~ 185 (381)
T d1xipa_ 110 LDLEELSE-FRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQS 185 (381)
T ss_dssp EESSSTTC-EEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEE
T ss_pred EEeecccc-ccccccccccccceecCCc---eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEE
Confidence 88776332 3333334567888888875 345666789999999988764332 2224667777777777767
Q ss_pred EEEEcCCeEEE-EECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 003279 695 LAAAIENYISI-LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 739 (834)
Q Consensus 695 l~~s~dg~I~i-wDl~t~~~~~~l~~h~~~I~sl~~spdg~~Lasg 739 (834)
+++..+. ..+ -++.....+.........|.+|.|-.+..++++.
T Consensus 186 v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 186 FAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp EEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 6653221 111 1111111000001133467889998777777655
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.36 E-value=0.51 Score=45.96 Aligned_cols=202 Identities=5% Similarity=-0.094 Sum_probs=92.1
Q ss_pred eEEEEecCCCCceee-eeccCCCCeEEEEEccCCCcEEEEEeC---------CCcEEEEECCCCceeeEeecCC-CeeEE
Q 003279 617 TVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDN---------NSEIRYWSINNGSCAGVFKCQS-GATQM 685 (834)
Q Consensus 617 ~I~IWDl~s~~~~i~-~~~~h~~~V~sl~fspdg~~llasgs~---------Dg~I~lwDl~s~~~i~~~~~~~-~i~~l 685 (834)
.|.+||+.+...... .+......-..+.+ + ..+++.|+. -..+.+||..+.+....-.... .....
T Consensus 20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~ 96 (288)
T d1zgka1 20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVV--G-GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 96 (288)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEE--T-TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred eEEEEECCCCeEEECCCCCCccceeEEEEE--C-CEEEEEeCcccCCCCccccchhhhcccccccccccccccceeccee
Confidence 578999988654221 12111111122222 2 446655542 2367788887766544322111 11111
Q ss_pred EEecCCCEEEEEEcCC-----eEEEEECCCCeEEEEEeCCCC-CEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCC
Q 003279 686 RFQPRLGRILAAAIEN-----YISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGS 753 (834)
Q Consensus 686 ~~sp~g~~ll~~s~dg-----~I~iwDl~t~~~~~~l~~h~~-~I~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~ 753 (834)
+...++..++.++.++ .+..+|..+..-...-..... .-.++... ++.+++.++ + ..+..||..+..
T Consensus 97 ~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~~~ 175 (288)
T d1zgka1 97 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNE 175 (288)
T ss_dssp EEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred ccccceeeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEEEeeccccc
Confidence 2222445555554433 456677776643322111111 11122222 344444443 2 257888877652
Q ss_pred CceeEEEeecC--CCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCeEEEeccCCC-Ce-EEEEEeCCCCEEEEE
Q 003279 754 KGECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAHDK-LV-SSLAASTVNGMVASA 824 (834)
Q Consensus 754 ~~~~i~~~~~~--~~~I~svafspdg~~L~sgs~dg-----~I~Iwdl~~~~~~~l~~h~~-~V-~~lafspdg~~LaSg 824 (834)
.. ..... .....+++.. ++..++.++.++ .+.+||..+.+...+..... .. .+++ ..++++++.|
T Consensus 176 ---~~-~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~-~~~~~l~v~G 249 (288)
T d1zgka1 176 ---WR-MITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGIT-VHQGRIYVLG 249 (288)
T ss_dssp ---EE-ECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEEC
T ss_pred ---cc-cccccccccccccccce-eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEE-EECCEEEEEe
Confidence 11 11111 1111222222 344455554432 67888988887765432211 12 2233 3367888888
Q ss_pred ecCC
Q 003279 825 SHDK 828 (834)
Q Consensus 825 s~DG 828 (834)
+.++
T Consensus 250 G~~~ 253 (288)
T d1zgka1 250 GYDG 253 (288)
T ss_dssp CBCS
T ss_pred cCCC
Confidence 7654
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=93.80 E-value=2.7 Score=39.35 Aligned_cols=215 Identities=10% Similarity=0.069 Sum_probs=117.3
Q ss_pred CCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEE-ccCCCcEEEEEe-----CCCcEEEEECCCCceeeEeec
Q 003279 605 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF-HPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKC 678 (834)
Q Consensus 605 dg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~f-spdg~~llasgs-----~Dg~I~lwDl~s~~~i~~~~~ 678 (834)
+.++|+++...|.|.++-+..++. + .+. ..+|..... .+.-+.+.+.-+ .-..|.+.++...-....+..
