Citrus Sinensis ID: 003289

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830---

MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHRRRILICKG

cccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccHHHHHHHHHHccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccHHHcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccHHHcccc

ccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccHHHHHHHHHHHHHccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccHccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccHccccHHHHHHHHHHHHHHHHHcccccEEEcc

MELQNTVKEALNAlyhhpddavRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKkfhkgppkvrTQISIAVAALAVHIsaedwggggivNWLRdemnshpefvpGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLkhripgsvlashPLVLTALSSLHSEILSEASVNVISELIHYsaagssggatvnmpLIQVIVPQIMSLkahltdsskdEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLevashpeydiasmTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRvqypqdyqdlsLEDLKEfkhtrydlaccssstlTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVaccgnkhnewrpaEAALFCIRAISTYVSVVEAEVMPQVMAllpklpqqpqlLQTVCLTIGAYSkwfdaassdpSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTavngegslkvsaeDSLHLVEALSMVITELPQVDAKKALEMlclpvvtplqeiinqgpeilqkkhprdltvhIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKifgsdpscaSYLHNLIEALFKRTTCLLTSieeftsrpdvaddCFLLASRcirycpqlfipssvfpslvdcsmigiTVQHRRRILICKG

MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKfhkgppkvRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGpeilqkkhprdLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSieeftsrpdvADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHRRRILICKG

MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMAllpklpqqpqllqTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTaaaaalaFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHRRRILICKG

**********LNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSK******************SLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAAR***********TSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHL*********VKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGN**********RLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQG********CFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHRRRILIC**

*ELQNTVKEALNALYHHP****RMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEV**********RRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYI************SRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHRRRILICKG

MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAH********EDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGN*********RRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHRRRILICKG

*ELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSY*SF*NE*SAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHRRRILICKG

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		833	2.2.26 [Sep-21-2011]
Q9Y5L0		923	Transportin-3 OS=Homo sap	yes	no	0.901	0.813	0.257	1e-67
Q6P2B1		923	Transportin-3 OS=Mus musc	yes	no	0.901	0.813	0.255	4e-66
Q9USZ2		955	Uncharacterized protein C	yes	no	0.903	0.788	0.241	3e-49
Q99189		972	mRNA transport regulator	yes	no	0.793	0.680	0.236	2e-33
Q8K0C1		963	Importin-13 OS=Mus muscul	no	no	0.884	0.765	0.226	4e-28
A7YWD2		963	Importin-13 OS=Bos taurus	no	no	0.889	0.769	0.219	9e-28
O94829		963	Importin-13 OS=Homo sapie	no	no	0.889	0.769	0.219	2e-27
Q5R974		963	Importin-13 OS=Pongo abel	no	no	0.889	0.769	0.218	2e-27
Q9JM04		963	Importin-13 OS=Rattus nor	no	no	0.883	0.764	0.224	2e-26
Q5ZIC8		958	Importin-13 OS=Gallus gal	no	no	0.903	0.786	0.225	6e-25

>sp\|Q9Y5L0\|TNPO3_HUMAN Transportin-3 OS=Homo sapiens GN=TNPO3 PE=1 SV=3	Back alignment and function desciption

 Score =  258 bits (659), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 218/847 (25%), Positives = 389/847 (45%), Gaps = 96/847 (11%)

Query: 7   VKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRS 66
           V +A+ ALYH PD + + +A  WL + Q ++ AW+++D LL     ++E+  F +QT++ 
Sbjct: 11  VYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQ-IRQDVESCYFAAQTMKM 69

Query: 67  KVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGI 126
           K+Q    ELP+++   L+DSL T ++      P + TQ+++A+A LA+ + +  W G   
Sbjct: 70  KIQTSFYELPTDSHASLRDSLLTHIQNLKDLSPVIVTQLALAIADLALQMPS--WKG--C 125

Query: 127 VNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLT 186
           V  L ++ ++    +P  LE+LTVLPEEV +  +     RR +  ++L       +S L 
Sbjct: 126 VQTLVEKYSNDVTSLPFLLEILTVLPEEVHSRSLRIGANRRTEIIEDLAFYSSTVVSLLM 185

Query: 187 ACLHINELKEQVL----EAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNV 242
            C+      E++L        SW  L       VL S+ +    L +L  E+L +   + 
Sbjct: 186 TCVEKAGTDEKMLMKVFRCLGSWFNL------GVLDSNFMANNKLLALLFEVLQQ---DK 236

Query: 243 ISELIHYSAAGSSGGA-------TVNMPLIQVIVPQIMSLKA--HLTDSSKDEEDVKAIA 293
            S  +H +A+     A         N+PL   +   +++L+   H+  + +D + V    
Sbjct: 237 TSSNLHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTLETAYHMAVAREDLDKVLNYC 296

Query: 294 RLFADMGDSYVELIATGSDESM---LIVHALLEVASHPEYDIASMTFNFWHSLQVILTKR 350
           R+F ++ ++++E I     + +     +  LL  A HP+Y++  ++FNFW+ L   L K 
Sbjct: 297 RIFTELCETFLEKIVCTPGQGLGDLRTLELLLICAGHPQYEVVEISFNFWYRLGEHLYKT 356

Query: 351 DSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLE--DLKEFKHT 408
           +  +  G              +F++  + L+  ++   Q   D++ +  E  D  EF+  
Sbjct: 357 NDEVIHG--------------IFKAYIQRLLHALARHCQLEPDHEGVPEETDDFGEFR-- 400

Query: 409 RYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWR 468
                             + V+D++ D   ++G       LY    EG       +  W 
Sbjct: 401 ------------------MRVSDLVKDLIFLIGSMECFAQLYSTLKEG-------NPPWE 435

Query: 469 PAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVC--LTIGAYSKWFDAA 526
             EA LF + AI+     V+ E  P ++ +L  + + P+ + T     +I    +  +  
Sbjct: 436 VTEAVLFIMAAIA---KSVDPENNPTLVEVLEGVVRLPETVHTAVRYTSIELVGEMSEVV 492

Query: 527 SSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG 586
             +P  L  VL  L  G+   +  A+AAA A  +IC  CR  +  + +GL  + R+    
Sbjct: 493 DRNPQFLDPVLGYLMKGLC-EKPLASAAAKAIHNICSVCRDHMAQHFNGLLEIARSL--- 548

Query: 587 EGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKH 646
             S  +S E ++ L++  ++V+  LP     + L  LC   V  L+++++Q P       
Sbjct: 549 -DSFLLSPEAAVGLLKGTALVLARLPLDKITECLSELCSVQVMALKKLLSQEPS---NGI 604

Query: 647 PRDLTVHIDRFAYIFRYVN--------HPEAVADAIQRLWPIFKAIFDIRAWDMRTMESL 698
             D TV +DR A IFR+ N        HP      IQ +WP+     +    D R +E  
Sbjct: 605 SSDPTVFLDRLAVIFRHTNPIVENGQTHP--CQKVIQEIWPVLSETLNKHRADNRIVERC 662

Query: 699 CRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLH 758
           CR  ++AVR   +     +  ++ ++  +Y  HQ  CFLYL S ++  +G +  C   L 
Sbjct: 663 CRCLRFAVRCVGKGSAALLQPLVTQMVNVYHVHQHSCFLYLGSILVDEYGMEEGCRQGLL 722

Query: 759 NLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMI 818
           ++++AL   T  LL       + PD  DD F LA+R I+  P   + S V   ++  ++ 
Sbjct: 723 DMLQALCIPTFQLLEQQNGLQNHPDTVDDLFRLATRFIQRSPVTLLRSQVVIPILQWAIA 782

Query: 819 GITVQHR 825
             T+ HR
Sbjct: 783 STTLDHR 789

Seems to function in nuclear protein import as nuclear transport receptor. In vitro, mediates the nuclear import of splicing factor SR proteins RBM4, SFRS1 and SFRS2, by recognizing phosphorylated RS domains.
Homo sapiens (taxid: 9606)

>sp\|Q6P2B1\|TNPO3_MOUSE Transportin-3 OS=Mus musculus GN=Tnpo3 PE=1 SV=1	Back alignment and function description

>sp\|Q9USZ2\|YNR7_SCHPO Uncharacterized protein C11G11.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC11G11.07 PE=4 SV=2	Back alignment and function description

>sp\|Q99189\|MTR10_YEAST mRNA transport regulator MTR10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR10 PE=1 SV=1	Back alignment and function description

>sp\|Q8K0C1\|IPO13_MOUSE Importin-13 OS=Mus musculus GN=Ipo13 PE=2 SV=1	Back alignment and function description

>sp\|A7YWD2\|IPO13_BOVIN Importin-13 OS=Bos taurus GN=IPO13 PE=2 SV=1	Back alignment and function description

>sp\|O94829\|IPO13_HUMAN Importin-13 OS=Homo sapiens GN=IPO13 PE=1 SV=3	Back alignment and function description