T Consensus 25 ~d~ll~~~~seG~vni~~l~g~~~-v-kLt--kePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~s 100 (313)
T d2hu7a1 25 GDKLLVVGFSEGSVNAYLYDGGET-V-KLN--REPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEA 100 (313)
T ss_dssp TTEEEEEEEETTEEEEEEESSSSC-E-ECC--SSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTT
T ss_pred CCcEEEEEeccceEEEEEEeCCEE-E-EEe--cccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecC
Confidence 445788888899999998886553 2 111 122322211 111111111111 112344444432222222222
Q ss_pred CCCeeEEEEec-CCCEEEEEEcCCeEEEEECCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEe---CC--eEEEEEcC
Q 003279 679 QSGATQMRFQP-RLGRILAAAIENYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS---DE--LVRVWSIG 750 (834)
Q Consensus 679 ~~~i~~l~~sp-~g~~ll~~s~dg~I~iwDl~t~~~~~--~l~~h~~~I~sl~~spdg~~Lasgs---Dg--~I~IwDl~ 750 (834)
..++.-+.... +.+..++|+..+...+|-++.++... .+. .-+.|+.+ .+++++..+ .+ .+.+-|+.
T Consensus 101 pk~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vP-pFsFVtDI----~~d~I~G~g~~~g~~~sfF~adl~ 175 (313)
T d2hu7a1 101 VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-GFGFVSDI----RGDLIAGLGFFGGGRVSLFTSNLS 175 (313)
T ss_dssp SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-SCEEEEEE----ETTEEEEEEEEETTEEEEEEEETT
T ss_pred CceEEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCC-CcceEEec----cCCeEEEEeeecCCcceEEEEecc
Confidence 23333333333 34667788888888888888875433 332 22334444 366666544 22 34445665
Q ss_pred CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CC--eEEEEECCCCeEEEeccC--------CCCeEEEEEeCCCC
Q 003279 751 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YE--TLELWNMTENKTLTLSAH--------DKLVSSLAASTVNG 819 (834)
Q Consensus 751 s~~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~-dg--~I~Iwdl~~~~~~~l~~h--------~~~V~~lafspdg~ 819 (834)
++ .+..+....+.++...+.+..+. ++.-. -+ ...-+|+.+++...+.-. .-.|+-+-+.|+++
T Consensus 176 SG----~lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~ 250 (313)
T d2hu7a1 176 SG----GLRVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGR 250 (313)
T ss_dssp TE----EEEEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSC
T ss_pred cC----CEEEecCCCCcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCc
Confidence 54 45566666777888888887774 33221 11 333568888876644322 23566677999999
Q ss_pred EEEEEecCCcEEEe
Q 003279 820 MVASASHDKCVKIW 833 (834)
Q Consensus 820 ~LaSgs~DG~I~IW 833 (834)
+++.+-.||.-++|
T Consensus 251 L~iiakrdG~s~lF 264 (313)
T d2hu7a1 251 LAVVARREGRSAVF 264 (313)
T ss_dssp EEEEEEETTEEEEE
T ss_pred EEEEEecCCchhee
Confidence 99999999987776
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.75 E-value=2 Score=44.31 Aligned_cols=178 Identities=11% Similarity=0.045 Sum_probs=101.1
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCcEEEEECC-----------CCceeeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 003279 638 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-----------NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL 706 (834)
Q Consensus 638 ~~V~sl~fspdg~~llasgs~Dg~I~lwDl~-----------s~~~i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iw 706 (834)
....-+++++... ++++|+.++ +.|..+. ......... -..|..++|+.+ . ++...++.+..+
T Consensus 37 ~~~~LLAVsn~~G-Ll~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~-ip~v~~vafs~d--~-l~v~~~~~l~~~ 110 (381)
T d1xipa_ 37 ASLQNLDISNSKS-LFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-IPDVIFVCFHGD--Q-VLVSTRNALYSL 110 (381)
T ss_dssp SCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-CTTEEEEEEETT--E-EEEEESSEEEEE
T ss_pred cccceEEEeCCCC-EEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC-CCCeEEEEeeCC--E-EEEEeCCCEEEE
Confidence 3455677777644 666666564 5666532 111111222 236888899755 3 444566778888
Q ss_pred ECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeE---EEeecCCCceEEEEEeCCCCEEEEE
Q 003279 707 DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECI---HELSCTGNKFHSCVFHPTFPSLLVI 783 (834)
Q Consensus 707 Dl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i---~~~~~~~~~I~svafspdg~~L~sg 783 (834)
+...-........-..++..+.++|.. .++...++.+.++++..+...... ..+ +-...+.+++|++.|..++++
T Consensus 111 ~~~~l~~~~~~~~~~~~~~~~~~~p~~-~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~-~~~~~~~~v~ws~kgkq~v~~ 188 (381)
T d1xipa_ 111 DLEELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQLAQNVTSF-DVTNSQLAVLLKDRSFQSFAW 188 (381)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEEEEESEEEE-EECSSEEEEEETTSCEEEEEE
T ss_pred EeeccccccccccccccccceecCCce-eEEEecCCCEEEEEeccCccccccCCcceE-EecCCceEEEEeCCcEEEEEe
Confidence 887654444444445678888888753 444445999999999887432211 111 123567888888888877776
Q ss_pred EcCCeEEE-EECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEE
Q 003279 784 GCYETLEL-WNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 824 (834)
Q Consensus 784 s~dg~I~I-wdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSg 824 (834)
..+. +.+ -++.....+ ........|.+|.|-.+..++++-
T Consensus 189 ~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 189 RNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp ETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 4332 221 122211111 111234467788887666655544
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.65 E-value=5.1 Score=42.01 Aligned_cols=53 Identities=21% Similarity=0.263 Sum_probs=38.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE--ec------cCCCCeEEEEECCC
Q 003279 553 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LE------EHTQWITDVRFSPS 605 (834)
Q Consensus 553 ~~V~sl~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~--l~------~h~~~I~~l~fspd 605 (834)
..-++|+|.|||++|++--.+|.|++++..++..... +. .-......|+|+|+
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 3577999999999888765579999998877654432 21 12346789999985
|
| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: Topoisomerase IV subunit A, ParC, C-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.29 E-value=8 Score=38.55 Aligned_cols=232 Identities=8% Similarity=0.059 Sum_probs=129.2
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCe----EEEEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe---cCCCC-----ce
Q 003279 562 PDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD---TENPD-----YS 629 (834)
Q Consensus 562 pdg~~Lasgs~Dg~I~IWd~~t~~----~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD---l~s~~-----~~ 629 (834)
|+...+++-+.+|.|+--++++.+ .-..++. .+.+..+........|+.-+..|.++... +.... .+
T Consensus 3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k~-~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~p 81 (323)
T d1wp5a_ 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCcccC-CceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccccccccc
Confidence 566788888999998866543211 0011222 33455544444445666667788766554 33211 11
Q ss_pred eeeec--cCCCCeEEEE-Ecc-CCCcEEEEEeCCCcEEEEECCCC--------ceeeEeecCCCeeEEEEecCCCEEEEE
Q 003279 630 LRTFT--GHSTTVMSLD-FHP-SKEDLLCSCDNNSEIRYWSINNG--------SCAGVFKCQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 630 i~~~~--~h~~~V~sl~-fsp-dg~~llasgs~Dg~I~lwDl~s~--------~~i~~~~~~~~i~~l~~sp~g~~ll~~ 697 (834)
+..+. .....|..+. ..+ .....|+..+..|.++..++... .....+.....+..+.+......++.+
T Consensus 82 i~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~l~ 161 (323)
T d1wp5a_ 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLV 161 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEE
T ss_pred ceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhccccccccccceeccCCCeEEEEE
Confidence 21111 1233444443 322 12335667788999999987432 122233446677888888888899999
Q ss_pred EcCCeEEEEECCCC---------eEEEEEeCCCCCEEE-EEEcCCCCEEEEEe-CCeEEEEEcCCCCC----ce---eEE
Q 003279 698 AIENYISILDVETQ---------VCRLKLQGHKNQVHS-VCWNTSGEYLASVS-DELVRVWSIGSGSK----GE---CIH 759 (834)
Q Consensus 698 s~dg~I~iwDl~t~---------~~~~~l~~h~~~I~s-l~~spdg~~Lasgs-Dg~I~IwDl~s~~~----~~---~i~ 759 (834)
+..|.+..|+...- .....+. ..+.|.+ ....+++..|++.+ .|..+...+..... .. .+.