>sp\|Q5R974\|IPO13_PONAB Importin-13 OS=Pongo abelii GN=IPO13 PE=2 SV=1	Back alignment and function description

>sp\|Q9JM04\|IPO13_RAT Importin-13 OS=Rattus norvegicus GN=Ipo13 PE=2 SV=1	Back alignment and function description

>sp\|Q5ZIC8\|IPO13_CHICK Importin-13 OS=Gallus gallus GN=IPO13 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		833
225457174		960	PREDICTED: transportin-3 [Vitis vinifera	0.969	0.841	0.847	0.0
449440732		968	PREDICTED: transportin-3-like [Cucumis s	0.969	0.834	0.820	0.0
356562787		960	PREDICTED: transportin-3-like isoform 1	0.969	0.841	0.825	0.0
356562789		968	PREDICTED: transportin-3-like isoform 2	0.969	0.834	0.817	0.0
356512770		959	PREDICTED: transportin-3-like isoform 1	0.968	0.841	0.820	0.0
356512772		967	PREDICTED: transportin-3-like isoform 2	0.968	0.834	0.812	0.0
255540833		967	transportin, putative [Ricinus communis]	0.969	0.835	0.792	0.0
297797229		961	hypothetical protein ARALYDRAFT_496440 [	0.966	0.837	0.743	0.0
42568712		958	armadillo/beta-catenin-like repeat-conta	0.966	0.840	0.741	0.0
357146633		964	PREDICTED: transportin-3-like [Brachypod	0.963	0.832	0.659	0.0

>gi\|225457174\|ref\|XP_002283854.1\| PREDICTED: transportin-3 [Vitis vinifera] gi\|297733855\|emb\|CBI15102.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1420 bits (3675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 700/826 (84%), Positives = 749/826 (90%), Gaps = 18/826 (2%)

Query: 1   MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFC 60
           MELQNTVKEALNALYHHPDD+VRMQADRWLQDFQ TIDAWQV+DNLLHDATSNLETLIFC
Sbjct: 1   MELQNTVKEALNALYHHPDDSVRMQADRWLQDFQRTIDAWQVSDNLLHDATSNLETLIFC 60

Query: 61  SQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAED 120
           SQTLRSKVQRD EELPSEA R L+DSLNTLLKKFHKGPPKVRTQISIAVAALAVH+ AED
Sbjct: 61  SQTLRSKVQRDFEELPSEAFRPLRDSLNTLLKKFHKGPPKVRTQISIAVAALAVHVPAED 120

Query: 121 WGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEV 180
           WG GGIV WLRDEMNSHPEF+PGFLELL VLPEEVFNYKIAARPERRRQFEKELTS+MEV
Sbjct: 121 WGDGGIVKWLRDEMNSHPEFIPGFLELLMVLPEEVFNYKIAARPERRRQFEKELTSEMEV 180

Query: 181 ALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASV 240
           AL+ LTACL+INELKEQVLEAFASWLRL+H IPG+VLASHPLVLTALSSL+SE+LSEASV
Sbjct: 181 ALNILTACLNINELKEQVLEAFASWLRLRHGIPGAVLASHPLVLTALSSLNSELLSEASV 240

Query: 241 NVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMG 300
           NV+SELIHY+ AGSSGGA+V +PLIQVIVPQ+M+LK  L DSSKDEEDVKAI RLFADMG
Sbjct: 241 NVVSELIHYTTAGSSGGASVQIPLIQVIVPQVMNLKVQLRDSSKDEEDVKAIGRLFADMG 300

Query: 301 DSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEA 360
           DSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWH+LQV LTKRD+Y+SFGNEA
Sbjct: 301 DSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHNLQVNLTKRDAYLSFGNEA 360

Query: 361 SAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTL 420
           S EAER+RRLQVFRS+YESLVSLVS RV+YP+DYQDLS EDLK+FK TRY          
Sbjct: 361 SIEAERNRRLQVFRSSYESLVSLVSSRVRYPEDYQDLSYEDLKDFKQTRY---------- 410

Query: 421 TESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGN-KHNEWRPAEAALFCIRA 479
                  AVADVLIDAASVLGG+ATLKILY+K VE VA CGN +HNEWRPAEAAL+CIRA
Sbjct: 411 -------AVADVLIDAASVLGGEATLKILYMKLVEAVASCGNEEHNEWRPAEAALYCIRA 463

Query: 480 ISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSI 539
           IS YVSVVEAEVMPQVM +LPKLP QPQLLQTVCLTIGAYSKW DAA    SI  SV+ I
Sbjct: 464 ISNYVSVVEAEVMPQVMNMLPKLPHQPQLLQTVCLTIGAYSKWLDAAPGGLSIFPSVIDI 523

Query: 540 LTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLH 599
           L SGMS SED+AAAAALAF+HICDDCRKKLCG LDGL+++Y  AVNGEG+ KV AEDSLH
Sbjct: 524 LMSGMSISEDSAAAAALAFKHICDDCRKKLCGSLDGLFHIYHRAVNGEGNFKVPAEDSLH 583

Query: 600 LVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAY 659
           LVEALSMVITELP   AKKALE LCLPVVT LQE++NQGPEIL KK  R+ TVHIDRFAY
Sbjct: 584 LVEALSMVITELPPDHAKKALEALCLPVVTSLQEVVNQGPEILDKKVAREFTVHIDRFAY 643

Query: 660 IFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGA 719
           IFRYVNHPEAVADAIQRLWPIFKAIFD+RAWDMRTMESLCRACKYAVRTS RFMGITIGA
Sbjct: 644 IFRYVNHPEAVADAIQRLWPIFKAIFDVRAWDMRTMESLCRACKYAVRTSGRFMGITIGA 703

Query: 720 ILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFT 779
           +LEEIQGLYQ H QPCFLYLSSEVIKIFGSDPSCA+YL NLIEALF  TTCLL +I EFT
Sbjct: 704 MLEEIQGLYQLHHQPCFLYLSSEVIKIFGSDPSCANYLKNLIEALFSHTTCLLKNIREFT 763

Query: 780 SRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHR 825
           +RPD+ADDCFLLASRCIRYCPQLFIPS+VFPSLVDCSMIG+TVQHR
Sbjct: 764 ARPDIADDCFLLASRCIRYCPQLFIPSAVFPSLVDCSMIGVTVQHR 809

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449440732\|ref\|XP_004138138.1\| PREDICTED: transportin-3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356562787\|ref\|XP_003549650.1\| PREDICTED: transportin-3-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|356562789\|ref\|XP_003549651.1\| PREDICTED: transportin-3-like isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|356512770\|ref\|XP_003525089.1\| PREDICTED: transportin-3-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|356512772\|ref\|XP_003525090.1\| PREDICTED: transportin-3-like isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|255540833\|ref\|XP_002511481.1\| transportin, putative [Ricinus communis] gi\|223550596\|gb\|EEF52083.1\| transportin, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|297797229\|ref\|XP_002866499.1\| hypothetical protein ARALYDRAFT_496440 [Arabidopsis lyrata subsp. lyrata] gi\|297312334\|gb\|EFH42758.1\| hypothetical protein ARALYDRAFT_496440 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|42568712|ref|NP_201066.2| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|27311605|gb|AAO00768.1| unknown protein [Arabidopsis thaliana] gi|34365727|gb|AAQ65175.1| At5g62590 [Arabidopsis thaliana] gi|110739500|dbj|BAF01659.1| hypothetical protein [Arabidopsis thaliana] gi|110741326|dbj|BAF02213.1| hypothetical protein [Arabidopsis thaliana] gi|332010246|gb|AED97629.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|357146633\|ref\|XP_003574061.1\| PREDICTED: transportin-3-like [Brachypodium distachyon]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		833
TAIR\|locus:2154159		958	MOS14 "AT5G62600" [Arabidopsis	0.495	0.431	0.794	0.0
UNIPROTKB\|Q9Y5L0		923	TNPO3 "Transportin-3" [Homo sa	0.412	0.372	0.269	3.5e-60
UNIPROTKB\|A5D7C4		923	TNPO3 "TNPO3 protein" [Bos tau	0.412	0.372	0.266	5e-60
ZFIN\|ZDB-GENE-040426-708		923	tnpo3 "transportin 3" [Danio r	0.396	0.357	0.257	5.5e-60
MGI\|MGI:1196412		923	Tnpo3 "transportin 3" [Mus mus	0.409	0.369	0.268	2e-59
RGD\|1308938		929	Tnpo3 "transportin 3" [Rattus	0.409	0.367	0.268	2e-59
FB\|FBgn0031456		932	Trn-SR "Transportin-Serine/Arg	0.457	0.408	0.245	2.3e-58
UNIPROTKB\|C9J7E5		957	TNPO3 "Uncharacterized protein	0.412	0.359	0.269	4.1e-58
UNIPROTKB\|F1SMQ0		921	TNPO3 "Uncharacterized protein	0.412	0.373	0.269	7.2e-58
UNIPROTKB\|E9PFH4		857	TNPO3 "Transportin-3" [Homo sa	0.454	0.442	0.249	3.6e-48

TAIR\|locus:2154159 MOS14 "AT5G62600" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1688 (599.3 bits), Expect = 0., Sum P(2) = 0.
 Identities = 328/413 (79%), Positives = 367/413 (88%)

Query:     1 MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFC 60
             ME QN VKEALNALYHHPDD VR+ ADRWLQ+FQ T+DAWQVADNLLHD++SNLETLIFC
Sbjct:     1 MEHQNAVKEALNALYHHPDDTVRVHADRWLQNFQGTLDAWQVADNLLHDSSSNLETLIFC 60

Query:    61 SQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAED 120
             SQTLRSKVQRD EELP  A + L+ SL TLLKKFHKGPPKVRTQISIAVAALAVH+ A D
Sbjct:    61 SQTLRSKVQRDFEELPPGAFQKLRQSLTTLLKKFHKGPPKVRTQISIAVAALAVHVPAAD 120

Query:   121 WGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEV 180
             WG GGI++WLRDEM+ HPE+VPGFLELLTVLPEE FNYKIAARP+RRRQFEKELTSQME 
Sbjct:   121 WGDGGIISWLRDEMHMHPEYVPGFLELLTVLPEETFNYKIAARPDRRRQFEKELTSQMEA 180

Query:   181 ALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASV 240
             ALS L+ACL I+ELKEQVLEAFASWLRL+H IPG+VLA HPLV  ALSSL+ + LSEASV
Sbjct:   181 ALSILSACLKISELKEQVLEAFASWLRLRHGIPGTVLACHPLVHAALSSLNCDPLSEASV 240

Query:   241 NVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMG 300
             NVISELIH++A+ SSGG +   PLIQVIVPQI+SL+AHL DSSKDEEDVKAI RLFAD+G
Sbjct:   241 NVISELIHHTASPSSGGISAQTPLIQVIVPQILSLQAHLRDSSKDEEDVKAIGRLFADVG 300

Query:   301 DSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEA 360
             DSYVELIATGSDE M+IVHALLEV +HPE+DIASMTFNFWHSLQ++LTKR+SY S G+EA
Sbjct:   301 DSYVELIATGSDEPMVIVHALLEVTAHPEFDIASMTFNFWHSLQLMLTKRESYSSLGSEA 360

Query:   361 SAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLA 413
             S E ER+RRL +F+ AY+SLVSLV FRVQYP+DYQ LS EDLKEFK TRY +A
Sbjct:   361 SIEVERNRRLHIFQPAYQSLVSLVGFRVQYPEDYQGLSYEDLKEFKQTRYAVA 413

GO:0005634 "nucleus" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0043484 "regulation of RNA splicing" evidence=IMP

UNIPROTKB\|Q9Y5L0 TNPO3 "Transportin-3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|A5D7C4 TNPO3 "TNPO3 protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-708 tnpo3 "transportin 3" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:1196412 Tnpo3 "transportin 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1308938 Tnpo3 "transportin 3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

FB\|FBgn0031456 Trn-SR "Transportin-Serine/Arginine rich" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|C9J7E5 TNPO3 "Uncharacterized protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SMQ0 TNPO3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PFH4 TNPO3 "Transportin-3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00016179001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (960 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		833
pfam08389		147	pfam08389, Xpo1, Exportin 1-like protein	4e-18
COG5101		1053	COG5101, CRM1, Importin beta-related nuclear trans	2e-05
smart00913		67	smart00913, IBN_N, Importin-beta N-terminal domain	8e-04

>gnl\|CDD\|219817 pfam08389, Xpo1, Exportin 1-like protein	Back alignment and domain information

 Score = 81.5 bits (202), Expect = 4e-18
 Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 11/152 (7%)

Query: 98  PPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFN 157
           P  +R ++++A+A LA      +W        L   ++S P      L +L VLPEE+F+
Sbjct: 1   PKFIRNKLALALAELAKQEWPSNWPT--FFPDLVSLLSSSPSGCELLLRILKVLPEEIFD 58

Query: 158 Y-KIAARPERRRQFEKELTSQMEVALSTLTACLHIN-----ELKEQVLEAFASWLRLKHR 211
           + +     +RR + +  L SQM   L  L   L  +     EL    L+   SWL     
Sbjct: 59  FSRTPLTQQRRNRLKDLLRSQMPQILELLLQILENSVSAHSELLSATLKCLGSWLS---W 115

Query: 212 IPGSVLASHPLVLTALSSLHSEILSEASVNVI 243
           IP  ++ + PL+      L    L EA+V  +
Sbjct: 116 IPIGLILNDPLLNLLFQLLSDPDLREAAVECL 147

The sequences featured in this family are similar to a region close to the N-terminus of yeast exportin 1 (Xpo1, Crm1). This region is found just C-terminal to an importin-beta N-terminal domain (pfam03810) in many members of this family. Exportin 1 is a nuclear export receptor that interacts with leucine-rich nuclear export signal (NES) sequences, and Ran-GTP, and is involved in translocation of proteins out of the nucleus. Length = 147

>gnl\|CDD\|227432 COG5101, CRM1, Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>gnl\|CDD\|197981 smart00913, IBN_N, Importin-beta N-terminal domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		833
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	100.0
KOG2021		980	consensus Nuclear mRNA export factor receptor LOS1	100.0
KOG2081		559	consensus Nuclear transport regulator [Intracellul	100.0
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	100.0
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	100.0
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	100.0
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	100.0
KOG2020		1041	consensus Nuclear transport receptor CRM1/MSN5 (im	100.0
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	100.0
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	100.0
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	99.94
COG5656		970	SXM1 Importin, protein involved in nuclear import	99.88
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	99.79
KOG1410		1082	consensus Nuclear transport receptor RanBP16 (impo	99.79
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	99.73
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	99.73
COG5657		947	CSE1 CAS/CSE protein involved in chromosome segreg	99.49
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.42
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.08
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	99.07
KOG1824		1233	consensus TATA-binding protein-interacting protein	99.0
PF03810		77	IBN_N: Importin-beta N-terminal domain; InterPro:	98.99
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	98.91
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	98.3
KOG1824		1233	consensus TATA-binding protein-interacting protein	98.22
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	98.02
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	97.99
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.98
KOG1242		569	consensus Protein containing adaptin N-terminal re	97.81
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.51
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	97.3
PTZ00429		746	beta-adaptin; Provisional	96.48
KOG1242		569	consensus Protein containing adaptin N-terminal re	96.33
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.23
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	95.92
KOG0212		675	consensus Uncharacterized conserved protein [Funct	95.91
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	95.9
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	95.75
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	95.69
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	95.62
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	95.23
smart00802		107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	95.15
PTZ00429		746	beta-adaptin; Provisional	95.04
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	94.93
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	94.81
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	94.78
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	94.54
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	94.42
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	94.32
PF08064		107	UME: UME (NUC010) domain; InterPro: IPR012993 This	94.13
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	94.0
KOG0212		675	consensus Uncharacterized conserved protein [Funct	93.97
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	93.41
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	93.33
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	93.28
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	93.09
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	92.72
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	92.64
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	92.21
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	92.18
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	91.4
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	91.36
PRK09687		280	putative lyase; Provisional	90.68
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	90.59
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	90.05
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	90.01
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	89.87
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	89.77
PF08167		165	RIX1: rRNA processing/ribosome biogenesis	89.15
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	89.12
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	88.84
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	88.49
PRK09687		280	putative lyase; Provisional	88.14
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	87.97
PF10274		183	ParcG: Parkin co-regulated protein; InterPro: IPR0	87.01
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	86.82
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	86.34
PF08623		169	TIP120: TATA-binding protein interacting (TIP20);	85.59
KOG2956		516	consensus CLIP-associating protein [General functi	85.2
KOG4541		748	consensus Nuclear transport receptor exportin 4 (i	84.98
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	84.87
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	84.56
KOG2256		661	consensus Predicted protein involved in nuclear ex	83.24
PF08064		107	UME: UME (NUC010) domain; InterPro: IPR012993 This	82.47
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	82.2
KOG1967		1030	consensus DNA repair/transcription protein Mms19 [	81.44
KOG2213		460	consensus Apoptosis inhibitor 5/fibroblast growth	80.61
KOG4653		982	consensus Uncharacterized conserved protein [Funct	80.57
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	80.48

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=8.7e-77  Score=640.46  Aligned_cols=779  Identities=20%  Similarity=0.330  Sum_probs=641.1