T Consensus 162 t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~-~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~~k 240 (323)
T d1wp5a_ 162 THNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILR 240 (323)
T ss_dssp ETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSC
T ss_pred EecceeeEeecccccccCcccccccccccc-cccccchhhhccccccceeeeeeeheeecccchhhcccccccccccccc
Confidence 99999999987532 2222333 2334444 44555666666666 78777766543211 01 111
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 760 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 760 ~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
........+..+....+...|+..+..|.+.-.++.
T Consensus 241 ~~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~r~~~~ 276 (323)
T d1wp5a_ 241 ELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp CCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred ccccccceeeeeEecCCCCEEEEEeCCCEEEEEEhh
Confidence 222233456666666666778888888876655543
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=90.37 E-value=8.1 Score=37.05 Aligned_cols=218 Identities=11% Similarity=0.005 Sum_probs=106.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC-ce
Q 003279 594 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SC 672 (834)
Q Consensus 594 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~-~~ 672 (834)
...|..|+-... +.+.-. ||.|+.|-...... +-.-......|..|+.- ..+.++. .|+.+..|..... ..
T Consensus 25 ~~~i~~va~G~~--h~~al~-dG~v~~wG~N~~GQ-lG~~~~~~~~v~~v~~G--~~~~~al--~dg~v~~wG~~~~gq~ 96 (273)
T d1jtdb_ 25 QSGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQ-LTMPAATQSGVDAIAAG--NYHSLAL--KDGEVIAWGGNEDGQT 96 (273)
T ss_dssp SSSEEEEEECSS--EEEEEE-TTEEEEEECCTTST-TSCCGGGGSCCCEEEEC--SSEEEEE--ETTEEEEEECCTTSTT
T ss_pred CCCcEEEEccCC--EEEEEE-CCEEEEEeCCCCCc-eeeeecccccceEEecC--CCceeee--eeeeeeccCCCcceee
Confidence 445778876422 333334 89999998765432 11112223445555542 2223332 3899999986542 21
Q ss_pred eeEeecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003279 673 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 752 (834)
Q Consensus 673 i~~~~~~~~i~~l~~sp~g~~ll~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~ 752 (834)
.........+..+..... .. +...|+.+..|.................|..++- ....++...++.++.|.....
T Consensus 97 ~~~~~~~~~~~~i~~~~~--~~-~~~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~g~~~~~G~~~~ 171 (273)
T d1jtdb_ 97 TVPAEARSGVDAIAAGAW--AS-YALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDG--GVYTALAVKNGGVIAWGDNYF 171 (273)
T ss_dssp CCCGGGGSSCCEEEEETT--EE-EEEETTEEEEEECCTTSTTSCCGGGGSSEEEEEE--CSSEEEEEETTEEEEEECCTT
T ss_pred ccccccccceeEEeeecc--cc-cccccccceecccCCCCceeeeccCCceEEEEec--cceeeeeecccceeEeecccC
Confidence 111112233444444332 22 2335788888865432111111112234544443 233444445888999976543
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEE
Q 003279 753 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVK 831 (834)
Q Consensus 753 ~~~~~i~~~~~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~ 831 (834)
... .........|..++.... +.++.. ||.|+.|=....-.+ ........|..|+-... ..++. .||.|.