Q ss_pred             hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcCCCCCChhhHHH
Q 003289            3 LQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG   82 (833)
Q Consensus         3 ~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~   82 (833)
                      .+++|++++..+|++++++..+.+++||++.|++|.+|.++++|++. ++..++|||||.||+.||+++|++++++++..
T Consensus         5 ~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~-~k~~evqyFGAltL~~ki~~~~e~~~~~~~~q   83 (982)
T KOG2022|consen    5 LIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQP-DKSSEVQYFGALTLHDKINTRWEECPANEAVQ   83 (982)
T ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCC-CchhHHHHHhHHHHHHHHHhhhccCChhHHHH
Confidence            38999999999999999999999999999999999999999999985 67889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC--CC-----CcHHHHHHHHhhchhhc
Q 003289           83 LQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS--HP-----EFVPGFLELLTVLPEEV  155 (833)
Q Consensus        83 lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~--~~-----~~~~~~L~iL~~l~Ee~  155 (833)
                      |+..++..+..++.+|+.|.+|+|.++|.+++++-++.||+  .+.+++..+..  +|     -.+..+|+.|+.+|+|.
T Consensus        84 L~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~--ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~p~e~  161 (982)
T KOG2022|consen   84 LKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPT--AIQDVIPTLQGQASPLVLADINCEILLEVLSFMPAEF  161 (982)
T ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCc--hHHHHHHHHhcccCccccchhhHHHHHHHhccCcHhh
Confidence            99999999999999999999999999999999998899999  78888887765  33     24688999999999999


Q ss_pred             ccccccCChhHHHHHHHHHHHHHHHHHHHHHhhhhhh----------HHHHHHHHHHHHHhhccCCCCccccccchhHHH
Q 003289          156 FNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----------ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLT  225 (833)
Q Consensus       156 ~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----------~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~  225 (833)
                      .+.++  +-.||..++.+|......+..++..++...          -....+++|+.+|+.+. ..+.  .....+++.
T Consensus       162 q~~~l--~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i-~~~~--~~c~~i~~~  236 (982)
T KOG2022|consen  162 QHVTL--PLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYI-SLTG--MDCDQITQV  236 (982)
T ss_pred             hhccc--hhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHh-cccc--ccHHHHHHH
Confidence            87665  356788999999999999998888887653          24578999999999953 2332  333456666


Q ss_pred             HHhccCC-----------------cchHHHHHHHHHHHHhhhcc-CCCCCCCCchhHHHHHHHHHHh--hH--HHhhhcc
Q 003289          226 ALSSLHS-----------------EILSEASVNVISELIHYSAA-GSSGGATVNMPLIQVIVPQIMS--LK--AHLTDSS  283 (833)
Q Consensus       226 ~~~~L~~-----------------~~~~~~a~~~l~~ii~~~~~-~~~~~~~~~~~~i~~l~~~~~~--l~--~~l~~~~  283 (833)
                      ++..++.                 ..+++..+......+..... ..+    +....+-.++.+.+.  ..  +...+++
T Consensus       237 ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~----nti~~li~i~~~~l~e~~~~~~~~e~~d  312 (982)
T KOG2022|consen  237 LLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYR----NTITLLISICLGILQEVSGKIQEEENAD  312 (982)
T ss_pred             HHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhcc----chHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            6666651                 11222222222222211110 000    112222233333222  11  2222333


Q ss_pred             CCHHHHHHHHHHHHHHhhHHHHHHHcCC------chhHHHHHHHHhhhcCCC-----cchhhhhHHHHHHHHHHHhhccc
Q 003289          284 KDEEDVKAIARLFADMGDSYVELIATGS------DESMLIVHALLEVASHPE-----YDIASMTFNFWHSLQVILTKRDS  352 (833)
Q Consensus       284 ~d~~~~~~l~~l~~~~~~~~~~~l~~~~------~~~~~~l~~ll~~~~~~~-----~~v~~~~l~fw~~l~~~~~~~~~  352 (833)
                      ..+|....++++++..++++.+.+.+..      +.+.++++.++.+++.|+     +.+|..++.||+++.+++.... 
T Consensus       313 ~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~-  391 (982)
T KOG2022|consen  313 ASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTI-  391 (982)
T ss_pred             chhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhh-
Confidence            3367778999999999999888776422      346788999999999884     6789999999999999886421 


Q ss_pred             ccccCcccchHHHHHHHHHHhHHHHHHHHHHHHhhccCCCC--CCCCChhhhHHhHhhhhcccccCCccchhhhhhhchh
Q 003289          353 YISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVA  430 (833)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d--~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~  430 (833)
                           ++    +.+.+.+..-+++|.+++++++.|+.+|.+  +..|+.|+++.|+.||+|                 ++
T Consensus       392 -----~e----~~~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~d-----------------iS  445 (982)
T KOG2022|consen  392 -----NE----TQQIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKD-----------------IS  445 (982)
T ss_pred             -----hc----cCCcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHH-----------------HH
Confidence                 11    111223333349999999999999999974  678999999999999999                 99


Q ss_pred             HHHHHHHhhcChhHHHHHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhccCCC---ChHH
Q 003289          431 DVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLP---QQPQ  507 (833)
Q Consensus       431 d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~~l~---~~~~  507 (833)
                      |+++++|+++| +.++..+++.+.+.+..+...+.+|.+.|+++|++.++++.+..+++..++.+|+...+.+   .+|.
T Consensus       446 D~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~q  524 (982)
T KOG2022|consen  446 DLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQ  524 (982)
T ss_pred             HHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChh
Confidence            99999999999 8899999999998876544346789999999999999999999999999999999886543   1799


Q ss_pred             HHHHHHHHHHhchHHHhhCCCChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCc
Q 003289          508 LLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGE  587 (833)
Q Consensus       508 v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~  587 (833)
                      +..|+..+||.++.|+..||.   ++++.++.+++++++++ ....|...+.++|++|+.+|.||.++++..+..+++..
T Consensus       525 l~~Tss~~igs~s~~l~e~P~---~ln~sl~~L~~~Lh~sk-~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~  600 (982)
T KOG2022|consen  525 LLSTSSDLIGSLSNWLGEHPM---YLNPSLPLLFQGLHNSK-ESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKS  600 (982)
T ss_pred             HHHHHHHHHHHHHHHHhcCCc---ccCchHHHHHHHhcCch-HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhccc
Confidence            999999999999999999997   99999999999999988 78888888999999999999999999999999998864


Q ss_pred             CCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCCc
Q 003289          588 GSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHP  667 (833)
Q Consensus       588 ~~~~l~~~~~~~l~eai~~vi~~~~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  667 (833)
                         .+.++++.++|.+||+|++...+|++.+|+.++++|+++.++.++....+.++  +......-+.+++.+|.+...+
T Consensus       601 ---~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e--~~l~~~~~l~~iS~LftSL~~~  675 (982)
T KOG2022|consen  601 ---NAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQE--NHLRIAFQLNTISALFTSLINK  675 (982)
T ss_pred             ---ccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHH--HHHHHHHHHHHHHHHHhccCCC
Confidence               57789999999999999999999999999999999999999999876654322  2333455678999999886421


Q ss_pred             ------------------ccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHH
Q 003289          668 ------------------EAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFM-GITIGAILEEIQGLY  728 (833)
Q Consensus       668 ------------------~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~~~~-~~~l~~l~~~l~~~~  728 (833)
                                        .|++.+.++++|++..+++.+.++.+|+|++|..+++.++..++.+ .|++|.++.++.. |
T Consensus       676 ~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r-~  754 (982)
T KOG2022|consen  676 KDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR-F  754 (982)
T ss_pred             CccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHH-h
Confidence                              2678899999999999999999999999999999999998877666 8999999999988 9


Q ss_pred             hhcCCccHhhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhhcccccCCcCCchHHHHHHHHHHHHhhCCCccCC-cC
Q 003289          729 QQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIP-SS  807 (833)
Q Consensus       729 ~~~~~~~~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~~~~~p~~~~~-~~  807 (833)
                      .+.+...-+.+..+++..+..++.+.+...+.+...++.++-++++.. +.++||+...+++|++.++++.|+.+.+ ..
T Consensus       755 ~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~-f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~  833 (982)
T KOG2022|consen  755 LTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHP-FSNQPDIYLQLIGFVRQILKKIPKFLEPSML  833 (982)
T ss_pred             ccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccC-CCCCchHHHHHHHHHHHHHHhCcCccccchH
Confidence            988888889999999998888888999999999999999998888733 7999999999999999999999999987 45


Q ss_pred             CcHHH-HHHHHHcccccCchhhhhhc
Q 003289          808 VFPSL-VDCSMIGITVQHRRRILICK  832 (833)
Q Consensus       808 ~l~~~-~~~~~~~l~~~~~~~~~~~~  832 (833)
                      .+.++ +.|++..|+.+++...+|+-
T Consensus       834 ~~ts~i~~~a~~ll~~pE~~~i~aa~  859 (982)
T KOG2022|consen  834 AFTSLILICAFILLNSPEPTTIRAAS  859 (982)
T ss_pred             HHHHHHHHHHHHhcCCCccHHHHHHH
Confidence            56665 45999999999999998863

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>PF08167 RIX1: rRNA processing/ribosome biogenesis	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []	Back alignment and domain information

>KOG2956 consensus CLIP-associating protein [General function prediction only]	Back alignment and domain information

>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]	Back alignment and domain information

>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		833
2xwu_B		963	Crystal Structure Of Importin 13 - Ubc9 Complex Len		2e-24
2x1g_F		971	Crystal Structure Of Importin13 - Mago-Y14 Complex		1e-22
2x19_B		963	Crystal Structure Of Importin13 - Rangtp Complex Le		1e-19

>pdb|2XWU|B Chain B, Crystal Structure Of Importin 13 - Ubc9 Complex Length = 963

Back alignment and structure

Iteration: 1

Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 188/847 (22%), Positives = 358/847 (42%), Gaps = 110/847 (12%) Query: 6 TVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLH-DATSNLETLIFCSQTL 64 V++AL+ LY+ P+ + A +WL Q + AW + LL D ++ F + L Sbjct: 25 NVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQ--YFGASAL 82 Query: 65 RSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDW--G 122 K+ R ++P++ L+ L T + +F G V T++ +A+A+LA+ + + W Sbjct: 83 HIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCA 142 Query: 123 GGGIVNWLRDEMNSHPEFVPG----FLELLTVLPEEVFNYKIAARPERRRQFEK-ELTSQ 177 +V + E P G LELLTVLPEE ++ + P+ R+ + L + Sbjct: 143 VADMVRLFQAE--DSPVDGQGRCLALLELLTVLPEE---FQTSRLPQYRKGLVRTSLAVE 197 Query: 178 MEVALSTLTACLHINE----LKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE 233 L L ++++VL+ F+SW++L+ +P + L+ A ++L Sbjct: 198 CGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLE--VP--LQDCEALIQAAFAALQDS 253 Query: 234 ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDS--SKDEEDVKA 291 L ++SV I I S A + + ++P ++ L+ L + + D E Sbjct: 254 ELFDSSVEAIVNAI------SQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHG 307 Query: 292 IARLFADMGDSYVELIATGSD--ESML-IVHALLEVASHPEY-----DIASMTFNFWHSL 343 I R+ +G+++ + + +S L +V+ ++ P + +S+T FW++L Sbjct: 308 ICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTL 367 Query: 344 QVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLED 401 Q D +SF E A + QV+R Y LV ++ + Q+P D Y S ++ Sbjct: 368 Q------DDILSFEAEKQAVYQ-----QVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDE 416 Query: 402 LKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCG 461 ++F+ R D ++D L+ +LG + L LY K + Sbjct: 417 KEQFRIYRVD-----------------ISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSE 458 Query: 462 NKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMAXXXXXXXXXXXXX-TVCLTIGAYS 520 ++ W+ EA L+ ++I+ + V ++V+P ++ TV TIGA S Sbjct: 459 EPYS-WQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALS 517 Query: 521 KWFDAASSDPSILASVLSILTSGMSTSEDTXXXXXXXFRHICDDCRKKLCGYLDGLYNVY 580 +W + P ++ SVL ++ + E + IC +C+ L Y + V Sbjct: 518 EWL---ADHPVMINSVLPLVLHALGNPE-LSVSSVSTLKKICRECKYDLPPYAANIVAVS 573 Query: 581 RTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPE 640 + + + + L++AL +++ L + K L L P + L+++ + P Sbjct: 574 QDVLMKQIH---KTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPN 630 Query: 641 ILQKKHPRDLTVHI------------------DRFAYIFRYVNHPEAVADAIQRLWPIFK 682 K VHI D R + P+ + L +F+ Sbjct: 631 PSNKLA----IVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ 686 Query: 683 AIFDIRA-W--DMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYL 739 I + + W D + +E++C + +V+T + + E + +Y Q L L Sbjct: 687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDL 746 Query: 740 SSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSR--PDVADDCFLLASRCIR 797 + +++ IF +P+ IEALF T + ++ + R PD+ D L ++ ++ Sbjct: 747 TRQLVHIFAHEPAH----FPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALK 802 Query: 798 YCPQLFI 804 P LF+ Sbjct: 803 RKPDLFL 809

PyMOL of 2xwu

>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex Length = 971

Back alignment and structure

>pdb|2X19|B Chain B, Crystal Structure Of Importin13 - Rangtp Complex Length = 963

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		833
2x19_B		963	Importin-13; nuclear transport, protein transport;	1e-121
2x1g_F		971	Cadmus; transport protein, developmental protein,	1e-115
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	3e-92
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	2e-78
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	7e-69
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	2e-42
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	6e-19
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-18
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	5e-12
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	5e-09
1qgr_A		876	Protein (importin beta subunit); transport recepto	2e-07
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	2e-04

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963	Back alignment and structure

 Score =  388 bits (996), Expect = e-121
 Identities = 171/858 (19%), Positives = 355/858 (41%), Gaps = 87/858 (10%)

Query: 5   NTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTL 64
             V++AL+ LY+ P+   +  A +WL   Q +  AW  +  LL       E   F +  L
Sbjct: 24  ENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQP-DKVPEIQYFGASAL 82

Query: 65  RSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGG- 123
             K+ R   ++P++    L+  L T + +F  G   V T++ +A+A+LA+ +  + W   
Sbjct: 83  HIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCA 142

Query: 124 -GGIVNWLR--DEMNSHPEFVPGFLELLTVLPEEVFNYKI--AARPERRRQFEKELTSQM 178
              +V   +  D            LELLTVLPEE    ++    +   R     E  +  
Sbjct: 143 VADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVF 202

Query: 179 EVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEA 238
            +    L      + ++++VL+ F+SW++L+  +         L+  A ++L    L ++
Sbjct: 203 PLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQ----DCEALIQAAFAALQDSELFDS 258

Query: 239 SVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDS--SKDEEDVKAIARLF 296
           SV  I   I      S   A   +  +  ++P ++ L+  L  +  + D E    I R+ 
Sbjct: 259 SVEAIVNAI------SQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIA 312

Query: 297 ADMGDSYVELIATGSDES---MLIVHALLEVASHPEY-----DIASMTFNFWHSLQVILT 348
             +G+++   +    +     + +V+ ++     P +       +S+T  FW++LQ  + 
Sbjct: 313 VALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDIL 372

Query: 349 KRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFK 406
             ++            +++   QV+R  Y  LV ++  + Q+P D  Y   S ++ ++F+
Sbjct: 373 SFEAE-----------KQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFR 421

Query: 407 HTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNE 466
             R D                 ++D L+    +LG +  L  LY K    +     +   
Sbjct: 422 IYRVD-----------------ISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSS-EEPYS 462

Query: 467 WRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQ-PQLLQTVCLTIGAYSKWFDA 525
           W+  EA L+  ++I+  + V  ++V+P ++ L+P++     QL  TV  TIGA S+W   
Sbjct: 463 WQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWL-- 520

Query: 526 ASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 585
            +  P ++ SVL ++   +   E  + ++    + IC +C+  L  Y   +  V +  + 
Sbjct: 521 -ADHPVMINSVLPLVLHALGNPEL-SVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLM 578

Query: 586 GEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKK 645
            +          + L++AL  +++ L   +  K L  L  P +  L+++  + P    K 
Sbjct: 579 KQ---IHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKL 635

Query: 646 HPRDLTVHIDRFAYIFRYVNH-----------------PEAVADAIQRLWPIFKAIFDIR 688
               +   +          +H                 P  V   +Q+++ + + +    
Sbjct: 636 AIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKW 695

Query: 689 AWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFG 748
             D + +E++C   + +V+T        +  + E +  +Y    Q   L L+ +++ IF 
Sbjct: 696 LNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFA 755

Query: 749 SDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSV 808
            +P+    +  L   +   T  L    +     PD+ D    L ++ ++  P LF+   +
Sbjct: 756 HEPAHFPPIEALFLLVTSVTLTLFQ--QGPRDHPDIVDSFMQLLAQALKRKPDLFLCERL 813