T Consensus 172 g~~---~~~~~~~~~v~~Is~G~~--h~~~l~-dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~~-~~~~l--~~g~v~ 242 (273)
T d1jtdb_ 172 GQT---TVPAEAQSGVDDVAGGIF--HSLALK-DGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW-YSLAL--KNGKVI 242 (273)
T ss_dssp STT---SCCGGGSSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS-CEEEE--ETTEEE
T ss_pred Ccc---cccccccCCccceeccce--eeEEEe-cCcEEEcCCCCCCccCCCccCCCCcEEEEeCcc-eEEEE--ECCEEE
Confidence 211 111122345666655433 333333 789999965332211 11223345777765432 23443 489999
Q ss_pred Ee
Q 003279 832 IW 833 (834)
Q Consensus 832 IW 833 (834)
.|
T Consensus 243 ~W 244 (273)
T d1jtdb_ 243 AW 244 (273)
T ss_dssp EE
T ss_pred EE
Confidence 88
|
| >d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.14 E-value=0.057 Score=42.41 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhcCCCCC
Q 003279 9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTD 41 (834)
Q Consensus 9 ~~~L~~yiy~yl~k~~~~~~A~~~~~e~~~~~~ 41 (834)
++=||.-|++||..+|+.++|.+|.+|+.++.+
T Consensus 7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~ 39 (76)
T d1uuja_ 7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMN 39 (76)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCC
Confidence 346899999999999999999999999988643
|
| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: Topoisomerase IV subunit A, ParC, C-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.86 E-value=11 Score=37.61 Aligned_cols=225 Identities=12% Similarity=0.098 Sum_probs=123.2
Q ss_pred CCCCEEEEEeCCCeEEEEecCCC---CceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEE---ECCC------Cc
Q 003279 604 PSLSRLATSSADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW---SINN------GS 671 (834)
Q Consensus 604 pdg~~Latgs~Dg~I~IWDl~s~---~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lw---Dl~s------~~ 671 (834)
++...+++-+.+|.|+--++++- ...-..+. ..+.+..+........+++. +..|.++.. ++.. |.
T Consensus 3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k-~~D~v~~~~~~~t~d~ll~f-T~~Grvy~l~v~eiP~~~~~s~G~ 80 (323)
T d1wp5a_ 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLF-TNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEE-ETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCccc-CCceEEEEEEEcCCCEEEEE-ecCCEEEEEeeccCcccccccccc
Confidence 56678889999999987665420 00001112 23445555444444445544 446765544 4432 22
Q ss_pred eeeEe---ecCCCeeEEEEec---CCCEEEEEEcCCeEEEEECCCC--------eEEEEEeCCCCCEEEEEEcCCCCEEE
Q 003279 672 CAGVF---KCQSGATQMRFQP---RLGRILAAAIENYISILDVETQ--------VCRLKLQGHKNQVHSVCWNTSGEYLA 737 (834)
Q Consensus 672 ~i~~~---~~~~~i~~l~~sp---~g~~ll~~s~dg~I~iwDl~t~--------~~~~~l~~h~~~I~sl~~spdg~~La 737 (834)
.+..+ .....+..+.... ...+|+..+..|.++..++... .....+. ....+..+.+..+...++
T Consensus 81 pi~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~-~~D~l~~v~~~~~~~~i~ 159 (323)
T d1wp5a_ 81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLK-NDDQVVDVHLTDGMNELF 159 (323)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCC-TTCCEEEEEEECSCSEEE
T ss_pred cceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhcccc-ccccccceeccCCCeEEE
Confidence 32221 1233444443332 3678999999999999886432 2222333 445666676666666666
Q ss_pred EEe-CCeEEEEEcCCCCC----ceeEEEeec-CCCceE-EEEEeCCCCEEEEEEcCCeEEEEECCCCe--------EEEe
Q 003279 738 SVS-DELVRVWSIGSGSK----GECIHELSC-TGNKFH-SCVFHPTFPSLLVIGCYETLELWNMTENK--------TLTL 802 (834)
Q Consensus 738 sgs-Dg~I~IwDl~s~~~----~~~i~~~~~-~~~~I~-svafspdg~~L~sgs~dg~I~Iwdl~~~~--------~~~l 802 (834)
..+ .|.+..|+...-.. ..-+.-+.. ....+. .+.+.+++..|++.+..|..+...+..-. ...+
T Consensus 160 l~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~~ 239 (323)
T d1wp5a_ 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVIL 239 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECS
T ss_pred EEEecceeeEeecccccccCcccccccccccccccccchhhhccccccceeeeeeeheeecccchhhccccccccccccc
Confidence 666 99999998764311 111111211 233444 44556677889999999988776654321 1111
Q ss_pred --c-cCCCCeEEEEEeCCCCEEEEEecCCcEE
Q 003279 803 --S-AHDKLVSSLAASTVNGMVASASHDKCVK 831 (834)
Q Consensus 803 --~-~h~~~V~~lafspdg~~LaSgs~DG~I~ 831 (834)
. .....|.++....+...|+..+..|.+.