Query: 809 -FPSLVDCSMIGITVQHR 825
              ++  C+++ +     
Sbjct: 814 DVKAVFQCAVLALKFPEA 831

PyMOL of 2x19

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		833
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	100.0
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	100.0
2x1g_F		971	Cadmus; transport protein, developmental protein,	100.0
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	100.0
2x19_B		963	Importin-13; nuclear transport, protein transport;	100.0
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	100.0
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	100.0
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	100.0
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	100.0
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	100.0
1qgr_A		876	Protein (importin beta subunit); transport recepto	100.0
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	99.92
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.77
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.64
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	99.58
1qgr_A		876	Protein (importin beta subunit); transport recepto	99.5
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	99.25
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.24
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	99.11
1w9c_A		321	CRM1 protein, exportin 1; nuclear protein, nuclear	98.45
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	98.33
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.28
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.28
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	98.23
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	98.13
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.01
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.8
2x1g_F		971	Cadmus; transport protein, developmental protein,	97.78
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.64
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.4
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	97.33
2x19_B		963	Importin-13; nuclear transport, protein transport;	97.19
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	97.07
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.02
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	96.85
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	96.79
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	96.78
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	96.62
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	96.58
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	96.53
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	96.5
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	96.4
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	96.33
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	96.3
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	95.95
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	95.88
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	95.48
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	95.36
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	95.21
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	95.11
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	94.54
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	94.2
3u0r_A		507	Apoptosis inhibitor 5; heat repeat, armadillo repe	93.92
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	93.9
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	93.27
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	93.23
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	93.23
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	92.95
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	92.79
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	92.67
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	92.67
1w9c_A		321	CRM1 protein, exportin 1; nuclear protein, nuclear	91.69
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	91.61
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	90.92
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	90.65
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	89.79
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	89.73
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	88.88
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	85.51
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	81.28
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	80.44

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

Probab=100.00  E-value=9.5e-84  Score=778.82  Aligned_cols=771  Identities=14%  Similarity=0.214  Sum_probs=621.8

Q ss_pred             HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCC-chHHHHHHHHHHHHHhhcCCCCCChh---
Q 003289            4 QNTVKEALNALYHH-PDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATS-NLETLIFCSQTLRSKVQRDVEELPSE---   78 (833)
Q Consensus         4 ~~~v~~al~~ly~~-~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~-~~~vrffaa~~L~~ki~~~w~~l~~~---   78 (833)
                      .++|.+||+..|++ +|++.|++|++||++||++|++|++|..+|.+++. ++++||||+++|+++|+    .++++   
T Consensus         5 ~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l~~e~~~   80 (980)
T 3ibv_A            5 AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----EWNNESNL   80 (980)
T ss_dssp             HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HCCTTTSH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----hCChhhhH
Confidence            68999999765554 69999999999999999999999999999986433 78999999999999999    79999   


Q ss_pred             -hHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-C-CcHHHHHHHHhhchh
Q 003289           79 -AVRGLQDSLNTLLKKFH--KGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-P-EFVPGFLELLTVLPE  153 (833)
Q Consensus        79 -~~~~lr~~Ll~~l~~~~--~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~~-~-~~~~~~L~iL~~l~E  153 (833)
                       ++..||+.|++++.+..  .+|++||+|+|.+++.++++.+|..||+  +++++++.++++ + .....+|++|..|+|
T Consensus        81 ~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~--~i~~l~~~~~~~~~~~~~~~~LriL~~i~E  158 (980)
T 3ibv_A           81 LELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWND--FFASLQGVIAASSQSEFSNFYLKVLLSIGD  158 (980)
T ss_dssp             HHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTT--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCch--HHHHHHHHhcCCChhHHHHHHHHHHHHhHH
Confidence             99999999999999854  4688999999999999999999999999  999999988753 3 235667888888889


Q ss_pred             hcccccccCCh---hHHHHHHHHHHHH-----HHHHHHHHHhhhh--hhHHHHHHHHHHHHHhhccCCCCccccccchhH
Q 003289          154 EVFNYKIAARP---ERRRQFEKELTSQ-----MEVALSTLTACLH--INELKEQVLEAFASWLRLKHRIPGSVLASHPLV  223 (833)
Q Consensus       154 e~~~~~~~~~~---~~r~~l~~~l~~~-----~~~vl~~l~~~l~--~~~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll  223 (833)
                      |+.+.++..+.   .|+.++++.|.++     .+.+++++.++.+  ++++...+|+|+.+|+.|   +|.+.+.+.+++
T Consensus       159 Ev~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll  235 (980)
T 3ibv_A          159 EIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSW---ININLIVNEPCM  235 (980)
T ss_dssp             HHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHHH
T ss_pred             HHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhh---cCHHhhhcchHH
Confidence            99876543332   4666788888776     5556666666553  346889999999999998   677778889999


Q ss_pred             HHHHhccCCcchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhh---hccCCHHHHHHHHHHHHHHh
Q 003289          224 LTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLT---DSSKDEEDVKAIARLFADMG  300 (833)
Q Consensus       224 ~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~---~~~~d~~~~~~l~~l~~~~~  300 (833)
                      +.+|+.|++++++++|++||.+|+++++.+     +++.++++.+     ++.+.+.   .+++|.|+.+++|++++++|
T Consensus       236 ~~l~~~L~~~~~r~~A~ecL~ei~~k~~~~-----~~k~~li~~l-----~L~~~~~~l~~~~~D~d~~~~la~L~~~~g  305 (980)
T 3ibv_A          236 NLLYSFLQIEELRCAACETMTEIVNKKMKP-----LEKLNLLNIL-----NLNLFFSKSQEQSTDPNFDEHVAKLINAQG  305 (980)
T ss_dssp             HHHHHHTTSHHHHHHHHHHHHHHHHSCCCH-----HHHHHHHHHH-----HHHHHHCC-----CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHcCCCh-----hhHHHHHHHH-----hHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988742     3556666543     2333332   22578899999999999999


Q ss_pred             hHHHHHHHcCC------------chhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHhhcccccccCcccchHHHHHH
Q 003289          301 DSYVELIATGS------------DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSR  368 (833)
Q Consensus       301 ~~~~~~l~~~~------------~~~~~~l~~ll~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~  368 (833)
                      +.+... .+.+            +.+..+++++|.+++|++++|+..+++||..+.+...+.+.             +..
T Consensus       306 e~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~-------------~~~  371 (980)
T 3ibv_A          306 VELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESS-------------SKE  371 (980)
T ss_dssp             HHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTT-------------SCC
T ss_pred             HHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccc-------------ccc
Confidence            999888 6655            34668899999999999999999999999999876643110             001


Q ss_pred             HHHHhHHHHHHHHHHHHhhccCCCCCCCCCh----hhhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcChhH
Q 003289          369 RLQVFRSAYESLVSLVSFRVQYPQDYQDLSL----EDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDA  444 (833)
Q Consensus       369 ~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~----d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~  444 (833)
                      ..+.++|++.+|+.+++.||+||++.+ |++    ||.++|.+||++                 ++ .+.+++.++|++.
T Consensus       372 ~~~~~~~~l~~Ll~~li~k~~yp~d~~-~~~~~d~ed~~~F~e~Rk~-----------------l~-~l~d~~~~l~~~~  432 (980)
T 3ibv_A          372 LSASLKEFLKSLLEAIIKKMKYDESQE-WDDDPDSEEEAEFQEMRKK-----------------LK-IFQDTINSIDSSL  432 (980)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTSCCTTCC-CCCCSSSSTHHHHHHHHHH-----------------HH-HHHHHHHHHCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHccCCCccc-cccccchhHHHHHHHHHHH-----------------HH-HHHHHHHhcChHH
Confidence            235788999999999999999998753 543    667899999999                 88 8899999999999


Q ss_pred             HHHHHHHHHHHhHhhcC--CCCCCcchhhHHHHHHHHhhcccCcc------ccccHHHHHhhccC-----C--CChHHHH
Q 003289          445 TLKILYIKFVEGVACCG--NKHNEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPK-----L--PQQPQLL  509 (833)
Q Consensus       445 ~l~~l~~~l~~~~~~~~--~~~~~w~~~Eaal~~l~~i~e~~~~~------~~~~l~~l~~~l~~-----l--~~~~~v~  509 (833)
                      +++++++.+...+.+..  ..+.+|+++||+||+++++||++...      .++.++++++.+..     +  +.||.||
T Consensus       433 ~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~  512 (980)
T 3ibv_A          433 FSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQ  512 (980)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHH
Confidence            99955555554433211  11457999999999999999999852      23456666665432     2  3599999


Q ss_pred             HHHHHHHHhchHHHhhCCCChhhHHHHHHHHHh--ccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcC
Q 003289          510 QTVCLTIGAYSKWFDAASSDPSILASVLSILTS--GMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG  586 (833)
Q Consensus       510 ~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~--~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~  586 (833)
                      .++|+++|||++|+..||+   ++++++++++.  |+++++ +|+.+||++|.+||++|+++|.||++.|++.+.+++..
T Consensus       513 ~~~~~~l~rys~~~~~~~~---~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~  589 (980)
T 3ibv_A          513 LLYMEILVRYASFFDYESA---AIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNI  589 (980)
T ss_dssp             HHHHHHHHHTGGGGGTCCT---THHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCC
T ss_pred             HHHHHHHHHHHHHHhcCch---hHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcC
Confidence            9999999999999999997   99999999999  998764 59999999999999999999999999999999998874


Q ss_pred             cCCCCC----------------CHhhHHHHHHHHHHHHhcC--ChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccc-cCc
Q 003289          587 EGSLKV----------------SAEDSLHLVEALSMVITEL--PQVDAKKALEMLCLPVVTPLQEIINQGPEILQK-KHP  647 (833)
Q Consensus       587 ~~~~~l----------------~~~~~~~l~eai~~vi~~~--~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~-~~~  647 (833)
                      .....-                ..+++.++|||+|.+++..  |.++...+++.++.|++++++++++...++.++ ...
T Consensus       590 ~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i  669 (980)
T 3ibv_A          590 SVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISV  669 (980)
T ss_dssp             CCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHH
T ss_pred             cCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHH
Confidence            210000                2457999999999999875  567788999999999999999999865432111 122


Q ss_pred             hhhhHHHHHHHHhhhccC-CcccHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 003289          648 RDLTVHIDRFAYIFRYVN-HPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQG  726 (833)
Q Consensus       648 ~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~il~~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~  726 (833)
                      .+...+++.+++.|+..+ .++|+..+++++|+++..+++.|+.+..|+|++|.++++++.++|+.+.|++|.+++.++.
T Consensus       670 ~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~  749 (980)
T 3ibv_A          670 YCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLN  749 (980)
T ss_dssp             HHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHh
Confidence            344456666666666543 2467889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCccHhhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhhcccc----cCCcCCchHHHHHHHHHHHHhh-CCC
Q 003289          727 LYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIE----EFTSRPDVADDCFLLASRCIRY-CPQ  801 (833)
Q Consensus       727 ~~~~~~~~~~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~~~~~~l~~~~----~~~~~pd~~~~~f~l~~~~~~~-~p~  801 (833)
                      .|+.+++++||++++++|++||++  +.+.+.+++.+++++++++|++..    ..++.+|+.++||.|+..++++ .+.
T Consensus       750 ~~~~~e~~~fL~l~~qli~~f~~~--~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~  827 (980)
T 3ibv_A          750 SIDMNELVDVLSFISQLIHIYKDN--MMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGS  827 (980)
T ss_dssp             HCCTTTHHHHHHHHHHHHHHTTTT--SHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTG
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence            999999999999999999999998  999999999999999999998621    1245677999999999999985 467


Q ss_pred             ccCCc---CCcHHHHHHHHH-cccccCchhhhhh
Q 003289          802 LFIPS---SVFPSLVDCSMI-GITVQHRRRILIC  831 (833)
Q Consensus       802 ~~~~~---~~l~~~~~~~~~-~l~~~~~~~~~~~  831 (833)
                      .+++.   +.++.++...+. |...++-.+.++|
T Consensus       828 v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a  861 (980)
T 3ibv_A          828 ILFTEENQVYFDPLINSILHFANLVGEPATQKSS  861 (980)
T ss_dssp             GGGSHHHHTTHHHHHHHHHHHC-----CHHHHHH
T ss_pred             hhcCCcchHHHHHHHHHHHHHhccCCChHHHHHH
Confidence            77763   457766666653 3445566655554

PyMOL of 3ibv

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		833
d1wa5c_		959	a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc	3e-17
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	5e-15
d2bpta1		861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	3e-11
d1w9ca_		321	a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Ho	2e-08
d1qgra_		876	a.118.1.1 (A:) Importin beta {Human (Homo sapiens)	1e-04
d1ibrb_		458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	0.002

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.2 bits (207), Expect = 3e-17
 Identities = 94/837 (11%), Positives = 236/837 (28%), Gaps = 124/837 (14%)

Query: 11  LNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQR 70
              L      +    ++R L+  +          +++      L T +  +   ++ ++R
Sbjct: 8   AKFLAESVIASTAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKR 67

Query: 71  DVEE------LPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGG 124
              +      LP+  V  ++     ++      P  ++ QI  A++++A     + W   
Sbjct: 68  KWVDENGNHLLPANNVELIK---KEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW--P 122

Query: 125 GIVNWLRDEMNSH-PEFVPGFLELLTVLPEEV-FNYKIAARPERRRQFEKELTSQMEVAL 182
            +++ L   +++       G L +   + +     ++        +      T+     L
Sbjct: 123 TLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLL 182

Query: 183 STLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNV 242
            T+   +  NE  +  L      L +  ++               +        E ++ V
Sbjct: 183 KTVDEQITANENNKASLNILFDVLLVLIKL-----------YYDFNCQDIPEFFEDNIQV 231

Query: 243 ISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDS 302
              + H                +    P ++        +S   +   +I  L       
Sbjct: 232 GMGIFHK--------------YLSYSNP-LLEDPDETEHASVLIKVKSSIQELVQLYTTR 276

Query: 303 YVELIATGSDESM-LIVHALLEVASHPEYD-IASMTFNFWHSLQVILTKRDSYISFGNEA 360
           Y ++     +E + +  + L  +++ P+YD + S + +F  ++                 
Sbjct: 277 YEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAV----------------- 319

Query: 361 SAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTL 420
                +   +    SA  ++   +       ++      ED       R      + +  
Sbjct: 320 -TRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRR 378

Query: 421 TESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAI 480
                  A  D L +         T   L            +    W+  +  ++   A+
Sbjct: 379 R------ACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTAL 432

Query: 481 -----STYVSVVEAEVMPQVMALLPKL---------PQQPQLLQTVCLTIGAYSKWFDAA 526
                 T   V     +  V+    K               L       I  +       
Sbjct: 433 AINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--- 489

Query: 527 SSDPSILASVLSILTSGMSTSEDT-AAAAALAFRHICDDC-----------RKKLCGYLD 574
               + L  ++ IL + + T E      AA+    I               ++ +    +
Sbjct: 490 --TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE 547

Query: 575 GLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEI 634
            L       +   GS      ++  L+ ++  V+          +++ L   ++    EI
Sbjct: 548 ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSED-----SIQPLFPQLLAQFIEI 602

Query: 635 INQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRT 694
           +    +      PR      +    I  Y    + +   +  + P F  +F     +   
Sbjct: 603 VTIMAKNPSN--PRFTHYTFESIGAILNYTQ-RQNLPLLVDSMMPTFLTVFSEDIQEF-- 657

Query: 695 MESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCA 754
                    Y  +         I  ++E+   + +  +      L+  V ++ G+ P+  
Sbjct: 658 -------IPYVFQ--------IIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVT 702

Query: 755 SYLHNLI---EALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSV 808
             L + I    ++F     +L   +   +        F L    +       +   +
Sbjct: 703 RLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRLRPYI 759

PyMOL of d1wa5c_

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861	Back information, alignment and structure

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Length = 321	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		833
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.98
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.97
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.97
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.4
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.24
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.91
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.91
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.9
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.68
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.59
d1w9ca_		321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	98.41
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.09
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	97.91
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	97.09
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	96.65
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	95.63
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	93.47
d1w9ca_		321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	92.16
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	91.66
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	90.43
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	89.52
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	88.65
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	88.34
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	88.18

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=8.8e-36  Score=362.28  Aligned_cols=687  Identities=13%  Similarity=0.191  Sum_probs=420.3

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhcc-CCCchHHHHHHHHHHHHHhhcCCCCCChhhHHHH
Q 003289            5 NTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL   83 (833)
Q Consensus         5 ~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~-~~~~~~vrffaa~~L~~ki~~~w~~l~~~~~~~l   83 (833)
                      +++.+.++.. .++|++.|++|+++|+++++.|+.|.++..|+.. .+.+.++|++|+.+||++|+++|..++++.+..|
T Consensus        11 ~ql~~~L~~~-~s~d~~~r~~A~~~L~~~~~~p~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~~~~~~~~~I   89 (888)
T d1qbkb_          11 QQILQLLKES-QSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFI   89 (888)
T ss_dssp             HHHHHHHTTC-CHHHHHHHHHHTTSTTTSTTSTTTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTCSTTTCCHHH
T ss_pred             HHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCHHHHHHH
Confidence            4444444433 2467889999999999999999999988888874 2346679999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC-CCCcHHHHHHHHhhchhhcccccccC
Q 003289           84 QDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS-HPEFVPGFLELLTVLPEEVFNYKIAA  162 (833)
Q Consensus        84 r~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~~~~-~~~~~~~~L~iL~~l~Ee~~~~~~~~  162 (833)
                      |+.++..+..   .++.||++++.+++.++.+.+++.||+  +++.+.+.+.+ ++......+..|..|+|+....... 
T Consensus        90 k~~ll~~l~~---~~~~vr~~~~~~i~~i~~~~~~~~Wpe--ll~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~-  163 (888)
T d1qbkb_          90 KSECLNNIGD---SSPLIRATVGILITTIASKGELQNWPD--LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDS-  163 (888)
T ss_dssp             HHHHTTGGGC---CCSSTTTTTTTTTHHHHTTTSSCSSTT--TSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHHT-
T ss_pred             HHHHHHHHcC---CCHHHHHHHHHHHHHHHHHhCccchHH--HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhhH-
Confidence            9999988754   567789999999999999888889999  99999887754 3344556677777777764321000 