T Consensus 240 k~~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~ 271 (323)
T d1wp5a_ 240 RELKANPHRISGFVVAQDSDTIYLQTEKSFIE 271 (323)
T ss_dssp CCCSSSCCCEEEEEEECTTCEEEEEETTSCEE
T ss_pred cccccccceeeeeEecCCCCEEEEEeCCCEEE
Confidence 1 1233466666666666666666777653
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=86.26 E-value=6.1 Score=38.00 Aligned_cols=199 Identities=12% Similarity=-0.002 Sum_probs=92.6
Q ss_pred eEEEEecCCCCceeeeeccCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceee-EeecCCCeeEEEEecCCCEEE
Q 003279 617 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRIL 695 (834)
Q Consensus 617 ~I~IWDl~s~~~~i~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~lwDl~s~~~i~-~~~~~~~i~~l~~sp~g~~ll 695 (834)
+|++|--................|..|+.-. .+.+ ... ||.|+.|-.+..-.+. .......+..+.. ...+.+
T Consensus 5 sv~~WG~~~~~~~~~~~~~~~~~i~~va~G~--~h~~-al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~--G~~~~~ 78 (273)
T d1jtdb_ 5 SVVAWGGNNDWGEATVPAEAQSGVDAIAGGY--FHGL-ALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAA--GNYHSL 78 (273)
T ss_dssp EEEEESSCCSSSTTCCCGGGSSSEEEEEECS--SEEE-EEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEE--CSSEEE
T ss_pred EEEEECCCCCCCceeccccCCCCcEEEEccC--CEEE-EEE-CCEEEEEeCCCCCceeeeecccccceEEec--CCCcee
Confidence 5777754322211222223345677777632 2333 344 8999999876532221 1112234444443 223333
Q ss_pred EEEcCCeEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003279 696 AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 775 (834)
Q Consensus 696 ~~s~dg~I~iwDl~t~~~~~~l~~h~~~I~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~svafsp 775 (834)
+ -.|+.++.|.....-...........+..++... ...+...|+.+..|........ . ........|..++-
T Consensus 79 a-l~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~--~~~~~~~dg~v~~~g~~~~~~~-~--~~~~~~~~v~~~~~-- 150 (273)
T d1jtdb_ 79 A-LKDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA--WASYALKDGKVIAWGDDSDGQT-T--VPAEAQSGVTALDG-- 150 (273)
T ss_dssp E-EETTEEEEEECCTTSTTCCCGGGGSSCCEEEEET--TEEEEEETTEEEEEECCTTSTT-S--CCGGGGSSEEEEEE--
T ss_pred e-eeeeeeeccCCCcceeeccccccccceeEEeeec--ccccccccccceecccCCCCce-e--eeccCCceEEEEec--
Confidence 3 3589999997643210000001112333444322 2233335889999975443211 0 11111223333332
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEE-EeccCCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 003279 776 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 833 (834)
Q Consensus 776 dg~~L~sgs~dg~I~Iwdl~~~~~~-~l~~h~~~V~~lafspdg~~LaSgs~DG~I~IW 833 (834)
+.+.+....++.++.|........ ........|..|+..... .++ - .||.|+-|
T Consensus 151 -~~~~~~~~~~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G~~h-~~~-l-~dG~v~~W 205 (273)
T d1jtdb_ 151 -GVYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLA-L-KDGKVIAW 205 (273)
T ss_dssp -CSSEEEEEETTEEEEEECCTTSTTSCCGGGSSSEEEEEECSSE-EEE-E-ETTEEEEE
T ss_pred -cceeeeeecccceeEeecccCCcccccccccCCccceecccee-eEE-E-ecCcEEEc
Confidence 222333445778888876543322 222345567777654322 222 2 37888877
|
| >d1suua_ b.68.10.1 (A:) DNA gyrase A C-terminal domain {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: DNA gyrase A C-terminal domain species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=81.52 E-value=26 Score=34.18 Aligned_cols=228 Identities=8% Similarity=0.079 Sum_probs=124.7
Q ss_pred EEEEEeCCCcEEEEeCCCCeE-------E--EEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE---EecCCCCc-----
Q 003279 566 LLATGGHDKKAVLWCTESFTV-------K--STLEEHTQWITDVRFSPSLSRLATSSADRTVRV---WDTENPDY----- 628 (834)
Q Consensus 566 ~Lasgs~Dg~I~IWd~~t~~~-------~--~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I---WDl~s~~~----- 628 (834)
.+++.+.+|.|+--...+.+. + ..++.+...+..+..+ ....|+.-+..|.++. |++.....
T Consensus 3 vvv~ls~~GyiKR~~~~~~~~q~rg~~g~~~~~~k~~D~v~~~~~~~-t~d~ll~fT~~G~~~~i~~~~ip~~~~~~~G~ 81 (304)
T d1suua_ 3 IVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSRASKGQ 81 (304)
T ss_dssp EEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC-------C
T ss_pred EEEEEECCCeEEEeeHHHHhhccCCCCCcccccccCCCEEEEEEEec-CCCeEEEEechHhhcChhhhhccccccccccc
Confidence 678889999999887665432 1 2234444333444333 3445666667776554 44432211
Q ss_pred eeeee--ccCCCCeEEEEEcc--CCCcEEEEEeCCCcEEEEECCCCc-------eeeEeecCCCeeEEEEecCCCEEEEE
Q 003279 629 SLRTF--TGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGS-------CAGVFKCQSGATQMRFQPRLGRILAA 697 (834)
Q Consensus 629 ~i~~~--~~h~~~V~sl~fsp--dg~~llasgs~Dg~I~lwDl~s~~-------~i~~~~~~~~i~~l~~sp~g~~ll~~ 697 (834)
.+..+ ......|..+-..+ +....++.++.+|.|+-.++..-. ....+.....+..+.....+..++..
T Consensus 82 ~i~~l~~l~~~e~i~~~~~~~~~~~~~~l~~~T~~G~iKr~~l~~f~~~~~~~~~a~kL~~~D~lv~v~~~~~~~~v~~~ 161 (304)
T d1suua_ 82 NISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICL 161 (304)
T ss_dssp BGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTCEEEEE
T ss_pred ccceeeeeccccccccccccccccccceEEEEEehhhhhhcccchhhccccccceeecccchhhccccccccccceeEee
Confidence 11111 11223444433221 234456678889999998875321 11222335567777777778889999
Q ss_pred EcCCeEEEEECCCC---------eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC----ceeEEEee-
Q 003279 698 AIENYISILDVETQ---------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK----GECIHELS- 762 (834)
Q Consensus 698 s~dg~I~iwDl~t~---------~~~~~l~~h~~~I~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~----~~~i~~~~- 762 (834)
+..|....|+...- .....+. ....+.++...+++.+++..+ +|.++...+..-.. ..-+..+.
T Consensus 162 t~~G~~lrf~~~~v~~~gr~a~Gv~~i~L~-~~d~v~~~~~~~~~~~ll~iT~~G~gKr~~~~e~~~~~Rg~~Gv~~~k~ 240 (304)
T d1suua_ 162 SKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKK 240 (304)
T ss_dssp ETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCEECSCT
T ss_pred ccccceeeeccccccccCccccceeeeccc-ccccceeeeeccCCceEEEEecCCceEEccchhhhhhcccccccceeec
Confidence 99999988987632 1222232 334566666666666666666 88888888764311 11111111
Q ss_pred --cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003279 763 --CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 795 (834)
Q Consensus 763 --~~~~~I~svafspdg~~L~sgs~dg~I~Iwdl~ 795 (834)
.....+..+....+...|+..+..|.+.-..+.
T Consensus 241 ~~~~~~~vv~~~~v~~~d~i~l~T~~G~~~r~~~~ 275 (304)
T d1suua_ 241 SDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAG 275 (304)
T ss_dssp TCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGG
T ss_pred cccCCCcEEEEEEeCCCCEEEEEeCCCEEEEEEhh
Confidence 122445444333444567777777766555543
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