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhccCCCCccccccchhHHHHHhccCCcchHHHHHHH
Q 003289          163 RPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNV  242 (833)
Q Consensus       163 ~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~~~~Wi~~~~~i~~~~~~~~~ll~~~~~~L~~~~~~~~a~~~  242 (833)
                               +......+.++..+.+.++++                                       +++.+..|+.+
T Consensus       164 ---------~~~~~~~~~ll~~ll~~~~~~---------------------------------------~~~vr~~al~~  195 (888)
T d1qbkb_         164 ---------DVLDRPLNIMIPKFLQFFKHS---------------------------------------SPKIRSHAVAC  195 (888)
T ss_dssp             ---------C---CCSTTTTHHHHTGGGSS---------------------------------------SSCSSSTTTHH
T ss_pred             ---------HHHHHHHHHHHHHHHHHhhCC---------------------------------------CHHHHHHHHHH
Confidence                     000011111222222222211                                       12233344444


Q ss_pred             HHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhccCCHHHHHHHHHHHHHHhhHHHHHHHcCCchhHHHHHHHH
Q 003289          243 ISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALL  322 (833)
Q Consensus       243 l~~ii~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~d~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~l~~ll  322 (833)
                      +..++.....       .....+..+++.+..+     ..+.+.+..+..++.++.+.+.+...+.   ++...++++++
T Consensus       196 l~~~~~~~~~-------~~~~~~~~~l~~l~~~-----~~~~~~~vr~~~~~~l~~l~~~~~~~l~---~~l~~i~~~~l  260 (888)
T d1qbkb_         196 VNQFIISRTQ-------ALMLHIDSFTENLFAL-----AGDEEPEVRKNVCRALVMLLEVRMDRLL---PHMHNIVEYML  260 (888)
T ss_dssp             HHGGGGCCCS-------TTCSHHHHCSHHHHTT-----SSCCCSSSTTHHHHTTTTTSCSCTTTTT---TTTTTTTTTTT
T ss_pred             HHHHHHhhhH-------HHHHHHHHHHHHHHHh-----cCCcchHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHH
Confidence            4433321110       0011111111111110     1112222233445555444433332221   23345667777


Q ss_pred             hhhcCCCcchhhhhHHHHHHHHHHHhhcccccccCcccchHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCC--------
Q 003289          323 EVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDY--------  394 (833)
Q Consensus       323 ~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~--------  394 (833)
                      ..+.+++++++..+++||..+.+.-..                    .....+++.+++..++..|.|++..        
T Consensus       261 ~~~~~~~e~v~~~a~ef~~~~~e~~~~--------------------~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~  320 (888)
T d1qbkb_         261 QRTQDQDENVALEACEFWLTLAEQPIC--------------------KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDV  320 (888)
T ss_dssp             TTTTSSCHHHHHHHHHHHCCCCSGGGG--------------------TTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTS
T ss_pred             HhcCCCcHHHHHHHHHHHHHHHHhhhh--------------------HHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhh
Confidence            778888899999999999877643111                    0112233344444444555443210        


Q ss_pred             CCCC----------------------------hhhhHHhHhhhhcccccCCccchhhhhhhchhHHHHHHHhhcChhHHH
Q 003289          395 QDLS----------------------------LEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATL  446 (833)
Q Consensus       395 ~~~~----------------------------~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l  446 (833)
                      +.+.                            .++.++..+...   .+....++.   +++.+.++..+....| +.++
T Consensus       321 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---r~~a~~~L~~l~~~~~-~~il  393 (888)
T d1qbkb_         321 EEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDD---DDTISDWNL---RKCSAAALDVLANVYR-DELL  393 (888)
T ss_dssp             SCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCC---CSTTSCCSS---HHHHHHHSTTTTTTCC-SSSH
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhh---hhhhhhhhH---HHHHHHHHhhHhhhhH-HHHH
Confidence            0000                            000000011100   011122221   2224455555556666 5577


Q ss_pred             HHHHHHHHHhHhhcCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcc-CCC-ChHHHHHHHHHHHHhchHHHh
Q 003289          447 KILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFD  524 (833)
Q Consensus       447 ~~l~~~l~~~~~~~~~~~~~w~~~Eaal~~l~~i~e~~~~~~~~~l~~l~~~l~-~l~-~~~~v~~t~~~~ig~y~~~l~  524 (833)
                      +.+.+.+.+.+.     +.+|+.+|+++++++++++++...-.++++++++.+. .+. .+|.||.++++++|+|++|+.
T Consensus       394 ~~~l~~l~~~l~-----s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~  468 (888)
T d1qbkb_         394 PHILPLLKELLF-----HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV  468 (888)
T ss_dssp             HHHHHHHHHTTT-----SSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHhhc-----cchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Confidence            777777776542     5789999999999999999887655677888887764 343 489999999999999999998


Q ss_pred             hCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHHHHhcCcCCCCCCHhhHHHHHHH
Q 003289          525 AASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEA  603 (833)
Q Consensus       525 ~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l~~~~~~~l~~~l~~ll~~l~~~l~~~~~~~l~~~~~~~l~ea  603 (833)
                      .+.. ..++..+++.++..+.++. .|+.+|+.||..+++.+...+.||++.+++.+...+..     ...+++..++++
T Consensus       469 ~~~~-~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~-----~~~~~~~~~~~a  542 (888)
T d1qbkb_         469 SQPP-DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSK-----YQHKNLLILYDA  542 (888)
T ss_dssp             SSCH-HHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTT-----CCHHHHHHHHHH
T ss_pred             hhhh-hhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhh-----hhHHHHHHHHHH
Confidence            6542 1367778887777776543 59999999999999999999999999999999888763     457788899999


Q ss_pred             HHHHHhcCChH-HHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHhhhccCC----------------
Q 003289          604 LSMVITELPQV-DAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH----------------  666 (833)
Q Consensus       604 i~~vi~~~~~~-~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~----------------  666 (833)
                      ++.++..+... ...++++.++.++.+.+.......         ......+++++.+....+.                
T Consensus       543 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---------~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~  613 (888)
T d1qbkb_         543 IGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDED---------KDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNL  613 (888)
T ss_dssp             HHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTC---------TTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccccchHHHHHHHHHHHHHHHhcccch---------HHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHH
Confidence            99998876543 223566666655554432211110         0111223333333222210                


Q ss_pred             --------------------cc--------------------cHHHHHH--HHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 003289          667 --------------------PE--------------------AVADAIQ--RLWPIFKAIFDIRAWDMRTMESLCRACKY  704 (833)
Q Consensus       667 --------------------~~--------------------~~~~~~~--~~~~~l~~il~~~~~~~~v~e~~~~~~~~  704 (833)
                                          +.                    ...+++.  .+++++...++  ..+++|++.+..+++.
T Consensus       614 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~--~~~~~vr~~a~~llgd  691 (888)
T d1qbkb_         614 VQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQ--DKMPEVRQSSFALLGD  691 (888)
T ss_dssp             HHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHT--CSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhC--CCChHHHHHHHHHHHH
Confidence                                00                    0000000  11222222221  2456788888888888


Q ss_pred             HHHHhhhhhhhhHHHHHHHHHHHHhhcCC---ccHhhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhhcccccCCcC
Q 003289          705 AVRTSKRFMGITIGAILEEIQGLYQQHQQ---PCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSR  781 (833)
Q Consensus       705 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~---~~~L~~~~~li~~fg~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~  781 (833)
                      +.+.+++.+.|+++.++..+...+.....   ...++.++.++...|.+  +.+++..++..++.    .++.   .+.+
T Consensus       692 l~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~--~~py~~~il~~L~~----il~~---~~~~  762 (888)
T d1qbkb_         692 LTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIE--MQPYIPMVLHQLVE----IINR---PNTP  762 (888)
T ss_dssp             HHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGG--GGGGSHHHHHHHHH----HHTC---TTCC
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHH----HHcC---CCcc
Confidence            88888888899999888887776544322   23456777777777754  77777776665553    4442   2334


Q ss_pred             CchHHHHHHHHHHHHhhCCCccCCcCCcHHHHHHHHHccc
Q 003289          782 PDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGIT  821 (833)
Q Consensus       782 pd~~~~~f~l~~~~~~~~p~~~~~~~~l~~~~~~~~~~l~  821 (833)
                      ..+.++....++++...+|..+.  +.++.++.-.+.++.
T Consensus       763 ~~v~~n~~~~lgrl~~~~p~~~~--~~l~~~~~~~~~~l~  800 (888)
T d1qbkb_         763 KTLLENTAITIGRLGYVCPQEVA--PMLQQFIRPWCTSLR  800 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHG--GGGGGTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHCHHHHH--hhHHHHHHHHHHHhc
Confidence            45788899999999999998873  355555555555554

PyMOL of d1qbkb_

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure