Citrus Sinensis ID: 003307
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 832 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WR59 | 1048 | Probable inactive recepto | no | no | 0.960 | 0.762 | 0.410 | 1e-158 | |
| C0LGQ9 | 1037 | Probable LRR receptor-lik | no | no | 0.921 | 0.739 | 0.366 | 1e-130 | |
| Q9LVP0 | 1102 | Probable leucine-rich rep | no | no | 0.587 | 0.443 | 0.319 | 4e-47 | |
| Q8VZG8 | 1045 | Probable LRR receptor-lik | no | no | 0.593 | 0.472 | 0.317 | 4e-46 | |
| Q9FZ59 | 1088 | Leucine-rich repeat recep | no | no | 0.596 | 0.455 | 0.308 | 7e-44 | |
| Q9FL51 | 872 | Probably inactive leucine | no | no | 0.612 | 0.584 | 0.302 | 2e-43 | |
| Q9SHI2 | 1101 | Leucine-rich repeat recep | no | no | 0.578 | 0.436 | 0.333 | 3e-43 | |
| Q42371 | 976 | LRR receptor-like serine/ | no | no | 0.537 | 0.457 | 0.316 | 4e-43 | |
| C0LGW6 | 966 | LRR receptor-like serine/ | no | no | 0.658 | 0.567 | 0.319 | 4e-43 | |
| P93194 | 1109 | Receptor-like protein kin | N/A | no | 0.592 | 0.444 | 0.308 | 1e-42 |
| >sp|Q0WR59|Y5020_ARATH Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana GN=At5g10020 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 558 bits (1437), Expect = e-158, Method: Compositional matrix adjust.
Identities = 348/847 (41%), Positives = 493/847 (58%), Gaps = 48/847 (5%)
Query: 13 VNALGQSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSS-DGCPRNWFGITC--TNGYVTS 69
NA+ +++ +LL+ +KGI + S Q I DT SL+ CP +W GI+C G + +
Sbjct: 19 ANAVTETELRSLLEFRKGIRDETSHQRISWSDTSSLTDPSTCPNDWPGISCDPETGSIIA 78
Query: 70 IMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGL 128
I L+ GL G F T+ GL L N+S+S N G + +G I SL+ LDLS N F+G
Sbjct: 79 INLDRRGLSGELKFSTLSGLTRLRNLSLSGNSFSGRVVPSLGGISSLQHLDLSDNGFYGP 138
Query: 129 IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVV 188
IP I L +L LN+SSN FEG FPSGF L +L+ LDL N GD+ + ++L +V
Sbjct: 139 IPGRISELWSLNHLNLSSNKFEGGFPSGFRNLQQLRSLDLHKNEIWGDVGEIFTELKNVE 198
Query: 189 HVDLSNNQFSGSLDLGLGDSSFIS-SIQYLNISENSLVGELFPHDGMPYFDNLEVFDASN 247
VDLS N+F+G L L + + S IS ++++LN+S N+L G+ F + + F NLE+ D N
Sbjct: 199 FVDLSCNRFNGGLSLPMENISSISNTLRHLNLSHNALNGKFFSEESIGSFKNLEIVDLEN 258
Query: 248 NHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSIT 307
N + G +P F SLRIL+L N+L G +P LLQ SS+ L ELDLS N G + I
Sbjct: 259 NQINGELPHFGSQPSLRILKLARNELFGLVPQELLQ-SSIPLLELDLSRNGFTGSISEIN 317
Query: 308 SATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLT 367
S+TL +NLSSN LSG LP+ C+++DLS N SGD+S +Q W + + LSSN L+
Sbjct: 318 SSTLTMLNLSSNGLSGDLPSSFKSCSVIDLSGNTFSGDVSVVQKWEATPDVLDLSSNNLS 377
Query: 368 GMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTK 427
G +PN TS F RL+ + NNS+ G LP++ G + VIDLS N +GF+ SFFT
Sbjct: 378 GSLPNFTSAFSRLSVLSIRNNSVSGSLPSLWGD-SQFSVIDLSSNKFSGFIPVSFFTFAS 436
Query: 428 LTDLNLSGNNFSGPLPLQ-------------------EIQNNPSTGSTQN-----LSLTS 463
L LNLS NN GP+P + ++ N TG +
Sbjct: 437 LRSLNLSRNNLEGPIPFRGSRASELLVLNSYPQMELLDLSTNSLTGMLPGDIGTMEKIKV 496
Query: 464 LDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPE 523
L+LA N LSG L ++K L++L+LSNN F+G IP+ LP+ + FNVS+N+LSG++PE
Sbjct: 497 LNLANNKLSGELPSDLNKLSGLLFLDLSNNTFKGQIPNKLPSQMVGFNVSYNDLSGIIPE 556
Query: 524 NLRNFPDSAFHPGNSLLTFPNSPSQQDVPDLTLRGHGNHMKPATKIALIVGLVCGVTMVA 583
+LR++P S+F+PGNS L+ P DL+L G +H K + +IA+IV V G ++
Sbjct: 557 DLRSYPPSSFYPGNSKLSLPGRIPADSSGDLSLPGKKHHSKLSIRIAIIVASV-GAAIMI 615
Query: 584 LLCMLIYFRA-LWQRHGRDSFKRDGEQKAFSEGSSSLSQRSGVNKKGDPSLSSFTFHQDP 642
L + Y R L HGR+ F + G SS + + SS +F D
Sbjct: 616 LFVLFAYHRTQLKDFHGRNRFTDQATTRDTKFGRSSRPSLFNFSSNVEQQSSSLSFSNDH 675
Query: 643 LPSS--------PMESAYDAGETSSVVTKPKELYHPDSVRKDEGLSSPVSLLSSSNPSQS 694
L ++ P A + + + + P L D+ ++ SS S
Sbjct: 676 LLTANSRSLSGIPGCEAEISEQGAPATSAPTNLL-------DDYPAASGRKSSSGGSPLS 728
Query: 695 KNSRFTKNSDVLNACSPEKLAGDLHLFDVSLMFTAEELSHAPAEVIGRSCHGTLYKATLD 754
+ RF+ +L+ SP++LAG+L DVSL TAEELS APAEV+GRS HGTLYKATLD
Sbjct: 729 SSPRFSDQPVMLDVYSPDRLAGELFFLDVSLKLTAEELSRAPAEVLGRSSHGTLYKATLD 788
Query: 755 SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814
+G +L VK LR G+ + KK+FARE KK+G++KHPN+V L+ YYWGP+E E+L++S+Y+
Sbjct: 789 NGHMLTVKWLRVGLVRHKKDFAREAKKIGSLKHPNIVPLRAYYWGPREQERLLLSDYLRG 848
Query: 815 QSLAVYL 821
+SLA++L
Sbjct: 849 ESLAMHL 855
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|C0LGQ9|Y4294_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 466 bits (1198), Expect = e-130, Method: Compositional matrix adjust.
Identities = 324/883 (36%), Positives = 476/883 (53%), Gaps = 116/883 (13%)
Query: 16 LGQSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITCTNGYVTSIMLNDM 75
L D ALL+ KKGI DP+G +++SW+ +S+ +GCP +W GI C G V ++L+++
Sbjct: 4 LPSQDIMALLEFKKGIKHDPTGFVLNSWNDESIDFNGCPSSWNGIVCNGGNVAGVVLDNL 63
Query: 76 GLVGNFSFPTIIGLKMLCNVSVSNNQLMGNI-TDIGSIQSLEFLDLSHNLFHGLIPSGI- 133
GL + F L L +S+SNN L G + D+GS +SL+FLDLS NLF +P I
Sbjct: 64 GLTADADFSLFSNLTKLVKLSMSNNSLSGVLPNDLGSFKSLQFLDLSDNLFSSSLPKEIG 123
Query: 134 --VSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVD 191
VSL+NL L S N+F G P GGL L+ LD+ +N G + L++L +++++
Sbjct: 124 RSVSLRNLSL---SGNNFSGEIPESMGGLISLQSLDMSSNSLSGPLPKSLTRLNDLLYLN 180
Query: 192 LSNNQFSGSLDLG---------------------------LGDSSFI------------- 211
LS+N F+G + G L ++S++
Sbjct: 181 LSSNGFTGKMPRGFELISSLEVLDLHGNSIDGNLDGEFFLLTNASYVDISGNRLVTTSGK 240
Query: 212 ------SSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRI 265
SI++LN+S N L G L G F NL+V D S N L G +P FN+V+ L +
Sbjct: 241 LLPGVSESIKHLNLSHNQLEGSL--TSGFQLFQNLKVLDLSYNMLSGELPGFNYVYDLEV 298
Query: 266 LRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSL 325
L+L +N+ SGSLP LL+ S++L+ LDLS N L GPV SI S TL ++LSSN L+G L
Sbjct: 299 LKLSNNRFSGSLPNNLLKGDSLLLTTLDLSGNNLSGPVSSIMSTTLHTLDLSSNSLTGEL 358
Query: 326 PARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKV 385
P G C ++DLSNN+ G+L+R W N +E + LS N TG P+ T Q LR +
Sbjct: 359 PLLTGGCVLLDLSNNQFEGNLTRWSKWEN-IEYLDLSQNHFTGSFPDATPQLLRANHLNL 417
Query: 386 SNNSLEGDLPAVLGT-YPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFS---GP 441
S N L G LP + T YP+L+V+D+S N L G + + + L +++L N + GP
Sbjct: 418 SYNKLTGSLPERIPTHYPKLRVLDISSNSLEGPIPGALLSMPTLEEIHLQNNGMTGNIGP 477
Query: 442 LP-------LQEIQNN------PST-GSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVY 487
LP L ++ +N P GS NL + L+LA N+LSG L ++ +L
Sbjct: 478 LPSSGSRIRLLDLSHNRFDGDLPGVFGSLTNLQV--LNLAANNLSGSLPSSMNDIVSLSS 535
Query: 488 LNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFPDSAFHPGNSLLTFPNSPS 547
L++S N F G +P L + + FNVS+N+LSG VPENL+NFP +F+PGNS L P
Sbjct: 536 LDVSQNHFTGPLPSNLSSNIMAFNVSYNDLSGTVPENLKNFPPPSFYPGNSKLVLPAGSP 595
Query: 548 QQDVPDLTLRGHGNHMKPATKIALIVGLVCGVTMVALLCMLIYFRALWQRH------GRD 601
+ + N + K+ +IV + ++ L+ +L++ +R G++
Sbjct: 596 GSSASEASKNKSTNKL---VKVVIIVSCAVALIILILVAILLFCICKSRRREERSITGKE 652
Query: 602 SFKRDGEQKAFSEGSSSLSQRSGVNKKGDPSLSSFTFHQDPLPSSPMESAYDAGETSSVV 661
+ +R + S G +S V + S + P + + + +TS++
Sbjct: 653 TNRRAQTIPSGSGGGMVVSAEDLVASRKGSSSEILS----PDEKLAVATGFSPSKTSNLS 708
Query: 662 TKPKELYHPDSVRKDEGLSSPVSLLSSSNPSQSKNSRFTKNSDVLNACSPEKLAGDLHLF 721
P DS D+ L+ L+ SP++L G+LH
Sbjct: 709 WSPGS---GDSFPADQQLAR------------------------LDVRSPDRLVGELHFL 741
Query: 722 DVSLMFTAEELSHAPAEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKK 781
D S+ T EELS APAEV+GRS HGT Y+ATLD+G L VK LREG+AK +KEFA+EVKK
Sbjct: 742 DDSIKLTPEELSRAPAEVLGRSSHGTSYRATLDNGVFLTVKWLREGVAKQRKEFAKEVKK 801
Query: 782 LGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQSLAVYLQGK 824
NI+HPN+V+L+GYYWGP +HEKL++S+YI+ SLA +L +
Sbjct: 802 FSNIRHPNVVTLRGYYWGPTQHEKLILSDYISPGSLASFLYDR 844
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 190 bits (483), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 173/542 (31%), Positives = 286/542 (52%), Gaps = 53/542 (9%)
Query: 95 VSVSNNQLMGNI-TDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTF 153
+++ NQL+G I ++G +QSLEFL L N +G IP I +L + ++ S N+ G
Sbjct: 270 LALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEI 329
Query: 154 PSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISS 213
P G + L+ L L N+ G I LS L ++ +DLS N +G + LG ++
Sbjct: 330 PLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGF---QYLRG 386
Query: 214 IQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFS-LRILRLGSNQ 272
+ L + +NSL G + P G ++ +L V D S+NHL G IPS+ + S + IL LG+N
Sbjct: 387 LFMLQLFQNSLSGTIPPKLG--WYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNN 444
Query: 273 LSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSS-----NKLSGSLPA 327
LSG++P + + L +L L+ N L VG S K+VN+++ N+ GS+P
Sbjct: 445 LSGNIPTGI--TTCKTLVQLRLARNNL---VGRFPSNLCKQVNVTAIELGQNRFRGSIPR 499
Query: 328 RVGHCTIVD---LSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFK 384
VG+C+ + L++N +G+L R + + +++SSN LTG VP++ L
Sbjct: 500 EVGNCSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLD 559
Query: 385 VSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPL 444
+ N+ G LP+ +G+ +L+++ LS N+L+G + + ++LT+L + GN F+G +P
Sbjct: 560 MCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPR 619
Query: 445 QEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLP 504
+ GS L + +L+L+YN L+G + P +S L +L L+NN G IP
Sbjct: 620 E-------LGSLTGLQI-ALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFA 671
Query: 505 N--GLKEFNVSFNNLSGVVPENLRNFPDSAF--------HPGNSLL-TFPNSPSQQDVPD 553
N L +N S+N+L+G +P LRN S+F P N + T P +PSQ
Sbjct: 672 NLSSLLGYNFSYNSLTGPIPL-LRNISMSSFIGNEGLCGPPLNQCIQTQPFAPSQST--- 727
Query: 554 LTLRGHGNHMKPATKIALIVGLVCGVTMVALLCMLIYFRALWQRHGRD--SFKRDGEQKA 611
G M+ + IA+ ++ GV+++ L+ +++Y L +R R S +DG+
Sbjct: 728 ----GKPGGMRSSKIIAITAAVIGGVSLM-LIALIVY---LMRRPVRTVASSAQDGQPSE 779
Query: 612 FS 613
S
Sbjct: 780 MS 781
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 187 bits (474), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 175/551 (31%), Positives = 260/551 (47%), Gaps = 57/551 (10%)
Query: 23 ALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITCTNGYVTSIMLNDMGLVGNFS 82
ALL+ K S + SW + SS C +W+G+ C+ G + + L + G+ G F
Sbjct: 53 ALLKWKSTFTNQTSSSKLSSWVNPNTSS-FC-TSWYGVACSLGSIIRLNLTNTGIEGTFE 110
Query: 83 FPTIIGLKMLCNVSVSNNQLMGNITDI-GSIQSLEFLDLSHNLFHGLIPSGIVSLKNLML 141
L L V +S N+ G I+ + G LE+ DLS N G IP + L NL
Sbjct: 111 DFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLVGEIPPELGDLSNLDT 170
Query: 142 LNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSL 201
L++ N G+ PS G L K+ + + N G I L +V++ L N SGS+
Sbjct: 171 LHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFGNLTKLVNLYLFINSLSGSI 230
Query: 202 DLGLGD-------------------SSF--ISSIQYLNISENSLVGELFPHDG-MPYFDN 239
+G+ SSF + ++ LN+ EN L GE+ P G M D
Sbjct: 231 PSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDT 290
Query: 240 LEVFDASNNHLVGAIPS-FNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQ 298
L + N L G IPS + +L +L L NQL+GS+P L + SM+ +L++S N+
Sbjct: 291 LSLH---TNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELGEMESMI--DLEISENK 345
Query: 299 LEGPV----GSITSATLKKVNLSSNKLSGSLPARVGHCT---IVDLSNNRLSGDLSRMQN 351
L GPV G +T+ L+ + L N+LSG +P + + T ++ L N +G L
Sbjct: 346 LTGPVPDSFGKLTA--LEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNNFTGFLPDTIC 403
Query: 352 WGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSL 411
G +E++ L N G VP L + NS GD+ G YP L IDLS
Sbjct: 404 RGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSN 463
Query: 412 NHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQ----------EIQNNPSTG----STQ 457
N+ +G L ++ S KL LS N+ +G +P + ++ +N TG S
Sbjct: 464 NNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESIS 523
Query: 458 NLS-LTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPN--GLKEFNVSF 514
N++ ++ L L N LSG++ GI NL YL+LS+N+F IP L N L N+S
Sbjct: 524 NINRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSR 583
Query: 515 NNLSGVVPENL 525
N+L +PE L
Sbjct: 584 NDLDQTIPEGL 594
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (454), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 174/564 (30%), Positives = 261/564 (46%), Gaps = 68/564 (12%)
Query: 19 SDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITC--TNGYVTSIMLNDMG 76
SD ALL L K K P ++ +W + + C NWFG+ C + V ++ L+ G
Sbjct: 29 SDGLALLSLLKHFDKVPL-EVASTWKENTSETTPCNNNWFGVICDLSGNVVETLNLSASG 87
Query: 77 LVGNFSFPTIIGLKMLCNVSVSNNQLMGNI-TDIGSIQSLEFLDLSHNLFHGLIPSGIVS 135
L G I LK L + +S N G + + +G+ SLE+LDLS+N F G +P S
Sbjct: 88 LSGQLG-SEIGELKSLVTLDLSLNSFSGLLPSTLGNCTSLEYLDLSNNDFSGEVPDIFGS 146
Query: 136 LKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNN 195
L+NL L + N+ G P+ GGL +L L + N G I LL + ++ L+NN
Sbjct: 147 LQNLTFLYLDRNNLSGLIPASVGGLIELVDLRMSYNNLSGTIPELLGNCSKLEYLALNNN 206
Query: 196 QFSGSL--------DLG--------LG-----DSSFISSIQYLNISENSLVGELFPHDG- 233
+ +GSL +LG LG SS + L++S N G + P G
Sbjct: 207 KLNGSLPASLYLLENLGELFVSNNSLGGRLHFGSSNCKKLVSLDLSFNDFQGGVPPEIGN 266
Query: 234 ---------------------MPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSN 271
M + V D S+N L G IP SL L+L N
Sbjct: 267 CSSLHSLVMVKCNLTGTIPSSMGMLRKVSVIDLSDNRLSGNIPQELGNCSSLETLKLNDN 326
Query: 272 QLSGSLPVALLQESSMMLSELDLSLNQLEG--PVGSITSATLKKVNLSSNKLSGSLPARV 329
QL G +P AL + L L+L N+L G P+G +L ++ + +N L+G LP V
Sbjct: 327 QLQGEIPPALSKLKK--LQSLELFFNKLSGEIPIGIWKIQSLTQMLVYNNTLTGELPVEV 384
Query: 330 ---GHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVS 386
H + L NN GD+ +E++ L N TG +P +L F +
Sbjct: 385 TQLKHLKKLTLFNNGFYGDIPMSLGLNRSLEEVDLLGNRFTGEIPPHLCHGQKLRLFILG 444
Query: 387 NNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQE 446
+N L G +PA + L+ + L N L+G +LP F S L+ +NL N+F G +P
Sbjct: 445 SNQLHGKIPASIRQCKTLERVRLEDNKLSG-VLPEFPESLSLSYVNLGSNSFEGSIP--- 500
Query: 447 IQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNG 506
S GS +N L ++DL+ N L+G + P + +L LNLS+N EG +P L
Sbjct: 501 ----RSLGSCKN--LLTIDLSQNKLTGLIPPELGNLQSLGLLNLSHNYLEGPLPSQLSGC 554
Query: 507 LK--EFNVSFNNLSGVVPENLRNF 528
+ F+V N+L+G +P + R++
Sbjct: 555 ARLLYFDVGSNSLNGSIPSSFRSW 578
|
Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL51|Y5694_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana GN=At5g06940 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 187/619 (30%), Positives = 267/619 (43%), Gaps = 109/619 (17%)
Query: 24 LLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITCTNG---YVTSIMLNDMGLVGN 80
LL+ K DP G + ++T S S C NW GITCT YV+SI L + L G
Sbjct: 36 LLRFKASF-DDPKGSLSGWFNTSS--SHHC--NWTGITCTRAPTLYVSSINLQSLNLSGE 90
Query: 81 FSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNL 139
S +I L L ++ +S N I + +LE L+LS NL G IP I +L
Sbjct: 91 IS-DSICDLPYLTHLDLSLNFFNQPIPLQLSRCVTLETLNLSSNLIWGTIPDQISEFSSL 149
Query: 140 MLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNN---- 195
+++ SSN EG P G L L+ L+L +N G + + +L +V +DLS N
Sbjct: 150 KVIDFSSNHVEGMIPEDLGLLFNLQVLNLGSNLLTGIVPPAIGKLSELVVLDLSENSYLV 209
Query: 196 ----QFSGSLD----LGLGDSSF----------ISSIQYLNISENSLVGELFPHDGMPYF 237
F G LD L L S F ++S++ L++S N+L GE+ P P
Sbjct: 210 SEIPSFLGKLDKLEQLLLHRSGFHGEIPTSFVGLTSLRTLDLSLNNLSGEI-PRSLGPSL 268
Query: 238 DNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLN 297
NL D S N L G+ PS
Sbjct: 269 KNLVSLDVSQNKLSGSFPS----------------------------------------- 287
Query: 298 QLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVD---LSNNRLSGDLSRMQNWGN 354
G + L ++L SN GSLP +G C ++ + NN SG+ +
Sbjct: 288 ------GICSGKRLINLSLHSNFFEGSLPNSIGECLSLERLQVQNNGFSGEFPVVLWKLP 341
Query: 355 YVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHL 414
++ I +N TG VP S L ++ NNS G++P LG L S N
Sbjct: 342 RIKIIRADNNRFTGQVPESVSLASALEQVEIVNNSFSGEIPHGLGLVKSLYKFSASQNRF 401
Query: 415 NGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGR 474
+G L P+F S L+ +N+S N G +P E++N L SL LA N+ +G
Sbjct: 402 SGELPPNFCDSPVLSIVNISHNRLLGKIP--ELKNCK--------KLVSLSLAGNAFTGE 451
Query: 475 LLPGISKFHNLVYLNLSNNKFEGSIPDGLPN-GLKEFNVSFNNLSGVVPENLRNFPDSAF 533
+ P ++ H L YL+LS+N G IP GL N L FNVSFN LSG VP +L + ++F
Sbjct: 452 IPPSLADLHVLTYLDLSDNSLTGLIPQGLQNLKLALFNVSFNGLSGEVPHSLVSGLPASF 511
Query: 534 HPGNSLLTFPNSPSQQDVPDLTLRGHGNHMKPATKIALIVGLVCGVTMVALLCMLIY--- 590
GN L P +P+ N K K AL++ L+C +A ++Y
Sbjct: 512 LQGNPELCGPG------LPNSCSSDRSNFHKKGGK-ALVLSLICLALAIATFLAVLYRYS 564
Query: 591 -----FRALWQRHGRDSFK 604
F++ W+ FK
Sbjct: 565 RKKVQFKSTWRSEFYYPFK 583
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 175/525 (33%), Positives = 253/525 (48%), Gaps = 44/525 (8%)
Query: 29 KGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITCTN-GYVTSIMLNDMGLVGNFSFPTII 87
K D +G + SW+ L S+ C NW GI CT+ VTS+ LN M L G S P I
Sbjct: 35 KAFLNDSNGYL-ASWN--QLDSNPC--NWTGIACTHLRTVTSVDLNGMNLSGTLS-PLIC 88
Query: 88 GLKMLCNVSVSNNQLMGNI-TDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISS 146
L L ++VS N + G I D+ +SLE LDL N FHG+IP + + L L +
Sbjct: 89 KLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFHGVIPIQLTMIITLKKLYLCE 148
Query: 147 NSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLG 206
N G+ P G L L+ L + +N G I +++L + + N FSG +
Sbjct: 149 NYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFSGVIP---S 205
Query: 207 DSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAI-PSFNFVFSLRI 265
+ S S++ L ++EN L G L P + NL N L G I PS + L +
Sbjct: 206 EISGCESLKVLGLAENLLEGSL-PKQ-LEKLQNLTDLILWQNRLSGEIPPSVGNISRLEV 263
Query: 266 LRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG----PVGSITSATLKKVNLSSNKL 321
L L N +GS+P + + + M L L NQL G +G++ A +++ S N+L
Sbjct: 264 LALHENYFTGSIPREIGKLTKM--KRLYLYTNQLTGEIPREIGNLIDAA--EIDFSENQL 319
Query: 322 SGSLPARVGHC---TIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFL 378
+G +P GH ++ L N L G + R +E + LS N L G +P Q QFL
Sbjct: 320 TGFIPKEFGHILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIP-QELQFL 378
Query: 379 -RLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNN 437
L ++ +N LEG +P ++G Y V+D+S N L+G + F L L+L N
Sbjct: 379 PYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNK 438
Query: 438 FSGPLPLQ----------EIQNNPSTGSTQ----NL-SLTSLDLAYNSLSGRLLPGISKF 482
SG +P + +N TGS NL +LT+L+L N LSG + + K
Sbjct: 439 LSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKL 498
Query: 483 HNLVYLNLSNNKFEGSIPDGLPNGLK--EFNVSFNNLSGVVPENL 525
NL L L+NN F G IP + N K FN+S N L+G +P+ L
Sbjct: 499 KNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKEL 543
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (448), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 168/531 (31%), Positives = 254/531 (47%), Gaps = 84/531 (15%)
Query: 10 LLVVNALGQSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITCTNGY--V 67
L +V + + LL++KK KD + + D W T S SSD C W G++C N V
Sbjct: 16 LSLVATVTSEEGATLLEIKKSF-KDVNNVLYD-W-TTSPSSDYCV--WRGVSCENVTFNV 70
Query: 68 TSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITD-IGSIQSLEFLDLSHNLFH 126
++ L+D+ L G S P I LK L ++ + N+L G I D IG SL+ LDLS N
Sbjct: 71 VALNLSDLNLDGEIS-PAIGDLKSLLSIDLRGNRLSGQIPDEIGDCSSLQNLDLSFNELS 129
Query: 127 GLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGS 186
G IP I LK L L + +N G PS + LK LDL N+ G+I L+
Sbjct: 130 GDIPFSISKLKQLEQLILKNNQLIGPIPSTLSQIPNLKILDLAQNKLSGEIPRLIY---- 185
Query: 187 VVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDAS 246
+ +QYL + N+LVG + P + L FD
Sbjct: 186 -----------------------WNEVLQYLGLRGNNLVGNISP--DLCQLTGLWYFDVR 220
Query: 247 NNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLP--VALLQESSMMLSELDLSLNQLEGPV 303
NN L G+IP + + ++L L NQL+G +P + LQ ++ L L NQL G +
Sbjct: 221 NNSLTGSIPETIGNCTAFQVLDLSYNQLTGEIPFDIGFLQ-----VATLSLQGNQLSGKI 275
Query: 304 GSITS--ATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHL 361
S+ L ++LS N LSGS+P +G+ T + E ++L
Sbjct: 276 PSVIGLMQALAVLDLSGNLLSGSIPPILGNLT---------------------FTEKLYL 314
Query: 362 SSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPS 421
SN LTG +P + +L ++++N L G +P LG +L ++++ N L G +
Sbjct: 315 HSNKLTGSIPPELGNMSKLHYLELNDNHLTGHIPPELGKLTDLFDLNVANNDLEGPIPDH 374
Query: 422 FFTSTKLTDLNLSGNNFSGPLP--LQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGI 479
+ T L LN+ GN FSG +P Q+++ S+T L+L+ N++ G + +
Sbjct: 375 LSSCTNLNSLNVHGNKFSGTIPRAFQKLE-----------SMTYLNLSSNNIKGPIPVEL 423
Query: 480 SKFHNLVYLNLSNNKFEGSIPDGLPN--GLKEFNVSFNNLSGVVPENLRNF 528
S+ NL L+LSNNK G IP L + L + N+S N+++GVVP + N
Sbjct: 424 SRIGNLDTLDLSNNKINGIIPSSLGDLEHLLKMNLSRNHITGVVPGDFGNL 474
|
Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (448), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 196/613 (31%), Positives = 300/613 (48%), Gaps = 65/613 (10%)
Query: 43 WDTKSLSSDGCPRNWFGITCTN-GY-VTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNN 100
WD +SD C +W G+ C N Y V S+ L+ + L G S P I L+ L ++ + N
Sbjct: 50 WDDVH-NSDLC--SWRGVFCDNVSYSVVSLNLSSLNLGGEIS-PAIGDLRNLQSIDLQGN 105
Query: 101 QLMGNITD-IGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGG 159
+L G I D IG+ SL +LDLS NL +G IP I LK L LN+ +N G P+
Sbjct: 106 KLAGQIPDEIGNCASLVYLDLSENLLYGDIPFSISKLKQLETLNLKNNQLTGPVPATLTQ 165
Query: 160 LGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNI 219
+ LK LDL N G+I LL + ++ L N +G+L D ++ + Y ++
Sbjct: 166 IPNLKRLDLAGNHLTGEISRLLYWNEVLQYLGLRGNMLTGTLS---SDMCQLTGLWYFDV 222
Query: 220 SENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVF-SLRILRLGSNQLSGSLP 278
N+L G + + + + ++ D S N + G IP +N F + L L N+L+G +P
Sbjct: 223 RGNNLTGTI--PESIGNCTSFQILDISYNQITGEIP-YNIGFLQVATLSLQGNRLTGRIP 279
Query: 279 --VALLQESSMMLSELDLSLNQLEGPVGSITS--ATLKKVNLSSNKLSGSLPARVG---H 331
+ L+Q L+ LDLS N+L GP+ I + K+ L N L+G +P+ +G
Sbjct: 280 EVIGLMQA----LAVLDLSDNELVGPIPPILGNLSFTGKLYLHGNMLTGPIPSELGNMSR 335
Query: 332 CTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLE 391
+ + L++N+L G + + +++L++N L G +P+ S L F V N L
Sbjct: 336 LSYLQLNDNKLVGTIPPELGKLEQLFELNLANNRLVGPIPSNISSCAALNQFNVHGNLLS 395
Query: 392 GDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQ------ 445
G +P L ++LS N+ G + L L+LSGNNFSG +PL
Sbjct: 396 GSIPLAFRNLGSLTYLNLSSNNFKGKIPVELGHIINLDKLDLSGNNFSGSIPLTLGDLEH 455
Query: 446 ----EIQNNPSTGSTQ----NL-SLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFE 496
+ N +G NL S+ +D+++N LSG + + + NL L L+NNK
Sbjct: 456 LLILNLSRNHLSGQLPAEFGNLRSIQMIDVSFNLLSGVIPTELGQLQNLNSLILNNNKLH 515
Query: 497 GSIPDGLPN--GLKEFNVSFNNLSGVVPENLRNFPDSAFHPGNSLLTFPNSPSQQDVPDL 554
G IPD L N L NVSFNNLSG+VP ++NF S F P +F +P
Sbjct: 516 GKIPDQLTNCFTLVNLNVSFNNLSGIVPP-MKNF--SRFAPA----SFVGNPYLCGNWVG 568
Query: 555 TLRGHGNHMKPATKIALIVGLVCGVTMVALLCMLIYFRALWQRHGRDSFKRDGEQKAFSE 614
++ G + ++ ALI +V GV + LLCM+ F A++ + +QK +
Sbjct: 569 SICGPLPKSRVFSRGALIC-IVLGV--ITLLCMI--FLAVY---------KSMQQKKILQ 614
Query: 615 GSSSLSQRSGVNK 627
GSS Q G+ K
Sbjct: 615 GSS--KQAEGLTK 625
|
Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 173/560 (30%), Positives = 267/560 (47%), Gaps = 67/560 (11%)
Query: 19 SDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITC-TNGYVTSIMLNDMGL 77
SD ALL L + PS I SW+ +SD P +W G+ C +V ++ L+ G+
Sbjct: 26 SDGAALLSLTRHWTSIPS-DITQSWN----ASDSTPCSWLGVECDRRQFVDTLNLSSYGI 80
Query: 78 VGNFSFPTIIGLKMLCNVSVSNNQLMGNI-TDIGSIQSLEFLDLSHNLFHGLIPSGIVSL 136
G F P I LK L V +S N G+I + +G+ LE +DLS N F G IP + +L
Sbjct: 81 SGEFG-PEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNIPDTLGAL 139
Query: 137 KNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQ 196
+NL L++ NS G FP + L+ + N G I + + + + L +NQ
Sbjct: 140 QNLRNLSLFFNSLIGPFPESLLSIPHLETVYFTGNGLNGSIPSNIGNMSELTTLWLDDNQ 199
Query: 197 FSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPS 256
FSG + LG+ I+++Q L +++N+LVG L + +NL D NN LVGAIP
Sbjct: 200 FSGPVPSSLGN---ITTLQELYLNDNNLVGTL--PVTLNNLENLVYLDVRNNSLVGAIP- 253
Query: 257 FNFVFSLRI--LRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITS--ATLK 312
+FV +I + L +NQ +G LP L +S L E L GP+ S L
Sbjct: 254 LDFVSCKQIDTISLSNNQFTGGLPPGLGNCTS--LREFGAFSCALSGPIPSCFGQLTKLD 311
Query: 313 KVNLSSNKLSGSLPARVGHC-TIVDLS--NNRLSGDLSRMQNWGNYVEDIHLSSNFLTGM 369
+ L+ N SG +P +G C +++DL N+L G++ + ++ +HL +N L+G
Sbjct: 312 TLYLAGNHFSGRIPPELGKCKSMIDLQLQQNQLEGEIPGELGMLSQLQYLHLYTNNLSGE 371
Query: 370 VPNQTSQFLRLTSFKVSNNSLEGDLPAVL-----------------GTYPE-------LK 405
VP + L S ++ N+L G+LP + G P+ L+
Sbjct: 372 VPLSIWKIQSLQSLQLYQNNLSGELPVDMTELKQLVSLALYENHFTGVIPQDLGANSSLE 431
Query: 406 VIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLP--------LQEI---QNN---- 450
V+DL+ N G + P+ + KL L L N G +P L+ + +NN
Sbjct: 432 VLDLTRNMFTGHIPPNLCSQKKLKRLLLGYNYLEGSVPSDLGGCSTLERLILEENNLRGG 491
Query: 451 -PSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPN--GL 507
P QNL DL+ N+ +G + P + N+ + LS+N+ GSIP L + L
Sbjct: 492 LPDFVEKQNLLF--FDLSGNNFTGPIPPSLGNLKNVTAIYLSSNQLSGSIPPELGSLVKL 549
Query: 508 KEFNVSFNNLSGVVPENLRN 527
+ N+S N L G++P L N
Sbjct: 550 EHLNLSHNILKGILPSELSN 569
|
Possible role in short-day photoperiod floral induction. Ipomoea nil (taxid: 35883) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 832 | ||||||
| 359479317 | 1020 | PREDICTED: probable inactive receptor ki | 0.986 | 0.804 | 0.705 | 0.0 | |
| 147798821 | 1020 | hypothetical protein VITISV_007077 [Viti | 0.986 | 0.804 | 0.704 | 0.0 | |
| 224131750 | 966 | predicted protein [Populus trichocarpa] | 0.924 | 0.796 | 0.650 | 0.0 | |
| 449516095 | 1017 | PREDICTED: probable inactive receptor ki | 0.984 | 0.805 | 0.622 | 0.0 | |
| 449452666 | 1017 | PREDICTED: probable inactive receptor ki | 0.984 | 0.805 | 0.622 | 0.0 | |
| 297822319 | 1022 | ATP binding protein [Arabidopsis lyrata | 0.979 | 0.797 | 0.582 | 0.0 | |
| 357493593 | 1022 | Receptor-like protein kinase BRI1-like p | 0.957 | 0.779 | 0.589 | 0.0 | |
| 356553668 | 1055 | PREDICTED: probable inactive receptor ki | 0.968 | 0.763 | 0.588 | 0.0 | |
| 356499271 | 1003 | PREDICTED: probable inactive receptor ki | 0.968 | 0.803 | 0.593 | 0.0 | |
| 145360375 | 1020 | Leucine-rich repeat protein kinase-like | 0.963 | 0.786 | 0.572 | 0.0 |
| >gi|359479317|ref|XP_002270284.2| PREDICTED: probable inactive receptor kinase At5g10020-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1093 bits (2827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 582/825 (70%), Positives = 671/825 (81%), Gaps = 4/825 (0%)
Query: 1 MQTVSLIVLLLVVNALGQSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGI 60
M + LI LLLV A+GQSDF AL++LKKGI KDPSG ++DSWD+KSL+SDGCP NWFGI
Sbjct: 1 MHSTCLIFLLLVELAVGQSDFGALIELKKGIQKDPSG-VLDSWDSKSLASDGCPENWFGI 59
Query: 61 TCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDL 120
C+ G+V SI LND+G+VG+F F I GLKML N+SVSNN G I D+GSI+SL +LDL
Sbjct: 60 ICSEGHVISITLNDLGIVGDFHFTAITGLKMLQNLSVSNNLFTGTIEDVGSIESLAYLDL 119
Query: 121 SHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHL 180
SHN FHGLIPS + L+NL+LLN+SSN+FEG P+GFG L KLKY+D RAN F GDIM L
Sbjct: 120 SHNAFHGLIPSDLTHLENLVLLNLSSNNFEGKGPTGFGDLEKLKYIDFRANGFSGDIMRL 179
Query: 181 LSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNL 240
LS+LGSVVHVDLS+NQFSGSLDLGLG SSF+SSIQY NIS NSLVG+LF HDGMPYFD+L
Sbjct: 180 LSELGSVVHVDLSSNQFSGSLDLGLGKSSFVSSIQYFNISCNSLVGQLFAHDGMPYFDSL 239
Query: 241 EVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLE 300
EVFDASNN LVGAIPSFNFV SL+ILRLG N L+GSLP AL QESSM+LSELDL LNQLE
Sbjct: 240 EVFDASNNQLVGAIPSFNFVVSLQILRLGRNHLTGSLPEALFQESSMILSELDLGLNQLE 299
Query: 301 GPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIH 360
GPVGSITSATLK +NLSSN+L+G LPARVGHC+I+DLSNN LSG+LSRMQ+WGNYVE I
Sbjct: 300 GPVGSITSATLKNLNLSSNRLTGLLPARVGHCSIIDLSNNMLSGNLSRMQSWGNYVEIID 359
Query: 361 LSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLP 420
LSSN LTG +PNQTSQFLRL S K+SNNSL G LP VLGTY ELKVIDLSLN L GFLLP
Sbjct: 360 LSSNKLTGTLPNQTSQFLRLISLKLSNNSLGGSLPPVLGTYQELKVIDLSLNQLTGFLLP 419
Query: 421 SFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGIS 480
SFF ST+LTDLNLSGNN +G +PLQ I + PS GSTQNLSL SLDL+ NSLSG L IS
Sbjct: 420 SFFNSTRLTDLNLSGNNLTGSIPLQAIPDIPSIGSTQNLSLVSLDLSGNSLSGHLPQEIS 479
Query: 481 KFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFPDSAFHPGNSLL 540
FH LVYLNLSNN FEGSIPD LP+GLK F+VS+NNLSG+VPENLR FPDSAFHPGNSLL
Sbjct: 480 GFHELVYLNLSNNLFEGSIPDDLPDGLKGFSVSYNNLSGIVPENLRRFPDSAFHPGNSLL 539
Query: 541 TFPNSPSQQD-VPDLTLRGHG-NHMKPATKIALIVGLVCGVTMVALLCMLIYFRALWQRH 598
FP+SPS + PDL LRG G +HMKPA + ALI GLV GV+M+ALL ++I + A W
Sbjct: 540 AFPHSPSSSNAAPDLDLRGQGSSHMKPAVRAALIAGLVGGVSMIALLFVMICYGAHWVEC 599
Query: 599 GRDSFKRDGEQKAFSEGSSSLSQRSGVNKKGDPSLSSFTFHQDPLPSSPMESAYDAGETS 658
RDS K +G +K + +SS S ++K DPS++S +F QD SS + ++ G S
Sbjct: 600 SRDSLKGNGMKKGTEKETSSDLHTSALHKILDPSITSSSFPQDNTSSSHLGYEHEHGIIS 659
Query: 659 SVVTKPKELYHPDSVRKDEGLSSPVSLLSSSNPSQSKNS-RFTKNSDVLNACSPEKLAGD 717
V KP + P+ +R+DEG+SSP+SLLS SNPS SK+ R +N DVL CSP+KLAGD
Sbjct: 660 LVTKKPSDGSPPEPIREDEGISSPISLLSPSNPSPSKSPYRPDENPDVLKVCSPDKLAGD 719
Query: 718 LHLFDVSLMFTAEELSHAPAEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAR 777
LHLFD SL+ T+EELSHAPAEVIGRSCHGTLYKATLDSG +LAVK LREGIAKG+KEF+R
Sbjct: 720 LHLFDGSLVVTSEELSHAPAEVIGRSCHGTLYKATLDSGHVLAVKWLREGIAKGRKEFSR 779
Query: 778 EVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQSLAVYLQ 822
E KKLGNIKHPNLVSLQGYYWG +EHEKL+ISN+INA LA+YL
Sbjct: 780 EAKKLGNIKHPNLVSLQGYYWGLREHEKLIISNFINAPCLALYLH 824
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147798821|emb|CAN67610.1| hypothetical protein VITISV_007077 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1090 bits (2819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/825 (70%), Positives = 670/825 (81%), Gaps = 4/825 (0%)
Query: 1 MQTVSLIVLLLVVNALGQSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGI 60
M + LI LLLV A+GQSDF AL++LKKGI KDPSG ++DSWD+KSL+SDGCP NWFGI
Sbjct: 1 MHSTCLIFLLLVELAVGQSDFGALIELKKGIQKDPSG-VLDSWDSKSLASDGCPENWFGI 59
Query: 61 TCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDL 120
C+ G+V SI LND+G+VG+F F I GLKML N+SVSNN G I D+GSI+SL +LDL
Sbjct: 60 ICSEGHVISITLNDLGIVGDFHFTAITGLKMLQNLSVSNNLFTGTIEDVGSIESLAYLDL 119
Query: 121 SHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHL 180
SHN FHGLIPS + L+NL+LLN+SSN+FEG P+GFG L KLKY+D RAN F GDIM L
Sbjct: 120 SHNAFHGLIPSDLTHLENLVLLNLSSNNFEGKGPTGFGDLEKLKYIDFRANGFSGDIMRL 179
Query: 181 LSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNL 240
LS+LGSVVHVDLS+NQFSGSLDLGLG SSF+SSIQY NIS NSLVG+LF HDGMPYFD+L
Sbjct: 180 LSELGSVVHVDLSSNQFSGSLDLGLGKSSFVSSIQYFNISCNSLVGQLFAHDGMPYFDSL 239
Query: 241 EVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLE 300
EVFDASNN LVGAIPSFNFV SL+ILRLG N L+GSLP AL QESSM+LSELDL LNQLE
Sbjct: 240 EVFDASNNQLVGAIPSFNFVVSLQILRLGRNHLTGSLPEALFQESSMILSELDLGLNQLE 299
Query: 301 GPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIH 360
GPVGSITSATLK +NLSSN+L+G LPARVGHC+I+DLSNN LSG+LSRMQ+WGNYVE I
Sbjct: 300 GPVGSITSATLKNLNLSSNRLTGLLPARVGHCSIIDLSNNMLSGNLSRMQSWGNYVEIID 359
Query: 361 LSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLP 420
LSSN LTG +PNQTSQFLRL S K+SNNSL G LP VLGTY ELKVIDLSLN L GFLLP
Sbjct: 360 LSSNKLTGTLPNQTSQFLRLISLKLSNNSLGGSLPPVLGTYQELKVIDLSLNQLTGFLLP 419
Query: 421 SFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGIS 480
SFF ST+LTDLNLSGNN +G +PLQ I + PS STQNLSL SLDL+ NSLSG L IS
Sbjct: 420 SFFNSTRLTDLNLSGNNLTGSIPLQAIPDIPSIXSTQNLSLVSLDLSGNSLSGHLPQEIS 479
Query: 481 KFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFPDSAFHPGNSLL 540
FH LVYLNLSNN FEGSIPD LP+GLK F+VS+NNLSG+VPENLR FPDSAFHPGNSLL
Sbjct: 480 GFHELVYLNLSNNLFEGSIPDDLPDGLKGFSVSYNNLSGIVPENLRRFPDSAFHPGNSLL 539
Query: 541 TFPNSPSQQD-VPDLTLRGHG-NHMKPATKIALIVGLVCGVTMVALLCMLIYFRALWQRH 598
FP+SPS + PDL LRG G +HMKPA + ALI GLV GV+M+ALL ++I + A W
Sbjct: 540 AFPHSPSSSNAAPDLDLRGQGSSHMKPAVRAALIAGLVGGVSMIALLFVMICYGAHWVEC 599
Query: 599 GRDSFKRDGEQKAFSEGSSSLSQRSGVNKKGDPSLSSFTFHQDPLPSSPMESAYDAGETS 658
RDS K +G +K + +SS S ++K DPS++S +F QD SS + ++ G S
Sbjct: 600 SRDSLKGNGMKKGTEKETSSDLHTSALHKILDPSITSSSFPQDNTSSSHLGYEHEHGIIS 659
Query: 659 SVVTKPKELYHPDSVRKDEGLSSPVSLLSSSNPSQSKNS-RFTKNSDVLNACSPEKLAGD 717
V KP + P+ +R+DEG+SSP+SLLS SNPS SK+ R +N DVL CSP+KLAGD
Sbjct: 660 LVTKKPSDGSPPEPIREDEGISSPISLLSPSNPSPSKSPYRPDENPDVLKVCSPDKLAGD 719
Query: 718 LHLFDVSLMFTAEELSHAPAEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAR 777
LHLFD SL+ T+EELSHAPAEVIGRSCHGTLYKATLDSG +LAVK LREGIAKG+KEF+R
Sbjct: 720 LHLFDGSLVVTSEELSHAPAEVIGRSCHGTLYKATLDSGHVLAVKWLREGIAKGRKEFSR 779
Query: 778 EVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQSLAVYLQ 822
E KKLGNIKHPNLVSLQGYYWG +EHEKL+ISN+INA LA+YL
Sbjct: 780 EAKKLGNIKHPNLVSLQGYYWGLREHEKLIISNFINAPCLALYLH 824
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224131750|ref|XP_002328099.1| predicted protein [Populus trichocarpa] gi|222837614|gb|EEE75979.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 997 bits (2577), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/824 (65%), Positives = 626/824 (75%), Gaps = 55/824 (6%)
Query: 1 MQTVSLIVLLLVVNALGQSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGI 60
MQT+ LI+LLLVV ALGQSDF+ALL+L+KG KDPSG++ DSWD+KSL+SDGCP+ W+G+
Sbjct: 1 MQTICLILLLLVVAALGQSDFKALLELRKGFEKDPSGKVFDSWDSKSLASDGCPQTWYGV 60
Query: 61 TCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDL 120
C NG+V SI LND+GLVGNFSFP + G KML N+SVSNNQLMG I+++GSI+SLEFLDL
Sbjct: 61 ICVNGHVVSITLNDVGLVGNFSFPVLAGFKMLRNLSVSNNQLMGTISNVGSIESLEFLDL 120
Query: 121 SHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHL 180
S N FHG +PSG+ LKNL+LLN+SSN+FEG PSGFG L L+YLDLR N F GDIM L
Sbjct: 121 SSNFFHGFVPSGVSKLKNLVLLNLSSNNFEGLVPSGFGNLESLEYLDLRHNSFSGDIMGL 180
Query: 181 LSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNL 240
LSQL VVHVDLS+NQFSGSLDLGLG++SF+SSI+YLN+S N LVG+LF HDG+PYFD+L
Sbjct: 181 LSQLDIVVHVDLSSNQFSGSLDLGLGNASFVSSIKYLNVSHNYLVGQLFAHDGVPYFDSL 240
Query: 241 EVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLE 300
EVFD SNN + GAIP F FV SLRILRLG NQLSGSLP ALLQ+SSM+L+ELDLSLNQLE
Sbjct: 241 EVFDVSNNQITGAIPPFKFVVSLRILRLGGNQLSGSLPEALLQDSSMVLTELDLSLNQLE 300
Query: 301 GPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIH 360
GPVGSITS TL+K+N+SSNKLSG LPA GHC +DLSNN L+G+LSR+QNWGNYVE I
Sbjct: 301 GPVGSITSTTLRKMNISSNKLSGPLPATAGHCATIDLSNNMLTGNLSRIQNWGNYVEVIQ 360
Query: 361 LSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLP 420
LSSN LTG +PNQTSQFLRLT+ K+SNNSL GDLP VLGTY ELKVIDLSLN L GFLLP
Sbjct: 361 LSSNSLTGTLPNQTSQFLRLTTLKISNNSLNGDLPPVLGTYSELKVIDLSLNFLTGFLLP 420
Query: 421 SFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGIS 480
FFTST LTDLNLS NNF+G +PLQE+ + S +NLSL SLDL++NSL G L P IS
Sbjct: 421 DFFTSTTLTDLNLSANNFTGEIPLQEVHD-----SRENLSLVSLDLSHNSLEGSLPPEIS 475
Query: 481 KFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFPDSAFHPGNSLL 540
KFHNLVYLNLSNNK +GSIP LP+GLK F+VS NN SGVVP+NLR FPDSAFHPGNSLL
Sbjct: 476 KFHNLVYLNLSNNKLKGSIPGDLPDGLKGFDVSSNNFSGVVPDNLRRFPDSAFHPGNSLL 535
Query: 541 TFPNSPSQQDVPD--LTLRGHGNHMKPATKIALIVGLVCGVTMVALLCMLIYFRALWQRH 598
FP PS P + L+G + MKPA KIALI +V T++ALL M+IY+R H
Sbjct: 536 IFPYFPSSSKGPPALVNLKGGRSRMKPAIKIALIASMVGAATIIALLSMVIYYRTHRPTH 595
Query: 599 GRDSFKRDGEQKAFSEGSSSLSQRSGVNKKGDPSLSSFTFHQDPLPSSPMESAYDAGETS 658
G S K D + + S S VNK S +S +FHQ S
Sbjct: 596 GTRSLKGDERSEGVPQEEGSSISSSRVNKNPSQSSASLSFHQ-----------------S 638
Query: 659 SVVTKPKELYHPDSVRKDEGLSSPVSLLSSSNPSQSKNSRFTKNSDVLNACSPEKLAGDL 718
+ +T+ + LSS P VL SP+KLAG+L
Sbjct: 639 NSLTQ-------------------MGPLSSDTPG------------VLRVRSPDKLAGNL 667
Query: 719 HLFDVSLMFTAEELSHAPAEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFARE 778
HLFD SL FTAEELS APAEV+GRSCHG LYKATLDSG ++A+K L+EGIAKGKK+FARE
Sbjct: 668 HLFDGSLTFTAEELSCAPAEVVGRSCHGALYKATLDSGYVMAIKWLKEGIAKGKKDFARE 727
Query: 779 VKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQSLAVYLQ 822
VKKLG+I+HPNLVSLQGYYWGPK+HEK++I+ YINAQ LA YLQ
Sbjct: 728 VKKLGSIRHPNLVSLQGYYWGPKDHEKMIITKYINAQCLAFYLQ 771
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449516095|ref|XP_004165083.1| PREDICTED: probable inactive receptor kinase At5g10020-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 925 bits (2391), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/824 (62%), Positives = 619/824 (75%), Gaps = 5/824 (0%)
Query: 1 MQTVSLIVLL-LVVNALGQSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFG 59
MQ LI+LL L+VN LGQSDF ALL+LKKGI KD SG++ DSWD+ SL SDGCP NWFG
Sbjct: 1 MQVTCLIILLFLLVNVLGQSDFAALLELKKGIIKDSSGKL-DSWDSMSLDSDGCPSNWFG 59
Query: 60 ITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLD 119
I C NG VTS+ ++ GLVG+F F I GL +L N+S+SNNQ G I +G +SLEFLD
Sbjct: 60 IVCVNGRVTSLTFDNAGLVGDFDFSAITGLSLLRNLSLSNNQFTGTIAKVGLFKSLEFLD 119
Query: 120 LSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMH 179
LS N F G +PS ++ L NL+ LN SSN FEG FP+GFG L LKY+D+ N F GDI
Sbjct: 120 LSRNRFRGTVPSLLIGLVNLVSLNFSSNQFEGAFPTGFGKLADLKYVDVHGNGFSGDITG 179
Query: 180 LLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDN 239
LSQ+GSVV+VDLS+N+F+GS+D G+G+ SFISSI+YLNIS N L G LFPHDGMPYFD+
Sbjct: 180 FLSQMGSVVYVDLSSNRFTGSMDAGVGNPSFISSIRYLNISHNLLTGVLFPHDGMPYFDS 239
Query: 240 LEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQL 299
LEVFDASNN VG IP FNFV SL+ L LG N+LSGSLP ALL++ SM+L+ELDLSLN+L
Sbjct: 240 LEVFDASNNQFVGNIPDFNFVVSLQTLILGRNKLSGSLPEALLRDRSMLLTELDLSLNEL 299
Query: 300 EGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDI 359
+GPVGSITS TLKK+N+SSNKL+GSLP VG C ++DLSNN LSGDLSR+Q+WGN+VE I
Sbjct: 300 QGPVGSITSTTLKKLNISSNKLTGSLPTMVGRCAVIDLSNNMLSGDLSRIQSWGNHVEVI 359
Query: 360 HLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLL 419
LSSN LTG + N++SQFLRL +SNNSLEG LP VLGTYPEL+VIDLS N LNG +
Sbjct: 360 QLSSNSLTGTLSNKSSQFLRLALLNISNNSLEGVLPTVLGTYPELEVIDLSHNRLNGPVP 419
Query: 420 PSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGI 479
+ F S KLTDLNLSGNNF+GP+PL E ++ S+ S Q+ SL SLDL+ NSL+GRL +
Sbjct: 420 STLFHSLKLTDLNLSGNNFTGPIPLYESIDSTSSSSLQSSSLKSLDLSRNSLTGRLPVEL 479
Query: 480 SKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFPDSAFHPGNSL 539
SK ++LVYLNLS N F+G IPD LPN LK F+VSFNNLSG VP NL F DSAFHPGNSL
Sbjct: 480 SKLNSLVYLNLSKNYFDGIIPDNLPNSLKGFDVSFNNLSGEVPGNLMRFSDSAFHPGNSL 539
Query: 540 LTFPNSPSQQD-VPDLTLRGHGNHMKPATKIALIVGLVCGVTMVALLCMLIYFRALWQRH 598
L FP+SPS P L H MKP KI LI GL+ V L C+++Y+RA QR
Sbjct: 540 LNFPSSPSTPGYFPGLPSTMHRARMKPVVKIVLIAGLIVVAAFVVLFCIILYYRA--QRL 597
Query: 599 GRDSFKRDGEQKAFSEGSSSLSQRSGVNKKGDPSLSSFTFHQDPLPSSPMESAYDAGETS 658
R S + ++ E +SS++ +S +KK + S+ F QD LP S + G+
Sbjct: 598 DRRSTSTNNAKEGAVEEASSVTSQSETDKKKNASIPPSGFRQDFLPPSHRVESRVGGDIW 657
Query: 659 SVVTKPKELYHPDSVRKDEGLSSPVSLLSSSNPSQSKNSRFTKNSDVLNACSPEKLAGDL 718
SV K ++ + +S+ K EG+SSP+S +SSSNPS SK + + L SP+KLAGDL
Sbjct: 658 SVSDKARDFGYHESLGKGEGISSPMSFMSSSNPSPSKMQQHLDHPRALKVRSPDKLAGDL 717
Query: 719 HLFDVSLMFTAEELSHAPAEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFARE 778
HLFD SLMFTAEELS APAEV+G+SCHGTLYKATLDSG +LAVK LREG+AKGKKEFARE
Sbjct: 718 HLFDGSLMFTAEELSRAPAEVVGKSCHGTLYKATLDSGHVLAVKWLREGMAKGKKEFARE 777
Query: 779 VKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQSLAVYLQ 822
VKKLG+IKHPNLVS+ GYYWGP++HEKLVIS +INAQSLA YLQ
Sbjct: 778 VKKLGSIKHPNLVSINGYYWGPRDHEKLVISTFINAQSLAFYLQ 821
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452666|ref|XP_004144080.1| PREDICTED: probable inactive receptor kinase At5g10020-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 925 bits (2391), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/824 (62%), Positives = 619/824 (75%), Gaps = 5/824 (0%)
Query: 1 MQTVSLIVLL-LVVNALGQSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFG 59
MQ LI+LL L+VN LGQSDF ALL+LKKGI KD SG++ DSWD+ SL SDGCP NWFG
Sbjct: 1 MQVTCLIILLFLLVNVLGQSDFAALLELKKGIIKDSSGKL-DSWDSMSLDSDGCPSNWFG 59
Query: 60 ITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLD 119
I C NG VTS+ ++ GLVG+F F I GL +L N+S+SNNQ G I +G +SLEFLD
Sbjct: 60 IVCVNGRVTSLTFDNAGLVGDFDFSAITGLSLLRNLSLSNNQFTGTIAKVGLFKSLEFLD 119
Query: 120 LSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMH 179
LS N F G +PS ++ L NL+ LN SSN FEG FP+GFG L LKY+D+ N F GDI
Sbjct: 120 LSRNRFRGTVPSLLIGLVNLVSLNFSSNQFEGAFPTGFGKLADLKYVDVHGNGFSGDITG 179
Query: 180 LLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDN 239
LSQ+GSVV+VDLS+N+F+GS+D G+G+ SFISSI+YLNIS N L G LFPHDGMPYFD+
Sbjct: 180 FLSQMGSVVYVDLSSNRFTGSMDAGVGNPSFISSIRYLNISHNLLTGVLFPHDGMPYFDS 239
Query: 240 LEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQL 299
LEVFDASNN VG IP FNFV SL+ L LG N+LSGSLP ALL++ SM+L+ELDLSLN+L
Sbjct: 240 LEVFDASNNQFVGNIPDFNFVVSLQTLILGRNKLSGSLPEALLRDRSMLLTELDLSLNEL 299
Query: 300 EGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDI 359
+GPVGSITS TLKK+N+SSNKL+GSLP VG C ++DLSNN LSGDLSR+Q+WGN+VE I
Sbjct: 300 QGPVGSITSTTLKKLNISSNKLTGSLPTMVGRCAVIDLSNNMLSGDLSRIQSWGNHVEVI 359
Query: 360 HLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLL 419
LSSN LTG + N++SQFLRL +SNNSLEG LP VLGTYPEL+VIDLS N LNG +
Sbjct: 360 QLSSNSLTGTLSNKSSQFLRLALLNISNNSLEGVLPTVLGTYPELEVIDLSHNRLNGPVP 419
Query: 420 PSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGI 479
+ F S KLTDLNLSGNNF+GP+PL E ++ S+ S Q+ SL SLDL+ NSL+GRL +
Sbjct: 420 STLFHSLKLTDLNLSGNNFTGPIPLYESIDSTSSSSLQSSSLKSLDLSRNSLTGRLPVEL 479
Query: 480 SKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFPDSAFHPGNSL 539
SK ++LVYLNLS N F+G IPD LPN LK F+VSFNNLSG VP NL F DSAFHPGNSL
Sbjct: 480 SKLNSLVYLNLSKNYFDGIIPDNLPNSLKGFDVSFNNLSGKVPGNLMRFSDSAFHPGNSL 539
Query: 540 LTFPNSPSQQD-VPDLTLRGHGNHMKPATKIALIVGLVCGVTMVALLCMLIYFRALWQRH 598
L FP+SPS P L H MKP KI LI GL+ V L C+++Y+RA QR
Sbjct: 540 LNFPSSPSTPGYFPGLPSTMHRARMKPVVKIVLIAGLIVVAAFVVLFCIILYYRA--QRL 597
Query: 599 GRDSFKRDGEQKAFSEGSSSLSQRSGVNKKGDPSLSSFTFHQDPLPSSPMESAYDAGETS 658
R S + ++ E +SS++ +S +KK + S+ F QD LP S + G+
Sbjct: 598 DRRSTSTNNAKEGAVEEASSVTSQSETDKKKNASIPPSGFRQDFLPPSHRVESRVGGDIW 657
Query: 659 SVVTKPKELYHPDSVRKDEGLSSPVSLLSSSNPSQSKNSRFTKNSDVLNACSPEKLAGDL 718
SV K ++ + +S+ K EG+SSP+S +SSSNPS SK + + L SP+KLAGDL
Sbjct: 658 SVSDKARDFGYHESLGKGEGISSPMSFMSSSNPSPSKMQQHLDHPRALKVRSPDKLAGDL 717
Query: 719 HLFDVSLMFTAEELSHAPAEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFARE 778
HLFD SLMFTAEELS APAEV+G+SCHGTLYKATLDSG +LAVK LREG+AKGKKEFARE
Sbjct: 718 HLFDGSLMFTAEELSRAPAEVVGKSCHGTLYKATLDSGHVLAVKWLREGMAKGKKEFARE 777
Query: 779 VKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQSLAVYLQ 822
VKKLG+IKHPNLVS+ GYYWGP++HEKLVIS +INAQSLA YLQ
Sbjct: 778 VKKLGSIKHPNLVSINGYYWGPRDHEKLVISTFINAQSLAFYLQ 821
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297822319|ref|XP_002879042.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata] gi|297324881|gb|EFH55301.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 913 bits (2360), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/839 (58%), Positives = 614/839 (73%), Gaps = 24/839 (2%)
Query: 1 MQTVSLIVLLLV---VNALGQSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNW 57
MQ + ++ LLV ++ G SDFEALL+LKKG DP G+++ SWD K+LS+D CP NW
Sbjct: 1 MQIICSMIFLLVMMMISVSGFSDFEALLELKKGFQSDPFGKVLASWDAKALSTDRCPLNW 60
Query: 58 FGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEF 117
+G+TC++G VTSI LN +GL+GNFSFP I+GL+ML N+S+SNNQ G +++IGS +SL++
Sbjct: 61 YGVTCSSGGVTSIELNGLGLLGNFSFPVIVGLRMLQNLSISNNQFAGTLSNIGSFKSLKY 120
Query: 118 LDLSHNLFHGLIPSGIVSLKNLMLLNIS-SNSFEGTFPSGFGGLGKLKYLDLRANRFGGD 176
LD+S NLF G +PSGI +L+NL +N+S +N+ G P+GFG L KL+YLDL+ N F G+
Sbjct: 121 LDVSGNLFRGSLPSGIENLRNLEFVNLSGNNNLGGVVPAGFGSLQKLQYLDLQGNSFSGE 180
Query: 177 IMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPY 236
+M L SQL SV +VD+S N FSGSLDLGL SSF+SSI+YLN+S NSLVGELF HDG+P+
Sbjct: 181 VMSLFSQLISVEYVDISRNNFSGSLDLGLAKSSFVSSIRYLNVSGNSLVGELFAHDGIPF 240
Query: 237 FDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSL 296
FD+LEV DAS+N L G++P F+FV SL+ILRL NQLS SLP LLQESS +L+ELDLSL
Sbjct: 241 FDSLEVLDASSNRLSGSVPVFSFVVSLKILRLQDNQLSASLPPGLLQESSTILTELDLSL 300
Query: 297 NQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYV 356
NQLEGPVGSITS+TL+K+NLSSN+LSGSLP +VGHC I+DLSNN++SGDLSR+QNWG+ +
Sbjct: 301 NQLEGPVGSITSSTLEKLNLSSNRLSGSLPLKVGHCAIIDLSNNKISGDLSRIQNWGDSI 360
Query: 357 EDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNG 416
E I LSSN LTG +P QTSQFLRLTS +V+NNSLEG LP +LGTYPELK IDLS N LNG
Sbjct: 361 EIIRLSSNSLTGTLPGQTSQFLRLTSLEVANNSLEGVLPFILGTYPELKGIDLSHNQLNG 420
Query: 417 FLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLL 476
L + F S KLTDLNLS NNFSG LPLQ+ + NLSLT++ L++NSL G L
Sbjct: 421 VLPSNLFISAKLTDLNLSNNNFSGSLPLQD------ASTAGNLSLTNIGLSHNSLGGVLS 474
Query: 477 PGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFPDSAFHPG 536
+++FHNL+ L+LS N FEG+IPDGLP+ LK F VS NNLSG VPENLR FPDSAFHPG
Sbjct: 475 EELTRFHNLISLDLSYNNFEGNIPDGLPDSLKVFTVSANNLSGNVPENLRRFPDSAFHPG 534
Query: 537 NSLLTFPNSP-SQQDVPDLTLRGHGNHMKPATKIALIVGLVCGVTMVALLCMLIYFRALW 595
N+LL P SP + D D+TLR H HMK + K ALI+GLV G ++AL+C + +F +
Sbjct: 535 NALLNVPVSPETPVDKTDMTLRKHRYHMKSSVKAALIIGLVVGAALLALVCAMFHFMSRK 594
Query: 596 QRHGRDSFKRDGE----QKAFSEGSSSLSQRSGVNKKGDPSLSSFTFH---QDPLPSSPM 648
Q H + GE QK S+ ++ ++ V + S ++ T + P+ SS
Sbjct: 595 Q-HDEEKSDVTGEKSIVQKTEPSSSNVIAAKNSVQENESSSSTTSTPSIKAKLPVSSSRF 653
Query: 649 ESAYDAGETSSVVTKPKELYHPDSVRKDEGLSSPVSLLSSSNPSQSKNSRFTKNSDVLNA 708
D+ +S + +P E H DS RKDE LSS V SS PS K N +
Sbjct: 654 SQYSDSENSSPFLKEPTEELHSDSTRKDETLSSQV---PSSTPSLPKIQNSPDNPR--SR 708
Query: 709 CSPEKLAGDLHLFDVSLMFTAEELSHAPAEVIGRSCHGTLYKATLDSGSILAVKRLREGI 768
+ +L G+L++FD SL TAEELS APAE IGRSCHGTLY+A L+S S+LAVK LREG
Sbjct: 709 QTSMRLDGNLYIFDSSLKLTAEELSRAPAEAIGRSCHGTLYRAVLNSDSVLAVKWLREGT 768
Query: 769 AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQSLAVYLQGKGLV 827
AKGKKEFARE+KK+GNI HPNLVSLQ YYWGPKEHEKL+IS Y++A LA YLQ G +
Sbjct: 769 AKGKKEFAREIKKIGNINHPNLVSLQAYYWGPKEHEKLIISRYMDAPCLAFYLQEAGQI 827
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357493593|ref|XP_003617085.1| Receptor-like protein kinase BRI1-like protein [Medicago truncatula] gi|355518420|gb|AET00044.1| Receptor-like protein kinase BRI1-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 911 bits (2354), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/823 (58%), Positives = 598/823 (72%), Gaps = 26/823 (3%)
Query: 1 MQTVSLIVLLLVVNALGQSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGI 60
MQ + L++LLLV A G D +ALL+LKKGI DP G +++SWD+KSL S+GCP+NW+GI
Sbjct: 28 MQAIWLMLLLLVNTAFGNRDIDALLELKKGIQNDPFGLVLNSWDSKSLESNGCPQNWYGI 87
Query: 61 TCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDL 120
C+ G V SI L++ LVG F+F I L ML N+SV NN G++ I ++SL+FLDL
Sbjct: 88 LCSEGNVISITLDNASLVGEFNFLAISNLPMLHNLSVVNNHFTGSMLHISPMKSLKFLDL 147
Query: 121 SHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHL 180
S N F+G +P V L++L+ LN+S N F GT P+ F L +L+YLD +N F GDIM +
Sbjct: 148 SLNKFNGSLPPSFVELRSLVYLNLSLNEFSGTVPNVFHKLDQLEYLDFHSNSFSGDIMEI 207
Query: 181 LSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNL 240
Q+GSV+HVDLSNN+FSG+LDLGLGD SF+ SIQ+LN+S NSLVGELF HDGMPY DNL
Sbjct: 208 FYQMGSVLHVDLSNNKFSGALDLGLGDVSFLFSIQHLNVSHNSLVGELFAHDGMPYLDNL 267
Query: 241 EVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLE 300
EVFDASNN LVG IPSF FV SLRILRL NQL+GSLP LL+ESSMMLSELDLS N+LE
Sbjct: 268 EVFDASNNQLVGNIPSFTFVVSLRILRLACNQLTGSLPETLLKESSMMLSELDLSQNKLE 327
Query: 301 GPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIH 360
G +GSITS TL+K+N+SSNKLSG LP +V HC I+DLSNN LSG+LSR++ WGNYVE I
Sbjct: 328 GFIGSITSMTLRKLNISSNKLSGPLPLKVSHCAIIDLSNNMLSGNLSRIKYWGNYVEVIQ 387
Query: 361 LSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLP 420
LS N L+G +PN+TSQ LRLTS KVSNNSLEG LP VLGTYPELK IDLSLN L+GFLLP
Sbjct: 388 LSKNSLSGTLPNETSQLLRLTSLKVSNNSLEGFLPPVLGTYPELKEIDLSLNRLSGFLLP 447
Query: 421 SFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGIS 480
+ F STKLT+LNLS N FSGP+P + N S +N SL LDL+ N+LSG L I
Sbjct: 448 TLFASTKLTNLNLSNNMFSGPIPFELQLPNNLLVSAENFSLMYLDLSNNNLSGILSSKIK 507
Query: 481 KFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFPDSAFHPGNSLL 540
+ HNLVYLNL NNK EG+IP+ LP+ L+E NVSFNN SGVVP+NL FP+SAFHPGN++L
Sbjct: 508 ELHNLVYLNLCNNKLEGTIPNDLPDELRELNVSFNNFSGVVPDNLSQFPESAFHPGNTML 567
Query: 541 TFPNSP-SQQDVPDLTLRGHGNHMKPATKIALIVGLVCGVTMVALLCMLIYFRALWQRHG 599
FPNS S +D + L G +H K T+ LI +V GV ++A++ +IY+R + Q+ G
Sbjct: 568 IFPNSHLSPKDSSNSNL-GSRSHEKTFTRSVLITCIVTGVFVIAIMAAMIYYR-IHQKKG 625
Query: 600 RDSFKRDGEQKAFSEGSSSLSQRSGVNKKGDPSLSSFTFHQDPLPSSPMESAYDAGETSS 659
S K+D + S+S S+R L S P + D G +
Sbjct: 626 STS-KQDATTSDIIQESTSPSKRRN------------------LESLPPSQSEDTGNINP 666
Query: 660 VVTKPKELYHPDSVRKDEGLSSPVSLLSSSNPSQSKNSRFTKNSDVLNACSPEKLAGDLH 719
V PK+ P+ ++ +EG SSP+S++S+SNPS S + +F +N L SP+KL GDLH
Sbjct: 667 TVQNPKD---PEFIKNEEGTSSPMSIISASNPSPSTSHQF-ENPGSLEVSSPDKLVGDLH 722
Query: 720 LFDVSLMFTAEELSHAPAEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREV 779
LFD SLM TAEELS APAEV+GRSCHGTLYKATL+SG +LAVK LREGI KGKKE ARE+
Sbjct: 723 LFDGSLMLTAEELSCAPAEVVGRSCHGTLYKATLESGHVLAVKWLREGITKGKKELAREI 782
Query: 780 KKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQSLAVYLQ 822
KKLG IKHPNLVS G Y GPKEHE+L++SNY+NA SL +YL
Sbjct: 783 KKLGTIKHPNLVSFLGCYLGPKEHERLIVSNYMNAHSLDIYLH 825
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553668|ref|XP_003545175.1| PREDICTED: probable inactive receptor kinase At5g10020-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 897 bits (2319), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/824 (58%), Positives = 601/824 (72%), Gaps = 18/824 (2%)
Query: 1 MQTVSLIVLLLVVNALGQSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGI 60
MQ + ++LLLV ALG SD ++LL+ KK I DPSG +++SWD++SL SDGCP+NW GI
Sbjct: 1 MQAIWFMLLLLVAIALGNSDIDSLLEFKKSIQNDPSGLVVNSWDSRSLDSDGCPKNWHGI 60
Query: 61 TCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDL 120
C+ G V SI L++ GLVG F+F I GL ML N+S NN G++ I +I+SLE+ DL
Sbjct: 61 VCSEGSVISITLDNAGLVGEFNFLAISGLTMLRNLSAVNNHFTGDLLYIATIESLEYADL 120
Query: 121 SHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHL 180
S N F+G + S L+ L+ LN+SSN GT P F L +LKYLDL N F GDIMH+
Sbjct: 121 SLNKFNGPLLSNFTQLRKLIYLNLSSNELGGTLPIEFHKLEQLKYLDLHMNNFSGDIMHI 180
Query: 181 LSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNL 240
Q+GSV+++DLS N+ SG+ DLGL D SF+SSIQYLNIS NSL GELF HDGMPY DNL
Sbjct: 181 FYQMGSVLYIDLSCNRISGTPDLGLADESFLSSIQYLNISHNSLSGELFAHDGMPYLDNL 240
Query: 241 EVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLE 300
EVFDASNN L G +PSF FV SLRILRL NQL+G LP ALL+ESSMMLSELDLS N+LE
Sbjct: 241 EVFDASNNQLEGNLPSFTFVVSLRILRLACNQLTGLLPEALLKESSMMLSELDLSQNKLE 300
Query: 301 GPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIH 360
GP+G ITS TL+K+NLSSNKL G LP RVGHC+I+DLSNN LSG+ SR++ WGNYVE +
Sbjct: 301 GPIGIITSVTLQKLNLSSNKLYGPLPLRVGHCSIIDLSNNTLSGNFSRIRYWGNYVEVVQ 360
Query: 361 LSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLP 420
LS+N L GM+PN+TSQFLRLT+ KVSNNSLEG LP +LGTYPEL+ IDLSLN L+GF+LP
Sbjct: 361 LSTNSLGGMLPNETSQFLRLTALKVSNNSLEGFLPPILGTYPELEEIDLSLNQLSGFVLP 420
Query: 421 SFFTSTKLTDLNLSGNNFSGPLP-LQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGI 479
SFFTSTKL +LNLS N FSG +P L + NNP S +N SL LDL++N+LSG L +
Sbjct: 421 SFFTSTKLINLNLSNNKFSGSIPILFQPPNNPLV-SAENFSLVFLDLSHNNLSGTLPSNM 479
Query: 480 SKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFPDSAFHPGNSL 539
S+ HNL YLNL NN+ EG+IPD LP+ L+ NVSFNNLSGVVPE+L+ FPDSAFHPGN++
Sbjct: 480 SRLHNLAYLNLCNNQLEGTIPDDLPDELRVLNVSFNNLSGVVPESLKQFPDSAFHPGNTM 539
Query: 540 LTFPNSPSQ-QDVPDLTLRGHGNHMKPATKIALIVGLVCGVTMVALLCMLIYFRALWQRH 598
L FP+S S +D +L LR H H K AT+IALI LV G ++A + ++IY++ H
Sbjct: 540 LVFPHSQSSPKDTSNLGLREHRLHKKSATRIALIACLVAGGFVMAFVAIIIYYKV---HH 596
Query: 599 GRDSFKRDGEQKAFSEGSSSLSQRSGVNKKGDPSLSSFTFHQDPLPSSPMESAYDAGETS 658
++ + E + ++ S+ S ++ + LP + S+ DA
Sbjct: 597 EKERTSKQNEAMSITQESTFTSNTEAPDR-----------NLGALPPAQRGSSDDARNIH 645
Query: 659 SVVTKPKELYHPDSVRKDEGLSSPVSLLSSSNPSQSKNSRFTKNSDVLNACSPEKLAGDL 718
V KP + + + +EG S+P+S+LS SNPS SK+ +F +N L SP+KL GDL
Sbjct: 646 PVGKKPIDPGPFELGKNEEGTSTPMSILSPSNPSSSKSYQF-ENPGSLKVSSPDKLVGDL 704
Query: 719 HLFDVSLMFTAEELSHAPAEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFARE 778
H+FD SL+ T EELS APAEVIGRSCHGTLYKATLDSG LA+K LREGI KGKKE ARE
Sbjct: 705 HIFDGSLVLTVEELSCAPAEVIGRSCHGTLYKATLDSGHELAIKWLREGITKGKKELARE 764
Query: 779 VKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQSLAVYLQ 822
+KKLG IKHPNLVS+QGYY GPKEHEKL+ISNY+NAQSL +YLQ
Sbjct: 765 IKKLGTIKHPNLVSVQGYYLGPKEHEKLIISNYMNAQSLDIYLQ 808
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499271|ref|XP_003518465.1| PREDICTED: probable inactive receptor kinase At5g10020-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 897 bits (2318), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/824 (59%), Positives = 602/824 (73%), Gaps = 18/824 (2%)
Query: 1 MQTVSLIVLLLVVNALGQSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGI 60
MQ + ++ LLV ALG SD +ALL+ KK I DPSG +++SWD++SL SDGCP+NW+GI
Sbjct: 1 MQAIWFMLSLLVAIALGNSDIDALLEFKKSIQNDPSGLVVNSWDSRSLDSDGCPKNWYGI 60
Query: 61 TCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDL 120
C+ G V SI L++ GLVG +F I GL ML N+S NNQ G++ I +I+SLE+LDL
Sbjct: 61 VCSEGSVLSITLDNAGLVGELNFLAINGLTMLRNLSAVNNQFTGDLLHIATIESLEYLDL 120
Query: 121 SHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHL 180
S N F+G + S V L+ L+ LN+SSN GT P F L +LKYLDL N F GDIMH+
Sbjct: 121 SLNKFNGPLLSNFVQLRKLVYLNLSSNELGGTLPVDFHKLEQLKYLDLHMNNFFGDIMHI 180
Query: 181 LSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNL 240
+GSV++VDLS+N+FSG+ DLGL D SF+SSIQYLNIS NSL GELF HDGMPY DNL
Sbjct: 181 FYPMGSVLYVDLSSNRFSGTPDLGLADESFLSSIQYLNISHNSLSGELFVHDGMPYLDNL 240
Query: 241 EVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLE 300
EVFDASNN L G IPSF FV SLRILRL NQL+G LP ALL+ESSMMLSELDLS N+LE
Sbjct: 241 EVFDASNNQLEGNIPSFTFVVSLRILRLACNQLTGLLPEALLKESSMMLSELDLSQNKLE 300
Query: 301 GPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIH 360
GP+G ITS TL+K+NLSSNKL G LP RVGHC+I+DLSNN LSG+ SR++ WGNYVE +
Sbjct: 301 GPIGIITSVTLRKLNLSSNKLYGPLPLRVGHCSIIDLSNNTLSGNFSRIRYWGNYVEVVQ 360
Query: 361 LSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLP 420
LSSN L GM+PN+TSQFLRLTS KVSNNSLEG LP +LGTYPEL+ IDLSLN L+GFLLP
Sbjct: 361 LSSNSLGGMLPNETSQFLRLTSLKVSNNSLEGFLPPILGTYPELEEIDLSLNQLSGFLLP 420
Query: 421 SFFTSTKLTDLNLSGNNFSGPLPLQ-EIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGI 479
SFFTSTKL +L+LS N FSG + +Q + NNP S +N SL LDL++N+LSG L +
Sbjct: 421 SFFTSTKLINLDLSNNKFSGSILIQFQPPNNPIV-SAENCSLVFLDLSHNNLSGTLPSNM 479
Query: 480 SKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFPDSAFHPGNSL 539
S+ HNL YLNL NN+ G+IPD LP+ L+ NVSFNNLSGVVPE+L+ FPDSAFHPGN++
Sbjct: 480 SRLHNLAYLNLCNNQLVGTIPDDLPDELRVLNVSFNNLSGVVPESLKQFPDSAFHPGNTM 539
Query: 540 LTFPN-SPSQQDVPDLTLRGHGNHMKPATKIALIVGLVCGVTMVALLCMLIYFRALWQRH 598
L FP+ PS +D +L LR H K AT+IALI LV G ++A + ++IY++ H
Sbjct: 540 LVFPHLQPSPKDTSNLGLREHRLQKKSATRIALIACLVAGGFVMAFVGIIIYYKV---HH 596
Query: 599 GRDSFKRDGEQKAFSEGSSSLSQRSGVNKKGDPSLSSFTFHQDPLPSSPMESAYDAGETS 658
++ + E + ++ S+ S ++ + + LP + S+ DA
Sbjct: 597 EKERTSKQNEARGITQESTFTS-----------NIEEPYRNLEVLPPAQSGSSDDARNIH 645
Query: 659 SVVTKPKELYHPDSVRKDEGLSSPVSLLSSSNPSQSKNSRFTKNSDVLNACSPEKLAGDL 718
V KP + + + +EG S+P+S+LS SNPS SK+ +F +N L SP+KL GDL
Sbjct: 646 PVGKKPIDFGPSELGKNEEGTSTPMSILSPSNPSSSKSYQF-ENPGSLKVSSPDKLVGDL 704
Query: 719 HLFDVSLMFTAEELSHAPAEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFARE 778
H+FD SL TAEELS APAEVIGRSCHGTLYKATLDSG LAVK LREGI KGKKE ARE
Sbjct: 705 HIFDGSLALTAEELSCAPAEVIGRSCHGTLYKATLDSGHELAVKWLREGITKGKKELARE 764
Query: 779 VKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQSLAVYLQ 822
+KKLG IKHPNLVS+QGYY GPKEHEKL+ISNY+NAQSL +YL
Sbjct: 765 IKKLGTIKHPNLVSVQGYYLGPKEHEKLIISNYMNAQSLDIYLH 808
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145360375|ref|NP_180274.2| Leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] gi|330252837|gb|AEC07931.1| Leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 893 bits (2308), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/845 (57%), Positives = 615/845 (72%), Gaps = 43/845 (5%)
Query: 1 MQTVSLIVLLLVVNAL---GQSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNW 57
MQ + ++ LLV+ + G SDFEALL+LKKG DPS +++ SWD K+LSSD CP NW
Sbjct: 1 MQIICSMIFLLVMMVMKVSGFSDFEALLELKKGFQGDPSRKVLTSWDAKALSSDRCPLNW 60
Query: 58 FGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEF 117
+G+TC++G VTSI LN GL+G+FSFP I+GL+ML N+S++NNQ G +++IGS+ SL++
Sbjct: 61 YGVTCSSGGVTSIDLNGFGLLGSFSFPVIVGLRMLQNLSIANNQFSGTLSNIGSLTSLKY 120
Query: 118 LDLSHNLFHGLIPSGIVSLKNLMLLNIS-SNSFEGTFPSGFGGLGKLKYLDLRANRFGGD 176
LD+S NLFHG +PSGI +L+NL +N+S +N+ G PSGFG L KLKYLDL+ N F G+
Sbjct: 121 LDVSGNLFHGALPSGIENLRNLEFVNLSGNNNLGGVIPSGFGSLAKLKYLDLQGNSFSGE 180
Query: 177 IMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPY 236
+M L SQL SV +VD+S N FSGSLDLGL SSF+SSI++LN+S NSLVGELF HDG+P+
Sbjct: 181 VMSLFSQLISVEYVDISRNNFSGSLDLGLAKSSFVSSIRHLNVSGNSLVGELFAHDGIPF 240
Query: 237 FDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSL 296
FD+LEVFDAS+N L G++P F+FV SL+ILRL NQLS SLP LLQESS +L++LDLSL
Sbjct: 241 FDSLEVFDASSNQLSGSVPVFSFVVSLKILRLQDNQLSASLPPGLLQESSTILTDLDLSL 300
Query: 297 NQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYV 356
NQLEGP+GSITS+TL+K+NLSSN+LSGSLP +VGHC I+DLSNN++SG+LSR+QNWG+ V
Sbjct: 301 NQLEGPIGSITSSTLEKLNLSSNRLSGSLPLKVGHCAIIDLSNNKISGELSRIQNWGDSV 360
Query: 357 EDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNG 416
E I LSSN LTG +P QTSQFLRLTS K +NNSL+G LP +LGTYPELK IDLS N L+G
Sbjct: 361 EIIRLSSNSLTGTLPGQTSQFLRLTSLKAANNSLQGVLPFILGTYPELKEIDLSHNQLSG 420
Query: 417 FLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLL 476
+ + F S KLT+LNLS NNFSG LPLQ+ + NLSLT++ L++NSL G L
Sbjct: 421 VIPSNLFISAKLTELNLSNNNFSGSLPLQD------ASTVGNLSLTNIGLSHNSLGGVLS 474
Query: 477 PGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFPDSAFHPG 536
+++FHNL+ L+LS N FEG+IPDGLP+ LK F VS NNLSG VPENLR FPDSAFHPG
Sbjct: 475 EELTRFHNLISLDLSYNNFEGNIPDGLPDSLKMFTVSANNLSGNVPENLRRFPDSAFHPG 534
Query: 537 NSLLTFPNSPSQQDVPDLTLRGHGNHMKPATKIALIVGLVCGVTMVALLCMLIYFRALWQ 596
N+LL P S +D D+TLR HG HMK + K ALI+GLV G ++AL+C++ +F L +
Sbjct: 535 NALLNVPIS-LPKDKTDITLRKHGYHMKTSVKAALIIGLVVGTALLALVCVMFHF-MLRK 592
Query: 597 RHGRDSFKRDGEQKAF--SEGSSS--LSQRSGVNKKGDPSLSSFTFH---QDPLPSSPME 649
+H + GE+ +E SSS ++ ++ V + S ++ T + P+ SS
Sbjct: 593 QHDEEKSDVTGEKSIVPKTEPSSSNVIAAKNSVQENESSSSTTSTPSIKAKLPVSSSRFS 652
Query: 650 SAYDAGETSSVVTKPKELYHPDSVRKDEGLSS---------PVSLLSSSNPSQSKNSRFT 700
D+ +S + +P E H +S RKDE LSS P S NP+ + S
Sbjct: 653 QYSDSENSSPFLKEPNEELHSES-RKDEILSSQVSSSTPSLPKIQNSPDNPTSRQTSM-- 709
Query: 701 KNSDVLNACSPEKLAGDLHLFDVSLMFTAEELSHAPAEVIGRSCHGTLYKATLDSGSILA 760
+L G+L++FD SL TAEELS APAE IGRSCHGTLY+A L+S S+LA
Sbjct: 710 ------------RLDGNLYIFDSSLKLTAEELSRAPAEAIGRSCHGTLYRAVLNSDSVLA 757
Query: 761 VKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQSLAVY 820
VK LREG AKGKKEFARE+KKLGNI HPNLVSLQ YYWGPKEHEKL+IS Y++A LA Y
Sbjct: 758 VKWLREGTAKGKKEFAREIKKLGNINHPNLVSLQAYYWGPKEHEKLIISRYMDAPCLAFY 817
Query: 821 LQGKG 825
LQ G
Sbjct: 818 LQEAG 822
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 832 | ||||||
| TAIR|locus:2059253 | 1020 | AT2G27060 [Arabidopsis thalian | 0.971 | 0.792 | 0.543 | 3.6e-224 | |
| TAIR|locus:2184058 | 1048 | AT5G10020 [Arabidopsis thalian | 0.919 | 0.729 | 0.319 | 9e-93 | |
| TAIR|locus:2098267 | 836 | IMK2 "inflorescence meristem r | 0.429 | 0.427 | 0.317 | 3.2e-55 | |
| TAIR|locus:2182855 | 967 | ERL2 "ERECTA-like 2" [Arabidop | 0.667 | 0.573 | 0.284 | 3.8e-55 | |
| TAIR|locus:2122239 | 1136 | AT4G36180 [Arabidopsis thalian | 0.604 | 0.442 | 0.299 | 4e-55 | |
| TAIR|locus:2160791 | 1102 | AT5G63930 [Arabidopsis thalian | 0.575 | 0.434 | 0.305 | 6e-55 | |
| TAIR|locus:2167948 | 966 | ERL1 "ERECTA-like 1" [Arabidop | 0.665 | 0.573 | 0.301 | 7.2e-55 | |
| TAIR|locus:2020417 | 1101 | AT1G17230 [Arabidopsis thalian | 0.597 | 0.451 | 0.318 | 3.9e-54 | |
| TAIR|locus:2005507 | 976 | ER "ERECTA" [Arabidopsis thali | 0.673 | 0.573 | 0.302 | 2.6e-53 | |
| UNIPROTKB|P93194 | 1109 | INRPK1 "Receptor-like protein | 0.584 | 0.438 | 0.298 | 1.9e-52 |
| TAIR|locus:2059253 AT2G27060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2164 (766.8 bits), Expect = 3.6e-224, P = 3.6e-224
Identities = 456/839 (54%), Positives = 571/839 (68%)
Query: 1 MQTV-SLIVLL--LVVNALGQSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNW 57
MQ + S+I LL +V+ G SDFEALL+LKKG DPS +++ SWD K+LSSD CP NW
Sbjct: 1 MQIICSMIFLLVMMVMKVSGFSDFEALLELKKGFQGDPSRKVLTSWDAKALSSDRCPLNW 60
Query: 58 FGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEF 117
+G+TC++G VTSI LN GL+G+FSFP I+GL+ML N+S++NNQ G +++IGS+ SL++
Sbjct: 61 YGVTCSSGGVTSIDLNGFGLLGSFSFPVIVGLRMLQNLSIANNQFSGTLSNIGSLTSLKY 120
Query: 118 LDLSHNLFHGLIPSGIVSLKNLMLLNIS-SNSFEGTFPSGFGGLGKLKYLDLRANRFGGD 176
LD+S NLFHG +PSGI +L+NL +N+S +N+ G PSGFG L KLKYLDL+ N F G+
Sbjct: 121 LDVSGNLFHGALPSGIENLRNLEFVNLSGNNNLGGVIPSGFGSLAKLKYLDLQGNSFSGE 180
Query: 177 IMHLLSQLGSVVHVDLSNNQXXXXXXXXXXXXXXXXXXQYLNISENSLVGELFPHDGMPY 236
+M L SQL SV +VD+S N ++LN+S NSLVGELF HDG+P+
Sbjct: 181 VMSLFSQLISVEYVDISRNNFSGSLDLGLAKSSFVSSIRHLNVSGNSLVGELFAHDGIPF 240
Query: 237 FDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVAXXXXXXXXXXXXXXXX 296
FD+LEVFDAS+N L G++P F+FV SL+ILRL NQLS SLP
Sbjct: 241 FDSLEVFDASSNQLSGSVPVFSFVVSLKILRLQDNQLSASLPPGLLQESSTILTDLDLSL 300
Query: 297 NQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYV 356
NQLEGP+GSITS+TL+K+NLSSN+LSGSLP +VGHC I+DLSNN++SG+LSR+QNWG+ V
Sbjct: 301 NQLEGPIGSITSSTLEKLNLSSNRLSGSLPLKVGHCAIIDLSNNKISGELSRIQNWGDSV 360
Query: 357 EDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNG 416
E I LSSN LTG +P QTSQFLRLTS K +NNSL+G LP +LGTYPELK IDLS N L+G
Sbjct: 361 EIIRLSSNSLTGTLPGQTSQFLRLTSLKAANNSLQGVLPFILGTYPELKEIDLSHNQLSG 420
Query: 417 FLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLL 476
+ + F S KLT+LNLS NNFSG LPLQ+ + G NLSLT++ L++NSL G L
Sbjct: 421 VIPSNLFISAKLTELNLSNNNFSGSLPLQDAS---TVG---NLSLTNIGLSHNSLGGVLS 474
Query: 477 PGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFPDSAFHPG 536
+++FHNL+ L+LS N FEG+IPDGLP+ LK F VS NNLSG VPENLR FPDSAFHPG
Sbjct: 475 EELTRFHNLISLDLSYNNFEGNIPDGLPDSLKMFTVSANNLSGNVPENLRRFPDSAFHPG 534
Query: 537 NSLLTFPNSPSQQDVPDLTLRGHGNHMKPATKIALIVGLVCGVTMVALLCMLIYFRALWQ 596
N+LL P S +D D+TLR HG HMK + K ALI+GLV G ++AL+C++ +F L +
Sbjct: 535 NALLNVPIS-LPKDKTDITLRKHGYHMKTSVKAALIIGLVVGTALLALVCVMFHFM-LRK 592
Query: 597 RHGRDSFKRDGEQKAFXXXXXXXXXXXGVNKKGDPSLSSFTFHQDP-----LP-SSPMES 650
+H + GE+ + SS + P LP SS S
Sbjct: 593 QHDEEKSDVTGEKSIVPKTEPSSSNVIAAKNSVQENESSSSTTSTPSIKAKLPVSSSRFS 652
Query: 651 AYDAGETSSVVTK-PKELYHPDSVRKDEGXXXXXXXXXXXXXXXXXXXRFTKNSDVLNAC 709
Y E SS K P E H +S RKDE + + D N
Sbjct: 653 QYSDSENSSPFLKEPNEELHSES-RKDE------ILSSQVSSSTPSLPKIQNSPD--NPT 703
Query: 710 SPE---KLAGDLHLFDVSLMFTAEELSHAPAEVIGRSCHGTLYKATLDSGSILAVKRLRE 766
S + +L G+L++FD SL TAEELS APAE IGRSCHGTLY+A L+S S+LAVK LRE
Sbjct: 704 SRQTSMRLDGNLYIFDSSLKLTAEELSRAPAEAIGRSCHGTLYRAVLNSDSVLAVKWLRE 763
Query: 767 GIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQSLAVYLQGKG 825
G AKGKKEFARE+KKLGNI HPNLVSLQ YYWGPKEHEKL+IS Y++A LA YLQ G
Sbjct: 764 GTAKGKKEFAREIKKLGNINHPNLVSLQAYYWGPKEHEKLIISRYMDAPCLAFYLQEAG 822
|
|
| TAIR|locus:2184058 AT5G10020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
Identities = 261/817 (31%), Positives = 412/817 (50%)
Query: 30 GIAKDP-SGQIID-SWDTKSLSSDGCPRNWFGITCTNGYVTSIMLNDMGLVGN-FS---F 83
GI+ DP +G II + D + LS + G+T L ++ L GN FS
Sbjct: 66 GISCDPETGSIIAINLDRRGLSGELKFSTLSGLT---------RLRNLSLSGNSFSGRVV 116
Query: 84 PTIIGLKMLCNVSVSNNQLMGNITD-IGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLL 142
P++ G+ L ++ +S+N G I I + SL L+LS N F G PSG +L+ L L
Sbjct: 117 PSLGGISSLQHLDLSDNGFYGPIPGRISELWSLNHLNLSSNKFEGGFPSGFRNLQQLRSL 176
Query: 143 NISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDI---MHLLSQLGSVV-HVDLSNNQXX 198
++ N G F L ++++DL NRF G + M +S + + + H++LS+N
Sbjct: 177 DLHKNEIWGDVGEIFTELKNVEFVDLSCNRFNGGLSLPMENISSISNTLRHLNLSHN-AL 235
Query: 199 XXXXXXXXXXXXXXXXQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFN 258
+ +++ N + GEL PH G +L + + N L G +P
Sbjct: 236 NGKFFSEESIGSFKNLEIVDLENNQINGEL-PHFGSQ--PSLRILKLARNELFGLVPQEL 292
Query: 259 FVFSLRILRL--GSNQLSGSLPVAXXXXXXXXXXXXXXXXNQLEGPVGSITSATLKKVNL 316
S+ +L L N +GS+ N L G + S + + ++L
Sbjct: 293 LQSSIPLLELDLSRNGFTGSI----SEINSSTLTMLNLSSNGLSGDLPS-SFKSCSVIDL 347
Query: 317 SSNKLSGSLPA-RVGHCT--IVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQ 373
S N SG + + T ++DLS+N LSG L + + + + + +N ++G +P+
Sbjct: 348 SGNTFSGDVSVVQKWEATPDVLDLSSNNLSGSLPNFTSAFSRLSVLSIRNNSVSGSLPSL 407
Query: 374 --TSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDL 431
SQF + +S+N G +P T+ L+ ++LS N+L G P F ++ ++L
Sbjct: 408 WGDSQF---SVIDLSSNKFSGFIPVSFFTFASLRSLNLSRNNLEG---PIPFRGSRASEL 461
Query: 432 NLSGNNFSGPLPLQEIQNNPSTGSTQN-----LSLTSLDLAYNSLSGRLLPGISKFHNLV 486
L N++ + L ++ N TG + L+LA N LSG L ++K L+
Sbjct: 462 -LVLNSYP-QMELLDLSTNSLTGMLPGDIGTMEKIKVLNLANNKLSGELPSDLNKLSGLL 519
Query: 487 YLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFPDSAFHPGNSLLTFPNSP 546
+L+LSNN F+G IP+ LP+ + FNVS+N+LSG++PE+LR++P S+F+PGNS L+ P
Sbjct: 520 FLDLSNNTFKGQIPNKLPSQMVGFNVSYNDLSGIIPEDLRSYPPSSFYPGNSKLSLPGRI 579
Query: 547 SQQDVPDLTLRGHGNHMKPATKIALIVGLVCGVTMVALLCMLIYFRA-LWQRHGRDSFKR 605
DL+L G +H K + +IA+IV V G ++ L + Y R L HGR+ F
Sbjct: 580 PADSSGDLSLPGKKHHSKLSIRIAIIVASV-GAAIMILFVLFAYHRTQLKDFHGRNRFTD 638
Query: 606 DGEQKAFXXXXXXXXXXXGVNKKGDPSLSSFTFHQDPLPSSPMESAYDA-GETSSVVTKP 664
+ + + SS +F D L ++ S G + + +
Sbjct: 639 QATTRDTKFGRSSRPSLFNFSSNVEQQSSSLSFSNDHLLTANSRSLSGIPGCEAEISEQG 698
Query: 665 KELYHPDSVRKDEGXXXXXXXXXXXXXXXXXXXRFTKNSDVLNACSPEKLAGDLHLFDVS 724
+ D+ RF+ +L+ SP++LAG+L DVS
Sbjct: 699 APATSAPTNLLDDYPAASGRKSSSGGSPLSSSPRFSDQPVMLDVYSPDRLAGELFFLDVS 758
Query: 725 LMFTAEELSHAPAEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGN 784
L TAEELS APAEV+GRS HGTLYKATLD+G +L VK LR G+ + KK+FARE KK+G+
Sbjct: 759 LKLTAEELSRAPAEVLGRSSHGTLYKATLDNGHMLTVKWLRVGLVRHKKDFAREAKKIGS 818
Query: 785 IKHPNLVSLQGYYWGPKEHEKLVISNYINAQSLAVYL 821
+KHPN+V L+ YYWGP+E E+L++S+Y+ +SLA++L
Sbjct: 819 LKHPNIVPLRAYYWGPREQERLLLSDYLRGESLAMHL 855
|
|
| TAIR|locus:2098267 IMK2 "inflorescence meristem receptor-like kinase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 381 (139.2 bits), Expect = 3.2e-55, Sum P(2) = 3.2e-55
Identities = 125/394 (31%), Positives = 190/394 (48%)
Query: 239 NLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVAXXXXXXXXXXXXXXXXN 297
+L NN + G++P S ++ SLR + L +N+LSGS+PV+ N
Sbjct: 119 SLRKLSLHNNVIAGSVPRSLGYLKSLRGVYLFNNRLSGSIPVSLGNCPLLQNLDLSS--N 176
Query: 298 QLEGPVG-SITSAT-LKKVNLSSNKLSGSLPARVGHC---TIVDLSNNRLSGDLSRM-QN 351
QL G + S+T +T L ++NLS N LSG LP V T +DL +N LSG + N
Sbjct: 177 QLTGAIPPSLTESTRLYRLNLSFNSLSGPLPVSVARSYTLTFLDLQHNNLSGSIPDFFVN 236
Query: 352 WGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSL 411
+ ++ ++L N +G VP + L +S+N L G +P G P L+ +D S
Sbjct: 237 GSHPLKTLNLDHNRFSGAVPVSLCKHSLLEEVSISHNQLSGSIPRECGGLPHLQSLDFSY 296
Query: 412 NHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSL 471
N +NG + SF + L LNL N+ GP+P + NL T L+L N +
Sbjct: 297 NSINGTIPDSFSNLSSLVSLNLESNHLKGPIP-------DAIDRLHNL--TELNLKRNKI 347
Query: 472 SGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPN--GLKEFNVSFNNLSGVVPENL-RNF 528
+G + I + L+LS N F G IP L + L FNVS+N LSG VP L + F
Sbjct: 348 NGPIPETIGNISGIKKLDLSENNFTGPIPLSLVHLAKLSSFNVSYNTLSGPVPPVLSKKF 407
Query: 529 PDSAFHPGNSLLTFPNSPSQQDVPD----LTL--------RGHGNHMKPATKIALIVGLV 576
S+F GN L +S + PD LTL R H +H K + K +++ +
Sbjct: 408 NSSSFL-GNIQLCGYSSSNPCPAPDHHHPLTLSPTSSQEPRKH-HHRKLSVKDVILIAIG 465
Query: 577 CGVTMVALLCMLIYFRALWQRHGRDSFKRDGEQK 610
+ ++ LLC ++ + +R ++DG+ K
Sbjct: 466 ALLAILLLLCCILLCCLIKKRAALK--QKDGKDK 497
|
|
| TAIR|locus:2182855 ERL2 "ERECTA-like 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 506 (183.2 bits), Expect = 3.8e-55, Sum P(2) = 3.8e-55
Identities = 176/619 (28%), Positives = 287/619 (46%)
Query: 4 VSLIVLLLV--VNALGQSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGIT 61
+ ++V +L+ V+ + ++ +AL+ +K + + + ++D WD + D C +W G+
Sbjct: 14 LGMVVFMLLGSVSPMN-NEGKALMAIKASFS-NVANMLLD-WDDVH-NHDFC--SWRGVF 67
Query: 62 CTNGY--VTSIMLNDMGLVGNFSFPTIIG-LKMLCNVSVSNNQLMGNITD-IGSIQSLEF 117
C N V S+ L+++ L G S + +G L L ++ + N+L G I D IG+ SL +
Sbjct: 68 CDNVSLNVVSLNLSNLNLGGEIS--SALGDLMNLQSIDLQGNKLGGQIPDEIGNCVSLAY 125
Query: 118 LDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDI 177
+D S NL G IP I LK L LN+ +N G P+ + LK LDL N+ G+I
Sbjct: 126 VDFSTNLLFGDIPFSISKLKQLEFLNLKNNQLTGPIPATLTQIPNLKTLDLARNQLTGEI 185
Query: 178 MHLLSQLGSVVHVDLSNNQXXXXXXXXXXXXXXXXXXQYLNISENSLVGELFPHDGMPYF 237
LL + ++ L N Y ++ N+L G + P + +
Sbjct: 186 PRLLYWNEVLQYLGLRGNMLTGTLSPDMCQLTGLW---YFDVRGNNLTGTI-P-ESIGNC 240
Query: 238 DNLEVFDASNNHLVGAIPSFNFVF-SLRILRLGSNQLSGSLPVAXXXXXXXXXXXXXXXX 296
+ E+ D S N + G IP +N F + L L N+L+G +P
Sbjct: 241 TSFEILDVSYNQITGVIP-YNIGFLQVATLSLQGNKLTGRIPEVIGLMQALAVLDLSD-- 297
Query: 297 NQLEGPVGSITS--ATLKKVNLSSNKLSGSLPARVGHCT---IVDLSNNRLSGDLSRMQN 351
N+L GP+ I + K+ L NKL+G +P +G+ + + L++N L G +
Sbjct: 298 NELTGPIPPILGNLSFTGKLYLHGNKLTGQIPPELGNMSRLSYLQLNDNELVGKIPPELG 357
Query: 352 WGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSL 411
+ +++L++N L G++P+ S L F V N L G +P L ++LS
Sbjct: 358 KLEQLFELNLANNNLVGLIPSNISSCAALNQFNVHGNFLSGAVPLEFRNLGSLTYLNLSS 417
Query: 412 NHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQ----------EIQNNPSTGSTQ---- 457
N G + L L+LSGNNFSG +PL + N G+
Sbjct: 418 NSFKGKIPAELGHIINLDTLDLSGNNFSGSIPLTLGDLEHLLILNLSRNHLNGTLPAEFG 477
Query: 458 NL-SLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPN--GLKEFNVSF 514
NL S+ +D+++N L+G + + + N+ L L+NNK G IPD L N L N+SF
Sbjct: 478 NLRSIQIIDVSFNFLAGVIPTELGQLQNINSLILNNNKIHGKIPDQLTNCFSLANLNISF 537
Query: 515 NNLSGVVPENLRNFPDSAFHP----GNSLLTFPNSPSQQDVPDLTLRGHGNHMKPATKIA 570
NNLSG++P ++NF + F P GN L N P L P +++
Sbjct: 538 NNLSGIIPP-MKNF--TRFSPASFFGNPFLC-GNWVGSICGPSL----------PKSQVF 583
Query: 571 LIVGLVCGVT-MVALLCML 588
V ++C V + L+CM+
Sbjct: 584 TRVAVICMVLGFITLICMI 602
|
|
| TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 497 (180.0 bits), Expect = 4.0e-55, Sum P(2) = 4.0e-55
Identities = 163/545 (29%), Positives = 250/545 (45%)
Query: 4 VSLIVLLLVVNAL-------GQSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRN 56
+SL + LV+ A Q++ +AL K + DP G + SWD S+ P +
Sbjct: 5 ISLFFIFLVIYAPLVSYADESQAEIDALTAFKLNL-HDPLGALT-SWDP---STPAAPCD 59
Query: 57 WFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNI-TDIGSIQSL 115
W G+ CTN VT I L + L G S I GL+ML +S+ +N G I T + L
Sbjct: 60 WRGVGCTNHRVTEIRLPRLQLSGRIS-DRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRL 118
Query: 116 EFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGG 175
+ L +N G +P + +L +L + N++ N G P G L++LD+ +N F G
Sbjct: 119 LSVFLQYNSLSGKLPPAMRNLTSLEVFNVAGNRLSGEIPVGLPS--SLQFLDISSNTFSG 176
Query: 176 DIMHLLSQLGSVVHVDLSNNQXXXXXXXXXXXXXXXXXXQYLNISENSLVGELFPHDGMP 235
I L+ L + ++LS NQ QYL + N L G L P +
Sbjct: 177 QIPSGLANLTQLQLLNLSYNQLTGEIPASLGNLQSL---QYLWLDFNLLQGTL-P-SAIS 231
Query: 236 YFDNLEVFDASNNHLVGAIPS-FNFVFSLRILRLGSNQLSGSLPVAXX-XXXXXXXXXXX 293
+L AS N + G IP+ + + L +L L +N SG++P +
Sbjct: 232 NCSSLVHLSASENEIGGVIPAAYGALPKLEVLSLSNNNFSGTVPFSLFCNTSLTIVQLGF 291
Query: 294 XXXNQLEGPVGSITSAT-LKKVNLSSNKLSGSLP---ARVGHCTIVDLSNNRLSGDLSRM 349
+ + P + T L+ ++L N++SG P + +D+S N SG++
Sbjct: 292 NAFSDIVRPETTANCRTGLQVLDLQENRISGRFPLWLTNILSLKNLDVSGNLFSGEIP-- 349
Query: 350 QNWGNY--VEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVI 407
+ GN +E++ L++N LTG +P + Q L NSL+G +P LG LKV+
Sbjct: 350 PDIGNLKRLEELKLANNSLTGEIPVEIKQCGSLDVLDFEGNSLKGQIPEFLGYMKALKVL 409
Query: 408 DLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLA 467
L N +G++ S +L LNL NN +G P++ + SL+ LDL+
Sbjct: 410 SLGRNSFSGYVPSSMVNLQQLERLNLGENNLNGSFPVELMALT---------SLSELDLS 460
Query: 468 YNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLK--EFNVSFNNLSGVVPENL 525
N SG + IS NL +LNLS N F G IP + N K ++S N+SG VP L
Sbjct: 461 GNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVEL 520
Query: 526 RNFPD 530
P+
Sbjct: 521 SGLPN 525
|
|
| TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 519 (187.8 bits), Expect = 6.0e-55, Sum P(2) = 6.0e-55
Identities = 155/507 (30%), Positives = 255/507 (50%)
Query: 95 VSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTF 153
+++ NQL+G I ++G +QSLEFL L N +G IP I +L + ++ S N+ G
Sbjct: 270 LALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEI 329
Query: 154 PSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQXXXXXXXXXXXXXXXXX 213
P G + L+ L L N+ G I LS L ++ +DLS N
Sbjct: 330 PLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFM 389
Query: 214 XQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFS-LRILRLGSNQ 272
Q + +NSL G + P G ++ +L V D S+NHL G IPS+ + S + IL LG+N
Sbjct: 390 LQ---LFQNSLSGTIPPKLG--WYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNN 444
Query: 273 LSGSLPVAXXXXXXXXXXXXXXXXNQLEG--PVGSITSATLKKVNLSSNKLSGSLPARVG 330
LSG++P N L G P + + L N+ GS+P VG
Sbjct: 445 LSGNIPTGITTCKTLVQLRLAR--NNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVG 502
Query: 331 HCTIVD---LSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSN 387
+C+ + L++N +G+L R + + +++SSN LTG VP++ L +
Sbjct: 503 NCSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCC 562
Query: 388 NSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEI 447
N+ G LP+ +G+ +L+++ LS N+L+G + + ++LT+L + GN F+G +P +E+
Sbjct: 563 NNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIP-REL 621
Query: 448 QNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPN-- 505
GS L + +L+L+YN L+G + P +S L +L L+NN G IP N
Sbjct: 622 ------GSLTGLQI-ALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLS 674
Query: 506 GLKEFNVSFNNLSGVVPENLRNFPDSAFHPGNSLLTFPNSPSQQDVPDLTLRGHGNH--M 563
L +N S+N+L+G +P LRN S+F L P + Q P + G M
Sbjct: 675 SLLGYNFSYNSLTGPIPL-LRNISMSSFIGNEGLCGPPLNQCIQTQPFAPSQSTGKPGGM 733
Query: 564 KPATKIALIVGLVCGVTMVALLCMLIY 590
+ + IA+ ++ GV+++ L+ +++Y
Sbjct: 734 RSSKIIAITAAVIGGVSLM-LIALIVY 759
|
|
| TAIR|locus:2167948 ERL1 "ERECTA-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 502 (181.8 bits), Expect = 7.2e-55, Sum P(2) = 7.2e-55
Identities = 187/621 (30%), Positives = 295/621 (47%)
Query: 12 VVNALGQSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITCTN-GY-VTS 69
V +A+ ++ +AL+ +K G + ++D WD +SD C +W G+ C N Y V S
Sbjct: 22 VASAMN-NEGKALMAIK-GSFSNLVNMLLD-WDDVH-NSDLC--SWRGVFCDNVSYSVVS 75
Query: 70 IMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITD-IGSIQSLEFLDLSHNLFHGL 128
+ L+ + L G S P I L+ L ++ + N+L G I D IG+ SL +LDLS NL +G
Sbjct: 76 LNLSSLNLGGEIS-PAIGDLRNLQSIDLQGNKLAGQIPDEIGNCASLVYLDLSENLLYGD 134
Query: 129 IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLL--SQL-- 184
IP I LK L LN+ +N G P+ + LK LDL N G+I LL +++
Sbjct: 135 IPFSISKLKQLETLNLKNNQLTGPVPATLTQIPNLKRLDLAGNHLTGEISRLLYWNEVLQ 194
Query: 185 -----GSVVHVDLSNN------------QXXXXXXXXXXXXXXXXXXQYLNISENSLVGE 227
G+++ LS++ + Q L+IS N + GE
Sbjct: 195 YLGLRGNMLTGTLSSDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFQILDISYNQITGE 254
Query: 228 LFPHD-GMPYFDNLEVFDASNNHLVGAIPS-FNFVFSLRILRLGSNQLSGSLPVAXXXXX 285
+ P++ G F + N L G IP + +L +L L N+L G P+
Sbjct: 255 I-PYNIG---FLQVATLSLQGNRLTGRIPEVIGLMQALAVLDLSDNELVG--PIPPILGN 308
Query: 286 XXXXXXXXXXXNQLEGPVGSITS--ATLKKVNLSSNKLSGSLPARVGHCTIV---DLSNN 340
N L GP+ S + L + L+ NKL G++P +G + +L+NN
Sbjct: 309 LSFTGKLYLHGNMLTGPIPSELGNMSRLSYLQLNDNKLVGTIPPELGKLEQLFELNLANN 368
Query: 341 RLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGT 400
RL G + + + ++ N L+G +P LT +S+N+ +G +P LG
Sbjct: 369 RLVGPIPSNISSCAALNQFNVHGNLLSGSIPLAFRNLGSLTYLNLSSNNFKGKIPVELGH 428
Query: 401 YPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLS 460
L +DLS N+ +G + + L LNLS N+ SG LP + G+ +++
Sbjct: 429 IINLDKLDLSGNNFSGSIPLTLGDLEHLLILNLSRNHLSGQLPAE-------FGNLRSIQ 481
Query: 461 LTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPN--GLKEFNVSFNNLS 518
+ +D+++N LSG + + + NL L L+NNK G IPD L N L NVSFNNLS
Sbjct: 482 M--IDVSFNLLSGVIPTELGQLQNLNSLILNNNKLHGKIPDQLTNCFTLVNLNVSFNNLS 539
Query: 519 GVVPENLRNFPDSAFHPGNSLLTFPNSPSQQDVPDLTLRGHGNHMKPATKIALIVGLVCG 578
G+VP ++NF S F P + F +P ++ G + ++ ALI +V G
Sbjct: 540 GIVPP-MKNF--SRFAPAS----FVGNPYLCGNWVGSICGPLPKSRVFSRGALIC-IVLG 591
Query: 579 VTMVALLCM--LIYFRALWQR 597
V + LLCM L ++++ Q+
Sbjct: 592 V--ITLLCMIFLAVYKSMQQK 610
|
|
| TAIR|locus:2020417 AT1G17230 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 497 (180.0 bits), Expect = 3.9e-54, Sum P(2) = 3.9e-54
Identities = 173/543 (31%), Positives = 251/543 (46%)
Query: 11 LVVNALGQSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITCTN-GYVTS 69
++V +L + LL+ K D +G + SW+ L S+ C NW GI CT+ VTS
Sbjct: 19 ILVRSLNEEG-RVLLEFK-AFLNDSNGYLA-SWN--QLDSNPC--NWTGIACTHLRTVTS 71
Query: 70 IMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGL 128
+ LN M L G S P I L L ++VS N + G I D+ +SLE LDL N FHG+
Sbjct: 72 VDLNGMNLSGTLS-PLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFHGV 130
Query: 129 IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVV 188
IP + + L L + N G+ P G L L+ L + +N G I +++L +
Sbjct: 131 IPIQLTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLR 190
Query: 189 HVDLSNNQXXXXXXXXXXXXXXXXXXQYLNISENSLVGELFPHDGMPYFDNLEVFDASNN 248
+ N + L ++EN L G L P + NL N
Sbjct: 191 IIRAGRN---GFSGVIPSEISGCESLKVLGLAENLLEGSL-PKQ-LEKLQNLTDLILWQN 245
Query: 249 HLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVAXXXXXXXXXXXXXXXXNQLEG--P--V 303
L G IP S + L +L L N +GS+P NQL G P +
Sbjct: 246 RLSGEIPPSVGNISRLEVLALHENYFTGSIP--REIGKLTKMKRLYLYTNQLTGEIPREI 303
Query: 304 GSITSATLKKVNLSSNKLSGSLPARVGHCT---IVDLSNNRLSGDLSRMQNWGNYVEDIH 360
G++ A +++ S N+L+G +P GH ++ L N L G + R +E +
Sbjct: 304 GNLIDAA--EIDFSENQLTGFIPKEFGHILNLKLLHLFENILLGPIPRELGELTLLEKLD 361
Query: 361 LSSNFLTGMVPNQTSQFLR-LTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLL 419
LS N L G +P Q QFL L ++ +N LEG +P ++G Y V+D+S N L+G +
Sbjct: 362 LSINRLNGTIP-QELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIP 420
Query: 420 PSFFTSTKLTDLNLSGNNFSGPLP--------LQEIQ--NNPSTGSTQ----NL-SLTSL 464
F L L+L N SG +P L ++ +N TGS NL +LT+L
Sbjct: 421 AHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTAL 480
Query: 465 DLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLK--EFNVSFNNLSGVVP 522
+L N LSG + + K NL L L+NN F G IP + N K FN+S N L+G +P
Sbjct: 481 ELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIP 540
Query: 523 ENL 525
+ L
Sbjct: 541 KEL 543
|
|
| TAIR|locus:2005507 ER "ERECTA" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 499 (180.7 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
Identities = 185/611 (30%), Positives = 280/611 (45%)
Query: 6 LIVLLLVVNALGQSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITCTNG 65
L L LV + LL++KK KD + + D W T S SSD C W G++C N
Sbjct: 13 LFCLSLVATVTSEEG-ATLLEIKKSF-KDVNNVLYD-WTT-SPSSDYCV--WRGVSCENV 66
Query: 66 Y--VTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITD-IGSIQSLEFLDLSH 122
V ++ L+D+ L G S P I LK L ++ + N+L G I D IG SL+ LDLS
Sbjct: 67 TFNVVALNLSDLNLDGEIS-PAIGDLKSLLSIDLRGNRLSGQIPDEIGDCSSLQNLDLSF 125
Query: 123 NLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLS 182
N G IP I LK L L + +N G PS + LK LDL N+ G+I L+
Sbjct: 126 NELSGDIPFSISKLKQLEQLILKNNQLIGPIPSTLSQIPNLKILDLAQNKLSGEIPRLIY 185
Query: 183 QLGSVVHVDLSNNQXXXXXXXXXXXXXXXXXXQYLNISENSLVGELFPHDGMPYFDNLEV 242
+ ++ L N Y ++ NSL G + P + + +V
Sbjct: 186 WNEVLQYLGLRGNNLVGNISPDLCQLTGLW---YFDVRNNSLTGSI-P-ETIGNCTAFQV 240
Query: 243 FDASNNHLVGAIPSFNFVF-SLRILRLGSNQLSGSLPVAXXXXXXXXXXXXXXXXNQLEG 301
D S N L G IP F+ F + L L NQLSG +P N L G
Sbjct: 241 LDLSYNQLTGEIP-FDIGFLQVATLSLQGNQLSGKIP--SVIGLMQALAVLDLSGNLLSG 297
Query: 302 PVGSIT-SATL-KKVNLSSNKLSGSLPARVGHCT---IVDLSNNRLSGDLSRMQNWGNYV 356
+ I + T +K+ L SNKL+GS+P +G+ + ++L++N L+G + +
Sbjct: 298 SIPPILGNLTFTEKLYLHSNKLTGSIPPELGNMSKLHYLELNDNHLTGHIPPELGKLTDL 357
Query: 357 EDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNG 416
D+++++N L G +P+ S L S V N G +P + ++LS N++ G
Sbjct: 358 FDLNVANNDLEGPIPDHLSSCTNLNSLNVHGNKFSGTIPRAFQKLESMTYLNLSSNNIKG 417
Query: 417 FLLPSFFTSTKLTDLNLSGNNFSGPLP--LQEIQN--------NPSTGSTQ----NL-SL 461
+ L L+LS N +G +P L ++++ N TG NL S+
Sbjct: 418 PIPVELSRIGNLDTLDLSNNKINGIIPSSLGDLEHLLKMNLSRNHITGVVPGDFGNLRSI 477
Query: 462 TSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPN--GLKEFNVSFNNLSG 519
+DL+ N +SG + +++ N++ L L NN G++ L N L NVS NNL G
Sbjct: 478 MEIDLSNNDISGPIPEELNQLQNIILLRLENNNLTGNV-GSLANCLSLTVLNVSHNNLVG 536
Query: 520 VVPENLRNFPDSAFHPGNSLLTFPN-SPSQQDVPDLTLRGHGNHMKPATKIALIVGLVCG 578
+P+N NF S F P +S + P S + P R ++ + A I+G+ G
Sbjct: 537 DIPKN-NNF--SRFSP-DSFIGNPGLCGSWLNSPCHDSR---RTVRVSISRAAILGIAIG 589
Query: 579 VTMVALLCMLI 589
+V LL +LI
Sbjct: 590 -GLVILLMVLI 599
|
|
| UNIPROTKB|P93194 INRPK1 "Receptor-like protein kinase" [Ipomoea nil (taxid:35883)] | Back alignment and assigned GO terms |
|---|
Score = 473 (171.6 bits), Expect = 1.9e-52, Sum P(2) = 1.9e-52
Identities = 155/519 (29%), Positives = 238/519 (45%)
Query: 19 SDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITCTNG-YVTSIMLNDMGL 77
SD ALL L + PS I SW+ +SD P +W G+ C +V ++ L+ G+
Sbjct: 26 SDGAALLSLTRHWTSIPS-DITQSWN----ASDSTPCSWLGVECDRRQFVDTLNLSSYGI 80
Query: 78 VGNFSFPTIIGLKMLCNVSVSNNQLMGNI-TDIGSIQSLEFLDLSHNLFHGLIPSGIVSL 136
G F P I LK L V +S N G+I + +G+ LE +DLS N F G IP + +L
Sbjct: 81 SGEFG-PEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNIPDTLGAL 139
Query: 137 KNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQ 196
+NL L++ NS G FP + L+ + N G I + + + + L +NQ
Sbjct: 140 QNLRNLSLFFNSLIGPFPESLLSIPHLETVYFTGNGLNGSIPSNIGNMSELTTLWLDDNQ 199
Query: 197 XXXXXXXXXXXXXXXXXXQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPS 256
Q L +++N+LVG L P + +NL D NN LVGAIP
Sbjct: 200 FSGPVPSSLGNITTL---QELYLNDNNLVGTL-PVT-LNNLENLVYLDVRNNSLVGAIP- 253
Query: 257 FNFVFSLRI--LRLGSNQLSGSLPVAXXXXXXXXXXXXXXXXNQLEGPVGSITSATLK-- 312
+FV +I + L +NQ +G LP L GP+ S K
Sbjct: 254 LDFVSCKQIDTISLSNNQFTGGLPPGLGNCTSLREFGAFSCA--LSGPIPSCFGQLTKLD 311
Query: 313 KVNLSSNKLSGSLPARVGHC-TIVDLS--NNRLSGDLSRMQNWGNYVEDIHLSSNFLTGM 369
+ L+ N SG +P +G C +++DL N+L G++ + ++ +HL +N L+G
Sbjct: 312 TLYLAGNHFSGRIPPELGKCKSMIDLQLQQNQLEGEIPGELGMLSQLQYLHLYTNNLSGE 371
Query: 370 VPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLT 429
VP + L S ++ N+L G+LP + +L + L NH G + ++ L
Sbjct: 372 VPLSIWKIQSLQSLQLYQNNLSGELPVDMTELKQLVSLALYENHFTGVIPQDLGANSSLE 431
Query: 430 DLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLN 489
L+L+ N F+G +P P+ S + L L L YN L G + + L L
Sbjct: 432 VLDLTRNMFTGHIP-------PNLCSQKKLK--RLLLGYNYLEGSVPSDLGGCSTLERLI 482
Query: 490 LSNNKFEGSIPDGLPN-GLKEFNVSFNNLSGVVPENLRN 527
L N G +PD + L F++S NN +G +P +L N
Sbjct: 483 LEENNLRGGLPDFVEKQNLLFFDLSGNNFTGPIPPSLGN 521
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00017368001 | SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (1020 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 832 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 8e-52 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-35 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 8e-17 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 9e-13 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-12 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 3e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-09 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 1e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-07 | |
| smart00221 | 258 | smart00221, STYKc, Protein kinase; unclassified sp | 7e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-06 | |
| smart00219 | 257 | smart00219, TyrKc, Tyrosine kinase, catalytic doma | 1e-06 | |
| cd00180 | 215 | cd00180, PKc, Catalytic domain of Protein Kinases | 1e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-06 | |
| cd06626 | 264 | cd06626, STKc_MEKK4, Catalytic domain of the Prote | 2e-06 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 3e-06 | |
| pfam08263 | 42 | pfam08263, LRRNT_2, Leucine rich repeat N-terminal | 8e-06 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 8e-06 | |
| cd05041 | 251 | cd05041, PTKc_Fes_like, Catalytic domain of Fes-li | 2e-05 | |
| cd06606 | 260 | cd06606, STKc_MAPKKK, Catalytic domain of the Prot | 3e-05 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 5e-05 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 5e-05 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 5e-05 | |
| cd05049 | 280 | cd05049, PTKc_Trk, Catalytic domain of the Protein | 5e-05 | |
| smart00220 | 254 | smart00220, S_TKc, Serine/Threonine protein kinase | 6e-05 | |
| cd05038 | 284 | cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai | 6e-05 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 8e-05 | |
| pfam07714 | 258 | pfam07714, Pkinase_Tyr, Protein tyrosine kinase | 2e-04 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-04 | |
| cd06632 | 258 | cd06632, STKc_MEKK1_plant, Catalytic domain of the | 3e-04 | |
| cd00192 | 262 | cd00192, PTKc, Catalytic domain of Protein Tyrosin | 3e-04 | |
| cd07847 | 286 | cd07847, STKc_CDKL1_4, Catalytic domain of the Ser | 6e-04 | |
| cd07839 | 284 | cd07839, STKc_CDK5, Catalytic domain of the Serine | 9e-04 | |
| cd05122 | 253 | cd05122, PKc_STE, Catalytic domain of STE family P | 0.001 | |
| cd06627 | 254 | cd06627, STKc_Cdc7_like, Catalytic domain of Cell | 0.001 | |
| cd07832 | 286 | cd07832, STKc_CCRK, Catalytic domain of the Serine | 0.001 | |
| cd07838 | 287 | cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc | 0.001 | |
| cd05081 | 284 | cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) | 0.002 | |
| cd07829 | 282 | cd07829, STKc_CDK_like, Catalytic domain of Cyclin | 0.004 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 195 bits (497), Expect = 8e-52
Identities = 175/537 (32%), Positives = 259/537 (48%), Gaps = 40/537 (7%)
Query: 1 MQTVSLIVLLLVVNALGQSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGI 60
L L L + L + E LL K I DP + + +W++ S+D C W GI
Sbjct: 11 YLIFMLFFLFLNFSMLHAEELELLLSFKSSI-NDPL-KYLSNWNS---SADVC--LWQGI 63
Query: 61 TCTN-GYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITD--IGSIQSLEF 117
TC N V SI L+ + G S I L + +++SNNQL G I D + SL +
Sbjct: 64 TCNNSSRVVSIDLSGKNISGKIS-SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRY 122
Query: 118 LDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDI 177
L+LS+N F G IP G S+ NL L++S+N G P+ G LK LDL N G I
Sbjct: 123 LNLSNNNFTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI 180
Query: 178 MHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYF 237
+ L+ L S+ + L++NQ G + LG + S++++ + N+L GE+ G
Sbjct: 181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQ---MKSLKWIYLGYNNLSGEIPYEIGG--L 235
Query: 238 DNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSL 296
+L D N+L G IP S + +L+ L L N+LSG +P ++ S L LDLS
Sbjct: 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF--SLQKLISLDLSD 293
Query: 297 NQLEG--PVGSITSATLKKVNLSSNKLSGSLPARVG---HCTIVDLSNNRLSGDLSRMQN 351
N L G P I L+ ++L SN +G +P + ++ L +N+ SG++ +
Sbjct: 294 NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353
Query: 352 WGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSL 411
N + + LS+N LTG +P L + +NSLEG++P LG L+ + L
Sbjct: 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413
Query: 412 NHLNGFLLPSFFTSTKLTD-LNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNS 470
N +G LPS FT L L++S NN G ++ SL L LA N
Sbjct: 414 NSFSG-ELPSEFTKLPLVYFLDISNNNLQG---------RINSRKWDMPSLQMLSLARNK 463
Query: 471 LSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPN--GLKEFNVSFNNLSGVVPENL 525
G LP L L+LS N+F G++P L + L + +S N LSG +P+ L
Sbjct: 464 FFGG-LPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL 519
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 3e-35
Identities = 123/369 (33%), Positives = 189/369 (51%), Gaps = 18/369 (4%)
Query: 84 PTIIG-LKMLCNVSVSNNQLMGNI-TDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLML 141
P IG L L ++ + N L G I + +G++++L++L L N G IP I SL+ L+
Sbjct: 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS 288
Query: 142 LNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSL 201
L++S NS G P L L+ L L +N F G I L+ L + + L +N+FSG +
Sbjct: 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348
Query: 202 DLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFV 260
LG + ++ L++S N+L GE+ +G+ NL +N L G IP S
Sbjct: 349 PKNLGKHN---NLTVLDLSTNNLTGEI--PEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403
Query: 261 FSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSIT--SATLKKVNLSS 318
SLR +RL N SG LP + ++ LD+S N L+G + S +L+ ++L+
Sbjct: 404 RSLRRVRLQDNSFSGELPSEFTKLP--LVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461
Query: 319 NKLSGSLPARVGHCTI--VDLSNNRLSGDLSRMQNWGNYVE--DIHLSSNFLTGMVPNQT 374
NK G LP G + +DLS N+ SG + R G+ E + LS N L+G +P++
Sbjct: 462 NKFFGGLPDSFGSKRLENLDLSRNQFSGAVPR--KLGSLSELMQLKLSENKLSGEIPDEL 519
Query: 375 SQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLS 434
S +L S +S+N L G +PA P L +DLS N L+G + + L +N+S
Sbjct: 520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579
Query: 435 GNNFSGPLP 443
N+ G LP
Sbjct: 580 HNHLHGSLP 588
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 8e-17
Identities = 57/161 (35%), Positives = 84/161 (52%), Gaps = 7/161 (4%)
Query: 97 VSNNQLMGNITDIG-SIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPS 155
+SNN L G I + SL+ L L+ N F G +P S K L L++S N F G P
Sbjct: 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPR 493
Query: 156 GFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQ 215
G L +L L L N+ G+I LS +V +DLS+NQ SG + + +S
Sbjct: 494 KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQ-- 551
Query: 216 YLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPS 256
L++S+N L GE+ + G ++L + S+NHL G++PS
Sbjct: 552 -LDLSQNQLSGEIPKNLGN--VESLVQVNISHNHLHGSLPS 589
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 9e-13
Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 10/137 (7%)
Query: 25 LQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFP 84
L L+ G DP W D WF + + L++ GL G F
Sbjct: 386 LPLRFGWNGDPCVPQQHPWSGADCQFDSTKGKWF--------IDGLGLDNQGLRG-FIPN 436
Query: 85 TIIGLKMLCNVSVSNNQLMGNI-TDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLN 143
I L+ L ++++S N + GNI +GSI SLE LDLS+N F+G IP + L +L +LN
Sbjct: 437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496
Query: 144 ISSNSFEGTFPSGFGGL 160
++ NS G P+ GG
Sbjct: 497 LNGNSLSGRVPAALGGR 513
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 4e-12
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 351 NWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLS 410
W +++ + L + L G +PN S+ L S +S NS+ G++P LG+ L+V+DLS
Sbjct: 417 KW--FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLS 474
Query: 411 LNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLP 443
N NG + S T L LNL+GN+ SG +P
Sbjct: 475 YNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 3e-09
Identities = 63/226 (27%), Positives = 94/226 (41%), Gaps = 15/226 (6%)
Query: 332 CTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLE 391
+DL+ NRL ++S + + + L +N +T + P L +S+N +E
Sbjct: 95 LPSLDLNLNRLRSNISELLEL-TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE 153
Query: 392 GDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNP 451
LP+ L P LK +DLS N L+ L + L +L+LSGN S L
Sbjct: 154 -SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS---DLPPEIELL 208
Query: 452 STGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSI-PDGLPNGLKEF 510
S +L LDL+ NS+ LL +S NL L LSNNK E G + L+
Sbjct: 209 S-------ALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETL 260
Query: 511 NVSFNNLSGVVPENLRNFPDSAFHPGNSLLTFPNSPSQQDVPDLTL 556
++S N +S + GNSL + + L
Sbjct: 261 DLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELL 306
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 4e-09
Identities = 55/195 (28%), Positives = 78/195 (40%), Gaps = 46/195 (23%)
Query: 406 VID-LSLNH--LNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLT 462
ID L L++ L GF+ L +NLSGN+ G +P PS GS SL
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP-------PSLGSIT--SLE 469
Query: 463 SLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVP 522
LDL+YNS +G + + + +L LNL+ N G +P L G SFN
Sbjct: 470 VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL-GGRLLHRASFN------- 521
Query: 523 ENLRNFPDSAFHPGNSLLTFPNSPSQQDVPDLTLRGHGNHMKPATKIALIVGLVCGVTMV 582
F ++ +P LR G H+ KI + G+ V
Sbjct: 522 -------------------FTDNAGLCGIPG--LRACGPHLSVGAKIGIAFGV-----SV 555
Query: 583 ALLCMLIYFRALWQR 597
A L ++I W+R
Sbjct: 556 AFLFLVICAMCWWKR 570
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 5e-09
Identities = 33/89 (37%), Positives = 46/89 (51%)
Query: 118 LDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDI 177
L L + G IP+ I L++L +N+S NS G P G + L+ LDL N F G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 178 MHLLSQLGSVVHVDLSNNQFSGSLDLGLG 206
L QL S+ ++L+ N SG + LG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 1e-07
Identities = 83/298 (27%), Positives = 135/298 (45%), Gaps = 15/298 (5%)
Query: 200 SLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNF 259
S + L S +S + L++ S + L + + L D + N L I
Sbjct: 55 SSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLE 114
Query: 260 VFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSAT-LKKVNLSS 318
+ +L L L +N ++ P+ L +S+ L ELDLS N++E + + LK ++LS
Sbjct: 115 LTNLTSLDLDNNNITDIPPLIGLLKSN--LKELDLSDNKIESLPSPLRNLPNLKNLDLSF 172
Query: 319 NKLSGSLPARVGHCTI---VDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTS 375
N LS LP + + + +DLS N++S DL + +E++ LS+N + + + S
Sbjct: 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLS 229
Query: 376 QFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSG 435
L+ ++SNN LE DLP +G L+ +DLS N + S + T L +L+LSG
Sbjct: 230 NLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNN--QISSISSLGSLTNLRELDLSG 286
Query: 436 NNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNN 493
N+ S LPL + NL LT L S +L + N +
Sbjct: 287 NSLSNALPLIALLLLLLE-LLLNLLLTLKALELKLNS--ILLNNNILSNGETSSPEAL 341
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 95 VSVSNNQLMGNI-TDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTF 153
+ + N L G I DI ++ L+ ++LS N G IP + S+ +L +L++S NSF G+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 154 PSGFGGLGKLKYLDLRANRFGGDI 177
P G L L+ L+L N G +
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRV 506
|
Length = 623 |
| >gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 7e-07
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 738 EVIGRSCHGTLYKATLDSGSIL-----AVKRLREG-IAKGKKEFAREVKKLGNIKHPNLV 791
+ +G G +YK TL AVK L+E + +EF RE + + + HPN+V
Sbjct: 5 KKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNIV 64
Query: 792 SLQG 795
L G
Sbjct: 65 KLLG 68
|
Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-06
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 31/132 (23%)
Query: 214 IQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQ 272
I L + L G P+D + +L+ + S N + G IP S + SL +L L N
Sbjct: 420 IDGLGLDNQGLRG-FIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477
Query: 273 LSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVG-- 330
+GS+P +L G +TS L+ +NL+ N LSG +PA +G
Sbjct: 478 FNGSIPESL----------------------GQLTS--LRILNLNGNSLSGRVPAALGGR 513
Query: 331 --HCTIVDLSNN 340
H + ++N
Sbjct: 514 LLHRASFNFTDN 525
|
Length = 623 |
| >gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 1e-06
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 738 EVIGRSCHGTLYKATLDSGSIL-----AVKRLREG-IAKGKKEFAREVKKLGNIKHPNLV 791
+ +G G +YK L AVK L+E + +EF RE + + + HPN+V
Sbjct: 5 KKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNVV 64
Query: 792 SLQG 795
L G
Sbjct: 65 KLLG 68
|
Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257 |
| >gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 740 IGRSCHGTLYKAT-LDSGSILAVKRLR-EGIAKGKKEFAREVKKLGNIKHPNLVSLQGYY 797
+G GT+Y A +G +A+K ++ E + +E RE++ L + HPN+V L G +
Sbjct: 1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVF 60
Query: 798 WGPKEHEKLVISNYINAQSLAVYLQGKGLVLW 829
++ Y SL L+ L
Sbjct: 61 EDENHL--YLVMEYCEGGSLKDLLKENEGKLS 90
|
Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 190 VDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNH 249
+ L N G + D S + +Q +N+S NS+ G + P G +LEV D S N
Sbjct: 423 LGLDNQGLRGFIP---NDISKLRHLQSINLSGNSIRGNIPPSLGS--ITSLEVLDLSYNS 477
Query: 250 LVGAIP-SFNFVFSLRILRLGSNQLSGSLPVAL 281
G+IP S + SLRIL L N LSG +P AL
Sbjct: 478 FNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4 | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 740 IGRSCHGTLYKA-TLDSGSILAVK--RLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGY 796
IG G +Y A LD+G ++AVK R+++ K KE A E+K L +KHPNLV
Sbjct: 8 IGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVK---- 63
Query: 797 YWGPKEH-EKLVI-SNYINAQSLAVYLQGKGL 826
Y+G + H EK+ I Y + +L L+ +
Sbjct: 64 YYGVEVHREKVYIFMEYCSGGTLEELLEHGRI 95
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 3e-06
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRF 173
+L+ LDLS+N + L NL +L++S N+ P F GL L+ LDL N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 8e-06
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 19 SDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITCT 63
D +ALL K + DPSG + SW+ S P +W G+TC
Sbjct: 3 DDRDALLAFKSSLNGDPSG-ALSSWN----PSSSDPCSWTGVTCD 42
|
Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 8e-06
Identities = 59/264 (22%), Positives = 86/264 (32%), Gaps = 77/264 (29%)
Query: 113 QSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANR 172
SL+ L LS N G IP G+ SL G L+ LDL N
Sbjct: 51 PSLKELCLSLN-ETGRIPRGLQSL-----------------LQGLTKGCGLQELDLSDNA 92
Query: 173 FGGDIMHL---LSQLGSVVHVDLSNNQFSG------------------SLDLG------- 204
G D + L + S+ + L+NN L LG
Sbjct: 93 LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA 152
Query: 205 -----LGDSSFISSIQYLNISENSLVGELFPH--DGMPYFDNLEVFDASNN--------H 249
++ LN++ N + +G+ NLEV D +NN
Sbjct: 153 SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASA 212
Query: 250 LVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLS----ELDLSLNQLEGPVGS 305
L + S SL +L LG N L A L + + + L LS N + G+
Sbjct: 213 LAETLASLK---SLEVLNLGDNNL-TDAGAAALASALLSPNISLLTLSLSCNDI-TDDGA 267
Query: 306 IT-------SATLKKVNLSSNKLS 322
+L +++L NK
Sbjct: 268 KDLAEVLAEKESLLELDLRGNKFG 291
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGY 796
E IG+ G +YK L + +AVK R + K++F +E + L HPN+V L G
Sbjct: 1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGV 60
Query: 797 YWGPKEHEKLVISNYINAQSLAVYLQGKG 825
++ ++ + SL +L+ K
Sbjct: 61 CV--QKQPIYIVMELVPGGSLLTFLRKKK 87
|
Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251 |
| >gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGK--KEFAREVKKLGNIKHPNLVSLQ 794
E++GR G++Y A D+G ++AVK + + + RE++ L +++HPN+V
Sbjct: 6 ELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYY 65
Query: 795 GYYWGPKEHEKLVISNYINAQSLAVYLQGKG 825
G +++ + Y++ SL+ L+ G
Sbjct: 66 GSERDEEKNTLNIFLEYVSGGSLSSLLKKFG 96
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 5e-05
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 36 SGQIIDSWDTKSLSSDGCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTI----IGLKM 91
G + DS+ +K L + RN F + L + L N I K
Sbjct: 465 FGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKK 524
Query: 92 LCNVSVSNNQLMGNITD-IGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFE 150
L ++ +S+NQL G I + L LDLS N G IP + ++++L+ +NIS N
Sbjct: 525 LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584
Query: 151 GTFPS 155
G+ PS
Sbjct: 585 GSLPS 589
|
Length = 968 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 5e-05
Identities = 66/271 (24%), Positives = 113/271 (41%), Gaps = 48/271 (17%)
Query: 63 TNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSH 122
+ ++ ++ + N + ++ ++ N+L NI+++ + +L LDL +
Sbjct: 71 SLDLLSPSGISSLDGSENLLNLLPLP-----SLDLNLNRLRSNISELLELTNLTSLDLDN 125
Query: 123 NLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHL-- 180
N + P + NL L++S N E + PS L LK LDL N D+ L
Sbjct: 126 NNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN----DLSDLPK 180
Query: 181 -LSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDN 239
LS L ++ ++DLS N+ S I+ L+
Sbjct: 181 LLSNLSNLNNLDLSGNKI----------SDLPPEIELLS--------------------A 210
Query: 240 LEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSL-PVALLQESSMMLSELDLSLNQ 298
LE D SNN ++ + S + + +L L L +N+L + L L LDLS NQ
Sbjct: 211 LEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSN----LETLDLSNNQ 266
Query: 299 LEGPVGSITSATLKKVNLSSNKLSGSLPARV 329
+ + L++++LS N LS +LP
Sbjct: 267 ISSISSLGSLTNLRELDLSGNSLSNALPLIA 297
|
Length = 394 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 5e-05
Identities = 21/60 (35%), Positives = 26/60 (43%)
Query: 138 NLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQF 197
NL L++S+N F GL LK LDL N S L S+ +DLS N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-05
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 738 EVIGRSCHGTLYKATL------DSGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNL 790
+G G ++ + ++AVK L+E +K+F RE + L N +H N+
Sbjct: 11 RELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENI 70
Query: 791 VSLQG 795
V G
Sbjct: 71 VKFYG 75
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280 |
| >gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 6e-05
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLR-EGIAKGKKEFAREVKKLGNIKHPNLVSLQG 795
E +G G +Y A +G ++A+K ++ + I K ++ RE+K L +KHPN+V L
Sbjct: 5 EKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIVRLYD 64
Query: 796 YY 797
+
Sbjct: 65 VF 66
|
Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254 |
| >gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 6e-05
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 740 IGRSCHGTLYKATLD-----SGSILAVKRLR-EGIAKGKKEFAREVKKLGNIKHPNLVSL 793
+G G + D +G +AVK L G + + +F RE++ L + H N+V
Sbjct: 12 LGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKY 71
Query: 794 QGYYWGPKEHEKLVISNYINAQSLAVYLQG 823
+G P +I Y+ + SL YLQ
Sbjct: 72 KGVCEKPGGRSLRLIMEYLPSGSLRDYLQR 101
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 8e-05
Identities = 48/238 (20%), Positives = 77/238 (32%), Gaps = 57/238 (23%)
Query: 289 LSELDLSLNQLEGPV--------GSITSATLKKVNLSSNKLSGSLPARVGHCT------I 334
L EL LSLN+ G L++++LS N L +
Sbjct: 53 LKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQE 112
Query: 335 VDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEG-- 392
+ L+NN L R+ G+ L + N LEG
Sbjct: 113 LKLNNNGLGDRGLRL---------------LAKGLKDLP----PALEKLVLGRNRLEGAS 153
Query: 393 --DLPAVLGTYPELKVIDLSLNHLNGF----LLPSFFTSTKLTDLNLSGNNFSGPLPLQE 446
L L +LK ++L+ N + L + L L+L+ NN
Sbjct: 154 CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLN-NNGLTDEGASA 212
Query: 447 IQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHN--------LVYLNLSNNKFE 496
+ ++ SL L+L N+L+ G + + L+ L+LS N
Sbjct: 213 LAETLAS----LKSLEVLNLGDNNLTDA---GAAALASALLSPNISLLTLSLSCNDIT 263
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-04
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 738 EVIGRSCHGTLYKATL----DSGSIL-AVKRLREG-IAKGKKEFAREVKKLGNIKHPNLV 791
+ +G G +YK TL + AVK L+EG + ++EF E + + HPN+V
Sbjct: 5 KKLGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPNIV 64
Query: 792 SLQG 795
L G
Sbjct: 65 RLLG 68
|
Length = 258 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 314 VNLSSNKLSGSLP---ARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMV 370
+ L + L G +P +++ H ++LS N + G++ +E + LS N G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 371 PNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYP 402
P Q L ++ NSL G +PA LG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514
|
Length = 623 |
| >gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 738 EVIGRSCHGTLYKA-TLDSGSILAVKRLREGIAKGK-----KEFAREVKKLGNIKHPNLV 791
E++G G++Y+ LD G AVK + K+ +E+ L ++HPN+V
Sbjct: 6 ELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIV 65
Query: 792 SLQGYYWGPKEHEKLVIS-NYINAQSLAVYLQ 822
Y +E + L I + SLA L+
Sbjct: 66 Q---YLGTEREEDNLYIFLELVPGGSLAKLLK 94
|
Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258 |
| >gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 738 EVIGRSCHGTLYKATLDSGS----ILAVKRLREGIAKG-KKEFAREVKKLGNIKHPNLVS 792
+ +G G +YK L +AVK L+E ++ +K+F +E + + + HPN+V
Sbjct: 1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVR 60
Query: 793 LQGYYWGPKEHEKLVISNYINAQSLAVYLQ 822
L G +E ++ Y+ L YL+
Sbjct: 61 LLGVC--TEEEPLYLVLEYMEGGDLLDYLR 88
|
Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262 |
| >gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4 | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 6e-04
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 9/60 (15%)
Query: 740 IGRSCHGTLYKA-TLDSGSILAVKRLREG-----IAKGKKEFAREVKKLGNIKHPNLVSL 793
IG +G ++K ++G I+A+K+ E I KK RE++ L +KHPNLV+L
Sbjct: 9 IGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVI---KKIALREIRMLKQLKHPNLVNL 65
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286 |
| >gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5 | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 9e-04
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 738 EVIGRSCHGTLYKA-TLDSGSILAVKRLR-EGIAKGKKEFA-REVKKLGNIKHPNLVSL 793
E IG +GT++KA ++ I+A+KR+R + +G A RE+ L +KH N+V L
Sbjct: 6 EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRL 64
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284 |
| >gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGY 796
E IG+ G +YKA +G +A+K ++ + K++ E++ L KHPN+V G
Sbjct: 6 EKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGS 65
Query: 797 YWGPKEHEKLVISNYINAQSLAVYLQGKGLVL 828
Y K+ E ++ + + SL L+ L
Sbjct: 66 YL--KKDELWIVMEFCSGGSLKDLLKSTNQTL 95
|
Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253 |
| >gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 738 EVIGRSCHGTLYKA-TLDSGSILAVKRLR-EGIAKGK-KEFAREVKKLGNIKHPNLVSLQ 794
++IGR G +YK L++G +A+K++ E I + K +E+ L N+KHPN+V
Sbjct: 6 DLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYI 65
Query: 795 GYYWGPKEHEKL-VISNYINAQSLA 818
G + + L +I Y SL
Sbjct: 66 GSI---ETSDSLYIILEYAENGSLR 87
|
Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254 |
| >gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 740 IGRSCHGTLYKAT-LDSGSILAVK-----RLREGIAKGKKEFAREVKKLGNIKHPNLVSL 793
IG HG ++KA ++G +A+K RL GI + RE+K L +HP +V L
Sbjct: 8 IGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPN---QALREIKALQACQHPYVVKL 64
|
Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286 |
| >gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 21/105 (20%)
Query: 730 EELSHAPAEVIGRSCHGTLYKAT-LDSGSILAVKRLR-----EGIAKGKKEFAREV---K 780
EEL+ IG +GT+YKA L++G +A+K++R EGI RE+ K
Sbjct: 2 EELAE-----IGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLST---LREIALLK 53
Query: 781 KLGNIKHPNLVSLQGYYWGPKEHEKLVIS---NYINAQSLAVYLQ 822
+L + +HPN+V L GP+ +L ++ +++ Q LA YL
Sbjct: 54 QLESFEHPNIVRLLDVCHGPRTDRELKLTLVFEHVD-QDLATYLS 97
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287 |
| >gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 20/69 (28%), Positives = 40/69 (57%)
Query: 754 DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813
++G ++AVK+L+ A+ ++F RE++ L +++H N+V +G + ++ Y+
Sbjct: 31 NTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLRLVMEYLP 90
Query: 814 AQSLAVYLQ 822
SL YLQ
Sbjct: 91 YGSLRDYLQ 99
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284 |
| >gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.004
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNLV 791
E +G +G +YKA +G I+A+K++R EGI RE+ L +KHPN+V
Sbjct: 5 EKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGI---PSTALREISLLKELKHPNIV 61
Query: 792 SLQ 794
L
Sbjct: 62 KLL 64
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 832 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.97 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.97 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.96 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.95 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.89 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.88 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.88 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.88 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.88 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.87 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.82 | |
| KOG1187 | 361 | consensus Serine/threonine protein kinase [Signal | 99.79 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.77 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.68 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.68 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.67 | |
| KOG0595 | 429 | consensus Serine/threonine-protein kinase involved | 99.59 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.58 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.55 | |
| KOG1094 | 807 | consensus Discoidin domain receptor DDR1 [Signal t | 99.53 | |
| KOG0192 | 362 | consensus Tyrosine kinase specific for activated ( | 99.47 | |
| KOG1026 | 774 | consensus Nerve growth factor receptor TRKA and re | 99.41 | |
| KOG0196 | 996 | consensus Tyrosine kinase, EPH (ephrin) receptor f | 99.39 | |
| KOG0581 | 364 | consensus Mitogen-activated protein kinase kinase | 99.37 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.35 | |
| KOG0197 | 468 | consensus Tyrosine kinases [Signal transduction me | 99.35 | |
| KOG0194 | 474 | consensus Protein tyrosine kinase [Signal transduc | 99.35 | |
| KOG0575 | 592 | consensus Polo-like serine/threonine protein kinas | 99.35 | |
| KOG0580 | 281 | consensus Serine/threonine protein kinase [Cell cy | 99.33 | |
| KOG0615 | 475 | consensus Serine/threonine protein kinase Chk2 and | 99.33 | |
| PHA02988 | 283 | hypothetical protein; Provisional | 99.29 | |
| KOG4278 | 1157 | consensus Protein tyrosine kinase [Signal transduc | 99.21 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.2 | |
| KOG0600 | 560 | consensus Cdc2-related protein kinase [Cell cycle | 99.2 | |
| KOG1095 | 1025 | consensus Protein tyrosine kinase [Signal transduc | 99.19 | |
| KOG0598 | 357 | consensus Ribosomal protein S6 kinase and related | 99.19 | |
| KOG0597 | 808 | consensus Serine-threonine protein kinase FUSED [G | 99.18 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.17 | |
| KOG0605 | 550 | consensus NDR and related serine/threonine kinases | 99.17 | |
| KOG0611 | 668 | consensus Predicted serine/threonine protein kinas | 99.17 | |
| PF07714 | 259 | Pkinase_Tyr: Protein tyrosine kinase Protein kinas | 99.16 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.14 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.13 | |
| KOG3653 | 534 | consensus Transforming growth factor beta/activin | 99.13 | |
| cd05064 | 266 | PTKc_EphR_A10 Catalytic domain of the Protein Tyro | 99.13 | |
| KOG2052 | 513 | consensus Activin A type IB receptor, serine/threo | 99.12 | |
| KOG1025 | 1177 | consensus Epidermal growth factor receptor EGFR an | 99.11 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.11 | |
| cd05105 | 400 | PTKc_PDGFR_alpha Catalytic domain of the Protein T | 99.11 | |
| cd05626 | 381 | STKc_LATS2 Catalytic domain of the Protein Serine/ | 99.1 | |
| cd05595 | 323 | STKc_PKB_beta Catalytic domain of the Protein Seri | 99.09 | |
| KOG0659 | 318 | consensus Cdk activating kinase (CAK)/RNA polymera | 99.09 | |
| cd05571 | 323 | STKc_PKB Catalytic domain of the Protein Serine/Th | 99.09 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.08 | |
| cd05076 | 274 | PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th | 99.08 | |
| cd05104 | 375 | PTKc_Kit Catalytic domain of the Protein Tyrosine | 99.08 | |
| KOG0616 | 355 | consensus cAMP-dependent protein kinase catalytic | 99.08 | |
| cd05114 | 256 | PTKc_Tec_Rlk Catalytic domain of the Protein Tyros | 99.08 | |
| cd05599 | 364 | STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel | 99.08 | |
| PTZ00263 | 329 | protein kinase A catalytic subunit; Provisional | 99.07 | |
| KOG0607 | 463 | consensus MAP kinase-interacting kinase and relate | 99.07 | |
| cd05585 | 312 | STKc_YPK1_like Catalytic domain of Yeast Protein K | 99.07 | |
| cd05629 | 377 | STKc_NDR_like_fungal Catalytic domain of Fungal Nu | 99.07 | |
| cd05600 | 333 | STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- | 99.06 | |
| KOG4250 | 732 | consensus TANK binding protein kinase TBK1 [Signal | 99.06 | |
| cd06650 | 333 | PKc_MEK1 Catalytic domain of the dual-specificity | 99.06 | |
| KOG0591 | 375 | consensus NIMA (never in mitosis)-related G2-speci | 99.06 | |
| KOG0593 | 396 | consensus Predicted protein kinase KKIAMRE [Genera | 99.06 | |
| cd05612 | 291 | STKc_PRKX_like Catalytic domain of PRKX-like Prote | 99.05 | |
| cd05593 | 328 | STKc_PKB_gamma Catalytic domain of the Protein Ser | 99.05 | |
| cd06649 | 331 | PKc_MEK2 Catalytic domain of the dual-specificity | 99.05 | |
| cd05081 | 284 | PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of | 99.05 | |
| cd05107 | 401 | PTKc_PDGFR_beta Catalytic domain of the Protein Ty | 99.05 | |
| cd05625 | 382 | STKc_LATS1 Catalytic domain of the Protein Serine/ | 99.04 | |
| KOG0663 | 419 | consensus Protein kinase PITSLRE and related kinas | 99.04 | |
| PTZ00426 | 340 | cAMP-dependent protein kinase catalytic subunit; P | 99.04 | |
| KOG0193 | 678 | consensus Serine/threonine protein kinase RAF [Sig | 99.04 | |
| cd05096 | 304 | PTKc_DDR1 Catalytic domain of the Protein Tyrosine | 99.03 | |
| KOG0198 | 313 | consensus MEKK and related serine/threonine protei | 99.02 | |
| KOG0658 | 364 | consensus Glycogen synthase kinase-3 [Carbohydrate | 99.02 | |
| cd05588 | 329 | STKc_aPKC Catalytic domain of the Protein Serine/T | 99.02 | |
| cd06646 | 267 | STKc_MAP4K5 Catalytic domain of the Protein Serine | 99.02 | |
| KOG0583 | 370 | consensus Serine/threonine protein kinase [Signal | 99.02 | |
| cd05084 | 252 | PTKc_Fes Catalytic domain of the Protein Tyrosine | 99.02 | |
| cd05628 | 363 | STKc_NDR1 Catalytic domain of the Protein Serine/T | 99.02 | |
| cd05582 | 318 | STKc_RSK_N N-terminal catalytic domain of the Prot | 99.02 | |
| cd05085 | 250 | PTKc_Fer Catalytic domain of the Protein Tyrosine | 99.02 | |
| cd06615 | 308 | PKc_MEK Catalytic domain of the dual-specificity P | 99.02 | |
| cd05594 | 325 | STKc_PKB_alpha Catalytic domain of the Protein Ser | 99.02 | |
| cd06631 | 265 | STKc_YSK4 Catalytic domain of the Protein Serine/T | 99.02 | |
| cd05102 | 338 | PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi | 99.01 | |
| cd06620 | 284 | PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr | 99.01 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.01 | |
| cd06624 | 268 | STKc_ASK Catalytic domain of the Protein Serine/Th | 99.0 | |
| cd05584 | 323 | STKc_p70S6K Catalytic domain of the Protein Serine | 99.0 | |
| cd05598 | 376 | STKc_LATS Catalytic domain of the Protein Serine/T | 99.0 | |
| cd06632 | 258 | STKc_MEKK1_plant Catalytic domain of the Protein S | 98.99 | |
| cd05618 | 329 | STKc_aPKC_iota Catalytic domain of the Protein Ser | 98.99 | |
| cd05087 | 269 | PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein | 98.99 | |
| KOG0032 | 382 | consensus Ca2+/calmodulin-dependent protein kinase | 98.98 | |
| KOG0199 | 1039 | consensus ACK and related non-receptor tyrosine ki | 98.98 | |
| cd05068 | 261 | PTKc_Frk_like Catalytic domain of Fyn-related kina | 98.97 | |
| cd05113 | 256 | PTKc_Btk_Bmx Catalytic domain of the Protein Tyros | 98.97 | |
| cd05033 | 266 | PTKc_EphR Catalytic domain of Ephrin Receptor Prot | 98.97 | |
| cd05591 | 321 | STKc_nPKC_epsilon Catalytic domain of the Protein | 98.97 | |
| cd05570 | 318 | STKc_PKC Catalytic domain of the Protein Serine/Th | 98.97 | |
| cd05619 | 316 | STKc_nPKC_theta Catalytic domain of the Protein Se | 98.97 | |
| cd05072 | 261 | PTKc_Lyn Catalytic domain of the Protein Tyrosine | 98.96 | |
| cd05039 | 256 | PTKc_Csk_like Catalytic domain of C-terminal Src k | 98.96 | |
| cd06629 | 272 | STKc_MAPKKK_Bck1_like Catalytic domain of fungal B | 98.96 | |
| cd06652 | 265 | STKc_MEKK2 Catalytic domain of the Protein Serine/ | 98.96 | |
| cd05106 | 374 | PTKc_CSF-1R Catalytic domain of the Protein Tyrosi | 98.95 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.95 | |
| cd05605 | 285 | STKc_GRK4_like Catalytic domain of G protein-coupl | 98.95 | |
| cd06630 | 268 | STKc_MEKK1 Catalytic domain of the Protein Serine/ | 98.95 | |
| cd05601 | 330 | STKc_CRIK Catalytic domain of the Protein Serine/T | 98.95 | |
| cd05624 | 331 | STKc_MRCK_beta Catalytic domain of the Protein Ser | 98.95 | |
| cd05631 | 285 | STKc_GRK4 Catalytic domain of the Protein Serine/T | 98.95 | |
| cd05590 | 320 | STKc_nPKC_eta Catalytic domain of the Protein Seri | 98.95 | |
| KOG4257 | 974 | consensus Focal adhesion tyrosine kinase FAK, cont | 98.95 | |
| cd05627 | 360 | STKc_NDR2 Catalytic domain of the Protein Serine/T | 98.95 | |
| cd05059 | 256 | PTKc_Tec_like Catalytic domain of Tec-like Protein | 98.94 | |
| cd05148 | 261 | PTKc_Srm_Brk Catalytic domain of the Protein Tyros | 98.94 | |
| cd05597 | 331 | STKc_DMPK_like Catalytic domain of Myotonic Dystro | 98.94 | |
| cd05604 | 325 | STKc_SGK3 Catalytic domain of the Protein Serine/T | 98.94 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.94 | |
| cd05603 | 321 | STKc_SGK2 Catalytic domain of the Protein Serine/T | 98.93 | |
| cd05049 | 280 | PTKc_Trk Catalytic domain of the Protein Tyrosine | 98.93 | |
| KOG4721 | 904 | consensus Serine/threonine protein kinase, contain | 98.93 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.93 | |
| cd05037 | 259 | PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the | 98.93 | |
| cd05573 | 350 | STKc_ROCK_NDR_like Catalytic domain of ROCK- and N | 98.93 | |
| cd06645 | 267 | STKc_MAP4K3 Catalytic domain of the Protein Serine | 98.92 | |
| cd05090 | 283 | PTKc_Ror1 Catalytic domain of the Protein Tyrosine | 98.92 | |
| cd06611 | 280 | STKc_SLK_like Catalytic domain of Ste20-like kinas | 98.92 | |
| cd05093 | 288 | PTKc_TrkB Catalytic domain of the Protein Tyrosine | 98.92 | |
| KOG0582 | 516 | consensus Ste20-like serine/threonine protein kina | 98.92 | |
| cd05063 | 268 | PTKc_EphR_A2 Catalytic domain of the Protein Tyros | 98.92 | |
| cd05608 | 280 | STKc_GRK1 Catalytic domain of the Protein Serine/T | 98.92 | |
| cd05592 | 316 | STKc_nPKC_theta_delta Catalytic domain of the Prot | 98.92 | |
| cd05103 | 343 | PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi | 98.92 | |
| cd05034 | 261 | PTKc_Src_like Catalytic domain of Src kinase-like | 98.92 | |
| cd05078 | 258 | PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain | 98.92 | |
| KOG0574 | 502 | consensus STE20-like serine/threonine kinase MST [ | 98.91 | |
| cd05596 | 370 | STKc_ROCK Catalytic domain of the Protein Serine/T | 98.91 | |
| cd05575 | 323 | STKc_SGK Catalytic domain of the Protein Serine/Th | 98.91 | |
| cd05077 | 262 | PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th | 98.91 | |
| KOG0592 | 604 | consensus 3-phosphoinositide-dependent protein kin | 98.91 | |
| cd08227 | 327 | PK_STRAD_alpha Pseudokinase domain of STE20-relate | 98.91 | |
| cd05042 | 269 | PTKc_Aatyk Catalytic domain of the Protein Tyrosin | 98.91 | |
| cd05066 | 267 | PTKc_EphR_A Catalytic domain of the Protein Tyrosi | 98.91 | |
| cd05607 | 277 | STKc_GRK7 Catalytic domain of the Protein Serine/T | 98.91 | |
| KOG0586 | 596 | consensus Serine/threonine protein kinase [General | 98.91 | |
| cd05623 | 332 | STKc_MRCK_alpha Catalytic domain of the Protein Se | 98.9 | |
| cd05038 | 284 | PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P | 98.9 | |
| cd06651 | 266 | STKc_MEKK3 Catalytic domain of the Protein Serine/ | 98.9 | |
| cd08529 | 256 | STKc_FA2-like Catalytic domain of the Protein Seri | 98.9 | |
| cd05617 | 327 | STKc_aPKC_zeta Catalytic domain of the Protein Ser | 98.9 | |
| cd05108 | 316 | PTKc_EGFR Catalytic domain of the Protein Tyrosine | 98.9 | |
| cd05065 | 269 | PTKc_EphR_B Catalytic domain of the Protein Tyrosi | 98.9 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.9 | |
| PLN00034 | 353 | mitogen-activated protein kinase kinase; Provision | 98.9 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.89 | |
| cd05112 | 256 | PTKc_Itk Catalytic domain of the Protein Tyrosine | 98.89 | |
| cd05094 | 291 | PTKc_TrkC Catalytic domain of the Protein Tyrosine | 98.89 | |
| cd05580 | 290 | STKc_PKA Catalytic domain of the Protein Serine/Th | 98.89 | |
| cd06626 | 264 | STKc_MEKK4 Catalytic domain of the Protein Serine/ | 98.89 | |
| cd05621 | 370 | STKc_ROCK2 Catalytic domain of the Protein Serine/ | 98.89 | |
| cd05116 | 257 | PTKc_Syk Catalytic domain of the Protein Tyrosine | 98.89 | |
| cd05046 | 275 | PTK_CCK4 Pseudokinase domain of the Protein Tyrosi | 98.89 | |
| cd05609 | 305 | STKc_MAST Catalytic domain of the Protein Serine/T | 98.89 | |
| cd06628 | 267 | STKc_MAPKKK_Byr2_like Catalytic domain of fungal B | 98.89 | |
| cd05092 | 280 | PTKc_TrkA Catalytic domain of the Protein Tyrosine | 98.89 | |
| PTZ00267 | 478 | NIMA-related protein kinase; Provisional | 98.89 | |
| cd06656 | 297 | STKc_PAK3 Catalytic domain of the Protein Serine/T | 98.89 | |
| KOG0610 | 459 | consensus Putative serine/threonine protein kinase | 98.88 | |
| cd05620 | 316 | STKc_nPKC_delta Catalytic domain of the Protein Se | 98.88 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.88 | |
| cd05055 | 302 | PTKc_PDGFR Catalytic domain of the Protein Tyrosin | 98.88 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 98.88 | |
| cd05052 | 263 | PTKc_Abl Catalytic domain of the Protein Tyrosine | 98.88 | |
| cd06643 | 282 | STKc_SLK Catalytic domain of the Protein Serine/Th | 98.88 | |
| cd05040 | 257 | PTKc_Ack_like Catalytic domain of the Protein Tyro | 98.88 | |
| cd07848 | 287 | STKc_CDKL5 Catalytic domain of the Serine/Threonin | 98.88 | |
| cd06625 | 263 | STKc_MEKK3_like Catalytic domain of MAP/ERK kinase | 98.87 | |
| KOG0588 | 786 | consensus Serine/threonine protein kinase [Cell cy | 98.87 | |
| cd05086 | 268 | PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi | 98.87 | |
| cd05115 | 257 | PTKc_Zap-70 Catalytic domain of the Protein Tyrosi | 98.87 | |
| cd06654 | 296 | STKc_PAK1 Catalytic domain of the Protein Serine/T | 98.87 | |
| cd06641 | 277 | STKc_MST3 Catalytic domain of the Protein Serine/T | 98.87 | |
| KOG0661 | 538 | consensus MAPK related serine/threonine protein ki | 98.86 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.86 | |
| cd05062 | 277 | PTKc_IGF-1R Catalytic domain of the Protein Tyrosi | 98.86 | |
| cd05111 | 279 | PTK_HER3 Pseudokinase domain of the Protein Tyrosi | 98.86 | |
| cd05048 | 283 | PTKc_Ror Catalytic Domain of the Protein Tyrosine | 98.86 | |
| cd05061 | 288 | PTKc_InsR Catalytic domain of the Protein Tyrosine | 98.86 | |
| cd05632 | 285 | STKc_GRK5 Catalytic domain of the Protein Serine/T | 98.86 | |
| cd07841 | 298 | STKc_CDK7 Catalytic domain of the Serine/Threonine | 98.86 | |
| cd05080 | 283 | PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the | 98.85 | |
| cd06653 | 264 | STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina | 98.85 | |
| cd05041 | 251 | PTKc_Fes_like Catalytic domain of Fes-like Protein | 98.85 | |
| cd05036 | 277 | PTKc_ALK_LTK Catalytic domain of the Protein Tyros | 98.85 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.85 | |
| cd05587 | 324 | STKc_cPKC Catalytic domain of the Protein Serine/T | 98.85 | |
| cd05615 | 323 | STKc_cPKC_alpha Catalytic domain of the Protein Se | 98.85 | |
| cd00192 | 262 | PTKc Catalytic domain of Protein Tyrosine Kinases. | 98.85 | |
| cd05097 | 295 | PTKc_DDR_like Catalytic domain of Discoidin Domain | 98.85 | |
| cd05088 | 303 | PTKc_Tie2 Catalytic domain of the Protein Tyrosine | 98.85 | |
| KOG0201 | 467 | consensus Serine/threonine protein kinase [Signal | 98.85 | |
| KOG0585 | 576 | consensus Ca2+/calmodulin-dependent protein kinase | 98.85 | |
| cd05060 | 257 | PTKc_Syk_like Catalytic domain of Spleen Tyrosine | 98.85 | |
| cd05589 | 324 | STKc_PKN Catalytic domain of the Protein Serine/Th | 98.85 | |
| cd05047 | 270 | PTKc_Tie Catalytic domain of Tie Protein Tyrosine | 98.84 | |
| cd06614 | 286 | STKc_PAK Catalytic domain of the Protein Serine/Th | 98.84 | |
| cd05067 | 260 | PTKc_Lck_Blk Catalytic domain of the Protein Tyros | 98.84 | |
| cd07846 | 286 | STKc_CDKL2_3 Catalytic domain of the Serine/Threon | 98.84 | |
| cd07847 | 286 | STKc_CDKL1_4 Catalytic domain of the Serine/Threon | 98.84 | |
| cd05057 | 279 | PTKc_EGFR_like Catalytic domain of Epidermal Growt | 98.83 | |
| cd05572 | 262 | STKc_cGK_PKG Catalytic domain of the Protein Serin | 98.83 | |
| cd05622 | 371 | STKc_ROCK1 Catalytic domain of the Protein Serine/ | 98.83 | |
| cd06655 | 296 | STKc_PAK2 Catalytic domain of the Protein Serine/T | 98.83 | |
| cd06647 | 293 | STKc_PAK_I Catalytic domain of the Protein Serine/ | 98.83 | |
| cd06621 | 287 | PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek | 98.83 | |
| cd08221 | 256 | STKc_Nek9 Catalytic domain of the Protein Serine/T | 98.83 | |
| cd08228 | 267 | STKc_Nek6 Catalytic domain of the Protein Serine/T | 98.83 | |
| cd05614 | 332 | STKc_MSK2_N N-terminal catalytic domain of the Pro | 98.83 | |
| cd06623 | 264 | PKc_MAPKK_plant_like Catalytic domain of Plant dua | 98.83 | |
| cd05577 | 277 | STKc_GRK Catalytic domain of the Protein Serine/Th | 98.83 | |
| cd05050 | 288 | PTKc_Musk Catalytic domain of the Protein Tyrosine | 98.83 | |
| cd05616 | 323 | STKc_cPKC_beta Catalytic domain of the Protein Ser | 98.82 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.82 | |
| cd05602 | 325 | STKc_SGK1 Catalytic domain of the Protein Serine/T | 98.82 | |
| cd06644 | 292 | STKc_STK10_LOK Catalytic domain of the Protein Ser | 98.82 | |
| cd06622 | 286 | PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS | 98.82 | |
| cd06642 | 277 | STKc_STK25-YSK1 Catalytic domain of the Protein Se | 98.82 | |
| cd05079 | 284 | PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the | 98.82 | |
| cd07871 | 288 | STKc_PCTAIRE3 Catalytic domain of the Serine/Threo | 98.82 | |
| smart00219 | 258 | TyrKc Tyrosine kinase, catalytic domain. Phosphotr | 98.82 | |
| cd08229 | 267 | STKc_Nek7 Catalytic domain of the Protein Serine/T | 98.81 | |
| cd05070 | 260 | PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros | 98.81 | |
| cd05071 | 262 | PTKc_Src Catalytic domain of the Protein Tyrosine | 98.81 | |
| cd06609 | 274 | STKc_MST3_like Catalytic domain of Mammalian Ste20 | 98.81 | |
| cd07859 | 338 | STKc_TDY_MAPK_plant Catalytic domain of the Serine | 98.81 | |
| cd05073 | 260 | PTKc_Hck Catalytic domain of the Protein Tyrosine | 98.81 | |
| cd05045 | 290 | PTKc_RET Catalytic domain of the Protein Tyrosine | 98.81 | |
| cd06640 | 277 | STKc_MST4 Catalytic domain of the Protein Serine/T | 98.81 | |
| cd05578 | 258 | STKc_Yank1 Catalytic domain of the Protein Serine/ | 98.8 | |
| cd06619 | 279 | PKc_MKK5 Catalytic domain of the dual-specificity | 98.8 | |
| cd05630 | 285 | STKc_GRK6 Catalytic domain of the Protein Serine/T | 98.8 | |
| cd08224 | 267 | STKc_Nek6_Nek7 Catalytic domain of the Protein Ser | 98.8 | |
| KOG4236 | 888 | consensus Serine/threonine protein kinase PKC mu/P | 98.8 | |
| cd07853 | 372 | STKc_NLK Catalytic domain of the Serine/Threonine | 98.8 | |
| cd07869 | 303 | STKc_PFTAIRE1 Catalytic domain of the Serine/Threo | 98.8 | |
| cd05056 | 270 | PTKc_FAK Catalytic domain of the Protein Tyrosine | 98.8 | |
| cd05095 | 296 | PTKc_DDR2 Catalytic domain of the Protein Tyrosine | 98.8 | |
| cd05098 | 307 | PTKc_FGFR1 Catalytic domain of the Protein Tyrosin | 98.79 | |
| KOG1989 | 738 | consensus ARK protein kinase family [Signal transd | 98.79 | |
| cd08217 | 265 | STKc_Nek2 Catalytic domain of the Protein Serine/T | 98.79 | |
| cd05109 | 279 | PTKc_HER2 Catalytic domain of the Protein Tyrosine | 98.79 | |
| cd05043 | 280 | PTK_Ryk Pseudokinase domain of Ryk (Receptor relat | 98.79 | |
| cd06627 | 254 | STKc_Cdc7_like Catalytic domain of Cell division c | 98.79 | |
| cd06612 | 256 | STKc_MST1_2 Catalytic domain of the Protein Serine | 98.79 | |
| cd08218 | 256 | STKc_Nek1 Catalytic domain of the Protein Serine/T | 98.79 | |
| cd05579 | 265 | STKc_MAST_like Catalytic domain of Microtubule-ass | 98.79 | |
| cd06606 | 260 | STKc_MAPKKK Catalytic domain of the Protein Serine | 98.79 | |
| cd05051 | 296 | PTKc_DDR Catalytic domain of the Protein Tyrosine | 98.79 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 98.78 | |
| cd06917 | 277 | STKc_NAK1_like Catalytic domain of Fungal Nak1-lik | 98.78 | |
| cd06613 | 262 | STKc_MAP4K3_like Catalytic domain of Mitogen-activ | 98.78 | |
| cd05610 | 669 | STKc_MASTL Catalytic domain of the Protein Serine/ | 98.78 | |
| cd05058 | 262 | PTKc_Met_Ron Catalytic domain of the Protein Tyros | 98.77 | |
| cd06648 | 285 | STKc_PAK_II Catalytic domain of the Protein Serine | 98.77 | |
| cd05089 | 297 | PTKc_Tie1 Catalytic domain of the Protein Tyrosine | 98.77 | |
| cd06637 | 272 | STKc_TNIK Catalytic domain of the Protein Serine/T | 98.77 | |
| cd06658 | 292 | STKc_PAK5 Catalytic domain of the Protein Serine/T | 98.77 | |
| cd08225 | 257 | STKc_Nek5 Catalytic domain of the Protein Serine/T | 98.77 | |
| cd05101 | 304 | PTKc_FGFR2 Catalytic domain of the Protein Tyrosin | 98.76 | |
| cd06657 | 292 | STKc_PAK4 Catalytic domain of the Protein Serine/T | 98.76 | |
| cd05044 | 269 | PTKc_c-ros Catalytic domain of the Protein Tyrosin | 98.76 | |
| cd05069 | 260 | PTKc_Yes Catalytic domain of the Protein Tyrosine | 98.76 | |
| PLN03224 | 507 | probable serine/threonine protein kinase; Provisio | 98.76 | |
| KOG0578 | 550 | consensus p21-activated serine/threonine protein k | 98.76 | |
| PF00069 | 260 | Pkinase: Protein kinase domain Protein kinase; unc | 98.76 | |
| cd06610 | 267 | STKc_OSR1_SPAK Catalytic domain of the Protein Ser | 98.76 | |
| cd05613 | 290 | STKc_MSK1_N N-terminal catalytic domain of the Pro | 98.75 | |
| cd05122 | 253 | PKc_STE Catalytic domain of STE family Protein Kin | 98.75 | |
| cd05586 | 330 | STKc_Sck1_like Catalytic domain of Suppressor of l | 98.75 | |
| cd06638 | 286 | STKc_myosinIIIA Catalytic domain of the Protein Se | 98.75 | |
| cd06659 | 297 | STKc_PAK6 Catalytic domain of the Protein Serine/T | 98.75 | |
| cd08219 | 255 | STKc_Nek3 Catalytic domain of the Protein Serine/T | 98.74 | |
| cd05032 | 277 | PTKc_InsR_like Catalytic domain of Insulin Recepto | 98.74 | |
| cd05110 | 303 | PTKc_HER4 Catalytic domain of the Protein Tyrosine | 98.74 | |
| cd06605 | 265 | PKc_MAPKK Catalytic domain of the dual-specificity | 98.73 | |
| cd07872 | 309 | STKc_PCTAIRE2 Catalytic domain of the Serine/Threo | 98.73 | |
| cd05082 | 256 | PTKc_Csk Catalytic domain of the Protein Tyrosine | 98.73 | |
| PTZ00024 | 335 | cyclin-dependent protein kinase; Provisional | 98.73 | |
| cd05053 | 293 | PTKc_FGFR Catalytic domain of the Protein Tyrosine | 98.73 | |
| cd05035 | 273 | PTKc_Axl_like Catalytic Domain of Axl-like Protein | 98.73 | |
| cd05581 | 280 | STKc_PDK1 Catalytic domain of the Protein Serine/T | 98.72 | |
| cd07836 | 284 | STKc_Pho85 Catalytic domain of the Serine/Threonin | 98.72 | |
| cd07832 | 286 | STKc_CCRK Catalytic domain of the Serine/Threonine | 98.72 | |
| cd07844 | 291 | STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like | 98.72 | |
| cd07873 | 301 | STKc_PCTAIRE1 Catalytic domain of the Serine/Threo | 98.71 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 98.71 | |
| cd05633 | 279 | STKc_GRK3 Catalytic domain of the Protein Serine/T | 98.71 | |
| cd05075 | 272 | PTKc_Axl Catalytic domain of the Protein Tyrosine | 98.71 | |
| cd05054 | 337 | PTKc_VEGFR Catalytic domain of the Protein Tyrosin | 98.71 | |
| cd05574 | 316 | STKc_phototropin_like Catalytic domain of Phototro | 98.71 | |
| cd08220 | 256 | STKc_Nek8 Catalytic domain of the Protein Serine/T | 98.71 | |
| KOG0577 | 948 | consensus Serine/threonine protein kinase [Signal | 98.7 | |
| cd07835 | 283 | STKc_CDK1_like Catalytic domain of Cyclin-Dependen | 98.7 | |
| cd05099 | 314 | PTKc_FGFR4 Catalytic domain of the Protein Tyrosin | 98.7 | |
| cd05100 | 334 | PTKc_FGFR3 Catalytic domain of the Protein Tyrosin | 98.69 | |
| cd06607 | 307 | STKc_TAO Catalytic domain of the Protein Serine/Th | 98.69 | |
| PHA03212 | 391 | serine/threonine kinase US3; Provisional | 98.69 | |
| cd07860 | 284 | STKc_CDK2_3 Catalytic domain of the Serine/Threoni | 98.68 | |
| cd07833 | 288 | STKc_CDKL Catalytic domain of Cyclin-Dependent pro | 98.68 | |
| cd05611 | 260 | STKc_Rim15_like Catalytic domain of fungal Rim15-l | 98.68 | |
| cd06639 | 291 | STKc_myosinIIIB Catalytic domain of the Protein Se | 98.67 | |
| cd07870 | 291 | STKc_PFTAIRE2 Catalytic domain of the Serine/Threo | 98.67 | |
| cd05123 | 250 | STKc_AGC Catalytic domain of AGC family Protein Se | 98.67 | |
| cd05091 | 283 | PTKc_Ror2 Catalytic domain of the Protein Tyrosine | 98.67 | |
| cd07861 | 285 | STKc_CDK1_euk Catalytic domain of the Serine/Threo | 98.66 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.66 | |
| KOG0662 | 292 | consensus Cyclin-dependent kinase CDK5 [Intracellu | 98.66 | |
| cd08223 | 257 | STKc_Nek4 Catalytic domain of the Protein Serine/T | 98.66 | |
| cd08528 | 269 | STKc_Nek10 Catalytic domain of the Protein Serine/ | 98.66 | |
| smart00221 | 225 | STYKc Protein kinase; unclassified specificity. Ph | 98.66 | |
| PTZ00283 | 496 | serine/threonine protein kinase; Provisional | 98.65 | |
| KOG0033 | 355 | consensus Ca2+/calmodulin-dependent protein kinase | 98.65 | |
| cd08215 | 258 | STKc_Nek Catalytic domain of the Protein Serine/Th | 98.65 | |
| cd06635 | 317 | STKc_TAO1 Catalytic domain of the Protein Serine/T | 98.65 | |
| cd05583 | 288 | STKc_MSK_N N-terminal catalytic domain of the Prot | 98.64 | |
| KOG4717 | 864 | consensus Serine/threonine protein kinase [Signal | 98.64 | |
| cd05083 | 254 | PTKc_Chk Catalytic domain of the Protein Tyrosine | 98.64 | |
| KOG0589 | 426 | consensus Serine/threonine protein kinase [General | 98.64 | |
| KOG0694 | 694 | consensus Serine/threonine protein kinase [Signal | 98.64 | |
| cd06617 | 283 | PKc_MKK3_6 Catalytic domain of the dual-specificit | 98.64 | |
| cd05606 | 278 | STKc_beta_ARK Catalytic domain of the Protein Seri | 98.63 | |
| cd07867 | 317 | STKc_CDC2L6 Catalytic domain of Serine/Threonine K | 98.63 | |
| cd06608 | 275 | STKc_myosinIII_like Catalytic domain of Class III | 98.63 | |
| cd07868 | 317 | STKc_CDK8 Catalytic domain of the Serine/Threonine | 98.63 | |
| cd08226 | 328 | PK_STRAD_beta Pseudokinase domain of STE20-related | 98.62 | |
| KOG0660 | 359 | consensus Mitogen-activated protein kinase [Signal | 98.62 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 98.62 | |
| cd08530 | 256 | STKc_CNK2-like Catalytic domain of the Protein Ser | 98.61 | |
| cd07843 | 293 | STKc_CDC2L1 Catalytic domain of the Serine/Threoni | 98.61 | |
| PLN00009 | 294 | cyclin-dependent kinase A; Provisional | 98.61 | |
| cd07830 | 283 | STKc_MAK_like Catalytic domain of Male germ cell-A | 98.61 | |
| cd07840 | 287 | STKc_CDK9_like Catalytic domain of Cyclin-Dependen | 98.61 | |
| cd07852 | 337 | STKc_MAPK15 Catalytic domain of the Serine/Threoni | 98.61 | |
| cd05074 | 273 | PTKc_Tyro3 Catalytic domain of the Protein Tyrosin | 98.6 | |
| KOG0594 | 323 | consensus Protein kinase PCTAIRE and related kinas | 98.6 | |
| PTZ00036 | 440 | glycogen synthase kinase; Provisional | 98.59 | |
| cd07831 | 282 | STKc_MOK Catalytic domain of the Serine/Threonine | 98.58 | |
| cd07839 | 284 | STKc_CDK5 Catalytic domain of the Serine/Threonine | 98.58 | |
| PHA03211 | 461 | serine/threonine kinase US3; Provisional | 98.57 | |
| cd07864 | 302 | STKc_CDK12 Catalytic domain of the Serine/Threonin | 98.57 | |
| cd06633 | 313 | STKc_TAO3 Catalytic domain of the Protein Serine/T | 98.57 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.56 | |
| cd07845 | 309 | STKc_CDK10 Catalytic domain of the Serine/Threonin | 98.56 | |
| KOG0599 | 411 | consensus Phosphorylase kinase gamma subunit [Carb | 98.56 | |
| cd07858 | 337 | STKc_TEY_MAPK_plant Catalytic domain of the Serine | 98.56 | |
| KOG0587 | 953 | consensus Traf2- and Nck-interacting kinase and re | 98.55 | |
| KOG0584 | 632 | consensus Serine/threonine protein kinase [General | 98.55 | |
| cd07865 | 310 | STKc_CDK9 Catalytic domain of the Serine/Threonine | 98.55 | |
| PHA03390 | 267 | pk1 serine/threonine-protein kinase 1; Provisional | 98.55 | |
| PRK10345 | 210 | hypothetical protein; Provisional | 98.54 | |
| cd08222 | 260 | STKc_Nek11 Catalytic domain of the Protein Serine/ | 98.54 | |
| cd07855 | 334 | STKc_ERK5 Catalytic domain of the Serine/Threonine | 98.53 | |
| cd07856 | 328 | STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre | 98.53 | |
| cd07862 | 290 | STKc_CDK6 Catalytic domain of the Serine/Threonine | 98.52 | |
| cd07842 | 316 | STKc_CDK8_like Catalytic domain of Cyclin-Dependen | 98.52 | |
| cd06636 | 282 | STKc_MAP4K4_6 Catalytic domain of the Protein Seri | 98.52 | |
| cd07834 | 330 | STKc_MAPK Catalytic domain of the Serine/Threonine | 98.51 | |
| cd07876 | 359 | STKc_JNK2 Catalytic domain of the Serine/Threonine | 98.49 | |
| PHA03207 | 392 | serine/threonine kinase US3; Provisional | 98.48 | |
| cd07829 | 282 | STKc_CDK_like Catalytic domain of Cyclin-Dependent | 98.48 | |
| cd07880 | 343 | STKc_p38gamma_MAPK12 Catalytic domain of the Serin | 98.48 | |
| cd06634 | 308 | STKc_TAO2 Catalytic domain of the Protein Serine/T | 98.47 | |
| KOG0579 | 1187 | consensus Ste20-like serine/threonine protein kina | 98.46 | |
| cd06616 | 288 | PKc_MKK4 Catalytic domain of the dual-specificity | 98.46 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 98.44 | |
| KOG0200 | 609 | consensus Fibroblast/platelet-derived growth facto | 98.44 | |
| cd07854 | 342 | STKc_MAPK4_6 Catalytic domain of the Serine/Threon | 98.44 | |
| PTZ00284 | 467 | protein kinase; Provisional | 98.44 | |
| cd07849 | 336 | STKc_ERK1_2_like Catalytic domain of Extracellular | 98.44 | |
| cd08216 | 314 | PK_STRAD Pseudokinase domain of STE20-related kina | 98.43 | |
| cd06618 | 296 | PKc_MKK7 Catalytic domain of the dual-specificity | 98.43 | |
| cd07863 | 288 | STKc_CDK4 Catalytic domain of the Serine/Threonine | 98.43 | |
| KOG0576 | 829 | consensus Mitogen-activated protein kinase kinase | 98.43 | |
| cd05147 | 190 | RIO1_euk RIO kinase family; eukaryotic RIO1, catal | 98.42 | |
| KOG4645 | 1509 | consensus MAPKKK (MAP kinase kinase kinase) SSK2 a | 98.42 | |
| cd00180 | 215 | PKc Catalytic domain of Protein Kinases. Protein K | 98.42 | |
| cd07878 | 343 | STKc_p38beta_MAPK11 Catalytic domain of the Serine | 98.4 | |
| cd07837 | 295 | STKc_CdkB_plant Catalytic domain of the Serine/Thr | 98.4 | |
| KOG0666 | 438 | consensus Cyclin C-dependent kinase CDK8 [Transcri | 98.4 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.39 | |
| cd05118 | 283 | STKc_CMGC Catalytic domain of CMGC family Serine/T | 98.39 | |
| cd07875 | 364 | STKc_JNK1 Catalytic domain of the Serine/Threonine | 98.37 | |
| PHA03209 | 357 | serine/threonine kinase US3; Provisional | 98.36 | |
| cd07877 | 345 | STKc_p38alpha_MAPK14 Catalytic domain of the Serin | 98.36 | |
| cd07850 | 353 | STKc_JNK Catalytic domain of the Serine/Threonine | 98.35 | |
| smart00220 | 244 | S_TKc Serine/Threonine protein kinases, catalytic | 98.35 | |
| KOG1151 | 775 | consensus Tousled-like protein kinase [Signal tran | 98.34 | |
| KOG2345 | 302 | consensus Serine/threonine protein kinase/TGF-beta | 98.34 | |
| cd07874 | 355 | STKc_JNK3 Catalytic domain of the Serine/Threonine | 98.33 | |
| cd05576 | 237 | STKc_RPK118_like Catalytic domain of the Protein S | 98.33 | |
| PF08263 | 43 | LRRNT_2: Leucine rich repeat N-terminal domain; In | 98.31 | |
| cd07838 | 287 | STKc_CDK4_6_like Catalytic domain of Cyclin-Depend | 98.3 | |
| PRK14879 | 211 | serine/threonine protein kinase; Provisional | 98.29 | |
| cd07857 | 332 | STKc_MPK1 Catalytic domain of the Serine/Threonine | 98.28 | |
| cd07866 | 311 | STKc_BUR1 Catalytic domain of the Serine/Threonine | 98.28 | |
| TIGR03724 | 199 | arch_bud32 Kae1-associated kinase Bud32. Members o | 98.26 | |
| KOG0667 | 586 | consensus Dual-specificity tyrosine-phosphorylatio | 98.25 | |
| cd07879 | 342 | STKc_p38delta_MAPK13 Catalytic domain of the Serin | 98.24 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.24 | |
| KOG1035 | 1351 | consensus eIF-2alpha kinase GCN2 [Translation, rib | 98.22 | |
| cd07851 | 343 | STKc_p38 Catalytic domain of the Serine/Threonine | 98.21 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.21 | |
| KOG1006 | 361 | consensus Mitogen-activated protein kinase (MAPK) | 98.2 | |
| KOG1152 | 772 | consensus Signal transduction serine/threonine kin | 98.19 | |
| cd05145 | 190 | RIO1_like RIO kinase family; RIO1, RIO3 and simila | 98.17 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.16 | |
| KOG0690 | 516 | consensus Serine/threonine protein kinase [Signal | 98.16 | |
| KOG0604 | 400 | consensus MAP kinase-activated protein kinase 2 [S | 98.15 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.15 | |
| PRK09605 | 535 | bifunctional UGMP family protein/serine/threonine | 98.07 | |
| PRK10359 | 232 | lipopolysaccharide core biosynthesis protein; Prov | 98.06 | |
| PHA03210 | 501 | serine/threonine kinase US3; Provisional | 98.05 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 98.0 | |
| KOG0596 | 677 | consensus Dual specificity; serine/threonine and t | 97.99 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.98 | |
| KOG0986 | 591 | consensus G protein-coupled receptor kinase [Signa | 97.96 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.89 | |
| KOG0195 | 448 | consensus Integrin-linked kinase [Signal transduct | 97.89 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.86 | |
| KOG0608 | 1034 | consensus Warts/lats-like serine threonine kinases | 97.84 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.81 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.81 | |
| cd05144 | 198 | RIO2_C RIO kinase family; RIO2, C-terminal catalyt | 97.78 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.78 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 97.72 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.72 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.71 | |
| KOG0669 | 376 | consensus Cyclin T-dependent kinase CDK9 [Cell cyc | 97.69 | |
| TIGR01982 | 437 | UbiB 2-polyprenylphenol 6-hydroxylase. This model | 97.68 | |
| KOG0668 | 338 | consensus Casein kinase II, alpha subunit [Signal | 97.67 | |
| PLN03225 | 566 | Serine/threonine-protein kinase SNT7; Provisional | 97.65 | |
| smart00090 | 237 | RIO RIO-like kinase. | 97.64 | |
| KOG0695 | 593 | consensus Serine/threonine protein kinase [Signal | 97.6 | |
| KOG0983 | 391 | consensus Mitogen-activated protein kinase (MAPK) | 97.58 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.58 | |
| cd05120 | 155 | APH_ChoK_like Aminoglycoside 3'-phosphotransferase | 97.48 | |
| KOG1027 | 903 | consensus Serine/threonine protein kinase and endo | 97.46 | |
| KOG1024 | 563 | consensus Receptor-like protein tyrosine kinase RY | 97.33 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.31 | |
| PRK12274 | 218 | serine/threonine protein kinase; Provisional | 97.3 | |
| PHA02882 | 294 | putative serine/threonine kinase; Provisional | 97.3 | |
| KOG0984 | 282 | consensus Mitogen-activated protein kinase (MAPK) | 97.23 | |
| KOG1166 | 974 | consensus Mitotic checkpoint serine/threonine prot | 97.19 | |
| cd05119 | 187 | RIO RIO kinase family, catalytic domain. The RIO k | 97.17 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.16 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.15 | |
| KOG0664 | 449 | consensus Nemo-like MAPK-related serine/threonine | 97.14 | |
| KOG1167 | 418 | consensus Serine/threonine protein kinase of the C | 97.13 | |
| PRK04750 | 537 | ubiB putative ubiquinone biosynthesis protein UbiB | 97.11 | |
| PRK01723 | 239 | 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed | 96.99 | |
| KOG1345 | 378 | consensus Serine/threonine kinase [Signal transduc | 96.9 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 96.83 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 96.83 | |
| KOG0603 | 612 | consensus Ribosomal protein S6 kinase [Signal tran | 96.82 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.74 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 96.73 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 96.73 | |
| COG0515 | 384 | SPS1 Serine/threonine protein kinase [General func | 96.65 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 96.64 | |
| cd05154 | 223 | ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an | 96.37 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.17 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.11 | |
| cd05151 | 170 | ChoK Choline Kinase (ChoK). The ChoK subfamily is | 95.77 | |
| KOG1164 | 322 | consensus Casein kinase (serine/threonine/tyrosine | 95.71 | |
| KOG0671 | 415 | consensus LAMMER dual specificity kinases [Signal | 95.69 | |
| KOG1163 | 341 | consensus Casein kinase (serine/threonine/tyrosine | 95.45 | |
| KOG1290 | 590 | consensus Serine/threonine protein kinase [Signal | 95.44 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 95.28 | |
| COG2112 | 201 | Predicted Ser/Thr protein kinase [Signal transduct | 95.0 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.87 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.84 | |
| KOG3741 | 655 | consensus Poly(A) ribonuclease subunit [RNA proces | 94.61 | |
| PF03109 | 119 | ABC1: ABC1 family; InterPro: IPR004147 This entry | 94.02 | |
| COG0661 | 517 | AarF Predicted unusual protein kinase [General fun | 93.93 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 93.7 | |
| KOG1235 | 538 | consensus Predicted unusual protein kinase [Genera | 93.67 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-73 Score=700.95 Aligned_cols=678 Identities=29% Similarity=0.435 Sum_probs=430.4
Q ss_pred HhhHHhcCCCHHHHHHHHHhhhcCCCCCCcccccCccccCCCCCCCCCCCCccccC-CCcEEEEEeCCCCCccccCcccc
Q 003307 8 VLLLVVNALGQSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITCT-NGYVTSIMLNDMGLVGNFSFPTI 86 (832)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~~~k~~~~~~~~~~~l~~w~~~~~~~~~c~~~w~gv~C~-~~~v~~l~l~~~~l~g~~~~~~~ 86 (832)
+.++..+...+.|+.+|++||+++ .+|.+ .+.+|... .++| .|.||+|+ .++|+.|+|+++++.|.+ ++.+
T Consensus 18 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~-~~~~w~~~---~~~c--~w~gv~c~~~~~v~~L~L~~~~i~~~~-~~~~ 89 (968)
T PLN00113 18 FLFLNFSMLHAEELELLLSFKSSI-NDPLK-YLSNWNSS---ADVC--LWQGITCNNSSRVVSIDLSGKNISGKI-SSAI 89 (968)
T ss_pred HHHHHccCCCHHHHHHHHHHHHhC-CCCcc-cCCCCCCC---CCCC--cCcceecCCCCcEEEEEecCCCccccC-ChHH
Confidence 344455666789999999999998 46765 37899642 4666 99999998 578999999999999887 5678
Q ss_pred cCCCCCCEEEcCCCCCcccCC-C-CCCCCCCCEEECCCCCCC----------------------ccCcccccCCCCCCEE
Q 003307 87 IGLKMLCNVSVSNNQLMGNIT-D-IGSIQSLEFLDLSHNLFH----------------------GLIPSGIVSLKNLMLL 142 (832)
Q Consensus 87 ~~l~~L~~L~Ls~n~l~~~~~-~-~~~l~~L~~L~Ls~N~l~----------------------~~~p~~~~~l~~L~~L 142 (832)
..+++|+.|+|++|++.+.+| . +..+++|++|+|++|+++ +.+|..|+++++|++|
T Consensus 90 ~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 169 (968)
T PLN00113 90 FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVL 169 (968)
T ss_pred hCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEE
Confidence 888888888888888877666 3 335555555555555544 4555566666667777
Q ss_pred EcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCC
Q 003307 143 NISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISEN 222 (832)
Q Consensus 143 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N 222 (832)
+|++|.+.+.+|..|.++++|++|+|++|++.+.+|..++++++|++|+|++|.+++.+|..++. +++|++|++++|
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~---l~~L~~L~L~~n 246 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG---LTSLNHLDLVYN 246 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc---CCCCCEEECcCc
Confidence 77777666666666666667777777766666666666666666666666666666666655443 366677777777
Q ss_pred CCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCC
Q 003307 223 SLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG 301 (832)
Q Consensus 223 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~ 301 (832)
.+++.+|.. +..+++|+.|++++|.+.+.+| .+..+++|+.|++++|.+.+.+|..+ ..+++|+.|++++|.+++
T Consensus 247 ~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 247 NLTGPIPSS--LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV--IQLQNLEILHLFSNNFTG 322 (968)
T ss_pred eeccccChh--HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH--cCCCCCcEEECCCCccCC
Confidence 666655554 6666666666666666666555 55566666666666666665555544 344455555555555544
Q ss_pred ccCcc--------------------------CCCCCCEEEecCCeecccCCCCC---CCCCEEecCCCCCcCcchhhccc
Q 003307 302 PVGSI--------------------------TSATLKKVNLSSNKLSGSLPARV---GHCTIVDLSNNRLSGDLSRMQNW 352 (832)
Q Consensus 302 ~~~~~--------------------------~~~~L~~L~L~~N~l~~~~p~~l---~~l~~L~L~~N~l~~~~~~~~~~ 352 (832)
..+.. ...+|+.|++++|++++.+|..+ .+++.|++++|.+.+.++..+..
T Consensus 323 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 402 (968)
T PLN00113 323 KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA 402 (968)
T ss_pred cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhC
Confidence 33311 12345555555555554444432 23444555555555544444444
Q ss_pred cCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCc-------------
Q 003307 353 GNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLL------------- 419 (832)
Q Consensus 353 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~------------- 419 (832)
..+|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|
T Consensus 403 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~l 482 (968)
T PLN00113 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDL 482 (968)
T ss_pred CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEEC
Confidence 5567777777777777777777777777777777777777666666666666655555555554444
Q ss_pred ----------ccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEe
Q 003307 420 ----------PSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLN 489 (832)
Q Consensus 420 ----------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 489 (832)
..|..+++|+.|+|++|++++.+|..+..+ .+|++|+|++|.++|.+|..+..+++|+.||
T Consensus 483 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 553 (968)
T PLN00113 483 SRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC---------KKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553 (968)
T ss_pred cCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCc---------cCCCEEECCCCcccccCChhHhCcccCCEEE
Confidence 444444455555555555554444433322 2489999999999999999999999999999
Q ss_pred CcCCcCcccCCCCcc--CCCcEEEcCCCccccccCcc--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCc
Q 003307 490 LSNNKFEGSIPDGLP--NGLKEFNVSFNNLSGVVPEN--LRNFPDSAFHPGNSLLTFPNSPSQQDVPDLTLRGHGNHMKP 565 (832)
Q Consensus 490 Ls~N~l~g~ip~~~~--~~L~~l~ls~N~l~g~~p~~--~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (832)
|++|+++|.+|..+. .+|+.|++++|+++|.+|.. +..+...++. ||+.+|++......+. +.. .. +.
T Consensus 554 Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~-~n~~lc~~~~~~~~~~----c~~--~~-~~ 625 (968)
T PLN00113 554 LSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVA-GNIDLCGGDTTSGLPP----CKR--VR-KT 625 (968)
T ss_pred CCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhc-CCccccCCccccCCCC----Ccc--cc-cc
Confidence 999999999998776 67999999999999999965 5566666664 8888886532211100 000 01 11
Q ss_pred ceeEEeeehhhHHHHHHHHHHHHHHHHHHHhhcCCCCcccCccccccccCccccccccCcccCCCCCCCCccccCCCCCC
Q 003307 566 ATKIALIVGLVCGVTMVALLCMLIYFRALWQRHGRDSFKRDGEQKAFSEGSSSLSQRSGVNKKGDPSLSSFTFHQDPLPS 645 (832)
Q Consensus 566 ~~~~~iiv~i~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (832)
.....+++++++++++++++++++++++++++... +..+. ..+. +....+.
T Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~----------------~~~~~~~------ 676 (968)
T PLN00113 626 PSWWFYITCTLGAFLVLALVAFGFVFIRGRNNLEL---KRVEN----EDGT----------------WELQFFD------ 676 (968)
T ss_pred ceeeeehhHHHHHHHHHHHHHHHHHHHHhhhcccc---ccccc----cccc----------------ccccccc------
Confidence 11122222222222222233333333222211000 00000 0000 0000000
Q ss_pred CCcccccccCCccceecCCccccCCCCCCcCCCCCCCccccCCCCCCCCCCCccccCCCcccccCcccccCceeeecccc
Q 003307 646 SPMESAYDAGETSSVVTKPKELYHPDSVRKDEGLSSPVSLLSSSNPSQSKNSRFTKNSDVLNACSPEKLAGDLHLFDVSL 725 (832)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (832)
. ...+
T Consensus 677 -------------------------------------------------------~--------------------~~~~ 681 (968)
T PLN00113 677 -------------------------------------------------------S--------------------KVSK 681 (968)
T ss_pred -------------------------------------------------------c--------------------ccch
Confidence 0 0000
Q ss_pred ccchhhhccc--ccCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC
Q 003307 726 MFTAEELSHA--PAEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE 802 (832)
Q Consensus 726 ~~~~~~l~~~--~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~ 802 (832)
.++++++..+ ..++||+|+||.||+|+. .+|..||||+++..... ..+|++.+++++|||||+++|+|...+.
T Consensus 682 ~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~----~~~~~~~l~~l~HpnIv~~~~~~~~~~~ 757 (968)
T PLN00113 682 SITINDILSSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSI----PSSEIADMGKLQHPNIVKLIGLCRSEKG 757 (968)
T ss_pred hhhHHHHHhhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCccc----cHHHHHHHhhCCCCCcceEEEEEEcCCC
Confidence 1222332221 267899999999999997 58999999998643221 2356889999999999999999998777
Q ss_pred ceEEEEEecCCCCCHHHHHhcCCCcccc
Q 003307 803 HEKLVISNYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 803 ~~~~lv~e~~~~GsL~~~l~~~~~l~w~ 830 (832)
.++|||||++|+|.+++++ ++|+
T Consensus 758 --~~lv~Ey~~~g~L~~~l~~---l~~~ 780 (968)
T PLN00113 758 --AYLIHEYIEGKNLSEVLRN---LSWE 780 (968)
T ss_pred --CEEEEeCCCCCcHHHHHhc---CCHH
Confidence 9999999999999999974 5664
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-48 Score=476.76 Aligned_cols=434 Identities=30% Similarity=0.440 Sum_probs=337.6
Q ss_pred CcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEE
Q 003307 65 GYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLN 143 (832)
Q Consensus 65 ~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 143 (832)
..++.++|+++.+.+.+ +..+.++++|++|+|++|.+.+.+| .++++++|++|+|++|.+++.+|..|+++++|++|+
T Consensus 140 ~~L~~L~Ls~n~~~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 140 PNLETLDLSNNMLSGEI-PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred CCCCEEECcCCcccccC-ChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 35778888888888777 4678888888888888888888777 788888888888888888888888888888888888
Q ss_pred cccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCC
Q 003307 144 ISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENS 223 (832)
Q Consensus 144 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~ 223 (832)
|++|++++.+|..|+++++|++|+|++|++++.+|..++++++|++|+|++|.+++.+|..+.. +++|+.|++++|.
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~---l~~L~~L~Ls~n~ 295 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS---LQKLISLDLSDNS 295 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh---ccCcCEEECcCCe
Confidence 8888888888888888888888888888888888888888888888888888888777766543 4677777777777
Q ss_pred CeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCc
Q 003307 224 LVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGP 302 (832)
Q Consensus 224 l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~ 302 (832)
+.+.+|.. +..+++|+.|++++|.+.+.+| .+..+++|+.|++++|.+++.+|..+ ..+.+|+.|++++|++++.
T Consensus 296 l~~~~p~~--~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~Ls~n~l~~~ 371 (968)
T PLN00113 296 LSGEIPEL--VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL--GKHNNLTVLDLSTNNLTGE 371 (968)
T ss_pred eccCCChh--HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH--hCCCCCcEEECCCCeeEee
Confidence 77666655 6667777777777777766666 56666777777777777766666655 4455666666666666554
Q ss_pred cCc--------------------------cCCCCCCEEEecCCeecccCCCCC---CCCCEEecCCCCCcCcchhhcccc
Q 003307 303 VGS--------------------------ITSATLKKVNLSSNKLSGSLPARV---GHCTIVDLSNNRLSGDLSRMQNWG 353 (832)
Q Consensus 303 ~~~--------------------------~~~~~L~~L~L~~N~l~~~~p~~l---~~l~~L~L~~N~l~~~~~~~~~~~ 353 (832)
+|. ....+|+.|++++|++++.+|..+ .+++.|++++|.+++.++..+...
T Consensus 372 ~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 451 (968)
T PLN00113 372 IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDM 451 (968)
T ss_pred CChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccC
Confidence 331 122356666666666666666543 345577777777777666555555
Q ss_pred CcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEec
Q 003307 354 NYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNL 433 (832)
Q Consensus 354 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 433 (832)
++|+.|+|++|.+.+.+|..+ ...+|+.|++++|++++.+|..+.++++|+.|+|++|++.+.+|..+..+++|++|+|
T Consensus 452 ~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 530 (968)
T PLN00113 452 PSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530 (968)
T ss_pred CCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEEC
Confidence 678888888888877777655 4578999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCcc-CCCcEEEc
Q 003307 434 SGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLP-NGLKEFNV 512 (832)
Q Consensus 434 s~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~~L~~l~l 512 (832)
++|.++|.+|..+.... +|+.|||++|+++|.+|..+.++++|+.|++++|+++|.+|..-. ..+....+
T Consensus 531 s~N~l~~~~p~~~~~l~---------~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~ 601 (968)
T PLN00113 531 SHNQLSGQIPASFSEMP---------VLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAV 601 (968)
T ss_pred CCCcccccCChhHhCcc---------cCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhh
Confidence 99999999998776554 399999999999999999999999999999999999999997532 23333344
Q ss_pred CCCc
Q 003307 513 SFNN 516 (832)
Q Consensus 513 s~N~ 516 (832)
.+|.
T Consensus 602 ~~n~ 605 (968)
T PLN00113 602 AGNI 605 (968)
T ss_pred cCCc
Confidence 5554
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=328.18 Aligned_cols=369 Identities=22% Similarity=0.209 Sum_probs=264.3
Q ss_pred CCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECc
Q 003307 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLS 193 (832)
Q Consensus 114 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls 193 (832)
.-+.||||+|.|+.+-+..|.++++|+.+++.+|.++ .+|..-+-..+|+.|+|.+|.|+.+..+.++.++.|+.||||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 4556788888887777777788888888888888887 566655555668888888888877777778888888888888
Q ss_pred cCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccC
Q 003307 194 NNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQ 272 (832)
Q Consensus 194 ~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~ 272 (832)
.|.|+.. | ...++.-.++++|+|++|.|+..-... |..+.+|..|.|+.|+++..++ .|..+++|+.|+|..|+
T Consensus 158 rN~is~i-~--~~sfp~~~ni~~L~La~N~It~l~~~~--F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 158 RNLISEI-P--KPSFPAKVNIKKLNLASNRITTLETGH--FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hchhhcc-c--CCCCCCCCCceEEeecccccccccccc--ccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 8877732 2 222333356777777777776544333 7777777888888888875555 67777888888888887
Q ss_pred CCCCCChhhhhhCCCCCCEEECCCCCCCCccCc--cCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhc
Q 003307 273 LSGSLPVALLQESSMMLSELDLSLNQLEGPVGS--ITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQ 350 (832)
Q Consensus 273 l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~--~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~ 350 (832)
|. .+ ..+....+++|+.|.|..|++...... ....++++|+|..|+++ ..-....
T Consensus 233 ir-iv-e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~---------------------~vn~g~l 289 (873)
T KOG4194|consen 233 IR-IV-EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ---------------------AVNEGWL 289 (873)
T ss_pred ee-ee-hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh---------------------hhhcccc
Confidence 75 22 222224566677777777766543332 22234555555555544 3333222
Q ss_pred cccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCe
Q 003307 351 NWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTD 430 (832)
Q Consensus 351 ~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 430 (832)
..++.|+.|+|++|.|..+-++.+.-+++|++|+|++|+|+...+..|..+..|++|+|++|.++.+-...|..+.+|+.
T Consensus 290 fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~ 369 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHK 369 (873)
T ss_pred cccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhh
Confidence 23337889999999998888888888899999999999999888888888999999999999998887788888999999
Q ss_pred EeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCcc-CCCcE
Q 003307 431 LNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLP-NGLKE 509 (832)
Q Consensus 431 L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~~L~~ 509 (832)
|||++|.++..|-..... +....+|+.|+|.+|+|..+...+|.++.+|++|||.+|.+...-|..+. ..|+.
T Consensus 370 LdLr~N~ls~~IEDaa~~------f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~ 443 (873)
T KOG4194|consen 370 LDLRSNELSWCIEDAAVA------FNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKE 443 (873)
T ss_pred hcCcCCeEEEEEecchhh------hccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhh
Confidence 999999988766543211 11133588999999999877667899999999999999999877777765 46666
Q ss_pred EEcCCCcc
Q 003307 510 FNVSFNNL 517 (832)
Q Consensus 510 l~ls~N~l 517 (832)
|-+..-.+
T Consensus 444 Lv~nSssf 451 (873)
T KOG4194|consen 444 LVMNSSSF 451 (873)
T ss_pred hhhcccce
Confidence 66654333
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=319.16 Aligned_cols=373 Identities=20% Similarity=0.211 Sum_probs=266.9
Q ss_pred CCCCCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccC
Q 003307 51 DGCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLI 129 (832)
Q Consensus 51 ~~c~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~ 129 (832)
..|+|.-.-..|+...+.+++- ..+.|.+| ..-+.||+++|.++..-+ .|.++++|+.++|.+|.++ .+
T Consensus 48 a~c~c~~~lldcs~~~lea~~~--~~l~g~lp-------~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~I 117 (873)
T KOG4194|consen 48 ATCPCNTRLLDCSDRELEAIDK--SRLKGFLP-------SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RI 117 (873)
T ss_pred CcCCCCceeeecCccccccccc--cccCCcCc-------cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hc
Confidence 4455554445555444443322 22344442 345679999999998777 7899999999999999998 66
Q ss_pred cccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCC
Q 003307 130 PSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSS 209 (832)
Q Consensus 130 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 209 (832)
|.......+|+.|+|.+|.|+.+-.+++..++.|+.|||+.|.|+.+.-..|..-.++++|+|++|.|+ ....+.|.
T Consensus 118 P~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It---~l~~~~F~ 194 (873)
T KOG4194|consen 118 PRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT---TLETGHFD 194 (873)
T ss_pred ccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc---cccccccc
Confidence 776666677999999999999888889999999999999999999888888888889999999999999 55666777
Q ss_pred CCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCC
Q 003307 210 FISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMM 288 (832)
Q Consensus 210 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~ 288 (832)
.+.+|..|.|+.|+++..-+. .|+++++|+.|+|..|++.-.-- .|..+++|+.|.|..|.++ .+.+..| ..+.+
T Consensus 195 ~lnsL~tlkLsrNrittLp~r--~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~F-y~l~k 270 (873)
T KOG4194|consen 195 SLNSLLTLKLSRNRITTLPQR--SFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAF-YGLEK 270 (873)
T ss_pred ccchheeeecccCcccccCHH--HhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcce-eeecc
Confidence 788999999999999743333 38889999999999999985433 8999999999999999998 4454444 45788
Q ss_pred CCEEECCCCCCCCccC--ccCCCCCCEEEecCCeecccCCCCCC---CCCEEecCCCCCcCcchhhccccCcccEEEcCC
Q 003307 289 LSELDLSLNQLEGPVG--SITSATLKKVNLSSNKLSGSLPARVG---HCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSS 363 (832)
Q Consensus 289 L~~L~L~~N~l~~~~~--~~~~~~L~~L~L~~N~l~~~~p~~l~---~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~ 363 (832)
+++|+|..|++...-. ......|+.|+|++|.|...-++.+. +|+.|+|++|+|+...+..+..+..|++|.|++
T Consensus 271 me~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~ 350 (873)
T KOG4194|consen 271 MEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH 350 (873)
T ss_pred cceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccc
Confidence 9999999999986543 33456888999999988876666554 344555555555555555555555555555555
Q ss_pred CcCCCCCcccccCCCCCCEEEccCCcCCCCcc---cccCCCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcccc
Q 003307 364 NFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLP---AVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSG 440 (832)
Q Consensus 364 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 440 (832)
|+++.+-...|..+++|+.|||++|.|+..+. ..|..|+.|+.|+|.+|+|..+.-.+|.+++.|+.|||.+|.|..
T Consensus 351 Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 351 NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCccee
Confidence 55555555555555555555555555554332 234445555555555555555555555555555555555555443
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=307.44 Aligned_cols=422 Identities=27% Similarity=0.335 Sum_probs=322.3
Q ss_pred EEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEccc
Q 003307 67 VTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISS 146 (832)
Q Consensus 67 v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 146 (832)
.+.++++.+.++.. |++++.+..+..|+.+.|+++..+++++.+.+|+.|+.++|.+. ..|++++.+..|+.|+..+
T Consensus 70 l~vl~~~~n~l~~l--p~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~ 146 (565)
T KOG0472|consen 70 LTVLNVHDNKLSQL--PAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATN 146 (565)
T ss_pred eeEEEeccchhhhC--CHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccc
Confidence 45566666666543 46777778888888888887766667788888888888888887 4566778888888888888
Q ss_pred ccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCee
Q 003307 147 NSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVG 226 (832)
Q Consensus 147 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~ 226 (832)
|+++ ..|+++.++.+|..|++.+|++....|..+. ++.|++||...|.++ .+|..++. +.+|..|+|..|++.
T Consensus 147 N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~---l~~L~~LyL~~Nki~- 219 (565)
T KOG0472|consen 147 NQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGG---LESLELLYLRRNKIR- 219 (565)
T ss_pred cccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcc---hhhhHHHHhhhcccc-
Confidence 8888 5677888888888888888888876666665 888888888888886 67777665 478888999999985
Q ss_pred ccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCc
Q 003307 227 ELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGS 305 (832)
Q Consensus 227 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~ 305 (832)
. .|. |..+..|++|+++.|++.-... ....+.++.+|||..|+++ +.|+.+ ..+.+|++||+++|.|++..+.
T Consensus 220 ~-lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~--clLrsL~rLDlSNN~is~Lp~s 293 (565)
T KOG0472|consen 220 F-LPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEI--CLLRSLERLDLSNNDISSLPYS 293 (565)
T ss_pred c-CCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHH--HHhhhhhhhcccCCccccCCcc
Confidence 2 335 8888999999999999884333 4558899999999999998 888888 4677899999999999988887
Q ss_pred cCCCCCCEEEecCCeeccc-------------------------------------CC-CC------CCCCCEEecCCCC
Q 003307 306 ITSATLKKVNLSSNKLSGS-------------------------------------LP-AR------VGHCTIVDLSNNR 341 (832)
Q Consensus 306 ~~~~~L~~L~L~~N~l~~~-------------------------------------~p-~~------l~~l~~L~L~~N~ 341 (832)
.....|+.|-+.+|.+... .| .. +-+.+.|+++.-+
T Consensus 294 LgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q 373 (565)
T KOG0472|consen 294 LGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ 373 (565)
T ss_pred cccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc
Confidence 7777899999999886410 00 00 1134467888888
Q ss_pred CcCcchhhccccC--cccEEEcCCCcCCCCCcccccCCCCCC-EEEccCCcCCCCcccccCCCCCCCEEEccCCcccccC
Q 003307 342 LSGDLSRMQNWGN--YVEDIHLSSNFLTGMVPNQTSQFLRLT-SFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFL 418 (832)
Q Consensus 342 l~~~~~~~~~~~~--~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 418 (832)
++..+...|.... -+..++++.|++. .+|..+..+..+. .+.+++|.+. .+|..+..+++|..|+|++|.+.. +
T Consensus 374 lt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~-L 450 (565)
T KOG0472|consen 374 LTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLND-L 450 (565)
T ss_pred cccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhhh-c
Confidence 8877766654432 3677889999987 5676666655544 4555666555 888899999999999999999885 6
Q ss_pred cccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCccc
Q 003307 419 LPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGS 498 (832)
Q Consensus 419 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 498 (832)
|..++.+..|+.||++.|+|. .+|....... .++.+-.++|++....|..+.++.+|+.|||.+|.+. .
T Consensus 451 P~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq---------~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~ 519 (565)
T KOG0472|consen 451 PEEMGSLVRLQTLNLSFNRFR-MLPECLYELQ---------TLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-Q 519 (565)
T ss_pred chhhhhhhhhheecccccccc-cchHHHhhHH---------HHHHHHhccccccccChHHhhhhhhcceeccCCCchh-h
Confidence 778888889999999999986 3443322211 2566666778888776777999999999999999998 6
Q ss_pred CCCCcc--CCCcEEEcCCCccc
Q 003307 499 IPDGLP--NGLKEFNVSFNNLS 518 (832)
Q Consensus 499 ip~~~~--~~L~~l~ls~N~l~ 518 (832)
||..++ .+|++|++++|+|.
T Consensus 520 IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 520 IPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred CChhhccccceeEEEecCCccC
Confidence 887777 68999999999987
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-35 Score=295.67 Aligned_cols=431 Identities=27% Similarity=0.351 Sum_probs=337.4
Q ss_pred EEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEccc
Q 003307 67 VTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISS 146 (832)
Q Consensus 67 v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 146 (832)
.+.+.++.+.+.-. .+.+.++..|++|+++.|++...+|+++.+..++.|+.++|+++ .+|..++.+.+|+.|+.++
T Consensus 47 l~~lils~N~l~~l--~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 47 LQKLILSHNDLEVL--REDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhhhhccCchhhc--cHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence 34566667665533 36788999999999999999988889999999999999999998 6788999999999999999
Q ss_pred ccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCee
Q 003307 147 NSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVG 226 (832)
Q Consensus 147 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~ 226 (832)
|.+. ..|+.++.+..|+.|+..+|+++ ..|+.+..+.+|..|++.+|.+....|..+. ++.|++||...|.+.
T Consensus 124 n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~----m~~L~~ld~~~N~L~- 196 (565)
T KOG0472|consen 124 NELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA----MKRLKHLDCNSNLLE- 196 (565)
T ss_pred ccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH----HHHHHhcccchhhhh-
Confidence 9999 67889999999999999999998 5677788899999999999999855444332 589999999999886
Q ss_pred ccCCCCCCCCCCCcCEEEccCCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCcc
Q 003307 227 ELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSI 306 (832)
Q Consensus 227 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~ 306 (832)
.+|+. ++.+.+|+.|++..|++. ..|+|..+..|++|+++.|+|. .+|.+.. ..+..+..|||..|+++..+..+
T Consensus 197 tlP~~--lg~l~~L~~LyL~~Nki~-~lPef~gcs~L~Elh~g~N~i~-~lpae~~-~~L~~l~vLDLRdNklke~Pde~ 271 (565)
T KOG0472|consen 197 TLPPE--LGGLESLELLYLRRNKIR-FLPEFPGCSLLKELHVGENQIE-MLPAEHL-KHLNSLLVLDLRDNKLKEVPDEI 271 (565)
T ss_pred cCChh--hcchhhhHHHHhhhcccc-cCCCCCccHHHHHHHhcccHHH-hhHHHHh-cccccceeeeccccccccCchHH
Confidence 67887 999999999999999998 5679999999999999999998 8888875 47888999999999999877655
Q ss_pred CC-CCCCEEEecCCeecccCCCCCCCC--CEEecCCCCCcCcchhhcc--------------------------------
Q 003307 307 TS-ATLKKVNLSSNKLSGSLPARVGHC--TIVDLSNNRLSGDLSRMQN-------------------------------- 351 (832)
Q Consensus 307 ~~-~~L~~L~L~~N~l~~~~p~~l~~l--~~L~L~~N~l~~~~~~~~~-------------------------------- 351 (832)
.. .+|++||+++|.|+ .+|..++++ +.|-+.+|.+..+-..+..
T Consensus 272 clLrsL~rLDlSNN~is-~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~ 350 (565)
T KOG0472|consen 272 CLLRSLERLDLSNNDIS-SLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL 350 (565)
T ss_pred HHhhhhhhhcccCCccc-cCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence 44 57999999999999 567777765 5777888877432111100
Q ss_pred ---------ccCcccEEEcCCCcCCCCCcccccCCCC---CCEEEccCCcCCCCcccccCCCCCCCE-EEccCCcccccC
Q 003307 352 ---------WGNYVEDIHLSSNFLTGMVPNQTSQFLR---LTSFKVSNNSLEGDLPAVLGTYPELKV-IDLSLNHLNGFL 418 (832)
Q Consensus 352 ---------~~~~L~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~Ls~N~l~~~~p~~~~~l~~L~~-L~Ls~N~l~~~~ 418 (832)
..-+.+.|+++.-+++. +|+......+ .+.++++.|++. .+|..+..+..+.+ +++++|.+ +.+
T Consensus 351 ~~~~~~~~~~~i~tkiL~~s~~qlt~-VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv 427 (565)
T KOG0472|consen 351 PSESFPDIYAIITTKILDVSDKQLTL-VPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFV 427 (565)
T ss_pred CCCcccchhhhhhhhhhccccccccc-CCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccc
Confidence 00135566777777764 3433322222 677888888887 67776666555544 44454544 467
Q ss_pred cccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCccc
Q 003307 419 LPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGS 498 (832)
Q Consensus 419 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 498 (832)
|..+..+++|..|+|++|-+. .+|........ |+.||+|.|+|. .+|..+..+..|+.+-.++|++...
T Consensus 428 ~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~---------Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~v 496 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVR---------LQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSV 496 (565)
T ss_pred hHHHHhhhcceeeecccchhh-hcchhhhhhhh---------hheecccccccc-cchHHHhhHHHHHHHHhcccccccc
Confidence 788888999999999988775 57777666543 889999999887 6788888888888888888888755
Q ss_pred CCCCcc--CCCcEEEcCCCccccccCccCCCC
Q 003307 499 IPDGLP--NGLKEFNVSFNNLSGVVPENLRNF 528 (832)
Q Consensus 499 ip~~~~--~~L~~l~ls~N~l~g~~p~~~~~~ 528 (832)
-|+.+. ..|..||+.+|.+.. ||..+.++
T Consensus 497 d~~~l~nm~nL~tLDL~nNdlq~-IPp~Lgnm 527 (565)
T KOG0472|consen 497 DPSGLKNMRNLTTLDLQNNDLQQ-IPPILGNM 527 (565)
T ss_pred ChHHhhhhhhcceeccCCCchhh-CChhhccc
Confidence 455454 689999999999875 45444433
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-33 Score=293.58 Aligned_cols=363 Identities=21% Similarity=0.271 Sum_probs=168.3
Q ss_pred cEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcc
Q 003307 66 YVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNIS 145 (832)
Q Consensus 66 ~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 145 (832)
-|+++|++++.++|.--|..+..++.++.|.|...++...+.+++.|.+|++|.+++|++. .+...++.|+.|+.+++.
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVR 86 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhh
Confidence 3566666666666443344555555555555555555433335555555555555555554 223445555555555555
Q ss_pred cccccc-cCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCC
Q 003307 146 SNSFEG-TFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSL 224 (832)
Q Consensus 146 ~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l 224 (832)
.|++.. -+|..+..+..|+.||||+|++. +.|..+..-.++-.|+||+|+|. .||..+ |.+|+.|-+|+|++|++
T Consensus 87 ~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~l--finLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSL--FINLTDLLFLDLSNNRL 162 (1255)
T ss_pred ccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchH--HHhhHhHhhhccccchh
Confidence 555531 23444555555555555555554 44555555555555555555554 233222 22234444444444444
Q ss_pred eeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCC-CCCChhhhhhCCCCCCEEECCCCCCCCc
Q 003307 225 VGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLS-GSLPVALLQESSMMLSELDLSLNQLEGP 302 (832)
Q Consensus 225 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~-~~~p~~~~~~~~~~L~~L~L~~N~l~~~ 302 (832)
. .+||. +..+.+|+.|+|++|.+....- .+..+++|+.|.+++.+-+ ..+|.++ ..+.+|..+|++.|.+.
T Consensus 163 e-~LPPQ--~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl--d~l~NL~dvDlS~N~Lp-- 235 (1255)
T KOG0444|consen 163 E-MLPPQ--IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL--DDLHNLRDVDLSENNLP-- 235 (1255)
T ss_pred h-hcCHH--HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch--hhhhhhhhccccccCCC--
Confidence 3 23333 3444444444444444432111 2333344444444443221 1233333 22233333333333332
Q ss_pred cCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCE
Q 003307 303 VGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTS 382 (832)
Q Consensus 303 ~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 382 (832)
.+|+.+.++. +|+.|+||+|.|+. .........+|+.
T Consensus 236 ---------------------~vPecly~l~---------------------~LrrLNLS~N~ite-L~~~~~~W~~lEt 272 (1255)
T KOG0444|consen 236 ---------------------IVPECLYKLR---------------------NLRRLNLSGNKITE-LNMTEGEWENLET 272 (1255)
T ss_pred ---------------------cchHHHhhhh---------------------hhheeccCcCceee-eeccHHHHhhhhh
Confidence 2222221111 24444444444432 1122233344444
Q ss_pred EEccCCcCCCCcccccCCCCCCCEEEccCCcccc-cCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccc
Q 003307 383 FKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNG-FLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSL 461 (832)
Q Consensus 383 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L 461 (832)
|+||.|+++ .+|.+++.+++|+.|++.+|+++- -+|..++.+.+|+.+..++|++. ..|..++.|.. |
T Consensus 273 LNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~k---------L 341 (1255)
T KOG0444|consen 273 LNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVK---------L 341 (1255)
T ss_pred hccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHH---------H
Confidence 555555554 444455555555555555554431 13444555555555555555543 33444443332 5
Q ss_pred cEEEccCCcCcccCChhhhcCCCCCEEeCcCCcC
Q 003307 462 TSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKF 495 (832)
Q Consensus 462 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 495 (832)
+.|.|+.|++. .+|+.+--|+.|..|||..|.=
T Consensus 342 ~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 342 QKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred HHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 55555555554 4566666666777777776653
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-32 Score=302.38 Aligned_cols=418 Identities=25% Similarity=0.309 Sum_probs=272.9
Q ss_pred EEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEccc
Q 003307 67 VTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISS 146 (832)
Q Consensus 67 v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 146 (832)
..+|+++++.++ .+ |..+..+.+|+.|+++.|.|...+.+..++.+|++|+|.+|.+. ..|..+..+.+|++|+++.
T Consensus 47 L~~l~lsnn~~~-~f-p~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS-SF-PIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eEEeeccccccc-cC-CchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccch
Confidence 445555554432 22 23455555555555555555543335555555555555555555 4455555555555555555
Q ss_pred ccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCC----------------CC
Q 003307 147 NSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDS----------------SF 210 (832)
Q Consensus 147 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~----------------~~ 210 (832)
|++. .+|..+..++.++.++.++|.... .++... ++.++|..|.+.+.++..+..+ +.
T Consensus 124 N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~----~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~ 197 (1081)
T KOG0618|consen 124 NHFG-PIPLVIEVLTAEEELAASNNEKIQ----RLGQTS-IKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSN 197 (1081)
T ss_pred hccC-CCchhHHhhhHHHHHhhhcchhhh----hhcccc-chhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhh
Confidence 5555 344444444444444444441000 011111 3333444444444443333222 22
Q ss_pred CCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCC
Q 003307 211 ISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLS 290 (832)
Q Consensus 211 l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~ 290 (832)
+.+|+.|....|+++... -.-++|+.|+.++|.++...+ -....+|++++++.|+++ .+|.++ ..+.+|+
T Consensus 198 ~~~l~~l~c~rn~ls~l~------~~g~~l~~L~a~~n~l~~~~~-~p~p~nl~~~dis~n~l~-~lp~wi--~~~~nle 267 (1081)
T KOG0618|consen 198 LANLEVLHCERNQLSELE------ISGPSLTALYADHNPLTTLDV-HPVPLNLQYLDISHNNLS-NLPEWI--GACANLE 267 (1081)
T ss_pred ccchhhhhhhhcccceEE------ecCcchheeeeccCcceeecc-ccccccceeeecchhhhh-cchHHH--Hhcccce
Confidence 233344444444333211 123566677777777763332 223457899999999998 678766 6788999
Q ss_pred EEECCCCCCCCccCcc-CCCCCCEEEecCCeecccCCC---CCCCCCEEecCCCCCcCcchhhccccCc-ccEEEcCCCc
Q 003307 291 ELDLSLNQLEGPVGSI-TSATLKKVNLSSNKLSGSLPA---RVGHCTIVDLSNNRLSGDLSRMQNWGNY-VEDIHLSSNF 365 (832)
Q Consensus 291 ~L~L~~N~l~~~~~~~-~~~~L~~L~L~~N~l~~~~p~---~l~~l~~L~L~~N~l~~~~~~~~~~~~~-L~~L~Ls~N~ 365 (832)
.++..+|+++.....+ ...+|+.|++.+|.+. .+|. .+.++++|+|..|+|...+...+..... |..|..+.|.
T Consensus 268 ~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~ 346 (1081)
T KOG0618|consen 268 ALNANHNRLVALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNK 346 (1081)
T ss_pred EecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcc
Confidence 9999999996544433 3458889999999887 3343 3567889999999998877755554443 7778888888
Q ss_pred CCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcccccCCcc
Q 003307 366 LTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQ 445 (832)
Q Consensus 366 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 445 (832)
+.....-.-..+..|+.|++.+|.|+...-..+.+..+|+.|+|++|+|..++...+.++..|++|+||+|+++ .+|..
T Consensus 347 l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~t 425 (1081)
T KOG0618|consen 347 LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDT 425 (1081)
T ss_pred ccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHH
Confidence 87544323334567999999999999888778889999999999999999888888899999999999999998 46666
Q ss_pred cccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCc-ccCCCCcc-CCCcEEEcCCCc
Q 003307 446 EIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFE-GSIPDGLP-NGLKEFNVSFNN 516 (832)
Q Consensus 446 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-g~ip~~~~-~~L~~l~ls~N~ 516 (832)
...+. .|++|...+|++. ..| .+..+++|+.+|+|.|+|+ +.+|...+ +.|++||+++|.
T Consensus 426 va~~~---------~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 426 VANLG---------RLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred HHhhh---------hhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 55544 3899999999998 455 8999999999999999996 45677777 899999999997
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-32 Score=286.43 Aligned_cols=361 Identities=23% Similarity=0.338 Sum_probs=258.5
Q ss_pred CCCCCEEEcCCCCCcc-cCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEe
Q 003307 89 LKMLCNVSVSNNQLMG-NIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYL 166 (832)
Q Consensus 89 l~~L~~L~Ls~n~l~~-~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 166 (832)
|+.++-.|+++|.++| ..| +...+++++.|.|...++. .+|+.++.|.+|++|.+++|++. .+-..+..|+.|+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence 5667888899998884 456 7888888888888888887 56888888888888888888888 455678888888888
Q ss_pred eCcCCCCC-CccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEc
Q 003307 167 DLRANRFG-GDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDA 245 (832)
Q Consensus 167 ~L~~N~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~L 245 (832)
++.+|++. .-+|..+-.+..|+.||||+|++. ..|..+. .-+++-.|+|++|+|.. ||.. .|.+++.|-.|||
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE---~AKn~iVLNLS~N~Iet-IPn~-lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE---YAKNSIVLNLSYNNIET-IPNS-LFINLTDLLFLDL 157 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh---hhcCcEEEEcccCcccc-CCch-HHHhhHhHhhhcc
Confidence 88888875 346666777888888888888887 3343332 22455566666666542 2221 2445555555555
Q ss_pred cCCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeec-cc
Q 003307 246 SNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLS-GS 324 (832)
Q Consensus 246 s~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~-~~ 324 (832)
|+|++...+|.+..+..|++|+|++|.+.-. .+ ..++ ...+|+.|.+++.+=+ ..
T Consensus 158 S~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hf---QL--rQLP-------------------smtsL~vLhms~TqRTl~N 213 (1255)
T KOG0444|consen 158 SNNRLEMLPPQIRRLSMLQTLKLSNNPLNHF---QL--RQLP-------------------SMTSLSVLHMSNTQRTLDN 213 (1255)
T ss_pred ccchhhhcCHHHHHHhhhhhhhcCCChhhHH---HH--hcCc-------------------cchhhhhhhcccccchhhc
Confidence 5555554444555555555555555544200 00 0011 1123444444433221 22
Q ss_pred CCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCC
Q 003307 325 LPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPEL 404 (832)
Q Consensus 325 ~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 404 (832)
+|.++..+. +|..+|||.|.+. ..|+.+.++.+|+.|+||+|+|+ .+....+...+|
T Consensus 214 ~Ptsld~l~---------------------NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~l 270 (1255)
T KOG0444|consen 214 IPTSLDDLH---------------------NLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENL 270 (1255)
T ss_pred CCCchhhhh---------------------hhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhh
Confidence 343333332 7899999999998 78999999999999999999998 555566677899
Q ss_pred CEEEccCCcccccCcccccCCCCCCeEeccCCccc-ccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCC
Q 003307 405 KVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFS-GPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFH 483 (832)
Q Consensus 405 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~ 483 (832)
++|+||.|+++. .|..+..+++|+.|.+.+|+++ .-||..++... .|+++..++|.+. ..|..+..+.
T Consensus 271 EtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~---------~Levf~aanN~LE-lVPEglcRC~ 339 (1255)
T KOG0444|consen 271 ETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI---------QLEVFHAANNKLE-LVPEGLCRCV 339 (1255)
T ss_pred hhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhh---------hhHHHHhhccccc-cCchhhhhhH
Confidence 999999999985 7889999999999999999987 23666665544 3889999999987 7899999999
Q ss_pred CCCEEeCcCCcCcccCCCCcc--CCCcEEEcCCCc
Q 003307 484 NLVYLNLSNNKFEGSIPDGLP--NGLKEFNVSFNN 516 (832)
Q Consensus 484 ~L~~L~Ls~N~l~g~ip~~~~--~~L~~l~ls~N~ 516 (832)
.|+.|.|++|.+- ++|+.+. +.|++||+..|.
T Consensus 340 kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 340 KLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred HHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 9999999999997 6888765 789999999885
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-30 Score=288.30 Aligned_cols=415 Identities=25% Similarity=0.325 Sum_probs=314.6
Q ss_pred EEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEccc
Q 003307 67 VTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISS 146 (832)
Q Consensus 67 v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 146 (832)
++.+++..+.+.. .|.+.+.+.-+|+.|||++|++...+..+..+.+|+.|+++.|.|. ..|.+..++.+|++|+|.+
T Consensus 23 ~~~ln~~~N~~l~-~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 23 LQILNLRRNSLLS-RPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHhhhcccccccc-CchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheecc
Confidence 5566666554432 1123444445599999999999866558999999999999999998 5578899999999999999
Q ss_pred ccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCee
Q 003307 147 NSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVG 226 (832)
Q Consensus 147 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~ 226 (832)
|.+. ..|..+..+++|++||+++|.+. .+|..+..++.++.+..++|.... .++. ..++.++|..|.+.+
T Consensus 101 n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~----~lg~----~~ik~~~l~~n~l~~ 170 (1081)
T KOG0618|consen 101 NRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQ----RLGQ----TSIKKLDLRLNVLGG 170 (1081)
T ss_pred chhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhh----hhcc----ccchhhhhhhhhccc
Confidence 9998 78999999999999999999996 788889999999999999993221 2222 237888888888887
Q ss_pred ccCCCCCCCCCCCcCEEEccCCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCcc
Q 003307 227 ELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSI 306 (832)
Q Consensus 227 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~ 306 (832)
.++.. +..+.. .|||++|.+. .-.+..+.+|+.|....|+++. +. ...++|+.|+.+.|.++......
T Consensus 171 ~~~~~--i~~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~-l~-----~~g~~l~~L~a~~n~l~~~~~~p 238 (1081)
T KOG0618|consen 171 SFLID--IYNLTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQLSE-LE-----ISGPSLTALYADHNPLTTLDVHP 238 (1081)
T ss_pred chhcc--hhhhhe--eeecccchhh--hhhhhhccchhhhhhhhcccce-EE-----ecCcchheeeeccCcceeecccc
Confidence 77665 555555 6999999887 3356677788888888888872 21 23457888888888888555555
Q ss_pred CCCCCCEEEecCCeecccCCCCC---CCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEE
Q 003307 307 TSATLKKVNLSSNKLSGSLPARV---GHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSF 383 (832)
Q Consensus 307 ~~~~L~~L~L~~N~l~~~~p~~l---~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 383 (832)
...+|+++++++|++++ +|.++ .+++.++..+|+++..+..++... +|+.|.+.+|.+. -+|....+++.|++|
T Consensus 239 ~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~-~L~~l~~~~nel~-yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLVALPLRISRIT-SLVSLSAAYNELE-YIPPFLEGLKSLRTL 315 (1081)
T ss_pred ccccceeeecchhhhhc-chHHHHhcccceEecccchhHHhhHHHHhhhh-hHHHHHhhhhhhh-hCCCcccccceeeee
Confidence 56688888888888884 45544 466788888888866555444433 4777777777776 345556667777777
Q ss_pred EccCCcCCCCccccc-------------------------CCCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcc
Q 003307 384 KVSNNSLEGDLPAVL-------------------------GTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNF 438 (832)
Q Consensus 384 ~Ls~N~l~~~~p~~~-------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 438 (832)
+|..|+|....+..+ ..++.|+.|++.+|+|+....+.+.+...|+.|+|++|++
T Consensus 316 dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 316 DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred eehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence 777777763222111 1234578889999999988888899999999999999998
Q ss_pred cccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCcc-CCCcEEEcCCCcc
Q 003307 439 SGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLP-NGLKEFNVSFNNL 517 (832)
Q Consensus 439 ~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~~L~~l~ls~N~l 517 (832)
. .+|........ .|+.|+||+|+|+ .+|..+..+..|++|...+|++. ..|.... +.|+.+|+|.|+|
T Consensus 396 ~-~fpas~~~kle--------~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 396 N-SFPASKLRKLE--------ELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred c-cCCHHHHhchH--------HhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchh
Confidence 6 56665544332 4899999999999 77899999999999999999998 5664333 7899999999999
Q ss_pred cc
Q 003307 518 SG 519 (832)
Q Consensus 518 ~g 519 (832)
+-
T Consensus 465 ~~ 466 (1081)
T KOG0618|consen 465 SE 466 (1081)
T ss_pred hh
Confidence 74
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-25 Score=223.36 Aligned_cols=334 Identities=22% Similarity=0.275 Sum_probs=226.6
Q ss_pred CCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEccc-ccccccCCCCCCCCCCCCEeeC
Q 003307 91 MLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISS-NSFEGTFPSGFGGLGKLKYLDL 168 (832)
Q Consensus 91 ~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L 168 (832)
.-+.++|..|+|+..++ .|+.+++|+.||||+|+|+.+.|++|.++.+|..|-+.+ |+|+......|++|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 45667888888887777 788888888888888888888888888888877776665 8888766677888888888888
Q ss_pred cCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCC------------------------
Q 003307 169 RANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSL------------------------ 224 (832)
Q Consensus 169 ~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l------------------------ 224 (832)
.-|++.-+..+.|..+++|..|.+.+|.+... + -+.+..+..++.+.+..|.+
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i-~--~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSI-C--KGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhh-c--cccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 88888877778888888888888888777621 1 12233344445554444431
Q ss_pred ------------------------------------eeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEE
Q 003307 225 ------------------------------------VGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILR 267 (832)
Q Consensus 225 ------------------------------------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~ 267 (832)
...+-+...|..+++|+.|+|++|+++++-+ +|..+..+++|.
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 0011122236788999999999999998777 899999999999
Q ss_pred ccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCC--CCCCEEEecCCeeccc-----------------CCC-
Q 003307 268 LGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITS--ATLKKVNLSSNKLSGS-----------------LPA- 327 (832)
Q Consensus 268 L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~--~~L~~L~L~~N~l~~~-----------------~p~- 327 (832)
|..|+|. .+....| ..+..|+.|+|++|+|+...|..+. ..|.+|+|-.|.+... .|.
T Consensus 305 L~~N~l~-~v~~~~f-~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~C 382 (498)
T KOG4237|consen 305 LTRNKLE-FVSSGMF-QGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRC 382 (498)
T ss_pred cCcchHH-HHHHHhh-hccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCC
Confidence 9999997 4444444 4677899999999999987775554 4788888888876421 111
Q ss_pred -CCCCCCEEecCCCCCcCcc---hhhc---------cccCcccE-EEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCC
Q 003307 328 -RVGHCTIVDLSNNRLSGDL---SRMQ---------NWGNYVED-IHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGD 393 (832)
Q Consensus 328 -~l~~l~~L~L~~N~l~~~~---~~~~---------~~~~~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 393 (832)
.-+.++.+.++++.+...- +... ...+-+.+ ...+++.+. .+|..+. ..-.+|++.+|.++ .
T Consensus 383 q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~ 458 (498)
T KOG4237|consen 383 QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-S 458 (498)
T ss_pred CCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-c
Confidence 1122345555555443211 1000 00111222 223333333 3333221 23567899999998 6
Q ss_pred cccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEeccCC
Q 003307 394 LPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGN 436 (832)
Q Consensus 394 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 436 (832)
+|.. .+.+| .+|+++|+++......|.++++|.+|-|++|
T Consensus 459 vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 459 VPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 6666 56677 8999999998887788999999999998876
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=241.33 Aligned_cols=343 Identities=22% Similarity=0.238 Sum_probs=164.4
Q ss_pred CCCCCCCCEEECCCCC------CCccCcccccCCC-CCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhh
Q 003307 109 IGSIQSLEFLDLSHNL------FHGLIPSGIVSLK-NLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLL 181 (832)
Q Consensus 109 ~~~l~~L~~L~Ls~N~------l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l 181 (832)
|.++.+|+.|.+..+. +...+|..|..++ +|+.|++.+|.+. .+|..| ...+|+.|+|.+|++. .++..+
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~ 630 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV 630 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc
Confidence 4445555555554332 2223444444443 3555555555554 344444 3455555555555554 234444
Q ss_pred hcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCCCccccc
Q 003307 182 SQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVF 261 (832)
Q Consensus 182 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 261 (832)
..+++|+.|+|+++...+.+| .+..+++|+.|+|++|.....+|.. +..+++|+.|++++|...+.+|....++
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip----~ls~l~~Le~L~L~~c~~L~~lp~s--i~~L~~L~~L~L~~c~~L~~Lp~~i~l~ 704 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIP----DLSMATNLETLKLSDCSSLVELPSS--IQYLNKLEDLDMSRCENLEILPTGINLK 704 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCC----ccccCCcccEEEecCCCCccccchh--hhccCCCCEEeCCCCCCcCccCCcCCCC
Confidence 555555555555544332333 1333455555555555444444444 5555666666666554434444322555
Q ss_pred cccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCC
Q 003307 262 SLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNR 341 (832)
Q Consensus 262 ~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~ 341 (832)
+|+.|++++|...+.+|.. ..+|+.|++++|.++.........+|++|++.++... .++..
T Consensus 705 sL~~L~Lsgc~~L~~~p~~-----~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~-~l~~~------------- 765 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDI-----STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSE-KLWER------------- 765 (1153)
T ss_pred CCCEEeCCCCCCccccccc-----cCCcCeeecCCCccccccccccccccccccccccchh-hcccc-------------
Confidence 6666666665444344321 2345555555555543222222334444444332211 00000
Q ss_pred CcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCccc
Q 003307 342 LSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPS 421 (832)
Q Consensus 342 l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 421 (832)
+....+.......+|+.|+|++|...+.+|..+.++++|+.|+|++|..-+.+|..+ ++++|+.|++++|.....+|..
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~ 844 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI 844 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc
Confidence 000001111122356666666666555666666666666666666654333455444 4566666666665433333321
Q ss_pred ccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCC
Q 003307 422 FFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNN 493 (832)
Q Consensus 422 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 493 (832)
.++|+.|+|++|.++ .+|..+.... +|+.|+|++|+--..+|..+..+++|+.|+++++
T Consensus 845 ---~~nL~~L~Ls~n~i~-~iP~si~~l~---------~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 845 ---STNISDLNLSRTGIE-EVPWWIEKFS---------NLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred ---ccccCEeECCCCCCc-cChHHHhcCC---------CCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 245566666666554 2343332222 2556666553222234445555566666666555
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=240.38 Aligned_cols=336 Identities=18% Similarity=0.250 Sum_probs=203.8
Q ss_pred cccccCCCCCCEEEccccc------ccccCCCCCCCCC-CCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccC
Q 003307 130 PSGIVSLKNLMLLNISSNS------FEGTFPSGFGGLG-KLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLD 202 (832)
Q Consensus 130 p~~~~~l~~L~~L~Ls~N~------l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~ 202 (832)
+.+|.++.+|+.|.+..+. +...+|..|..++ +|+.|++.+|.+. .+|..| ...+|++|+|.+|.+. .++
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccc
Confidence 4456667777777765543 2233455555553 4666666666654 333333 3456666666666654 222
Q ss_pred CCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCCCCCChhh
Q 003307 203 LGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVAL 281 (832)
Q Consensus 203 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~ 281 (832)
..+ ..+++|+.|+|+++.....+| . +..+++|+.|++++|.....+| .+..+++|+.|++++|..-..+|..+
T Consensus 628 ~~~---~~l~~Lk~L~Ls~~~~l~~ip-~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 628 DGV---HSLTGLRNIDLRGSKNLKEIP-D--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred ccc---ccCCCCCEEECCCCCCcCcCC-c--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC
Confidence 222 234555555555544333332 1 4445555555555544333344 44555555555555543333444332
Q ss_pred hhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEc
Q 003307 282 LQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHL 361 (832)
Q Consensus 282 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~L 361 (832)
.++ +|+.|++++|...+.+|....+++.|++++|.+...+... ...+|+.|++
T Consensus 702 ---~l~----------------------sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~--~l~~L~~L~l 754 (1153)
T PLN03210 702 ---NLK----------------------SLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL--RLENLDELIL 754 (1153)
T ss_pred ---CCC----------------------CCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc--cccccccccc
Confidence 234 4445555544444444444445555555555554332221 1234666666
Q ss_pred CCCc-------CCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEecc
Q 003307 362 SSNF-------LTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLS 434 (832)
Q Consensus 362 s~N~-------l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 434 (832)
.++. +....+..+...++|+.|+|++|...+.+|..++++++|+.|++++|..-+.+|..+ .+++|+.|+|+
T Consensus 755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls 833 (1153)
T PLN03210 755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLS 833 (1153)
T ss_pred cccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECC
Confidence 5532 222223333445789999999999888899999999999999999986555667665 78999999999
Q ss_pred CCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcC-CcCcccCCCCcc--CCCcEEE
Q 003307 435 GNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSN-NKFEGSIPDGLP--NGLKEFN 511 (832)
Q Consensus 435 ~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~g~ip~~~~--~~L~~l~ 511 (832)
+|..-..+|... .+|+.|+|++|.++ .+|..+..+++|+.|+|++ |+++ .+|.... ..|+.++
T Consensus 834 ~c~~L~~~p~~~------------~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~ 899 (1153)
T PLN03210 834 GCSRLRTFPDIS------------TNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVD 899 (1153)
T ss_pred CCCccccccccc------------cccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeee
Confidence 986554554321 14899999999998 6788999999999999999 5565 4665444 6788888
Q ss_pred cCCCc
Q 003307 512 VSFNN 516 (832)
Q Consensus 512 ls~N~ 516 (832)
++++.
T Consensus 900 l~~C~ 904 (1153)
T PLN03210 900 FSDCG 904 (1153)
T ss_pred cCCCc
Confidence 88763
|
syringae 6; Provisional |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-22 Score=228.23 Aligned_cols=265 Identities=26% Similarity=0.270 Sum_probs=152.9
Q ss_pred CCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEEC
Q 003307 113 QSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDL 192 (832)
Q Consensus 113 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 192 (832)
..-..|+|+.|.|+ .+|..+. ++|+.|++++|+|+. +|.. +++|++|+|++|+|+.. |.. .++|+.|+|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLTSL-PVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccCcc-cCc---ccccceeec
Confidence 34556777777776 3455554 367777777777773 4432 46677777777777643 321 346666777
Q ss_pred ccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCCCccccccccEEEccccC
Q 003307 193 SNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQ 272 (832)
Q Consensus 193 s~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~ 272 (832)
++|.++. +|.. .++|+.|++++|+++. +|. ..++|+.|++++|++++. |.+ ..+|+.|++++|+
T Consensus 270 s~N~L~~-Lp~l------p~~L~~L~Ls~N~Lt~-LP~-----~p~~L~~LdLS~N~L~~L-p~l--p~~L~~L~Ls~N~ 333 (788)
T PRK15387 270 FSNPLTH-LPAL------PSGLCKLWIFGNQLTS-LPV-----LPPGLQELSVSDNQLASL-PAL--PSELCKLWAYNNQ 333 (788)
T ss_pred cCCchhh-hhhc------hhhcCEEECcCCcccc-ccc-----cccccceeECCCCccccC-CCC--cccccccccccCc
Confidence 7776652 2211 1455666666666652 221 124566666666666542 211 1245556666666
Q ss_pred CCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhccc
Q 003307 273 LSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNW 352 (832)
Q Consensus 273 l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~ 352 (832)
++ .+|. + ..+|+.|+|++|+|++ +|....+++.|++++|+|+..+. .
T Consensus 334 L~-~LP~-l----p~~Lq~LdLS~N~Ls~-----------------------LP~lp~~L~~L~Ls~N~L~~LP~-l--- 380 (788)
T PRK15387 334 LT-SLPT-L----PSGLQELSVSDNQLAS-----------------------LPTLPSELYKLWAYNNRLTSLPA-L--- 380 (788)
T ss_pred cc-cccc-c----ccccceEecCCCccCC-----------------------CCCCCcccceehhhccccccCcc-c---
Confidence 65 3442 1 1245555555555543 23333344444444444443221 1
Q ss_pred cCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEe
Q 003307 353 GNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLN 432 (832)
Q Consensus 353 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 432 (832)
..+|+.|+|++|.|++ +|.. .++|+.|++++|+|++ +|..+ .+|+.|++++|+|+. +|..+..+++|+.|+
T Consensus 381 ~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 381 PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLTR-LPESLIHLSSETTVN 451 (788)
T ss_pred ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCcccc-cChHHhhccCCCeEE
Confidence 1257777777777774 3432 2567788888888874 55432 467778888888874 577777888888888
Q ss_pred ccCCcccccCCccc
Q 003307 433 LSGNNFSGPLPLQE 446 (832)
Q Consensus 433 Ls~N~l~~~~p~~~ 446 (832)
|++|+|++.++..+
T Consensus 452 Ls~N~Ls~~~~~~L 465 (788)
T PRK15387 452 LEGNPLSERTLQAL 465 (788)
T ss_pred CCCCCCCchHHHHH
Confidence 88888887766554
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-24 Score=216.37 Aligned_cols=278 Identities=16% Similarity=0.142 Sum_probs=185.4
Q ss_pred CCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcC-CCCCCccchhhhcCCCCCEEE
Q 003307 113 QSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRA-NRFGGDIMHLLSQLGSVVHVD 191 (832)
Q Consensus 113 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~l~~l~~L~~L~ 191 (832)
+....++|..|+|+.+.|.+|+.+++|+.|||++|+|+.+-|++|.++.+|..|-+.+ |+|+......|++|..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 5677899999999999999999999999999999999999999999999988877766 999999899999999999999
Q ss_pred CccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccc------------cCC-Ccc
Q 003307 192 LSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVG------------AIP-SFN 258 (832)
Q Consensus 192 Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~------------~~~-~~~ 258 (832)
+.-|++.......+. .+++|..|.+..|.+.... ...|..+..++.+.+..|.+.. ..| +++
T Consensus 147 lNan~i~Cir~~al~---dL~~l~lLslyDn~~q~i~--~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 147 LNANHINCIRQDALR---DLPSLSLLSLYDNKIQSIC--KGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred cChhhhcchhHHHHH---Hhhhcchhcccchhhhhhc--cccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 999999855544443 4588999999999986332 2338888999999999887421 222 445
Q ss_pred ccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecC
Q 003307 259 FVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLS 338 (832)
Q Consensus 259 ~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~ 338 (832)
...-..-..+.++++. .++..-|......+..--.+.....+..|... ...+.+|+.|+|+
T Consensus 222 garc~~p~rl~~~Ri~-q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~c------------------f~~L~~L~~lnls 282 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRIN-QEDARKFLCSLESLPSRLSSEDFPDSICPAKC------------------FKKLPNLRKLNLS 282 (498)
T ss_pred cceecchHHHHHHHhc-ccchhhhhhhHHhHHHhhccccCcCCcChHHH------------------HhhcccceEeccC
Confidence 5555555566666665 23322221111111100111111111111100 1123444455555
Q ss_pred CCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcc
Q 003307 339 NNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHL 414 (832)
Q Consensus 339 ~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 414 (832)
+|+|+++.+..|.....+++|.|..|+|..+-...|.++..|+.|+|.+|+|+..-|..|..+..|.+|+|-.|.+
T Consensus 283 nN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 283 NNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred CCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 5555555444454444666666666666655566666666677777777777666666666666666666666543
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-21 Score=224.49 Aligned_cols=267 Identities=24% Similarity=0.256 Sum_probs=191.6
Q ss_pred CCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCc
Q 003307 90 KMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLR 169 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 169 (832)
..-..|+|++|.++..++.+. ++|+.|++++|+|+. +|. .+++|++|+|++|+|+. +|.. .++|+.|+|+
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls 270 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIF 270 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence 456789999999986444665 489999999999995 453 35889999999999995 5643 4689999999
Q ss_pred CCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCc
Q 003307 170 ANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNH 249 (832)
Q Consensus 170 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 249 (832)
+|.++. +|.. ..+|+.|+|++|+++. +|.. +++|+.|++++|++++ ++.. ..+|+.|++++|+
T Consensus 271 ~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~~------p~~L~~LdLS~N~L~~-Lp~l-----p~~L~~L~Ls~N~ 333 (788)
T PRK15387 271 SNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPVL------PPGLQELSVSDNQLAS-LPAL-----PSELCKLWAYNNQ 333 (788)
T ss_pred CCchhh-hhhc---hhhcCEEECcCCcccc-cccc------ccccceeECCCCcccc-CCCC-----cccccccccccCc
Confidence 999874 3332 3578899999999983 3431 3789999999999975 3321 2468889999999
Q ss_pred ccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCC
Q 003307 250 LVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARV 329 (832)
Q Consensus 250 l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l 329 (832)
+++ +|.+ ..+|+.|+|++|+|+ .+|.. ..+|+.|++++|+|+.. |.. ..+|+.|++++|+|++ +|...
T Consensus 334 L~~-LP~l--p~~Lq~LdLS~N~Ls-~LP~l-----p~~L~~L~Ls~N~L~~L-P~l-~~~L~~LdLs~N~Lt~-LP~l~ 401 (788)
T PRK15387 334 LTS-LPTL--PSGLQELSVSDNQLA-SLPTL-----PSELYKLWAYNNRLTSL-PAL-PSGLKELIVSGNRLTS-LPVLP 401 (788)
T ss_pred ccc-cccc--ccccceEecCCCccC-CCCCC-----CcccceehhhccccccC-ccc-ccccceEEecCCcccC-CCCcc
Confidence 985 4432 257999999999998 56642 24577778888877752 221 2356666666666552 33222
Q ss_pred CCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEc
Q 003307 330 GHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDL 409 (832)
Q Consensus 330 ~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 409 (832)
.+|+.|++++|.|++ +|.. ..+|+.|++++|+|+ .+|..+..+++|+.|+|
T Consensus 402 ------------------------s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 402 ------------------------SELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 452 (788)
T ss_pred ------------------------cCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence 257777777777774 4443 245777888888887 67888888888888888
Q ss_pred cCCcccccCcccccC
Q 003307 410 SLNHLNGFLLPSFFT 424 (832)
Q Consensus 410 s~N~l~~~~~~~~~~ 424 (832)
++|+|++..+..+..
T Consensus 453 s~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 453 EGNPLSERTLQALRE 467 (788)
T ss_pred CCCCCCchHHHHHHH
Confidence 888888877766633
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.8e-20 Score=211.35 Aligned_cols=246 Identities=24% Similarity=0.336 Sum_probs=117.5
Q ss_pred CCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECc
Q 003307 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLS 193 (832)
Q Consensus 114 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls 193 (832)
+...|+++++.++. +|..+. ++|+.|+|++|+|+. +|..+. ++|++|+|++|+|+. +|..+. .+|+.|+|+
T Consensus 179 ~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECc
Confidence 44556666665553 343332 355666666666653 343332 356666666666553 233222 245666666
Q ss_pred cCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCCCccccccccEEEccccCC
Q 003307 194 NNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQL 273 (832)
Q Consensus 194 ~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l 273 (832)
+|+++ .+|..+. ++|+.|++++|+++. +|.. +. ++|+.|++++|++++..+.+. .+|+.|++++|++
T Consensus 250 ~N~L~-~LP~~l~-----s~L~~L~Ls~N~L~~-LP~~--l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~L 316 (754)
T PRK15370 250 INRIT-ELPERLP-----SALQSLDLFHNKISC-LPEN--LP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSL 316 (754)
T ss_pred CCccC-cCChhHh-----CCCCEEECcCCccCc-cccc--cC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCcc
Confidence 66655 3333321 345556666555542 3322 21 355666666666553222221 3456666666666
Q ss_pred CCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhcccc
Q 003307 274 SGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWG 353 (832)
Q Consensus 274 ~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~ 353 (832)
+ .+|..+ .++|+.|++++|.+++. |.....+|+.|++++|+|+ .+|..+.
T Consensus 317 t-~LP~~l----~~sL~~L~Ls~N~Lt~L-P~~l~~sL~~L~Ls~N~L~-~LP~~lp----------------------- 366 (754)
T PRK15370 317 T-ALPETL----PPGLKTLEAGENALTSL-PASLPPELQVLDVSKNQIT-VLPETLP----------------------- 366 (754)
T ss_pred c-cCCccc----cccceeccccCCccccC-ChhhcCcccEEECCCCCCC-cCChhhc-----------------------
Confidence 5 344333 13455555555555542 2111234555555555544 2222111
Q ss_pred CcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCccc----ccCCCCCCCEEEccCCccc
Q 003307 354 NYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPA----VLGTYPELKVIDLSLNHLN 415 (832)
Q Consensus 354 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~ 415 (832)
..|+.|+|++|.|+. +|..+. ..|+.|++++|+|+ .+|. .+..++.+..|++.+|.++
T Consensus 367 ~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 367 PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 135555555555553 232222 23555555555555 2232 2233455666666666665
|
|
| >KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-19 Score=194.01 Aligned_cols=105 Identities=38% Similarity=0.650 Sum_probs=91.7
Q ss_pred cccchhhhcccc-----cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEEC
Q 003307 725 LMFTAEELSHAP-----AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWG 799 (832)
Q Consensus 725 ~~~~~~~l~~~~-----~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~ 799 (832)
+.|+++|+..|| +++||+|+||.||||.+++|..||||++.....+..++|.+|++++++++|||+|+|+|||.+
T Consensus 63 ~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC~e 142 (361)
T KOG1187|consen 63 RSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYCLE 142 (361)
T ss_pred ceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEEec
Confidence 458889998885 578999999999999999999999998865433215679999999999999999999999997
Q ss_pred CCCceEEEEEecCCCCCHHHHHhcCC--Ccccc
Q 003307 800 PKEHEKLVISNYINAQSLAVYLQGKG--LVLWF 830 (832)
Q Consensus 800 ~~~~~~~lv~e~~~~GsL~~~l~~~~--~l~w~ 830 (832)
.+. +.+||||||+||||+++||++. .++|.
T Consensus 143 ~~~-~~~LVYEym~nGsL~d~L~~~~~~~L~W~ 174 (361)
T KOG1187|consen 143 GGE-HRLLVYEYMPNGSLEDHLHGKKGEPLDWE 174 (361)
T ss_pred CCc-eEEEEEEccCCCCHHHHhCCCCCCCCCHH
Confidence 762 3899999999999999999876 89995
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-18 Score=199.10 Aligned_cols=247 Identities=23% Similarity=0.331 Sum_probs=144.3
Q ss_pred CCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCCCcccccccc
Q 003307 185 GSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLR 264 (832)
Q Consensus 185 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~ 264 (832)
.+...|+++++.++ .+|..+. +.|+.|+|++|+++. +|.. + ..+|+.|++++|+++.....+ ..+|+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip-----~~L~~L~Ls~N~Lts-LP~~--l--~~nL~~L~Ls~N~LtsLP~~l--~~~L~ 244 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP-----EQITTLILDNNELKS-LPEN--L--QGNIKTLYANSNQLTSIPATL--PDTIQ 244 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc-----cCCcEEEecCCCCCc-CChh--h--ccCCCEEECCCCccccCChhh--hcccc
Confidence 35678888888887 3454432 568888888888873 3432 2 247788888888777432233 24677
Q ss_pred EEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcC
Q 003307 265 ILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSG 344 (832)
Q Consensus 265 ~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~ 344 (832)
.|+|++|++. .+|..+. .+|+.|++++|+++.. |.....+|+.|++++|+|++ +|..+.
T Consensus 245 ~L~Ls~N~L~-~LP~~l~----s~L~~L~Ls~N~L~~L-P~~l~~sL~~L~Ls~N~Lt~-LP~~lp-------------- 303 (754)
T PRK15370 245 EMELSINRIT-ELPERLP----SALQSLDLFHNKISCL-PENLPEELRYLSVYDNSIRT-LPAHLP-------------- 303 (754)
T ss_pred EEECcCCccC-cCChhHh----CCCCEEECcCCccCcc-ccccCCCCcEEECCCCcccc-Ccccch--------------
Confidence 7788887776 6666552 3567777777776642 32222356666666665552 222111
Q ss_pred cchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccC
Q 003307 345 DLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFT 424 (832)
Q Consensus 345 ~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 424 (832)
.+|+.|++++|.++. +|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+|+. +|..+
T Consensus 304 ---------~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~l-- 365 (754)
T PRK15370 304 ---------SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETL-- 365 (754)
T ss_pred ---------hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhh--
Confidence 145666666666664 23322 2456666666666663 444442 566777777776664 34333
Q ss_pred CCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhh----hcCCCCCEEeCcCCcCc
Q 003307 425 STKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGI----SKFHNLVYLNLSNNKFE 496 (832)
Q Consensus 425 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l----~~l~~L~~L~Ls~N~l~ 496 (832)
.++|+.|+|++|+|+. +|..+.. +|+.|++++|+|+ .+|..+ +.++.+..|+|.+|+|+
T Consensus 366 p~~L~~LdLs~N~Lt~-LP~~l~~-----------sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 366 PPTITTLDVSRNALTN-LPENLPA-----------ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred cCCcCEEECCCCcCCC-CCHhHHH-----------HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 2466777777776663 3433211 2666777777776 334333 33466677777777765
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-18 Score=186.68 Aligned_cols=104 Identities=24% Similarity=0.247 Sum_probs=52.9
Q ss_pred EEcCCCCCccc-CC-CCCCCCCCCEEECCCCCCCcc----CcccccCCCCCCEEEcccccccc------cCCCCCCCCCC
Q 003307 95 VSVSNNQLMGN-IT-DIGSIQSLEFLDLSHNLFHGL----IPSGIVSLKNLMLLNISSNSFEG------TFPSGFGGLGK 162 (832)
Q Consensus 95 L~Ls~n~l~~~-~~-~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~------~~p~~~~~l~~ 162 (832)
|+|.++++++. .. .+..+.+|++|+++++.++.. ++..+...++|++|+++++.+.+ .++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 44444544422 11 344455566666666655322 33344455556666666655542 12234455566
Q ss_pred CCEeeCcCCCCCCccchhhhcCCC---CCEEECccCcCc
Q 003307 163 LKYLDLRANRFGGDIMHLLSQLGS---VVHVDLSNNQFS 198 (832)
Q Consensus 163 L~~L~L~~N~l~~~~~~~l~~l~~---L~~L~Ls~N~l~ 198 (832)
|+.|+|++|.+.+..+..+..+.. |++|++++|+++
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence 666666666665544444444443 566666655554
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.7e-18 Score=182.74 Aligned_cols=58 Identities=24% Similarity=0.239 Sum_probs=31.2
Q ss_pred EEECCCCCCC-ccCcccccCCCCCCEEEccccccccc----CCCCCCCCCCCCEeeCcCCCCC
Q 003307 117 FLDLSHNLFH-GLIPSGIVSLKNLMLLNISSNSFEGT----FPSGFGGLGKLKYLDLRANRFG 174 (832)
Q Consensus 117 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~ 174 (832)
.|+|..+.++ ......|..+.+|+.|++++|.++.. ++..+...++|++|+++++.+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~ 64 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG 64 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC
Confidence 3566666665 33344445555666666666666431 3333445555666666655554
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-18 Score=156.68 Aligned_cols=165 Identities=27% Similarity=0.453 Sum_probs=118.0
Q ss_pred ccccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCC
Q 003307 84 PTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKL 163 (832)
Q Consensus 84 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 163 (832)
+.+.++.+.+.|.||.|+++..+|.++.+.+|+.|++++|+|+ ..|.+++.+++|+.|+++-|++. +.|..|+.++.|
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 4566677888888888888887778888888888888888888 45778888888888888888888 778888888888
Q ss_pred CEeeCcCCCCCC-ccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCE
Q 003307 164 KYLDLRANRFGG-DIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEV 242 (832)
Q Consensus 164 ~~L~L~~N~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 242 (832)
+.|||.+|++.. ..|..|..++.|+.|+|++|.|. .+|+. ++++++|+.
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe----------------------------~lp~d--vg~lt~lqi 154 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE----------------------------ILPPD--VGKLTNLQI 154 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc----------------------------cCChh--hhhhcceeE
Confidence 888888888763 34555555555555555555554 23333 556666666
Q ss_pred EEccCCcccccCCCccccccccEEEccccCCCCCCChhh
Q 003307 243 FDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVAL 281 (832)
Q Consensus 243 L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~ 281 (832)
|.+..|.+-..+.+++.++.|++|.+.+|+++ .+|..+
T Consensus 155 l~lrdndll~lpkeig~lt~lrelhiqgnrl~-vlppel 192 (264)
T KOG0617|consen 155 LSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT-VLPPEL 192 (264)
T ss_pred EeeccCchhhCcHHHHHHHHHHHHhcccceee-ecChhh
Confidence 66666666533336666777777777777776 555554
|
|
| >KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-15 Score=152.98 Aligned_cols=92 Identities=25% Similarity=0.341 Sum_probs=81.6
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||+||+|++. +|..||||.+... .....+....|+++|+.++|||||.|+.+++.++. ++||||||.
T Consensus 15 ~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~--i~lVMEyC~ 92 (429)
T KOG0595|consen 15 SREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDF--IYLVMEYCN 92 (429)
T ss_pred hhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCe--EEEEEEeCC
Confidence 344999999999999984 7899999999654 45556778999999999999999999999999888 999999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
+|+|.++|+.++.+++.
T Consensus 93 gGDLs~yi~~~~~l~e~ 109 (429)
T KOG0595|consen 93 GGDLSDYIRRRGRLPEA 109 (429)
T ss_pred CCCHHHHHHHcCCCCHH
Confidence 99999999999877653
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.6e-17 Score=146.87 Aligned_cols=162 Identities=28% Similarity=0.399 Sum_probs=131.7
Q ss_pred CCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCC
Q 003307 107 TDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGS 186 (832)
Q Consensus 107 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~ 186 (832)
+.+-.+.+++.|.||+|.++ .+|..+..+.+|+.|++++|+|+ .+|..+..+++|++|+++-|++. ..|..|+.++.
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~ 103 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA 103 (264)
T ss_pred ccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence 34556778888999999998 56778999999999999999998 67888999999999999999986 67888888888
Q ss_pred CCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCCCccccccccEE
Q 003307 187 VVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRIL 266 (832)
Q Consensus 187 L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L 266 (832)
|+.|||.+|++... ..|.. |..++.|+.|+|+.|.+.-.+|..+.+++|+.|
T Consensus 104 levldltynnl~e~--------------------------~lpgn--ff~m~tlralyl~dndfe~lp~dvg~lt~lqil 155 (264)
T KOG0617|consen 104 LEVLDLTYNNLNEN--------------------------SLPGN--FFYMTTLRALYLGDNDFEILPPDVGKLTNLQIL 155 (264)
T ss_pred hhhhhccccccccc--------------------------cCCcc--hhHHHHHHHHHhcCCCcccCChhhhhhcceeEE
Confidence 88888888887621 12222 667888999999999998666699999999999
Q ss_pred EccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCc
Q 003307 267 RLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGP 302 (832)
Q Consensus 267 ~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~ 302 (832)
.+..|.+- .+|..+ +.+..|++|.+.+|+++-.
T Consensus 156 ~lrdndll-~lpkei--g~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 156 SLRDNDLL-SLPKEI--GDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred eeccCchh-hCcHHH--HHHHHHHHHhcccceeeec
Confidence 99999997 788888 5666677777777776643
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-14 Score=166.57 Aligned_cols=156 Identities=28% Similarity=0.468 Sum_probs=95.0
Q ss_pred CCCHHHHHHHHHhhhcCCCCCCcccccCccccCCCCCCC-C--CCCCccccCCCcEEEEEeCCCCCccccCcccccCCCC
Q 003307 15 ALGQSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGC-P--RNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKM 91 (832)
Q Consensus 15 ~~~~~~~~~l~~~k~~~~~~~~~~~l~~w~~~~~~~~~c-~--~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~ 91 (832)
...+.|..||+++|+.+. ++. ..+|.. ++| + +.|.||.|..... . ....
T Consensus 368 ~t~~~~~~aL~~~k~~~~-~~~---~~~W~g-----~~C~p~~~~w~Gv~C~~~~~----------~---------~~~~ 419 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLG-LPL---RFGWNG-----DPCVPQQHPWSGADCQFDST----------K---------GKWF 419 (623)
T ss_pred ccCchHHHHHHHHHHhcC-Ccc---cCCCCC-----CCCCCcccccccceeeccCC----------C---------CceE
Confidence 345679999999999983 442 247863 344 2 4799999952100 0 0012
Q ss_pred CCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcC
Q 003307 92 LCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRA 170 (832)
Q Consensus 92 L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 170 (832)
++.|+|++|.+.|.+| .++.+++|+.|+|++|.|+|.+|..++.+++|+.|+|++|++++.+|+.++++++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 3445555555555555 566666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCCccchhhhcC-CCCCEEECccCcCc
Q 003307 171 NRFGGDIMHLLSQL-GSVVHVDLSNNQFS 198 (832)
Q Consensus 171 N~l~~~~~~~l~~l-~~L~~L~Ls~N~l~ 198 (832)
|++++.+|..+..+ .++..+++.+|...
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccc
Confidence 66666666665543 34556666666543
|
|
| >KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-13 Score=145.83 Aligned_cols=87 Identities=28% Similarity=0.451 Sum_probs=79.1
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|.||.|..|+...+..||||.++... ...+++|.+|+++|++++|||||+|+|.|...+. ..+|+|||++|
T Consensus 543 ~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DeP--icmI~EYmEnG 620 (807)
T KOG1094|consen 543 KEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDP--LCMITEYMENG 620 (807)
T ss_pred hhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCc--hHHHHHHHhcC
Confidence 67899999999999999878999999997653 4456899999999999999999999999999888 99999999999
Q ss_pred CHHHHHhcCC
Q 003307 816 SLAVYLQGKG 825 (832)
Q Consensus 816 sL~~~l~~~~ 825 (832)
+|.++|.++.
T Consensus 621 DLnqFl~ahe 630 (807)
T KOG1094|consen 621 DLNQFLSAHE 630 (807)
T ss_pred cHHHHHHhcc
Confidence 9999997663
|
|
| >KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-13 Score=147.51 Aligned_cols=92 Identities=30% Similarity=0.487 Sum_probs=78.7
Q ss_pred cCeeeeccCceEEEEEECCCCE-EEEEEeccCCh--hhHHHHHHHHHHHhcCCCCcceeeeeEEECCC-CceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSI-LAVKRLREGIA--KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK-EHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~-vAvK~l~~~~~--~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~-~~~~~lv~e~~ 812 (832)
...||+|+||+||+|.+. |+. ||||++..... ...++|.+|+.+|.+++|||||+++|+|..+. . ..+|+|||
T Consensus 46 ~~~iG~G~~g~V~~~~~~-g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~--~~iVtEy~ 122 (362)
T KOG0192|consen 46 EEVLGSGSFGTVYKGKWR-GTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGS--LCIVTEYM 122 (362)
T ss_pred hhhcccCCceeEEEEEeC-CceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCc--eEEEEEeC
Confidence 456999999999999996 555 99999964322 22568999999999999999999999999877 5 89999999
Q ss_pred CCCCHHHHHhc--CCCccccc
Q 003307 813 NAQSLAVYLQG--KGLVLWFY 831 (832)
Q Consensus 813 ~~GsL~~~l~~--~~~l~w~~ 831 (832)
++|+|.++|++ ++.++|++
T Consensus 123 ~~GsL~~~l~~~~~~~l~~~~ 143 (362)
T KOG0192|consen 123 PGGSLSVLLHKKRKRKLPLKV 143 (362)
T ss_pred CCCcHHHHHhhcccCCCCHHH
Confidence 99999999998 57788764
|
|
| >KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-13 Score=153.97 Aligned_cols=95 Identities=22% Similarity=0.476 Sum_probs=80.7
Q ss_pred cchhhhcccccCeeeeccCceEEEEEE------CCCCEEEEEEeccCChh-hHHHHHHHHHHHhcCCCCcceeeeeEEEC
Q 003307 727 FTAEELSHAPAEVIGRSCHGTLYKATL------DSGSILAVKRLREGIAK-GKKEFAREVKKLGNIKHPNLVSLQGYYWG 799 (832)
Q Consensus 727 ~~~~~l~~~~~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~~~-~~~~f~~e~~~l~~~~H~niv~l~g~~~~ 799 (832)
|+..++.. ...||+|+||+||+|+. .+.+.||||.+++.... ..++|.+|++.++.++|||||+|+|.|..
T Consensus 483 i~r~~i~~--~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~ 560 (774)
T KOG1026|consen 483 IPRSDIVF--KEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCRE 560 (774)
T ss_pred echhheee--hhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEcc
Confidence 44444444 56799999999999985 23468999999876544 78899999999999999999999999999
Q ss_pred CCCceEEEEEecCCCCCHHHHHhcCC
Q 003307 800 PKEHEKLVISNYINAQSLAVYLQGKG 825 (832)
Q Consensus 800 ~~~~~~~lv~e~~~~GsL~~~l~~~~ 825 (832)
.+. .++|+|||..|+|.++|+-..
T Consensus 561 ~~P--~~MvFEYm~~GDL~eFLra~s 584 (774)
T KOG1026|consen 561 GDP--LCMVFEYMDHGDLHEFLRARS 584 (774)
T ss_pred CCe--eEEEEEecccccHHHHHHhhC
Confidence 988 999999999999999997544
|
|
| >KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.4e-13 Score=147.10 Aligned_cols=92 Identities=27% Similarity=0.519 Sum_probs=80.5
Q ss_pred cCeeeeccCceEEEEEEC----CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD----SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
+.+||.|.||.||+|+++ ....||||.++.+ ....+++|..|..+|++..||||++|.|.....+. .+||.||
T Consensus 634 e~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~P--vMIiTEy 711 (996)
T KOG0196|consen 634 EKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKP--VMIITEY 711 (996)
T ss_pred EEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCce--eEEEhhh
Confidence 679999999999999983 3467999999876 34557899999999999999999999999998888 9999999
Q ss_pred CCCCCHHHHHhcC-CCcccc
Q 003307 812 INAQSLAVYLQGK-GLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~-~~l~w~ 830 (832)
|+||+|+.+|+.+ +.|+|-
T Consensus 712 MENGsLDsFLR~~DGqftvi 731 (996)
T KOG0196|consen 712 MENGSLDSFLRQNDGQFTVI 731 (996)
T ss_pred hhCCcHHHHHhhcCCceEee
Confidence 9999999999854 456664
|
|
| >KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-12 Score=132.13 Aligned_cols=102 Identities=25% Similarity=0.347 Sum_probs=86.6
Q ss_pred cchhhhcccccCeeeeccCceEEEEEE-CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCce
Q 003307 727 FTAEELSHAPAEVIGRSCHGTLYKATL-DSGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHE 804 (832)
Q Consensus 727 ~~~~~l~~~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~ 804 (832)
++..||.+ .+.||+|..|+|||+.+ ++++.+|+|.+... .....++..+|++++.+.+||+||+++|.|..... +
T Consensus 76 i~~~dle~--~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~-~ 152 (364)
T KOG0581|consen 76 ISLSDLER--LGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGE-E 152 (364)
T ss_pred cCHHHhhh--hhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCc-e
Confidence 55667766 68899999999999998 48999999999543 33456889999999999999999999999987773 4
Q ss_pred EEEEEecCCCCCHHHHHhcCCCccccc
Q 003307 805 KLVISNYINAQSLAVYLQGKGLVLWFY 831 (832)
Q Consensus 805 ~~lv~e~~~~GsL~~~l~~~~~l~w~~ 831 (832)
+.++||||.+|||++++.+.+++++++
T Consensus 153 isI~mEYMDgGSLd~~~k~~g~i~E~~ 179 (364)
T KOG0581|consen 153 ISICMEYMDGGSLDDILKRVGRIPEPV 179 (364)
T ss_pred EEeehhhcCCCCHHHHHhhcCCCCHHH
Confidence 999999999999999998877766643
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.5e-12 Score=148.01 Aligned_cols=104 Identities=30% Similarity=0.465 Sum_probs=78.2
Q ss_pred CCCEEEccCCcccccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcC
Q 003307 403 ELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKF 482 (832)
Q Consensus 403 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l 482 (832)
.++.|+|++|.++|.+|..+..+++|+.|+|++|+++|.+|..+..+.. |+.|||++|+++|.+|..++++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~---------L~~LdLs~N~lsg~iP~~l~~L 489 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS---------LEVLDLSYNSFNGSIPESLGQL 489 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCC---------CCEEECCCCCCCCCCchHHhcC
Confidence 3677888888888888888888888888888888888887766555443 7888888888888888888888
Q ss_pred CCCCEEeCcCCcCcccCCCCccC---CCcEEEcCCC
Q 003307 483 HNLVYLNLSNNKFEGSIPDGLPN---GLKEFNVSFN 515 (832)
Q Consensus 483 ~~L~~L~Ls~N~l~g~ip~~~~~---~L~~l~ls~N 515 (832)
++|+.|+|++|+++|.+|..+.. .+..+++++|
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 88888888888888888876542 2334444444
|
|
| >KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-12 Score=138.83 Aligned_cols=84 Identities=24% Similarity=0.436 Sum_probs=76.0
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
...||+|-||.||.|.+.....||||.++.... ..+.|.+|+++|.+++|+|||+++|.|..++. ++||+|||++||
T Consensus 211 ~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m-~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~p--iyIVtE~m~~Gs 287 (468)
T KOG0197|consen 211 IRELGSGQFGEVWLGKWNGSTKVAVKTIKEGSM-SPEAFLREAQIMKKLRHEKLVKLYGVCTKQEP--IYIVTEYMPKGS 287 (468)
T ss_pred HHHhcCCccceEEEEEEcCCCcccceEEecccc-ChhHHHHHHHHHHhCcccCeEEEEEEEecCCc--eEEEEEecccCc
Confidence 567999999999999997666999999976533 45789999999999999999999999998887 999999999999
Q ss_pred HHHHHhc
Q 003307 817 LAVYLQG 823 (832)
Q Consensus 817 L~~~l~~ 823 (832)
|.++|+.
T Consensus 288 Ll~yLr~ 294 (468)
T KOG0197|consen 288 LLDYLRT 294 (468)
T ss_pred HHHHhhh
Confidence 9999986
|
|
| >KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3e-12 Score=138.88 Aligned_cols=91 Identities=24% Similarity=0.396 Sum_probs=77.9
Q ss_pred cCeeeeccCceEEEEEEC--CC--CE-EEEEEecc---CChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD--SG--SI-LAVKRLRE---GIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~--~g--~~-vAvK~l~~---~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv 808 (832)
...||+|+||.||+|++. ++ .. ||||..+. .......+|.+|.++|++++|||||+++|++...+. .++|
T Consensus 162 ~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~P--l~iv 239 (474)
T KOG0194|consen 162 GKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEP--LMLV 239 (474)
T ss_pred cceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCc--cEEE
Confidence 578999999999999973 33 23 89998864 335567899999999999999999999999999888 9999
Q ss_pred EecCCCCCHHHHHhcCCC-ccc
Q 003307 809 SNYINAQSLAVYLQGKGL-VLW 829 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~~-l~w 829 (832)
||+|+||+|.++|+..+. +++
T Consensus 240 mEl~~gGsL~~~L~k~~~~v~~ 261 (474)
T KOG0194|consen 240 MELCNGGSLDDYLKKNKKSLPT 261 (474)
T ss_pred EEecCCCcHHHHHHhCCCCCCH
Confidence 999999999999997653 443
|
|
| >KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.2e-12 Score=137.84 Aligned_cols=92 Identities=20% Similarity=0.328 Sum_probs=82.7
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
+.+||+|||+.||+++. .+|+.||+|++.+. .....+...+||++.+.++|||||++++|+.+.+. +|+|.|+|
T Consensus 23 g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~n--VYivLELC 100 (592)
T KOG0575|consen 23 GRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNN--VYIVLELC 100 (592)
T ss_pred eeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCc--eEEEEEec
Confidence 78999999999999997 89999999999653 23346778999999999999999999999999888 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.+++.+++.++++
T Consensus 101 ~~~sL~el~Krrk~ltEp 118 (592)
T KOG0575|consen 101 HRGSLMELLKRRKPLTEP 118 (592)
T ss_pred CCccHHHHHHhcCCCCcH
Confidence 999999999988888764
|
|
| >KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.9e-13 Score=125.75 Aligned_cols=94 Identities=26% Similarity=0.415 Sum_probs=81.2
Q ss_pred ccchhhhcccccCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCC
Q 003307 726 MFTAEELSHAPAEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK 801 (832)
Q Consensus 726 ~~~~~~l~~~~~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~ 801 (832)
.++++++.- +..+|+|.||.||.|+.+ ++-.||+|++.+.. .+...++.+|+++-+.++||||.+++||+.+..
T Consensus 18 ~~~l~dfei--gr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~ 95 (281)
T KOG0580|consen 18 TWTLDDFEI--GRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSK 95 (281)
T ss_pred ccchhhccc--cccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccc
Confidence 455565555 889999999999999974 78899999995432 234678999999999999999999999999888
Q ss_pred CceEEEEEecCCCCCHHHHHhc
Q 003307 802 EHEKLVISNYINAQSLAVYLQG 823 (832)
Q Consensus 802 ~~~~~lv~e~~~~GsL~~~l~~ 823 (832)
. .||++||.++|+++..|++
T Consensus 96 r--iyLilEya~~gel~k~L~~ 115 (281)
T KOG0580|consen 96 R--IYLILEYAPRGELYKDLQE 115 (281)
T ss_pred e--eEEEEEecCCchHHHHHHh
Confidence 8 9999999999999999994
|
|
| >KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-12 Score=130.59 Aligned_cols=91 Identities=16% Similarity=0.340 Sum_probs=76.7
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCCh-h------hHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIA-K------GKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~-~------~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv 808 (832)
...+|+|+||.|-+|.- .+|+.||||.+..... . ......+|+++|.+++|||||++.+++..++. .|+|
T Consensus 177 ~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds--~YmV 254 (475)
T KOG0615|consen 177 SKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDS--SYMV 254 (475)
T ss_pred eeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCc--eEEE
Confidence 56799999999999986 5999999999954311 1 12235699999999999999999999998888 9999
Q ss_pred EecCCCCCHHHHHhcCCCccc
Q 003307 809 SNYINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~~l~w 829 (832)
+|||++|+|++.+-..+.+.+
T Consensus 255 lE~v~GGeLfd~vv~nk~l~e 275 (475)
T KOG0615|consen 255 LEYVEGGELFDKVVANKYLRE 275 (475)
T ss_pred EEEecCccHHHHHHhcccccc
Confidence 999999999999987776554
|
|
| >PHA02988 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-11 Score=129.89 Aligned_cols=104 Identities=13% Similarity=0.197 Sum_probs=85.7
Q ss_pred ccchhhhcccccCeeeeccCceEEEEEECCCCEEEEEEeccCChhh---HHHHHHHHHHHhcCCCCcceeeeeEEEC--C
Q 003307 726 MFTAEELSHAPAEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKG---KKEFAREVKKLGNIKHPNLVSLQGYYWG--P 800 (832)
Q Consensus 726 ~~~~~~l~~~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~---~~~f~~e~~~l~~~~H~niv~l~g~~~~--~ 800 (832)
.++.+|+...+...||+|++|.||+|.+ +|+.||||+++...... .+.|.+|++++.+++|||||+++|+|.+ .
T Consensus 14 ~i~~~~i~~~~~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~ 92 (283)
T PHA02988 14 CIESDDIDKYTSVLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVD 92 (283)
T ss_pred ecCHHHcCCCCCeEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEeccc
Confidence 4667777765568899999999999998 68999999986432222 4678899999999999999999999976 3
Q ss_pred CCceEEEEEecCCCCCHHHHHhcCCCcccc
Q 003307 801 KEHEKLVISNYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 801 ~~~~~~lv~e~~~~GsL~~~l~~~~~l~w~ 830 (832)
+....++|||||++|+|.++++..+.++|.
T Consensus 93 ~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~ 122 (283)
T PHA02988 93 DLPRLSLILEYCTRGYLREVLDKEKDLSFK 122 (283)
T ss_pred CCCceEEEEEeCCCCcHHHHHhhCCCCChh
Confidence 222388999999999999999988777764
|
|
| >KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.2e-12 Score=132.95 Aligned_cols=85 Identities=28% Similarity=0.405 Sum_probs=77.0
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.+|-|.||.||.|+++ ....||||.+++... ..++|.+|..+|..++|||+|+|+|.|..... .|||.|||.+|
T Consensus 272 khKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtM-eveEFLkEAAvMKeikHpNLVqLLGVCT~EpP--FYIiTEfM~yG 348 (1157)
T KOG4278|consen 272 KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPP--FYIITEFMCYG 348 (1157)
T ss_pred eeccCCCcccceeeeeeeccceeeehhhhhhcch-hHHHHHHHHHHHHhhcCccHHHHhhhhccCCC--eEEEEecccCc
Confidence 578999999999999985 678999999987644 36899999999999999999999999998888 99999999999
Q ss_pred CHHHHHhcC
Q 003307 816 SLAVYLQGK 824 (832)
Q Consensus 816 sL~~~l~~~ 824 (832)
+|.|+|++-
T Consensus 349 NLLdYLRec 357 (1157)
T KOG4278|consen 349 NLLDYLREC 357 (1157)
T ss_pred cHHHHHHHh
Confidence 999999863
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.6e-13 Score=141.55 Aligned_cols=214 Identities=27% Similarity=0.411 Sum_probs=104.8
Q ss_pred CCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEEC
Q 003307 113 QSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDL 192 (832)
Q Consensus 113 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 192 (832)
..-...||+.|++. .+|..+..+..|+.|.|++|.|. .+|..+.++..|++|||+.|+++ ..|..+..| -|+.|-+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEE
Confidence 33344444445444 33444444444455555555544 34444555555555555555544 223333333 2444445
Q ss_pred ccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCCCccccccccEEEccccC
Q 003307 193 SNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQ 272 (832)
Q Consensus 193 s~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~ 272 (832)
++|+++ .+|..++ .+..|..|+.+.|.+. .+++. +.++.+|+.|.+..|++...++++. .-.|..||++.|+
T Consensus 151 sNNkl~-~lp~~ig---~~~tl~~ld~s~nei~-slpsq--l~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNk 222 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIG---LLPTLAHLDVSKNEIQ-SLPSQ--LGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNK 222 (722)
T ss_pred ecCccc-cCCcccc---cchhHHHhhhhhhhhh-hchHH--hhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCc
Confidence 555544 3344444 1244455555555543 23333 5555666666666666654444444 2236666666666
Q ss_pred CCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCC----CCCEEEecCCeecc--------cCCCCCCCCCEEecCCC
Q 003307 273 LSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSA----TLKKVNLSSNKLSG--------SLPARVGHCTIVDLSNN 340 (832)
Q Consensus 273 l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~----~L~~L~L~~N~l~~--------~~p~~l~~l~~L~L~~N 340 (832)
++ .+|..+ ..+..|++|-|.+|.+..+...+... -.++|+..-++ +| .-|..+.++.+.+.++|
T Consensus 223 is-~iPv~f--r~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q-~~~a~~~~t~~RP~~~~~c~~ed~s~~ 298 (722)
T KOG0532|consen 223 IS-YLPVDF--RKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ-SGGALDLYTTLRPRHFSSCHVEDASGN 298 (722)
T ss_pred ee-ecchhh--hhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc-ccCCcccccccCCcccCCcchhhhccC
Confidence 65 566665 45666666666666666544433222 24455555543 11 12444555655555555
Q ss_pred CC
Q 003307 341 RL 342 (832)
Q Consensus 341 ~l 342 (832)
+-
T Consensus 299 ~~ 300 (722)
T KOG0532|consen 299 QY 300 (722)
T ss_pred cc
Confidence 44
|
|
| >KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.8e-11 Score=127.36 Aligned_cols=87 Identities=26% Similarity=0.383 Sum_probs=72.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|.||.||||+. .+|+.||+|+++-.. .+...-..+||.+|+++.|||||+|.+...+.....+|||+|||+
T Consensus 122 i~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYlVFeYMd 201 (560)
T KOG0600|consen 122 IEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYLVFEYMD 201 (560)
T ss_pred HHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEEEEeccc
Confidence 35699999999999985 699999999985433 334566789999999999999999999988763334999999999
Q ss_pred CCCHHHHHhcC
Q 003307 814 AQSLAVYLQGK 824 (832)
Q Consensus 814 ~GsL~~~l~~~ 824 (832)
. +|..++...
T Consensus 202 h-DL~GLl~~p 211 (560)
T KOG0600|consen 202 H-DLSGLLSSP 211 (560)
T ss_pred c-hhhhhhcCC
Confidence 7 888887754
|
|
| >KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.4e-11 Score=139.33 Aligned_cols=87 Identities=28% Similarity=0.505 Sum_probs=76.5
Q ss_pred cCeeeeccCceEEEEEEC--CCC----EEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD--SGS----ILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~--~g~----~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
...||+|+||.||+|.+. +|. .||||.+++. ..+...+|.+|..+|++++|||||+++|.|.+... .+|++
T Consensus 697 ~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~--~~i~l 774 (1025)
T KOG1095|consen 697 LRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGP--PLILL 774 (1025)
T ss_pred eeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCC--cEEEe
Confidence 568999999999999973 443 4999999765 45567889999999999999999999999998777 99999
Q ss_pred ecCCCCCHHHHHhcCC
Q 003307 810 NYINAQSLAVYLQGKG 825 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~ 825 (832)
|||++|+|..+|++.+
T Consensus 775 eyM~gGDL~sflr~~r 790 (1025)
T KOG1095|consen 775 EYMEGGDLLSFLRESR 790 (1025)
T ss_pred hhcccCcHHHHHHhcc
Confidence 9999999999999874
|
|
| >KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.7e-11 Score=121.76 Aligned_cols=92 Identities=27% Similarity=0.369 Sum_probs=80.9
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCCh---hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIA---KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
-.+||+|+||+||.++. ++|+.+|+|++++... ...+...+|..+|.+++||.||+++..+.+.+. .|+|.||+
T Consensus 30 lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~k--LylVld~~ 107 (357)
T KOG0598|consen 30 LKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEK--LYLVLDYL 107 (357)
T ss_pred eeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCe--EEEEEecc
Confidence 67899999999999986 5899999999965432 234567899999999999999999999988887 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
.||+|+.+|.+.+.+++.
T Consensus 108 ~GGeLf~hL~~eg~F~E~ 125 (357)
T KOG0598|consen 108 NGGELFYHLQREGRFSED 125 (357)
T ss_pred CCccHHHHHHhcCCcchh
Confidence 999999999999888765
|
|
| >KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-11 Score=130.41 Aligned_cols=91 Identities=25% Similarity=0.376 Sum_probs=79.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
-+.||+|+||.||||+-+ +++.||+|.+.+. .....+...+|++++++++|||||.++.+|.+..+ .++|.||+.
T Consensus 7 ~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~--~~vVte~a~ 84 (808)
T KOG0597|consen 7 YEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAH--LWVVTEYAV 84 (808)
T ss_pred HHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccce--EEEEehhhh
Confidence 356999999999999864 7899999998543 23345678999999999999999999999998888 999999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
+ +|+.+|...+.++++
T Consensus 85 g-~L~~il~~d~~lpEe 100 (808)
T KOG0597|consen 85 G-DLFTILEQDGKLPEE 100 (808)
T ss_pred h-hHHHHHHhccCCCHH
Confidence 7 999999998888764
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3e-11 Score=134.23 Aligned_cols=102 Identities=37% Similarity=0.526 Sum_probs=56.6
Q ss_pred EEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCC-CCCEEEcccccccccCCCCCCCCCCCCEeeCcCCC
Q 003307 94 NVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLK-NLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANR 172 (832)
Q Consensus 94 ~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 172 (832)
.+++..|.+...+..+..++.++.|++.+|.++.+ |.....+. +|+.|++++|++. .+|..++.+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 45555555544444444556666666666666633 33344443 6666666666666 344555666666666666666
Q ss_pred CCCccchhhhcCCCCCEEECccCcCc
Q 003307 173 FGGDIMHLLSQLGSVVHVDLSNNQFS 198 (832)
Q Consensus 173 l~~~~~~~l~~l~~L~~L~Ls~N~l~ 198 (832)
++ .++.....+++|+.|++++|+++
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~ 199 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS 199 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc
Confidence 65 23333335555666666666655
|
|
| >KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=8e-11 Score=125.17 Aligned_cols=93 Identities=22% Similarity=0.278 Sum_probs=80.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCCh---hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIA---KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
-.+||+|+||.||.|+- .+|..+|+|++++... ...+-..+|-.+|....+|.||+|+..+.+.+. .||||||+
T Consensus 146 Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~--LYLiMEyl 223 (550)
T KOG0605|consen 146 LKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEY--LYLIMEYL 223 (550)
T ss_pred heeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCe--eEEEEEec
Confidence 46799999999999986 4899999999976432 223447889999999999999999999988888 99999999
Q ss_pred CCCCHHHHHhcCCCccccc
Q 003307 813 NAQSLAVYLQGKGLVLWFY 831 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~~ 831 (832)
|||++..+|...+.|+..+
T Consensus 224 PGGD~mTLL~~~~~L~e~~ 242 (550)
T KOG0605|consen 224 PGGDMMTLLMRKDTLTEDW 242 (550)
T ss_pred CCccHHHHHHhcCcCchHH
Confidence 9999999999999887643
|
|
| >KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-11 Score=124.91 Aligned_cols=92 Identities=20% Similarity=0.390 Sum_probs=80.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHH---HHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKK---EFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~---~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.+|+|.||+|-+|.. ..|+.||||.+++....+.+ -..+||++|+.++||||+.++..|...+. +.|||||.
T Consensus 58 ~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdK--IvivMEYa 135 (668)
T KOG0611|consen 58 TETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDK--IVIVMEYA 135 (668)
T ss_pred HHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCce--EEEEEEec
Confidence 45799999999999986 58999999999765443333 46799999999999999999999998888 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
.+|.|+|++.+++.|+++
T Consensus 136 S~GeLYDYiSer~~LsEr 153 (668)
T KOG0611|consen 136 SGGELYDYISERGSLSER 153 (668)
T ss_pred CCccHHHHHHHhccccHH
Confidence 999999999999888763
|
|
| >PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.7e-11 Score=122.51 Aligned_cols=92 Identities=27% Similarity=0.451 Sum_probs=75.4
Q ss_pred cCeeeeccCceEEEEEEC-----CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD-----SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-----~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.+.||+|.||.||+|++. .+..||||.++.. .....++|.+|++.+.+++||||++++|+|...+. .++|||
T Consensus 4 ~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~--~~lv~e 81 (259)
T PF07714_consen 4 IKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEP--LFLVME 81 (259)
T ss_dssp EEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSS--EEEEEE
T ss_pred eeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeeccccccccccccccccccccccccc--cccccc
Confidence 457999999999999975 3578999999653 33346889999999999999999999999997666 999999
Q ss_pred cCCCCCHHHHHhcC--CCcccc
Q 003307 811 YINAQSLAVYLQGK--GLVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~--~~l~w~ 830 (832)
||++|+|.++|+.. ..++|.
T Consensus 82 ~~~~g~L~~~L~~~~~~~~~~~ 103 (259)
T PF07714_consen 82 YCPGGSLDDYLKSKNKEPLSEQ 103 (259)
T ss_dssp --TTEBHHHHHHHTCTTTSBHH
T ss_pred cccccccccccccccccccccc
Confidence 99999999999987 556553
|
Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A .... |
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.3e-11 Score=131.65 Aligned_cols=212 Identities=29% Similarity=0.349 Sum_probs=153.7
Q ss_pred CCCccccCCCcEE---EEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCCCCCCCC-CCCEEECCCCCCCccCcc
Q 003307 56 NWFGITCTNGYVT---SIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQ-SLEFLDLSHNLFHGLIPS 131 (832)
Q Consensus 56 ~w~gv~C~~~~v~---~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~ 131 (832)
.+.+..+...... .+++..+.+.... ..+..++.++.|++.+|.++...+....+. +|+.|++++|.+. .+|.
T Consensus 81 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~ 157 (394)
T COG4886 81 SSLDGSENLLNLLPLPSLDLNLNRLRSNI--SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPS 157 (394)
T ss_pred ccccccccccCCCCCceeeccccccccCc--hhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhh
Confidence 3444444433333 4666666654433 456777899999999999998777777775 9999999999998 4456
Q ss_pred cccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCC
Q 003307 132 GIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFI 211 (832)
Q Consensus 132 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l 211 (832)
.+..+++|+.|++++|+++ .+|.....++.|+.|++++|+++ .+|.....+..|++|++++|.+. ..+.. +..+
T Consensus 158 ~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~---~~~~ 231 (394)
T COG4886 158 PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSS---LSNL 231 (394)
T ss_pred hhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchh---hhhc
Confidence 7899999999999999999 56666668999999999999998 45555566677999999999533 12222 3344
Q ss_pred CCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCCCccccccccEEEccccCCCCCCChh
Q 003307 212 SSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVA 280 (832)
Q Consensus 212 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 280 (832)
.++..+.+.+|++... +.. +..+.+++.|++++|.++.... +..+.+++.|++++|.+....|..
T Consensus 232 ~~l~~l~l~~n~~~~~-~~~--~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 232 KNLSGLELSNNKLEDL-PES--IGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccccccccCCceeeec-cch--hccccccceecccccccccccc-ccccCccCEEeccCccccccchhh
Confidence 6677777778877532 222 5667778888888888774444 667777778888877777555543
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.4e-11 Score=113.66 Aligned_cols=87 Identities=30% Similarity=0.371 Sum_probs=26.1
Q ss_pred CCCCCCCCCEEECCCCCCCccCccccc-CCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCC
Q 003307 108 DIGSIQSLEFLDLSHNLFHGLIPSGIV-SLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGS 186 (832)
Q Consensus 108 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~ 186 (832)
.+.++..+++|+|.+|.|+.+ +.++ .+.+|+.|+|++|.|+.. +.+..+++|++|++++|+|+...+.....+++
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPN 89 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT
T ss_pred ccccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCc
Confidence 455566788888888888754 2455 477888888888888854 35778888888888888887654333346888
Q ss_pred CCEEECccCcCc
Q 003307 187 VVHVDLSNNQFS 198 (832)
Q Consensus 187 L~~L~Ls~N~l~ 198 (832)
|++|+|++|++.
T Consensus 90 L~~L~L~~N~I~ 101 (175)
T PF14580_consen 90 LQELYLSNNKIS 101 (175)
T ss_dssp --EEE-TTS---
T ss_pred CCEEECcCCcCC
Confidence 888888888886
|
|
| >KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-10 Score=120.39 Aligned_cols=88 Identities=30% Similarity=0.493 Sum_probs=71.1
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHh--cCCCCcceeeeeEEECCC--CceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLG--NIKHPNLVSLQGYYWGPK--EHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~--~~~H~niv~l~g~~~~~~--~~~~~lv~e~~ 812 (832)
.++||+|+||.||||.+. ++.||||++.. +..+.|.+|-++.+ .++|+||++++++-.... ..+..||+||-
T Consensus 215 ~eli~~Grfg~V~KaqL~-~~~VAVKifp~---~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLVt~fh 290 (534)
T KOG3653|consen 215 LELIGRGRFGCVWKAQLD-NRLVAVKIFPE---QEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLVTEFH 290 (534)
T ss_pred HHHhhcCccceeehhhcc-CceeEEEecCH---HHHHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEEeeec
Confidence 467999999999999994 69999999953 34567888887766 569999999999865444 12489999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|||.+||... .++|
T Consensus 291 ~kGsL~dyL~~n-tisw 306 (534)
T KOG3653|consen 291 PKGSLCDYLKAN-TISW 306 (534)
T ss_pred cCCcHHHHHHhc-cccH
Confidence 999999999864 3555
|
|
| >cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10 | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-10 Score=119.51 Aligned_cols=92 Identities=24% Similarity=0.455 Sum_probs=77.4
Q ss_pred cCeeeeccCceEEEEEEC----CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD----SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|+||.||+|.+. .+..||+|.++... ....+.|.+|+.++.+++||||++++|++...+. .++||||
T Consensus 10 ~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~ 87 (266)
T cd05064 10 ERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNT--MMIVTEY 87 (266)
T ss_pred eeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCC--cEEEEEe
Confidence 678999999999999862 45789999986542 3335679999999999999999999999988777 9999999
Q ss_pred CCCCCHHHHHhcC-CCcccc
Q 003307 812 INAQSLAVYLQGK-GLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~-~~l~w~ 830 (832)
+++|+|.+++... ..++|.
T Consensus 88 ~~~~~L~~~l~~~~~~l~~~ 107 (266)
T cd05064 88 MSNGALDSFLRKHEGQLVAG 107 (266)
T ss_pred CCCCcHHHHHHhCCCCCCHH
Confidence 9999999999864 456654
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor |
| >KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.4e-11 Score=124.81 Aligned_cols=84 Identities=20% Similarity=0.358 Sum_probs=69.8
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHh--cCCCCcceeeeeEEECCCCc--eEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLG--NIKHPNLVSLQGYYWGPKEH--EKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~--~~~H~niv~l~g~~~~~~~~--~~~lv~e~~ 812 (832)
.+.||+|.||.||+|.++ |+.||||++... +++.+.+|-++.. .+||+||..+++.-...... +.+||.||-
T Consensus 216 ~e~IGkGRyGEVwrG~wr-Ge~VAVKiF~sr---dE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwLvTdYH 291 (513)
T KOG2052|consen 216 QEIIGKGRFGEVWRGRWR-GEDVAVKIFSSR---DERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLWLVTDYH 291 (513)
T ss_pred EEEecCccccceeecccc-CCceEEEEeccc---chhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEEEeeecc
Confidence 578999999999999995 899999999533 3567888888876 45999999999886544422 589999999
Q ss_pred CCCCHHHHHhcC
Q 003307 813 NAQSLAVYLQGK 824 (832)
Q Consensus 813 ~~GsL~~~l~~~ 824 (832)
++|||+|+|.+.
T Consensus 292 e~GSL~DyL~r~ 303 (513)
T KOG2052|consen 292 EHGSLYDYLNRN 303 (513)
T ss_pred cCCcHHHHHhhc
Confidence 999999999863
|
|
| >KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.7e-11 Score=132.68 Aligned_cols=86 Identities=26% Similarity=0.396 Sum_probs=74.3
Q ss_pred cCeeeeccCceEEEEEE-CCCC----EEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGS----ILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~----~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
..+||+|+||+||||.+ +.|+ +||+|++... ..+...+|.+|+-+|++++|||+++|+|+|..+. ..||.+
T Consensus 701 ~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~---~qlvtq 777 (1177)
T KOG1025|consen 701 DKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLST---LQLVTQ 777 (1177)
T ss_pred hceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch---HHHHHH
Confidence 78899999999999986 5554 6899988544 3445688999999999999999999999998655 789999
Q ss_pred cCCCCCHHHHHhcCC
Q 003307 811 YINAQSLAVYLQGKG 825 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~ 825 (832)
|||.|+|.|+++..+
T Consensus 778 ~mP~G~LlDyvr~hr 792 (1177)
T KOG1025|consen 778 LMPLGCLLDYVREHR 792 (1177)
T ss_pred hcccchHHHHHHHhh
Confidence 999999999998654
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-11 Score=117.35 Aligned_cols=111 Identities=26% Similarity=0.356 Sum_probs=42.4
Q ss_pred ccccCCCCCCEEEcCCCCCcccCCCCC-CCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCC-CCCC
Q 003307 84 PTIIGLKMLCNVSVSNNQLMGNITDIG-SIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGF-GGLG 161 (832)
Q Consensus 84 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~ 161 (832)
+.+.+...++.|+|++|.|+.. ..++ .+.+|+.|||++|.|+.+ +.+..+++|++|++++|.|+.+ .+.+ ..++
T Consensus 13 ~~~~n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp 88 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLP 88 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-T
T ss_pred cccccccccccccccccccccc-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCC
Confidence 3455666789999999999864 3455 588999999999999966 3588899999999999999954 3344 4689
Q ss_pred CCCEeeCcCCCCCCcc-chhhhcCCCCCEEECccCcCc
Q 003307 162 KLKYLDLRANRFGGDI-MHLLSQLGSVVHVDLSNNQFS 198 (832)
Q Consensus 162 ~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~Ls~N~l~ 198 (832)
+|++|+|++|+|.... -..++.+++|+.|+|.+|.++
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 9999999999997532 256778899999999999887
|
|
| >cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.6e-10 Score=126.19 Aligned_cols=86 Identities=23% Similarity=0.320 Sum_probs=72.8
Q ss_pred cCeeeeccCceEEEEEEC------CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREG-IAKGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~~lv 808 (832)
.+.||+|+||.||+|+.. .+..||||+++.. .....+.|.+|++++.++. |||||+++|+|..... .++|
T Consensus 42 ~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~~~--~~lv 119 (400)
T cd05105 42 GRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGP--IYII 119 (400)
T ss_pred hheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccCCc--eEEE
Confidence 678999999999999852 2357999999643 2333567999999999996 9999999999987776 9999
Q ss_pred EecCCCCCHHHHHhcC
Q 003307 809 SNYINAQSLAVYLQGK 824 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~ 824 (832)
||||++|+|.++|+..
T Consensus 120 ~Ey~~~g~L~~~l~~~ 135 (400)
T cd05105 120 TEYCFYGDLVNYLHKN 135 (400)
T ss_pred EEecCCCcHHHHHHHh
Confidence 9999999999999864
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF- |
| >cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2 | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.9e-10 Score=125.75 Aligned_cols=91 Identities=16% Similarity=0.172 Sum_probs=78.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||+||+|+. .+|+.||||++.... ....+.+.+|++++.+++|||||++++++.+.+. .++|||||
T Consensus 6 ~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~--~~lv~E~~ 83 (381)
T cd05626 6 IKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDN--LYFVMDYI 83 (381)
T ss_pred EEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCE--EEEEEecC
Confidence 46799999999999987 588999999985432 2234568999999999999999999999988776 99999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.+++...+.+++
T Consensus 84 ~gg~L~~~l~~~~~~~e 100 (381)
T cd05626 84 PGGDMMSLLIRMEVFPE 100 (381)
T ss_pred CCCcHHHHHHhcCCCCH
Confidence 99999999988776665
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po |
| >cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta | Back alignment and domain information |
|---|
Probab=99.09 E-value=3e-10 Score=122.64 Aligned_cols=90 Identities=20% Similarity=0.258 Sum_probs=76.8
Q ss_pred eeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 739 VIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
+||+|+||.||+++. .+|..||+|+++... ......+.+|++++.+++||||+++++++...+. .++|||||++
T Consensus 2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~--~~lv~E~~~~ 79 (323)
T cd05595 2 LLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDR--LCFVMEYANG 79 (323)
T ss_pred eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCE--EEEEEeCCCC
Confidence 699999999999997 489999999986431 2234567889999999999999999999987776 9999999999
Q ss_pred CCHHHHHhcCCCcccc
Q 003307 815 QSLAVYLQGKGLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~~~l~w~ 830 (832)
|+|.+++...+.++|.
T Consensus 80 ~~L~~~l~~~~~~~~~ 95 (323)
T cd05595 80 GELFFHLSRERVFTEE 95 (323)
T ss_pred CcHHHHHHHcCCCCHH
Confidence 9999999887777664
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in |
| >KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-10 Score=112.11 Aligned_cols=86 Identities=27% Similarity=0.457 Sum_probs=73.7
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCCh--hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIA--KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.+|+|.||.||+|+. .+|+.||||+++.... +-...-.+||+.|+.++|+||+.|+..+-..+. ..||+|||+
T Consensus 7 ~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~--l~lVfEfm~ 84 (318)
T KOG0659|consen 7 LEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSN--LSLVFEFMP 84 (318)
T ss_pred hhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCc--eEEEEEecc
Confidence 46799999999999996 6899999999965422 224567899999999999999999999988877 999999999
Q ss_pred CCCHHHHHhcCC
Q 003307 814 AQSLAVYLQGKG 825 (832)
Q Consensus 814 ~GsL~~~l~~~~ 825 (832)
- +|+..++.+.
T Consensus 85 t-dLe~vIkd~~ 95 (318)
T KOG0659|consen 85 T-DLEVVIKDKN 95 (318)
T ss_pred c-cHHHHhcccc
Confidence 6 8998887654
|
|
| >cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.4e-10 Score=122.22 Aligned_cols=90 Identities=19% Similarity=0.243 Sum_probs=77.1
Q ss_pred eeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 739 VIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
+||+|+||.||+|+. .+|+.||||+++... ......+.+|++++.+++||||+++++++...+. .++||||+++
T Consensus 2 ~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~--~~lv~e~~~~ 79 (323)
T cd05571 2 LLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDR--LCFVMEYANG 79 (323)
T ss_pred eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCE--EEEEEeCCCC
Confidence 699999999999997 489999999986432 2234567899999999999999999999988777 9999999999
Q ss_pred CCHHHHHhcCCCcccc
Q 003307 815 QSLAVYLQGKGLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~~~l~w~ 830 (832)
|+|.+++...+.++|.
T Consensus 80 ~~L~~~l~~~~~~~~~ 95 (323)
T cd05571 80 GELFFHLSRERVFSED 95 (323)
T ss_pred CcHHHHHHHcCCCCHH
Confidence 9999999887777664
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be |
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.1e-12 Score=133.33 Aligned_cols=181 Identities=30% Similarity=0.361 Sum_probs=130.5
Q ss_pred CCCcCEEEccCCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEe
Q 003307 237 FDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNL 316 (832)
Q Consensus 237 l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L 316 (832)
+..-...||+.|++......+..+..|+.+.|..|.+. .+|..+ ..+..|.+|||+.|+++.....++..-|+.|-+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i--~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAI--CNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIV 150 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhh--hhhhHHHHhhhccchhhcCChhhhcCcceeEEE
Confidence 44445667888888744436777777888888888887 777777 456667788888888776666666666777777
Q ss_pred cCCeecccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCccc
Q 003307 317 SSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPA 396 (832)
Q Consensus 317 ~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 396 (832)
++|+++ .+|..++.+. .|..||.+.|.+. .+|..++++.+|+.|++..|++. .+|.
T Consensus 151 sNNkl~-~lp~~ig~~~---------------------tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~ 206 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLP---------------------TLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPE 206 (722)
T ss_pred ecCccc-cCCcccccch---------------------hHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCH
Confidence 777776 4555555332 5777888888877 46777888888888888888887 5666
Q ss_pred ccCCCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcccccCCcccc
Q 003307 397 VLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEI 447 (832)
Q Consensus 397 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 447 (832)
.+..|+ |..||+|.|+++. +|-.|..+..|++|-|.+|.+..+ |.+++
T Consensus 207 El~~Lp-Li~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLqSP-PAqIC 254 (722)
T KOG0532|consen 207 ELCSLP-LIRLDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQSP-PAQIC 254 (722)
T ss_pred HHhCCc-eeeeecccCceee-cchhhhhhhhheeeeeccCCCCCC-hHHHH
Confidence 676554 7888888888874 677888888888888888888743 44443
|
|
| >cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.7e-10 Score=119.94 Aligned_cols=90 Identities=18% Similarity=0.270 Sum_probs=73.6
Q ss_pred eeeeccCceEEEEEEC-C------------------------CCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceee
Q 003307 739 VIGRSCHGTLYKATLD-S------------------------GSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSL 793 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~~-~------------------------g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l 793 (832)
.||+|+||.||+|.+. + ...||||.++........+|.+|++++++++||||+++
T Consensus 2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~ 81 (274)
T cd05076 2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV 81 (274)
T ss_pred CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence 4899999999999852 1 13589998865444445678999999999999999999
Q ss_pred eeEEECCCCceEEEEEecCCCCCHHHHHhc-CCCcccc
Q 003307 794 QGYYWGPKEHEKLVISNYINAQSLAVYLQG-KGLVLWF 830 (832)
Q Consensus 794 ~g~~~~~~~~~~~lv~e~~~~GsL~~~l~~-~~~l~w~ 830 (832)
+|+|..... .++||||+++|+|.++++. ++.++|.
T Consensus 82 ~~~~~~~~~--~~lv~ey~~~g~L~~~l~~~~~~~~~~ 117 (274)
T cd05076 82 HGVCVRGSE--NIMVEEFVEHGPLDVCLRKEKGRVPVA 117 (274)
T ss_pred EEEEEeCCc--eEEEEecCCCCcHHHHHHhcCCCCCHH
Confidence 999998777 9999999999999999975 3455553
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt |
| >cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.7e-10 Score=125.55 Aligned_cols=87 Identities=28% Similarity=0.373 Sum_probs=74.0
Q ss_pred cCeeeeccCceEEEEEE------CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATL------DSGSILAVKRLREG-IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv 808 (832)
.+.||+|+||.||+|+. .++..||||+++.. .....+.+.+|++++..+ +|||||+++|+|...+. .++|
T Consensus 40 ~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~~--~~lv 117 (375)
T cd05104 40 GKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGGP--TLVI 117 (375)
T ss_pred hheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCCc--ceee
Confidence 78899999999999973 24678999998643 233456789999999999 89999999999988877 9999
Q ss_pred EecCCCCCHHHHHhcCC
Q 003307 809 SNYINAQSLAVYLQGKG 825 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~ 825 (832)
||||++|+|.++++..+
T Consensus 118 ~E~~~~g~L~~~l~~~~ 134 (375)
T cd05104 118 TEYCCYGDLLNFLRRKR 134 (375)
T ss_pred ehhccCCcHHHHHHhcc
Confidence 99999999999998643
|
Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce |
| >KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.3e-10 Score=111.66 Aligned_cols=100 Identities=21% Similarity=0.314 Sum_probs=84.3
Q ss_pred cchhhhcccccCeeeeccCceEEEEEE-CCCCEEEEEEeccCCh---hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC
Q 003307 727 FTAEELSHAPAEVIGRSCHGTLYKATL-DSGSILAVKRLREGIA---KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE 802 (832)
Q Consensus 727 ~~~~~l~~~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~ 802 (832)
++++|+.. -..+|.|+||.|...+. .+|..+|+|+++.... ...+-..+|..+|..+.||.+++|++.|.+.+.
T Consensus 41 ~~l~dfe~--~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~ 118 (355)
T KOG0616|consen 41 YSLQDFER--LKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSN 118 (355)
T ss_pred cchhhhhh--eeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCe
Confidence 55555554 56799999999999997 4899999999965432 223446789999999999999999999988887
Q ss_pred ceEEEEEecCCCCCHHHHHhcCCCcccc
Q 003307 803 HEKLVISNYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 803 ~~~~lv~e~~~~GsL~~~l~~~~~l~w~ 830 (832)
.++||||+++|.|+.+|++.++++.+
T Consensus 119 --lymvmeyv~GGElFS~Lrk~~rF~e~ 144 (355)
T KOG0616|consen 119 --LYMVMEYVPGGELFSYLRKSGRFSEP 144 (355)
T ss_pred --EEEEEeccCCccHHHHHHhcCCCCch
Confidence 99999999999999999999888764
|
|
| >cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.3e-10 Score=116.39 Aligned_cols=91 Identities=22% Similarity=0.369 Sum_probs=77.6
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
...||+|+||.||+++..++..+|+|.+..... ..++|.+|++++++++||||++++++|...+. .++||||+++|+
T Consensus 9 ~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~iv~e~~~~~~ 85 (256)
T cd05114 9 MKELGSGQFGVVHLGKWRAQIKVAIKAINEGAM-SEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKP--LYIVTEFMENGC 85 (256)
T ss_pred eeEecCCcCceEEEEEeccCceEEEEecccCCc-cHHHHHHHHHHHHHCCCCCceeEEEEEccCCC--EEEEEEcCCCCc
Confidence 467999999999999988788999998864322 34679999999999999999999999988777 999999999999
Q ss_pred HHHHHhcC-CCcccc
Q 003307 817 LAVYLQGK-GLVLWF 830 (832)
Q Consensus 817 L~~~l~~~-~~l~w~ 830 (832)
|.++++.. ..++|.
T Consensus 86 L~~~~~~~~~~~~~~ 100 (256)
T cd05114 86 LLNYLRQRQGKLSKD 100 (256)
T ss_pred HHHHHHhCccCCCHH
Confidence 99999854 346654
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h |
| >cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.4e-10 Score=124.57 Aligned_cols=91 Identities=22% Similarity=0.275 Sum_probs=77.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+.. +|+.||||+++... ......+.+|++++..++||||+++++++...+. .++|||||
T Consensus 6 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~--~~lv~E~~ 83 (364)
T cd05599 6 IKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENY--LYLIMEYL 83 (364)
T ss_pred EEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCe--EEEEECCC
Confidence 567999999999999974 79999999985421 2234568899999999999999999999988777 99999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.++++.++.+++
T Consensus 84 ~~g~L~~~l~~~~~l~~ 100 (364)
T cd05599 84 PGGDMMTLLMKKDTFTE 100 (364)
T ss_pred CCcHHHHHHHHcCCCCH
Confidence 99999999988776665
|
Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica |
| >PTZ00263 protein kinase A catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.1e-10 Score=121.11 Aligned_cols=92 Identities=20% Similarity=0.253 Sum_probs=78.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+.. +|+.||||.++... ....+.+.+|++++.+++||||+++++++...+. .++||||+
T Consensus 23 ~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~e~~ 100 (329)
T PTZ00263 23 GETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENR--VYFLLEFV 100 (329)
T ss_pred EEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCE--EEEEEcCC
Confidence 578999999999999974 78999999985421 2234568999999999999999999999988777 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.+++...+.+++.
T Consensus 101 ~~~~L~~~l~~~~~~~~~ 118 (329)
T PTZ00263 101 VGGELFTHLRKAGRFPND 118 (329)
T ss_pred CCChHHHHHHHcCCCCHH
Confidence 999999999887766543
|
|
| >KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.1e-11 Score=118.74 Aligned_cols=100 Identities=15% Similarity=0.237 Sum_probs=89.3
Q ss_pred chhhhcccccCeeeeccCceEEEEE-ECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceE
Q 003307 728 TAEELSHAPAEVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEK 805 (832)
Q Consensus 728 ~~~~l~~~~~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~ 805 (832)
+++|+.+-+++++|+|+|+.|--++ +.+|..+|||++++.....+....+|++++...+ |+||+.|+.++.+.+. .
T Consensus 74 ~F~d~YkLt~e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~--F 151 (463)
T KOG0607|consen 74 KFEDMYKLTSELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFEDDTR--F 151 (463)
T ss_pred hHHHHHHhHHHHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcccce--E
Confidence 3578888889999999999999998 4799999999997766666778899999999885 9999999999998877 9
Q ss_pred EEEEecCCCCCHHHHHhcCCCccc
Q 003307 806 LVISNYINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 806 ~lv~e~~~~GsL~~~l~~~~~l~w 829 (832)
|||||-|.+|+|..+|++++.+++
T Consensus 152 YLVfEKm~GGplLshI~~~~~F~E 175 (463)
T KOG0607|consen 152 YLVFEKMRGGPLLSHIQKRKHFNE 175 (463)
T ss_pred EEEEecccCchHHHHHHHhhhccH
Confidence 999999999999999999887765
|
|
| >cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.4e-10 Score=120.72 Aligned_cols=89 Identities=21% Similarity=0.293 Sum_probs=75.9
Q ss_pred eeeccCceEEEEEEC-CCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 740 IGRSCHGTLYKATLD-SGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 740 iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
||+|+||.||+|+.. +|+.||+|+++.. .......+.+|++++.+++|||||+++++|...+. .++||||+++|
T Consensus 1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~~g 78 (312)
T cd05585 1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEK--LYLVLAFINGG 78 (312)
T ss_pred CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCe--EEEEEcCCCCC
Confidence 699999999999974 7899999998542 22334568899999999999999999999987776 99999999999
Q ss_pred CHHHHHhcCCCcccc
Q 003307 816 SLAVYLQGKGLVLWF 830 (832)
Q Consensus 816 sL~~~l~~~~~l~w~ 830 (832)
+|.++++..+.+++.
T Consensus 79 ~L~~~l~~~~~~~~~ 93 (312)
T cd05585 79 ELFHHLQREGRFDLS 93 (312)
T ss_pred cHHHHHHhcCCCCHH
Confidence 999999887766653
|
Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl |
| >cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.07 E-value=5e-10 Score=123.77 Aligned_cols=91 Identities=21% Similarity=0.223 Sum_probs=77.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+++. .+|+.||||++.... ....+.+.+|++++.+++|||||++++++.+.+. .++||||+
T Consensus 6 ~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~--~~lv~E~~ 83 (377)
T cd05629 6 VKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQY--LYLIMEFL 83 (377)
T ss_pred eEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCe--eEEEEeCC
Confidence 56799999999999987 489999999885321 2234568899999999999999999999998777 99999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.+++...+.+++
T Consensus 84 ~gg~L~~~l~~~~~~~~ 100 (377)
T cd05629 84 PGGDLMTMLIKYDTFSE 100 (377)
T ss_pred CCCcHHHHHHhcCCCCH
Confidence 99999999987666654
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of |
| >cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.8e-10 Score=121.64 Aligned_cols=91 Identities=19% Similarity=0.273 Sum_probs=77.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+.. +|+.||||+++... ....+.+..|++++.+++||||+++++++...+. .++|||||
T Consensus 6 ~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~--~~lv~e~~ 83 (333)
T cd05600 6 LTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEY--LYLAMEYV 83 (333)
T ss_pred EEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCE--EEEEEeCC
Confidence 567999999999999975 78999999986431 2234568899999999999999999999987776 99999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.++++..+.+++
T Consensus 84 ~g~~L~~~l~~~~~l~~ 100 (333)
T cd05600 84 PGGDFRTLLNNLGVLSE 100 (333)
T ss_pred CCCCHHHHHHHcCCCCH
Confidence 99999999987776655
|
Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. |
| >KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.6e-11 Score=129.29 Aligned_cols=89 Identities=22% Similarity=0.418 Sum_probs=74.7
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCC----CceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK----EHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~----~~~~~lv~e 810 (832)
.+.+|+|+||.||+|+. .+|+.||||.++.. .....+...+|+++|++++|+|||++++.-.+.. .....+|||
T Consensus 18 ~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vlvmE 97 (732)
T KOG4250|consen 18 DERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVLVME 97 (732)
T ss_pred hhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceEEEe
Confidence 56899999999999996 58999999998653 3344677899999999999999999998755443 334789999
Q ss_pred cCCCCCHHHHHhcCC
Q 003307 811 YINAQSLAVYLQGKG 825 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~ 825 (832)
||.+|||+..|....
T Consensus 98 yC~gGsL~~~L~~PE 112 (732)
T KOG4250|consen 98 YCSGGSLRKVLNSPE 112 (732)
T ss_pred ecCCCcHHHHhcCcc
Confidence 999999999998654
|
|
| >cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1 | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.9e-10 Score=121.46 Aligned_cols=92 Identities=21% Similarity=0.293 Sum_probs=78.7
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||.||+|+.. +|..+|+|.+... .....+.+.+|++++.+++|+|||+++++|...+. .++||||+++
T Consensus 10 ~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~~ 87 (333)
T cd06650 10 ISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGE--ISICMEHMDG 87 (333)
T ss_pred eccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCE--EEEEEecCCC
Confidence 567999999999999975 7899999988643 22335679999999999999999999999998776 9999999999
Q ss_pred CCHHHHHhcCCCcccc
Q 003307 815 QSLAVYLQGKGLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~~~l~w~ 830 (832)
|+|.++++..+.++++
T Consensus 88 ~~L~~~l~~~~~~~~~ 103 (333)
T cd06650 88 GSLDQVLKKAGRIPEQ 103 (333)
T ss_pred CcHHHHHHHcCCCCHH
Confidence 9999999876665543
|
Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst |
| >KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-11 Score=119.38 Aligned_cols=86 Identities=24% Similarity=0.442 Sum_probs=70.8
Q ss_pred cCeeeeccCceEEEEE-ECCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKAT-LDSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.|||+. +.+|..||.|.++-+ .....+....|+.+|+.++|||||+.++.-...+..-.+||||||.
T Consensus 24 l~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlnivmE~c~ 103 (375)
T KOG0591|consen 24 LKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIVMELCD 103 (375)
T ss_pred HHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHHHHhhc
Confidence 4679999999999998 479999999988532 3345677999999999999999999998433333212789999999
Q ss_pred CCCHHHHHh
Q 003307 814 AQSLAVYLQ 822 (832)
Q Consensus 814 ~GsL~~~l~ 822 (832)
.|+|...++
T Consensus 104 ~GDLsqmIk 112 (375)
T KOG0591|consen 104 AGDLSQMIK 112 (375)
T ss_pred ccCHHHHHH
Confidence 999999986
|
|
| >KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.5e-11 Score=115.60 Aligned_cols=81 Identities=26% Similarity=0.375 Sum_probs=67.7
Q ss_pred CeeeeccCceEEEEEEC-CCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 738 EVIGRSCHGTLYKATLD-SGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
..+|+|+||.||||+.+ +|+.||||++.+.. ....+--.+|+++|+.++|+|+|.|+..|..... .+||+|||+.
T Consensus 8 gkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrk--lhLVFE~~dh 85 (396)
T KOG0593|consen 8 GKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRK--LHLVFEYCDH 85 (396)
T ss_pred hccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcce--eEEEeeecch
Confidence 45899999999999984 89999999995432 2334567899999999999999999999988777 9999999997
Q ss_pred CCHHHH
Q 003307 815 QSLAVY 820 (832)
Q Consensus 815 GsL~~~ 820 (832)
-=|+++
T Consensus 86 TvL~eL 91 (396)
T KOG0593|consen 86 TVLHEL 91 (396)
T ss_pred HHHHHH
Confidence 444443
|
|
| >cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.3e-10 Score=120.36 Aligned_cols=92 Identities=17% Similarity=0.193 Sum_probs=77.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++.+++||||+++++++.+.+. .++||||+
T Consensus 6 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~e~~ 83 (291)
T cd05612 6 IKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRF--LYMLMEYV 83 (291)
T ss_pred eeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCe--EEEEEeCC
Confidence 567999999999999974 79999999985321 2234568899999999999999999999887766 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.++++..+.+++.
T Consensus 84 ~~~~L~~~~~~~~~~~~~ 101 (291)
T cd05612 84 PGGELFSYLRNSGRFSNS 101 (291)
T ss_pred CCCCHHHHHHHcCCCCHH
Confidence 999999999887766653
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt |
| >cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.6e-10 Score=119.71 Aligned_cols=90 Identities=21% Similarity=0.251 Sum_probs=77.1
Q ss_pred eeeeccCceEEEEEE-CCCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 739 VIGRSCHGTLYKATL-DSGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
+||+|+||.||+++. .+|+.||||++... .......+.+|++++.+++||||+++++++...+. .++||||+++
T Consensus 2 ~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~Ey~~~ 79 (328)
T cd05593 2 LLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDR--LCFVMEYVNG 79 (328)
T ss_pred eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCE--EEEEEeCCCC
Confidence 689999999999997 47999999998643 12234578899999999999999999999987777 9999999999
Q ss_pred CCHHHHHhcCCCcccc
Q 003307 815 QSLAVYLQGKGLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~~~l~w~ 830 (832)
|+|.+++...+.++|.
T Consensus 80 g~L~~~l~~~~~l~~~ 95 (328)
T cd05593 80 GELFFHLSRERVFSED 95 (328)
T ss_pred CCHHHHHHhcCCCCHH
Confidence 9999999887776654
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate |
| >cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2 | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.9e-10 Score=120.78 Aligned_cols=91 Identities=20% Similarity=0.248 Sum_probs=78.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||.||+++.. +|..+|+|.+... .....+.|.+|++++.+++||||+++++++...+. .++||||+++
T Consensus 10 ~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~~ 87 (331)
T cd06649 10 ISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGE--ISICMEHMDG 87 (331)
T ss_pred EEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCE--EEEEeecCCC
Confidence 567999999999999974 7899999988643 22335679999999999999999999999987776 9999999999
Q ss_pred CCHHHHHhcCCCccc
Q 003307 815 QSLAVYLQGKGLVLW 829 (832)
Q Consensus 815 GsL~~~l~~~~~l~w 829 (832)
|+|.++++..+.+++
T Consensus 88 ~~L~~~l~~~~~~~~ 102 (331)
T cd06649 88 GSLDQVLKEAKRIPE 102 (331)
T ss_pred CcHHHHHHHcCCCCH
Confidence 999999987766654
|
Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.2e-10 Score=116.53 Aligned_cols=94 Identities=23% Similarity=0.430 Sum_probs=78.0
Q ss_pred cCeeeeccCceEEEEEE-----CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATL-----DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
...||+|+||.||+|.. .+|..||||++........+.|.+|++++.+++||||+++++++...+....++|+||
T Consensus 9 ~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~ 88 (284)
T cd05081 9 IQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLRLVMEY 88 (284)
T ss_pred eeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceEEEEEe
Confidence 56799999999999974 2688999999876555556789999999999999999999999865543348999999
Q ss_pred CCCCCHHHHHhcC-CCcccc
Q 003307 812 INAQSLAVYLQGK-GLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~-~~l~w~ 830 (832)
+++|+|.++++.. ..++|.
T Consensus 89 ~~~~~L~~~l~~~~~~l~~~ 108 (284)
T cd05081 89 LPYGSLRDYLQKHRERLDHR 108 (284)
T ss_pred cCCCCHHHHHHhcCcCCCHH
Confidence 9999999999764 346654
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th |
| >cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.3e-10 Score=122.56 Aligned_cols=87 Identities=25% Similarity=0.352 Sum_probs=73.9
Q ss_pred cCeeeeccCceEEEEEEC------CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREGI-AKGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~~lv 808 (832)
...||+|+||.||+|+.. .++.||||+++... ....+.+.+|++++.++. |||||+++|+|...+. .++|
T Consensus 42 ~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~~~--~~iv 119 (401)
T cd05107 42 GRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKGGP--IYII 119 (401)
T ss_pred hhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCCC--cEEE
Confidence 678999999999999853 34689999996542 223457899999999997 9999999999988777 9999
Q ss_pred EecCCCCCHHHHHhcCC
Q 003307 809 SNYINAQSLAVYLQGKG 825 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~ 825 (832)
+|||++|+|.++|++.+
T Consensus 120 ~E~~~~g~L~~~l~~~~ 136 (401)
T cd05107 120 TEYCRYGDLVDYLHRNK 136 (401)
T ss_pred EeccCCCcHHHHHHhcc
Confidence 99999999999998654
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D |
| >cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1 | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.1e-10 Score=123.33 Aligned_cols=91 Identities=18% Similarity=0.203 Sum_probs=77.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+. .+++.||||++.... ....+.+.+|++++.+++|||||++++++...+. .++|||||
T Consensus 6 ~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~--~~lv~E~~ 83 (382)
T cd05625 6 IKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDN--LYFVMDYI 83 (382)
T ss_pred EEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCE--EEEEEeCC
Confidence 56799999999999997 478999999985431 2234568899999999999999999999988776 99999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.++++..+.+++
T Consensus 84 ~gg~L~~~l~~~~~~~e 100 (382)
T cd05625 84 PGGDMMSLLIRMGIFPE 100 (382)
T ss_pred CCCcHHHHHHhcCCCCH
Confidence 99999999987766554
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an |
| >KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.8e-10 Score=113.90 Aligned_cols=88 Identities=22% Similarity=0.324 Sum_probs=72.6
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCCh--hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIA--KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
-|.|++|.||.||||+. .+++.||.|+++.... +-.-.-.+||.+|.+++|||||.+.......+-+.+|+|||||+
T Consensus 81 lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~VMe~~E 160 (419)
T KOG0663|consen 81 LNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIYIVMEYVE 160 (419)
T ss_pred HhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceeeeeHHHHH
Confidence 57899999999999997 4899999999964322 11233589999999999999999999887766556999999999
Q ss_pred CCCHHHHHhcCC
Q 003307 814 AQSLAVYLQGKG 825 (832)
Q Consensus 814 ~GsL~~~l~~~~ 825 (832)
. +|..+++.-+
T Consensus 161 h-DLksl~d~m~ 171 (419)
T KOG0663|consen 161 H-DLKSLMETMK 171 (419)
T ss_pred h-hHHHHHHhcc
Confidence 7 8999887543
|
|
| >PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=7e-10 Score=120.42 Aligned_cols=92 Identities=20% Similarity=0.225 Sum_probs=77.1
Q ss_pred cCeeeeccCceEEEEEEC--CCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD--SGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~--~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
...||+|+||.||+|+.. ++..||||++... .....+.+.+|++++..++|||||++++++...+. .++||||
T Consensus 35 ~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~--~~lv~Ey 112 (340)
T PTZ00426 35 IRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESY--LYLVLEF 112 (340)
T ss_pred EEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCE--EEEEEeC
Confidence 568999999999999863 3468999988532 12234568899999999999999999999988776 9999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
|++|+|.++++..+.+++.
T Consensus 113 ~~~g~L~~~i~~~~~~~~~ 131 (340)
T PTZ00426 113 VIGGEFFTFLRRNKRFPND 131 (340)
T ss_pred CCCCcHHHHHHHcCCCCHH
Confidence 9999999999887776654
|
|
| >KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3e-10 Score=122.33 Aligned_cols=91 Identities=26% Similarity=0.376 Sum_probs=76.8
Q ss_pred chhhhcccccCeeeeccCceEEEEEECCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceE
Q 003307 728 TAEELSHAPAEVIGRSCHGTLYKATLDSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEK 805 (832)
Q Consensus 728 ~~~~l~~~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~ 805 (832)
.++|+.- ...||+|+||+||||++. ..||||.+... .....+.|..||.++++.||.||+=+.|||..+. .
T Consensus 390 p~~ev~l--~~rIGsGsFGtV~Rg~wh--GdVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~---~ 462 (678)
T KOG0193|consen 390 PPEEVLL--GERIGSGSFGTVYRGRWH--GDVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNPP---L 462 (678)
T ss_pred CHHHhhc--cceeccccccceeecccc--cceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCCc---e
Confidence 3455544 678999999999999985 36999999643 3345688999999999999999999999998766 5
Q ss_pred EEEEecCCCCCHHHHHhcCC
Q 003307 806 LVISNYINAQSLAVYLQGKG 825 (832)
Q Consensus 806 ~lv~e~~~~GsL~~~l~~~~ 825 (832)
+||..+|++-+|+.+||-.+
T Consensus 463 AIiTqwCeGsSLY~hlHv~e 482 (678)
T KOG0193|consen 463 AIITQWCEGSSLYTHLHVQE 482 (678)
T ss_pred eeeehhccCchhhhhccchh
Confidence 99999999999999999654
|
|
| >cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1 | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-09 Score=117.33 Aligned_cols=86 Identities=26% Similarity=0.423 Sum_probs=72.8
Q ss_pred cCeeeeccCceEEEEEEC-----------------CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-----------------SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYW 798 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-----------------~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~ 798 (832)
.+.||+|+||.||+|... ++..||||.+... ......+|.+|++++.+++||||++++++|.
T Consensus 10 ~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~ 89 (304)
T cd05096 10 KEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRLLGVCV 89 (304)
T ss_pred eeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEe
Confidence 568999999999999753 2347999998654 2334567999999999999999999999998
Q ss_pred CCCCceEEEEEecCCCCCHHHHHhcC
Q 003307 799 GPKEHEKLVISNYINAQSLAVYLQGK 824 (832)
Q Consensus 799 ~~~~~~~~lv~e~~~~GsL~~~l~~~ 824 (832)
..+. .++||||+++|+|.+++...
T Consensus 90 ~~~~--~~lv~e~~~~~~L~~~l~~~ 113 (304)
T cd05096 90 DEDP--LCMITEYMENGDLNQFLSSH 113 (304)
T ss_pred cCCc--eEEEEecCCCCcHHHHHHhc
Confidence 8777 99999999999999998653
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k |
| >KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.8e-10 Score=115.82 Aligned_cols=93 Identities=25% Similarity=0.407 Sum_probs=76.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|+||.||.+... +|...|||..........+...+|+++|.+++|||||+.+|.....+....+++|||+++|
T Consensus 22 ~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~mEy~~~G 101 (313)
T KOG0198|consen 22 GKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFMEYAPGG 101 (313)
T ss_pred hccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeeeeccCCC
Confidence 678999999999999985 6999999988544222256689999999999999999999985544422389999999999
Q ss_pred CHHHHHhcCC-Cccc
Q 003307 816 SLAVYLQGKG-LVLW 829 (832)
Q Consensus 816 sL~~~l~~~~-~l~w 829 (832)
||.+++.+.+ .+++
T Consensus 102 sL~~~~~~~g~~l~E 116 (313)
T KOG0198|consen 102 SLSDLIKRYGGKLPE 116 (313)
T ss_pred cHHHHHHHcCCCCCH
Confidence 9999998766 5554
|
|
| >KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-10 Score=117.38 Aligned_cols=82 Identities=22% Similarity=0.412 Sum_probs=67.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCc---eEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEH---EKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~---~~~lv~e~~ 812 (832)
.+++|+|+||.||+|.+ .+++.||||+....... --+|+++|++++|||||+|+.+|....+. ...+|+|||
T Consensus 29 ~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~----knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlVleym 104 (364)
T KOG0658|consen 29 VRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRY----KNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLVLEYM 104 (364)
T ss_pred eEEEeecccceEEEEEEcCCCceeEEEEecCCCCc----CcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHHHHhc
Confidence 67899999999999997 47899999988543221 24789999999999999999988765543 246999999
Q ss_pred CCCCHHHHHhc
Q 003307 813 NAQSLAVYLQG 823 (832)
Q Consensus 813 ~~GsL~~~l~~ 823 (832)
|. +|++.++.
T Consensus 105 P~-tL~~~~r~ 114 (364)
T KOG0658|consen 105 PE-TLYRVIRH 114 (364)
T ss_pred hH-HHHHHHHH
Confidence 97 99999983
|
|
| >cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-09 Score=118.42 Aligned_cols=90 Identities=18% Similarity=0.256 Sum_probs=76.2
Q ss_pred eeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 739 VIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
+||+|+||.||+|+.. +|+.||||.++... ....+.+.+|..++.++ +||||+++++++...+. .++|||||+
T Consensus 2 ~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~--~~lv~e~~~ 79 (329)
T cd05588 2 VIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESR--LFFVIEFVS 79 (329)
T ss_pred eEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCE--EEEEEeCCC
Confidence 6999999999999974 78999999996432 22345688999999888 79999999999987776 999999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
+|+|.+++...+.+++.
T Consensus 80 ~g~L~~~~~~~~~l~~~ 96 (329)
T cd05588 80 GGDLMFHMQRQRKLPEE 96 (329)
T ss_pred CCCHHHHHHHcCCCCHH
Confidence 99999999877777664
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl |
| >cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-09 Score=114.38 Aligned_cols=91 Identities=22% Similarity=0.275 Sum_probs=78.1
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+. .+|+.||+|++........+.+.+|+.++.+++||||+++++++...+. .++|+||+++|
T Consensus 14 ~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~--~~iv~e~~~~~ 91 (267)
T cd06646 14 IQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREK--LWICMEYCGGG 91 (267)
T ss_pred hheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCE--EEEEEeCCCCC
Confidence 56799999999999997 5889999999865433344568899999999999999999999987766 99999999999
Q ss_pred CHHHHHhcCCCccc
Q 003307 816 SLAVYLQGKGLVLW 829 (832)
Q Consensus 816 sL~~~l~~~~~l~w 829 (832)
+|.++++..+.+++
T Consensus 92 ~L~~~~~~~~~~~~ 105 (267)
T cd06646 92 SLQDIYHVTGPLSE 105 (267)
T ss_pred cHHHHHHhcCCCCH
Confidence 99999987666554
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.5e-10 Score=119.40 Aligned_cols=91 Identities=22% Similarity=0.362 Sum_probs=78.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC----Ch-hhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG----IA-KGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~----~~-~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
...||+|+||+||.|.. .+|..||||.++.. .. ...+...+|+.++++++ ||||++++.++..... .++||
T Consensus 22 ~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~~--~~ivm 99 (370)
T KOG0583|consen 22 GRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPTK--IYIVM 99 (370)
T ss_pred eeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCCe--EEEEE
Confidence 67899999999999986 48899999977543 11 22445668999999999 9999999999998888 99999
Q ss_pred ecCCCCCHHHHHhcCCCccc
Q 003307 810 NYINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~~l~w 829 (832)
||+.+|+|++++..++++.+
T Consensus 100 Ey~~gGdL~~~i~~~g~l~E 119 (370)
T KOG0583|consen 100 EYCSGGDLFDYIVNKGRLKE 119 (370)
T ss_pred EecCCccHHHHHHHcCCCCh
Confidence 99999999999998777765
|
|
| >cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-09 Score=113.36 Aligned_cols=90 Identities=24% Similarity=0.376 Sum_probs=76.5
Q ss_pred eeeeccCceEEEEEE-CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 739 VIGRSCHGTLYKATL-DSGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
.||+|+||.||+|+. .+|+.||+|..... .......|.+|++++++++||||++++++|..... .++|+||+++|+
T Consensus 2 ~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~~~ 79 (252)
T cd05084 2 RIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQP--IYIVMELVQGGD 79 (252)
T ss_pred ccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCC--eEEEEeeccCCc
Confidence 589999999999997 48999999987543 23345679999999999999999999999988777 999999999999
Q ss_pred HHHHHhcCC-Ccccc
Q 003307 817 LAVYLQGKG-LVLWF 830 (832)
Q Consensus 817 L~~~l~~~~-~l~w~ 830 (832)
|.++++..+ .++|.
T Consensus 80 L~~~~~~~~~~~~~~ 94 (252)
T cd05084 80 FLTFLRTEGPRLKVK 94 (252)
T ss_pred HHHHHHhCCCCCCHH
Confidence 999997644 45653
|
Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular |
| >cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1 | Back alignment and domain information |
|---|
Probab=99.02 E-value=1e-09 Score=120.60 Aligned_cols=92 Identities=18% Similarity=0.184 Sum_probs=78.1
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+. .+|+.||||+++... ......+.+|++++.+++|+||+++++++.+... .++|||||
T Consensus 6 ~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~--~~lv~E~~ 83 (363)
T cd05628 6 LKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLN--LYLIMEFL 83 (363)
T ss_pred eEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCe--EEEEEcCC
Confidence 56799999999999987 478999999985421 2234568889999999999999999999987776 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.++++.++.+++.
T Consensus 84 ~gg~L~~~l~~~~~l~~~ 101 (363)
T cd05628 84 PGGDMMTLLMKKDTLTEE 101 (363)
T ss_pred CCCcHHHHHHhcCCCCHH
Confidence 999999999887777653
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus |
| >cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=99.02 E-value=1e-09 Score=118.17 Aligned_cols=91 Identities=19% Similarity=0.316 Sum_probs=76.0
Q ss_pred CeeeeccCceEEEEEE----CCCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 738 EVIGRSCHGTLYKATL----DSGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~----~~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
+.||+|+||.||+++. .+|+.||||+++... ......+..|++++.+++||||+++++++...+. .++||||
T Consensus 2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~--~~lv~e~ 79 (318)
T cd05582 2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGK--LYLILDF 79 (318)
T ss_pred ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCE--EEEEEcC
Confidence 4699999999999874 368999999986432 1234557889999999999999999999987776 9999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
+++|+|.++++....++|.
T Consensus 80 ~~~~~L~~~l~~~~~l~~~ 98 (318)
T cd05582 80 LRGGDLFTRLSKEVMFTEE 98 (318)
T ss_pred CCCCcHHHHHHHcCCCCHH
Confidence 9999999999877766653
|
Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate |
| >cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-09 Score=113.20 Aligned_cols=90 Identities=23% Similarity=0.368 Sum_probs=76.6
Q ss_pred eeeeccCceEEEEEECCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCCH
Q 003307 739 VIGRSCHGTLYKATLDSGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQSL 817 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~GsL 817 (832)
+||+|+||.||+|...++..+|+|.+.... ......|.+|++++.+++||||++++++|..... .++||||+++|+|
T Consensus 2 ~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~~~L 79 (250)
T cd05085 2 LLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQP--IYIVMELVPGGDF 79 (250)
T ss_pred ccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCc--cEEEEECCCCCcH
Confidence 689999999999998889999999986543 2334579999999999999999999999988777 9999999999999
Q ss_pred HHHHhcCC-Ccccc
Q 003307 818 AVYLQGKG-LVLWF 830 (832)
Q Consensus 818 ~~~l~~~~-~l~w~ 830 (832)
.+++.... .++|+
T Consensus 80 ~~~~~~~~~~~~~~ 93 (250)
T cd05085 80 LSFLRKKKDELKTK 93 (250)
T ss_pred HHHHHhcCCCCCHH
Confidence 99987543 45553
|
Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c |
| >cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.9e-10 Score=117.76 Aligned_cols=92 Identities=22% Similarity=0.253 Sum_probs=78.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+++. .+|..+|+|.+... ......++.+|++++.+++||||++++++|...+. .++|+||+++
T Consensus 6 ~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~ey~~~ 83 (308)
T cd06615 6 LGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGE--ISICMEHMDG 83 (308)
T ss_pred EeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCE--EEEEeeccCC
Confidence 56799999999999997 47899999988643 22334668999999999999999999999988776 9999999999
Q ss_pred CCHHHHHhcCCCcccc
Q 003307 815 QSLAVYLQGKGLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~~~l~w~ 830 (832)
|+|.++++..+.++++
T Consensus 84 ~~L~~~l~~~~~~~~~ 99 (308)
T cd06615 84 GSLDQVLKKAGRIPEN 99 (308)
T ss_pred CcHHHHHHhcCCCCHH
Confidence 9999999877766654
|
Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down |
| >cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha | Back alignment and domain information |
|---|
Probab=99.02 E-value=1e-09 Score=118.67 Aligned_cols=90 Identities=19% Similarity=0.220 Sum_probs=76.7
Q ss_pred eeeeccCceEEEEEE-CCCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 739 VIGRSCHGTLYKATL-DSGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
+||+|+||.||+++. .+|+.||||.++.. .......+..|++++.+++||||+++++++...+. .++||||+++
T Consensus 2 ~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~--~~lv~E~~~~ 79 (325)
T cd05594 2 LLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDR--LCFVMEYANG 79 (325)
T ss_pred eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCE--EEEEEeCCCC
Confidence 699999999999986 48999999998642 12234567889999999999999999999987776 9999999999
Q ss_pred CCHHHHHhcCCCcccc
Q 003307 815 QSLAVYLQGKGLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~~~l~w~ 830 (832)
|+|.+++...+.++|.
T Consensus 80 ~~L~~~l~~~~~l~~~ 95 (325)
T cd05594 80 GELFFHLSRERVFSED 95 (325)
T ss_pred CcHHHHHHhcCCCCHH
Confidence 9999999887777664
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien |
| >cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4 | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-09 Score=113.82 Aligned_cols=92 Identities=24% Similarity=0.362 Sum_probs=78.1
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCC------hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGI------AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~------~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
...||+|+||.||+|...+|..+|||.++... ....+.+.+|++++++++|+||++++++|...+. .++|||
T Consensus 5 ~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~--~~lv~e 82 (265)
T cd06631 5 GEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNT--ISIFME 82 (265)
T ss_pred cceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCe--EEEEEe
Confidence 57899999999999998889999999885321 1223568899999999999999999999987766 999999
Q ss_pred cCCCCCHHHHHhcCCCcccc
Q 003307 811 YINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~~l~w~ 830 (832)
|+++|+|.+++...+.++|+
T Consensus 83 ~~~~~~L~~~l~~~~~~~~~ 102 (265)
T cd06631 83 FVPGGSISSILNRFGPLPEP 102 (265)
T ss_pred cCCCCcHHHHHHhcCCCCHH
Confidence 99999999999876666654
|
Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. |
| >cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.2e-10 Score=120.13 Aligned_cols=87 Identities=32% Similarity=0.469 Sum_probs=71.9
Q ss_pred cCeeeeccCceEEEEEE------CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATL------DSGSILAVKRLREGI-AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv 808 (832)
...||+|+||.||+|.. .++..||||+++... ....+.+.+|++++.++ +|||||+++|+|...+. ..++|
T Consensus 12 ~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~-~~~lv 90 (338)
T cd05102 12 GKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPNG-PLMVI 90 (338)
T ss_pred eeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCCC-ceEEE
Confidence 67899999999999974 245789999986532 23346799999999999 89999999999875442 37899
Q ss_pred EecCCCCCHHHHHhcC
Q 003307 809 SNYINAQSLAVYLQGK 824 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~ 824 (832)
|||+++|+|.++++..
T Consensus 91 ~ey~~~g~L~~~l~~~ 106 (338)
T cd05102 91 VEFCKYGNLSNFLRAK 106 (338)
T ss_pred EecCCCCcHHHHHHhc
Confidence 9999999999999864
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V |
| >cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-09 Score=115.79 Aligned_cols=92 Identities=18% Similarity=0.309 Sum_probs=79.1
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+++. ++|+.||+|++.... ....+.|.+|++++..++||||+++++++...+. .++||||+++
T Consensus 10 ~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~ 87 (284)
T cd06620 10 ISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENN--ICMCMEFMDC 87 (284)
T ss_pred HHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCE--EEEEEecCCC
Confidence 46799999999999997 478999999875432 3345779999999999999999999999998776 9999999999
Q ss_pred CCHHHHHhcCCCcccc
Q 003307 815 QSLAVYLQGKGLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~~~l~w~ 830 (832)
|+|.++++..+.++|+
T Consensus 88 ~~L~~~~~~~~~~~~~ 103 (284)
T cd06620 88 GSLDRIYKKGGPIPVE 103 (284)
T ss_pred CCHHHHHHhccCCCHH
Confidence 9999999887777664
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.5e-11 Score=123.72 Aligned_cols=211 Identities=22% Similarity=0.198 Sum_probs=146.4
Q ss_pred cCCCCCCEEEcCCCCCcccCC--CCCCCCCCCEEECCCCCCCccC--cccccCCCCCCEEEcccccccccCCCCC-CCCC
Q 003307 87 IGLKMLCNVSVSNNQLMGNIT--DIGSIQSLEFLDLSHNLFHGLI--PSGIVSLKNLMLLNISSNSFEGTFPSGF-GGLG 161 (832)
Q Consensus 87 ~~l~~L~~L~Ls~n~l~~~~~--~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~ 161 (832)
.++..|+.+.|.+........ ....|++++.||||.|-|.... ..-...|++|+.|+|+.|++........ ..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 467888888888877654432 4567899999999999887543 2345679999999999999874322222 3578
Q ss_pred CCCEeeCcCCCCCCc-cchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCc
Q 003307 162 KLKYLDLRANRFGGD-IMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNL 240 (832)
Q Consensus 162 ~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L 240 (832)
+|+.|.|+.|.++.. +...+..+++|+.|+|..|..-+. .-.....+..|+.|+|++|++...- .....+.++.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~---~~~~~~i~~~L~~LdLs~N~li~~~-~~~~~~~l~~L 273 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI---KATSTKILQTLQELDLSNNNLIDFD-QGYKVGTLPGL 273 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce---ecchhhhhhHHhhccccCCcccccc-cccccccccch
Confidence 899999999998732 334466889999999999952211 1112233578999999999885422 11125678889
Q ss_pred CEEEccCCccccc-CCC------ccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCc
Q 003307 241 EVFDASNNHLVGA-IPS------FNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGP 302 (832)
Q Consensus 241 ~~L~Ls~N~l~~~-~~~------~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~ 302 (832)
+.|+++.+.+... .|. ...+++|++|++..|++. ..+.----..+.+|..|.+..|.+...
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccccc
Confidence 9999999988753 222 256789999999999996 222211113456788888888888643
|
|
| >cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-09 Score=113.49 Aligned_cols=86 Identities=21% Similarity=0.244 Sum_probs=76.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+. .++..||+|.+........+.+.+|++++++++|+||+++++++...+. .++|+||+++|
T Consensus 13 ~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~~~ 90 (268)
T cd06624 13 RVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGF--FKIFMEQVPGG 90 (268)
T ss_pred eEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCE--EEEEEecCCCC
Confidence 45799999999999996 4788999999876555556789999999999999999999999988776 99999999999
Q ss_pred CHHHHHhcC
Q 003307 816 SLAVYLQGK 824 (832)
Q Consensus 816 sL~~~l~~~ 824 (832)
+|.++++.+
T Consensus 91 ~L~~~l~~~ 99 (268)
T cd06624 91 SLSALLRSK 99 (268)
T ss_pred CHHHHHHHh
Confidence 999999864
|
Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina |
| >cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-09 Score=117.48 Aligned_cols=90 Identities=24% Similarity=0.404 Sum_probs=75.2
Q ss_pred CeeeeccCceEEEEEE----CCCCEEEEEEeccCC----hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 738 EVIGRSCHGTLYKATL----DSGSILAVKRLREGI----AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~----~~g~~vAvK~l~~~~----~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
+.||+|+||.||+++. .+|+.||||.++... ......+.+|++++.+++||||+++++++...+. .++||
T Consensus 2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~--~~lv~ 79 (323)
T cd05584 2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGK--LYLIL 79 (323)
T ss_pred ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCe--EEEEE
Confidence 4699999999999985 368899999986421 1223567899999999999999999999987776 99999
Q ss_pred ecCCCCCHHHHHhcCCCccc
Q 003307 810 NYINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~~l~w 829 (832)
||+++|+|.++++..+.+.+
T Consensus 80 e~~~~~~L~~~~~~~~~~~~ 99 (323)
T cd05584 80 EYLSGGELFMHLEREGIFME 99 (323)
T ss_pred eCCCCchHHHHHHHcCCCCH
Confidence 99999999999987766554
|
Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in |
| >cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-09 Score=120.25 Aligned_cols=91 Identities=18% Similarity=0.212 Sum_probs=77.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+. .+|+.||||.+.... ....+.+.+|++++.+++|+||+++++++...+. .++|||||
T Consensus 6 ~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~--~~lv~E~~ 83 (376)
T cd05598 6 IKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDN--LYFVMDYI 83 (376)
T ss_pred EEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCE--EEEEEeCC
Confidence 46799999999999997 479999999985421 1234568899999999999999999999987776 99999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.+++...+.+++
T Consensus 84 ~~g~L~~~i~~~~~~~~ 100 (376)
T cd05598 84 PGGDMMSLLIRLGIFEE 100 (376)
T ss_pred CCCcHHHHHHhcCCCCH
Confidence 99999999987766554
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. |
| >cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Probab=98.99 E-value=2e-09 Score=111.94 Aligned_cols=92 Identities=23% Similarity=0.337 Sum_probs=78.6
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC-----hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI-----AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-----~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.+.||+|+||+||+|+.. ++..||+|.+.... ....+.|.+|++++++++|+|++++++++...+. .++|||
T Consensus 5 ~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~--~~lv~e 82 (258)
T cd06632 5 GELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDN--LYIFLE 82 (258)
T ss_pred cceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCe--EEEEEE
Confidence 568999999999999985 89999999874322 2345679999999999999999999999987776 999999
Q ss_pred cCCCCCHHHHHhcCCCcccc
Q 003307 811 YINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~~l~w~ 830 (832)
|+++++|.++++....++|.
T Consensus 83 ~~~~~~L~~~~~~~~~~~~~ 102 (258)
T cd06632 83 LVPGGSLAKLLKKYGSFPEP 102 (258)
T ss_pred ecCCCcHHHHHHhcCCCCHH
Confidence 99999999999877666654
|
Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops |
| >cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-09 Score=116.85 Aligned_cols=91 Identities=20% Similarity=0.249 Sum_probs=75.4
Q ss_pred CeeeeccCceEEEEEEC-CCCEEEEEEeccC---ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEecC
Q 003307 738 EVIGRSCHGTLYKATLD-SGSILAVKRLREG---IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
++||+|+||.||+|+.. +++.||+|.++.. .....+.+.+|+.++.++ +|||||++++++...+. .++|||||
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~--~~lv~E~~ 78 (329)
T cd05618 1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESR--LFFVIEYV 78 (329)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCE--EEEEEeCC
Confidence 36999999999999974 7899999998643 222345678899888776 89999999999987776 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.+++...+.+++.
T Consensus 79 ~~~~L~~~~~~~~~l~~~ 96 (329)
T cd05618 79 NGGDLMFHMQRQRKLPEE 96 (329)
T ss_pred CCCCHHHHHHHcCCCCHH
Confidence 999999999877766653
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o |
| >cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3 | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.7e-09 Score=113.42 Aligned_cols=84 Identities=20% Similarity=0.318 Sum_probs=71.2
Q ss_pred eeeeccCceEEEEEEC---CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 739 VIGRSCHGTLYKATLD---SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~~---~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.||+|+||.||+|... .+..+|+|+++... ......|.+|+.++++++||||++++|+|..... .++|||||++
T Consensus 2 ~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~~ 79 (269)
T cd05087 2 EIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTP--YLLVMEFCPL 79 (269)
T ss_pred cccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCC--cEEEEECCCC
Confidence 5899999999999863 34679999886433 2334578999999999999999999999987776 8999999999
Q ss_pred CCHHHHHhcC
Q 003307 815 QSLAVYLQGK 824 (832)
Q Consensus 815 GsL~~~l~~~ 824 (832)
|+|.++++..
T Consensus 80 g~L~~~l~~~ 89 (269)
T cd05087 80 GDLKGYLRSC 89 (269)
T ss_pred CcHHHHHHHh
Confidence 9999999753
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells |
| >KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-09 Score=117.88 Aligned_cols=86 Identities=22% Similarity=0.370 Sum_probs=76.0
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh---hhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA---KGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
...||+|.||.||+++.+ +|+.+|+|.+..... ...+.+.+|+++|.++. |||||.+.+.|.+... .++|||+
T Consensus 40 ~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~--~~lvmEL 117 (382)
T KOG0032|consen 40 GRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDS--VYLVMEL 117 (382)
T ss_pred hhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCe--EEEEEEe
Confidence 578999999999999975 699999999965433 23468999999999998 9999999999998887 9999999
Q ss_pred CCCCCHHHHHhcC
Q 003307 812 INAQSLAVYLQGK 824 (832)
Q Consensus 812 ~~~GsL~~~l~~~ 824 (832)
+.+|+|++.+...
T Consensus 118 ~~GGeLfd~i~~~ 130 (382)
T KOG0032|consen 118 CEGGELFDRIVKK 130 (382)
T ss_pred cCCchHHHHHHHc
Confidence 9999999998765
|
|
| >KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4e-10 Score=122.62 Aligned_cols=90 Identities=26% Similarity=0.383 Sum_probs=76.2
Q ss_pred hhhhcccccCeeeeccCceEEEEEE--CCCC--EEEEEEeccCChh-hHHHHHHHHHHHhcCCCCcceeeeeEEECCCCc
Q 003307 729 AEELSHAPAEVIGRSCHGTLYKATL--DSGS--ILAVKRLREGIAK-GKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEH 803 (832)
Q Consensus 729 ~~~l~~~~~~~iG~G~~g~Vy~~~~--~~g~--~vAvK~l~~~~~~-~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~ 803 (832)
.++|.. -+.||+|.||.|++|.+ +.|+ .||||.++..... ...+|.+|+.+|-+++|||+++|||...+. .
T Consensus 109 ee~i~l--~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~q-p- 184 (1039)
T KOG0199|consen 109 EEQIKL--YELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLDQ-P- 184 (1039)
T ss_pred HHHHHH--HHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeeccc-h-
Confidence 344443 56799999999999997 4565 4899999765443 578899999999999999999999999874 4
Q ss_pred eEEEEEecCCCCCHHHHHhc
Q 003307 804 EKLVISNYINAQSLAVYLQG 823 (832)
Q Consensus 804 ~~~lv~e~~~~GsL~~~l~~ 823 (832)
.++|+|.++.|||.+.||.
T Consensus 185 -~mMV~ELaplGSLldrLrk 203 (1039)
T KOG0199|consen 185 -AMMVFELAPLGSLLDRLRK 203 (1039)
T ss_pred -hhHHhhhcccchHHHHHhh
Confidence 7999999999999999997
|
|
| >cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-09 Score=113.37 Aligned_cols=91 Identities=22% Similarity=0.369 Sum_probs=78.2
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
.+.||+|+||.||+|...+++.||||.++.... ..++|.+|++++++++|+||+++++++...+. .++||||+++|+
T Consensus 11 ~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~~~ 87 (261)
T cd05068 11 LRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTM-DPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEP--IYIVTELMKYGS 87 (261)
T ss_pred EEEecccCCccEEEEEecCCeEEEEEeeCCCcc-cHHHHHHHHHHHHHCCCCCccceeEEEecCCC--eeeeeecccCCc
Confidence 678999999999999987778899999865432 35679999999999999999999999988777 999999999999
Q ss_pred HHHHHhcCC--Ccccc
Q 003307 817 LAVYLQGKG--LVLWF 830 (832)
Q Consensus 817 L~~~l~~~~--~l~w~ 830 (832)
|.+++.... .++|.
T Consensus 88 L~~~~~~~~~~~~~~~ 103 (261)
T cd05068 88 LLEYLQGGAGRALKLP 103 (261)
T ss_pred HHHHHhccCCCCCCHH
Confidence 999997644 45553
|
Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a |
| >cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-09 Score=112.01 Aligned_cols=91 Identities=21% Similarity=0.300 Sum_probs=77.0
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
...||+|+||.||+|...++..+|||.++.... ..++|.+|++++.+++||||++++++|...+. .++||||+++|+
T Consensus 9 ~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~~~ 85 (256)
T cd05113 9 LKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRP--IYIVTEYMSNGC 85 (256)
T ss_pred eeEecCcccceEEEEEecCCCcEEEEEcCCCcc-cHHHHHHHHHHHhcCCCCCeeeEEEEEccCCC--cEEEEEcCCCCc
Confidence 567999999999999987677799998864332 34679999999999999999999999987776 899999999999
Q ss_pred HHHHHhcC-CCcccc
Q 003307 817 LAVYLQGK-GLVLWF 830 (832)
Q Consensus 817 L~~~l~~~-~~l~w~ 830 (832)
|.++++.. ..++|.
T Consensus 86 l~~~i~~~~~~~~~~ 100 (256)
T cd05113 86 LLNYLREHGKRFQPS 100 (256)
T ss_pred HHHHHHhcCCCCCHH
Confidence 99999763 356654
|
Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds |
| >cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.8e-09 Score=111.59 Aligned_cols=92 Identities=26% Similarity=0.466 Sum_probs=76.6
Q ss_pred cCeeeeccCceEEEEEEC----CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD----SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|+||.||+|+.. +...||||.++... .....+|.+|+.++.+++||||+++++++...+. .++||||
T Consensus 9 ~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~iv~e~ 86 (266)
T cd05033 9 EKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRP--VMIITEY 86 (266)
T ss_pred eeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCc--eEEEEEc
Confidence 678999999999999873 24579999986442 3345679999999999999999999999987777 9999999
Q ss_pred CCCCCHHHHHhcC-CCcccc
Q 003307 812 INAQSLAVYLQGK-GLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~-~~l~w~ 830 (832)
+++|+|.++++.. +.++|.
T Consensus 87 ~~~~~L~~~~~~~~~~~~~~ 106 (266)
T cd05033 87 MENGSLDKFLRENDGKFTVG 106 (266)
T ss_pred CCCCCHHHHHHhccCCCCHH
Confidence 9999999999764 345553
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment |
| >cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-09 Score=116.15 Aligned_cols=90 Identities=21% Similarity=0.296 Sum_probs=75.2
Q ss_pred eeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 739 VIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
+||+|+||.||+|+.. +|+.||||+++... ....+.+..|.+++..+ +||||+++++++...+. .++||||++
T Consensus 2 ~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~--~~lv~E~~~ 79 (321)
T cd05591 2 VLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDR--LFFVMEYVN 79 (321)
T ss_pred ccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCe--EEEEEeCCC
Confidence 6899999999999974 78999999986431 22345678899998866 79999999999988776 999999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
+|+|.+++...+.++|.
T Consensus 80 ~~~L~~~l~~~~~~~~~ 96 (321)
T cd05591 80 GGDLMFQIQRSRKFDEP 96 (321)
T ss_pred CCcHHHHHHHcCCCCHH
Confidence 99999999877777654
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to |
| >cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.1e-09 Score=115.74 Aligned_cols=90 Identities=23% Similarity=0.332 Sum_probs=75.8
Q ss_pred eeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 739 VIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
+||+|+||.||+|+.. +++.||||+++... ......+..|.+++..+ +||||+++++++...+. .++||||++
T Consensus 2 ~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~--~~lv~e~~~ 79 (318)
T cd05570 2 VLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDR--LFFVMEYVN 79 (318)
T ss_pred eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCE--EEEEEcCCC
Confidence 6999999999999975 78999999986432 22345677899998877 79999999999988776 999999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
+|+|.+++...+.++|.
T Consensus 80 ~~~L~~~~~~~~~l~~~ 96 (318)
T cd05570 80 GGDLMFHIQRSGRFDEP 96 (318)
T ss_pred CCCHHHHHHHcCCCCHH
Confidence 99999999887777764
|
Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re |
| >cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-09 Score=115.33 Aligned_cols=89 Identities=19% Similarity=0.305 Sum_probs=73.6
Q ss_pred eeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhc-CCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 739 VIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGN-IKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~-~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.||+|+||.||+|+.. +++.||||+++... ....+.+..|.+++.. .+||||+++++++.+.+. .++||||++
T Consensus 2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~--~~lv~ey~~ 79 (316)
T cd05619 2 MLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKEN--LFFVMEYLN 79 (316)
T ss_pred eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCE--EEEEEeCCC
Confidence 6899999999999974 78999999986431 1234556778888876 499999999999988776 999999999
Q ss_pred CCCHHHHHhcCCCccc
Q 003307 814 AQSLAVYLQGKGLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w 829 (832)
+|+|.+++.....++|
T Consensus 80 ~g~L~~~l~~~~~~~~ 95 (316)
T cd05619 80 GGDLMFHIQSCHKFDL 95 (316)
T ss_pred CCcHHHHHHHcCCCCH
Confidence 9999999987666655
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in |
| >cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.5e-09 Score=111.60 Aligned_cols=85 Identities=21% Similarity=0.375 Sum_probs=74.7
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
.+.||+|+||.||+|...++..||+|.+..... ..+.|.+|+.++.+++|+||+++++++...+. .++||||+++|+
T Consensus 11 ~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~~~ 87 (261)
T cd05072 11 VKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTM-SVQAFLEEANLMKTLQHDKLVRLYAVVTKEEP--IYIITEYMAKGS 87 (261)
T ss_pred eeecCCcCCceEEEEEecCCceEEEEEccCCch-hHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC--cEEEEecCCCCc
Confidence 577999999999999988888999999864332 35679999999999999999999999987776 899999999999
Q ss_pred HHHHHhcC
Q 003307 817 LAVYLQGK 824 (832)
Q Consensus 817 L~~~l~~~ 824 (832)
|.++++..
T Consensus 88 L~~~l~~~ 95 (261)
T cd05072 88 LLDFLKSD 95 (261)
T ss_pred HHHHHHHh
Confidence 99999753
|
Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa |
| >cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.4e-09 Score=110.29 Aligned_cols=90 Identities=26% Similarity=0.469 Sum_probs=77.6
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
.+.||+|+||.||+|... |+.||||.++.... ..+.+.+|+.++++++|+|++++++++..... .++||||+++|+
T Consensus 11 ~~~ig~g~~g~v~~~~~~-~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~--~~~v~e~~~~~~ 86 (256)
T cd05039 11 GATIGKGEFGDVMLGDYR-GQKVAVKCLKDDST-AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNP--LYIVTEYMAKGS 86 (256)
T ss_pred eeeeecCCCceEEEEEec-CcEEEEEEeccchh-HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCC--eEEEEEecCCCc
Confidence 678999999999999974 88999999965543 45779999999999999999999999987666 999999999999
Q ss_pred HHHHHhcCC--Ccccc
Q 003307 817 LAVYLQGKG--LVLWF 830 (832)
Q Consensus 817 L~~~l~~~~--~l~w~ 830 (832)
|.++++... .++|.
T Consensus 87 L~~~~~~~~~~~~~~~ 102 (256)
T cd05039 87 LVDYLRSRGRAVITLA 102 (256)
T ss_pred HHHHHHhcCCCCCCHH
Confidence 999998655 45553
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk |
| >cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.1e-09 Score=112.91 Aligned_cols=92 Identities=23% Similarity=0.330 Sum_probs=77.1
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCCh----------hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIA----------KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEK 805 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~----------~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~ 805 (832)
.+.||+|+||.||+|.. .+|+.||||.++.... ...+.+.+|++++++++|+|++++++++...+. .
T Consensus 6 ~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~ 83 (272)
T cd06629 6 GELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEEY--L 83 (272)
T ss_pred cceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCCc--e
Confidence 67899999999999986 4799999998743111 113468899999999999999999999988776 9
Q ss_pred EEEEecCCCCCHHHHHhcCCCcccc
Q 003307 806 LVISNYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 806 ~lv~e~~~~GsL~~~l~~~~~l~w~ 830 (832)
++||||+++|+|.+++++.+.+++.
T Consensus 84 ~lv~e~~~~~~L~~~l~~~~~l~~~ 108 (272)
T cd06629 84 SIFLEYVPGGSIGSCLRTYGRFEEQ 108 (272)
T ss_pred EEEEecCCCCcHHHHHhhccCCCHH
Confidence 9999999999999999887766654
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte |
| >cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2 | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.6e-09 Score=110.72 Aligned_cols=94 Identities=22% Similarity=0.317 Sum_probs=76.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC-----ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG-----IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-----~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.+.||+|+||.||+|.. .+|..||||.+... .....+.+.+|++++.+++||||+++++++........++|||
T Consensus 7 ~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~v~e 86 (265)
T cd06652 7 GKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTLSIFME 86 (265)
T ss_pred eeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceEEEEEE
Confidence 67899999999999997 47999999987421 1223457889999999999999999999887654334789999
Q ss_pred cCCCCCHHHHHhcCCCcccc
Q 003307 811 YINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~~l~w~ 830 (832)
|+++|+|.+++.....+++.
T Consensus 87 ~~~~~~L~~~l~~~~~~~~~ 106 (265)
T cd06652 87 HMPGGSIKDQLKSYGALTEN 106 (265)
T ss_pred ecCCCcHHHHHHHcCCCCHH
Confidence 99999999999876666543
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re |
| >cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-09 Score=118.97 Aligned_cols=86 Identities=28% Similarity=0.391 Sum_probs=73.0
Q ss_pred cCeeeeccCceEEEEEE------CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATL------DSGSILAVKRLREGI-AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv 808 (832)
.+.||+|+||.||+|+. .++..||||+++... ....+.+.+|+++++++ +|+|||+++++|...+. .++|
T Consensus 43 ~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~~--~~lv 120 (374)
T cd05106 43 GKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHGGP--VLVI 120 (374)
T ss_pred hheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCCC--eEEe
Confidence 67899999999999974 234689999996432 33345688999999999 89999999999988877 9999
Q ss_pred EecCCCCCHHHHHhcC
Q 003307 809 SNYINAQSLAVYLQGK 824 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~ 824 (832)
||||++|+|.++++.+
T Consensus 121 ~ey~~~g~L~~~l~~~ 136 (374)
T cd05106 121 TEYCCYGDLLNFLRKK 136 (374)
T ss_pred HhhccCCcHHHHHHhh
Confidence 9999999999999754
|
Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.2e-11 Score=115.59 Aligned_cols=140 Identities=24% Similarity=0.275 Sum_probs=108.8
Q ss_pred CccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCC
Q 003307 126 HGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGL 205 (832)
Q Consensus 126 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 205 (832)
+|..-..+....-|++||||+|.|+ .+.++..-+++++.|++++|.|... ..++.+++|+.||||+|.++...
T Consensus 273 ~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~---- 345 (490)
T KOG1259|consen 273 NGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECV---- 345 (490)
T ss_pred CCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhh----
Confidence 3444444555677999999999998 5677888889999999999998743 33888999999999999887321
Q ss_pred CCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC--CccccccccEEEccccCCCCC
Q 003307 206 GDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP--SFNFVFSLRILRLGSNQLSGS 276 (832)
Q Consensus 206 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~L~~N~l~~~ 276 (832)
|--.++-+++.|.|++|.+.. .. ++..+-+|..||+++|++..... .+++++.|+++.|.+|.+.+.
T Consensus 346 Gwh~KLGNIKtL~La~N~iE~--LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 346 GWHLKLGNIKTLKLAQNKIET--LS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhHhhhcCEeeeehhhhhHhh--hh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 112346788999999998743 11 26777889999999999986444 789999999999999999843
|
|
| >cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-09 Score=113.02 Aligned_cols=92 Identities=18% Similarity=0.180 Sum_probs=75.8
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
..+||+|+||.||++.. .+|+.||||++.... ......+.+|++++++++||||+++++++...+. .++|||||
T Consensus 5 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~ 82 (285)
T cd05605 5 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDA--LCLVLTLM 82 (285)
T ss_pred EEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCe--EEEEEecc
Confidence 46799999999999997 479999999985432 1223557889999999999999999999987776 99999999
Q ss_pred CCCCHHHHHhcC--CCcccc
Q 003307 813 NAQSLAVYLQGK--GLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~--~~l~w~ 830 (832)
++|+|.++++.. ..++|+
T Consensus 83 ~~~~L~~~~~~~~~~~~~~~ 102 (285)
T cd05605 83 NGGDLKFHIYNMGNPGFDEE 102 (285)
T ss_pred CCCcHHHHHHhcCcCCCCHH
Confidence 999999998754 345553
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, |
| >cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.1e-09 Score=112.64 Aligned_cols=92 Identities=15% Similarity=0.289 Sum_probs=78.6
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC------hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI------AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~------~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
...||+|+||.||+|.. .+|+.||+|.+.... ....+.+.+|++++++++|+||+++++++...+. .++||
T Consensus 5 ~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~--~~~v~ 82 (268)
T cd06630 5 GQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSH--FNLFV 82 (268)
T ss_pred cceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCe--EEEEE
Confidence 57899999999999986 589999999885322 1134678999999999999999999999987776 99999
Q ss_pred ecCCCCCHHHHHhcCCCcccc
Q 003307 810 NYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~~l~w~ 830 (832)
||+++|+|.+++.+.+.++|.
T Consensus 83 e~~~~~~L~~~l~~~~~~~~~ 103 (268)
T cd06630 83 EWMAGGSVSHLLSKYGAFKEA 103 (268)
T ss_pred eccCCCcHHHHHHHhCCCCHH
Confidence 999999999999877776654
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their |
| >cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.1e-09 Score=116.44 Aligned_cols=91 Identities=18% Similarity=0.213 Sum_probs=76.8
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+.. +|+.||||+++... ....+.+.+|++++..++|+||+++++++...+. .++||||+
T Consensus 6 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~--~~lv~e~~ 83 (330)
T cd05601 6 KSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDN--LYLVMEYQ 83 (330)
T ss_pred EEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCe--EEEEECCC
Confidence 568999999999999974 89999999986432 2234568899999999999999999999987776 99999999
Q ss_pred CCCCHHHHHhcC-CCccc
Q 003307 813 NAQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~-~~l~w 829 (832)
++|+|.+++... +.+++
T Consensus 84 ~~~~L~~~l~~~~~~l~~ 101 (330)
T cd05601 84 PGGDLLSLLNRYEDQFDE 101 (330)
T ss_pred CCCCHHHHHHHhcCCCCH
Confidence 999999999865 45554
|
Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor |
| >cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.1e-09 Score=115.13 Aligned_cols=91 Identities=19% Similarity=0.172 Sum_probs=75.8
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+++.. +++.||||.+... .......|.+|+.++..++|+||+++++++...+. .++||||+
T Consensus 6 ~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~--~~lv~Ey~ 83 (331)
T cd05624 6 IKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENY--LYLVMDYY 83 (331)
T ss_pred EEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCE--EEEEEeCC
Confidence 567999999999999974 7899999998542 12234558899999999999999999999988777 99999999
Q ss_pred CCCCHHHHHhc-CCCccc
Q 003307 813 NAQSLAVYLQG-KGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~-~~~l~w 829 (832)
++|+|.++++. ...+++
T Consensus 84 ~gg~L~~~l~~~~~~l~~ 101 (331)
T cd05624 84 VGGDLLTLLSKFEDRLPE 101 (331)
T ss_pred CCCcHHHHHHHhcCCCCH
Confidence 99999999986 344554
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. |
| >cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4 | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.8e-09 Score=112.85 Aligned_cols=91 Identities=20% Similarity=0.228 Sum_probs=75.2
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|.. .+|+.||||.+.... ......+.+|++++.+++|+|+++++++|...+. .++|+|||
T Consensus 5 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~--~~lv~e~~ 82 (285)
T cd05631 5 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDA--LCLVLTIM 82 (285)
T ss_pred EEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCe--EEEEEEec
Confidence 46799999999999986 589999999885432 2234568899999999999999999999987776 99999999
Q ss_pred CCCCHHHHHhcCC--Cccc
Q 003307 813 NAQSLAVYLQGKG--LVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~--~l~w 829 (832)
++|+|.+++...+ .++|
T Consensus 83 ~~g~L~~~~~~~~~~~~~~ 101 (285)
T cd05631 83 NGGDLKFHIYNMGNPGFDE 101 (285)
T ss_pred CCCcHHHHHHhhCCCCCCH
Confidence 9999998886432 4554
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i |
| >cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.5e-09 Score=115.28 Aligned_cols=89 Identities=24% Similarity=0.335 Sum_probs=74.5
Q ss_pred eeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 739 VIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
+||+|+||.||+|+.. +|+.||||+++... ....+.+..|.+++... +||||+++++++...+. .++|||||+
T Consensus 2 ~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~--~~iv~Ey~~ 79 (320)
T cd05590 2 VLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDR--LFFVMEFVN 79 (320)
T ss_pred eeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCE--EEEEEcCCC
Confidence 6999999999999974 78999999986431 22345678888888876 69999999999987776 999999999
Q ss_pred CCCHHHHHhcCCCccc
Q 003307 814 AQSLAVYLQGKGLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w 829 (832)
+|+|.++++..+.+++
T Consensus 80 ~g~L~~~i~~~~~l~~ 95 (320)
T cd05590 80 GGDLMFHIQKSRRFDE 95 (320)
T ss_pred CchHHHHHHHcCCCCH
Confidence 9999999987776664
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal |
| >KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-09 Score=116.98 Aligned_cols=86 Identities=23% Similarity=0.408 Sum_probs=73.2
Q ss_pred cCeeeeccCceEEEEEE--C-CCC--EEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL--D-SGS--ILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~--~-~g~--~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
..+||+|.||.||+|++ + .|+ .||||..+.. .....+.|..|.-+|++++|||||+|+|.|.... .+||||
T Consensus 394 ~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e~P---~WivmE 470 (974)
T KOG4257|consen 394 KRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVEQP---MWIVME 470 (974)
T ss_pred HHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeeccc---eeEEEe
Confidence 67899999999999997 2 343 5889988653 3445778999999999999999999999998655 799999
Q ss_pred cCCCCCHHHHHhcCC
Q 003307 811 YINAQSLAVYLQGKG 825 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~ 825 (832)
.++-|.|..+|+..+
T Consensus 471 L~~~GELr~yLq~nk 485 (974)
T KOG4257|consen 471 LAPLGELREYLQQNK 485 (974)
T ss_pred cccchhHHHHHHhcc
Confidence 999999999998654
|
|
| >cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2 | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.1e-09 Score=116.68 Aligned_cols=91 Identities=19% Similarity=0.214 Sum_probs=77.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+++.. +|+.||||+++.. .....+.+.+|++++.+++|+||+++++++...+. .++|||||
T Consensus 6 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~--~~lv~E~~ 83 (360)
T cd05627 6 LKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRN--LYLIMEFL 83 (360)
T ss_pred EEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCE--EEEEEeCC
Confidence 467999999999999974 7999999998532 12234568889999999999999999999987776 99999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.++++..+.+++
T Consensus 84 ~gg~L~~~l~~~~~l~~ 100 (360)
T cd05627 84 PGGDMMTLLMKKDTLSE 100 (360)
T ss_pred CCccHHHHHHhcCCCCH
Confidence 99999999988776665
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul |
| >cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.1e-09 Score=110.64 Aligned_cols=91 Identities=24% Similarity=0.384 Sum_probs=77.0
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
.+.||+|+||.||+|...++..+|||.+..... ...+|.+|++++.+++|+||+++++++...+. .++|+||+++|+
T Consensus 9 ~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~--~~lv~e~~~~~~ 85 (256)
T cd05059 9 LKELGSGQFGVVHLGKWRGKIDVAIKMIREGAM-SEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRP--IFIVTEYMANGC 85 (256)
T ss_pred hhhhccCCCceEEEeEecCCccEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCc--eEEEEecCCCCC
Confidence 567999999999999987777899999864322 34578999999999999999999999987777 999999999999
Q ss_pred HHHHHhcC-CCcccc
Q 003307 817 LAVYLQGK-GLVLWF 830 (832)
Q Consensus 817 L~~~l~~~-~~l~w~ 830 (832)
|.++++.+ ..++|+
T Consensus 86 L~~~l~~~~~~~~~~ 100 (256)
T cd05059 86 LLNYLRERKGKLGTE 100 (256)
T ss_pred HHHHHHhcccCCCHH
Confidence 99999764 345553
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows |
| >cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.2e-09 Score=112.08 Aligned_cols=91 Identities=19% Similarity=0.322 Sum_probs=79.3
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
.+.||+|+||.||+|...++..+|+|.+.........++.+|+.++++++|+||+++++++...+. .++||||+++|+
T Consensus 11 ~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~--~~lv~e~~~~~~ 88 (261)
T cd05148 11 ERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEP--VYIITELMEKGS 88 (261)
T ss_pred hhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCCC--eEEEEeecccCC
Confidence 678999999999999987799999999876555456679999999999999999999999988877 999999999999
Q ss_pred HHHHHhcCC--Cccc
Q 003307 817 LAVYLQGKG--LVLW 829 (832)
Q Consensus 817 L~~~l~~~~--~l~w 829 (832)
|.++++... .++|
T Consensus 89 L~~~~~~~~~~~~~~ 103 (261)
T cd05148 89 LLAFLRSPEGQVLPV 103 (261)
T ss_pred HHHHHhcCCCCCCCH
Confidence 999998643 3554
|
Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom |
| >cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.3e-09 Score=114.88 Aligned_cols=91 Identities=19% Similarity=0.210 Sum_probs=75.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+++.. +|+.||||.+... .....+.|.+|+.++..++|+||+++++++...+. .++||||+
T Consensus 6 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~--~~lv~e~~ 83 (331)
T cd05597 6 LKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENN--LYLVMDYY 83 (331)
T ss_pred EEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCe--EEEEEecC
Confidence 567999999999999974 7899999998532 12234568899999999999999999999987776 99999999
Q ss_pred CCCCHHHHHhc-CCCccc
Q 003307 813 NAQSLAVYLQG-KGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~-~~~l~w 829 (832)
++|+|.+++.+ ...+++
T Consensus 84 ~g~~L~~~l~~~~~~~~~ 101 (331)
T cd05597 84 VGGDLLTLLSKFEDRLPE 101 (331)
T ss_pred CCCcHHHHHHHhcCCCCH
Confidence 99999999975 334443
|
Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, |
| >cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3 | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.3e-09 Score=114.61 Aligned_cols=90 Identities=28% Similarity=0.309 Sum_probs=73.0
Q ss_pred eeeeccCceEEEEEE-CCCCEEEEEEeccC---ChhhHHHHHHHHH-HHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 739 VIGRSCHGTLYKATL-DSGSILAVKRLREG---IAKGKKEFAREVK-KLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~f~~e~~-~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
+||+|+||.||+|+. .+|+.||||++... .....+++..|.. +++.++||||+++++++...+. .++||||++
T Consensus 2 ~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~--~~lv~e~~~ 79 (325)
T cd05604 2 VIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEK--LYFVLDFVN 79 (325)
T ss_pred ceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCE--EEEEEcCCC
Confidence 589999999999997 48999999998543 1223345666665 4678999999999999987776 999999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
+|+|.+++...+.+++.
T Consensus 80 ~~~L~~~l~~~~~~~~~ 96 (325)
T cd05604 80 GGELFFHLQRERSFPEP 96 (325)
T ss_pred CCCHHHHHHHcCCCCHH
Confidence 99999999877766653
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, |
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.1e-10 Score=118.87 Aligned_cols=140 Identities=24% Similarity=0.219 Sum_probs=58.7
Q ss_pred cccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEec
Q 003307 258 NFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDL 337 (832)
Q Consensus 258 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L 337 (832)
..+++++.|||+.|-+....|..-+...+++|+.|+|+.|++....... .+ ..+.+|+.|.|
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~--------------~~----~~l~~lK~L~l 204 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN--------------TT----LLLSHLKQLVL 204 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc--------------ch----hhhhhhheEEe
Confidence 3445555555555555443333222244555555555555554221110 00 02233444444
Q ss_pred CCCCCcC-cchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCc-ccccCCCCCCCEEEccCCccc
Q 003307 338 SNNRLSG-DLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDL-PAVLGTYPELKVIDLSLNHLN 415 (832)
Q Consensus 338 ~~N~l~~-~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~ 415 (832)
+.+.++- .+.......++|+.|+|+.|...........-+..|+.|||++|++-... -...+.++.|..|+++.+.+.
T Consensus 205 ~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 205 NSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred ccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcc
Confidence 4444431 11222222234555666555422222222333444555555555554211 122344455555555555444
|
|
| >cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2 | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.1e-09 Score=114.68 Aligned_cols=90 Identities=30% Similarity=0.395 Sum_probs=72.2
Q ss_pred CeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHH-HHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 738 EVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVK-KLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~-~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
++||+|+||.||+|+.. +|+.||+|++.... ......+.+|.. +++.++|||||++++++...+. .++|||||
T Consensus 1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~--~~lv~e~~ 78 (321)
T cd05603 1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEK--LYFVLDYV 78 (321)
T ss_pred CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCE--EEEEEcCC
Confidence 36999999999999974 78999999985421 122344556654 5788999999999999987776 99999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.+++.....+.+
T Consensus 79 ~~~~L~~~l~~~~~~~~ 95 (321)
T cd05603 79 NGGELFFHLQRERCFLE 95 (321)
T ss_pred CCCCHHHHHHHcCCCCH
Confidence 99999999987665543
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. |
| >cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.6e-09 Score=112.73 Aligned_cols=86 Identities=23% Similarity=0.450 Sum_probs=74.6
Q ss_pred cCeeeeccCceEEEEEEC------CCCEEEEEEeccCChh-hHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREGIAK-GKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~~~-~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
.+.||+|+||.||+|... ++..||||.++..... ..+.|.+|++++.+++|+|++++++++..... .++||
T Consensus 10 ~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~--~~lv~ 87 (280)
T cd05049 10 KRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDP--PIMVF 87 (280)
T ss_pred HhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCC--eEEEE
Confidence 567999999999999863 3478999998654333 45789999999999999999999999988777 99999
Q ss_pred ecCCCCCHHHHHhcC
Q 003307 810 NYINAQSLAVYLQGK 824 (832)
Q Consensus 810 e~~~~GsL~~~l~~~ 824 (832)
||+++|+|.++++..
T Consensus 88 e~~~~~~L~~~i~~~ 102 (280)
T cd05049 88 EYMEHGDLNKFLRSH 102 (280)
T ss_pred ecCCCCCHHHHHHhc
Confidence 999999999999764
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt |
| >KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.6e-10 Score=116.95 Aligned_cols=87 Identities=25% Similarity=0.420 Sum_probs=73.6
Q ss_pred hhhhcccccCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEE
Q 003307 729 AEELSHAPAEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 729 ~~~l~~~~~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv 808 (832)
+|+|.+ -+-+|+|+-|.||+|+++ ++.||||++++.. ..+|+.|++++|+||+++.|.|..... ..||
T Consensus 123 Fe~IsE--LeWlGSGaQGAVF~Grl~-netVAVKKV~elk-------ETdIKHLRkLkH~NII~FkGVCtqsPc--yCIi 190 (904)
T KOG4721|consen 123 FEEISE--LEWLGSGAQGAVFLGRLH-NETVAVKKVRELK-------ETDIKHLRKLKHPNIITFKGVCTQSPC--YCII 190 (904)
T ss_pred HHHhhh--hhhhccCcccceeeeecc-CceehhHHHhhhh-------hhhHHHHHhccCcceeeEeeeecCCce--eEEe
Confidence 344443 456999999999999995 7899999985432 468899999999999999999988777 8899
Q ss_pred EecCCCCCHHHHHhcCCCc
Q 003307 809 SNYINAQSLAVYLQGKGLV 827 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~~l 827 (832)
||||+.|-|+..|+..+.+
T Consensus 191 MEfCa~GqL~~VLka~~~i 209 (904)
T KOG4721|consen 191 MEFCAQGQLYEVLKAGRPI 209 (904)
T ss_pred eeccccccHHHHHhccCcc
Confidence 9999999999999987753
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-10 Score=113.83 Aligned_cols=132 Identities=23% Similarity=0.252 Sum_probs=83.0
Q ss_pred CCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCC
Q 003307 160 LGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDN 239 (832)
Q Consensus 160 l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~ 239 (832)
...|+.|||++|.|+ .+.++..-++.++.|++|+|.+. .++++..+++|+.|||++|.++... .+ -..+-+
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-----~v~nLa~L~~L~~LDLS~N~Ls~~~-Gw--h~KLGN 353 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-----TVQNLAELPQLQLLDLSGNLLAECV-GW--HLKLGN 353 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-----eehhhhhcccceEeecccchhHhhh-hh--HhhhcC
Confidence 456788888888776 45566667777888888888776 3455666777777777777775321 11 234566
Q ss_pred cCEEEccCCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCc
Q 003307 240 LEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGP 302 (832)
Q Consensus 240 L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~ 302 (832)
++.|.|+.|.+. .+..+..+.+|..||+++|+|. .+...-.-++++.|+.+.|.+|.+.+.
T Consensus 354 IKtL~La~N~iE-~LSGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 354 IKTLKLAQNKIE-TLSGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred EeeeehhhhhHh-hhhhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCcccc
Confidence 777777777665 3334566667777777777775 222211114556666666666666543
|
|
| >cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.7e-09 Score=111.20 Aligned_cols=88 Identities=20% Similarity=0.349 Sum_probs=72.5
Q ss_pred eeeeccCceEEEEEEC-CC----------CEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEE
Q 003307 739 VIGRSCHGTLYKATLD-SG----------SILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLV 807 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~~-~g----------~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~l 807 (832)
.||+|+||.||+|+.. .+ ..+|+|.+...... ...|.+|+.++++++||||++++|+|.. .. .++
T Consensus 2 ~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~--~~l 77 (259)
T cd05037 2 HLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRD-SLAFFETASLMSQLSHKHLVKLYGVCVR-DE--NIM 77 (259)
T ss_pred cccccccceEEEEEEeccCCccccCCccceeeeeeccccchhh-HHHHHHHHHHHHcCCCcchhheeeEEec-CC--cEE
Confidence 5899999999999985 33 25788877544332 5789999999999999999999999987 55 799
Q ss_pred EEecCCCCCHHHHHhcCC-Ccccc
Q 003307 808 ISNYINAQSLAVYLQGKG-LVLWF 830 (832)
Q Consensus 808 v~e~~~~GsL~~~l~~~~-~l~w~ 830 (832)
|+||+++|+|.++++... .++|.
T Consensus 78 v~e~~~~~~L~~~l~~~~~~~~~~ 101 (259)
T cd05037 78 VEEYVKFGPLDVFLHREKNNVSLH 101 (259)
T ss_pred EEEcCCCCcHHHHHHhhccCCCHH
Confidence 999999999999998655 55554
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki |
| >cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.1e-09 Score=117.51 Aligned_cols=91 Identities=21% Similarity=0.275 Sum_probs=77.8
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+.. +|+.||||+++... ....+.+.+|++++..++||||+++++++...+. .++||||+
T Consensus 6 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~--~~lv~e~~ 83 (350)
T cd05573 6 IKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEH--LYLVMEYM 83 (350)
T ss_pred EEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCe--EEEEEcCC
Confidence 467999999999999974 79999999985421 1335678999999999999999999999987776 99999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.+++...+.+++
T Consensus 84 ~~~~L~~~l~~~~~l~~ 100 (350)
T cd05573 84 PGGDLMNLLIRKDVFPE 100 (350)
T ss_pred CCCCHHHHHHHcCCCCH
Confidence 99999999987766554
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the |
| >cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3 | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.8e-09 Score=111.67 Aligned_cols=92 Identities=21% Similarity=0.280 Sum_probs=78.7
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+. .+++.||+|.++.........+.+|+.++..++||||+++++++...+. .++|+||+++|
T Consensus 14 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~--~~lv~e~~~~~ 91 (267)
T cd06645 14 IQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDK--LWICMEFCGGG 91 (267)
T ss_pred HHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCE--EEEEEeccCCC
Confidence 56799999999999987 4789999999865444444568899999999999999999999987776 99999999999
Q ss_pred CHHHHHhcCCCcccc
Q 003307 816 SLAVYLQGKGLVLWF 830 (832)
Q Consensus 816 sL~~~l~~~~~l~w~ 830 (832)
+|.++++..+.+++.
T Consensus 92 ~L~~~~~~~~~~~~~ 106 (267)
T cd06645 92 SLQDIYHVTGPLSES 106 (267)
T ss_pred cHHHHHHhcCCCCHH
Confidence 999999877766653
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1 | Back alignment and domain information |
|---|
Probab=98.92 E-value=5e-09 Score=110.83 Aligned_cols=86 Identities=27% Similarity=0.470 Sum_probs=73.4
Q ss_pred cCeeeeccCceEEEEEE-----CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-----DSGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-----~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
...||+|+||.||+|.. .++..||+|.+... .....+.|.+|++++++++||||+++++++..... .++|||
T Consensus 10 ~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~--~~lv~e 87 (283)
T cd05090 10 MEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQP--VCMLFE 87 (283)
T ss_pred eeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCc--eEEEEE
Confidence 56799999999999984 35688999998643 33344679999999999999999999999988777 999999
Q ss_pred cCCCCCHHHHHhcC
Q 003307 811 YINAQSLAVYLQGK 824 (832)
Q Consensus 811 ~~~~GsL~~~l~~~ 824 (832)
|+++|+|.++++.+
T Consensus 88 ~~~~~~L~~~l~~~ 101 (283)
T cd05090 88 YLNQGDLHEFLIMR 101 (283)
T ss_pred cCCCCcHHHHHHhc
Confidence 99999999999643
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.8e-09 Score=111.54 Aligned_cols=91 Identities=21% Similarity=0.318 Sum_probs=78.0
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|... ++..+|+|.+........+.|.+|++++++++|+|++++++++..... .++||||+++|
T Consensus 10 ~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~~ 87 (280)
T cd06611 10 IGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYENK--LWILIEFCDGG 87 (280)
T ss_pred HHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCe--EEEEeeccCCC
Confidence 456999999999999974 789999999865555556779999999999999999999999987776 99999999999
Q ss_pred CHHHHHhcC-CCccc
Q 003307 816 SLAVYLQGK-GLVLW 829 (832)
Q Consensus 816 sL~~~l~~~-~~l~w 829 (832)
+|.+++... +.+++
T Consensus 88 ~L~~~~~~~~~~l~~ 102 (280)
T cd06611 88 ALDSIMLELERGLTE 102 (280)
T ss_pred cHHHHHHHhcCCCCH
Confidence 999998763 34554
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti |
| >cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.9e-09 Score=112.02 Aligned_cols=87 Identities=23% Similarity=0.469 Sum_probs=75.0
Q ss_pred cCeeeeccCceEEEEEE------CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL------DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.+.||+|+||+||++.. .++..+|+|.+........+.|.+|++++.+++||||++++++|...+. .++|||
T Consensus 10 ~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e 87 (288)
T cd05093 10 KRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDP--LIMVFE 87 (288)
T ss_pred ccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCc--cEEEEE
Confidence 67899999999999984 2456799999876555556789999999999999999999999988777 999999
Q ss_pred cCCCCCHHHHHhcCC
Q 003307 811 YINAQSLAVYLQGKG 825 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~ 825 (832)
|+++|+|.++++..+
T Consensus 88 ~~~~~~L~~~i~~~~ 102 (288)
T cd05093 88 YMKHGDLNKFLRAHG 102 (288)
T ss_pred cCCCCCHHHHHHHcC
Confidence 999999999997543
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly |
| >KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.4e-09 Score=110.29 Aligned_cols=85 Identities=22% Similarity=0.352 Sum_probs=75.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChh-hHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAK-GKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~-~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.++||.|..++||+|+. +.++.||||++.-.... ..+...+|+..|+-++|||||+.+..|..... .++||.||.+
T Consensus 31 ~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~--LWvVmpfMa~ 108 (516)
T KOG0582|consen 31 QEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSE--LWVVMPFMAG 108 (516)
T ss_pred EEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecce--eEEeehhhcC
Confidence 56899999999999985 78899999999644333 34788999999999999999999999988877 9999999999
Q ss_pred CCHHHHHhc
Q 003307 815 QSLAVYLQG 823 (832)
Q Consensus 815 GsL~~~l~~ 823 (832)
||+.+.+..
T Consensus 109 GS~ldIik~ 117 (516)
T KOG0582|consen 109 GSLLDIIKT 117 (516)
T ss_pred CcHHHHHHH
Confidence 999999864
|
|
| >cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2 | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.9e-09 Score=109.88 Aligned_cols=92 Identities=27% Similarity=0.543 Sum_probs=76.7
Q ss_pred cCeeeeccCceEEEEEEC-CCC---EEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGS---ILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~---~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|+||.||+|+.. ++. .+|||.++.. .....++|..|++++++++|+|++++.+++...+. .++||||
T Consensus 10 ~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~ 87 (268)
T cd05063 10 QKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKP--AMIITEY 87 (268)
T ss_pred eeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCC--cEEEEEc
Confidence 678999999999999974 343 7999998654 23345679999999999999999999999988777 9999999
Q ss_pred CCCCCHHHHHhcC-CCcccc
Q 003307 812 INAQSLAVYLQGK-GLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~-~~l~w~ 830 (832)
+++|+|.++++.+ +.++|.
T Consensus 88 ~~~~~L~~~~~~~~~~~~~~ 107 (268)
T cd05063 88 MENGALDKYLRDHDGEFSSY 107 (268)
T ss_pred CCCCCHHHHHHhcCCCCCHH
Confidence 9999999999764 455553
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored |
| >cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1 | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.8e-09 Score=111.55 Aligned_cols=82 Identities=18% Similarity=0.274 Sum_probs=69.3
Q ss_pred eeeccCceEEEEEE-CCCCEEEEEEeccCCh---hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 740 IGRSCHGTLYKATL-DSGSILAVKRLREGIA---KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 740 iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
||+|+||+||+++. .+|+.||||++..... ...+.+..|++++++++|+||+++.+++..... .++|||||++|
T Consensus 1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~--~~lv~e~~~~g 78 (280)
T cd05608 1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTD--LCLVMTIMNGG 78 (280)
T ss_pred CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCe--EEEEEeCCCCC
Confidence 69999999999987 4899999999854321 223567889999999999999999999887766 99999999999
Q ss_pred CHHHHHhc
Q 003307 816 SLAVYLQG 823 (832)
Q Consensus 816 sL~~~l~~ 823 (832)
+|.++++.
T Consensus 79 ~L~~~~~~ 86 (280)
T cd05608 79 DLRYHIYN 86 (280)
T ss_pred CHHHHHHh
Confidence 99988853
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g |
| >cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.2e-09 Score=113.25 Aligned_cols=89 Identities=21% Similarity=0.313 Sum_probs=72.0
Q ss_pred eeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhc-CCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 739 VIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGN-IKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~-~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
+||+|+||.||+|+.. +++.||||.++... ....+.+..|.+++.. .+||||+++++++...+. .++||||++
T Consensus 2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~--~~lv~e~~~ 79 (316)
T cd05592 2 VLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEH--LFFVMEYLN 79 (316)
T ss_pred eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCE--EEEEEcCCC
Confidence 6999999999999974 78999999986431 1223456667777765 489999999999987776 999999999
Q ss_pred CCCHHHHHhcCCCccc
Q 003307 814 AQSLAVYLQGKGLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w 829 (832)
+|+|.++++..+.+++
T Consensus 80 gg~L~~~~~~~~~~~~ 95 (316)
T cd05592 80 GGDLMFHIQSSGRFDE 95 (316)
T ss_pred CCcHHHHHHHcCCCCH
Confidence 9999999987766554
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp |
| >cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.9e-09 Score=116.02 Aligned_cols=87 Identities=30% Similarity=0.437 Sum_probs=72.1
Q ss_pred cCeeeeccCceEEEEEE------CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATL------DSGSILAVKRLREGI-AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv 808 (832)
...||+|+||.||+|.. .+++.||||+++... ....+.+.+|++++.++ +|||||+++++|...+. ..++|
T Consensus 12 ~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~-~~~lv 90 (343)
T cd05103 12 GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG-PLMVI 90 (343)
T ss_pred cccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCC-ceEEE
Confidence 67899999999999973 357899999996533 22345788999999999 68999999999875543 37899
Q ss_pred EecCCCCCHHHHHhcC
Q 003307 809 SNYINAQSLAVYLQGK 824 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~ 824 (832)
+||+++|+|.++++..
T Consensus 91 ~ey~~~g~L~~~i~~~ 106 (343)
T cd05103 91 VEFCKFGNLSNYLRSK 106 (343)
T ss_pred EeccCCCcHHHHHHhc
Confidence 9999999999999864
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp |
| >cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.3e-09 Score=109.13 Aligned_cols=90 Identities=20% Similarity=0.358 Sum_probs=77.4
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
...||+|+||.||+|...++..||||.+..... ..+++.+|++++++++|+||+++++++..... .++||||+++|+
T Consensus 11 ~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~~v~e~~~~~~ 87 (261)
T cd05034 11 ERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTM-SPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEP--IYIVTEYMSKGS 87 (261)
T ss_pred eeeeccCcceEEEEEEEcCCceEEEEEecCCcc-CHHHHHHHHHHHhhCCCCCEeeeeeeeecCCc--eEEEEeccCCCC
Confidence 678999999999999987778999999864332 35679999999999999999999999987666 999999999999
Q ss_pred HHHHHhcCC--Cccc
Q 003307 817 LAVYLQGKG--LVLW 829 (832)
Q Consensus 817 L~~~l~~~~--~l~w 829 (832)
|.++++... .++|
T Consensus 88 L~~~i~~~~~~~~~~ 102 (261)
T cd05034 88 LLDFLKSGEGKKLRL 102 (261)
T ss_pred HHHHHhccccCCCCH
Confidence 999998643 4555
|
Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t |
| >cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-09 Score=113.92 Aligned_cols=90 Identities=19% Similarity=0.302 Sum_probs=74.2
Q ss_pred eeeeccCceEEEEEEC-CC-------CEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 739 VIGRSCHGTLYKATLD-SG-------SILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~~-~g-------~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.||+|+||.||+|+.. .+ ..||+|.+........++|.+|+.++..++|||+|++++++...+. .++|||
T Consensus 2 ~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~--~~lv~e 79 (258)
T cd05078 2 SLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDE--SIMVQE 79 (258)
T ss_pred CCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCC--cEEEEe
Confidence 5899999999999863 22 3488888765444456789999999999999999999999988776 899999
Q ss_pred cCCCCCHHHHHhcCC-Ccccc
Q 003307 811 YINAQSLAVYLQGKG-LVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~-~l~w~ 830 (832)
|+++|+|.++++..+ .++|.
T Consensus 80 ~~~~g~L~~~l~~~~~~~~~~ 100 (258)
T cd05078 80 YVKFGSLDTYLKKNKNLINIS 100 (258)
T ss_pred cCCCCcHHHHHhcCCCCCCHH
Confidence 999999999998654 35553
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity |
| >KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.9e-10 Score=111.61 Aligned_cols=89 Identities=20% Similarity=0.344 Sum_probs=76.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
-..+|+|+||.||||.. ..|.++|||++.... +.++...|+.+|.+.+.|++|+.||.|..... .++|||||.-|
T Consensus 38 ~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~s--DLQEIIKEISIMQQC~S~yVVKYYGSYFK~sD--LWIVMEYCGAG 113 (502)
T KOG0574|consen 38 VGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDT--DLQEIIKEISIMQQCKSKYVVKYYGSYFKHSD--LWIVMEYCGAG 113 (502)
T ss_pred HHHhcCCcchHHHHHHHhccCcEEEEEecCccc--hHHHHHHHHHHHHHcCCchhhhhhhhhccCCc--eEeehhhcCCC
Confidence 46799999999999987 489999999985433 45789999999999999999999999986666 99999999999
Q ss_pred CHHHHHhcC-CCccc
Q 003307 816 SLAVYLQGK-GLVLW 829 (832)
Q Consensus 816 sL~~~l~~~-~~l~w 829 (832)
|..|.++-+ +++.+
T Consensus 114 SiSDI~R~R~K~L~E 128 (502)
T KOG0574|consen 114 SISDIMRARRKPLSE 128 (502)
T ss_pred cHHHHHHHhcCCccH
Confidence 999999854 44544
|
|
| >cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.1e-09 Score=115.94 Aligned_cols=86 Identities=19% Similarity=0.203 Sum_probs=73.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+.. +|+.||||++... .....+.|.+|+++++.++||||+++++++...+. .++|||||
T Consensus 48 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~--~~lv~Ey~ 125 (370)
T cd05596 48 IKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKY--LYMVMEYM 125 (370)
T ss_pred EEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCE--EEEEEcCC
Confidence 578999999999999974 7899999998532 12234557899999999999999999999987776 99999999
Q ss_pred CCCCHHHHHhcC
Q 003307 813 NAQSLAVYLQGK 824 (832)
Q Consensus 813 ~~GsL~~~l~~~ 824 (832)
++|+|.++++..
T Consensus 126 ~gg~L~~~l~~~ 137 (370)
T cd05596 126 PGGDLVNLMSNY 137 (370)
T ss_pred CCCcHHHHHHhc
Confidence 999999998764
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in |
| >cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.1e-09 Score=113.06 Aligned_cols=90 Identities=29% Similarity=0.351 Sum_probs=72.4
Q ss_pred eeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHH-HHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 739 VIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVK-KLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~-~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
+||+|+||+||+|+.. +|+.||||++.... ....+++..|.. ++..++||||+++++++...+. .++||||++
T Consensus 2 ~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~--~~lv~e~~~ 79 (323)
T cd05575 2 VIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADK--LYFVLDYVN 79 (323)
T ss_pred eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCE--EEEEEcCCC
Confidence 6999999999999974 89999999985421 122344555555 4678999999999999987776 999999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
+|+|.++++..+.+++.
T Consensus 80 ~g~L~~~l~~~~~~~~~ 96 (323)
T cd05575 80 GGELFFHLQRERSFPEP 96 (323)
T ss_pred CCCHHHHHHhcCCCCHH
Confidence 99999999877766653
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr |
| >cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.3e-09 Score=109.95 Aligned_cols=90 Identities=16% Similarity=0.271 Sum_probs=73.6
Q ss_pred eeeeccCceEEEEEECC-------------CCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceE
Q 003307 739 VIGRSCHGTLYKATLDS-------------GSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEK 805 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~~~-------------g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~ 805 (832)
.||+|+||.||+|...+ ...||+|.+..........|.+|+.+++.++||||++++++|..... .
T Consensus 2 ~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~--~ 79 (262)
T cd05077 2 HLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVE--N 79 (262)
T ss_pred ccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCC--C
Confidence 58999999999998531 23589998865444445678999999999999999999999987776 8
Q ss_pred EEEEecCCCCCHHHHHhcC-CCcccc
Q 003307 806 LVISNYINAQSLAVYLQGK-GLVLWF 830 (832)
Q Consensus 806 ~lv~e~~~~GsL~~~l~~~-~~l~w~ 830 (832)
++||||+++|+|..+++.+ ..++|.
T Consensus 80 ~lv~e~~~~~~l~~~~~~~~~~~~~~ 105 (262)
T cd05077 80 IMVEEFVEFGPLDLFMHRKSDVLTTP 105 (262)
T ss_pred EEEEecccCCCHHHHHHhcCCCCCHH
Confidence 9999999999999998754 345553
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom |
| >KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-09 Score=115.25 Aligned_cols=91 Identities=21% Similarity=0.235 Sum_probs=78.1
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCCh---hhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIA---KGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
+++||+|+|++||+|+. ++++.+|||++.+.-. .-.+....|-++|.++ .||-||+|+..+.+... .|.|+||
T Consensus 78 g~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~s--LYFvLe~ 155 (604)
T KOG0592|consen 78 GKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEES--LYFVLEY 155 (604)
T ss_pred hheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccc--eEEEEEe
Confidence 88999999999999986 5899999999954321 1234467888899999 89999999999988887 9999999
Q ss_pred CCCCCHHHHHhcCCCccc
Q 003307 812 INAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w 829 (832)
++||+|.++|++-+.|++
T Consensus 156 A~nGdll~~i~K~Gsfde 173 (604)
T KOG0592|consen 156 APNGDLLDLIKKYGSFDE 173 (604)
T ss_pred cCCCcHHHHHHHhCcchH
Confidence 999999999999888764
|
|
| >cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.7e-09 Score=114.40 Aligned_cols=91 Identities=19% Similarity=0.192 Sum_probs=75.0
Q ss_pred cCeeeec--cCceEEEEEE-CCCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRS--CHGTLYKATL-DSGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G--~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
..+||+| +||+||+++. ++|+.||||+++... ....+.+.+|+++++.++|||||+++++|...+. .++|+||
T Consensus 3 ~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~--~~lv~e~ 80 (327)
T cd08227 3 LTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNE--LWVVTSF 80 (327)
T ss_pred hhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCE--EEEEEec
Confidence 3579999 7889999987 589999999986432 2234567789999999999999999999988777 9999999
Q ss_pred CCCCCHHHHHhc--CCCccc
Q 003307 812 INAQSLAVYLQG--KGLVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~--~~~l~w 829 (832)
|++|+|.+++.. .+.++|
T Consensus 81 ~~~~~l~~~~~~~~~~~l~~ 100 (327)
T cd08227 81 MAYGSAKDLICTHFMDGMSE 100 (327)
T ss_pred cCCCcHHHHHHhhccCCCCH
Confidence 999999999964 234555
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype |
| >cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.5e-09 Score=109.56 Aligned_cols=85 Identities=22% Similarity=0.340 Sum_probs=70.9
Q ss_pred eeeeccCceEEEEEEC---CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 739 VIGRSCHGTLYKATLD---SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~~---~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.||+|+||.||+|+.. ....+|+|.+... .......|.+|+++++.++|+||++++++|..... .++||||+++
T Consensus 2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~--~~lv~e~~~~ 79 (269)
T cd05042 2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIP--YLLVLEFCPL 79 (269)
T ss_pred cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCc--eEEEEEeCCC
Confidence 4899999999999753 3457888887543 23345678999999999999999999999987777 9999999999
Q ss_pred CCHHHHHhcCC
Q 003307 815 QSLAVYLQGKG 825 (832)
Q Consensus 815 GsL~~~l~~~~ 825 (832)
|+|.++++..+
T Consensus 80 g~L~~~l~~~~ 90 (269)
T cd05042 80 GDLKNYLRSNR 90 (269)
T ss_pred CcHHHHHHhcc
Confidence 99999997643
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina |
| >cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.5e-09 Score=109.48 Aligned_cols=91 Identities=25% Similarity=0.492 Sum_probs=75.3
Q ss_pred cCeeeeccCceEEEEEEC-C---CCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-S---GSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~---g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|+||.||+|+.. + +..+|+|.++... ....+.|.+|+.++.+++||||+++++++...+. .++||||
T Consensus 9 ~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~ 86 (267)
T cd05066 9 EKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKP--VMIVTEY 86 (267)
T ss_pred eeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCc--cEEEEEc
Confidence 678999999999999863 2 3479999986432 3345679999999999999999999999987777 9999999
Q ss_pred CCCCCHHHHHhcCC-Cccc
Q 003307 812 INAQSLAVYLQGKG-LVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~~-~l~w 829 (832)
+++|+|.++++... .++|
T Consensus 87 ~~~~~L~~~~~~~~~~~~~ 105 (267)
T cd05066 87 MENGSLDAFLRKHDGQFTV 105 (267)
T ss_pred CCCCCHHHHHHhcCCCCCH
Confidence 99999999998643 4454
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul |
| >cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7 | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.4e-09 Score=110.18 Aligned_cols=84 Identities=19% Similarity=0.311 Sum_probs=70.1
Q ss_pred eeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 740 IGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 740 iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
||+|+||.||+++. .+|+.||+|++.... ....+.+..|++++.+++||||+++.+++..... .++||||+++|
T Consensus 1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~--~~lv~e~~~g~ 78 (277)
T cd05607 1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTH--LCLVMSLMNGG 78 (277)
T ss_pred CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCe--EEEEEecCCCC
Confidence 69999999999997 479999999985321 1223456679999999999999999999987776 99999999999
Q ss_pred CHHHHHhcCC
Q 003307 816 SLAVYLQGKG 825 (832)
Q Consensus 816 sL~~~l~~~~ 825 (832)
+|.++++...
T Consensus 79 ~L~~~~~~~~ 88 (277)
T cd05607 79 DLKYHIYNVG 88 (277)
T ss_pred CHHHHHHhcc
Confidence 9999886543
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr |
| >KOG0586 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.1e-09 Score=114.30 Aligned_cols=91 Identities=21% Similarity=0.294 Sum_probs=79.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCCh--hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIA--KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|.|++|..|+. .+|..||||.+++... ...+.+.+|+++|..+.|||||+++.+...+.. .|+||||+.
T Consensus 61 ~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~--lylV~eya~ 138 (596)
T KOG0586|consen 61 IKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEAT--LYLVMEYAS 138 (596)
T ss_pred eeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecce--eEEEEEecc
Confidence 56799999999999997 4899999999976432 234568999999999999999999999998888 999999999
Q ss_pred CCCHHHHHhcCCCccc
Q 003307 814 AQSLAVYLQGKGLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w 829 (832)
+|.++++|...+++..
T Consensus 139 ~ge~~~yl~~~gr~~e 154 (596)
T KOG0586|consen 139 GGELFDYLVKHGRMKE 154 (596)
T ss_pred CchhHHHHHhcccchh
Confidence 9999999988776543
|
|
| >cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.1e-09 Score=113.52 Aligned_cols=91 Identities=19% Similarity=0.203 Sum_probs=75.6
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+++.. +++.+|+|.+... .....+.|.+|+.++..++|++|+++++++...+. .++||||+
T Consensus 6 ~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~--~~lv~ey~ 83 (332)
T cd05623 6 LKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENN--LYLVMDYY 83 (332)
T ss_pred EEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCE--EEEEEecc
Confidence 567999999999999975 6889999998532 12223458899999999999999999999987776 99999999
Q ss_pred CCCCHHHHHhc-CCCccc
Q 003307 813 NAQSLAVYLQG-KGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~-~~~l~w 829 (832)
++|+|.++++. ...+++
T Consensus 84 ~~g~L~~~l~~~~~~l~~ 101 (332)
T cd05623 84 VGGDLLTLLSKFEDRLPE 101 (332)
T ss_pred CCCcHHHHHHHhcCCCCH
Confidence 99999999986 345554
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw |
| >cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.3e-09 Score=110.57 Aligned_cols=94 Identities=26% Similarity=0.385 Sum_probs=76.9
Q ss_pred cCeeeeccCceEEEEEEC-----CCCEEEEEEeccCCh-hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD-----SGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-----~g~~vAvK~l~~~~~-~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.+.||+|+||.||+|++. +++.||||.+..... ...++|.+|++++++++|+||+++++++........++|||
T Consensus 9 ~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e 88 (284)
T cd05038 9 IKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSLRLIME 88 (284)
T ss_pred heeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCceEEEEe
Confidence 467999999999999863 478999999865433 24678999999999999999999999987743333899999
Q ss_pred cCCCCCHHHHHhcCC-Ccccc
Q 003307 811 YINAQSLAVYLQGKG-LVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~-~l~w~ 830 (832)
|+++|+|.++++... .++|.
T Consensus 89 ~~~~~~l~~~l~~~~~~~~~~ 109 (284)
T cd05038 89 YLPSGSLRDYLQRHRDQINLK 109 (284)
T ss_pred cCCCCCHHHHHHhCccccCHH
Confidence 999999999998654 45553
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut |
| >cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3 | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.4e-09 Score=108.00 Aligned_cols=94 Identities=21% Similarity=0.325 Sum_probs=76.9
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC-----ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG-----IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-----~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.+.||+|+||.||+|.. .+|..||+|++... .....+.+.+|+.++++++||||+++++++........++++|
T Consensus 7 ~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l~~e 86 (266)
T cd06651 7 GKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLTIFME 86 (266)
T ss_pred cceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEEEEEEe
Confidence 67899999999999987 47899999987432 1223456889999999999999999999987643334889999
Q ss_pred cCCCCCHHHHHhcCCCcccc
Q 003307 811 YINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~~l~w~ 830 (832)
|+++|+|.++++....++|+
T Consensus 87 ~~~~~~L~~~l~~~~~l~~~ 106 (266)
T cd06651 87 YMPGGSVKDQLKAYGALTES 106 (266)
T ss_pred CCCCCcHHHHHHHcCCCCHH
Confidence 99999999999877666653
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development |
| >cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.3e-09 Score=109.41 Aligned_cols=86 Identities=14% Similarity=0.275 Sum_probs=75.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|++|.||+|+.. +|+.||+|.+... .....+++.+|++++++++|||++++++++...+. .++||||++
T Consensus 5 ~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~ 82 (256)
T cd08529 5 LNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGK--LNIVMEYAE 82 (256)
T ss_pred eEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCE--EEEEEEeCC
Confidence 567999999999999974 7999999988532 33456789999999999999999999999987776 999999999
Q ss_pred CCCHHHHHhcC
Q 003307 814 AQSLAVYLQGK 824 (832)
Q Consensus 814 ~GsL~~~l~~~ 824 (832)
+++|.++++..
T Consensus 83 ~~~L~~~l~~~ 93 (256)
T cd08529 83 NGDLHKLLKMQ 93 (256)
T ss_pred CCcHHHHHHHh
Confidence 99999999864
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc |
| >cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.1e-09 Score=112.64 Aligned_cols=90 Identities=19% Similarity=0.265 Sum_probs=75.6
Q ss_pred eeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 739 VIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
+||+|+||.||+|+.. +++.||||+++... ....+.+..|+.++.++ +||||+++++++...+. .++|||||+
T Consensus 2 ~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~--~~lv~e~~~ 79 (327)
T cd05617 2 VIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSR--LFLVIEYVN 79 (327)
T ss_pred eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCE--EEEEEeCCC
Confidence 6999999999999974 78999999996432 22345688999999888 69999999999987776 999999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
+|+|.+++...+.++|.
T Consensus 80 ~~~L~~~~~~~~~l~~~ 96 (327)
T cd05617 80 GGDLMFHMQRQRKLPEE 96 (327)
T ss_pred CCcHHHHHHHcCCCCHH
Confidence 99999999877777664
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways |
| >cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.3e-09 Score=112.60 Aligned_cols=90 Identities=24% Similarity=0.379 Sum_probs=73.6
Q ss_pred cCeeeeccCceEEEEEE-CCCC----EEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGS----ILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~----~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.+.||+|+||.||+|++ .+|. .||||.++.. .....++|.+|+.+++.++||||++++|+|.... .++|+|
T Consensus 12 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~~---~~~v~e 88 (316)
T cd05108 12 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST---VQLITQ 88 (316)
T ss_pred eeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCCC---ceeeee
Confidence 67899999999999986 3444 3899998643 2344577999999999999999999999998643 689999
Q ss_pred cCCCCCHHHHHhcCC-Cccc
Q 003307 811 YINAQSLAVYLQGKG-LVLW 829 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~-~l~w 829 (832)
|+++|+|.++++... .++|
T Consensus 89 ~~~~g~l~~~l~~~~~~~~~ 108 (316)
T cd05108 89 LMPFGCLLDYVREHKDNIGS 108 (316)
T ss_pred cCCCCCHHHHHHhccccCCH
Confidence 999999999998643 4444
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor |
| >cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.2e-09 Score=109.74 Aligned_cols=91 Identities=26% Similarity=0.560 Sum_probs=75.8
Q ss_pred cCeeeeccCceEEEEEEC-CC---CEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SG---SILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g---~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|+||.||+|+.. +| ..||||.++.. .....++|..|++++++++||||+++.+++..... .++||||
T Consensus 9 ~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~--~~lv~e~ 86 (269)
T cd05065 9 EEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRP--VMIITEF 86 (269)
T ss_pred EeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCc--eEEEEec
Confidence 678999999999999974 34 36999998654 33345789999999999999999999999987776 8999999
Q ss_pred CCCCCHHHHHhcC-CCccc
Q 003307 812 INAQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~-~~l~w 829 (832)
+++|+|.++++.. +.++|
T Consensus 87 ~~~~~L~~~l~~~~~~~~~ 105 (269)
T cd05065 87 MENGALDSFLRQNDGQFTV 105 (269)
T ss_pred CCCCcHHHHHhhCCCCCCH
Confidence 9999999999754 34555
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr |
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.3e-11 Score=119.51 Aligned_cols=231 Identities=23% Similarity=0.222 Sum_probs=110.2
Q ss_pred CcEEEEEeCCCCCcccc---CcccccCCCCCCEEEcCCCCCccc----CC--------CCCCCCCCCEEECCCCCCCccC
Q 003307 65 GYVTSIMLNDMGLVGNF---SFPTIIGLKMLCNVSVSNNQLMGN----IT--------DIGSIQSLEFLDLSHNLFHGLI 129 (832)
Q Consensus 65 ~~v~~l~l~~~~l~g~~---~~~~~~~l~~L~~L~Ls~n~l~~~----~~--------~~~~l~~L~~L~Ls~N~l~~~~ 129 (832)
..++.|+|+++.+.-.- -...+.+.+.|+..++|+- ++|. +| .+..+++|++||||+|-|....
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 45677777776654210 0234555566666666542 2221 11 1234556666666666654333
Q ss_pred cccc----cCCCCCCEEEccccccccc-------------CCCCCCCCCCCCEeeCcCCCCCCcc----chhhhcCCCCC
Q 003307 130 PSGI----VSLKNLMLLNISSNSFEGT-------------FPSGFGGLGKLKYLDLRANRFGGDI----MHLLSQLGSVV 188 (832)
Q Consensus 130 p~~~----~~l~~L~~L~Ls~N~l~~~-------------~p~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~l~~L~ 188 (832)
+..| ..+..|++|.|.+|.+.-. ...-.+.-++|+++..++|++.... ...|...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 3222 3456666666666655411 0111233445666666666554322 22344445555
Q ss_pred EEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-----Cccccccc
Q 003307 189 HVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-----SFNFVFSL 263 (832)
Q Consensus 189 ~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~l~~L 263 (832)
.+.+..|.+. |.+.. .....+..+++|+.|||..|-++..-. .+..+++|
T Consensus 189 evr~~qN~I~---~eG~~----------------------al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 189 EVRLSQNGIR---PEGVT----------------------ALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred eEEEeccccc---CchhH----------------------HHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence 5555555544 22110 000114455666666666665543111 34555566
Q ss_pred cEEEccccCCCCCCChhhh---hhCCCCCCEEECCCCCCCCccC------ccCCCCCCEEEecCCee
Q 003307 264 RILRLGSNQLSGSLPVALL---QESSMMLSELDLSLNQLEGPVG------SITSATLKKVNLSSNKL 321 (832)
Q Consensus 264 ~~L~L~~N~l~~~~p~~~~---~~~~~~L~~L~L~~N~l~~~~~------~~~~~~L~~L~L~~N~l 321 (832)
+.|++++|.+...-...+. ....+.|+.|.+.+|.++..-. ....+.|..|+|++|.+
T Consensus 244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 6666666666543332221 1234556666666666543111 11123455555555555
|
|
| >PLN00034 mitogen-activated protein kinase kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.3e-09 Score=115.19 Aligned_cols=82 Identities=24% Similarity=0.409 Sum_probs=70.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|+. .+|+.||||++... .....+.|.+|++++++++|+|||++++++...+. .++|||||++
T Consensus 79 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~~ 156 (353)
T PLN00034 79 VNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGE--IQVLLEFMDG 156 (353)
T ss_pred hhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCe--EEEEEecCCC
Confidence 56799999999999997 47999999998543 22335679999999999999999999999987776 9999999999
Q ss_pred CCHHHH
Q 003307 815 QSLAVY 820 (832)
Q Consensus 815 GsL~~~ 820 (832)
|+|.+.
T Consensus 157 ~~L~~~ 162 (353)
T PLN00034 157 GSLEGT 162 (353)
T ss_pred Cccccc
Confidence 998654
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.4e-11 Score=118.25 Aligned_cols=42 Identities=33% Similarity=0.399 Sum_probs=21.9
Q ss_pred CCCCCCCCEeeCcCCCCCCccch----hhhcCCCCCEEECccCcCc
Q 003307 157 FGGLGKLKYLDLRANRFGGDIMH----LLSQLGSVVHVDLSNNQFS 198 (832)
Q Consensus 157 ~~~l~~L~~L~L~~N~l~~~~~~----~l~~l~~L~~L~Ls~N~l~ 198 (832)
+.++++|++||||.|-|...-+. .+..+..|++|.|.+|.+.
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 34455666666666665433222 2344555555555555554
|
|
| >cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.5e-09 Score=108.12 Aligned_cols=91 Identities=22% Similarity=0.354 Sum_probs=77.2
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
...||+|+||.||+|...++..+|||.+..... ...+|.+|++++++++|||++++++++..... .++||||+++|+
T Consensus 9 ~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~--~~~v~e~~~~~~ 85 (256)
T cd05112 9 VQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAM-SEEDFIEEAQVMMKLSHPKLVQLYGVCTERSP--ICLVFEFMEHGC 85 (256)
T ss_pred EeeecCcccceEEEEEEeCCCeEEEEECCCCCC-CHHHHHHHHHHHHhCCCCCeeeEEEEEccCCc--eEEEEEcCCCCc
Confidence 567999999999999987788999998864322 34679999999999999999999999987776 899999999999
Q ss_pred HHHHHhcC-CCcccc
Q 003307 817 LAVYLQGK-GLVLWF 830 (832)
Q Consensus 817 L~~~l~~~-~~l~w~ 830 (832)
|.++++.. ..+.|+
T Consensus 86 L~~~~~~~~~~~~~~ 100 (256)
T cd05112 86 LSDYLRAQRGKFSQE 100 (256)
T ss_pred HHHHHHhCccCCCHH
Confidence 99999864 345554
|
Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ |
| >cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.8e-09 Score=110.31 Aligned_cols=86 Identities=22% Similarity=0.436 Sum_probs=74.7
Q ss_pred cCeeeeccCceEEEEEE------CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL------DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
...||+|+||.||+|+. .++..+|+|.+........+.|.+|++++++++|+||+++++++...+. .++|||
T Consensus 10 ~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e 87 (291)
T cd05094 10 KRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDP--LIMVFE 87 (291)
T ss_pred eeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCc--eEEEEe
Confidence 57899999999999974 2456799999876655556789999999999999999999999988777 999999
Q ss_pred cCCCCCHHHHHhcC
Q 003307 811 YINAQSLAVYLQGK 824 (832)
Q Consensus 811 ~~~~GsL~~~l~~~ 824 (832)
|+++|+|.++++..
T Consensus 88 ~~~~~~L~~~i~~~ 101 (291)
T cd05094 88 YMKHGDLNKFLRAH 101 (291)
T ss_pred cCCCCcHHHHHHhc
Confidence 99999999999754
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n |
| >cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.4e-09 Score=110.45 Aligned_cols=91 Identities=23% Similarity=0.315 Sum_probs=77.8
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+++.. +++.||+|.+.... ....+.+.+|++++++++||||+++++++...+. .++||||+
T Consensus 6 ~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~~v~e~~ 83 (290)
T cd05580 6 IKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSN--LYLVMEYV 83 (290)
T ss_pred EEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCe--EEEEEecC
Confidence 567999999999999974 78999999885421 2234668899999999999999999999988777 99999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.++++..+.+++
T Consensus 84 ~~~~L~~~~~~~~~l~~ 100 (290)
T cd05580 84 PGGELFSHLRKSGRFPE 100 (290)
T ss_pred CCCCHHHHHHHcCCCCH
Confidence 99999999987776664
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi |
| >cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4 | Back alignment and domain information |
|---|
Probab=98.89 E-value=7e-09 Score=108.34 Aligned_cols=92 Identities=29% Similarity=0.368 Sum_probs=78.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh--hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA--KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|+||.||+|+.. ++..||+|.++.... ...+.+.+|++++++++|+||+++++++...+. .++|+||++
T Consensus 5 ~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~--~~lv~e~~~ 82 (264)
T cd06626 5 GNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREK--VYIFMEYCS 82 (264)
T ss_pred eeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCE--EEEEEecCC
Confidence 567999999999999974 789999999864432 356789999999999999999999999887776 999999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
+++|.++++....++|.
T Consensus 83 ~~~L~~~~~~~~~~~~~ 99 (264)
T cd06626 83 GGTLEELLEHGRILDEH 99 (264)
T ss_pred CCcHHHHHhhcCCCChH
Confidence 99999999877655553
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4 |
| >cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2 | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.9e-09 Score=114.59 Aligned_cols=86 Identities=20% Similarity=0.210 Sum_probs=73.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+++.. +++.+|+|.+... .....+.+.+|+++++.++||||+++++++...+. .++|||||
T Consensus 48 ~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~--~~lv~Ey~ 125 (370)
T cd05621 48 VKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKY--LYMVMEYM 125 (370)
T ss_pred EEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCE--EEEEEcCC
Confidence 567999999999999974 7899999998532 12234568899999999999999999999987776 99999999
Q ss_pred CCCCHHHHHhcC
Q 003307 813 NAQSLAVYLQGK 824 (832)
Q Consensus 813 ~~GsL~~~l~~~ 824 (832)
++|+|.+++...
T Consensus 126 ~gg~L~~~l~~~ 137 (370)
T cd05621 126 PGGDLVNLMSNY 137 (370)
T ss_pred CCCcHHHHHHhc
Confidence 999999998754
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found |
| >cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.9e-09 Score=108.57 Aligned_cols=89 Identities=22% Similarity=0.274 Sum_probs=74.0
Q ss_pred eeeeccCceEEEEEE---CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 739 VIGRSCHGTLYKATL---DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~---~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.||+|+||.||+|.+ .++..+|||+++.. .....++|.+|+.++.+++|+||++++|+|.. +. .++||||++
T Consensus 2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~--~~lv~e~~~ 78 (257)
T cd05116 2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICEA-ES--WMLVMELAE 78 (257)
T ss_pred cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CC--cEEEEecCC
Confidence 489999999999975 36789999998543 23345789999999999999999999999854 33 789999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
+|+|.+++...+.++++
T Consensus 79 ~~~L~~~l~~~~~~~~~ 95 (257)
T cd05116 79 LGPLNKFLQKNKHVTEK 95 (257)
T ss_pred CCcHHHHHHhcCCCCHH
Confidence 99999999877666654
|
Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio |
| >cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4 | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.9e-09 Score=109.71 Aligned_cols=87 Identities=23% Similarity=0.407 Sum_probs=73.6
Q ss_pred cCeeeeccCceEEEEEEC------CCCEEEEEEeccCChh-hHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREGIAK-GKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~~~-~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
...||+|+||.||+|+.. +.+.||+|.+...... ..++|.+|++++++++|+||++++++|..... .++||
T Consensus 10 ~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~ 87 (275)
T cd05046 10 ITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEP--HYMIL 87 (275)
T ss_pred eeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCc--ceEEE
Confidence 456999999999999853 3467999988654333 45679999999999999999999999987776 89999
Q ss_pred ecCCCCCHHHHHhcCC
Q 003307 810 NYINAQSLAVYLQGKG 825 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~ 825 (832)
||+++|+|.++++..+
T Consensus 88 e~~~~~~L~~~i~~~~ 103 (275)
T cd05046 88 EYTDLGDLKQFLRATK 103 (275)
T ss_pred EecCCCcHHHHHHhcc
Confidence 9999999999998655
|
Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s |
| >cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.7e-09 Score=110.72 Aligned_cols=92 Identities=15% Similarity=0.191 Sum_probs=78.2
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+++.. +++.||+|.+.... ....+.+.+|+++++.++||||+++++++...+. .++||||+
T Consensus 6 ~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~--~~lv~e~~ 83 (305)
T cd05609 6 IKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRH--LCMVMEYV 83 (305)
T ss_pred eeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCE--EEEEEecC
Confidence 467999999999999974 78999999886432 2234578899999999999999999999987776 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.+++...+.++|.
T Consensus 84 ~g~~L~~~l~~~~~~~~~ 101 (305)
T cd05609 84 EGGDCATLLKNIGALPVD 101 (305)
T ss_pred CCCcHHHHHHHcCCCCHH
Confidence 999999999877766654
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a |
| >cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=98.89 E-value=7e-09 Score=108.62 Aligned_cols=92 Identities=24% Similarity=0.343 Sum_probs=76.9
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCCh---------hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIA---------KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKL 806 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~---------~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~ 806 (832)
...||+|+||.||+|.. .+++.+|+|.+..... ...+.+.+|++++.+++||||+++++++...+. .+
T Consensus 5 ~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~ 82 (267)
T cd06628 5 GALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADH--LN 82 (267)
T ss_pred cceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCc--cE
Confidence 56899999999999987 4789999998853211 112568899999999999999999999988777 99
Q ss_pred EEEecCCCCCHHHHHhcCCCcccc
Q 003307 807 VISNYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 807 lv~e~~~~GsL~~~l~~~~~l~w~ 830 (832)
+|+||+++++|.+++...+.+++.
T Consensus 83 lv~e~~~~~~L~~~l~~~~~l~~~ 106 (267)
T cd06628 83 IFLEYVPGGSVAALLNNYGAFEET 106 (267)
T ss_pred EEEEecCCCCHHHHHHhccCccHH
Confidence 999999999999999877766653
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate |
| >cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.3e-09 Score=109.90 Aligned_cols=86 Identities=22% Similarity=0.412 Sum_probs=75.2
Q ss_pred cCeeeeccCceEEEEEE------CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL------DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
...||+|+||.||++.. .++..+|+|.+........+.|.+|++++++++|+||+++++++..... .++|+|
T Consensus 10 ~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e 87 (280)
T cd05092 10 KWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRP--LLMVFE 87 (280)
T ss_pred ccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCc--eEEEEe
Confidence 56799999999999973 2467899999876655566789999999999999999999999988776 899999
Q ss_pred cCCCCCHHHHHhcC
Q 003307 811 YINAQSLAVYLQGK 824 (832)
Q Consensus 811 ~~~~GsL~~~l~~~ 824 (832)
|+++|+|.++++..
T Consensus 88 ~~~~~~L~~~i~~~ 101 (280)
T cd05092 88 YMRHGDLNRFLRSH 101 (280)
T ss_pred cCCCCCHHHHHHhc
Confidence 99999999999864
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory |
| >PTZ00267 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.5e-09 Score=118.26 Aligned_cols=85 Identities=15% Similarity=0.134 Sum_probs=72.8
Q ss_pred cCeeeeccCceEEEEEEC-C-CCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-S-GSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~-g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||.||+|... + +..||+|.+..........+.+|++++++++|||||+++++|...+. .++||||+++
T Consensus 72 ~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~--~~lv~E~~~g 149 (478)
T PTZ00267 72 TTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDK--LLLIMEYGSG 149 (478)
T ss_pred EEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCE--EEEEEECCCC
Confidence 568999999999999863 4 67899998754444445678899999999999999999999988776 9999999999
Q ss_pred CCHHHHHhc
Q 003307 815 QSLAVYLQG 823 (832)
Q Consensus 815 GsL~~~l~~ 823 (832)
|+|.++|+.
T Consensus 150 g~L~~~l~~ 158 (478)
T PTZ00267 150 GDLNKQIKQ 158 (478)
T ss_pred CCHHHHHHH
Confidence 999998864
|
|
| >cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3 | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.5e-09 Score=110.78 Aligned_cols=85 Identities=26% Similarity=0.352 Sum_probs=74.9
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|+||.||+|+. .+|+.||+|.+........+.+.+|+.+++.++|+|+++++++|...+. .++||||+++|
T Consensus 24 ~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~--~~lv~e~~~~~ 101 (297)
T cd06656 24 FEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDE--LWVVMEYLAGG 101 (297)
T ss_pred eeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCE--EEEeecccCCC
Confidence 57899999999999996 5899999999865444445678999999999999999999999987776 99999999999
Q ss_pred CHHHHHhc
Q 003307 816 SLAVYLQG 823 (832)
Q Consensus 816 sL~~~l~~ 823 (832)
+|.+++++
T Consensus 102 ~L~~~~~~ 109 (297)
T cd06656 102 SLTDVVTE 109 (297)
T ss_pred CHHHHHHh
Confidence 99999865
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.5e-09 Score=108.50 Aligned_cols=87 Identities=21% Similarity=0.237 Sum_probs=73.7
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhh---HHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKG---KKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~---~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
-..+|+|.-|+||.+++. ++..+|+|++.+..... ......|-++|+.+.||-++.||+.+.+.+. .+||||||
T Consensus 82 lk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~--~cl~meyC 159 (459)
T KOG0610|consen 82 LKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKY--SCLVMEYC 159 (459)
T ss_pred HHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccce--eEEEEecC
Confidence 346999999999999985 56899999996543322 2345678889999999999999999998888 99999999
Q ss_pred CCCCHHHHHhcCC
Q 003307 813 NAQSLAVYLQGKG 825 (832)
Q Consensus 813 ~~GsL~~~l~~~~ 825 (832)
+||+|+.+++++.
T Consensus 160 pGGdL~~LrqkQp 172 (459)
T KOG0610|consen 160 PGGDLHSLRQKQP 172 (459)
T ss_pred CCccHHHHHhhCC
Confidence 9999999988654
|
|
| >cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.7e-09 Score=112.24 Aligned_cols=90 Identities=22% Similarity=0.342 Sum_probs=73.8
Q ss_pred eeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhc-CCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 739 VIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGN-IKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~-~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
+||+|+||.||+|+.. +|+.||||.++... ....+.+..|.+++.. .+||||+++++++...+. .++||||++
T Consensus 2 ~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~--~~lv~E~~~ 79 (316)
T cd05620 2 VLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEH--LFFVMEFLN 79 (316)
T ss_pred eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCE--EEEEECCCC
Confidence 6999999999999974 78999999986431 1233456778888875 489999999999987776 999999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
+|+|.+++..++.+++.
T Consensus 80 ~g~L~~~i~~~~~~~~~ 96 (316)
T cd05620 80 GGDLMFHIQDKGRFDLY 96 (316)
T ss_pred CCcHHHHHHHcCCCCHH
Confidence 99999999877666653
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-09 Score=85.71 Aligned_cols=61 Identities=38% Similarity=0.595 Sum_probs=37.3
Q ss_pred CCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCC
Q 003307 113 QSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRF 173 (832)
Q Consensus 113 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 173 (832)
++|++|++++|+|+.+.+..|.++++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3456666666666655555666666666666666666655556666666666666666653
|
... |
| >cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.2e-09 Score=109.92 Aligned_cols=91 Identities=25% Similarity=0.334 Sum_probs=75.5
Q ss_pred cCeeeeccCceEEEEEE------CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATL------DSGSILAVKRLREGI-AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv 808 (832)
.+.||+|+||.||+|.. .++..||||+++... ....+.|.+|+++++++ +||||++++++|...+. .++|
T Consensus 40 ~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~--~~lv 117 (302)
T cd05055 40 GKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGP--ILVI 117 (302)
T ss_pred cceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCc--eEEE
Confidence 67899999999999974 245689999886442 33346799999999999 79999999999988777 9999
Q ss_pred EecCCCCCHHHHHhcCCC--ccc
Q 003307 809 SNYINAQSLAVYLQGKGL--VLW 829 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~~--l~w 829 (832)
|||+++|+|.++++.... ++|
T Consensus 118 ~e~~~~~~L~~~i~~~~~~~l~~ 140 (302)
T cd05055 118 TEYCCYGDLLNFLRRKRESFLTL 140 (302)
T ss_pred EEcCCCCcHHHHHHhCCCCCCCH
Confidence 999999999999986432 555
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.2e-09 Score=121.98 Aligned_cols=85 Identities=26% Similarity=0.350 Sum_probs=74.0
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+.. +|+.||||+++.. .....+.|.+|++++++++|||||+++++|...+. .++|||||
T Consensus 7 i~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~--lyLVMEY~ 84 (932)
T PRK13184 7 IRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDP--VYYTMPYI 84 (932)
T ss_pred EEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCE--EEEEEEcC
Confidence 568999999999999974 7999999998643 22235679999999999999999999999987776 99999999
Q ss_pred CCCCHHHHHhc
Q 003307 813 NAQSLAVYLQG 823 (832)
Q Consensus 813 ~~GsL~~~l~~ 823 (832)
++|+|.++++.
T Consensus 85 eGGSL~~lL~s 95 (932)
T PRK13184 85 EGYTLKSLLKS 95 (932)
T ss_pred CCCCHHHHHHH
Confidence 99999999874
|
|
| >cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.3e-09 Score=108.73 Aligned_cols=90 Identities=28% Similarity=0.369 Sum_probs=76.8
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|+||.||+|... +++.||+|.+.... ...++|.+|++++.+++|+||++++++|...+. .++||||+++|
T Consensus 11 ~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~~ 87 (263)
T cd05052 11 KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP--FYIITEFMTYG 87 (263)
T ss_pred eeecCCcccceEEEEEEecCCceEEEEEecCCc-hHHHHHHHHHHHHHhCCCCChhheEEEEcCCCC--cEEEEEeCCCC
Confidence 678999999999999974 68999999986543 235679999999999999999999999988777 89999999999
Q ss_pred CHHHHHhcCC--Cccc
Q 003307 816 SLAVYLQGKG--LVLW 829 (832)
Q Consensus 816 sL~~~l~~~~--~l~w 829 (832)
+|.+++.... .++|
T Consensus 88 ~L~~~~~~~~~~~l~~ 103 (263)
T cd05052 88 NLLDYLRECNRQEVNA 103 (263)
T ss_pred cHHHHHHhCCCCCCCH
Confidence 9999997543 3555
|
Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays |
| >cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.7e-09 Score=108.94 Aligned_cols=92 Identities=16% Similarity=0.293 Sum_probs=78.2
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|... ++..+|+|.+........+.|.+|++++++++|||+++++++|...+. .++||||+++|
T Consensus 10 ~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~--~~~v~e~~~~~ 87 (282)
T cd06643 10 IGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENN--LWILIEFCAGG 87 (282)
T ss_pred HhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCE--EEEEEEecCCC
Confidence 456999999999999975 688899999865555556779999999999999999999999987776 99999999999
Q ss_pred CHHHHHhc-CCCcccc
Q 003307 816 SLAVYLQG-KGLVLWF 830 (832)
Q Consensus 816 sL~~~l~~-~~~l~w~ 830 (832)
+|.++++. .+.++|.
T Consensus 88 ~l~~~~~~~~~~l~~~ 103 (282)
T cd06643 88 AVDAVMLELERPLTEP 103 (282)
T ss_pred cHHHHHHhcCCCCCHH
Confidence 99998875 3456654
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. |
| >cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.2e-09 Score=108.93 Aligned_cols=89 Identities=20% Similarity=0.285 Sum_probs=74.5
Q ss_pred eeeeccCceEEEEEEC--CCC--EEEEEEeccCCh-hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 739 VIGRSCHGTLYKATLD--SGS--ILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~~--~g~--~vAvK~l~~~~~-~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.||+|++|.||+|... .++ .||||.+..... ...+.|.+|++++++++||||+++++++.. .. .++|+||++
T Consensus 2 ~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~--~~~v~e~~~ 78 (257)
T cd05040 2 KLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HP--LMMVTELAP 78 (257)
T ss_pred cCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC-Ce--EEEEEEecC
Confidence 5899999999999873 333 699999976544 556789999999999999999999999987 55 899999999
Q ss_pred CCCHHHHHhcCC--Ccccc
Q 003307 814 AQSLAVYLQGKG--LVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~--~l~w~ 830 (832)
+|+|.+++.... .++|.
T Consensus 79 ~~~L~~~l~~~~~~~~~~~ 97 (257)
T cd05040 79 LGSLLDRLRKDALGHFLIS 97 (257)
T ss_pred CCcHHHHHHhcccccCcHH
Confidence 999999998654 45553
|
Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and |
| >cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5 | Back alignment and domain information |
|---|
Probab=98.88 E-value=4e-09 Score=111.82 Aligned_cols=91 Identities=21% Similarity=0.306 Sum_probs=74.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+.. +++.||||+++.. .....+.+.+|++++++++||||+++++++...+. .++||||++
T Consensus 6 ~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~ 83 (287)
T cd07848 6 LGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGK--LYLVFEYVE 83 (287)
T ss_pred EEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCE--EEEEEecCC
Confidence 567999999999999985 7899999998543 22234678899999999999999999999987776 999999999
Q ss_pred CCCHHHHHhcCCCccc
Q 003307 814 AQSLAVYLQGKGLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w 829 (832)
+|.+..+......+++
T Consensus 84 ~~~l~~~~~~~~~~~~ 99 (287)
T cd07848 84 KNMLELLEEMPNGVPP 99 (287)
T ss_pred CCHHHHHHhcCCCCCH
Confidence 9877766554444554
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes |
| >cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.87 E-value=9e-09 Score=107.48 Aligned_cols=91 Identities=22% Similarity=0.327 Sum_probs=76.9
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC-----hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI-----AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-----~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.+.||+|++|.||+|.. .+|+.||+|.+.... ....+.+.+|++++++++||||+++++++...+. .++|||
T Consensus 7 ~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~--~~~v~e 84 (263)
T cd06625 7 GKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDET--LSIFME 84 (263)
T ss_pred cceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCe--EEEEEE
Confidence 67899999999999986 478999999875321 1223568999999999999999999999988776 999999
Q ss_pred cCCCCCHHHHHhcCCCccc
Q 003307 811 YINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~~l~w 829 (832)
|+++|+|.+++...+.+++
T Consensus 85 ~~~~~~l~~~~~~~~~~~~ 103 (263)
T cd06625 85 YMPGGSVKDQLKAYGALTE 103 (263)
T ss_pred ECCCCcHHHHHHHhCCCCH
Confidence 9999999999987665554
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t |
| >KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.6e-09 Score=116.23 Aligned_cols=92 Identities=21% Similarity=0.332 Sum_probs=80.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
+..+|.|+-|.|..|+. .+|+.+|||++..+. ........+|+.+|+-+.|||+++|+..+.+..+ .|+|.|||
T Consensus 17 gkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~--lylvlEyv 94 (786)
T KOG0588|consen 17 GKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQH--LYLVLEYV 94 (786)
T ss_pred cccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCce--EEEEEEec
Confidence 67899999999999997 699999999995441 2224568899999999999999999999998887 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|.|+++|-.++++.++
T Consensus 95 ~gGELFdylv~kG~l~e~ 112 (786)
T KOG0588|consen 95 PGGELFDYLVRKGPLPER 112 (786)
T ss_pred CCchhHHHHHhhCCCCCH
Confidence 999999999999887753
|
|
| >cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.5e-09 Score=109.56 Aligned_cols=84 Identities=21% Similarity=0.355 Sum_probs=69.5
Q ss_pred eeeeccCceEEEEEECCC---CEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 739 VIGRSCHGTLYKATLDSG---SILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~~~g---~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.||+|+||.||+|+..++ ..+++|.+... .....+.|.+|++++++++||||++++++|..... .++||||+++
T Consensus 2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~~ 79 (268)
T cd05086 2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIP--YLLVFEYCEL 79 (268)
T ss_pred cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCc--cEEEEecCCC
Confidence 589999999999986333 35667766533 23345789999999999999999999999988777 9999999999
Q ss_pred CCHHHHHhcC
Q 003307 815 QSLAVYLQGK 824 (832)
Q Consensus 815 GsL~~~l~~~ 824 (832)
|+|.+++++.
T Consensus 80 ~~L~~~l~~~ 89 (268)
T cd05086 80 GDLKSYLSQE 89 (268)
T ss_pred CcHHHHHHhh
Confidence 9999999864
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage |
| >cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa | Back alignment and domain information |
|---|
Probab=98.87 E-value=8e-09 Score=107.56 Aligned_cols=88 Identities=18% Similarity=0.294 Sum_probs=71.6
Q ss_pred eeeccCceEEEEEEC---CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 740 IGRSCHGTLYKATLD---SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 740 iG~G~~g~Vy~~~~~---~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
||+|+||.||+|++. ++..||||.+.... ....+.|.+|++++++++|+||++++++|.. +. .++||||+++|
T Consensus 3 ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~-~~--~~lv~e~~~~~ 79 (257)
T cd05115 3 LGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEA-EA--LMLVMEMASGG 79 (257)
T ss_pred cCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcC-CC--eEEEEEeCCCC
Confidence 899999999999863 45679999986543 3335679999999999999999999999853 34 79999999999
Q ss_pred CHHHHHhc-CCCcccc
Q 003307 816 SLAVYLQG-KGLVLWF 830 (832)
Q Consensus 816 sL~~~l~~-~~~l~w~ 830 (832)
+|.++++. +..++|+
T Consensus 80 ~L~~~l~~~~~~~~~~ 95 (257)
T cd05115 80 PLNKFLSGKKDEITVS 95 (257)
T ss_pred CHHHHHHhCCCCCCHH
Confidence 99999975 3445553
|
Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho |
| >cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1 | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.9e-09 Score=110.10 Aligned_cols=86 Identities=24% Similarity=0.346 Sum_probs=74.8
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+. .+|..||+|.+........+.+.+|++++++++|+|++++++++..... .++||||+++|
T Consensus 25 ~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~--~~lv~e~~~~~ 102 (296)
T cd06654 25 FEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDE--LWVVMEYLAGG 102 (296)
T ss_pred EEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCE--EEEeecccCCC
Confidence 56799999999999986 4789999999865444445678999999999999999999999987666 99999999999
Q ss_pred CHHHHHhcC
Q 003307 816 SLAVYLQGK 824 (832)
Q Consensus 816 sL~~~l~~~ 824 (832)
+|.+++++.
T Consensus 103 ~L~~~~~~~ 111 (296)
T cd06654 103 SLTDVVTET 111 (296)
T ss_pred CHHHHHHhc
Confidence 999998753
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3 | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-08 Score=107.31 Aligned_cols=90 Identities=18% Similarity=0.264 Sum_probs=75.7
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||.||+|.. .++..||||...... ....+.|.+|++++.+++||||+++++++...+. .++||||+++
T Consensus 9 ~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~~ 86 (277)
T cd06641 9 LEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTK--LWIIMEYLGG 86 (277)
T ss_pred heeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCe--EEEEEEeCCC
Confidence 56799999999999986 478999999875432 2334678999999999999999999999988777 9999999999
Q ss_pred CCHHHHHhcCCCccc
Q 003307 815 QSLAVYLQGKGLVLW 829 (832)
Q Consensus 815 GsL~~~l~~~~~l~w 829 (832)
|+|.++++.. .++|
T Consensus 87 ~~l~~~i~~~-~~~~ 100 (277)
T cd06641 87 GSALDLLEPG-PLDE 100 (277)
T ss_pred CcHHHHHhcC-CCCH
Confidence 9999998753 3444
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int |
| >KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.1e-10 Score=116.63 Aligned_cols=91 Identities=20% Similarity=0.376 Sum_probs=73.8
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCCh-hhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIA-KGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...+|.|.||.||+|+- .+|..||||+++.... ..+---.+|++.|+++. |||||+|...+.+.+. ..++|||||+
T Consensus 15 i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~-~L~fVfE~Md 93 (538)
T KOG0661|consen 15 IRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDR-ILYFVFEFMD 93 (538)
T ss_pred HHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCc-eEeeeHHhhh
Confidence 45699999999999985 6899999999965432 12233479999999998 9999999999988772 3999999999
Q ss_pred CCCHHHHHhcCC-Cccc
Q 003307 814 AQSLAVYLQGKG-LVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~~~-~l~w 829 (832)
. +|++++++++ .|++
T Consensus 94 ~-NLYqLmK~R~r~fse 109 (538)
T KOG0661|consen 94 C-NLYQLMKDRNRLFSE 109 (538)
T ss_pred h-hHHHHHhhcCCcCCH
Confidence 6 9999998764 3443
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.3e-10 Score=124.41 Aligned_cols=240 Identities=26% Similarity=0.268 Sum_probs=117.4
Q ss_pred CCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeC
Q 003307 89 LKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDL 168 (832)
Q Consensus 89 l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 168 (832)
+..++.+++..|.+......+..+++|+.|++.+|+|..+.. .+..+++|++|+|++|.|+.+ ..+..++.|+.|++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhhee
Confidence 444555555555555433345556666666666666654321 145556666666666666543 23445555666666
Q ss_pred cCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCC
Q 003307 169 RANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNN 248 (832)
Q Consensus 169 ~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 248 (832)
++|.|+.. ..+..+..|+.+++++|.+...-+. . ...+.+|+.+.+.+|.+.... . +..+..+..+++..|
T Consensus 148 ~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~--~-~~~~~~l~~l~l~~n~i~~i~--~--~~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 148 SGNLISDI--SGLESLKSLKLLDLSYNRIVDIEND--E-LSELISLEELDLGGNSIREIE--G--LDLLKKLVLLSLLDN 218 (414)
T ss_pred ccCcchhc--cCCccchhhhcccCCcchhhhhhhh--h-hhhccchHHHhccCCchhccc--c--hHHHHHHHHhhcccc
Confidence 66665422 2233355566666666665522110 0 233455666666666553211 1 223334444455666
Q ss_pred cccccCCCccccc--cccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeeccc--
Q 003307 249 HLVGAIPSFNFVF--SLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGS-- 324 (832)
Q Consensus 249 ~l~~~~~~~~~l~--~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~-- 324 (832)
.++..-+ +..+. .|+.+++++|++. .++..+ .....+..|++..|++...........+..+.+..|.+...
T Consensus 219 ~i~~~~~-l~~~~~~~L~~l~l~~n~i~-~~~~~~--~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (414)
T KOG0531|consen 219 KISKLEG-LNELVMLHLRELYLSGNRIS-RSPEGL--ENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEA 294 (414)
T ss_pred cceeccC-cccchhHHHHHHhcccCccc-cccccc--cccccccccchhhccccccccccccchHHHhccCcchhcchhh
Confidence 5553222 11122 2666666666665 222222 33455666666666665544444444455555555554421
Q ss_pred -C----CCCCCCCCEEecCCCCCcC
Q 003307 325 -L----PARVGHCTIVDLSNNRLSG 344 (832)
Q Consensus 325 -~----p~~l~~l~~L~L~~N~l~~ 344 (832)
. -.....++.+.+..|.+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 295 ISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hhccccccccccccccccccCcccc
Confidence 0 1122344555666665554
|
|
| >cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.3e-09 Score=108.40 Aligned_cols=86 Identities=21% Similarity=0.354 Sum_probs=72.7
Q ss_pred cCeeeeccCceEEEEEEC------CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
.+.||+|+||.||+|... .+..||||++... ......+|.+|+.++.+++||||+++++++..... .++||
T Consensus 11 ~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~--~~lv~ 88 (277)
T cd05062 11 SRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQP--TLVIM 88 (277)
T ss_pred eeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC--eEEEE
Confidence 678999999999999752 3567999998543 23345679999999999999999999999987776 99999
Q ss_pred ecCCCCCHHHHHhcC
Q 003307 810 NYINAQSLAVYLQGK 824 (832)
Q Consensus 810 e~~~~GsL~~~l~~~ 824 (832)
||+++|+|.++++..
T Consensus 89 e~~~~~~L~~~~~~~ 103 (277)
T cd05062 89 ELMTRGDLKSYLRSL 103 (277)
T ss_pred ecCCCCCHHHHHHHc
Confidence 999999999999753
|
Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh |
| >cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3 | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-08 Score=108.06 Aligned_cols=98 Identities=18% Similarity=0.255 Sum_probs=74.8
Q ss_pred chhhhcccccCeeeeccCceEEEEEE-CCCC----EEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCC
Q 003307 728 TAEELSHAPAEVIGRSCHGTLYKATL-DSGS----ILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK 801 (832)
Q Consensus 728 ~~~~l~~~~~~~iG~G~~g~Vy~~~~-~~g~----~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~ 801 (832)
..+|+.. .+.||+|+||.||+|+. .+|. .+|+|.+.... .....++..|+..+++++|||||+++|++.. .
T Consensus 5 ~~~~~~~--~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~-~ 81 (279)
T cd05111 5 KETELRK--LKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICPG-A 81 (279)
T ss_pred CHhhcee--ccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEECC-C
Confidence 3344443 67899999999999997 4555 47778775332 2234678889999999999999999999864 3
Q ss_pred CceEEEEEecCCCCCHHHHHhcC-CCcccc
Q 003307 802 EHEKLVISNYINAQSLAVYLQGK-GLVLWF 830 (832)
Q Consensus 802 ~~~~~lv~e~~~~GsL~~~l~~~-~~l~w~ 830 (832)
. .++++||+++|+|.++++.. +.++|.
T Consensus 82 ~--~~~i~e~~~~gsL~~~l~~~~~~~~~~ 109 (279)
T cd05111 82 S--LQLVTQLSPLGSLLDHVRQHRDSLDPQ 109 (279)
T ss_pred c--cEEEEEeCCCCcHHHHHHhcccCCCHH
Confidence 3 68999999999999999864 456664
|
Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r |
| >cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.4e-09 Score=108.69 Aligned_cols=86 Identities=27% Similarity=0.500 Sum_probs=72.9
Q ss_pred cCeeeeccCceEEEEEEC-CC-----CEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SG-----SILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g-----~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
...||+|+||.||+|... .+ ..||+|.++... ....++|.+|++++.+++||||+++++++...+. .+++|
T Consensus 10 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~--~~~~~ 87 (283)
T cd05048 10 LEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQP--TCMLF 87 (283)
T ss_pred hhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCc--eEEEE
Confidence 567999999999999863 22 579999986432 3335679999999999999999999999987776 89999
Q ss_pred ecCCCCCHHHHHhcC
Q 003307 810 NYINAQSLAVYLQGK 824 (832)
Q Consensus 810 e~~~~GsL~~~l~~~ 824 (832)
||+++|+|.+++...
T Consensus 88 e~~~~~~L~~~l~~~ 102 (283)
T cd05048 88 EYLAHGDLHEFLVRN 102 (283)
T ss_pred ecCCCCcHHHHHHhc
Confidence 999999999999764
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer |
| >cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.5e-09 Score=109.03 Aligned_cols=85 Identities=21% Similarity=0.352 Sum_probs=71.6
Q ss_pred cCeeeeccCceEEEEEEC------CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
...||+|+||.||+|... .+..||||.++... ......|.+|++++++++||||+++++++..... .++||
T Consensus 11 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~--~~lv~ 88 (288)
T cd05061 11 LRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQP--TLVVM 88 (288)
T ss_pred eeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC--cEEEE
Confidence 578999999999999742 24589999885432 2334568899999999999999999999987776 99999
Q ss_pred ecCCCCCHHHHHhc
Q 003307 810 NYINAQSLAVYLQG 823 (832)
Q Consensus 810 e~~~~GsL~~~l~~ 823 (832)
||+++|+|.++++.
T Consensus 89 e~~~~g~L~~~l~~ 102 (288)
T cd05061 89 ELMAHGDLKSYLRS 102 (288)
T ss_pred eCCCCCCHHHHHHH
Confidence 99999999999975
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta |
| >cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5 | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.9e-09 Score=108.67 Aligned_cols=92 Identities=20% Similarity=0.218 Sum_probs=75.8
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|.. .+|+.||+|.+.... ....+.+.+|++++.+++|+|++++.+++...+. .++||||+
T Consensus 5 ~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~--~~lv~e~~ 82 (285)
T cd05632 5 YRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDA--LCLVLTIM 82 (285)
T ss_pred EEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCE--EEEEEEec
Confidence 45799999999999997 489999999985432 1223457889999999999999999999887776 99999999
Q ss_pred CCCCHHHHHhcCC--Ccccc
Q 003307 813 NAQSLAVYLQGKG--LVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~--~l~w~ 830 (832)
++|+|.++++..+ .++|.
T Consensus 83 ~~~~L~~~~~~~~~~~~~~~ 102 (285)
T cd05632 83 NGGDLKFHIYNMGNPGFEEE 102 (285)
T ss_pred cCccHHHHHHHhcCCCCCHH
Confidence 9999999987543 46654
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with |
| >cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7 | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.4e-09 Score=110.40 Aligned_cols=91 Identities=22% Similarity=0.356 Sum_probs=76.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh-----hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA-----KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~-----~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.+.||+|+||.||+|... +|+.||||+++.... .....+..|++++.+++|+||+++++++...+. .++|||
T Consensus 5 ~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~--~~lv~e 82 (298)
T cd07841 5 GKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSN--INLVFE 82 (298)
T ss_pred eeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCE--EEEEEc
Confidence 467999999999999974 789999999854322 234567889999999999999999999988666 999999
Q ss_pred cCCCCCHHHHHhcCC-Ccccc
Q 003307 811 YINAQSLAVYLQGKG-LVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~-~l~w~ 830 (832)
|+ +|+|.++++... .++|.
T Consensus 83 ~~-~~~L~~~i~~~~~~~~~~ 102 (298)
T cd07841 83 FM-ETDLEKVIKDKSIVLTPA 102 (298)
T ss_pred cc-CCCHHHHHhccCCCCCHH
Confidence 99 899999998765 66653
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is |
| >cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-08 Score=108.13 Aligned_cols=93 Identities=22% Similarity=0.324 Sum_probs=74.8
Q ss_pred cCeeeeccCceEEEEEE-----CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-----DSGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-----~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
...||+|+||+||++.+ .++..||+|.++... ....+.|.+|++++++++||||++++++|...+....++|||
T Consensus 9 ~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e 88 (283)
T cd05080 9 IRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLIME 88 (283)
T ss_pred ceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEEEec
Confidence 46799999999988653 368899999986542 234567899999999999999999999987654334899999
Q ss_pred cCCCCCHHHHHhcCCCcccc
Q 003307 811 YINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~~l~w~ 830 (832)
|+++|+|.++++.. .++|.
T Consensus 89 ~~~~~~l~~~~~~~-~l~~~ 107 (283)
T cd05080 89 YVPLGSLRDYLPKH-KLNLA 107 (283)
T ss_pred CCCCCCHHHHHHHc-CCCHH
Confidence 99999999998764 35553
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign |
| >cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-08 Score=106.51 Aligned_cols=93 Identities=25% Similarity=0.402 Sum_probs=76.7
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC-----ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG-----IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-----~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.+.||+|+||.||+|+. .+|..||+|.+... .....+.|.+|++++++++|+||+++++++...+....++|+|
T Consensus 7 ~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~v~e 86 (264)
T cd06653 7 GKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKLSIFVE 86 (264)
T ss_pred eeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEEEEEEE
Confidence 67899999999999997 47999999987421 1233457899999999999999999999987654434789999
Q ss_pred cCCCCCHHHHHhcCCCccc
Q 003307 811 YINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~~l~w 829 (832)
|+++|+|.+++.....+++
T Consensus 87 ~~~~~~L~~~~~~~~~l~~ 105 (264)
T cd06653 87 YMPGGSIKDQLKAYGALTE 105 (264)
T ss_pred eCCCCcHHHHHHHcCCCCH
Confidence 9999999999987665554
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho |
| >cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-08 Score=105.69 Aligned_cols=89 Identities=27% Similarity=0.426 Sum_probs=75.9
Q ss_pred eeeeccCceEEEEEECCCCEEEEEEeccCCh-hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCCH
Q 003307 739 VIGRSCHGTLYKATLDSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQSL 817 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~-~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~GsL 817 (832)
.||+|+||.||+|...+|+.||+|.++.... ...+.|.+|++++++++|+||+++++++..... .++||||+++++|
T Consensus 2 ~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~--~~~v~e~~~~~~l 79 (251)
T cd05041 2 KIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQP--IYIVMELVPGGSL 79 (251)
T ss_pred ccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCC--eEEEEEcCCCCcH
Confidence 5899999999999986699999998865432 245679999999999999999999999988877 9999999999999
Q ss_pred HHHHhcC-CCccc
Q 003307 818 AVYLQGK-GLVLW 829 (832)
Q Consensus 818 ~~~l~~~-~~l~w 829 (832)
.++++.. ..+++
T Consensus 80 ~~~l~~~~~~~~~ 92 (251)
T cd05041 80 LTFLRKKKNRLTV 92 (251)
T ss_pred HHHHHhcCCCCCH
Confidence 9999754 33444
|
Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k |
| >cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.4e-09 Score=108.34 Aligned_cols=87 Identities=20% Similarity=0.371 Sum_probs=74.1
Q ss_pred cCeeeeccCceEEEEEEC------CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
.+.||+|+||.||+|... .+..||+|...... ......|.+|+.++++++|+||+++++++...+. .++||
T Consensus 11 ~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~--~~lv~ 88 (277)
T cd05036 11 LRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLP--RFILL 88 (277)
T ss_pred eeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCC--cEEEE
Confidence 578999999999999873 45789999886432 3345679999999999999999999999987776 89999
Q ss_pred ecCCCCCHHHHHhcCC
Q 003307 810 NYINAQSLAVYLQGKG 825 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~ 825 (832)
||+++|+|.++++..+
T Consensus 89 e~~~g~~L~~~i~~~~ 104 (277)
T cd05036 89 ELMAGGDLKSFLRENR 104 (277)
T ss_pred ecCCCCCHHHHHHHhC
Confidence 9999999999998654
|
Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-10 Score=127.55 Aligned_cols=218 Identities=27% Similarity=0.295 Sum_probs=153.9
Q ss_pred CCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCE
Q 003307 110 GSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVH 189 (832)
Q Consensus 110 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~ 189 (832)
..+..++.+++..|.|.. +-..+..+++|+.|++.+|+|..+ ...+..+++|++|+|++|+|+.+.+ +..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhh
Confidence 456788888899998885 334578889999999999999854 3337889999999999999976544 566777999
Q ss_pred EECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCCCccccccccEEEcc
Q 003307 190 VDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLG 269 (832)
Q Consensus 190 L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~ 269 (832)
|++++|.++ .+..+..++.|+.+++++|.+...-.. . ...+.+|+.+++.+|.+.. +..+..+..+..+++.
T Consensus 145 L~l~~N~i~-----~~~~~~~l~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~~-i~~~~~~~~l~~~~l~ 216 (414)
T KOG0531|consen 145 LNLSGNLIS-----DISGLESLKSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIRE-IEGLDLLKKLVLLSLL 216 (414)
T ss_pred heeccCcch-----hccCCccchhhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCchhc-ccchHHHHHHHHhhcc
Confidence 999999998 445555678999999999998753321 0 2567888999999998873 3334445556666888
Q ss_pred ccCCCCCCChhhhhhCCC--CCCEEECCCCCCCCc-cCccCCCCCCEEEecCCeecccCC-CCCCCCCEEecCCCCCc
Q 003307 270 SNQLSGSLPVALLQESSM--MLSELDLSLNQLEGP-VGSITSATLKKVNLSSNKLSGSLP-ARVGHCTIVDLSNNRLS 343 (832)
Q Consensus 270 ~N~l~~~~p~~~~~~~~~--~L~~L~L~~N~l~~~-~~~~~~~~L~~L~L~~N~l~~~~p-~~l~~l~~L~L~~N~l~ 343 (832)
.|.++..-+... .. .|+.+++++|.+... ........+..+++.+|++...-. .....+..+.+..|.+.
T Consensus 217 ~n~i~~~~~l~~----~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 217 DNKISKLEGLNE----LVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred cccceeccCccc----chhHHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHhccCcchhc
Confidence 888873332211 12 378899999998865 334445678889999998874322 22333444555555554
|
|
| >cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-08 Score=110.76 Aligned_cols=92 Identities=18% Similarity=0.204 Sum_probs=74.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCC-cceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHP-NLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~-niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|+||.||+|+.. +++.||||++... .....+.+..|.+++..++|+ +|+++++++...+. .++||||
T Consensus 5 ~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~--~~lv~E~ 82 (324)
T cd05587 5 LMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDR--LYFVMEY 82 (324)
T ss_pred EEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCE--EEEEEcC
Confidence 467999999999999974 7889999998542 122345688899999999765 57888888887776 9999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
+++|+|.+++...+.++|.
T Consensus 83 ~~~g~L~~~~~~~~~~~~~ 101 (324)
T cd05587 83 VNGGDLMYHIQQVGKFKEP 101 (324)
T ss_pred CCCCcHHHHHHHcCCCCHH
Confidence 9999999999877766653
|
Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory |
| >cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.1e-09 Score=111.07 Aligned_cols=92 Identities=18% Similarity=0.225 Sum_probs=74.9
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
..+||+|+||.||+|+. .+|+.||||++.... ....+.+..|.+++..+. |++|+++.+++...+. .++||||
T Consensus 5 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~--~~lv~Ey 82 (323)
T cd05615 5 LMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDR--LYFVMEY 82 (323)
T ss_pred EEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCE--EEEEEcC
Confidence 56899999999999997 479999999986431 223456788999998885 5678889888887776 9999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
+++|+|.+++...+.++|.
T Consensus 83 ~~~g~L~~~i~~~~~l~~~ 101 (323)
T cd05615 83 VNGGDLMYHIQQVGKFKEP 101 (323)
T ss_pred CCCCcHHHHHHHcCCCCHH
Confidence 9999999999887777664
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a |
| >cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-08 Score=106.80 Aligned_cols=85 Identities=27% Similarity=0.513 Sum_probs=73.8
Q ss_pred CeeeeccCceEEEEEEC-C---CCEEEEEEeccCChh-hHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 738 EVIGRSCHGTLYKATLD-S---GSILAVKRLREGIAK-GKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~-~---g~~vAvK~l~~~~~~-~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
+.||+|+||.||+|+.. . +..||||.+...... ..+.+.+|++.+.+++|+|++++++++..... .++|+||+
T Consensus 1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~--~~lv~e~~ 78 (262)
T cd00192 1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEP--LYLVLEYM 78 (262)
T ss_pred CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCc--eEEEEEec
Confidence 36899999999999974 3 889999998654332 35789999999999999999999999988666 99999999
Q ss_pred CCCCHHHHHhcC
Q 003307 813 NAQSLAVYLQGK 824 (832)
Q Consensus 813 ~~GsL~~~l~~~ 824 (832)
++|+|.++++..
T Consensus 79 ~~~~L~~~l~~~ 90 (262)
T cd00192 79 EGGDLLDYLRKS 90 (262)
T ss_pred cCCcHHHHHhhc
Confidence 999999999875
|
Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan |
| >cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.6e-09 Score=110.19 Aligned_cols=86 Identities=23% Similarity=0.451 Sum_probs=71.9
Q ss_pred cCeeeeccCceEEEEEECC---------------CCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECC
Q 003307 737 AEVIGRSCHGTLYKATLDS---------------GSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGP 800 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~---------------g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~ 800 (832)
.+.||+|+||.||+++... ...||||+++.. .......|.+|++++.+++|+|++++++++...
T Consensus 10 ~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~ 89 (295)
T cd05097 10 KEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLGVCVSD 89 (295)
T ss_pred hhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEcCC
Confidence 5679999999999987531 235899998654 233456799999999999999999999999887
Q ss_pred CCceEEEEEecCCCCCHHHHHhcC
Q 003307 801 KEHEKLVISNYINAQSLAVYLQGK 824 (832)
Q Consensus 801 ~~~~~~lv~e~~~~GsL~~~l~~~ 824 (832)
+. .++||||+++|+|.++++..
T Consensus 90 ~~--~~lv~e~~~~~~L~~~l~~~ 111 (295)
T cd05097 90 DP--LCMITEYMENGDLNQFLSQR 111 (295)
T ss_pred Cc--cEEEEecCCCCcHHHHHHhc
Confidence 77 99999999999999999754
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including |
| >cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2 | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-08 Score=109.67 Aligned_cols=87 Identities=26% Similarity=0.410 Sum_probs=72.9
Q ss_pred cCeeeeccCceEEEEEEC-CCC--EEEEEEeccC-ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGS--ILAVKRLREG-IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~--~vAvK~l~~~-~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|+||.||+|+.. +|. .+|+|+++.. .....+.|.+|++++.++ +|+||+++++++...+. .++|+||
T Consensus 12 ~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~--~~lv~e~ 89 (303)
T cd05088 12 QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGY--LYLAIEY 89 (303)
T ss_pred eeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCC--ceEEEEe
Confidence 578999999999999974 565 4688877543 233456789999999999 89999999999987777 9999999
Q ss_pred CCCCCHHHHHhcCC
Q 003307 812 INAQSLAVYLQGKG 825 (832)
Q Consensus 812 ~~~GsL~~~l~~~~ 825 (832)
+++|+|.++++..+
T Consensus 90 ~~~~~L~~~l~~~~ 103 (303)
T cd05088 90 APHGNLLDFLRKSR 103 (303)
T ss_pred CCCCcHHHHHHhcc
Confidence 99999999998654
|
Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A |
| >KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-09 Score=113.85 Aligned_cols=91 Identities=22% Similarity=0.351 Sum_probs=78.6
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||||.. .+++.||+|.++-. .....++...|+.++..++|+||.+.+|.|..... ..++||||.+
T Consensus 18 ~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~--LwiiMey~~g 95 (467)
T KOG0201|consen 18 LELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTK--LWIIMEYCGG 95 (467)
T ss_pred chhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeeccc--HHHHHHHhcC
Confidence 46799999999999997 58999999999643 23345778899999999999999999999998887 9999999999
Q ss_pred CCHHHHHhcCCCccc
Q 003307 815 QSLAVYLQGKGLVLW 829 (832)
Q Consensus 815 GsL~~~l~~~~~l~w 829 (832)
|++.+.|.....+++
T Consensus 96 Gsv~~lL~~~~~~~E 110 (467)
T KOG0201|consen 96 GSVLDLLKSGNILDE 110 (467)
T ss_pred cchhhhhccCCCCcc
Confidence 999999987665544
|
|
| >KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.7e-09 Score=108.84 Aligned_cols=82 Identities=22% Similarity=0.291 Sum_probs=68.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC--h------------hhHHHHHHHHHHHhcCCCCcceeeeeEEECCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI--A------------KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK 801 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~------------~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~ 801 (832)
...||+|.||+|-+|+. .+|+.||||++.+.. . ...+...+||++|++++|||||+|+.+..++.
T Consensus 102 ~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~LiEvLDDP~ 181 (576)
T KOG0585|consen 102 IKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKLIEVLDDPE 181 (576)
T ss_pred hhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEEEEeecCcc
Confidence 56799999999999996 489999999984321 0 11357889999999999999999999998877
Q ss_pred CceEEEEEecCCCCCHH
Q 003307 802 EHEKLVISNYINAQSLA 818 (832)
Q Consensus 802 ~~~~~lv~e~~~~GsL~ 818 (832)
....|||+|||..|.+.
T Consensus 182 s~~~YlVley~s~G~v~ 198 (576)
T KOG0585|consen 182 SDKLYLVLEYCSKGEVK 198 (576)
T ss_pred cCceEEEEEeccCCccc
Confidence 66699999999998764
|
|
| >cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-08 Score=106.70 Aligned_cols=89 Identities=27% Similarity=0.383 Sum_probs=73.8
Q ss_pred eeeeccCceEEEEEEC--C--CCEEEEEEeccCCh-hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 739 VIGRSCHGTLYKATLD--S--GSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~~--~--g~~vAvK~l~~~~~-~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.||+|+||.||+|++. + +..+|+|.+..... ...+++.+|++++.++.|+|+|++++++.. +. .++||||++
T Consensus 2 ~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~--~~~v~e~~~ 78 (257)
T cd05060 2 ELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCKG-EP--LMLVMELAP 78 (257)
T ss_pred ccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEcC-Cc--eEEEEEeCC
Confidence 5899999999999862 2 37899999864432 345679999999999999999999998864 34 799999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
+|+|.++++....++|.
T Consensus 79 ~~~L~~~l~~~~~~~~~ 95 (257)
T cd05060 79 LGPLLKYLKKRREIPVS 95 (257)
T ss_pred CCcHHHHHHhCCCCCHH
Confidence 99999999887766654
|
Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi |
| >cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.4e-09 Score=111.42 Aligned_cols=90 Identities=20% Similarity=0.327 Sum_probs=71.1
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHH---hcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKL---GNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l---~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
...||+|+||.||+|+. .+|+.||||+++... ....+.+..|++++ ++++||||+++++++...+. .++||
T Consensus 4 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~--~~lv~ 81 (324)
T cd05589 4 LAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDH--VCFVM 81 (324)
T ss_pred EEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCE--EEEEE
Confidence 35799999999999997 479999999986431 12234566666554 67789999999999988777 99999
Q ss_pred ecCCCCCHHHHHhcCCCccc
Q 003307 810 NYINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~~l~w 829 (832)
||+++|+|..++++. .++|
T Consensus 82 E~~~~~~L~~~~~~~-~l~~ 100 (324)
T cd05589 82 EYAAGGDLMMHIHTD-VFSE 100 (324)
T ss_pred cCCCCCcHHHHhhcC-CCCH
Confidence 999999999988753 4554
|
Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved |
| >cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-08 Score=106.79 Aligned_cols=86 Identities=27% Similarity=0.416 Sum_probs=72.0
Q ss_pred CeeeeccCceEEEEEEC-CCC--EEEEEEeccC-ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEecC
Q 003307 738 EVIGRSCHGTLYKATLD-SGS--ILAVKRLREG-IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~-~g~--~vAvK~l~~~-~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
++||+|+||.||+|+.. +|. .+|+|.++.. .....+.|.+|++++.++ +||||++++++|..... .++||||+
T Consensus 1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~--~~lv~e~~ 78 (270)
T cd05047 1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGY--LYLAIEYA 78 (270)
T ss_pred CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCC--ceEEEEeC
Confidence 36899999999999974 554 4688888643 233456789999999999 89999999999988776 89999999
Q ss_pred CCCCHHHHHhcCC
Q 003307 813 NAQSLAVYLQGKG 825 (832)
Q Consensus 813 ~~GsL~~~l~~~~ 825 (832)
++|+|.++++..+
T Consensus 79 ~~~~L~~~i~~~~ 91 (270)
T cd05047 79 PHGNLLDFLRKSR 91 (270)
T ss_pred CCCcHHHHHHhcc
Confidence 9999999998654
|
Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l |
| >cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-08 Score=107.93 Aligned_cols=91 Identities=27% Similarity=0.347 Sum_probs=79.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|+||.||+|... ++..||+|++..... ..+.+.+|++++++++|+|++++++++...+. .++|+||++++
T Consensus 24 ~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~--~~lv~e~~~~~ 100 (286)
T cd06614 24 LEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEILIMKDCKHPNIVDYYDSYLVGDE--LWVVMEYMDGG 100 (286)
T ss_pred hHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCE--EEEEEeccCCC
Confidence 567999999999999985 789999999865433 45678999999999999999999999988776 99999999999
Q ss_pred CHHHHHhcCC-Ccccc
Q 003307 816 SLAVYLQGKG-LVLWF 830 (832)
Q Consensus 816 sL~~~l~~~~-~l~w~ 830 (832)
+|.++++... .++|.
T Consensus 101 ~L~~~l~~~~~~l~~~ 116 (286)
T cd06614 101 SLTDIITQNFVRMNEP 116 (286)
T ss_pred cHHHHHHHhccCCCHH
Confidence 9999998765 66654
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou |
| >cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-08 Score=106.34 Aligned_cols=89 Identities=20% Similarity=0.371 Sum_probs=74.6
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
...||+|+||.||+|..++++.||+|.+..... ..+.|.+|++++++++|+|++++++++. .+. .++||||+++|+
T Consensus 11 ~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~--~~~v~e~~~~~~ 86 (260)
T cd05067 11 VKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSM-SPEAFLAEANLMKQLQHPRLVRLYAVVT-QEP--IYIITEYMENGS 86 (260)
T ss_pred eeeeccCccceEEeeecCCCceEEEEEecCCCC-cHHHHHHHHHHHHhcCCcCeeeEEEEEc-cCC--cEEEEEcCCCCC
Confidence 567999999999999988899999999865432 3467999999999999999999999874 344 899999999999
Q ss_pred HHHHHhcCC--Cccc
Q 003307 817 LAVYLQGKG--LVLW 829 (832)
Q Consensus 817 L~~~l~~~~--~l~w 829 (832)
|.++++... .++|
T Consensus 87 L~~~~~~~~~~~~~~ 101 (260)
T cd05067 87 LVDFLKTPEGIKLTI 101 (260)
T ss_pred HHHHHHhcCCCCCCH
Confidence 999987543 3444
|
Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr |
| >cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3 | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.4e-09 Score=111.36 Aligned_cols=92 Identities=22% Similarity=0.275 Sum_probs=77.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|+||.||+|... +|+.||+|++... .....+.+.+|++++++++||||+++++++...+. .++||||++
T Consensus 6 ~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~ 83 (286)
T cd07846 6 LGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKR--LYLVFEFVD 83 (286)
T ss_pred eeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCe--EEEEEecCC
Confidence 467999999999999985 6899999987532 22235678899999999999999999999987776 999999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
+++|.++.+....++|.
T Consensus 84 ~~~l~~~~~~~~~~~~~ 100 (286)
T cd07846 84 HTVLDDLEKYPNGLDES 100 (286)
T ss_pred ccHHHHHHhccCCCCHH
Confidence 99999988776666664
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI |
| >cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4 | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-08 Score=108.42 Aligned_cols=92 Identities=26% Similarity=0.339 Sum_probs=77.2
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+.. +|+.||+|++.... ....+.|.+|++++++++|+|++++++++...+. .++|||||+
T Consensus 6 ~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~--~~~v~e~~~ 83 (286)
T cd07847 6 LSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRK--LHLVFEYCD 83 (286)
T ss_pred eeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCE--EEEEEeccC
Confidence 467999999999999985 79999999885322 2234568899999999999999999999987776 899999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
++.|..++.....++|+
T Consensus 84 ~~~l~~~~~~~~~~~~~ 100 (286)
T cd07847 84 HTVLNELEKNPRGVPEH 100 (286)
T ss_pred ccHHHHHHhCCCCCCHH
Confidence 99999888766666664
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio |
| >cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-08 Score=106.17 Aligned_cols=90 Identities=27% Similarity=0.416 Sum_probs=74.2
Q ss_pred cCeeeeccCceEEEEEEC-CCC----EEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD-SGS----ILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~----~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.+.||+|+||.||+|+.. +|. .+|+|.+.... .....++.+|++++.+++||||++++++|.. .. .++|+|
T Consensus 12 ~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~--~~~v~e 88 (279)
T cd05057 12 IKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS-SQ--VQLITQ 88 (279)
T ss_pred cceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-Cc--eEEEEe
Confidence 578999999999999963 443 58999886543 3345679999999999999999999999987 44 899999
Q ss_pred cCCCCCHHHHHhcC-CCccc
Q 003307 811 YINAQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 811 ~~~~GsL~~~l~~~-~~l~w 829 (832)
|+++|+|.++++.. ..++|
T Consensus 89 ~~~~g~L~~~l~~~~~~~~~ 108 (279)
T cd05057 89 LMPLGCLLDYVRNHKDNIGS 108 (279)
T ss_pred cCCCCcHHHHHHhccCCCCH
Confidence 99999999999864 34554
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea |
| >cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-08 Score=106.14 Aligned_cols=88 Identities=18% Similarity=0.226 Sum_probs=75.4
Q ss_pred eeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 740 IGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 740 iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
||+|+||.||+|+.. +++.+|+|.+.... ....+.+.+|++++++++||||+++++++..... .++|+||+++|
T Consensus 1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~~ 78 (262)
T cd05572 1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKY--IYMLMEYCLGG 78 (262)
T ss_pred CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCc--cEEEEecCCCC
Confidence 699999999999974 68999999985432 2335679999999999999999999999987777 99999999999
Q ss_pred CHHHHHhcCCCccc
Q 003307 816 SLAVYLQGKGLVLW 829 (832)
Q Consensus 816 sL~~~l~~~~~l~w 829 (832)
+|.+++++...+++
T Consensus 79 ~L~~~l~~~~~l~~ 92 (262)
T cd05572 79 ELWTILRDRGLFDE 92 (262)
T ss_pred cHHHHHhhcCCCCH
Confidence 99999988766554
|
Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi |
| >cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1 | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-08 Score=112.33 Aligned_cols=86 Identities=17% Similarity=0.198 Sum_probs=73.2
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+.. +++.||+|.+... .....+.+.+|++++..++||||+++++++...+. .++|||||
T Consensus 48 ~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~--~~lv~Ey~ 125 (371)
T cd05622 48 VKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRY--LYMVMEYM 125 (371)
T ss_pred EEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCE--EEEEEcCC
Confidence 568999999999999974 7899999998532 12234568899999999999999999999987776 99999999
Q ss_pred CCCCHHHHHhcC
Q 003307 813 NAQSLAVYLQGK 824 (832)
Q Consensus 813 ~~GsL~~~l~~~ 824 (832)
++|+|.++++..
T Consensus 126 ~gg~L~~~~~~~ 137 (371)
T cd05622 126 PGGDLVNLMSNY 137 (371)
T ss_pred CCCcHHHHHHhc
Confidence 999999998754
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an |
| >cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2 | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-08 Score=108.30 Aligned_cols=90 Identities=22% Similarity=0.320 Sum_probs=76.9
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||.|+||.||+|+. .+|+.||+|.+........+.+.+|++++++++|||++++++++...+. .++|+||+++|
T Consensus 24 ~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~~~ 101 (296)
T cd06655 24 YEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDE--LFVVMEYLAGG 101 (296)
T ss_pred EEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCce--EEEEEEecCCC
Confidence 56799999999999986 5899999998865444445678999999999999999999999987776 99999999999
Q ss_pred CHHHHHhcCCCccc
Q 003307 816 SLAVYLQGKGLVLW 829 (832)
Q Consensus 816 sL~~~l~~~~~l~w 829 (832)
+|.+++... .++|
T Consensus 102 ~L~~~~~~~-~l~~ 114 (296)
T cd06655 102 SLTDVVTET-CMDE 114 (296)
T ss_pred cHHHHHHhc-CCCH
Confidence 999988754 3554
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-08 Score=108.37 Aligned_cols=86 Identities=27% Similarity=0.366 Sum_probs=74.6
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|.. .++..||+|.+........+.+.+|+.++++++|||+++++++|...+. .++|+||+++|
T Consensus 24 ~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~--~~lv~e~~~~~ 101 (293)
T cd06647 24 FEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDE--LWVVMEYLAGG 101 (293)
T ss_pred eeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCc--EEEEEecCCCC
Confidence 56799999999999986 4789999999864433345678999999999999999999999988777 99999999999
Q ss_pred CHHHHHhcC
Q 003307 816 SLAVYLQGK 824 (832)
Q Consensus 816 sL~~~l~~~ 824 (832)
+|.+++.+.
T Consensus 102 ~L~~~~~~~ 110 (293)
T cd06647 102 SLTDVVTET 110 (293)
T ss_pred cHHHHHhhc
Confidence 999998754
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi |
| >cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.6e-08 Score=107.16 Aligned_cols=87 Identities=21% Similarity=0.304 Sum_probs=73.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||.|++|.||+|... +++.+|+|.+... .......+.+|++++++++||||++++++|...+....++||||+++
T Consensus 6 ~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~ 85 (287)
T cd06621 6 LSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAMEYCEG 85 (287)
T ss_pred EEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEEEecCC
Confidence 467999999999999984 7899999988643 22345679999999999999999999999976554348999999999
Q ss_pred CCHHHHHhc
Q 003307 815 QSLAVYLQG 823 (832)
Q Consensus 815 GsL~~~l~~ 823 (832)
|+|.++++.
T Consensus 86 ~~L~~~l~~ 94 (287)
T cd06621 86 GSLDSIYKK 94 (287)
T ss_pred CCHHHHHHH
Confidence 999998753
|
Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9 | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-08 Score=105.37 Aligned_cols=86 Identities=17% Similarity=0.286 Sum_probs=74.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.++||+|+||.||.++. .+|..+|+|.+... .....+++.+|++++++++|+||+++++++...+. .++||||++
T Consensus 5 ~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~--~~~~~e~~~ 82 (256)
T cd08221 5 IRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNT--LLIEMEYAN 82 (256)
T ss_pred eeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCe--EEEEEEecC
Confidence 46799999999999986 57899999987532 23445678999999999999999999999988776 999999999
Q ss_pred CCCHHHHHhcC
Q 003307 814 AQSLAVYLQGK 824 (832)
Q Consensus 814 ~GsL~~~l~~~ 824 (832)
+|+|.+++...
T Consensus 83 ~~~L~~~~~~~ 93 (256)
T cd08221 83 GGTLYDKIVRQ 93 (256)
T ss_pred CCcHHHHHHhc
Confidence 99999999765
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa |
| >cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6 | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-08 Score=106.02 Aligned_cols=84 Identities=21% Similarity=0.353 Sum_probs=72.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+. .+|+.||||.++.. .......|.+|++++++++||||+++++++...+. .++|+||+
T Consensus 7 ~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~~v~e~~ 84 (267)
T cd08228 7 EKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNE--LNIVLELA 84 (267)
T ss_pred eeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCe--EEEEEEec
Confidence 56799999999999996 48999999987432 23335678999999999999999999999987776 99999999
Q ss_pred CCCCHHHHHh
Q 003307 813 NAQSLAVYLQ 822 (832)
Q Consensus 813 ~~GsL~~~l~ 822 (832)
++|+|.+++.
T Consensus 85 ~~~~L~~~~~ 94 (267)
T cd08228 85 DAGDLSQMIK 94 (267)
T ss_pred CCCcHHHHHH
Confidence 9999999885
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase |
| >cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2 | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-08 Score=110.66 Aligned_cols=92 Identities=21% Similarity=0.268 Sum_probs=75.9
Q ss_pred cCeeeeccCceEEEEEE----CCCCEEEEEEeccC----ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEE
Q 003307 737 AEVIGRSCHGTLYKATL----DSGSILAVKRLREG----IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLV 807 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~----~~g~~vAvK~l~~~----~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~l 807 (832)
...||+|+||.||+++. .+|+.||+|+++.. .....+.+..|++++.++ +|+||+++++++...+. .++
T Consensus 5 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~--~~l 82 (332)
T cd05614 5 LKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAK--LHL 82 (332)
T ss_pred EEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCE--EEE
Confidence 46799999999999875 36899999998532 122345688999999999 59999999999887766 999
Q ss_pred EEecCCCCCHHHHHhcCCCcccc
Q 003307 808 ISNYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 808 v~e~~~~GsL~~~l~~~~~l~w~ 830 (832)
||||+++|+|.+++..++.+++.
T Consensus 83 v~e~~~~g~L~~~l~~~~~~~~~ 105 (332)
T cd05614 83 ILDYVSGGEMFTHLYQRDNFSED 105 (332)
T ss_pred EEeCCCCCcHHHHHHHcCCCCHH
Confidence 99999999999999887776653
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-08 Score=105.16 Aligned_cols=91 Identities=26% Similarity=0.439 Sum_probs=78.6
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh-hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|++|.||+|+.. +|+.||||++..... ...+.|.+|++.+.+++|+|++++++++...+. .++|+||+++
T Consensus 6 ~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~--~~lv~e~~~~ 83 (264)
T cd06623 6 VKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGE--ISIVLEYMDG 83 (264)
T ss_pred eeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCe--EEEEEEecCC
Confidence 578999999999999985 699999999865432 346789999999999999999999999988776 9999999999
Q ss_pred CCHHHHHhcCCCccc
Q 003307 815 QSLAVYLQGKGLVLW 829 (832)
Q Consensus 815 GsL~~~l~~~~~l~w 829 (832)
|+|.+++.....+++
T Consensus 84 ~~L~~~l~~~~~l~~ 98 (264)
T cd06623 84 GSLADLLKKVGKIPE 98 (264)
T ss_pred CcHHHHHHHcCCCCH
Confidence 999999987655544
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of |
| >cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-08 Score=107.08 Aligned_cols=88 Identities=19% Similarity=0.243 Sum_probs=73.4
Q ss_pred eeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 740 IGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 740 iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
||+|+||+||+|.. .+|+.||+|.+.... ....+.|..|++++++++|||++++++++...+. .++|+||+++|
T Consensus 1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~--~~lv~e~~~~~ 78 (277)
T cd05577 1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDD--LCLVMTLMNGG 78 (277)
T ss_pred CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCe--EEEEEecCCCC
Confidence 69999999999986 479999999885422 2234567889999999999999999999987776 99999999999
Q ss_pred CHHHHHhcCC--Cccc
Q 003307 816 SLAVYLQGKG--LVLW 829 (832)
Q Consensus 816 sL~~~l~~~~--~l~w 829 (832)
+|.++++... .+++
T Consensus 79 ~L~~~l~~~~~~~~~~ 94 (277)
T cd05577 79 DLKYHIYNVGEPGFPE 94 (277)
T ss_pred cHHHHHHHcCcCCCCH
Confidence 9999998655 4544
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of |
| >cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-08 Score=108.12 Aligned_cols=86 Identities=27% Similarity=0.429 Sum_probs=73.8
Q ss_pred cCeeeeccCceEEEEEEC------CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
...||+|+||.||+|... ++..||+|.+.... ....++|.+|++++++++||||++++++|...+. .++|+
T Consensus 10 ~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~--~~lv~ 87 (288)
T cd05050 10 VRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKP--MCLLF 87 (288)
T ss_pred cccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCc--cEEEE
Confidence 567999999999999853 46789999986442 3345679999999999999999999999987776 89999
Q ss_pred ecCCCCCHHHHHhcC
Q 003307 810 NYINAQSLAVYLQGK 824 (832)
Q Consensus 810 e~~~~GsL~~~l~~~ 824 (832)
||+++|+|.++++..
T Consensus 88 e~~~~~~L~~~l~~~ 102 (288)
T cd05050 88 EYMAYGDLNEFLRHR 102 (288)
T ss_pred ecCCCCCHHHHHHHc
Confidence 999999999999754
|
Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M |
| >cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-08 Score=109.42 Aligned_cols=92 Identities=20% Similarity=0.236 Sum_probs=74.7
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
...||+|+||.||+|+.. +++.||||.+.... ....+.+..|.+++..+ +|++|+++++++...+. .++||||
T Consensus 5 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~--~~lv~E~ 82 (323)
T cd05616 5 LMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDR--LYFVMEY 82 (323)
T ss_pred EEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCE--EEEEEcC
Confidence 467999999999999974 78899999986432 22234567788888777 58999999999987776 9999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
+++|+|.+++...+.+++.
T Consensus 83 ~~~g~L~~~~~~~~~~~~~ 101 (323)
T cd05616 83 VNGGDLMYQIQQVGRFKEP 101 (323)
T ss_pred CCCCCHHHHHHHcCCCCHH
Confidence 9999999999877766653
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.9e-09 Score=84.14 Aligned_cols=61 Identities=33% Similarity=0.413 Sum_probs=56.2
Q ss_pred CCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcC
Q 003307 137 KNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQF 197 (832)
Q Consensus 137 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l 197 (832)
++|++|++++|+|+.+.+..|.++++|++|++++|+++...+..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999988888999999999999999999988889999999999999999975
|
... |
| >cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1 | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-08 Score=109.50 Aligned_cols=89 Identities=30% Similarity=0.359 Sum_probs=70.7
Q ss_pred eeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHH-HHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 739 VIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVK-KLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~-~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.||+|+||.||+|+.. +++.||+|++.... ......+..|.. ++..++||||+++++++...+. .++||||++
T Consensus 2 ~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~--~~lv~e~~~ 79 (325)
T cd05602 2 VIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADK--LYFVLDYIN 79 (325)
T ss_pred eeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCe--EEEEEeCCC
Confidence 6999999999999974 78899999985421 122334455544 5678999999999999988777 999999999
Q ss_pred CCCHHHHHhcCCCccc
Q 003307 814 AQSLAVYLQGKGLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w 829 (832)
+|+|.++++..+.+.+
T Consensus 80 ~~~L~~~~~~~~~~~~ 95 (325)
T cd05602 80 GGELFYHLQRERCFLE 95 (325)
T ss_pred CCcHHHHHHhcCCCCH
Confidence 9999999987665543
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt |
| >cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase | Back alignment and domain information |
|---|
Probab=98.82 E-value=2e-08 Score=106.81 Aligned_cols=91 Identities=16% Similarity=0.309 Sum_probs=77.6
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+.. +|..+|+|.+........+.|.+|++++++++|+|++++++++..... .++||||+++|
T Consensus 17 ~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~~ 94 (292)
T cd06644 17 IGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGK--LWIMIEFCPGG 94 (292)
T ss_pred hheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCe--EEEEEecCCCC
Confidence 457999999999999974 689999999876555556789999999999999999999999887776 99999999999
Q ss_pred CHHHHHhc-CCCccc
Q 003307 816 SLAVYLQG-KGLVLW 829 (832)
Q Consensus 816 sL~~~l~~-~~~l~w 829 (832)
+|..++.. ...++|
T Consensus 95 ~l~~~~~~~~~~l~~ 109 (292)
T cd06644 95 AVDAIMLELDRGLTE 109 (292)
T ss_pred cHHHHHHhhcCCCCH
Confidence 99988764 334555
|
Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. |
| >cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.7e-09 Score=109.58 Aligned_cols=92 Identities=20% Similarity=0.264 Sum_probs=77.0
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||.||++... +|..||+|.+... .....+.|.+|++++.+++|+||+++++++...+. .++|+||+++
T Consensus 6 ~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~--~~lv~e~~~~ 83 (286)
T cd06622 6 LDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGA--VYMCMEYMDA 83 (286)
T ss_pred hhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCe--EEEEEeecCC
Confidence 467999999999999975 8999999988543 22334679999999999999999999999987776 9999999999
Q ss_pred CCHHHHHhcC---CCcccc
Q 003307 815 QSLAVYLQGK---GLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~---~~l~w~ 830 (832)
|+|.++++.. ..++|.
T Consensus 84 ~~l~~~~~~~~~~~~~~~~ 102 (286)
T cd06622 84 GSLDKLYAGGVATEGIPED 102 (286)
T ss_pred CCHHHHHHhccccCCCCHH
Confidence 9999998763 245553
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1 | Back alignment and domain information |
|---|
Probab=98.82 E-value=8e-09 Score=108.88 Aligned_cols=90 Identities=19% Similarity=0.292 Sum_probs=75.2
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|... +|..||+|.++.. .....+.+.+|++++++++||||+++++++..... .++||||+++
T Consensus 9 ~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~ 86 (277)
T cd06642 9 LERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTK--LWIIMEYLGG 86 (277)
T ss_pred HHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCc--eEEEEEccCC
Confidence 456999999999999874 7889999988643 23345679999999999999999999999987777 9999999999
Q ss_pred CCHHHHHhcCCCccc
Q 003307 815 QSLAVYLQGKGLVLW 829 (832)
Q Consensus 815 GsL~~~l~~~~~l~w 829 (832)
|+|.++++.. .++|
T Consensus 87 ~~L~~~~~~~-~~~~ 100 (277)
T cd06642 87 GSALDLLKPG-PLEE 100 (277)
T ss_pred CcHHHHhhcC-CCCH
Confidence 9999988653 3444
|
Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 |
| >cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-08 Score=106.99 Aligned_cols=94 Identities=20% Similarity=0.294 Sum_probs=76.1
Q ss_pred cCeeeeccCceEEEEEE-----CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-----DSGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-----~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
-..||+|+||.||++.+ .++..||+|.++... ....+.|.+|++++++++|||++++.++|...+....++|||
T Consensus 9 ~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e 88 (284)
T cd05079 9 IRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIME 88 (284)
T ss_pred ceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceEEEEE
Confidence 45799999999999984 357899999986442 334567999999999999999999999998753333899999
Q ss_pred cCCCCCHHHHHhcCC-Ccccc
Q 003307 811 YINAQSLAVYLQGKG-LVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~-~l~w~ 830 (832)
|+++|+|.+++.+.. .++|.
T Consensus 89 ~~~g~~L~~~l~~~~~~~~~~ 109 (284)
T cd05079 89 FLPSGSLKEYLPRNKNKINLK 109 (284)
T ss_pred ccCCCCHHHHHHhccCCCCHH
Confidence 999999999997643 45553
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a |
| >cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.7e-08 Score=107.04 Aligned_cols=86 Identities=24% Similarity=0.393 Sum_probs=72.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|+.. ++..||+|.++... ......+.+|++++++++||||+++++++...+. .++||||++
T Consensus 10 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~--~~lv~e~~~- 86 (288)
T cd07871 10 LDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERC--LTLVFEYLD- 86 (288)
T ss_pred eeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCe--EEEEEeCCC-
Confidence 568999999999999974 78999999985432 2234567899999999999999999999987766 999999998
Q ss_pred CCHHHHHhcCC
Q 003307 815 QSLAVYLQGKG 825 (832)
Q Consensus 815 GsL~~~l~~~~ 825 (832)
|+|.+++...+
T Consensus 87 ~~l~~~l~~~~ 97 (288)
T cd07871 87 SDLKQYLDNCG 97 (288)
T ss_pred cCHHHHHHhcC
Confidence 59999887544
|
Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament |
| >smart00219 TyrKc Tyrosine kinase, catalytic domain | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-08 Score=105.31 Aligned_cols=91 Identities=27% Similarity=0.468 Sum_probs=76.8
Q ss_pred cCeeeeccCceEEEEEEC-C----CCEEEEEEeccCChh-hHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD-S----GSILAVKRLREGIAK-GKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~----g~~vAvK~l~~~~~~-~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.+.||+|+||.||+|+.. . +..||+|++...... ..+.+..|++.+.+++|+||+++++++...+. .+++||
T Consensus 4 ~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~--~~~i~e 81 (258)
T smart00219 4 GKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEP--LMIVME 81 (258)
T ss_pred cceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCe--eEEEEe
Confidence 467999999999999974 3 388999999654332 46789999999999999999999999988766 999999
Q ss_pred cCCCCCHHHHHhcCCC--ccc
Q 003307 811 YINAQSLAVYLQGKGL--VLW 829 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~~--l~w 829 (832)
|+++|+|.++++.... ++|
T Consensus 82 ~~~~~~l~~~~~~~~~~~~~~ 102 (258)
T smart00219 82 YMEGGDLLDYLRKNRPKELSL 102 (258)
T ss_pred ccCCCCHHHHHHhhhhccCCH
Confidence 9999999999986543 554
|
Phosphotransferases. Tyrosine-specific kinase subfamily. |
| >cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7 | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-08 Score=107.12 Aligned_cols=85 Identities=22% Similarity=0.357 Sum_probs=73.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+. .+|..+|||.+... ......+|.+|++++.+++|+||+++++++...+. .++||||+
T Consensus 7 ~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~--~~~v~e~~ 84 (267)
T cd08229 7 EKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNE--LNIVLELA 84 (267)
T ss_pred hhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCe--EEEEEEec
Confidence 56799999999999996 58999999987532 22335679999999999999999999999987776 99999999
Q ss_pred CCCCHHHHHhc
Q 003307 813 NAQSLAVYLQG 823 (832)
Q Consensus 813 ~~GsL~~~l~~ 823 (832)
++|+|.++++.
T Consensus 85 ~~~~L~~~~~~ 95 (267)
T cd08229 85 DAGDLSRMIKH 95 (267)
T ss_pred CCCCHHHHHHH
Confidence 99999999863
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. |
| >cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.8e-08 Score=104.99 Aligned_cols=89 Identities=20% Similarity=0.370 Sum_probs=74.4
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
...||+|+||.||+|...++..+|+|.+..... ..+.|.+|++++++++|+|++++++++.. .. .++||||+++|+
T Consensus 11 ~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~~-~~--~~lv~e~~~~~~ 86 (260)
T cd05070 11 IKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM-SPESFLEEAQIMKKLRHDKLVQLYAVVSE-EP--IYIVTEYMSKGS 86 (260)
T ss_pred hheeccccCceEEEEEecCCceeEEEEecCCCC-CHHHHHHHHHHHHhcCCCceEEEEeEECC-CC--cEEEEEecCCCc
Confidence 567999999999999988888999999865332 34679999999999999999999998753 44 799999999999
Q ss_pred HHHHHhcCC--Cccc
Q 003307 817 LAVYLQGKG--LVLW 829 (832)
Q Consensus 817 L~~~l~~~~--~l~w 829 (832)
|.+++++.. .++|
T Consensus 87 L~~~~~~~~~~~~~~ 101 (260)
T cd05070 87 LLDFLKDGEGRALKL 101 (260)
T ss_pred HHHHHHhcCCCCCCH
Confidence 999998632 3554
|
Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r |
| >cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-08 Score=105.83 Aligned_cols=84 Identities=23% Similarity=0.487 Sum_probs=71.1
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
...||+|+||.||+|+..+...||+|+++.... ..++|.+|++++++++|+||+++++++.. +. .++||||+++|+
T Consensus 11 ~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~~-~~--~~lv~e~~~~~~ 86 (262)
T cd05071 11 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EP--IYIVTEYMSKGS 86 (262)
T ss_pred eeecCCCCCCcEEEEEecCCceEEEEecccCcc-CHHHHHHHHHHHHhCCCCCcceEEEEECC-CC--cEEEEEcCCCCc
Confidence 567999999999999987667899999864322 34679999999999999999999998743 44 799999999999
Q ss_pred HHHHHhcC
Q 003307 817 LAVYLQGK 824 (832)
Q Consensus 817 L~~~l~~~ 824 (832)
|.++++..
T Consensus 87 L~~~~~~~ 94 (262)
T cd05071 87 LLDFLKGE 94 (262)
T ss_pred HHHHHhhc
Confidence 99999753
|
Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo |
| >cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-08 Score=107.02 Aligned_cols=90 Identities=19% Similarity=0.280 Sum_probs=76.2
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||.|+||.||+|+.. +|+.||+|.+.... ......+.+|++++++++|+|++++++++..... .++|+||+++
T Consensus 6 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~~v~e~~~~ 83 (274)
T cd06609 6 LECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSK--LWIIMEYCGG 83 (274)
T ss_pred hhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCe--EEEEEEeeCC
Confidence 467999999999999974 78999999985432 3345678999999999999999999999987766 9999999999
Q ss_pred CCHHHHHhcCCCccc
Q 003307 815 QSLAVYLQGKGLVLW 829 (832)
Q Consensus 815 GsL~~~l~~~~~l~w 829 (832)
|+|.++++.. .++|
T Consensus 84 ~~L~~~~~~~-~~~~ 97 (274)
T cd06609 84 GSCLDLLKPG-KLDE 97 (274)
T ss_pred CcHHHHHhhc-CCCH
Confidence 9999999865 4444
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) |
| >cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-08 Score=110.22 Aligned_cols=93 Identities=20% Similarity=0.347 Sum_probs=75.1
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC---ceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE---HEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~---~~~~lv~e 810 (832)
...||+|+||.||+|+. .+|..||||++... .......+.+|++++++++||||+++++++..... ...++|||
T Consensus 5 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~lv~e 84 (338)
T cd07859 5 QEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYVVFE 84 (338)
T ss_pred EEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEEEEEe
Confidence 56799999999999997 47999999998642 22234568899999999999999999999865432 13799999
Q ss_pred cCCCCCHHHHHhcCCCcccc
Q 003307 811 YINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~~l~w~ 830 (832)
||+ |+|.+++.....++|.
T Consensus 85 ~~~-~~L~~~l~~~~~~~~~ 103 (338)
T cd07859 85 LME-SDLHQVIKANDDLTPE 103 (338)
T ss_pred cCC-CCHHHHHHhcccCCHH
Confidence 996 6999999877777664
|
Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos |
| >cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-08 Score=105.72 Aligned_cols=84 Identities=21% Similarity=0.382 Sum_probs=72.8
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
.+.||+|+||.||+|...++..+|+|.+.... ...+.|.+|++++++++|+|++++.+++.. .. .+++|||+++|+
T Consensus 11 ~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~--~~~v~e~~~~~~ 86 (260)
T cd05073 11 EKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EP--IYIITEFMAKGS 86 (260)
T ss_pred EeEecCccceEEEEEEecCCccEEEEecCCCh-hHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CC--eEEEEEeCCCCc
Confidence 67899999999999998777889999886432 235679999999999999999999999876 44 899999999999
Q ss_pred HHHHHhcC
Q 003307 817 LAVYLQGK 824 (832)
Q Consensus 817 L~~~l~~~ 824 (832)
|.+++...
T Consensus 87 L~~~~~~~ 94 (260)
T cd05073 87 LLDFLKSD 94 (260)
T ss_pred HHHHHHhC
Confidence 99999764
|
Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa |
| >cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.1e-08 Score=106.42 Aligned_cols=86 Identities=26% Similarity=0.370 Sum_probs=72.0
Q ss_pred cCeeeeccCceEEEEEEC------CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
.+.||+|+||.||+|+.. ....+|+|.+.... ....+.+..|+.++++++||||++++++|...+. .++|+
T Consensus 5 ~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~ 82 (290)
T cd05045 5 GKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGP--LLLIV 82 (290)
T ss_pred cccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCC--cEEEE
Confidence 568999999999999852 23578999886433 2335679999999999999999999999987777 89999
Q ss_pred ecCCCCCHHHHHhcC
Q 003307 810 NYINAQSLAVYLQGK 824 (832)
Q Consensus 810 e~~~~GsL~~~l~~~ 824 (832)
||+++|+|.+++...
T Consensus 83 e~~~~~~L~~~l~~~ 97 (290)
T cd05045 83 EYAKYGSLRSFLRES 97 (290)
T ss_pred EecCCCCHHHHHHhc
Confidence 999999999998753
|
Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi |
| >cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4 | Back alignment and domain information |
|---|
Probab=98.81 E-value=2e-08 Score=105.86 Aligned_cols=85 Identities=19% Similarity=0.339 Sum_probs=73.8
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||.||+|... ++..||+|.+... .......|.+|++++++++|+||+++++++..... .++||||+++
T Consensus 9 ~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~ 86 (277)
T cd06640 9 LERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTK--LWIIMEYLGG 86 (277)
T ss_pred hhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCE--EEEEEecCCC
Confidence 456999999999999974 6899999988643 23345679999999999999999999999988776 9999999999
Q ss_pred CCHHHHHhc
Q 003307 815 QSLAVYLQG 823 (832)
Q Consensus 815 GsL~~~l~~ 823 (832)
|+|.+++..
T Consensus 87 ~~L~~~i~~ 95 (277)
T cd06640 87 GSALDLLRA 95 (277)
T ss_pred CcHHHHHhc
Confidence 999999875
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter |
| >cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1 | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.6e-09 Score=107.36 Aligned_cols=91 Identities=18% Similarity=0.219 Sum_probs=77.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|... +|+.||+|.+.... ....+.+.+|++++++++||||+++++++...+. .++|+||+
T Consensus 5 ~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~ 82 (258)
T cd05578 5 LRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEEN--MYLVVDLL 82 (258)
T ss_pred EEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCe--EEEEEeCC
Confidence 567999999999999975 79999999985432 2345789999999999999999999999987776 99999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++++|.+++.....+++
T Consensus 83 ~~~~L~~~l~~~~~l~~ 99 (258)
T cd05578 83 LGGDLRYHLSQKVKFSE 99 (258)
T ss_pred CCCCHHHHHHhcCCcCH
Confidence 99999999987655554
|
Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. |
| >cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5 | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.9e-08 Score=106.23 Aligned_cols=82 Identities=26% Similarity=0.415 Sum_probs=70.7
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.++||+|+||.||+|+. .+++.||+|.+... .....++|.+|++++.+++||||++++++|...+. .++||||+++
T Consensus 6 ~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~~ 83 (279)
T cd06619 6 QEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENR--ISICTEFMDG 83 (279)
T ss_pred eeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCE--EEEEEecCCC
Confidence 46799999999999986 58899999988543 23345679999999999999999999999988776 8999999999
Q ss_pred CCHHHH
Q 003307 815 QSLAVY 820 (832)
Q Consensus 815 GsL~~~ 820 (832)
|+|..+
T Consensus 84 ~~l~~~ 89 (279)
T cd06619 84 GSLDVY 89 (279)
T ss_pred CChHHh
Confidence 999765
|
Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p |
| >cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6 | Back alignment and domain information |
|---|
Probab=98.80 E-value=2e-08 Score=106.26 Aligned_cols=86 Identities=20% Similarity=0.257 Sum_probs=72.7
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
..+||+|+||.||+|... +++.||||.+.... ....+.+.+|+.++.+++|++++++++++...+. .++||||+
T Consensus 5 ~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~--~~lv~e~~ 82 (285)
T cd05630 5 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDA--LCLVLTLM 82 (285)
T ss_pred eEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCE--EEEEEEec
Confidence 457999999999999974 89999999885432 2223557889999999999999999999987776 99999999
Q ss_pred CCCCHHHHHhcC
Q 003307 813 NAQSLAVYLQGK 824 (832)
Q Consensus 813 ~~GsL~~~l~~~ 824 (832)
++|+|.++++..
T Consensus 83 ~g~~L~~~l~~~ 94 (285)
T cd05630 83 NGGDLKFHIYHM 94 (285)
T ss_pred CCCcHHHHHHHh
Confidence 999999998653
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as |
| >cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7 | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.1e-08 Score=104.93 Aligned_cols=85 Identities=21% Similarity=0.369 Sum_probs=73.6
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|... +|+.||+|.++.. .....+.+.+|++++++++|+|++++++++...+. .++||||+
T Consensus 7 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~--~~lv~e~~ 84 (267)
T cd08224 7 EKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNE--LNIVLELA 84 (267)
T ss_pred eeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCe--EEEEEecC
Confidence 578999999999999985 8999999987532 22335679999999999999999999999988776 99999999
Q ss_pred CCCCHHHHHhc
Q 003307 813 NAQSLAVYLQG 823 (832)
Q Consensus 813 ~~GsL~~~l~~ 823 (832)
++|+|.+++..
T Consensus 85 ~~~~L~~~l~~ 95 (267)
T cd08224 85 DAGDLSRMIKH 95 (267)
T ss_pred CCCCHHHHHHH
Confidence 99999999863
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a |
| >KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.1e-09 Score=108.63 Aligned_cols=92 Identities=27% Similarity=0.407 Sum_probs=75.2
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
++++|+|.||+||-|.. ++|+.||||++++. ....+.+..+|+.+|.+++||.||.|...|.+++. +++|||-+.
T Consensus 569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~er--vFVVMEKl~ 646 (888)
T KOG4236|consen 569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPER--VFVVMEKLH 646 (888)
T ss_pred HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCce--EEEEehhhc
Confidence 78999999999999987 58999999999653 23345779999999999999999999999999888 999999997
Q ss_pred CCCHHHHHh-cCCCcccc
Q 003307 814 AQSLAVYLQ-GKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~-~~~~l~w~ 830 (832)
+-=|+-.|. ++++++++
T Consensus 647 GDMLEMILSsEkgRL~er 664 (888)
T KOG4236|consen 647 GDMLEMILSSEKGRLPER 664 (888)
T ss_pred chHHHHHHHhhcccchHH
Confidence 544444443 45666553
|
|
| >cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.3e-08 Score=112.35 Aligned_cols=93 Identities=22% Similarity=0.221 Sum_probs=75.8
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC---ceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE---HEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~---~~~~lv~e 810 (832)
...||+|+||.||+|+. .+|+.||||++... .....+.+.+|+++++.++|+||+++++++...+. ...++|+|
T Consensus 5 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e 84 (372)
T cd07853 5 DRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIYVVTE 84 (372)
T ss_pred cceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEEEEee
Confidence 57899999999999997 48999999998542 22334678899999999999999999999976651 13899999
Q ss_pred cCCCCCHHHHHhcCCCcccc
Q 003307 811 YINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~~l~w~ 830 (832)
|++ ++|.+++...+.+++.
T Consensus 85 ~~~-~~l~~~~~~~~~l~~~ 103 (372)
T cd07853 85 LMQ-SDLHKIIVSPQPLSSD 103 (372)
T ss_pred ccc-cCHHHHHhcCCCCCHH
Confidence 998 5899988877766653
|
Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription |
| >cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=98.80 E-value=2e-08 Score=107.37 Aligned_cols=85 Identities=24% Similarity=0.360 Sum_probs=71.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||.||+|+.. +|+.||||+++... ......+.+|++++++++||||+++++++...+. .++|||||+
T Consensus 10 ~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~--~~lv~e~~~- 86 (303)
T cd07869 10 LEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKET--LTLVFEYVH- 86 (303)
T ss_pred eeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCe--EEEEEECCC-
Confidence 567999999999999975 79999999986432 2223467889999999999999999999988776 999999997
Q ss_pred CCHHHHHhcC
Q 003307 815 QSLAVYLQGK 824 (832)
Q Consensus 815 GsL~~~l~~~ 824 (832)
|+|.+++...
T Consensus 87 ~~l~~~~~~~ 96 (303)
T cd07869 87 TDLCQYMDKH 96 (303)
T ss_pred cCHHHHHHhC
Confidence 6888887653
|
Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an |
| >cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-08 Score=105.76 Aligned_cols=91 Identities=21% Similarity=0.275 Sum_probs=73.9
Q ss_pred cCeeeeccCceEEEEEECC----CCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLDS----GSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~----g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
...||+|+||.||+|...+ ...||||...... ....+.|.+|+.++++++||||++++++|... . .++||||
T Consensus 11 ~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~-~--~~lv~e~ 87 (270)
T cd05056 11 GRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITEN-P--VWIVMEL 87 (270)
T ss_pred eeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcCC-C--cEEEEEc
Confidence 6789999999999998632 2468999886543 34456899999999999999999999998753 3 6899999
Q ss_pred CCCCCHHHHHhcCC-Ccccc
Q 003307 812 INAQSLAVYLQGKG-LVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~-~l~w~ 830 (832)
+++|+|.+++.... .++|.
T Consensus 88 ~~~~~L~~~l~~~~~~~~~~ 107 (270)
T cd05056 88 APLGELRSYLQVNKYSLDLA 107 (270)
T ss_pred CCCCcHHHHHHhCCCCCCHH
Confidence 99999999998643 45553
|
Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions |
| >cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2 | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-08 Score=107.72 Aligned_cols=86 Identities=23% Similarity=0.425 Sum_probs=72.8
Q ss_pred cCeeeeccCceEEEEEEC-----------------CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-----------------SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYW 798 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-----------------~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~ 798 (832)
.+.||+|+||.||++... ++..||||++... .......|.+|++++.+++|+||+++++++.
T Consensus 10 ~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~ 89 (296)
T cd05095 10 KEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRLLAVCI 89 (296)
T ss_pred eeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEe
Confidence 678999999999998532 3457999998643 3334568999999999999999999999998
Q ss_pred CCCCceEEEEEecCCCCCHHHHHhcC
Q 003307 799 GPKEHEKLVISNYINAQSLAVYLQGK 824 (832)
Q Consensus 799 ~~~~~~~~lv~e~~~~GsL~~~l~~~ 824 (832)
..+. .++||||+++|+|.++++..
T Consensus 90 ~~~~--~~lv~e~~~~~~L~~~l~~~ 113 (296)
T cd05095 90 TSDP--LCMITEYMENGDLNQFLSRH 113 (296)
T ss_pred cCCc--cEEEEEeCCCCcHHHHHHhc
Confidence 8777 99999999999999999764
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit |
| >cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1 | Back alignment and domain information |
|---|
Probab=98.79 E-value=2e-08 Score=107.54 Aligned_cols=86 Identities=26% Similarity=0.385 Sum_probs=72.5
Q ss_pred cCeeeeccCceEEEEEEC--------CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEE
Q 003307 737 AEVIGRSCHGTLYKATLD--------SGSILAVKRLREG-IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKL 806 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~--------~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~ 806 (832)
.+.||+|+||.||+++.. ++..+|+|.++.. ......++.+|++++.++ +||||++++++|...+. .+
T Consensus 23 ~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~--~~ 100 (307)
T cd05098 23 GKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGP--LY 100 (307)
T ss_pred eeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCc--eE
Confidence 678999999999999741 2357999998643 233456788999999999 79999999999988777 99
Q ss_pred EEEecCCCCCHHHHHhcC
Q 003307 807 VISNYINAQSLAVYLQGK 824 (832)
Q Consensus 807 lv~e~~~~GsL~~~l~~~ 824 (832)
+||||+++|+|.++++.+
T Consensus 101 lv~e~~~~~~L~~~i~~~ 118 (307)
T cd05098 101 VIVEYASKGNLREYLRAR 118 (307)
T ss_pred EEEecCCCCcHHHHHHhc
Confidence 999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-08 Score=115.97 Aligned_cols=87 Identities=21% Similarity=0.269 Sum_probs=72.8
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCC-CCcceeeee-EEECC---C-CceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIK-HPNLVSLQG-YYWGP---K-EHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~-H~niv~l~g-~~~~~---~-~~~~~lv~ 809 (832)
+++|.+|||+.||.|... .|..||+|++-.......+...+||++|++++ |+|||.+++ ..... . ..+++|.|
T Consensus 42 ~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~EvllLm 121 (738)
T KOG1989|consen 42 EKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWEVLLLM 121 (738)
T ss_pred EEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeEEEeeh
Confidence 678999999999999985 44999999986556667788999999999997 999999999 33221 2 13689999
Q ss_pred ecCCCCCHHHHHhc
Q 003307 810 NYINAQSLAVYLQG 823 (832)
Q Consensus 810 e~~~~GsL~~~l~~ 823 (832)
|||++|+|-|++..
T Consensus 122 EyC~gg~Lvd~mn~ 135 (738)
T KOG1989|consen 122 EYCKGGSLVDFMNT 135 (738)
T ss_pred hhccCCcHHHHHHH
Confidence 99999999999874
|
|
| >cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2 | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.6e-08 Score=103.94 Aligned_cols=87 Identities=29% Similarity=0.439 Sum_probs=72.8
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.+|+|+||.||++.. .+|..||+|.+... .....+.+..|++++++++|+|++++++++...+....+++|||++
T Consensus 5 ~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~e~~~ 84 (265)
T cd08217 5 LETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVMEYCE 84 (265)
T ss_pred eeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEehhcc
Confidence 46799999999999986 47899999988532 3334567889999999999999999999887544434799999999
Q ss_pred CCCHHHHHhc
Q 003307 814 AQSLAVYLQG 823 (832)
Q Consensus 814 ~GsL~~~l~~ 823 (832)
+|+|.+++..
T Consensus 85 ~~~L~~~l~~ 94 (265)
T cd08217 85 GGDLAQLIQK 94 (265)
T ss_pred CCCHHHHHHH
Confidence 9999999975
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi |
| >cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2 | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.8e-08 Score=104.81 Aligned_cols=90 Identities=23% Similarity=0.359 Sum_probs=73.7
Q ss_pred cCeeeeccCceEEEEEE-CCCC----EEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGS----ILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~----~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.+.||+|+||.||+|+. ++|. .||||.++.. .....+++.+|+.++.+++|+||++++++|.... .++++|
T Consensus 12 ~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~---~~l~~~ 88 (279)
T cd05109 12 VKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLTST---VQLVTQ 88 (279)
T ss_pred eeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCCC---cEEEEE
Confidence 57899999999999985 4565 4899988643 3334577999999999999999999999997543 689999
Q ss_pred cCCCCCHHHHHhcC-CCccc
Q 003307 811 YINAQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 811 ~~~~GsL~~~l~~~-~~l~w 829 (832)
|+++|+|.++++.. +.++|
T Consensus 89 ~~~~g~l~~~l~~~~~~~~~ 108 (279)
T cd05109 89 LMPYGCLLDYVRENKDRIGS 108 (279)
T ss_pred cCCCCCHHHHHhhccCCCCH
Confidence 99999999999864 34555
|
Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve |
| >cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase) | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-08 Score=106.21 Aligned_cols=87 Identities=17% Similarity=0.243 Sum_probs=72.8
Q ss_pred cCeeeeccCceEEEEEECC-----CCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLDS-----GSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~-----g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.++||+|+||.||+|.... +..||+|++... .....+.+.+|+.++.+++|+||+++++++...+. ..++++|
T Consensus 11 ~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~-~~~~~~~ 89 (280)
T cd05043 11 SDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGE-PPFVLYP 89 (280)
T ss_pred eeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCC-CCEEEEE
Confidence 6789999999999999754 688999988643 23345678999999999999999999999876422 3899999
Q ss_pred cCCCCCHHHHHhcC
Q 003307 811 YINAQSLAVYLQGK 824 (832)
Q Consensus 811 ~~~~GsL~~~l~~~ 824 (832)
|+++|+|.+++...
T Consensus 90 ~~~~~~L~~~l~~~ 103 (280)
T cd05043 90 YMNWGNLKLFLQQC 103 (280)
T ss_pred cCCCCcHHHHHHhc
Confidence 99999999999753
|
Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It |
| >cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.1e-08 Score=102.75 Aligned_cols=92 Identities=26% Similarity=0.375 Sum_probs=79.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh--hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA--KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|++|.||+|+.. +|+.||||.+..... ...+.+.+|++++++++|+|++++++++...+. .++|+||++
T Consensus 5 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~--~~~v~e~~~ 82 (254)
T cd06627 5 GDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDS--LYIILEYAE 82 (254)
T ss_pred eeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCE--EEEEEecCC
Confidence 568999999999999874 788999999865432 345679999999999999999999999987766 999999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
+++|.+++.....++|.
T Consensus 83 ~~~L~~~~~~~~~l~~~ 99 (254)
T cd06627 83 NGSLRQIIKKFGPFPES 99 (254)
T ss_pred CCcHHHHHHhccCCCHH
Confidence 99999999877766664
|
Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast |
| >cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2 | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.1e-08 Score=104.16 Aligned_cols=90 Identities=21% Similarity=0.331 Sum_probs=77.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|... ++..+|+|.+..... .++|.+|++++++++|+|++++++++...+. .++++||++++
T Consensus 8 ~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~--~~l~~e~~~~~ 83 (256)
T cd06612 8 LEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED--LQEIIKEISILKQCDSPYIVKYYGSYFKNTD--LWIVMEYCGAG 83 (256)
T ss_pred hhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH--HHHHHHHHHHHHhCCCCcEeeeeeeeecCCc--EEEEEecCCCC
Confidence 567999999999999985 589999999864322 5789999999999999999999999988777 99999999999
Q ss_pred CHHHHHhcC-CCcccc
Q 003307 816 SLAVYLQGK-GLVLWF 830 (832)
Q Consensus 816 sL~~~l~~~-~~l~w~ 830 (832)
+|.++++.. ..++|.
T Consensus 84 ~L~~~l~~~~~~l~~~ 99 (256)
T cd06612 84 SVSDIMKITNKTLTEE 99 (256)
T ss_pred cHHHHHHhCccCCCHH
Confidence 999999753 345553
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a |
| >cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1 | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.7e-08 Score=103.41 Aligned_cols=87 Identities=22% Similarity=0.352 Sum_probs=74.7
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|+||.||++.. .+|+.||+|++... .....+++.+|++++++++||||+++++++...+. .++||||++
T Consensus 5 ~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~--~~lv~e~~~ 82 (256)
T cd08218 5 VKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGN--LYIVMDYCE 82 (256)
T ss_pred EEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCe--EEEEEecCC
Confidence 56799999999999987 47899999988532 23345679999999999999999999999987776 999999999
Q ss_pred CCCHHHHHhcCC
Q 003307 814 AQSLAVYLQGKG 825 (832)
Q Consensus 814 ~GsL~~~l~~~~ 825 (832)
+|+|.++++...
T Consensus 83 ~~~l~~~~~~~~ 94 (256)
T cd08218 83 GGDLYKKINAQR 94 (256)
T ss_pred CCcHHHHHHhcc
Confidence 999999997643
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti |
| >cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-08 Score=106.57 Aligned_cols=88 Identities=22% Similarity=0.322 Sum_probs=75.3
Q ss_pred eeeccCceEEEEEEC-CCCEEEEEEeccCCh---hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 740 IGRSCHGTLYKATLD-SGSILAVKRLREGIA---KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 740 iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
||+|+||.||+++.. +|+.+|+|.+..... ...+.+.+|++++.+++||||+++++++..... .++||||+++|
T Consensus 1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~--~~lv~e~~~~~ 78 (265)
T cd05579 1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKN--LYLVMEYLPGG 78 (265)
T ss_pred CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcE--EEEEEecCCCC
Confidence 689999999999985 699999999854322 345678999999999999999999999887766 99999999999
Q ss_pred CHHHHHhcCCCccc
Q 003307 816 SLAVYLQGKGLVLW 829 (832)
Q Consensus 816 sL~~~l~~~~~l~w 829 (832)
+|.++++..+.+++
T Consensus 79 ~L~~~l~~~~~~~~ 92 (265)
T cd05579 79 DLASLLENVGSLDE 92 (265)
T ss_pred cHHHHHHHcCCCCH
Confidence 99999987666654
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re |
| >cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.5e-08 Score=103.55 Aligned_cols=92 Identities=25% Similarity=0.398 Sum_probs=79.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECC--CCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGP--KEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~--~~~~~~lv~e~ 811 (832)
.+.||+|++|.||+|... +|..|++|++.... ....+.+.+|++++++++|+||+++++++... .. .++|+||
T Consensus 5 ~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~--~~lv~e~ 82 (260)
T cd06606 5 GELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNT--LNIFLEY 82 (260)
T ss_pred eeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCe--EEEEEEe
Confidence 567999999999999985 79999999985433 23467899999999999999999999999877 55 9999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
+++++|.+++.....++|.
T Consensus 83 ~~~~~L~~~~~~~~~~~~~ 101 (260)
T cd06606 83 VSGGSLSSLLKKFGKLPEP 101 (260)
T ss_pred cCCCcHHHHHHHcCCCCHH
Confidence 9999999999877666664
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK |
| >cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.1e-08 Score=106.75 Aligned_cols=87 Identities=26% Similarity=0.390 Sum_probs=73.5
Q ss_pred cCeeeeccCceEEEEEEC-----------------CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-----------------SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYW 798 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-----------------~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~ 798 (832)
...||+|+||.||+|+.. .+..||+|++... .....++|.+|++++.+++|||+++++++|.
T Consensus 10 ~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~ 89 (296)
T cd05051 10 VEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARLLGVCT 89 (296)
T ss_pred cccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeEEEEEEe
Confidence 578999999999999863 1246899998644 3344678999999999999999999999998
Q ss_pred CCCCceEEEEEecCCCCCHHHHHhcCC
Q 003307 799 GPKEHEKLVISNYINAQSLAVYLQGKG 825 (832)
Q Consensus 799 ~~~~~~~~lv~e~~~~GsL~~~l~~~~ 825 (832)
..+. .++|+||+++|+|.++++...
T Consensus 90 ~~~~--~~lv~e~~~~~~L~~~l~~~~ 114 (296)
T cd05051 90 VDPP--LCMIMEYMENGDLNQFLQKHV 114 (296)
T ss_pred cCCC--cEEEEecCCCCCHHHHHHhcc
Confidence 8776 999999999999999997654
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke |
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.3e-08 Score=118.33 Aligned_cols=87 Identities=16% Similarity=0.294 Sum_probs=73.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|... ++..||+|.+... .......|..|+.++.+++|||||++++++........++||||++
T Consensus 18 l~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~lyIVMEY~~ 97 (1021)
T PTZ00266 18 IKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKLYILMEFCD 97 (1021)
T ss_pred EEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEEEEEEeCCC
Confidence 567999999999999974 7889999988532 2334567999999999999999999999886554334899999999
Q ss_pred CCCHHHHHhc
Q 003307 814 AQSLAVYLQG 823 (832)
Q Consensus 814 ~GsL~~~l~~ 823 (832)
+|+|.++|+.
T Consensus 98 gGSL~~lL~k 107 (1021)
T PTZ00266 98 AGDLSRNIQK 107 (1021)
T ss_pred CCcHHHHHHH
Confidence 9999999975
|
|
| >cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.7e-08 Score=104.76 Aligned_cols=91 Identities=22% Similarity=0.382 Sum_probs=75.7
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCC---CCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG-IAKGKKEFAREVKKLGNIK---HPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~---H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|+||.||+|+. .+|+.||||.++.. .....+++.+|++++++++ |||+++++++|..... .++||||
T Consensus 6 ~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~--~~lv~e~ 83 (277)
T cd06917 6 LELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPR--LWIIMEY 83 (277)
T ss_pred hhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCE--EEEEEec
Confidence 46799999999999997 58999999988543 2334567889999999987 9999999999987666 9999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
+++|+|.++++.. .++|.
T Consensus 84 ~~~~~L~~~~~~~-~l~~~ 101 (277)
T cd06917 84 AEGGSVRTLMKAG-PIAEK 101 (277)
T ss_pred CCCCcHHHHHHcc-CCCHH
Confidence 9999999998654 55553
|
Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent |
| >cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.8e-08 Score=103.68 Aligned_cols=91 Identities=24% Similarity=0.358 Sum_probs=77.9
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|.. .+++.+|+|.+........+.+.+|++++++++||||+++++++...+. .+++|||++++
T Consensus 8 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~--~~l~~e~~~~~ 85 (262)
T cd06613 8 IQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDK--LWIVMEYCGGG 85 (262)
T ss_pred EEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCE--EEEEEeCCCCC
Confidence 56799999999999997 4788999999865544456789999999999999999999999987776 99999999999
Q ss_pred CHHHHHhcC-CCccc
Q 003307 816 SLAVYLQGK-GLVLW 829 (832)
Q Consensus 816 sL~~~l~~~-~~l~w 829 (832)
+|.++++.. ..+++
T Consensus 86 ~l~~~~~~~~~~l~~ 100 (262)
T cd06613 86 SLQDIYQVTRGPLSE 100 (262)
T ss_pred cHHHHHHhhccCCCH
Confidence 999998765 45544
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ |
| >cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.1e-08 Score=118.40 Aligned_cols=91 Identities=18% Similarity=0.191 Sum_probs=77.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+.. +|+.||||+++... ......+.+|++++..++||||+++++++..... .++|||||
T Consensus 9 ~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~--~~lVmEy~ 86 (669)
T cd05610 9 VKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANN--VYLVMEYL 86 (669)
T ss_pred EEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCE--EEEEEeCC
Confidence 567999999999999975 78999999986432 2234678999999999999999999999887776 99999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.++++..+.+++
T Consensus 87 ~g~~L~~li~~~~~l~~ 103 (669)
T cd05610 87 IGGDVKSLLHIYGYFDE 103 (669)
T ss_pred CCCCHHHHHHhcCCCCH
Confidence 99999999987665554
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481 |
| >cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.9e-08 Score=103.58 Aligned_cols=86 Identities=27% Similarity=0.400 Sum_probs=70.0
Q ss_pred CeeeeccCceEEEEEEC----CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 738 EVIGRSCHGTLYKATLD----SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
++||+|+||.||+|... ++..||+|++... .....+.|.+|+.++++++|||+++++++|...+. ..++|+||+
T Consensus 1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~-~~~lv~e~~ 79 (262)
T cd05058 1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEG-SPLVVLPYM 79 (262)
T ss_pred CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCC-CcEEEEecC
Confidence 36899999999999852 3457999988542 33445678999999999999999999998864332 378999999
Q ss_pred CCCCHHHHHhcC
Q 003307 813 NAQSLAVYLQGK 824 (832)
Q Consensus 813 ~~GsL~~~l~~~ 824 (832)
++|+|.+++++.
T Consensus 80 ~~~~L~~~~~~~ 91 (262)
T cd05058 80 KHGDLRNFIRSE 91 (262)
T ss_pred CCCCHHHHHHhc
Confidence 999999999764
|
Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca |
| >cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase | Back alignment and domain information |
|---|
Probab=98.77 E-value=3e-08 Score=104.99 Aligned_cols=90 Identities=21% Similarity=0.269 Sum_probs=76.8
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|++|.||+|.. .+++.+|+|+++.......+.+.+|+.++++++|+|++++++++...+. .++|+||++++
T Consensus 24 ~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~--~~~v~e~~~~~ 101 (285)
T cd06648 24 FVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDE--LWVVMEFLEGG 101 (285)
T ss_pred ceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCe--EEEEEeccCCC
Confidence 45799999999999996 4789999999865444445678999999999999999999999987776 99999999999
Q ss_pred CHHHHHhcCCCccc
Q 003307 816 SLAVYLQGKGLVLW 829 (832)
Q Consensus 816 sL~~~l~~~~~l~w 829 (832)
+|.+++.. +++++
T Consensus 102 ~L~~~~~~-~~~~~ 114 (285)
T cd06648 102 ALTDIVTH-TRMNE 114 (285)
T ss_pred CHHHHHHh-CCCCH
Confidence 99999876 44444
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun |
| >cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1 | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.3e-08 Score=106.56 Aligned_cols=87 Identities=25% Similarity=0.393 Sum_probs=72.6
Q ss_pred cCeeeeccCceEEEEEEC-CCC--EEEEEEeccC-ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGS--ILAVKRLREG-IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~--~vAvK~l~~~-~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
..+||+|+||.||+|... +|. .+|+|.++.. .....+.|.+|++++.++ +||||+++++++..... .++|+||
T Consensus 7 ~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~--~~lv~e~ 84 (297)
T cd05089 7 EDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGY--LYIAIEY 84 (297)
T ss_pred eeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCc--ceEEEEe
Confidence 678999999999999874 443 4788888642 333456799999999999 79999999999987776 9999999
Q ss_pred CCCCCHHHHHhcCC
Q 003307 812 INAQSLAVYLQGKG 825 (832)
Q Consensus 812 ~~~GsL~~~l~~~~ 825 (832)
+++|+|.+++++.+
T Consensus 85 ~~~~~L~~~l~~~~ 98 (297)
T cd05089 85 APYGNLLDFLRKSR 98 (297)
T ss_pred cCCCcHHHHHHhcc
Confidence 99999999998643
|
Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. |
| >cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.8e-08 Score=104.33 Aligned_cols=93 Identities=17% Similarity=0.294 Sum_probs=74.7
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCC----ceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKE----HEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~----~~~~lv~e 810 (832)
.+.||+|+||.||+|... +++.||+|++.... .....+..|++++.++ +|+|+++++++|...+. ...++|||
T Consensus 11 ~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e 89 (272)
T cd06637 11 VELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVME 89 (272)
T ss_pred HHheeecCCeEEEEEEEcCCCcEEEEEEEEcCC-ccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCcEEEEEEE
Confidence 567999999999999974 78999999985432 2346788999999998 79999999999875321 23789999
Q ss_pred cCCCCCHHHHHhcC--CCcccc
Q 003307 811 YINAQSLAVYLQGK--GLVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~--~~l~w~ 830 (832)
|+++|+|.+++... ..++|.
T Consensus 90 ~~~~~~L~~~l~~~~~~~l~~~ 111 (272)
T cd06637 90 FCGAGSVTDLIKNTKGNTLKEE 111 (272)
T ss_pred cCCCCcHHHHHHhccCCCCCHH
Confidence 99999999999863 346654
|
Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ |
| >cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5 | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.7e-08 Score=107.23 Aligned_cols=89 Identities=20% Similarity=0.251 Sum_probs=76.0
Q ss_pred CeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 738 EVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
..||+|+||.||++.. .++..||||.+........+.+.+|+.++++++|+||+++++++...+. .++||||+++|+
T Consensus 28 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~--~~lv~e~~~~~~ 105 (292)
T cd06658 28 IKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDE--LWVVMEFLEGGA 105 (292)
T ss_pred hcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCe--EEEEEeCCCCCc
Confidence 4699999999999987 4789999999865544456679999999999999999999999988777 999999999999
Q ss_pred HHHHHhcCCCccc
Q 003307 817 LAVYLQGKGLVLW 829 (832)
Q Consensus 817 L~~~l~~~~~l~w 829 (832)
|.+++... .++|
T Consensus 106 L~~~~~~~-~l~~ 117 (292)
T cd06658 106 LTDIVTHT-RMNE 117 (292)
T ss_pred HHHHHhcC-CCCH
Confidence 99988643 3444
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express |
| >cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5 | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.8e-08 Score=104.81 Aligned_cols=91 Identities=21% Similarity=0.315 Sum_probs=75.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|+||.||+|... +|..+|+|.+... .....+.+.+|++++++++|+|++++++++..... .++||||++
T Consensus 5 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~--~~lv~e~~~ 82 (257)
T cd08225 5 IKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGR--LFIVMEYCD 82 (257)
T ss_pred EEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCe--EEEEEecCC
Confidence 567999999999999974 7899999988532 12234678899999999999999999999987776 999999999
Q ss_pred CCCHHHHHhcCC--Cccc
Q 003307 814 AQSLAVYLQGKG--LVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~~~--~l~w 829 (832)
+++|.+++.... .++|
T Consensus 83 ~~~L~~~~~~~~~~~~~~ 100 (257)
T cd08225 83 GGDLMKRINRQRGVLFSE 100 (257)
T ss_pred CCcHHHHHHhccCCCCCH
Confidence 999999997643 3454
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. |
| >cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.7e-08 Score=106.47 Aligned_cols=87 Identities=25% Similarity=0.418 Sum_probs=73.1
Q ss_pred cCeeeeccCceEEEEEE--------CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEE
Q 003307 737 AEVIGRSCHGTLYKATL--------DSGSILAVKRLREG-IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKL 806 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~--------~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~ 806 (832)
...||+|+||.||+|+. .++..||+|.++.. .....+++.+|++++.++ +||||+++++++..... .+
T Consensus 20 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~--~~ 97 (304)
T cd05101 20 GKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGP--LY 97 (304)
T ss_pred cceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecCCc--eE
Confidence 67899999999999974 13457999998643 233456799999999999 89999999999988777 99
Q ss_pred EEEecCCCCCHHHHHhcCC
Q 003307 807 VISNYINAQSLAVYLQGKG 825 (832)
Q Consensus 807 lv~e~~~~GsL~~~l~~~~ 825 (832)
+||||+++|+|.++++..+
T Consensus 98 lv~e~~~~~~L~~~l~~~~ 116 (304)
T cd05101 98 VIVEYASKGNLREYLRARR 116 (304)
T ss_pred EEEecCCCCcHHHHHHhcC
Confidence 9999999999999998643
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4 | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.5e-08 Score=105.92 Aligned_cols=89 Identities=21% Similarity=0.291 Sum_probs=75.6
Q ss_pred CeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 738 EVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
..||+|+||.||++.. .+|..||||++..........+.+|+.++++++|+|++++++++...+. .++||||+++|+
T Consensus 26 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~~~~ 103 (292)
T cd06657 26 IKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDE--LWVVMEFLEGGA 103 (292)
T ss_pred HHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCE--EEEEEecCCCCc
Confidence 3599999999999987 4899999999865444456679999999999999999999999988777 999999999999
Q ss_pred HHHHHhcCCCccc
Q 003307 817 LAVYLQGKGLVLW 829 (832)
Q Consensus 817 L~~~l~~~~~l~w 829 (832)
|.+++... .++|
T Consensus 104 L~~~~~~~-~~~~ 115 (292)
T cd06657 104 LTDIVTHT-RMNE 115 (292)
T ss_pred HHHHHhcC-CCCH
Confidence 99987543 3444
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo |
| >cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-08 Score=106.58 Aligned_cols=84 Identities=31% Similarity=0.531 Sum_probs=70.9
Q ss_pred CeeeeccCceEEEEEECC-------CCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 738 EVIGRSCHGTLYKATLDS-------GSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~~-------g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
+.||+|+||.||+|+..+ ++.+|||.+.... .....+|.+|+.++++++||||++++++|...+. .++||
T Consensus 1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~~v~ 78 (269)
T cd05044 1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEP--QYIIM 78 (269)
T ss_pred CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCC--eEEEE
Confidence 368999999999998631 2579999875432 2345679999999999999999999999988777 99999
Q ss_pred ecCCCCCHHHHHhc
Q 003307 810 NYINAQSLAVYLQG 823 (832)
Q Consensus 810 e~~~~GsL~~~l~~ 823 (832)
||+++|+|.++++.
T Consensus 79 e~~~~~~L~~~l~~ 92 (269)
T cd05044 79 ELMEGGDLLSYLRD 92 (269)
T ss_pred eccCCCcHHHHHHH
Confidence 99999999999975
|
Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male |
| >cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.6e-08 Score=102.77 Aligned_cols=89 Identities=19% Similarity=0.393 Sum_probs=73.2
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
...||+|+||.||+|....+..+|+|.+..... ..+.|.+|++++++++|+|++++++++. .+. .++||||+++|+
T Consensus 11 ~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~--~~~v~e~~~~~~ 86 (260)
T cd05069 11 DVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTM-MPEAFLQEAQIMKKLRHDKLVPLYAVVS-EEP--IYIVTEFMGKGS 86 (260)
T ss_pred eeeecCcCCCeEEEEEEcCCceEEEEEcccCCc-cHHHHHHHHHHHHhCCCCCeeeEEEEEc-CCC--cEEEEEcCCCCC
Confidence 567999999999999987667899998854332 3467899999999999999999999875 344 799999999999
Q ss_pred HHHHHhcCC--Cccc
Q 003307 817 LAVYLQGKG--LVLW 829 (832)
Q Consensus 817 L~~~l~~~~--~l~w 829 (832)
|.++++... .++|
T Consensus 87 L~~~~~~~~~~~~~~ 101 (260)
T cd05069 87 LLDFLKEGDGKYLKL 101 (260)
T ss_pred HHHHHhhCCCCCCCH
Confidence 999997643 3454
|
Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an |
| >PLN03224 probable serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.5e-08 Score=113.67 Aligned_cols=88 Identities=15% Similarity=0.233 Sum_probs=64.8
Q ss_pred cCeeeeccCceEEEEEE-----------------CCCCEEEEEEeccCChhhHHH--------------HHHHHHHHhcC
Q 003307 737 AEVIGRSCHGTLYKATL-----------------DSGSILAVKRLREGIAKGKKE--------------FAREVKKLGNI 785 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-----------------~~g~~vAvK~l~~~~~~~~~~--------------f~~e~~~l~~~ 785 (832)
.++||+|+||.||+|.+ .+++.||||++........++ +..|+.++.++
T Consensus 150 ~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE~~~l~~l 229 (507)
T PLN03224 150 RDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVEAYMCAKI 229 (507)
T ss_pred eeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHHHHHHHHh
Confidence 78899999999999964 245789999986433222233 44577778888
Q ss_pred CCCcc-----eeeeeEEECCC------CceEEEEEecCCCCCHHHHHhcC
Q 003307 786 KHPNL-----VSLQGYYWGPK------EHEKLVISNYINAQSLAVYLQGK 824 (832)
Q Consensus 786 ~H~ni-----v~l~g~~~~~~------~~~~~lv~e~~~~GsL~~~l~~~ 824 (832)
+|.++ ++++|||.... ..+.+||||||++|+|.++|++.
T Consensus 230 ~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~ 279 (507)
T PLN03224 230 KRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGK 279 (507)
T ss_pred hcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhc
Confidence 77665 67888876421 12389999999999999999864
|
|
| >KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.8e-09 Score=112.13 Aligned_cols=85 Identities=24% Similarity=0.370 Sum_probs=73.8
Q ss_pred CeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 738 EVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
..||+|+.|.||.|.- .+++.||||++........+-..+|+.+|+..+|+|||.++..|...++ .++|||||++|+
T Consensus 279 ~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~de--LWVVMEym~ggs 356 (550)
T KOG0578|consen 279 KKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDE--LWVVMEYMEGGS 356 (550)
T ss_pred hhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccce--eEEEEeecCCCc
Confidence 4699999999999985 6899999999976544445668899999999999999999999888777 999999999999
Q ss_pred HHHHHhcC
Q 003307 817 LAVYLQGK 824 (832)
Q Consensus 817 L~~~l~~~ 824 (832)
|.|.+.+.
T Consensus 357 LTDvVt~~ 364 (550)
T KOG0578|consen 357 LTDVVTKT 364 (550)
T ss_pred hhhhhhcc
Confidence 99887543
|
|
| >PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-08 Score=105.07 Aligned_cols=91 Identities=27% Similarity=0.408 Sum_probs=75.6
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhh--HHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKG--KKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~--~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|+||.||+++.. +++.+|+|.+....... .....+|++++.+++||||+++++++...+. .++||||++
T Consensus 4 ~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~--~~~v~~~~~ 81 (260)
T PF00069_consen 4 VKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNY--LYIVMEYCP 81 (260)
T ss_dssp EEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSE--EEEEEEEET
T ss_pred eEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhcccccccccccccccccccccc--ccccccccc
Confidence 467999999999999985 67799999997654322 2234669999999999999999999988766 999999999
Q ss_pred CCCHHHHHhcCCCccc
Q 003307 814 AQSLAVYLQGKGLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w 829 (832)
+|+|.+++...+.+++
T Consensus 82 ~~~L~~~l~~~~~~~~ 97 (260)
T PF00069_consen 82 GGSLQDYLQKNKPLSE 97 (260)
T ss_dssp TEBHHHHHHHHSSBBH
T ss_pred cccccccccccccccc
Confidence 9999999985555554
|
Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A .... |
| >cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.3e-08 Score=103.38 Aligned_cols=91 Identities=23% Similarity=0.320 Sum_probs=76.8
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|.. .++..+|+|++.... ....+.+.+|++.++.++|+|++++++.+...+. .++|+||+++
T Consensus 6 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~--~~iv~e~~~~ 83 (267)
T cd06610 6 IEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDE--LWLVMPYLSG 83 (267)
T ss_pred eeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCE--EEEEEeccCC
Confidence 56799999999999996 478899999985432 2345779999999999999999999999987766 9999999999
Q ss_pred CCHHHHHhcC---CCccc
Q 003307 815 QSLAVYLQGK---GLVLW 829 (832)
Q Consensus 815 GsL~~~l~~~---~~l~w 829 (832)
|+|.++++.. ..++|
T Consensus 84 ~~l~~~~~~~~~~~~~~~ 101 (267)
T cd06610 84 GSLLDIMKSSYPRGGLDE 101 (267)
T ss_pred CcHHHHHHHhcccCCCCH
Confidence 9999999764 33554
|
Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 |
| >cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1 | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.5e-08 Score=105.90 Aligned_cols=92 Identities=26% Similarity=0.325 Sum_probs=76.0
Q ss_pred cCeeeeccCceEEEEEE----CCCCEEEEEEeccCC----hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEE
Q 003307 737 AEVIGRSCHGTLYKATL----DSGSILAVKRLREGI----AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLV 807 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~----~~g~~vAvK~l~~~~----~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~l 807 (832)
...||+|+||.||+++. ++|..||+|+++... ....+.+.+|++++.++ +|+||+++++++..... .++
T Consensus 5 ~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~--~~l 82 (290)
T cd05613 5 LKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTK--LHL 82 (290)
T ss_pred eeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCe--EEE
Confidence 46799999999999985 478999999986432 12346688999999999 59999999998877666 899
Q ss_pred EEecCCCCCHHHHHhcCCCcccc
Q 003307 808 ISNYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 808 v~e~~~~GsL~~~l~~~~~l~w~ 830 (832)
||||+++|+|.+++.....+++.
T Consensus 83 v~e~~~~~~L~~~l~~~~~l~~~ 105 (290)
T cd05613 83 ILDYINGGELFTHLSQRERFKEQ 105 (290)
T ss_pred EEecCCCCcHHHHHHHcCCCCHH
Confidence 99999999999999877666553
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >cd05122 PKc_STE Catalytic domain of STE family Protein Kinases | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.2e-08 Score=101.44 Aligned_cols=92 Identities=26% Similarity=0.391 Sum_probs=79.7
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|++|.||++... +|..+|+|++........+.+.+|++.+++++|+|++++++++..... .++++||++++
T Consensus 5 ~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~--~~l~~e~~~~~ 82 (253)
T cd05122 5 LEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDE--LWIVMEFCSGG 82 (253)
T ss_pred eeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCe--EEEEEecCCCC
Confidence 567999999999999985 789999999966544456789999999999999999999999987766 99999999999
Q ss_pred CHHHHHhcC-CCcccc
Q 003307 816 SLAVYLQGK-GLVLWF 830 (832)
Q Consensus 816 sL~~~l~~~-~~l~w~ 830 (832)
+|.+++... +.++|.
T Consensus 83 ~L~~~~~~~~~~~~~~ 98 (253)
T cd05122 83 SLKDLLKSTNQTLTES 98 (253)
T ss_pred cHHHHHhhcCCCCCHH
Confidence 999999875 456654
|
Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core |
| >cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.8e-08 Score=107.71 Aligned_cols=89 Identities=21% Similarity=0.245 Sum_probs=71.5
Q ss_pred eeeccCceEEEEEEC-CCCEEEEEEeccCCh---hhHHHHHHHHHHHhcC---CCCcceeeeeEEECCCCceEEEEEecC
Q 003307 740 IGRSCHGTLYKATLD-SGSILAVKRLREGIA---KGKKEFAREVKKLGNI---KHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 740 iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~e~~~l~~~---~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
||+|+||.||+|+.. +|+.||||++..... .....+..|..++.+. +||||+++++++...+. .++||||+
T Consensus 1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~--~~lv~e~~ 78 (330)
T cd05586 1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSD--LYLVTDYM 78 (330)
T ss_pred CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCe--EEEEEcCC
Confidence 699999999999974 799999999853211 1223456677777665 69999999999988777 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.+++...+.+++.
T Consensus 79 ~~g~L~~~l~~~~~~~~~ 96 (330)
T cd05586 79 SGGELFWHLQKEGRFSED 96 (330)
T ss_pred CCChHHHHHHhcCCCCHH
Confidence 999999999887776653
|
Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of |
| >cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.1e-08 Score=104.89 Aligned_cols=86 Identities=27% Similarity=0.394 Sum_probs=69.9
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCC---CceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPK---EHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~---~~~~~lv~e~ 811 (832)
...||+|+||.||+|+. .+|+.+|+|.++... ....++.+|+.++.++ +||||++++++|...+ ....++||||
T Consensus 23 ~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~ 101 (286)
T cd06638 23 IETIGKGTYGKVFKVLNKKNGSKAAVKILDPIH-DIDEEIEAEYNILKALSDHPNVVKFYGMYYKKDVKNGDQLWLVLEL 101 (286)
T ss_pred eeeeccCCCcEEEEEEECCCCceeEEEeecccc-chHHHHHHHHHHHHHHhcCCCeeeeeeeeeecccCCCCeEEEEEee
Confidence 56799999999999987 478999999885432 2246688999999999 6999999999985321 1238999999
Q ss_pred CCCCCHHHHHhc
Q 003307 812 INAQSLAVYLQG 823 (832)
Q Consensus 812 ~~~GsL~~~l~~ 823 (832)
+++|+|.++++.
T Consensus 102 ~~~~~L~~~l~~ 113 (286)
T cd06638 102 CNGGSVTDLVKG 113 (286)
T ss_pred cCCCCHHHHHHH
Confidence 999999998863
|
Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear |
| >cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6 | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.3e-08 Score=106.61 Aligned_cols=89 Identities=20% Similarity=0.227 Sum_probs=75.0
Q ss_pred CeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 738 EVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
..||+|+||.||+|.. .+|+.||||.++.......+.+.+|+.++..++|||++++++++...+. .++|+||+++|+
T Consensus 27 ~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~--~~iv~e~~~~~~ 104 (297)
T cd06659 27 IKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEE--LWVLMEFLQGGA 104 (297)
T ss_pred hhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeCCe--EEEEEecCCCCC
Confidence 4699999999999987 4789999999865444445678999999999999999999999987776 999999999999
Q ss_pred HHHHHhcCCCccc
Q 003307 817 LAVYLQGKGLVLW 829 (832)
Q Consensus 817 L~~~l~~~~~l~w 829 (832)
|.+++... .++|
T Consensus 105 L~~~~~~~-~~~~ 116 (297)
T cd06659 105 LTDIVSQT-RLNE 116 (297)
T ss_pred HHHHHhhc-CCCH
Confidence 99987653 3444
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i |
| >cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3 | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.2e-08 Score=101.23 Aligned_cols=85 Identities=19% Similarity=0.286 Sum_probs=73.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||.||+++.. ++..+|+|.++.. .....+.+.+|++++++++|+|++++++++...+. .++||||+++
T Consensus 5 ~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~ 82 (255)
T cd08219 5 LRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGH--LYIVMEYCDG 82 (255)
T ss_pred EEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCE--EEEEEeeCCC
Confidence 467999999999999974 7899999988532 23345678899999999999999999999987776 9999999999
Q ss_pred CCHHHHHhc
Q 003307 815 QSLAVYLQG 823 (832)
Q Consensus 815 GsL~~~l~~ 823 (832)
|+|.+++..
T Consensus 83 ~~l~~~~~~ 91 (255)
T cd08219 83 GDLMQKIKL 91 (255)
T ss_pred CcHHHHHHh
Confidence 999999875
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati |
| >cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.7e-08 Score=103.70 Aligned_cols=86 Identities=20% Similarity=0.356 Sum_probs=73.2
Q ss_pred cCeeeeccCceEEEEEEC------CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
.+.||+|+||.||+|... .+..||+|.+... .......|.+|+.++.+++||||+++++++..... .++||
T Consensus 11 ~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~--~~~v~ 88 (277)
T cd05032 11 IRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQP--TLVVM 88 (277)
T ss_pred EeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCC--cEEEE
Confidence 578999999999999863 2368999998644 23345678999999999999999999999988777 99999
Q ss_pred ecCCCCCHHHHHhcC
Q 003307 810 NYINAQSLAVYLQGK 824 (832)
Q Consensus 810 e~~~~GsL~~~l~~~ 824 (832)
||+++|+|.++++..
T Consensus 89 e~~~~~~L~~~l~~~ 103 (277)
T cd05032 89 ELMAKGDLKSYLRSR 103 (277)
T ss_pred ecCCCCCHHHHHHhc
Confidence 999999999999753
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological |
| >cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4 | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.4e-08 Score=105.56 Aligned_cols=90 Identities=27% Similarity=0.427 Sum_probs=72.0
Q ss_pred cCeeeeccCceEEEEEE-CCCC----EEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGS----ILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~----~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
...||+|+||.||+|+. .+|. .||+|.+.... .....+|.+|+.++++++||||++++|+|.... .++++|
T Consensus 12 ~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~---~~~v~e 88 (303)
T cd05110 12 VKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPT---IQLVTQ 88 (303)
T ss_pred ccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCCC---ceeeeh
Confidence 56899999999999986 4554 47888875432 233457899999999999999999999997543 679999
Q ss_pred cCCCCCHHHHHhcCC-Cccc
Q 003307 811 YINAQSLAVYLQGKG-LVLW 829 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~-~l~w 829 (832)
|+++|+|.++++... .++|
T Consensus 89 ~~~~g~l~~~~~~~~~~~~~ 108 (303)
T cd05110 89 LMPHGCLLDYVHEHKDNIGS 108 (303)
T ss_pred hcCCCCHHHHHHhcccCCCH
Confidence 999999999997643 3444
|
Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin |
| >cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-08 Score=104.20 Aligned_cols=90 Identities=24% Similarity=0.382 Sum_probs=76.8
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||++... +++.||+|.+.... ....+++.+|++++++++||||+++++++..... .++|+||+++
T Consensus 6 ~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~--~~lv~e~~~~ 83 (265)
T cd06605 6 LGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGD--ISICMEYMDG 83 (265)
T ss_pred HHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCE--EEEEEEecCC
Confidence 457999999999999985 78999999986542 3445679999999999999999999999988766 9999999999
Q ss_pred CCHHHHHhcC-CCcc
Q 003307 815 QSLAVYLQGK-GLVL 828 (832)
Q Consensus 815 GsL~~~l~~~-~~l~ 828 (832)
++|.+++... ..++
T Consensus 84 ~~L~~~~~~~~~~~~ 98 (265)
T cd06605 84 GSLDKILKEVQGRIP 98 (265)
T ss_pred CcHHHHHHHccCCCC
Confidence 9999999865 4444
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity |
| >cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.1e-08 Score=105.33 Aligned_cols=86 Identities=24% Similarity=0.394 Sum_probs=72.0
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|+.. ++..||+|+++... ......+.+|++++++++||||+++++++...+. .++||||+++
T Consensus 11 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~~ 88 (309)
T cd07872 11 LEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKS--LTLVFEYLDK 88 (309)
T ss_pred EEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCe--EEEEEeCCCC
Confidence 567999999999999974 78899999986432 2234567899999999999999999999988777 9999999985
Q ss_pred CCHHHHHhcCC
Q 003307 815 QSLAVYLQGKG 825 (832)
Q Consensus 815 GsL~~~l~~~~ 825 (832)
+|.+++...+
T Consensus 89 -~l~~~~~~~~ 98 (309)
T cd07872 89 -DLKQYMDDCG 98 (309)
T ss_pred -CHHHHHHhcC
Confidence 8988887543
|
Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play |
| >cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.4e-08 Score=101.90 Aligned_cols=85 Identities=26% Similarity=0.458 Sum_probs=71.2
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
.+.||+|+||.||+|... |..||+|..+... ..+.|.+|+.++++++|+|++++++++...+. ..++|+||+++|+
T Consensus 11 ~~~lg~g~~~~v~~~~~~-~~~~~~k~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~-~~~lv~e~~~~~~ 86 (256)
T cd05082 11 LQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKG-GLYIVTEYMAKGS 86 (256)
T ss_pred eeeecccCCCeEEEEEEc-CCcEEEEEeCCCc--hHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCC-ceEEEEECCCCCc
Confidence 578999999999999874 7889999886432 24679999999999999999999998754332 2899999999999
Q ss_pred HHHHHhcCC
Q 003307 817 LAVYLQGKG 825 (832)
Q Consensus 817 L~~~l~~~~ 825 (832)
|.++++...
T Consensus 87 L~~~~~~~~ 95 (256)
T cd05082 87 LVDYLRSRG 95 (256)
T ss_pred HHHHHHhcC
Confidence 999998643
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re |
| >PTZ00024 cyclin-dependent protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.4e-08 Score=107.27 Aligned_cols=90 Identities=21% Similarity=0.226 Sum_probs=73.7
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhh--------------HHHHHHHHHHHhcCCCCcceeeeeEEECCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKG--------------KKEFAREVKKLGNIKHPNLVSLQGYYWGPK 801 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~--------------~~~f~~e~~~l~~~~H~niv~l~g~~~~~~ 801 (832)
.++||+|+||.||+|+.. +|+.||||+++...... ...+.+|++++++++|+||+++++++...+
T Consensus 14 ~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 93 (335)
T PTZ00024 14 GAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVEGD 93 (335)
T ss_pred hhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEecCC
Confidence 467999999999999974 79999999885321111 125789999999999999999999998877
Q ss_pred CceEEEEEecCCCCCHHHHHhcCCCccc
Q 003307 802 EHEKLVISNYINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 802 ~~~~~lv~e~~~~GsL~~~l~~~~~l~w 829 (832)
. .++||||++ |+|.+++..+..+++
T Consensus 94 ~--~~lv~e~~~-~~l~~~l~~~~~~~~ 118 (335)
T PTZ00024 94 F--INLVMDIMA-SDLKKVVDRKIRLTE 118 (335)
T ss_pred c--EEEEEeccc-cCHHHHHHhcCCCCH
Confidence 7 999999998 699999977665554
|
|
| >cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.3e-08 Score=104.26 Aligned_cols=86 Identities=24% Similarity=0.376 Sum_probs=72.5
Q ss_pred cCeeeeccCceEEEEEEC------CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREG-IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv 808 (832)
.+.||+|+||.||+|... ....+|+|.+... ......++.+|++++.++ +|+||++++++|...+. .++|
T Consensus 17 ~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~--~~li 94 (293)
T cd05053 17 GKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEGP--LYVV 94 (293)
T ss_pred eeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCCCC--eEEE
Confidence 578999999999999863 2367999988643 233446789999999999 89999999999988777 9999
Q ss_pred EecCCCCCHHHHHhcC
Q 003307 809 SNYINAQSLAVYLQGK 824 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~ 824 (832)
|||+++|+|.++++..
T Consensus 95 ~e~~~~~~L~~~l~~~ 110 (293)
T cd05053 95 VEYAAHGNLRDFLRAR 110 (293)
T ss_pred EEeCCCCcHHHHHHhc
Confidence 9999999999999754
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, |
| >cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.6e-08 Score=102.69 Aligned_cols=87 Identities=21% Similarity=0.377 Sum_probs=70.6
Q ss_pred cCeeeeccCceEEEEEEC-C---CCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC----ceEE
Q 003307 737 AEVIGRSCHGTLYKATLD-S---GSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE----HEKL 806 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~---g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~----~~~~ 806 (832)
.+.||+|+||.||+|... + +..||||+++.. .......|.+|++.+++++|||++++++++...+. ...+
T Consensus 4 ~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~ 83 (273)
T cd05035 4 GKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIPKPM 83 (273)
T ss_pred ccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCcccE
Confidence 567999999999999863 2 378999998643 23335679999999999999999999999865432 1268
Q ss_pred EEEecCCCCCHHHHHhc
Q 003307 807 VISNYINAQSLAVYLQG 823 (832)
Q Consensus 807 lv~e~~~~GsL~~~l~~ 823 (832)
+|+||+++|+|.++++.
T Consensus 84 ~v~e~~~~~~l~~~l~~ 100 (273)
T cd05035 84 VILPFMKHGDLHSFLLY 100 (273)
T ss_pred EEEeccCCCCHHHHHHH
Confidence 99999999999999864
|
Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu |
| >cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1 | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.9e-08 Score=105.98 Aligned_cols=92 Identities=20% Similarity=0.226 Sum_probs=78.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG---IAKGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|+||.||+|+.. +|+.||+|.+... .....+.+.+|++++.+++ |+||+++++++...+. .++||||
T Consensus 6 ~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~--~~lv~e~ 83 (280)
T cd05581 6 GKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEEN--LYFVLEY 83 (280)
T ss_pred eeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCce--EEEEEcC
Confidence 567999999999999974 8999999988542 2233467889999999998 9999999999987776 9999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
+++|+|.+++...+.++|.
T Consensus 84 ~~~~~L~~~l~~~~~l~~~ 102 (280)
T cd05581 84 APNGELLQYIRKYGSLDEK 102 (280)
T ss_pred CCCCcHHHHHHHcCCCCHH
Confidence 9999999999887777664
|
Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto |
| >cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85 | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.4e-08 Score=103.57 Aligned_cols=85 Identities=22% Similarity=0.403 Sum_probs=72.0
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|++|.||+|+.. +|..||||.++... ....+.+.+|++++++++|+||+++++++...+. .++||||+++
T Consensus 5 ~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~ 82 (284)
T cd07836 5 LEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENK--LMLVFEYMDK 82 (284)
T ss_pred eeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCc--EEEEEecCCc
Confidence 567999999999999984 79999999986432 2234567889999999999999999999998777 9999999995
Q ss_pred CCHHHHHhcC
Q 003307 815 QSLAVYLQGK 824 (832)
Q Consensus 815 GsL~~~l~~~ 824 (832)
+|.+++...
T Consensus 83 -~l~~~~~~~ 91 (284)
T cd07836 83 -DLKKYMDTH 91 (284)
T ss_pred -cHHHHHHhc
Confidence 899988653
|
Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. |
| >cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.8e-08 Score=103.43 Aligned_cols=90 Identities=22% Similarity=0.323 Sum_probs=75.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+. .+|..||||++.... ....+.+.+|++++++++||||+++++++..... .++||||+
T Consensus 5 ~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~--~~~v~e~~- 81 (286)
T cd07832 5 LGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSG--FVLVMEYM- 81 (286)
T ss_pred EeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCe--eEEEeccc-
Confidence 46799999999999997 479999999986432 2335679999999999999999999999987776 99999999
Q ss_pred CCCHHHHHhcC-CCccc
Q 003307 814 AQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~~-~~l~w 829 (832)
+++|.++++.. +.++|
T Consensus 82 ~~~L~~~~~~~~~~~~~ 98 (286)
T cd07832 82 PSDLSEVLRDEERPLPE 98 (286)
T ss_pred CCCHHHHHHhcCCCCCH
Confidence 99999998753 33444
|
Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea |
| >cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.72 E-value=5e-08 Score=103.61 Aligned_cols=85 Identities=24% Similarity=0.396 Sum_probs=71.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|++|.||+|... +|+.||||.+.... ......+.+|++++++++|+||+++++++...+. .++||||++
T Consensus 10 ~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~- 86 (291)
T cd07844 10 LDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKT--LTLVFEYLD- 86 (291)
T ss_pred EEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCe--EEEEEecCC-
Confidence 568999999999999975 78999999985432 1223457789999999999999999999987776 999999998
Q ss_pred CCHHHHHhcC
Q 003307 815 QSLAVYLQGK 824 (832)
Q Consensus 815 GsL~~~l~~~ 824 (832)
|+|.++++..
T Consensus 87 ~~L~~~~~~~ 96 (291)
T cd07844 87 TDLKQYMDDC 96 (291)
T ss_pred CCHHHHHHhC
Confidence 4999998754
|
Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the |
| >cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.4e-08 Score=103.95 Aligned_cols=90 Identities=23% Similarity=0.367 Sum_probs=73.6
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||.||+|+.. +++.||+|.++... ......+.+|++++.+++||||+++++++...+. .++|+||++
T Consensus 11 ~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~--~~lv~e~~~- 87 (301)
T cd07873 11 LDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKS--LTLVFEYLD- 87 (301)
T ss_pred eeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCe--EEEEEeccc-
Confidence 567999999999999874 78999999885332 2234567889999999999999999999987776 999999998
Q ss_pred CCHHHHHhcC-CCccc
Q 003307 815 QSLAVYLQGK-GLVLW 829 (832)
Q Consensus 815 GsL~~~l~~~-~~l~w 829 (832)
|+|.++++.. ..+++
T Consensus 88 ~~l~~~l~~~~~~~~~ 103 (301)
T cd07873 88 KDLKQYLDDCGNSINM 103 (301)
T ss_pred cCHHHHHHhcCCCCCH
Confidence 5999988754 33443
|
Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl |
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.6e-08 Score=104.95 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=61.8
Q ss_pred cCeeeeccCceEEEEEEC--CCCEEEEEEeccC-----ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD--SGSILAVKRLREG-----IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~--~g~~vAvK~l~~~-----~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
...||+|+||+||+|... +|+.||||++... .....+.|.+|++++.+++|+|+|+.+..+ .. .++||
T Consensus 23 ~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~---~~--~~LVm 97 (365)
T PRK09188 23 TAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLAT---GK--DGLVR 97 (365)
T ss_pred ccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEc---CC--cEEEE
Confidence 788999999999999863 6888999987432 122356699999999999999999633222 34 79999
Q ss_pred ecCCCCCHHH
Q 003307 810 NYINAQSLAV 819 (832)
Q Consensus 810 e~~~~GsL~~ 819 (832)
|||++++|..
T Consensus 98 E~~~G~~L~~ 107 (365)
T PRK09188 98 GWTEGVPLHL 107 (365)
T ss_pred EccCCCCHHH
Confidence 9999999973
|
|
| >cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3 | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.4e-08 Score=102.69 Aligned_cols=90 Identities=23% Similarity=0.304 Sum_probs=69.9
Q ss_pred eeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHH---hcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 739 VIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKL---GNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l---~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
+||+|+||.||++.. .+|+.+|||.+.... ......+.+|..++ ...+|||++++++++...+. .++||||
T Consensus 1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~lv~e~ 78 (279)
T cd05633 1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDK--LCFILDL 78 (279)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCe--EEEEEec
Confidence 489999999999997 478999999885432 11223344554433 34579999999999987776 9999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
+++|+|.++++.++.++|.
T Consensus 79 ~~~~~L~~~i~~~~~l~~~ 97 (279)
T cd05633 79 MNGGDLHYHLSQHGVFSEK 97 (279)
T ss_pred CCCCCHHHHHHhcCCCCHH
Confidence 9999999999887777765
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi |
| >cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.5e-08 Score=102.14 Aligned_cols=86 Identities=22% Similarity=0.389 Sum_probs=69.0
Q ss_pred cCeeeeccCceEEEEEEC-CCC--EEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC----ceEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGS--ILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE----HEKLV 807 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~--~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~----~~~~l 807 (832)
+..||+|+||.||+|+.. ++. .||||.++.. .....+.|.+|++++.+++|+||++++++|..... ...++
T Consensus 4 ~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~ 83 (272)
T cd05075 4 GKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSPVV 83 (272)
T ss_pred ccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCcEE
Confidence 567999999999999974 443 6899988543 23345779999999999999999999999854221 12689
Q ss_pred EEecCCCCCHHHHHh
Q 003307 808 ISNYINAQSLAVYLQ 822 (832)
Q Consensus 808 v~e~~~~GsL~~~l~ 822 (832)
|+|||++|+|.+++.
T Consensus 84 v~e~~~~~~l~~~~~ 98 (272)
T cd05075 84 ILPFMKHGDLHSFLL 98 (272)
T ss_pred EEEeCCCCcHHHHHH
Confidence 999999999999874
|
Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor |
| >cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.4e-08 Score=107.22 Aligned_cols=87 Identities=34% Similarity=0.462 Sum_probs=70.9
Q ss_pred cCeeeeccCceEEEEEE------CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATL------DSGSILAVKRLREGI-AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv 808 (832)
.+.||+|+||.||+|+. .+++.||+|+++... ....+.+..|++++.++ +|+||++++++|...+. ..+++
T Consensus 12 ~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~-~~~~v 90 (337)
T cd05054 12 GKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGG-PLMVI 90 (337)
T ss_pred hcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCCC-CEEEE
Confidence 67899999999999974 235789999986432 22345688899999999 89999999999875443 38899
Q ss_pred EecCCCCCHHHHHhcC
Q 003307 809 SNYINAQSLAVYLQGK 824 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~ 824 (832)
+||+++|+|.++|+..
T Consensus 91 ~ey~~~~~L~~~i~~~ 106 (337)
T cd05054 91 VEYCKFGNLSNYLRSK 106 (337)
T ss_pred EecCCCCCHHHHHHhc
Confidence 9999999999999754
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto |
| >cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.6e-08 Score=105.28 Aligned_cols=86 Identities=21% Similarity=0.317 Sum_probs=74.0
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh---hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA---KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|... +|+.||+|.+..... ...+.+.+|++++.+++|+||+++++++...+. .++||||+
T Consensus 6 ~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~--~~lv~e~~ 83 (316)
T cd05574 6 IKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETY--LCLVMDYC 83 (316)
T ss_pred eeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCE--EEEEEEec
Confidence 467999999999999975 689999999854322 244678999999999999999999999987776 99999999
Q ss_pred CCCCHHHHHhcC
Q 003307 813 NAQSLAVYLQGK 824 (832)
Q Consensus 813 ~~GsL~~~l~~~ 824 (832)
++|+|.++++..
T Consensus 84 ~~~~L~~~~~~~ 95 (316)
T cd05574 84 PGGELFRLLQRQ 95 (316)
T ss_pred CCCCHHHHHHhC
Confidence 999999999754
|
Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin |
| >cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8 | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.4e-08 Score=101.07 Aligned_cols=86 Identities=19% Similarity=0.357 Sum_probs=74.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|+||.||++.. .++..+|||.+... .....+.+..|++++++++|||++++++++...+. .++|+||++
T Consensus 5 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~--~~lv~e~~~ 82 (256)
T cd08220 5 IRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKA--LMIVMEYAP 82 (256)
T ss_pred EEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCE--EEEEEecCC
Confidence 56799999999999987 47899999988543 22345679999999999999999999999887666 999999999
Q ss_pred CCCHHHHHhcC
Q 003307 814 AQSLAVYLQGK 824 (832)
Q Consensus 814 ~GsL~~~l~~~ 824 (832)
+|+|.++++..
T Consensus 83 ~~~L~~~~~~~ 93 (256)
T cd08220 83 GGTLAEYIQKR 93 (256)
T ss_pred CCCHHHHHHHh
Confidence 99999999864
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with |
| >KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.5e-09 Score=110.77 Aligned_cols=81 Identities=22% Similarity=0.409 Sum_probs=68.5
Q ss_pred eeeeccCceEEEEEE-CCCCEEEEEEeccCChhh---HHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 739 VIGRSCHGTLYKATL-DSGSILAVKRLREGIAKG---KKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~---~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.||.|+||.||-|+. .+.++||||++.-..++. -.++..||+.|.+++|||.|...|||..... .+||||||-
T Consensus 33 EIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~T--aWLVMEYCl- 109 (948)
T KOG0577|consen 33 EIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHT--AWLVMEYCL- 109 (948)
T ss_pred HhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccch--HHHHHHHHh-
Confidence 499999999999996 588999999995443333 3468899999999999999999999987766 999999998
Q ss_pred CCHHHHHh
Q 003307 815 QSLAVYLQ 822 (832)
Q Consensus 815 GsL~~~l~ 822 (832)
||-.|+|.
T Consensus 110 GSAsDlle 117 (948)
T KOG0577|consen 110 GSASDLLE 117 (948)
T ss_pred ccHHHHHH
Confidence 57777764
|
|
| >cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.6e-08 Score=104.22 Aligned_cols=91 Identities=24% Similarity=0.339 Sum_probs=75.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|++|.||+|.. .+|..||||++.... ....+.+.+|++++++++|||++++++++...+. .++||||++
T Consensus 4 ~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~--~~iv~e~~~ 81 (283)
T cd07835 4 VEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENK--LYLVFEFLD 81 (283)
T ss_pred heEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCe--EEEEEeccC
Confidence 46799999999999997 489999999885332 2234678899999999999999999999988776 999999995
Q ss_pred CCCHHHHHhcCC--Ccccc
Q 003307 814 AQSLAVYLQGKG--LVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~--~l~w~ 830 (832)
++|.+++.... .++|.
T Consensus 82 -~~l~~~~~~~~~~~~~~~ 99 (283)
T cd07835 82 -LDLKKYMDSSPLTGLDPP 99 (283)
T ss_pred -cCHHHHHhhCCCCCCCHH
Confidence 69999998655 55553
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc |
| >cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4 | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.2e-08 Score=103.67 Aligned_cols=86 Identities=26% Similarity=0.431 Sum_probs=72.0
Q ss_pred cCeeeeccCceEEEEEE--------CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEE
Q 003307 737 AEVIGRSCHGTLYKATL--------DSGSILAVKRLREG-IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKL 806 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~--------~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~ 806 (832)
.+.||+|+||.||+|+. .....+|+|.++.. ......++..|++++.++ +||||++++++|..... .+
T Consensus 17 ~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~--~~ 94 (314)
T cd05099 17 GKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQEGP--LY 94 (314)
T ss_pred eeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccCCc--eE
Confidence 67899999999999974 13457999988643 233456789999999999 69999999999987776 99
Q ss_pred EEEecCCCCCHHHHHhcC
Q 003307 807 VISNYINAQSLAVYLQGK 824 (832)
Q Consensus 807 lv~e~~~~GsL~~~l~~~ 824 (832)
+|+||+++|+|.++++..
T Consensus 95 lv~e~~~~g~L~~~i~~~ 112 (314)
T cd05099 95 VIVEYAAKGNLREFLRAR 112 (314)
T ss_pred EEEecCCCCcHHHHHHhc
Confidence 999999999999999764
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.2e-08 Score=105.18 Aligned_cols=86 Identities=24% Similarity=0.396 Sum_probs=71.9
Q ss_pred cCeeeeccCceEEEEEEC--------CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEE
Q 003307 737 AEVIGRSCHGTLYKATLD--------SGSILAVKRLREG-IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKL 806 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~--------~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~ 806 (832)
...||+|+||.||+|+.. .+..||+|.++.. .....++|.+|++++.++ +||||++++++|...+. .+
T Consensus 17 ~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~--~~ 94 (334)
T cd05100 17 GKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGP--LY 94 (334)
T ss_pred cceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCCc--eE
Confidence 678999999999999741 1237899988643 233456899999999999 89999999999987776 99
Q ss_pred EEEecCCCCCHHHHHhcC
Q 003307 807 VISNYINAQSLAVYLQGK 824 (832)
Q Consensus 807 lv~e~~~~GsL~~~l~~~ 824 (832)
+||||+++|+|.+++...
T Consensus 95 lv~e~~~~g~L~~~l~~~ 112 (334)
T cd05100 95 VLVEYASKGNLREYLRAR 112 (334)
T ss_pred EEEecCCCCcHHHHHHhc
Confidence 999999999999999764
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.5e-08 Score=104.22 Aligned_cols=91 Identities=21% Similarity=0.329 Sum_probs=74.0
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+.. +|+.||+|.+... .....+++.+|++++++++|||++++.++|...+. .++||||+
T Consensus 20 ~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~--~~lv~e~~ 97 (307)
T cd06607 20 LREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHT--AWLVMEYC 97 (307)
T ss_pred heeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCe--EEEEHHhh
Confidence 567999999999999974 7899999988532 22334678999999999999999999999998777 99999999
Q ss_pred CCCCHHHHHhc-CCCcccc
Q 003307 813 NAQSLAVYLQG-KGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~-~~~l~w~ 830 (832)
+ |++.+++.. ...++|.
T Consensus 98 ~-g~l~~~~~~~~~~l~~~ 115 (307)
T cd06607 98 L-GSASDILEVHKKPLQEV 115 (307)
T ss_pred C-CCHHHHHHHcccCCCHH
Confidence 8 678777754 3445553
|
Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily |
| >PHA03212 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.8e-08 Score=108.06 Aligned_cols=85 Identities=20% Similarity=0.233 Sum_probs=72.6
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|+||.||+|.. .+++.||+|+.. .+.+.+|++++++++|||||++++++..... .++|+||+. |
T Consensus 97 ~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~------~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~--~~lv~e~~~-~ 167 (391)
T PHA03212 97 LETFTPGAEGFAFACIDNKTCEHVVIKAGQ------RGGTATEAHILRAINHPSIIQLKGTFTYNKF--TCLILPRYK-T 167 (391)
T ss_pred EEEEcCCCCeEEEEEEECCCCCEEEEechh------hhhhHHHHHHHHhCCCCCCCCEeEEEEECCe--eEEEEecCC-C
Confidence 56799999999999997 488999999753 2346889999999999999999999987776 899999996 7
Q ss_pred CHHHHHhcCCCcccc
Q 003307 816 SLAVYLQGKGLVLWF 830 (832)
Q Consensus 816 sL~~~l~~~~~l~w~ 830 (832)
+|.+++..++.++|.
T Consensus 168 ~L~~~l~~~~~l~~~ 182 (391)
T PHA03212 168 DLYCYLAAKRNIAIC 182 (391)
T ss_pred CHHHHHHhcCCCCHH
Confidence 999998877766653
|
|
| >cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3 | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.6e-08 Score=104.27 Aligned_cols=90 Identities=23% Similarity=0.411 Sum_probs=73.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|++|.||+|+.. +|+.||||+++... ....+.+.+|++++++++||||+++++++...+. .++||||++
T Consensus 5 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~--~~~v~e~~~ 82 (284)
T cd07860 5 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENK--LYLVFEFLH 82 (284)
T ss_pred eeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCc--EEEEeeccc
Confidence 467999999999999974 79999999885332 2234578999999999999999999999987777 999999996
Q ss_pred CCCHHHHHhcC--CCccc
Q 003307 814 AQSLAVYLQGK--GLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~~--~~l~w 829 (832)
++|.++++.. ..++|
T Consensus 83 -~~l~~~~~~~~~~~l~~ 99 (284)
T cd07860 83 -QDLKKFMDASPLSGIPL 99 (284)
T ss_pred -cCHHHHHHhCCCCCCCH
Confidence 6899998753 34454
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex |
| >cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.3e-08 Score=103.84 Aligned_cols=91 Identities=25% Similarity=0.374 Sum_probs=75.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+.. +++.||||+++.. .....+.+.+|++++++++|+||+++++++...+. .++||||++
T Consensus 6 ~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~--~~iv~e~~~ 83 (288)
T cd07833 6 LGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGR--LYLVFEYVE 83 (288)
T ss_pred EEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCE--EEEEEecCC
Confidence 567999999999999975 7899999988543 22335678999999999999999999999988776 999999999
Q ss_pred CCCHHHHHhcCCCccc
Q 003307 814 AQSLAVYLQGKGLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w 829 (832)
++.+..+......+++
T Consensus 84 ~~~l~~~~~~~~~~~~ 99 (288)
T cd07833 84 RTLLELLEASPGGLPP 99 (288)
T ss_pred CCHHHHHHhcCCCCCH
Confidence 9888777665555554
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning |
| >cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.4e-08 Score=100.00 Aligned_cols=89 Identities=17% Similarity=0.210 Sum_probs=70.0
Q ss_pred eeeeccCceEEEEEE-CCCCEEEEEEeccCCh---hhHHHHHHHHHHH-hcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 739 VIGRSCHGTLYKATL-DSGSILAVKRLREGIA---KGKKEFAREVKKL-GNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~f~~e~~~l-~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.||+|+||.||+|.. .+|+.||||.++.... .....+..|..++ ...+|+|++++++++...+. .++|+||++
T Consensus 3 ~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~--~~lv~e~~~ 80 (260)
T cd05611 3 PISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDY--LYLVMEYLN 80 (260)
T ss_pred cCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCe--EEEEEeccC
Confidence 489999999999997 4789999999854321 1223445555544 45689999999999987776 999999999
Q ss_pred CCCHHHHHhcCCCccc
Q 003307 814 AQSLAVYLQGKGLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w 829 (832)
+|+|.++++..+.+++
T Consensus 81 ~~~L~~~l~~~~~~~~ 96 (260)
T cd05611 81 GGDCASLIKTLGGLPE 96 (260)
T ss_pred CCCHHHHHHHcCCCCH
Confidence 9999999987666554
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do |
| >cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin | Back alignment and domain information |
|---|
Probab=98.67 E-value=1e-07 Score=101.26 Aligned_cols=86 Identities=28% Similarity=0.443 Sum_probs=70.9
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCC---ceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKE---HEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~---~~~~lv~e~ 811 (832)
.+.||+|+||.||++.. .+|+.+|+|.+..... ....+.+|+.++.++ +|||+++++++|...+. ...++|+||
T Consensus 27 ~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~-~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~~~~~~~~~~lv~ey 105 (291)
T cd06639 27 IETIGKGTYGKVYKVTNKKDGSLAAVKILDPISD-VDEEIEAEYNILQSLPNHPNVVKFYGMFYKADKLVGGQLWLVLEL 105 (291)
T ss_pred EEEeecCCCeEEEEEEECCCCCEEEEEEeccccc-HHHHHHHHHHHHHHhcCCCCeEEEEEEEEeccccCCCeeEEEEEE
Confidence 56799999999999997 5789999999854322 245678899999998 89999999999875432 238999999
Q ss_pred CCCCCHHHHHhc
Q 003307 812 INAQSLAVYLQG 823 (832)
Q Consensus 812 ~~~GsL~~~l~~ 823 (832)
+++|+|.++++.
T Consensus 106 ~~~~sL~~~~~~ 117 (291)
T cd06639 106 CNGGSVTELVKG 117 (291)
T ss_pred CCCCcHHHHHHH
Confidence 999999998863
|
Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre |
| >cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.3e-08 Score=101.93 Aligned_cols=84 Identities=24% Similarity=0.313 Sum_probs=69.7
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||.||+|.. .+|..||+|++.... ......+.+|++++++++|+||+++.+++...+. .++|+||++
T Consensus 10 ~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~--~~lv~e~~~- 86 (291)
T cd07870 10 LEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKET--LTFVFEYMH- 86 (291)
T ss_pred EEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCe--EEEEEeccc-
Confidence 56799999999999987 478999999985432 2223467899999999999999999999987766 999999996
Q ss_pred CCHHHHHhc
Q 003307 815 QSLAVYLQG 823 (832)
Q Consensus 815 GsL~~~l~~ 823 (832)
+++.+++..
T Consensus 87 ~~l~~~~~~ 95 (291)
T cd07870 87 TDLAQYMIQ 95 (291)
T ss_pred CCHHHHHHh
Confidence 678777654
|
Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess |
| >cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.5e-08 Score=101.32 Aligned_cols=89 Identities=20% Similarity=0.261 Sum_probs=75.7
Q ss_pred eeeccCceEEEEEEC-CCCEEEEEEeccCCh---hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 740 IGRSCHGTLYKATLD-SGSILAVKRLREGIA---KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 740 iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
||+|+||.||++... +|+.+|+|.+..... ...+.+..|++++++++|+||+++++.+...+. .++||||++++
T Consensus 1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~~v~e~~~~~ 78 (250)
T cd05123 1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEK--LYLVLEYAPGG 78 (250)
T ss_pred CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCe--eEEEEecCCCC
Confidence 699999999999974 689999999854322 235678999999999999999999999987776 99999999999
Q ss_pred CHHHHHhcCCCcccc
Q 003307 816 SLAVYLQGKGLVLWF 830 (832)
Q Consensus 816 sL~~~l~~~~~l~w~ 830 (832)
+|.+++...+.++|.
T Consensus 79 ~L~~~l~~~~~l~~~ 93 (250)
T cd05123 79 ELFSHLSKEGRFSEE 93 (250)
T ss_pred cHHHHHHhcCCCCHH
Confidence 999999877666653
|
Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the |
| >cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2 | Back alignment and domain information |
|---|
Probab=98.67 E-value=8e-08 Score=101.57 Aligned_cols=85 Identities=26% Similarity=0.380 Sum_probs=72.2
Q ss_pred cCeeeeccCceEEEEEEC------CCCEEEEEEeccCCh-hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~~-~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
.+.||+|+||.||+|... ++..||||+++.... ...+.|.+|++++.+++|||||++++++...+. .++++
T Consensus 10 ~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~--~~~~~ 87 (283)
T cd05091 10 MEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQP--LSMIF 87 (283)
T ss_pred HHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCc--eEEEE
Confidence 456999999999999862 357899999964432 234678999999999999999999999988777 99999
Q ss_pred ecCCCCCHHHHHhc
Q 003307 810 NYINAQSLAVYLQG 823 (832)
Q Consensus 810 e~~~~GsL~~~l~~ 823 (832)
||+++++|.+++..
T Consensus 88 e~~~~~~l~~~l~~ 101 (283)
T cd05091 88 SYCSHSDLHEFLVM 101 (283)
T ss_pred EcCCCCcHHHHHHh
Confidence 99999999999864
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.7e-08 Score=101.03 Aligned_cols=84 Identities=29% Similarity=0.454 Sum_probs=71.2
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|++|.||+|+.. +|..||||+++.. .....+.+.+|++++.+++|||++++++++..++. .++|+||++
T Consensus 5 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~~v~e~~~ 82 (285)
T cd07861 5 IEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESR--LYLIFEFLS 82 (285)
T ss_pred eeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCe--EEEEEecCC
Confidence 467999999999999974 7999999988532 22234678899999999999999999999987776 999999998
Q ss_pred CCCHHHHHhc
Q 003307 814 AQSLAVYLQG 823 (832)
Q Consensus 814 ~GsL~~~l~~ 823 (832)
|+|.++++.
T Consensus 83 -~~l~~~~~~ 91 (285)
T cd07861 83 -MDLKKYLDS 91 (285)
T ss_pred -CCHHHHHhc
Confidence 689998864
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.5e-09 Score=122.02 Aligned_cols=179 Identities=25% Similarity=0.266 Sum_probs=104.2
Q ss_pred CCCCEEEcCCCC--CcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEe
Q 003307 90 KMLCNVSVSNNQ--LMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYL 166 (832)
Q Consensus 90 ~~L~~L~Ls~n~--l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 166 (832)
+.|++|-+..|. +..... .|..++.|++|||++|.=-+.+|..++.|-+|++|+|++..++ .+|..+++|++|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 357777777775 332222 4667788888888877555567777888888888888888877 577778888888888
Q ss_pred eCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcC----E
Q 003307 167 DLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLE----V 242 (832)
Q Consensus 167 ~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~----~ 242 (832)
++..+.-...++.....+++|++|.+..-.... -...+..+..+.+|+.+....... .+... +..+..|. .
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~-~~~~l~el~~Le~L~~ls~~~~s~--~~~e~--l~~~~~L~~~~~~ 698 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSN-DKLLLKELENLEHLENLSITISSV--LLLED--LLGMTRLRSLLQS 698 (889)
T ss_pred ccccccccccccchhhhcccccEEEeecccccc-chhhHHhhhcccchhhheeecchh--HhHhh--hhhhHHHHHHhHh
Confidence 887776555556666677778877776554221 012233333445555544432222 00000 11222222 2
Q ss_pred EEccCCcccccCCCccccccccEEEccccCCC
Q 003307 243 FDASNNHLVGAIPSFNFVFSLRILRLGSNQLS 274 (832)
Q Consensus 243 L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~ 274 (832)
+.+..+.....+..+..+.+|+.|.+.++.+.
T Consensus 699 l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 699 LSIEGCSKRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred hhhcccccceeecccccccCcceEEEEcCCCc
Confidence 22223333334445666777777777777665
|
|
| >KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-08 Score=92.76 Aligned_cols=81 Identities=28% Similarity=0.418 Sum_probs=66.8
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEec--cCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLR--EGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~--~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
-+.||+|.||+||||+. .+++.||+|+.+ +...+....-.+|+-+++.++|+|||+++....+.+. .-+|+|||.
T Consensus 7 mekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkk--ltlvfe~cd 84 (292)
T KOG0662|consen 7 MEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKK--LTLVFEFCD 84 (292)
T ss_pred HHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCce--eEEeHHHhh
Confidence 35699999999999996 578999999874 3334445677899999999999999999999888777 899999997
Q ss_pred CCCHHHH
Q 003307 814 AQSLAVY 820 (832)
Q Consensus 814 ~GsL~~~ 820 (832)
. +|..+
T Consensus 85 q-dlkky 90 (292)
T KOG0662|consen 85 Q-DLKKY 90 (292)
T ss_pred H-HHHHH
Confidence 4 45443
|
|
| >cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4 | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-07 Score=98.76 Aligned_cols=86 Identities=20% Similarity=0.339 Sum_probs=71.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|++|.||++... +++.||||++... .....+.+.+|++++++++|+|++++++++...+. ..++||||++
T Consensus 5 ~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~-~~~lv~e~~~ 83 (257)
T cd08223 5 VRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDG-LLYIVMGFCE 83 (257)
T ss_pred EEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCC-EEEEEecccC
Confidence 467999999999999974 7889999998542 23345678999999999999999999988764332 3789999999
Q ss_pred CCCHHHHHhc
Q 003307 814 AQSLAVYLQG 823 (832)
Q Consensus 814 ~GsL~~~l~~ 823 (832)
+|+|.++++.
T Consensus 84 ~~~l~~~l~~ 93 (257)
T cd08223 84 GGDLYHKLKE 93 (257)
T ss_pred CCcHHHHHHH
Confidence 9999999976
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. |
| >cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10 | Back alignment and domain information |
|---|
Probab=98.66 E-value=1e-07 Score=99.98 Aligned_cols=84 Identities=20% Similarity=0.369 Sum_probs=69.2
Q ss_pred cCeeeeccCceEEEEEEC--CCCEEEEEEeccC----------ChhhHHHHHHHHHHHhc-CCCCcceeeeeEEECCCCc
Q 003307 737 AEVIGRSCHGTLYKATLD--SGSILAVKRLREG----------IAKGKKEFAREVKKLGN-IKHPNLVSLQGYYWGPKEH 803 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~--~g~~vAvK~l~~~----------~~~~~~~f~~e~~~l~~-~~H~niv~l~g~~~~~~~~ 803 (832)
.+.||+|+||.||+|... .++.+|||.+... ......++..|+.++.+ ++||||++++++|...+.
T Consensus 5 ~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~- 83 (269)
T cd08528 5 LEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLENDR- 83 (269)
T ss_pred hhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEccCCe-
Confidence 567999999999999974 4788999987421 12234567889998875 799999999999987776
Q ss_pred eEEEEEecCCCCCHHHHHh
Q 003307 804 EKLVISNYINAQSLAVYLQ 822 (832)
Q Consensus 804 ~~~lv~e~~~~GsL~~~l~ 822 (832)
.++||||+++++|.+++.
T Consensus 84 -~~lv~e~~~~~~l~~~l~ 101 (269)
T cd08528 84 -LYIVMDLIEGAPLGEHFN 101 (269)
T ss_pred -EEEEEecCCCCcHHHHHH
Confidence 999999999999999874
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. |
| >smart00221 STYKc Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-07 Score=96.28 Aligned_cols=91 Identities=31% Similarity=0.538 Sum_probs=78.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChh-hHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAK-GKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|++|.||+|+.. +++.+|+|.+...... ..+.+.+|++.+.+++|+|++++++++...+. .++++||+++
T Consensus 4 ~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~--~~~v~e~~~~ 81 (225)
T smart00221 4 GKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEP--LYLVMEYCEG 81 (225)
T ss_pred eeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCc--eEEEEeccCC
Confidence 467999999999999986 5899999998654433 56789999999999999999999999987777 9999999999
Q ss_pred CCHHHHHhcCCC-ccc
Q 003307 815 QSLAVYLQGKGL-VLW 829 (832)
Q Consensus 815 GsL~~~l~~~~~-l~w 829 (832)
++|.++++.... ++|
T Consensus 82 ~~L~~~~~~~~~~~~~ 97 (225)
T smart00221 82 GDLFDYLRKKGGKLSE 97 (225)
T ss_pred CCHHHHHHhcccCCCH
Confidence 999999987654 454
|
Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. |
| >PTZ00283 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.3e-08 Score=109.00 Aligned_cols=88 Identities=22% Similarity=0.222 Sum_probs=71.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCc------eEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEH------EKLV 807 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~------~~~l 807 (832)
.+.||+|+||.||+|+. .+|+.||||+++.. .......+.+|+..+..++|+|++++...+...+.. ..++
T Consensus 37 ~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~~~~~~i~l 116 (496)
T PTZ00283 37 SRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNPENVLMIAL 116 (496)
T ss_pred EEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCcccceEEEE
Confidence 67899999999999986 58999999998543 233456788999999999999999998776543211 2689
Q ss_pred EEecCCCCCHHHHHhcC
Q 003307 808 ISNYINAQSLAVYLQGK 824 (832)
Q Consensus 808 v~e~~~~GsL~~~l~~~ 824 (832)
||||+++|+|.++|+.+
T Consensus 117 V~Ey~~~gsL~~~l~~~ 133 (496)
T PTZ00283 117 VLDYANAGDLRQEIKSR 133 (496)
T ss_pred EEeCCCCCcHHHHHHHh
Confidence 99999999999999753
|
|
| >KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-09 Score=104.39 Aligned_cols=84 Identities=17% Similarity=0.270 Sum_probs=71.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
-++||+|+|+.||++.. ++|+.+|+|.+... ...+.++..+|+++-+.++|||||+|...+.+... .|+|+|+|+
T Consensus 16 ~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~--~ylvFe~m~ 93 (355)
T KOG0033|consen 16 KEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESF--HYLVFDLVT 93 (355)
T ss_pred HHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccce--eEEEEeccc
Confidence 45799999999999986 68999999988432 33356788999999999999999999999887766 999999999
Q ss_pred CCCHHHHHh
Q 003307 814 AQSLAVYLQ 822 (832)
Q Consensus 814 ~GsL~~~l~ 822 (832)
+|+|..-|-
T Consensus 94 G~dl~~eIV 102 (355)
T KOG0033|consen 94 GGELFEDIV 102 (355)
T ss_pred chHHHHHHH
Confidence 999976543
|
|
| >cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.5e-08 Score=99.20 Aligned_cols=86 Identities=19% Similarity=0.370 Sum_probs=74.6
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|+||.||++... ++..||+|++.... ....+++.+|++++++++|+|++++.+++...+. .++|+||++
T Consensus 5 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~--~~lv~e~~~ 82 (258)
T cd08215 5 IKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGK--LCIVMEYAD 82 (258)
T ss_pred EeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCE--EEEEEEecC
Confidence 467999999999999974 78999999986432 2456778999999999999999999999887766 999999999
Q ss_pred CCCHHHHHhcC
Q 003307 814 AQSLAVYLQGK 824 (832)
Q Consensus 814 ~GsL~~~l~~~ 824 (832)
+++|.++++..
T Consensus 83 ~~~L~~~l~~~ 93 (258)
T cd08215 83 GGDLSQKIKKQ 93 (258)
T ss_pred CCcHHHHHHHh
Confidence 99999999764
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They |
| >cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1 | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-07 Score=101.82 Aligned_cols=91 Identities=24% Similarity=0.345 Sum_probs=74.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+. .+|..||+|++... .......+..|++++++++|||+|+++++|...+. .++||||+
T Consensus 30 ~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~ 107 (317)
T cd06635 30 LREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHT--AWLVMEYC 107 (317)
T ss_pred hheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCe--EEEEEeCC
Confidence 56799999999999997 47899999998532 22234578899999999999999999999988777 99999999
Q ss_pred CCCCHHHHHhc-CCCcccc
Q 003307 813 NAQSLAVYLQG-KGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~-~~~l~w~ 830 (832)
+ |+|.+.+.. ...++|.
T Consensus 108 ~-g~l~~~~~~~~~~l~~~ 125 (317)
T cd06635 108 L-GSASDLLEVHKKPLQEV 125 (317)
T ss_pred C-CCHHHHHHHhcCCCCHH
Confidence 7 588887754 3445553
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron |
| >cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.9e-08 Score=102.37 Aligned_cols=92 Identities=23% Similarity=0.301 Sum_probs=75.4
Q ss_pred cCeeeeccCceEEEEEE----CCCCEEEEEEeccCC----hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEE
Q 003307 737 AEVIGRSCHGTLYKATL----DSGSILAVKRLREGI----AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLV 807 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~----~~g~~vAvK~l~~~~----~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~l 807 (832)
.+.||+|+||.||+++. .++..||||.++... ....+.+.+|++++.++ +||||+++++++...+. .++
T Consensus 5 ~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~--~~l 82 (288)
T cd05583 5 LRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTK--LHL 82 (288)
T ss_pred EEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCE--EEE
Confidence 46799999999999974 367899999886421 22345688999999999 59999999998877766 899
Q ss_pred EEecCCCCCHHHHHhcCCCcccc
Q 003307 808 ISNYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 808 v~e~~~~GsL~~~l~~~~~l~w~ 830 (832)
||||+++|+|.+++.....++|.
T Consensus 83 v~e~~~~~~L~~~~~~~~~~~~~ 105 (288)
T cd05583 83 ILDYVNGGELFTHLYQREHFTES 105 (288)
T ss_pred EEecCCCCcHHHHHhhcCCcCHH
Confidence 99999999999999876666553
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines |
| >KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.9e-08 Score=104.67 Aligned_cols=86 Identities=20% Similarity=0.225 Sum_probs=74.2
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCCh--hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIA--KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
++.||+|.|+.|-.|+. -+|..||||++++... ........|++.|.-++|||||+||....++.. .|||.|.=.
T Consensus 23 ekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTK--lyLiLELGD 100 (864)
T KOG4717|consen 23 EKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTK--LYLILELGD 100 (864)
T ss_pred hhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccce--EEEEEEecC
Confidence 67899999999999875 3899999999965432 234567889999999999999999999988888 999999999
Q ss_pred CCCHHHHHhcC
Q 003307 814 AQSLAVYLQGK 824 (832)
Q Consensus 814 ~GsL~~~l~~~ 824 (832)
+|+|+|+|.++
T Consensus 101 ~GDl~DyImKH 111 (864)
T KOG4717|consen 101 GGDLFDYIMKH 111 (864)
T ss_pred CchHHHHHHhh
Confidence 99999999644
|
|
| >cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.1e-08 Score=99.34 Aligned_cols=83 Identities=23% Similarity=0.450 Sum_probs=70.9
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
.+.||+|+||.||+|.. +++.||+|.++... ..+.|.+|+.++++++|||++++++++.. +. .++||||+++|+
T Consensus 11 ~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~~--~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~--~~~v~e~~~~~~ 84 (254)
T cd05083 11 GEIIGEGEFGAVLQGEY-TGQKVAVKNIKCDV--TAQAFLEETAVMTKLHHKNLVRLLGVILH-NG--LYIVMELMSKGN 84 (254)
T ss_pred eeeeccCCCCceEeccc-CCCceEEEeecCcc--hHHHHHHHHHHHHhCCCCCcCeEEEEEcC-CC--cEEEEECCCCCC
Confidence 67899999999999985 67889999985432 24678999999999999999999999864 33 799999999999
Q ss_pred HHHHHhcCC
Q 003307 817 LAVYLQGKG 825 (832)
Q Consensus 817 L~~~l~~~~ 825 (832)
|.++++...
T Consensus 85 L~~~l~~~~ 93 (254)
T cd05083 85 LVNFLRTRG 93 (254)
T ss_pred HHHHHHhcC
Confidence 999997643
|
Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki |
| >KOG0589 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.2e-08 Score=104.84 Aligned_cols=88 Identities=15% Similarity=0.296 Sum_probs=72.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.+|+|+||.++..+.+ +++.+++|.+.-. ....++....|+.++++++|||||.....+...+. ..+|||+||+
T Consensus 9 ~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~-~l~Ivm~Y~e 87 (426)
T KOG0589|consen 9 LRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQ-LLCIVMEYCE 87 (426)
T ss_pred hhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCc-eEEEEEeecC
Confidence 467999999999988764 7889999988533 23345578899999999999999999998875543 3899999999
Q ss_pred CCCHHHHHhcCC
Q 003307 814 AQSLAVYLQGKG 825 (832)
Q Consensus 814 ~GsL~~~l~~~~ 825 (832)
||++.+.|.+++
T Consensus 88 Gg~l~~~i~~~k 99 (426)
T KOG0589|consen 88 GGDLAQLIKEQK 99 (426)
T ss_pred CCCHHHHHHHHh
Confidence 999999998665
|
|
| >KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3e-08 Score=108.97 Aligned_cols=84 Identities=21% Similarity=0.349 Sum_probs=69.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh---hhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA---KGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
-.++|+|.||+|+.+++. +++.+|||++++... ...+..+.|-+++.-+ +||-|+.|++++.+.+. .+.||||
T Consensus 373 l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~--l~fvmey 450 (694)
T KOG0694|consen 373 LAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEH--LFFVMEY 450 (694)
T ss_pred EEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCe--EEEEEEe
Confidence 678999999999999985 889999999976532 2345677788887766 69999999999998888 9999999
Q ss_pred CCCCCHHHHHh
Q 003307 812 INAQSLAVYLQ 822 (832)
Q Consensus 812 ~~~GsL~~~l~ 822 (832)
+.||++..+.|
T Consensus 451 ~~Ggdm~~~~~ 461 (694)
T KOG0694|consen 451 VAGGDLMHHIH 461 (694)
T ss_pred cCCCcEEEEEe
Confidence 99999554433
|
|
| >cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6 | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-07 Score=100.53 Aligned_cols=84 Identities=21% Similarity=0.402 Sum_probs=67.8
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC-hhhHHHHHHHHHH-HhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI-AKGKKEFAREVKK-LGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~f~~e~~~-l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+.. +|+.||+|+++... .....++..|++. ++..+|||++++++++...+. .++|||||+
T Consensus 6 ~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~--~~lv~e~~~ 83 (283)
T cd06617 6 IEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGD--VWICMEVMD 83 (283)
T ss_pred EEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCc--EEEEhhhhc
Confidence 467999999999999974 79999999986432 2234556667765 566789999999999987776 999999997
Q ss_pred CCCHHHHHhc
Q 003307 814 AQSLAVYLQG 823 (832)
Q Consensus 814 ~GsL~~~l~~ 823 (832)
|+|.++++.
T Consensus 84 -~~l~~~l~~ 92 (283)
T cd06617 84 -TSLDKFYKK 92 (283)
T ss_pred -ccHHHHHHH
Confidence 688888764
|
Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs |
| >cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-07 Score=99.98 Aligned_cols=90 Identities=22% Similarity=0.294 Sum_probs=69.5
Q ss_pred eeeeccCceEEEEEE-CCCCEEEEEEeccCCh---hhHHHHHHHHH---HHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 739 VIGRSCHGTLYKATL-DSGSILAVKRLREGIA---KGKKEFAREVK---KLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~f~~e~~---~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
+||+|+||.||+|.. .+|+.||+|.+..... .....+..|.. .++...||+|+++++++...+. .++||||
T Consensus 1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~v~e~ 78 (278)
T cd05606 1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDK--LSFILDL 78 (278)
T ss_pred CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCE--EEEEEec
Confidence 489999999999986 4789999998854321 12223444443 3445689999999999987776 9999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
+++|+|.+++...+.++|.
T Consensus 79 ~~g~~L~~~l~~~~~l~~~ 97 (278)
T cd05606 79 MNGGDLHYHLSQHGVFSEA 97 (278)
T ss_pred CCCCcHHHHHHhcCCCCHH
Confidence 9999999999877777664
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co |
| >cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6 | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.3e-07 Score=101.72 Aligned_cols=83 Identities=23% Similarity=0.360 Sum_probs=67.4
Q ss_pred cCeeeeccCceEEEEEEC---CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD---SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
+..||+|+||.||+|+.. ++..||+|.+.... ....+.+|++++++++||||+++++++........++|+||++
T Consensus 6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~ 83 (317)
T cd07867 6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG--ISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAE 83 (317)
T ss_pred ceEeccCCCeeEEEEEecCCCccceEEEEEecCCC--CcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeC
Confidence 567999999999999963 45789999986432 2346789999999999999999999986544434899999998
Q ss_pred CCCHHHHHh
Q 003307 814 AQSLAVYLQ 822 (832)
Q Consensus 814 ~GsL~~~l~ 822 (832)
+ +|.+++.
T Consensus 84 ~-~l~~~~~ 91 (317)
T cd07867 84 H-DLWHIIK 91 (317)
T ss_pred C-cHHHHHH
Confidence 5 7888775
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as |
| >cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.6e-07 Score=98.72 Aligned_cols=86 Identities=23% Similarity=0.407 Sum_probs=72.2
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCC----CceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPK----EHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~----~~~~~lv~e 810 (832)
...||+|+||.||+|... +++.+|+|.+..... ..+.|.+|+++++++ +|+||+++++++.... ....++|||
T Consensus 11 ~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e 89 (275)
T cd06608 11 VEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIED-EEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDDQLWLVME 89 (275)
T ss_pred eeeecCCCCeEEEEEEECCCCcEEEEEEEecCch-hHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcceEEEEEEE
Confidence 678999999999999974 788999999865433 346799999999999 7999999999997543 223799999
Q ss_pred cCCCCCHHHHHhc
Q 003307 811 YINAQSLAVYLQG 823 (832)
Q Consensus 811 ~~~~GsL~~~l~~ 823 (832)
|+++|+|.++++.
T Consensus 90 ~~~~~~L~~~~~~ 102 (275)
T cd06608 90 LCGGGSVTDLVKG 102 (275)
T ss_pred cCCCCcHHHHHHH
Confidence 9999999999875
|
Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I |
| >cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8 | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-07 Score=101.59 Aligned_cols=83 Identities=24% Similarity=0.361 Sum_probs=67.6
Q ss_pred cCeeeeccCceEEEEEEC---CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD---SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
+..||+|+||.||+|+.. +++.||+|.++... ....+.+|++++++++||||+++++++........++|+||++
T Consensus 6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~ 83 (317)
T cd07868 6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE 83 (317)
T ss_pred ccccccCCCeEEEEEEEccCCCCceEEEEEECCCC--CcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccC
Confidence 567999999999999863 56889999986432 2345789999999999999999999986544434899999997
Q ss_pred CCCHHHHHh
Q 003307 814 AQSLAVYLQ 822 (832)
Q Consensus 814 ~GsL~~~l~ 822 (832)
+ +|.+++.
T Consensus 84 ~-~l~~~~~ 91 (317)
T cd07868 84 H-DLWHIIK 91 (317)
T ss_pred C-CHHHHHH
Confidence 5 8888875
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p |
| >cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-07 Score=101.99 Aligned_cols=84 Identities=21% Similarity=0.226 Sum_probs=71.2
Q ss_pred eeeec--cCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 739 VIGRS--CHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 739 ~iG~G--~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.||+| +||+||+++. .+|+.||||..... .....+.+.+|+.++..++||||+++++++...+. .++|+|||+
T Consensus 5 ~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~--~~~v~e~~~ 82 (328)
T cd08226 5 EIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSW--LWVISPFMA 82 (328)
T ss_pred HhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCc--eEEEEeccc
Confidence 46666 9999999997 48999999998543 22334678999999999999999999999998777 999999999
Q ss_pred CCCHHHHHhcC
Q 003307 814 AQSLAVYLQGK 824 (832)
Q Consensus 814 ~GsL~~~l~~~ 824 (832)
+|+|.+++...
T Consensus 83 ~~~l~~~l~~~ 93 (328)
T cd08226 83 YGSANSLLKTY 93 (328)
T ss_pred CCCHHHHHHhh
Confidence 99999998764
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig |
| >KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.7e-08 Score=99.15 Aligned_cols=91 Identities=21% Similarity=0.318 Sum_probs=74.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEEC---CCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWG---PKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~---~~~~~~~lv~e 810 (832)
...||+|+||.|.+++. .+|+.||||++... ..-..+.-.+|++.|+.++|+||+.+...... .+.++.|+|+|
T Consensus 27 ~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~DvYiV~e 106 (359)
T KOG0660|consen 27 IEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFNDVYLVFE 106 (359)
T ss_pred cccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccceeEEehh
Confidence 35699999999999997 58999999998532 23345667899999999999999999998865 23346999999
Q ss_pred cCCCCCHHHHHhcCCCcc
Q 003307 811 YINAQSLAVYLQGKGLVL 828 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~~l~ 828 (832)
+|+- +|+..++....++
T Consensus 107 lMet-DL~~iik~~~~L~ 123 (359)
T KOG0660|consen 107 LMET-DLHQIIKSQQDLT 123 (359)
T ss_pred HHhh-HHHHHHHcCcccc
Confidence 9964 8999998776554
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.7e-08 Score=108.48 Aligned_cols=86 Identities=22% Similarity=0.292 Sum_probs=74.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.-++|+|.||+||-|+. ++...+|||-+.....+..+-...||..-++++|+|||+.+|+|...++ .-|.||-+|||
T Consensus 580 rvVLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf--~kIFMEqVPGG 657 (1226)
T KOG4279|consen 580 RVVLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGF--FKIFMEQVPGG 657 (1226)
T ss_pred eEEeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCe--EEEEeecCCCC
Confidence 34799999999999996 4566799999976655556678899999999999999999999987776 88999999999
Q ss_pred CHHHHHhcC
Q 003307 816 SLAVYLQGK 824 (832)
Q Consensus 816 sL~~~l~~~ 824 (832)
||.++|+.+
T Consensus 658 SLSsLLrsk 666 (1226)
T KOG4279|consen 658 SLSSLLRSK 666 (1226)
T ss_pred cHHHHHHhc
Confidence 999999853
|
|
| >cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.1e-08 Score=100.15 Aligned_cols=85 Identities=19% Similarity=0.403 Sum_probs=73.2
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|+||.||+++. .+|+.+|+|.+... ......++.+|++++++++|+||+++.+++..... .++||||++
T Consensus 5 ~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~--~~~v~e~~~ 82 (256)
T cd08530 5 LKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNK--LCIVMEYAP 82 (256)
T ss_pred eeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCE--EEEEehhcC
Confidence 56799999999999986 48899999998643 23345678899999999999999999999887766 999999999
Q ss_pred CCCHHHHHhc
Q 003307 814 AQSLAVYLQG 823 (832)
Q Consensus 814 ~GsL~~~l~~ 823 (832)
+++|.+++.+
T Consensus 83 ~~~L~~~~~~ 92 (256)
T cd08530 83 FGDLSKAISK 92 (256)
T ss_pred CCCHHHHHHH
Confidence 9999999876
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an |
| >cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1 | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-07 Score=101.07 Aligned_cols=93 Identities=22% Similarity=0.321 Sum_probs=73.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh--hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA--KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|+||.||+|... +|+.+|+|.++.... .....+.+|++++.+++||||+++++++...+....++||||++
T Consensus 10 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv~e~~~ 89 (293)
T cd07843 10 LNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMVMEYVE 89 (293)
T ss_pred hhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEEehhcC
Confidence 567999999999999985 789999999854321 22345788999999999999999999998763233999999998
Q ss_pred CCCHHHHHhcCC-Ccccc
Q 003307 814 AQSLAVYLQGKG-LVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~-~l~w~ 830 (832)
++|.+++.... .++|.
T Consensus 90 -~~L~~~~~~~~~~l~~~ 106 (293)
T cd07843 90 -HDLKSLMETMKQPFLQS 106 (293)
T ss_pred -cCHHHHHHhccCCCCHH
Confidence 59999987643 35553
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the |
| >PLN00009 cyclin-dependent kinase A; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.6e-07 Score=99.96 Aligned_cols=86 Identities=24% Similarity=0.350 Sum_probs=71.8
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|++|.||+|+.. +|+.||+|++.... ....+.+.+|++++++++|+||+++++++...+. .++||||++
T Consensus 7 ~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~ 84 (294)
T PLN00009 7 VEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKR--LYLVFEYLD 84 (294)
T ss_pred EEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCe--EEEEEeccc
Confidence 567999999999999974 79999999885432 2234678899999999999999999999988777 999999997
Q ss_pred CCCHHHHHhcCC
Q 003307 814 AQSLAVYLQGKG 825 (832)
Q Consensus 814 ~GsL~~~l~~~~ 825 (832)
++|.+++....
T Consensus 85 -~~l~~~~~~~~ 95 (294)
T PLN00009 85 -LDLKKHMDSSP 95 (294)
T ss_pred -ccHHHHHHhCC
Confidence 58888876544
|
|
| >cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.9e-08 Score=102.55 Aligned_cols=91 Identities=22% Similarity=0.366 Sum_probs=74.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh-hhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA-KGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|++|.||+|+.. +++.||||++..... .......+|++.+.+++ |+|++++++++...+. .++||||+
T Consensus 4 ~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~--~~lv~e~~- 80 (283)
T cd07830 4 IKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDE--LYFVFEYM- 80 (283)
T ss_pred heeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCc--EEEEEecC-
Confidence 467999999999999985 688999999854322 22334567999999999 9999999999988776 99999999
Q ss_pred CCCHHHHHhcCC--Ccccc
Q 003307 814 AQSLAVYLQGKG--LVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~--~l~w~ 830 (832)
+|+|.++++... .++|.
T Consensus 81 ~~~l~~~~~~~~~~~~~~~ 99 (283)
T cd07830 81 EGNLYQLMKDRKGKPFSES 99 (283)
T ss_pred CCCHHHHHHhcccccCCHH
Confidence 889999998764 55553
|
Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili |
| >cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-07 Score=100.03 Aligned_cols=90 Identities=24% Similarity=0.334 Sum_probs=74.2
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECC--CCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGP--KEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~--~~~~~~lv~e~ 811 (832)
...||+|+||.||+|+.. +|+.+|||++.... ....+.+.+|++++.+++|+|++++++++... +. .++||||
T Consensus 4 ~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~--~~lv~e~ 81 (287)
T cd07840 4 IAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGS--IYMVFEY 81 (287)
T ss_pred eEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCc--EEEEecc
Confidence 357999999999999975 68999999996542 33346788999999999999999999999877 45 9999999
Q ss_pred CCCCCHHHHHhcC-CCccc
Q 003307 812 INAQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~-~~l~w 829 (832)
+++ +|.+++... ..++|
T Consensus 82 ~~~-~l~~~~~~~~~~~~~ 99 (287)
T cd07840 82 MDH-DLTGLLDSPEVKFTE 99 (287)
T ss_pred ccc-cHHHHHhccCCCCCH
Confidence 985 899988765 34544
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po |
| >cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15 | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-07 Score=103.52 Aligned_cols=91 Identities=19% Similarity=0.354 Sum_probs=73.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|... +|..+|||++... .......+.+|+.++.++ +||||++++++|...+....++||||+
T Consensus 12 ~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~~lv~e~~ 91 (337)
T cd07852 12 LQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDIYLVFEYM 91 (337)
T ss_pred hHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceEEEEeccc
Confidence 578999999999999975 7899999988432 222345678899999999 999999999998765433489999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
+ |+|.++++.. .++|
T Consensus 92 ~-~~L~~~~~~~-~~~~ 106 (337)
T cd07852 92 E-TDLHAVIRAN-ILED 106 (337)
T ss_pred c-cCHHHHHhcC-CCCH
Confidence 8 5999998765 5555
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul |
| >cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3 | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.7e-07 Score=98.52 Aligned_cols=87 Identities=25% Similarity=0.402 Sum_probs=69.8
Q ss_pred cCeeeeccCceEEEEEEC----CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCc----eEE
Q 003307 737 AEVIGRSCHGTLYKATLD----SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEH----EKL 806 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~----~~~ 806 (832)
.++||+|+||.||+|... +|+.||||.+... .....+++.+|++++++++||||+++++++...+.. ..+
T Consensus 4 ~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~ 83 (273)
T cd05074 4 GRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLPIPM 83 (273)
T ss_pred hhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCcccceE
Confidence 467999999999999862 4688999988543 233456789999999999999999999998654321 247
Q ss_pred EEEecCCCCCHHHHHhc
Q 003307 807 VISNYINAQSLAVYLQG 823 (832)
Q Consensus 807 lv~e~~~~GsL~~~l~~ 823 (832)
+++||+++|+|.+++..
T Consensus 84 ~~~~~~~~~~l~~~~~~ 100 (273)
T cd05074 84 VILPFMKHGDLHTFLLM 100 (273)
T ss_pred EEEecCCCCcHHHHHHH
Confidence 89999999999998753
|
Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac |
| >KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.2e-08 Score=97.91 Aligned_cols=87 Identities=22% Similarity=0.394 Sum_probs=70.9
Q ss_pred CeeeeccCceEEEEEE-CCCCEEEEEEeccCCh--hhHHHHHHHHHHHhcCCCCc-ceeeeeEEECCCC----ceEEEEE
Q 003307 738 EVIGRSCHGTLYKATL-DSGSILAVKRLREGIA--KGKKEFAREVKKLGNIKHPN-LVSLQGYYWGPKE----HEKLVIS 809 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~f~~e~~~l~~~~H~n-iv~l~g~~~~~~~----~~~~lv~ 809 (832)
+.||+|.||+||+|+. .+|+.||+|+++.... +....-.+|+-++.+++|+| ||+|.+++.+.+. ...++|+
T Consensus 17 eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~~l~lvf 96 (323)
T KOG0594|consen 17 EKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIGKLYLVF 96 (323)
T ss_pred HHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccceEEEEE
Confidence 4599999999999996 5899999999864322 33455689999999999999 9999999987661 1288999
Q ss_pred ecCCCCCHHHHHhcCC
Q 003307 810 NYINAQSLAVYLQGKG 825 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~ 825 (832)
||+.. +|.+++....
T Consensus 97 e~~d~-DL~~ymd~~~ 111 (323)
T KOG0594|consen 97 EFLDR-DLKKYMDSLP 111 (323)
T ss_pred Eeecc-cHHHHHHhcc
Confidence 99986 8888886543
|
|
| >PTZ00036 glycogen synthase kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-07 Score=106.63 Aligned_cols=81 Identities=23% Similarity=0.446 Sum_probs=63.7
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCC------CceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK------EHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~------~~~~~lv~ 809 (832)
.+.||+|+||.||+|+. .+|+.||||++.... ....+|+.++++++|||||++++++.... ....++||
T Consensus 71 ~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~----~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l~lvm 146 (440)
T PTZ00036 71 GNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP----QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNIFLNVVM 146 (440)
T ss_pred eEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHhcCCCCCcceeeeEeecccccCCCceEEEEEE
Confidence 67899999999999997 478999999885432 23457999999999999999999875421 11266899
Q ss_pred ecCCCCCHHHHHh
Q 003307 810 NYINAQSLAVYLQ 822 (832)
Q Consensus 810 e~~~~GsL~~~l~ 822 (832)
||+++ +|.+++.
T Consensus 147 E~~~~-~l~~~~~ 158 (440)
T PTZ00036 147 EFIPQ-TVHKYMK 158 (440)
T ss_pred ecCCc-cHHHHHH
Confidence 99995 7777764
|
|
| >cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-07 Score=99.11 Aligned_cols=93 Identities=18% Similarity=0.289 Sum_probs=72.1
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI-AKGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|+||.||+|+. .+++.||+|+++... ........+|+.++.++. |+|++++++++.+...+..++|+||++
T Consensus 4 ~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e~~~ 83 (282)
T cd07831 4 LGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFELMD 83 (282)
T ss_pred EeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEecCC
Confidence 45699999999999997 478999999986432 222334567899999885 999999999998772223999999998
Q ss_pred CCCHHHHHhcC-CCcccc
Q 003307 814 AQSLAVYLQGK-GLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~-~~l~w~ 830 (832)
|+|.+++..+ ..++|.
T Consensus 84 -~~l~~~l~~~~~~~~~~ 100 (282)
T cd07831 84 -MNLYELIKGRKRPLPEK 100 (282)
T ss_pred -ccHHHHHHhccCCCCHH
Confidence 6888888764 456664
|
Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. |
| >cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5 | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.6e-08 Score=101.80 Aligned_cols=91 Identities=29% Similarity=0.350 Sum_probs=73.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+. .+|+.||+|+++... ......+.+|++++++++|||++++++++..... .++|+||++
T Consensus 5 ~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~ 82 (284)
T cd07839 5 LEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKK--LTLVFEYCD 82 (284)
T ss_pred EEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCc--eEEEEecCC
Confidence 45799999999999997 479999999885321 2223567889999999999999999999987776 999999998
Q ss_pred CCCHHHHHhc-CCCcccc
Q 003307 814 AQSLAVYLQG-KGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~-~~~l~w~ 830 (832)
|+|.++++. ...++|.
T Consensus 83 -~~l~~~~~~~~~~~~~~ 99 (284)
T cd07839 83 -QDLKKYFDSCNGDIDPE 99 (284)
T ss_pred -CCHHHHHHhcCCCCCHH
Confidence 588888764 3445543
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also |
| >PHA03211 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-07 Score=106.59 Aligned_cols=85 Identities=13% Similarity=0.116 Sum_probs=71.0
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+.. +++.||||.... ..+.+|++++++++|+|||++++++...+. .++||||+. |
T Consensus 174 ~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~------~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~--~~lv~e~~~-~ 244 (461)
T PHA03211 174 HRALTPGSEGCVFESSHPDYPQRVVVKAGWY------ASSVHEARLLRRLSHPAVLALLDVRVVGGL--TCLVLPKYR-S 244 (461)
T ss_pred EEEEccCCCeEEEEEEECCCCCEEEEecccc------cCHHHHHHHHHHCCCCCCCcEEEEEEECCE--EEEEEEccC-C
Confidence 567999999999999985 689999996422 346789999999999999999999987776 899999995 7
Q ss_pred CHHHHHhcC-CCcccc
Q 003307 816 SLAVYLQGK-GLVLWF 830 (832)
Q Consensus 816 sL~~~l~~~-~~l~w~ 830 (832)
+|.+++... +.++|.
T Consensus 245 ~L~~~l~~~~~~l~~~ 260 (461)
T PHA03211 245 DLYTYLGARLRPLGLA 260 (461)
T ss_pred CHHHHHHhcCCCCCHH
Confidence 999988754 456664
|
|
| >cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12 | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-07 Score=100.16 Aligned_cols=92 Identities=23% Similarity=0.280 Sum_probs=72.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCC--------CceE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK--------EHEK 805 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~--------~~~~ 805 (832)
.+.||+|+||.||+|+.. +|+.||||+++... ......+.+|++++++++|||++++++++.... ....
T Consensus 12 ~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (302)
T cd07864 12 IGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALDFKKDKGAF 91 (302)
T ss_pred eeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhhccccCCcE
Confidence 678999999999999984 78999999985432 223456788999999999999999999987654 1138
Q ss_pred EEEEecCCCCCHHHHHhcC-CCccc
Q 003307 806 LVISNYINAQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 806 ~lv~e~~~~GsL~~~l~~~-~~l~w 829 (832)
++|+||+++ ++.+.+... ..++|
T Consensus 92 ~lv~e~~~~-~l~~~l~~~~~~~~~ 115 (302)
T cd07864 92 YLVFEYMDH-DLMGLLESGLVHFSE 115 (302)
T ss_pred EEEEcccCc-cHHHHHhcCCCCCCH
Confidence 999999986 777777653 34554
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely |
| >cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3 | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.8e-07 Score=99.01 Aligned_cols=91 Identities=25% Similarity=0.366 Sum_probs=73.6
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+. .+|..||+|++... .....+.+.+|++++++++|||++++++++.+.+. .++||||+
T Consensus 26 ~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~ 103 (313)
T cd06633 26 LHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHT--AWLVMEYC 103 (313)
T ss_pred ceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCE--EEEEEecC
Confidence 45699999999999997 47899999998532 22234568899999999999999999999988776 99999999
Q ss_pred CCCCHHHHHhc-CCCcccc
Q 003307 813 NAQSLAVYLQG-KGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~-~~~l~w~ 830 (832)
+ |++.+++.. ...++|.
T Consensus 104 ~-~~l~~~l~~~~~~l~~~ 121 (313)
T cd06633 104 L-GSASDLLEVHKKPLQEV 121 (313)
T ss_pred C-CCHHHHHHhcCCCCCHH
Confidence 7 688888764 3445553
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.2e-08 Score=115.83 Aligned_cols=135 Identities=23% Similarity=0.258 Sum_probs=102.5
Q ss_pred ccccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCC--CCccCcccccCCCCCCEEEcccccccccCCCCCCCCC
Q 003307 84 PTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNL--FHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLG 161 (832)
Q Consensus 84 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 161 (832)
+...+....+.+.+-+|.+..... -..++.|++|-+..|. +..+..+.|..++.|++|||++|.=-+.+|..+++|-
T Consensus 517 ~~~~~~~~~rr~s~~~~~~~~~~~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 517 PQVKSWNSVRRMSLMNNKIEHIAG-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV 595 (889)
T ss_pred ccccchhheeEEEEeccchhhccC-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence 345556677888888887764332 2234579999999886 5655566688899999999999877678999999999
Q ss_pred CCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCC
Q 003307 162 KLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENS 223 (832)
Q Consensus 162 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~ 223 (832)
+|++|+|++..+. .+|..+++|..|.+|++..+.-...++ +....+++|++|.+....
T Consensus 596 ~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~---~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 596 HLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIP---GILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhhcccccCCCcc-ccchHHHHHHhhheecccccccccccc---chhhhcccccEEEeeccc
Confidence 9999999999987 788899999999999998877553332 223346888888876654
|
|
| >cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10 | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.3e-07 Score=99.45 Aligned_cols=93 Identities=27% Similarity=0.333 Sum_probs=72.9
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|+||.||+|.. .+|+.||+|.++... ......+.+|++++.+++|+|++++++++...+....++||||++
T Consensus 12 ~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~ 91 (309)
T cd07845 12 LNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFLVMEYCE 91 (309)
T ss_pred eeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEEEEecCC
Confidence 67899999999999997 479999999885332 112345678999999999999999999987654334899999998
Q ss_pred CCCHHHHHhcC-CCcccc
Q 003307 814 AQSLAVYLQGK-GLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~-~~l~w~ 830 (832)
+ +|.+++... ..++|.
T Consensus 92 ~-~l~~~l~~~~~~l~~~ 108 (309)
T cd07845 92 Q-DLASLLDNMPTPFSES 108 (309)
T ss_pred C-CHHHHHHhcccCCCHH
Confidence 4 898888753 445553
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing |
| >KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.2e-08 Score=96.48 Aligned_cols=92 Identities=20% Similarity=0.275 Sum_probs=77.7
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC--------hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI--------AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKL 806 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--------~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~ 806 (832)
.+++|+|..+.|.++.. ++|..+|+|++.... ....+.-..|+.+|+++ .||+|+++..+|.++.. .+
T Consensus 22 keilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~sF--~F 99 (411)
T KOG0599|consen 22 KEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESDAF--VF 99 (411)
T ss_pred HHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCcch--hh
Confidence 67899999999999986 589999999985321 11234567899999998 69999999999998888 99
Q ss_pred EEEecCCCCCHHHHHhcCCCcccc
Q 003307 807 VISNYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 807 lv~e~~~~GsL~~~l~~~~~l~w~ 830 (832)
+|+|.|+.|.|+|+|..+.+++++
T Consensus 100 lVFdl~prGELFDyLts~VtlSEK 123 (411)
T KOG0599|consen 100 LVFDLMPRGELFDYLTSKVTLSEK 123 (411)
T ss_pred hhhhhcccchHHHHhhhheeecHH
Confidence 999999999999999988777664
|
|
| >cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.6e-07 Score=102.17 Aligned_cols=92 Identities=17% Similarity=0.309 Sum_probs=73.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC---ceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE---HEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~---~~~~lv~e 810 (832)
...||+|+||.||+|+. .+|+.||||++... .......+.+|++++.+++|+||+++++++..... ...++|||
T Consensus 10 ~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~lv~e 89 (337)
T cd07858 10 IKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFNDVYIVYE 89 (337)
T ss_pred EEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCcEEEEEe
Confidence 56899999999999996 58999999998542 22234567889999999999999999998865421 13799999
Q ss_pred cCCCCCHHHHHhcCCCccc
Q 003307 811 YINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~~l~w 829 (832)
|+. ++|.+++...+++++
T Consensus 90 ~~~-~~L~~~~~~~~~l~~ 107 (337)
T cd07858 90 LMD-TDLHQIIRSSQTLSD 107 (337)
T ss_pred CCC-CCHHHHHhcCCCCCH
Confidence 997 689999887666654
|
Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati |
| >KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.9e-07 Score=105.18 Aligned_cols=94 Identities=19% Similarity=0.323 Sum_probs=75.8
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCC---ceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKE---HEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~---~~~~lv~e~ 811 (832)
.++||.|.+|+|||++. ++|+.+|||++..... ..++...|.+++... .|||++.++|++.-.+. ++.+|||||
T Consensus 24 ~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d-~deEiE~eynil~~~~~hpnv~~fyg~~~k~~~~~~DqLWLVMEf 102 (953)
T KOG0587|consen 24 IEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTED-EEEEIELEYNMLKKYSHHPNVATFYGAFIKKDPGNGDQLWLVMEF 102 (953)
T ss_pred EEEEeeccceeEEEEeeeecCceeeeEeecCCcc-ccHHHHHHHHHHHhccCCCCcceEEEEEEEecCCCCCeEEEEeec
Confidence 56899999999999985 6899999998864433 356788899998876 79999999999864332 259999999
Q ss_pred CCCCCHHHHHhcC--CCccccc
Q 003307 812 INAQSLAVYLQGK--GLVLWFY 831 (832)
Q Consensus 812 ~~~GsL~~~l~~~--~~l~w~~ 831 (832)
|.+||.-|++.+- .++.|.+
T Consensus 103 C~gGSVTDLVKn~~g~rl~E~~ 124 (953)
T KOG0587|consen 103 CGGGSVTDLVKNTKGNRLKEEW 124 (953)
T ss_pred cCCccHHHHHhhhcccchhhHH
Confidence 9999999998753 4566654
|
|
| >KOG0584 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.1e-08 Score=106.12 Aligned_cols=92 Identities=23% Similarity=0.347 Sum_probs=75.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEec--c--CChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLR--E--GIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~--~--~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
..+||+|+|-+||||... +|..||.-.++ + ......+.|..|+++|+.++|+|||+++.++.+......-+|.|.
T Consensus 45 ~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTEL 124 (632)
T KOG0584|consen 45 DEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITEL 124 (632)
T ss_pred hhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeeec
Confidence 568999999999999974 78888854332 1 123345789999999999999999999999987766568899999
Q ss_pred CCCCCHHHHHhcCCCcc
Q 003307 812 INAQSLAVYLQGKGLVL 828 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~ 828 (832)
|+.|+|..++.+.+.++
T Consensus 125 ~TSGtLr~Y~kk~~~vn 141 (632)
T KOG0584|consen 125 FTSGTLREYRKKHRRVN 141 (632)
T ss_pred ccCCcHHHHHHHhccCC
Confidence 99999999998877654
|
|
| >cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9 | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.7e-07 Score=98.92 Aligned_cols=92 Identities=23% Similarity=0.239 Sum_probs=71.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC------ceEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE------HEKLV 807 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~------~~~~l 807 (832)
...||+|+||.||+|+.. +|+.||||.+... .......+.+|++++++++||||++++++|...+. ...++
T Consensus 17 ~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~l 96 (310)
T cd07865 17 LAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRYKGSFYL 96 (310)
T ss_pred EEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCCCceEEE
Confidence 567999999999999974 7999999988532 22223456789999999999999999999876543 13599
Q ss_pred EEecCCCCCHHHHHhcCC-Cccc
Q 003307 808 ISNYINAQSLAVYLQGKG-LVLW 829 (832)
Q Consensus 808 v~e~~~~GsL~~~l~~~~-~l~w 829 (832)
||||+++ +|.+++.... .++|
T Consensus 97 v~e~~~~-~l~~~l~~~~~~~~~ 118 (310)
T cd07865 97 VFEFCEH-DLAGLLSNKNVKFTL 118 (310)
T ss_pred EEcCCCc-CHHHHHHhcccCCCH
Confidence 9999985 8888887543 4444
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl |
| >PHA03390 pk1 serine/threonine-protein kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3e-07 Score=96.28 Aligned_cols=84 Identities=15% Similarity=0.104 Sum_probs=65.4
Q ss_pred eeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhc-CCCCcceeeeeEEECCCCceEEEEEecCCCCCH
Q 003307 740 IGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGN-IKHPNLVSLQGYYWGPKEHEKLVISNYINAQSL 817 (832)
Q Consensus 740 iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~-~~H~niv~l~g~~~~~~~~~~~lv~e~~~~GsL 817 (832)
+|+|+||.||+++. .+|..+|+|......... . |+..... .+|||++++++++...+. .++||||+++|+|
T Consensus 24 lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~---~--e~~~~~~~~~h~~iv~~~~~~~~~~~--~~iv~e~~~~~~L 96 (267)
T PHA03390 24 LIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNA---I--EPMVHQLMKDNPNFIKLYYSVTTLKG--HVLIMDYIKDGDL 96 (267)
T ss_pred ecCCCceEEEEEEEcCCCcEEEEEEEehhhcch---h--hHHHHHHhhcCCCEEEEEEEEecCCe--eEEEEEcCCCCcH
Confidence 69999999999997 478999999985432111 1 2222221 279999999999988776 9999999999999
Q ss_pred HHHHhcCCCcccc
Q 003307 818 AVYLQGKGLVLWF 830 (832)
Q Consensus 818 ~~~l~~~~~l~w~ 830 (832)
.++++....++|+
T Consensus 97 ~~~l~~~~~l~~~ 109 (267)
T PHA03390 97 FDLLKKEGKLSEA 109 (267)
T ss_pred HHHHHhcCCCCHH
Confidence 9999887777764
|
|
| >PRK10345 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.6e-07 Score=91.63 Aligned_cols=85 Identities=16% Similarity=0.184 Sum_probs=66.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcC-----CCCcceeeeeEEECCCC-ceEE-EE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNI-----KHPNLVSLQGYYWGPKE-HEKL-VI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~-----~H~niv~l~g~~~~~~~-~~~~-lv 808 (832)
...||+|+||.||+ .+ ++.. +||++........+++.+|++++..+ .||||++++|++.+... ...+ +|
T Consensus 7 ~~~LG~G~~~~Vy~--hp~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~~I 83 (210)
T PRK10345 7 QSPLGTGRHRKCYA--HPEDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYDVI 83 (210)
T ss_pred cceecCCCceEEEE--CCCCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEEEE
Confidence 67899999999996 43 4444 79988654344567899999999999 67999999999987642 1234 78
Q ss_pred Eec--CCCCCHHHHHhcC
Q 003307 809 SNY--INAQSLAVYLQGK 824 (832)
Q Consensus 809 ~e~--~~~GsL~~~l~~~ 824 (832)
+|| +++|+|.+++.+.
T Consensus 84 ~e~~G~~~~tL~~~l~~~ 101 (210)
T PRK10345 84 ADFDGKPSITLTEFAEQC 101 (210)
T ss_pred ecCCCCcchhHHHHHHcc
Confidence 999 6689999999653
|
|
| >cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11 | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.2e-08 Score=99.69 Aligned_cols=85 Identities=19% Similarity=0.319 Sum_probs=68.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC-----ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG-----IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~-----~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
...||+|+||.||+++.. .+..+++|.++.. ......++..|+.++++++||||+++++++...+. .++|||
T Consensus 5 ~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e 82 (260)
T cd08222 5 QQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDA--FCIITE 82 (260)
T ss_pred eeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCc--eEEEEE
Confidence 467999999999999863 4555666665421 22234457789999999999999999999987776 899999
Q ss_pred cCCCCCHHHHHhc
Q 003307 811 YINAQSLAVYLQG 823 (832)
Q Consensus 811 ~~~~GsL~~~l~~ 823 (832)
|+++++|.++++.
T Consensus 83 ~~~~~~l~~~~~~ 95 (260)
T cd08222 83 YCEGRDLDCKLEE 95 (260)
T ss_pred eCCCCCHHHHHHH
Confidence 9999999999864
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check |
| >cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5 | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.5e-07 Score=102.23 Aligned_cols=93 Identities=22% Similarity=0.292 Sum_probs=74.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCC--CceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK--EHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~--~~~~~lv~e~ 811 (832)
...||+|+||.||+|.. .+|..||+|++.... ....+.+.+|++++.+++||||+++++++.... ....++|+||
T Consensus 10 ~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~ 89 (334)
T cd07855 10 IENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVYVVMDL 89 (334)
T ss_pred eeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEEEEEeh
Confidence 56799999999999997 479999999985432 223456788999999999999999999876432 1238999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
++ |+|.++++..+.+++.
T Consensus 90 ~~-~~l~~~~~~~~~~~~~ 107 (334)
T cd07855 90 ME-SDLHHIIHSDQPLTEE 107 (334)
T ss_pred hh-hhHHHHhccCCCCCHH
Confidence 96 6999999877766653
|
Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the |
| >cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1 | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.9e-07 Score=98.56 Aligned_cols=85 Identities=22% Similarity=0.355 Sum_probs=69.2
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|.. .+|+.||||++... .....+.+.+|++++.+++||||+++.++|..... ..++|+||+.
T Consensus 15 ~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~-~~~lv~e~~~ 93 (328)
T cd07856 15 LQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLE-DIYFVTELLG 93 (328)
T ss_pred EEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCC-cEEEEeehhc
Confidence 67899999999999986 48999999987532 22234678899999999999999999999875332 2899999995
Q ss_pred CCCHHHHHhc
Q 003307 814 AQSLAVYLQG 823 (832)
Q Consensus 814 ~GsL~~~l~~ 823 (832)
++|.++++.
T Consensus 94 -~~L~~~~~~ 102 (328)
T cd07856 94 -TDLHRLLTS 102 (328)
T ss_pred -cCHHHHHhc
Confidence 689988864
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U |
| >cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6 | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.4e-07 Score=96.26 Aligned_cols=87 Identities=28% Similarity=0.382 Sum_probs=65.1
Q ss_pred cCeeeeccCceEEEEEE-C-CCCEEEEEEeccCC--hhhHHHHHHHHHHHhcC---CCCcceeeeeEEECC---CCceEE
Q 003307 737 AEVIGRSCHGTLYKATL-D-SGSILAVKRLREGI--AKGKKEFAREVKKLGNI---KHPNLVSLQGYYWGP---KEHEKL 806 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~-~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~---~H~niv~l~g~~~~~---~~~~~~ 806 (832)
.+.||+|+||.||+|+. . +|..||||+++... ......+.+|++++.++ +||||++++++|... .....+
T Consensus 6 ~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~~~~~ 85 (290)
T cd07862 6 VAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLT 85 (290)
T ss_pred eeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCCCcEE
Confidence 56799999999999986 3 57889999885322 22234566777777655 699999999998632 112389
Q ss_pred EEEecCCCCCHHHHHhcC
Q 003307 807 VISNYINAQSLAVYLQGK 824 (832)
Q Consensus 807 lv~e~~~~GsL~~~l~~~ 824 (832)
+|+||++ |+|.+++...
T Consensus 86 lv~e~~~-~~l~~~~~~~ 102 (290)
T cd07862 86 LVFEHVD-QDLTTYLDKV 102 (290)
T ss_pred EEEccCC-CCHHHHHHhC
Confidence 9999997 6999998753
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla |
| >cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.52 E-value=3e-07 Score=98.91 Aligned_cols=85 Identities=25% Similarity=0.396 Sum_probs=69.1
Q ss_pred cCeeeeccCceEEEEEE-C--CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-D--SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~--~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
...||+|+||.||+|+. . +|..||+|.+.... ....+.+.+|++++.+++||||++++++|...+....++|||
T Consensus 5 ~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e 84 (316)
T cd07842 5 EGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVYLLFD 84 (316)
T ss_pred EEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEEEEEe
Confidence 45799999999999997 3 58999999986532 223456788999999999999999999998873334999999
Q ss_pred cCCCCCHHHHHh
Q 003307 811 YINAQSLAVYLQ 822 (832)
Q Consensus 811 ~~~~GsL~~~l~ 822 (832)
|+++ +|.+++.
T Consensus 85 ~~~~-~l~~~~~ 95 (316)
T cd07842 85 YAEH-DLWQIIK 95 (316)
T ss_pred CCCc-CHHHHHH
Confidence 9985 6777664
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the |
| >cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6 | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.5e-07 Score=96.65 Aligned_cols=86 Identities=20% Similarity=0.372 Sum_probs=70.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCC----CceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPK----EHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~----~~~~~lv~e 810 (832)
...||+|+||.||+|+. .+++.+|+|...... ....++..|+.++.++ +|+|++++++++.... ....++|||
T Consensus 21 ~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e 99 (282)
T cd06636 21 VEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE-DEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVME 99 (282)
T ss_pred heeeccCCCeEEEEEEEcCCCcEEEEEEEecCh-HHHHHHHHHHHHHHHhcCCCcEEEEeeehhcccccCCCCEEEEEEE
Confidence 46799999999999997 478999999885432 2345688999999998 7999999999986421 224899999
Q ss_pred cCCCCCHHHHHhc
Q 003307 811 YINAQSLAVYLQG 823 (832)
Q Consensus 811 ~~~~GsL~~~l~~ 823 (832)
|+++|+|.+++..
T Consensus 100 ~~~~~~L~~~~~~ 112 (282)
T cd06636 100 FCGAGSVTDLVKN 112 (282)
T ss_pred eCCCCcHHHHHHH
Confidence 9999999999865
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea |
| >cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.7e-07 Score=101.53 Aligned_cols=93 Identities=18% Similarity=0.292 Sum_probs=76.6
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCC---CceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK---EHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~---~~~~~lv~e 810 (832)
...||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++..++|+||+++++++...+ ....++|||
T Consensus 5 ~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~lv~e 84 (330)
T cd07834 5 LKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVYIVTE 84 (330)
T ss_pred eeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceEEEec
Confidence 567999999999999975 68999999986532 334567999999999999999999999987764 113899999
Q ss_pred cCCCCCHHHHHhcCCCcccc
Q 003307 811 YINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~~l~w~ 830 (832)
|++ ++|.++++....++|.
T Consensus 85 ~~~-~~l~~~l~~~~~l~~~ 103 (330)
T cd07834 85 LME-TDLHKVIKSPQPLTDD 103 (330)
T ss_pred chh-hhHHHHHhCCCCCCHH
Confidence 999 5899999877666664
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and |
| >cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2 | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.7e-07 Score=99.37 Aligned_cols=86 Identities=23% Similarity=0.280 Sum_probs=68.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC----ceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE----HEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~----~~~~lv~ 809 (832)
...||+|+||.||+|+. .+|..||||++... .......+.+|+.++.+++||||+++++++...+. ...++||
T Consensus 26 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~ 105 (359)
T cd07876 26 LKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEFQDVYLVM 105 (359)
T ss_pred EEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCccccceeEEEE
Confidence 56899999999999987 47999999998543 22335678899999999999999999999865431 1379999
Q ss_pred ecCCCCCHHHHHhc
Q 003307 810 NYINAQSLAVYLQG 823 (832)
Q Consensus 810 e~~~~GsL~~~l~~ 823 (832)
||+++ +|.+.++.
T Consensus 106 e~~~~-~l~~~~~~ 118 (359)
T cd07876 106 ELMDA-NLCQVIHM 118 (359)
T ss_pred eCCCc-CHHHHHhc
Confidence 99985 57666653
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >PHA03207 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.1e-07 Score=101.97 Aligned_cols=86 Identities=19% Similarity=0.230 Sum_probs=71.3
Q ss_pred cCeeeeccCceEEEEEEC---CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD---SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|... .+..||||.+... +.+.+|++++.+++|||||++++++..... .++||||+.
T Consensus 97 ~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~-----~~~~~E~~il~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~ 169 (392)
T PHA03207 97 LSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG-----KTPGREIDILKTISHRAIINLIHAYRWKST--VCMVMPKYK 169 (392)
T ss_pred EEeecCCCCeEEEEEEEcCCccceeEEEEecccc-----ccHHHHHHHHHhcCCCCccceeeeEeeCCE--EEEEehhcC
Confidence 567999999999999752 4678999988542 235689999999999999999999887666 999999997
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
|+|.+++...+.++|.
T Consensus 170 -~~l~~~l~~~~~l~~~ 185 (392)
T PHA03207 170 -CDLFTYVDRSGPLPLE 185 (392)
T ss_pred -CCHHHHHHhcCCCCHH
Confidence 6899999777777764
|
|
| >cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.1e-07 Score=98.22 Aligned_cols=90 Identities=28% Similarity=0.417 Sum_probs=74.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+.. +|+.||+|.+.... ....+.+..|++++++++|+|++++++++...+. .++||||++
T Consensus 4 ~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~--~~~v~e~~~ 81 (282)
T cd07829 4 LEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERK--LYLVFEYCD 81 (282)
T ss_pred ehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCc--eEEEecCcC
Confidence 456999999999999975 69999999986432 2334678899999999999999999999988776 999999998
Q ss_pred CCCHHHHHhcC-CCccc
Q 003307 814 AQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~~-~~l~w 829 (832)
++|.++++.. ..+++
T Consensus 82 -~~l~~~i~~~~~~~~~ 97 (282)
T cd07829 82 -MDLKKYLDKRPGPLSP 97 (282)
T ss_pred -cCHHHHHHhhccCCCH
Confidence 5999999875 34444
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the |
| >cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.5e-07 Score=98.11 Aligned_cols=91 Identities=20% Similarity=0.271 Sum_probs=71.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC----ceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE----HEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~----~~~~lv~ 809 (832)
...||+|+||.||+|+. .+|..||||++... .....+.+.+|++++.+++||||+++++++..... ...++||
T Consensus 20 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~ 99 (343)
T cd07880 20 LKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRFHDFYLVM 99 (343)
T ss_pred EEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCccccccceEEEEE
Confidence 56799999999999986 48999999998532 22234568899999999999999999999865432 1358999
Q ss_pred ecCCCCCHHHHHhcCCCccc
Q 003307 810 NYINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~~l~w 829 (832)
||+ +++|.+++.. +.++|
T Consensus 100 e~~-~~~l~~~~~~-~~l~~ 117 (343)
T cd07880 100 PFM-GTDLGKLMKH-EKLSE 117 (343)
T ss_pred ecC-CCCHHHHHhc-CCCCH
Confidence 999 6799888764 34554
|
Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12 |
| >cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2 | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.1e-07 Score=96.17 Aligned_cols=90 Identities=21% Similarity=0.343 Sum_probs=72.6
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+. .++..+|+|.+... .....+++.+|++++++++|+|++++++++..... .++||||+
T Consensus 20 ~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~ 97 (308)
T cd06634 20 LREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHT--AWLVMEYC 97 (308)
T ss_pred HHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCe--eEEEEEcc
Confidence 45699999999999997 47899999988532 22334568899999999999999999999988776 99999999
Q ss_pred CCCCHHHHHhc-CCCccc
Q 003307 813 NAQSLAVYLQG-KGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~-~~~l~w 829 (832)
. |++.+++.. ...+++
T Consensus 98 ~-~~l~~~~~~~~~~l~~ 114 (308)
T cd06634 98 L-GSASDLLEVHKKPLQE 114 (308)
T ss_pred C-CCHHHHHHHcCCCCCH
Confidence 7 688887753 334444
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin |
| >KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.2e-08 Score=106.71 Aligned_cols=83 Identities=17% Similarity=0.326 Sum_probs=70.9
Q ss_pred CeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 738 EVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
.-+|.|+||+||||+.+ .+...|.|++........++|.-||++|+.+.||+||+|++.|+..+. .++..|||+||-
T Consensus 38 GELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enk--LwiliEFC~GGA 115 (1187)
T KOG0579|consen 38 GELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENK--LWILIEFCGGGA 115 (1187)
T ss_pred hhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCc--eEEEEeecCCch
Confidence 34789999999999975 566677888876666667889999999999999999999998877777 999999999998
Q ss_pred HHHHHh
Q 003307 817 LAVYLQ 822 (832)
Q Consensus 817 L~~~l~ 822 (832)
.+..+-
T Consensus 116 VDaiml 121 (1187)
T KOG0579|consen 116 VDAIML 121 (1187)
T ss_pred HhHHHH
Confidence 877654
|
|
| >cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4 | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.5e-07 Score=94.87 Aligned_cols=81 Identities=26% Similarity=0.406 Sum_probs=66.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI-AKGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+++. .+|+.||||.+.... ......+.+|+.++.++. |+||+++++++..... .++++||++
T Consensus 9 ~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~--~~~~~e~~~ 86 (288)
T cd06616 9 LGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGD--CWICMELMD 86 (288)
T ss_pred HHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCc--EEEEEeccc
Confidence 46799999999999997 478999999985432 234567899999999996 9999999999987766 899999987
Q ss_pred CCCHHHH
Q 003307 814 AQSLAVY 820 (832)
Q Consensus 814 ~GsL~~~ 820 (832)
. ++.++
T Consensus 87 ~-~l~~l 92 (288)
T cd06616 87 I-SLDKF 92 (288)
T ss_pred C-CHHHH
Confidence 4 55443
|
Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates |
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.8e-08 Score=111.96 Aligned_cols=92 Identities=16% Similarity=0.117 Sum_probs=77.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
-.+||+|+||.|...+.. +++++|+|++.++ ......-|..|-.+|.--..+-||.|...+.+..+ .|+|||||
T Consensus 80 lKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~~~--LYlVMdY~ 157 (1317)
T KOG0612|consen 80 LKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDERY--LYLVMDYM 157 (1317)
T ss_pred HHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCccc--eEEEEecc
Confidence 468999999999999984 8999999999653 12335669999999999999999999988888777 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
|||+|-.++-.-.+++++
T Consensus 158 pGGDlltLlSk~~~~pE~ 175 (1317)
T KOG0612|consen 158 PGGDLLTLLSKFDRLPED 175 (1317)
T ss_pred cCchHHHHHhhcCCChHH
Confidence 999999999876666543
|
|
| >KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.5e-07 Score=105.56 Aligned_cols=87 Identities=31% Similarity=0.419 Sum_probs=74.0
Q ss_pred cCeeeeccCceEEEEEEC----C----CCEEEEEEeccC-ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEE
Q 003307 737 AEVIGRSCHGTLYKATLD----S----GSILAVKRLREG-IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKL 806 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~----~----g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~ 806 (832)
...+|+|.||+|++|.+. . ...||||.++.. .....+.+..|+++|..+ +|+|+|.++|+|..... .+
T Consensus 301 ~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t~~~~--~~ 378 (609)
T KOG0200|consen 301 GKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACTQDGP--LY 378 (609)
T ss_pred cceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeeccCCc--eE
Confidence 448999999999999851 2 357999999654 234567899999999998 69999999999998666 99
Q ss_pred EEEecCCCCCHHHHHhcCC
Q 003307 807 VISNYINAQSLAVYLQGKG 825 (832)
Q Consensus 807 lv~e~~~~GsL~~~l~~~~ 825 (832)
+|.||+++|+|.++|+.++
T Consensus 379 ~v~Ey~~~G~L~~~Lr~~r 397 (609)
T KOG0200|consen 379 VIVEYAEHGDLLEFLRKKR 397 (609)
T ss_pred EEEEeccCCcHHHHHHhcc
Confidence 9999999999999999776
|
|
| >cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6 | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.2e-07 Score=98.95 Aligned_cols=86 Identities=21% Similarity=0.307 Sum_probs=70.2
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC------------c
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE------------H 803 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~------------~ 803 (832)
...||+|+||.||+|+. .+|+.||+|++........+.+.+|++++++++||||+++++++..... .
T Consensus 10 ~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (342)
T cd07854 10 LRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGSLTELN 89 (342)
T ss_pred EEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccccccccccc
Confidence 57899999999999997 4799999999865444455778999999999999999999987654321 1
Q ss_pred eEEEEEecCCCCCHHHHHhc
Q 003307 804 EKLVISNYINAQSLAVYLQG 823 (832)
Q Consensus 804 ~~~lv~e~~~~GsL~~~l~~ 823 (832)
..++|+||++ ++|.+++..
T Consensus 90 ~~~lv~e~~~-~~L~~~~~~ 108 (342)
T cd07854 90 SVYIVQEYME-TDLANVLEQ 108 (342)
T ss_pred eEEEEeeccc-ccHHHHHHc
Confidence 2689999998 589888754
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi |
| >PTZ00284 protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.2e-07 Score=102.01 Aligned_cols=91 Identities=15% Similarity=0.189 Sum_probs=69.2
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCC------CcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKH------PNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H------~niv~l~g~~~~~~~~~~~lv~ 809 (832)
.+.||+|+||+||+|+. .+++.||||+++... ...+++..|++++.+++| .+++++++|+..... ..++||
T Consensus 134 ~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~~~-~~~iv~ 211 (467)
T PTZ00284 134 LSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP-KYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNETG-HMCIVM 211 (467)
T ss_pred EEEEEeccCEEEEEEEEcCCCeEEEEEEEecch-hhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEcCCc-eEEEEE
Confidence 56899999999999997 478899999986432 223455667777766654 458899998876543 378999
Q ss_pred ecCCCCCHHHHHhcCCCcccc
Q 003307 810 NYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~~l~w~ 830 (832)
|++ +|+|.+++...+.++|+
T Consensus 212 ~~~-g~~l~~~l~~~~~l~~~ 231 (467)
T PTZ00284 212 PKY-GPCLLDWIMKHGPFSHR 231 (467)
T ss_pred ecc-CCCHHHHHHHcCCCCHH
Confidence 988 67999999887777764
|
|
| >cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.7e-07 Score=97.13 Aligned_cols=91 Identities=19% Similarity=0.257 Sum_probs=71.1
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC---ceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE---HEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~---~~~~lv~e~ 811 (832)
...||+|+||.||+|+. .+|+.||||++... .......+.+|++++.+++|+||+++++++..... ...++|+||
T Consensus 10 ~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~ 89 (336)
T cd07849 10 LSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDVYIVQEL 89 (336)
T ss_pred EEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceEEEEehh
Confidence 67899999999999986 58999999998532 22334668899999999999999999998765432 237999999
Q ss_pred CCCCCHHHHHhcCCCccc
Q 003307 812 INAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w 829 (832)
+++ +|.++++.+ .++|
T Consensus 90 ~~~-~l~~~~~~~-~l~~ 105 (336)
T cd07849 90 MET-DLYKLIKTQ-HLSN 105 (336)
T ss_pred ccc-CHHHHHhcC-CCCH
Confidence 985 888877543 3443
|
Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase |
| >cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.7e-07 Score=97.33 Aligned_cols=82 Identities=18% Similarity=0.201 Sum_probs=66.1
Q ss_pred eeeccCceEEEEEECCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCCH
Q 003307 740 IGRSCHGTLYKATLDSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQSL 817 (832)
Q Consensus 740 iG~G~~g~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~GsL 817 (832)
+|.|+++.||++.. +|+.||||++... .....+.+.+|++++++++|+||+++++++...+. .+++|||+++|+|
T Consensus 10 ~~~~~~v~~~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~--~~~~~e~~~~~~l 86 (314)
T cd08216 10 FEDLMIVHLAKHKP-TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSE--LYVVSPLMAYGSC 86 (314)
T ss_pred hcCCceEEEEEecC-CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCe--EEEEEeccCCCCH
Confidence 44455555555554 7999999998543 33345679999999999999999999999987777 9999999999999
Q ss_pred HHHHhcC
Q 003307 818 AVYLQGK 824 (832)
Q Consensus 818 ~~~l~~~ 824 (832)
.++++..
T Consensus 87 ~~~l~~~ 93 (314)
T cd08216 87 EDLLKTH 93 (314)
T ss_pred HHHHHHh
Confidence 9999864
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc |
| >cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7 | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.9e-07 Score=94.27 Aligned_cols=90 Identities=20% Similarity=0.358 Sum_probs=71.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI-AKGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|+||.||+|+.. +|+.||||+++... .....++..|++++.+.. |+||++++++|..... .++||||++
T Consensus 20 ~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~--~~~v~e~~~ 97 (296)
T cd06618 20 LGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSD--VFICMELMS 97 (296)
T ss_pred eeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCe--EEEEeeccC
Confidence 678999999999999985 59999999986432 233456778888777775 9999999999988777 999999986
Q ss_pred CCCHHHHHhc-CCCccc
Q 003307 814 AQSLAVYLQG-KGLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~-~~~l~w 829 (832)
+++.+++.. .+.++|
T Consensus 98 -~~l~~l~~~~~~~l~~ 113 (296)
T cd06618 98 -TCLDKLLKRIQGPIPE 113 (296)
T ss_pred -cCHHHHHHHhcCCCCH
Confidence 477776654 334554
|
Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it |
| >cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4 | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.5e-07 Score=94.88 Aligned_cols=87 Identities=30% Similarity=0.381 Sum_probs=65.6
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC--hhhHHHHHHHHHHHhcC---CCCcceeeeeEEECCC---CceEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI--AKGKKEFAREVKKLGNI---KHPNLVSLQGYYWGPK---EHEKLV 807 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~---~H~niv~l~g~~~~~~---~~~~~l 807 (832)
...||+|+||.||+|+.. +|+.||+|.++... ......+.+|++++.++ +||||+++++++.... ....++
T Consensus 5 ~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~~~l 84 (288)
T cd07863 5 VAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRETKVTL 84 (288)
T ss_pred eeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCceEEE
Confidence 457999999999999974 79999999885432 11234466777776655 7999999999886432 123799
Q ss_pred EEecCCCCCHHHHHhcC
Q 003307 808 ISNYINAQSLAVYLQGK 824 (832)
Q Consensus 808 v~e~~~~GsL~~~l~~~ 824 (832)
||||++ |+|.++++..
T Consensus 85 v~e~~~-~~l~~~~~~~ 100 (288)
T cd07863 85 VFEHVD-QDLRTYLDKV 100 (288)
T ss_pred EEcccc-cCHHHHHHhc
Confidence 999998 5899988764
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou |
| >KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2e-08 Score=109.37 Aligned_cols=92 Identities=24% Similarity=0.329 Sum_probs=78.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
-..+|.|.||.|||++. ..|+..|||.++-......+-...|+-+++..+|||||.++|.|...+. .++.||||.+|
T Consensus 20 lqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dk--lwicMEycggg 97 (829)
T KOG0576|consen 20 LQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDK--LWICMEYCGGG 97 (829)
T ss_pred eeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhcC--cEEEEEecCCC
Confidence 35799999999999997 5899999999865444344556789999999999999999999988887 99999999999
Q ss_pred CHHHHHhcCCCcccc
Q 003307 816 SLAVYLQGKGLVLWF 830 (832)
Q Consensus 816 sL~~~l~~~~~l~w~ 830 (832)
+|++.-|..+.+++.
T Consensus 98 slQdiy~~Tgplsel 112 (829)
T KOG0576|consen 98 SLQDIYHVTGPLSEL 112 (829)
T ss_pred cccceeeecccchhH
Confidence 999998887776653
|
|
| >cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.1e-07 Score=91.38 Aligned_cols=89 Identities=15% Similarity=0.178 Sum_probs=61.7
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChh--h-------HHH-----------------HHHHHHHHhcCCCCcc
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAK--G-------KKE-----------------FAREVKKLGNIKHPNL 790 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~--~-------~~~-----------------f~~e~~~l~~~~H~ni 790 (832)
...||+|+||.||+|..++|+.||||+++..... . ... ...|++.+.++.|+++
T Consensus 2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v 81 (190)
T cd05147 2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI 81 (190)
T ss_pred CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3579999999999999888999999998543210 0 011 2349999999988877
Q ss_pred eeeeeEEECCCCceEEEEEecCCCCCHHHHHhcCCCccc
Q 003307 791 VSLQGYYWGPKEHEKLVISNYINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 791 v~l~g~~~~~~~~~~~lv~e~~~~GsL~~~l~~~~~l~w 829 (832)
.....+.. .. .++||||++++++.......+.+++
T Consensus 82 ~~p~~~~~--~~--~~iVmE~i~g~~l~~~~~~~~~~~~ 116 (190)
T cd05147 82 PCPEPILL--KS--HVLVMEFIGDDGWAAPRLKDAPLSE 116 (190)
T ss_pred CCCcEEEe--cC--CEEEEEEeCCCCCcchhhhcCCCCH
Confidence 54433322 23 4899999999887655433444544
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c |
| >KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.1e-08 Score=114.72 Aligned_cols=89 Identities=31% Similarity=0.453 Sum_probs=75.6
Q ss_pred ccCeeeeccCceEEEEEE-CCCCEEEEEEec--cCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 736 PAEVIGRSCHGTLYKATL-DSGSILAVKRLR--EGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 736 ~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~--~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.++.||.|.||+||-|+. .+|...|||-++ ...........+|+.++..++|||+|+.+|.-...+. .+|.||||
T Consensus 1239 rg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRek--v~IFMEyC 1316 (1509)
T KOG4645|consen 1239 RGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREK--VYIFMEYC 1316 (1509)
T ss_pred cccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHH--HHHHHHHh
Confidence 378899999999999995 689999999774 2223334567899999999999999999999887777 99999999
Q ss_pred CCCCHHHHHhcCCC
Q 003307 813 NAQSLAVYLQGKGL 826 (832)
Q Consensus 813 ~~GsL~~~l~~~~~ 826 (832)
++|+|.+.+...+.
T Consensus 1317 ~~GsLa~ll~~gri 1330 (1509)
T KOG4645|consen 1317 EGGSLASLLEHGRI 1330 (1509)
T ss_pred ccCcHHHHHHhcch
Confidence 99999999876554
|
|
| >cd00180 PKc Catalytic domain of Protein Kinases | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.4e-06 Score=86.97 Aligned_cols=83 Identities=27% Similarity=0.438 Sum_probs=72.2
Q ss_pred eeeccCceEEEEEEC-CCCEEEEEEeccCChh-hHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCCH
Q 003307 740 IGRSCHGTLYKATLD-SGSILAVKRLREGIAK-GKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQSL 817 (832)
Q Consensus 740 iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~GsL 817 (832)
||+|++|.||+++.. +|+.++||+....... ..+.+.+|++.+.+++|++++++++++..... .++++||+++++|
T Consensus 1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~--~~~~~e~~~~~~l 78 (215)
T cd00180 1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENH--LYLVMEYCEGGSL 78 (215)
T ss_pred CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCe--EEEEEecCCCCcH
Confidence 689999999999985 5899999998654332 34679999999999999999999999987766 9999999999999
Q ss_pred HHHHhcC
Q 003307 818 AVYLQGK 824 (832)
Q Consensus 818 ~~~l~~~ 824 (832)
.+++...
T Consensus 79 ~~~~~~~ 85 (215)
T cd00180 79 KDLLKEN 85 (215)
T ss_pred HHHHHhc
Confidence 9999765
|
Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which |
| >cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.1e-07 Score=97.80 Aligned_cols=86 Identities=20% Similarity=0.282 Sum_probs=68.2
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC----ceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE----HEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~----~~~~lv~ 809 (832)
...||+|+||.||+|+. .++..||||++.... ....+.+.+|++++.+++||||+++++++..... ...++++
T Consensus 20 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~ 99 (343)
T cd07878 20 LTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIENFNEVYLVT 99 (343)
T ss_pred heecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccccCcEEEEe
Confidence 56899999999999986 578999999986432 2234567899999999999999999988754321 1378999
Q ss_pred ecCCCCCHHHHHhc
Q 003307 810 NYINAQSLAVYLQG 823 (832)
Q Consensus 810 e~~~~GsL~~~l~~ 823 (832)
||+ +++|.+++..
T Consensus 100 ~~~-~~~l~~~~~~ 112 (343)
T cd07878 100 NLM-GADLNNIVKC 112 (343)
T ss_pred ecC-CCCHHHHHhc
Confidence 998 6799888754
|
Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is |
| >cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase | Back alignment and domain information |
|---|
Probab=98.40 E-value=9e-07 Score=94.12 Aligned_cols=86 Identities=21% Similarity=0.309 Sum_probs=68.6
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCC---ceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI--AKGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKE---HEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~---~~~~lv~ 809 (832)
.+.||+|+||.||+|+.. +|+.||||+++... ......+.+|++++++++ ||||+++++++...+. ...++||
T Consensus 6 ~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~~lv~ 85 (295)
T cd07837 6 LEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPSLYLVF 85 (295)
T ss_pred eeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCceEEEEe
Confidence 568999999999999974 79999999875432 222456889999999995 6999999998865432 1269999
Q ss_pred ecCCCCCHHHHHhc
Q 003307 810 NYINAQSLAVYLQG 823 (832)
Q Consensus 810 e~~~~GsL~~~l~~ 823 (832)
||+++ +|.+++..
T Consensus 86 e~~~~-~l~~~~~~ 98 (295)
T cd07837 86 EYLDS-DLKKFMDS 98 (295)
T ss_pred eccCc-CHHHHHHH
Confidence 99995 89998864
|
Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm |
| >KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription] | Back alignment and domain information |
|---|
Probab=98.40 E-value=8e-08 Score=95.54 Aligned_cols=85 Identities=25% Similarity=0.354 Sum_probs=67.6
Q ss_pred cCeeeeccCceEEEEEEC---C--CCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEEC-CCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD---S--GSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWG-PKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~---~--g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~-~~~~~~~lv 808 (832)
...||+|.||.||||+-. + .+.+|+|+++... .+-...-++|+..++.++|||+|.|...+.+ ... ++++
T Consensus 29 ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~--v~l~ 106 (438)
T KOG0666|consen 29 IGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKK--VWLL 106 (438)
T ss_pred cceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCce--EEEE
Confidence 356999999999999742 2 2379999996442 2234567899999999999999999988876 344 8999
Q ss_pred EecCCCCCHHHHHhcC
Q 003307 809 SNYINAQSLAVYLQGK 824 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~ 824 (832)
|||.+. +|...||-.
T Consensus 107 fdYAEh-DL~~II~fH 121 (438)
T KOG0666|consen 107 FDYAEH-DLWHIIKFH 121 (438)
T ss_pred ehhhhh-hHHHHHHHh
Confidence 999997 899988743
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.5e-09 Score=115.12 Aligned_cols=178 Identities=24% Similarity=0.220 Sum_probs=116.4
Q ss_pred ccccCCCCCCEEEcCCCCCcccCCCCCC-CCCCCEEECCCCCCC---ccCcccccC------CCCCCEEEcccccccccC
Q 003307 84 PTIIGLKMLCNVSVSNNQLMGNITDIGS-IQSLEFLDLSHNLFH---GLIPSGIVS------LKNLMLLNISSNSFEGTF 153 (832)
Q Consensus 84 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-l~~L~~L~Ls~N~l~---~~~p~~~~~------l~~L~~L~Ls~N~l~~~~ 153 (832)
-.|..+..|++|.|.++.+.... .+.. -..|++|.-. |.+. .++....+. --.|.+.+.++|.+. ..
T Consensus 103 i~ifpF~sLr~LElrg~~L~~~~-GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~m 179 (1096)
T KOG1859|consen 103 ISIFPFRSLRVLELRGCDLSTAK-GLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LM 179 (1096)
T ss_pred ceeccccceeeEEecCcchhhhh-hhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hH
Confidence 35677778888888877775411 1111 1223333222 2221 111111111 124777888888888 56
Q ss_pred CCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCC
Q 003307 154 PSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDG 233 (832)
Q Consensus 154 p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 233 (832)
..++.-++.|+.|||++|+++.. +.+..|+.|++|||++|.+.-..-..... -.|+.|++++|.++.. .+
T Consensus 180 D~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~g----c~L~~L~lrnN~l~tL----~g 249 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVG----CKLQLLNLRNNALTTL----RG 249 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhh----hhheeeeecccHHHhh----hh
Confidence 67788888999999999998743 37888999999999999987322222222 2488899999987532 12
Q ss_pred CCCCCCcCEEEccCCcccccCC--CccccccccEEEccccCCC
Q 003307 234 MPYFDNLEVFDASNNHLVGAIP--SFNFVFSLRILRLGSNQLS 274 (832)
Q Consensus 234 ~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~L~~N~l~ 274 (832)
+.++++|+.||+++|-|.+.-. .+..+..|+.|+|.+|.+-
T Consensus 250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 6788889999999998876443 5666778888999999885
|
|
| >cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.8e-07 Score=93.88 Aligned_cols=90 Identities=22% Similarity=0.376 Sum_probs=74.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh--hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA--KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|++|.||+|... +|+.+|+|+++.... .....+..|++++++++|+||+++++++...+. .++|+||++
T Consensus 4 ~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~--~~~v~e~~~ 81 (283)
T cd05118 4 LGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGD--LYLVFEFMD 81 (283)
T ss_pred ceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCC--EEEEEeccC
Confidence 356999999999999974 789999999864322 245678899999999999999999999988777 999999998
Q ss_pred CCCHHHHHhcC-CCccc
Q 003307 814 AQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~~-~~l~w 829 (832)
+ +|.+++..+ ..++|
T Consensus 82 ~-~l~~~l~~~~~~~~~ 97 (283)
T cd05118 82 T-DLYKLIKDRQRGLPE 97 (283)
T ss_pred C-CHHHHHHhhcccCCH
Confidence 5 898888764 34554
|
Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They |
| >cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1 | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-06 Score=96.27 Aligned_cols=85 Identities=20% Similarity=0.284 Sum_probs=67.7
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC----ceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE----HEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~----~~~~lv~ 809 (832)
...||+|+||.||+|+.. .++.||||++... .....+.+.+|+.+++.++||||+++++++...+. ...++||
T Consensus 29 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~~~~~lv~ 108 (364)
T cd07875 29 LKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVM 108 (364)
T ss_pred EEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeecccccccccCeEEEEE
Confidence 568999999999999964 7899999998543 22334678899999999999999999998764321 1379999
Q ss_pred ecCCCCCHHHHHh
Q 003307 810 NYINAQSLAVYLQ 822 (832)
Q Consensus 810 e~~~~GsL~~~l~ 822 (832)
||+++ +|.+++.
T Consensus 109 e~~~~-~l~~~~~ 120 (364)
T cd07875 109 ELMDA-NLCQVIQ 120 (364)
T ss_pred eCCCC-CHHHHHH
Confidence 99985 6777664
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >PHA03209 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=9.3e-07 Score=96.81 Aligned_cols=85 Identities=15% Similarity=0.181 Sum_probs=69.7
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+.. ++..||+|..... ....|+.++.+++|||||++++++...+. .++|+||+. |
T Consensus 71 ~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~------~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~-~ 141 (357)
T PHA03209 71 IKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG------TTLIEAMLLQNVNHPSVIRMKDTLVSGAI--TCMVLPHYS-S 141 (357)
T ss_pred EEEecCCCCeEEEEEEECCCCceEEEEeCCcc------ccHHHHHHHHhCCCCCCcChhheEEeCCe--eEEEEEccC-C
Confidence 567999999999999975 6789999975432 23568999999999999999999988776 899999996 6
Q ss_pred CHHHHHhcC-CCcccc
Q 003307 816 SLAVYLQGK-GLVLWF 830 (832)
Q Consensus 816 sL~~~l~~~-~~l~w~ 830 (832)
+|.+++... +.++|.
T Consensus 142 ~l~~~l~~~~~~~~~~ 157 (357)
T PHA03209 142 DLYTYLTKRSRPLPID 157 (357)
T ss_pred cHHHHHHhccCCCCHH
Confidence 899988653 456653
|
|
| >cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.4e-06 Score=94.93 Aligned_cols=91 Identities=19% Similarity=0.269 Sum_probs=70.1
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC----ceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE----HEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~----~~~~lv~ 809 (832)
...||+|+||.||+|.. .+|+.||||+++.. .....+.+.+|++++.+++||||+++++++..... ...++++
T Consensus 22 ~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~ 101 (345)
T cd07877 22 LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVT 101 (345)
T ss_pred EEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeeecccccccccEEEEe
Confidence 56799999999999986 58999999998643 22234568899999999999999999998864321 1267888
Q ss_pred ecCCCCCHHHHHhcCCCccc
Q 003307 810 NYINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~~l~w 829 (832)
|++ +|+|.+++..+ .++|
T Consensus 102 ~~~-~~~L~~~~~~~-~l~~ 119 (345)
T cd07877 102 HLM-GADLNNIVKCQ-KLTD 119 (345)
T ss_pred hhc-ccCHHHHHhcC-CCCH
Confidence 876 68999887654 3554
|
Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14 |
| >cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.5e-06 Score=95.18 Aligned_cols=87 Identities=20% Similarity=0.281 Sum_probs=69.2
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC----ceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE----HEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~----~~~~lv~ 809 (832)
...||+|+||.||+|.. .+|+.||||++... .....+.+.+|++++.+++|+||+++++++..... ...++||
T Consensus 21 ~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~ 100 (353)
T cd07850 21 LKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEFQDVYLVM 100 (353)
T ss_pred EEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCccccCcEEEEE
Confidence 56799999999999997 48999999998532 22334567889999999999999999998864321 1279999
Q ss_pred ecCCCCCHHHHHhcC
Q 003307 810 NYINAQSLAVYLQGK 824 (832)
Q Consensus 810 e~~~~GsL~~~l~~~ 824 (832)
||++ |+|.+.++..
T Consensus 101 e~~~-~~l~~~~~~~ 114 (353)
T cd07850 101 ELMD-ANLCQVIQMD 114 (353)
T ss_pred eccC-CCHHHHHhhc
Confidence 9997 5888877643
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK |
| >smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.1e-06 Score=90.17 Aligned_cols=84 Identities=24% Similarity=0.415 Sum_probs=71.5
Q ss_pred cCceEEEEEEC-CCCEEEEEEeccCChhh-HHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCCHHHHH
Q 003307 744 CHGTLYKATLD-SGSILAVKRLREGIAKG-KKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQSLAVYL 821 (832)
Q Consensus 744 ~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~-~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~GsL~~~l 821 (832)
+||.||+|+.. +|+.+|+|++....... .+.|.+|++.+++++|+|++++++++..... .++++||+++|+|.+++
T Consensus 1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~--~~l~~e~~~~~~L~~~~ 78 (244)
T smart00220 1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDK--LYLVMEYCDGGDLFDLL 78 (244)
T ss_pred CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCE--EEEEEeCCCCCCHHHHH
Confidence 58999999985 68999999986544333 6789999999999999999999999987766 99999999999999999
Q ss_pred hcCCCccc
Q 003307 822 QGKGLVLW 829 (832)
Q Consensus 822 ~~~~~l~w 829 (832)
.....+++
T Consensus 79 ~~~~~~~~ 86 (244)
T smart00220 79 KKRGRLSE 86 (244)
T ss_pred HhccCCCH
Confidence 87654443
|
Phosphotransferases. Serine or threonine-specific kinase subfamily. |
| >KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.4e-07 Score=96.07 Aligned_cols=91 Identities=23% Similarity=0.311 Sum_probs=70.9
Q ss_pred CeeeeccCceEEEEEE-CCCCEEEEEEec--c-CChh----hHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 738 EVIGRSCHGTLYKATL-DSGSILAVKRLR--E-GIAK----GKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~--~-~~~~----~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
+++|+|||+.||||.. ...+.||||+-. + +... ..+--++|.++-..+.||.||+++.|+.-... ..+-|.
T Consensus 469 hLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtd-sFCTVL 547 (775)
T KOG1151|consen 469 HLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTD-SFCTVL 547 (775)
T ss_pred HHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccc-cceeee
Confidence 4689999999999984 567889999752 2 2111 12335789999999999999999999864432 378899
Q ss_pred ecCCCCCHHHHHhcCCCccc
Q 003307 810 NYINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~~l~w 829 (832)
|||++.+|+-+|...+.+++
T Consensus 548 EYceGNDLDFYLKQhklmSE 567 (775)
T KOG1151|consen 548 EYCEGNDLDFYLKQHKLMSE 567 (775)
T ss_pred eecCCCchhHHHHhhhhhhH
Confidence 99999999999987765554
|
|
| >KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.4e-07 Score=89.54 Aligned_cols=87 Identities=18% Similarity=0.275 Sum_probs=75.0
Q ss_pred cCeeeeccCceEEEEE-ECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCC---CceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK---EHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~---~~~~~lv~e~~ 812 (832)
...+|+|||..||.++ +.++..+|+|++.-...++.+...+|++.-++++|||+++++.++..+. .++.||+++|.
T Consensus 26 ~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~yll~Pyy 105 (302)
T KOG2345|consen 26 QRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAYLLLPYY 105 (302)
T ss_pred eeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEEEEeehh
Confidence 5679999999999998 5789999999997666667788999999999999999999999875332 23599999999
Q ss_pred CCCCHHHHHhc
Q 003307 813 NAQSLAVYLQG 823 (832)
Q Consensus 813 ~~GsL~~~l~~ 823 (832)
..|||.+.+..
T Consensus 106 ~~Gsl~d~i~~ 116 (302)
T KOG2345|consen 106 KRGSLLDEIER 116 (302)
T ss_pred ccccHHHHHHH
Confidence 99999999864
|
|
| >cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3 | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.2e-06 Score=95.87 Aligned_cols=86 Identities=21% Similarity=0.262 Sum_probs=67.8
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC----ceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE----HEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~----~~~~lv~ 809 (832)
...||+|+||.||+|.. ..++.||||++... .....+.+.+|+.+++.++||||+++++++..... ...++||
T Consensus 22 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~ 101 (355)
T cd07874 22 LKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEFQDVYLVM 101 (355)
T ss_pred EEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccccccceeEEEh
Confidence 56799999999999986 47899999998643 22334678899999999999999999998864321 1379999
Q ss_pred ecCCCCCHHHHHhc
Q 003307 810 NYINAQSLAVYLQG 823 (832)
Q Consensus 810 e~~~~GsL~~~l~~ 823 (832)
||+++ ++.++++.
T Consensus 102 e~~~~-~l~~~~~~ 114 (355)
T cd07874 102 ELMDA-NLCQVIQM 114 (355)
T ss_pred hhhcc-cHHHHHhh
Confidence 99985 67666643
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok |
| >cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.2e-06 Score=89.97 Aligned_cols=81 Identities=15% Similarity=0.088 Sum_probs=66.2
Q ss_pred ccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCCHHHHH
Q 003307 743 SCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQSLAVYL 821 (832)
Q Consensus 743 G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~GsL~~~l 821 (832)
|.||.||+++. .+|+.+|+|++.... ++..|...+....|||++++++++...+. .++|+||+++|+|.+++
T Consensus 4 g~~~~v~~~~~~~~~~~~~~K~i~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~lv~e~~~~~~L~~~l 76 (237)
T cd05576 4 GVIDKVLLVMDTRTQQTFILKGLRKSS-----EYSRERLTIIPHCVPNMVCLHKYIVSEDS--VFLVLQHAEGGKLWSHI 76 (237)
T ss_pred cccceEEEEEEccCCcEEEEEeecchh-----hhhhHHHHHHhcCCCceeehhhheecCCe--EEEEEecCCCCCHHHHH
Confidence 78999999997 489999999986432 33455556666779999999999987776 99999999999999999
Q ss_pred hcCCCcccc
Q 003307 822 QGKGLVLWF 830 (832)
Q Consensus 822 ~~~~~l~w~ 830 (832)
.....++|.
T Consensus 77 ~~~~~l~~~ 85 (237)
T cd05576 77 SKFLNIPEE 85 (237)
T ss_pred HHhcCCCHH
Confidence 876666653
|
Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha |
| >PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.9e-07 Score=64.02 Aligned_cols=42 Identities=48% Similarity=1.017 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhhcCCCCCCcccccCccccCCCCCCCCCCCCccccC
Q 003307 18 QSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITCT 63 (832)
Q Consensus 18 ~~~~~~l~~~k~~~~~~~~~~~l~~w~~~~~~~~~c~~~w~gv~C~ 63 (832)
++|++||++||+++..+|.+ ++.+|+... +.++| +|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~-~l~~W~~~~-~~~~C--~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSG-VLSSWNPSS-DSDPC--SWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-C-CCTT--TT---S-CC--CSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCc-ccccCCCcC-CCCCe--eeccEEeC
Confidence 67999999999999656655 599998642 24666 99999995
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A. |
| >cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.5e-06 Score=90.20 Aligned_cols=93 Identities=28% Similarity=0.356 Sum_probs=70.0
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC--hhhHHHHHHHHHHHhcC---CCCcceeeeeEEECCCC---ceEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI--AKGKKEFAREVKKLGNI---KHPNLVSLQGYYWGPKE---HEKLV 807 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~---~H~niv~l~g~~~~~~~---~~~~l 807 (832)
.+.||+|+||.||+|+.. +|+.||||+++... ......+.+|++++.++ +|+|++++++++...+. ...++
T Consensus 4 ~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~l 83 (287)
T cd07838 4 LAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELKLTL 83 (287)
T ss_pred EEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCceeEE
Confidence 467999999999999985 68999999985322 22234567788776655 69999999999976542 13789
Q ss_pred EEecCCCCCHHHHHhcCC--Ccccc
Q 003307 808 ISNYINAQSLAVYLQGKG--LVLWF 830 (832)
Q Consensus 808 v~e~~~~GsL~~~l~~~~--~l~w~ 830 (832)
+|||++ ++|.++++... .++|.
T Consensus 84 ~~e~~~-~~l~~~l~~~~~~~l~~~ 107 (287)
T cd07838 84 VFEHVD-QDLATYLSKCPKPGLPPE 107 (287)
T ss_pred Eehhcc-cCHHHHHHHccCCCCCHH
Confidence 999998 48999887643 35553
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both |
| >PRK14879 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.8e-06 Score=86.81 Aligned_cols=83 Identities=14% Similarity=0.278 Sum_probs=66.9
Q ss_pred CeeeeccCceEEEEEECCCCEEEEEEeccCCh--------hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIA--------KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~--------~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
..||+|++|.||+|+. +|..++||+...... .....+.+|++++..++|++++....++...+. .++||
T Consensus 2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~--~~lv~ 78 (211)
T PRK14879 2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPEN--FIIVM 78 (211)
T ss_pred cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCC--CEEEE
Confidence 3689999999999997 678899997643211 113458899999999999999888777766665 89999
Q ss_pred ecCCCCCHHHHHhc
Q 003307 810 NYINAQSLAVYLQG 823 (832)
Q Consensus 810 e~~~~GsL~~~l~~ 823 (832)
||+++++|.+++..
T Consensus 79 e~~~G~~L~~~~~~ 92 (211)
T PRK14879 79 EYIEGEPLKDLINS 92 (211)
T ss_pred EEeCCcCHHHHHHh
Confidence 99999999998864
|
|
| >cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1 | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.8e-06 Score=92.16 Aligned_cols=93 Identities=16% Similarity=0.133 Sum_probs=71.4
Q ss_pred cCeeeeccCceEEEEEEC-C--CCEEEEEEeccC--ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECC--CCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-S--GSILAVKRLREG--IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGP--KEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~--g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~--~~~~~~lv 808 (832)
...||+|+||.||+++.. . +..||||++... .....+.+.+|++++.++ .||||+++++++... .....+++
T Consensus 5 ~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~ 84 (332)
T cd07857 5 IKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNELYLY 84 (332)
T ss_pred EEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCcEEEE
Confidence 457999999999999974 4 789999998542 222345688999999999 599999999876432 11237888
Q ss_pred EecCCCCCHHHHHhcCCCcccc
Q 003307 809 SNYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~~l~w~ 830 (832)
+||++ ++|.+++...+.++|.
T Consensus 85 ~e~~~-~~L~~~l~~~~~~~~~ 105 (332)
T cd07857 85 EELME-ADLHQIIRSGQPLTDA 105 (332)
T ss_pred Eeccc-CCHHHHHhcCCCCCHH
Confidence 99987 6999999877766654
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co |
| >cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.3e-06 Score=93.70 Aligned_cols=92 Identities=23% Similarity=0.298 Sum_probs=70.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC------ceEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE------HEKLV 807 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~------~~~~l 807 (832)
...||+|+||.||+|+.. +|+.+|||++.... ......+.+|++++.+++|+||+++++++..... ...++
T Consensus 13 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~l 92 (311)
T cd07866 13 LGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRKRGSVYM 92 (311)
T ss_pred EEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheecccccccccCceEEE
Confidence 667999999999999974 78999999884322 1223457889999999999999999998765432 13699
Q ss_pred EEecCCCCCHHHHHhcC-CCccc
Q 003307 808 ISNYINAQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 808 v~e~~~~GsL~~~l~~~-~~l~w 829 (832)
|+||++. ++.+.++.. ..++|
T Consensus 93 v~~~~~~-~l~~~~~~~~~~~~~ 114 (311)
T cd07866 93 VTPYMDH-DLSGLLENPSVKLTE 114 (311)
T ss_pred EEecCCc-CHHHHHhccccCCCH
Confidence 9999985 787777653 34554
|
Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic |
| >TIGR03724 arch_bud32 Kae1-associated kinase Bud32 | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.6e-06 Score=86.35 Aligned_cols=83 Identities=14% Similarity=0.243 Sum_probs=64.2
Q ss_pred eeeeccCceEEEEEECCCCEEEEEEeccCC--------hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 739 VIGRSCHGTLYKATLDSGSILAVKRLREGI--------AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~--------~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
+||+|+||.||+|.+ +|..|+||+..... ....+.+.+|++++.+++|+++.....++...+. .++|||
T Consensus 1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~--~~lv~e 77 (199)
T TIGR03724 1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDN--KTIVME 77 (199)
T ss_pred CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC--CEEEEE
Confidence 489999999999996 67889999864321 1113567899999999999887666666655555 799999
Q ss_pred cCCCCCHHHHHhcC
Q 003307 811 YINAQSLAVYLQGK 824 (832)
Q Consensus 811 ~~~~GsL~~~l~~~ 824 (832)
|+++++|.+++...
T Consensus 78 ~~~g~~l~~~~~~~ 91 (199)
T TIGR03724 78 YIEGKPLKDVIEEG 91 (199)
T ss_pred EECCccHHHHHhhc
Confidence 99999999887653
|
Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine. |
| >KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.1e-06 Score=94.66 Aligned_cols=85 Identities=21% Similarity=0.360 Sum_probs=71.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCC-C-----CcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIK-H-----PNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~-H-----~niv~l~g~~~~~~~~~~~lv~ 809 (832)
.++||+|.||+|-||.. .+++.||||+++..... ..+-..|+.+|..++ | -|+|+++.|+...++ .+||+
T Consensus 191 ~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~f-~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~H--lciVf 267 (586)
T KOG0667|consen 191 LEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKRF-LRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNH--LCIVF 267 (586)
T ss_pred EEEecccccceeEEEEecCCCcEEEEEeeccChHH-HHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccc--eeeee
Confidence 57899999999999986 58999999999754332 344577999998886 4 389999999998888 99999
Q ss_pred ecCCCCCHHHHHhcCC
Q 003307 810 NYINAQSLAVYLQGKG 825 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~ 825 (832)
|.+.. +|+++|+..+
T Consensus 268 ELL~~-NLYellK~n~ 282 (586)
T KOG0667|consen 268 ELLST-NLYELLKNNK 282 (586)
T ss_pred hhhhh-hHHHHHHhcC
Confidence 99986 9999998765
|
|
| >cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.9e-06 Score=92.37 Aligned_cols=84 Identities=19% Similarity=0.310 Sum_probs=66.9
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC----ceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE----HEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~----~~~~lv~ 809 (832)
...||+|+||.||+|+. .+|+.||||++... .......+.+|++++++++||||+++++++..... ...++|+
T Consensus 20 ~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~ 99 (342)
T cd07879 20 LKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQDFYLVM 99 (342)
T ss_pred EEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCceEEEEe
Confidence 57899999999999996 47999999998542 12224568899999999999999999999865432 1368999
Q ss_pred ecCCCCCHHHHH
Q 003307 810 NYINAQSLAVYL 821 (832)
Q Consensus 810 e~~~~GsL~~~l 821 (832)
||++. +|.+++
T Consensus 100 e~~~~-~l~~~~ 110 (342)
T cd07879 100 PYMQT-DLQKIM 110 (342)
T ss_pred ccccc-CHHHHH
Confidence 99975 777764
|
Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13 |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.6e-07 Score=91.42 Aligned_cols=86 Identities=27% Similarity=0.289 Sum_probs=43.8
Q ss_pred CCCCCEEECCCCCCCcc--CcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCc-cchhhhcCCCCC
Q 003307 112 IQSLEFLDLSHNLFHGL--IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGD-IMHLLSQLGSVV 188 (832)
Q Consensus 112 l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~ 188 (832)
++.++.|||.+|.|+.. +-.-+.+|+.|++|+|+.|++...+-..-..+.+|++|-|.+..+.-. ....+..++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 45555566666655532 222334566666666666666533322113445666666666555422 223345556666
Q ss_pred EEECccCcC
Q 003307 189 HVDLSNNQF 197 (832)
Q Consensus 189 ~L~Ls~N~l 197 (832)
+|++|.|.+
T Consensus 150 elHmS~N~~ 158 (418)
T KOG2982|consen 150 ELHMSDNSL 158 (418)
T ss_pred hhhhccchh
Confidence 666666533
|
|
| >KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.6e-07 Score=104.35 Aligned_cols=65 Identities=26% Similarity=0.395 Sum_probs=53.4
Q ss_pred CeeeeccCceEEEEEEC-CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC
Q 003307 738 EVIGRSCHGTLYKATLD-SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE 802 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~ 802 (832)
.++|+||||.|||++.+ ||+.+|||++.-.. ...-....+|++++++++|||+|+.+..+.....
T Consensus 485 ~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~ 551 (1351)
T KOG1035|consen 485 ELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVESTA 551 (1351)
T ss_pred HHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCC
Confidence 46999999999999976 99999999996432 2234567889999999999999999987765443
|
|
| >cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.3e-06 Score=93.18 Aligned_cols=91 Identities=18% Similarity=0.260 Sum_probs=70.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC----ceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE----HEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~----~~~~lv~ 809 (832)
...||+|+||.||+|+.. ++..||||++... .....+.+.+|++++++++|+|++++.+++...+. ...++|+
T Consensus 20 ~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~ 99 (343)
T cd07851 20 LSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDFQDVYLVT 99 (343)
T ss_pred EEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccccccEEEEE
Confidence 567999999999999974 7899999988542 22234567889999999999999999987754332 1379999
Q ss_pred ecCCCCCHHHHHhcCCCccc
Q 003307 810 NYINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~~l~w 829 (832)
||+ +++|.+++... .++|
T Consensus 100 e~~-~~~L~~~~~~~-~l~~ 117 (343)
T cd07851 100 HLM-GADLNNIVKCQ-KLSD 117 (343)
T ss_pred ecC-CCCHHHHHhcC-CCCH
Confidence 999 56999988753 4554
|
Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.4e-07 Score=91.70 Aligned_cols=84 Identities=20% Similarity=0.273 Sum_probs=44.3
Q ss_pred CCCCCEeeCcCCCCCC--ccchhhhcCCCCCEEECccCcCccccCCCCCCC-CCCCCccEEECCCCCCeeccCCCCCCCC
Q 003307 160 LGKLKYLDLRANRFGG--DIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDS-SFISSIQYLNISENSLVGELFPHDGMPY 236 (832)
Q Consensus 160 l~~L~~L~L~~N~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 236 (832)
.+.++.|||.+|.|+. .+...+.+++.|+.|+|+.|++...|. .+ ..+.+|+.|-|.+..+.-..... .+..
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~----~lp~p~~nl~~lVLNgT~L~w~~~~s-~l~~ 144 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK----SLPLPLKNLRVLVLNGTGLSWTQSTS-SLDD 144 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc----cCcccccceEEEEEcCCCCChhhhhh-hhhc
Confidence 4556666777776652 344456677777777777777663322 12 12356666666665553221111 1334
Q ss_pred CCCcCEEEccCC
Q 003307 237 FDNLEVFDASNN 248 (832)
Q Consensus 237 l~~L~~L~Ls~N 248 (832)
++.++.|+++.|
T Consensus 145 lP~vtelHmS~N 156 (418)
T KOG2982|consen 145 LPKVTELHMSDN 156 (418)
T ss_pred chhhhhhhhccc
Confidence 455555555554
|
|
| >KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.6e-07 Score=88.40 Aligned_cols=90 Identities=27% Similarity=0.394 Sum_probs=71.9
Q ss_pred ccchhhhcccccCeeeeccCceEEEEEE-CCCCEEEEEEeccCCh-hhHHHHHHHHHHHh-cCCCCcceeeeeEEECCCC
Q 003307 726 MFTAEELSHAPAEVIGRSCHGTLYKATL-DSGSILAVKRLREGIA-KGKKEFAREVKKLG-NIKHPNLVSLQGYYWGPKE 802 (832)
Q Consensus 726 ~~~~~~l~~~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~f~~e~~~l~-~~~H~niv~l~g~~~~~~~ 802 (832)
.|+.++|.. -..||.|+||+|+|-.. +.|+..|||+++.... ...+++..|.++.. .-+.||||+++|.+..++.
T Consensus 60 ~F~~~~Lqd--lg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGd 137 (361)
T KOG1006|consen 60 TFTSDNLQD--LGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGD 137 (361)
T ss_pred ccccchHHH--HHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCc
Confidence 466666665 46799999999999987 5899999999975433 45677888888754 4479999999999987777
Q ss_pred ceEEEEEecCCCCCHHHH
Q 003307 803 HEKLVISNYINAQSLAVY 820 (832)
Q Consensus 803 ~~~~lv~e~~~~GsL~~~ 820 (832)
.++-||.|.- ||+.+
T Consensus 138 --cWiCMELMd~-SlDkl 152 (361)
T KOG1006|consen 138 --CWICMELMDI-SLDKL 152 (361)
T ss_pred --eeeeHHHHhh-hHHHH
Confidence 9999999984 66543
|
|
| >KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.7e-06 Score=90.65 Aligned_cols=91 Identities=12% Similarity=0.126 Sum_probs=72.7
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChh------h--HHHHHHHHHHHhcCC---CCcceeeeeEEECCCCce
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAK------G--KKEFAREVKKLGNIK---HPNLVSLQGYYWGPKEHE 804 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~------~--~~~f~~e~~~l~~~~---H~niv~l~g~~~~~~~~~ 804 (832)
-..+|+|+||+|+.|.++ +...|+||.+.+.+.- + ....-.||.+|..++ |+||+|++.++.+.+.
T Consensus 566 lq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEddd~-- 643 (772)
T KOG1152|consen 566 LQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFEDDDY-- 643 (772)
T ss_pred eeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeecCCe--
Confidence 457999999999999985 6678999988543211 1 123557999999997 9999999999998888
Q ss_pred EEEEEecC-CCCCHHHHHhcCCCccc
Q 003307 805 KLVISNYI-NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 805 ~~lv~e~~-~~GsL~~~l~~~~~l~w 829 (832)
.||++|-- ++-+|+++|..+..+++
T Consensus 644 yyl~te~hg~gIDLFd~IE~kp~m~E 669 (772)
T KOG1152|consen 644 YYLETEVHGEGIDLFDFIEFKPRMDE 669 (772)
T ss_pred eEEEecCCCCCcchhhhhhccCccch
Confidence 99999965 45599999998887765
|
|
| >cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.5e-06 Score=81.61 Aligned_cols=79 Identities=14% Similarity=0.181 Sum_probs=58.5
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChh--------------------------hHHHHHHHHHHHhcCCCCcc
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAK--------------------------GKKEFAREVKKLGNIKHPNL 790 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~--------------------------~~~~f~~e~~~l~~~~H~ni 790 (832)
...||+|+||+||+|+..+|+.||||+++..... ....+..|.+.+.+++|+++
T Consensus 2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i 81 (190)
T cd05145 2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV 81 (190)
T ss_pred CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3579999999999999878999999998643110 01224678999999999998
Q ss_pred eeeeeEEECCCCceEEEEEecCCCCCHHH
Q 003307 791 VSLQGYYWGPKEHEKLVISNYINAQSLAV 819 (832)
Q Consensus 791 v~l~g~~~~~~~~~~~lv~e~~~~GsL~~ 819 (832)
.....+... . .++||||++++++..
T Consensus 82 ~~p~~~~~~--~--~~lVmE~~~g~~~~~ 106 (190)
T cd05145 82 PVPEPILLK--K--NVLVMEFIGDDGSPA 106 (190)
T ss_pred CCceEEEec--C--CEEEEEEecCCCchh
Confidence 655544432 3 589999999886543
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.5e-08 Score=98.48 Aligned_cols=212 Identities=14% Similarity=0.088 Sum_probs=116.1
Q ss_pred CCCccccCCCcEEEEEeCCCCCccccCcccccCCC--CCCEEEcCCCCCccc-CCCCCCC--CCCCEEECCCCCCCcc-C
Q 003307 56 NWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLK--MLCNVSVSNNQLMGN-ITDIGSI--QSLEFLDLSHNLFHGL-I 129 (832)
Q Consensus 56 ~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~--~L~~L~Ls~n~l~~~-~~~~~~l--~~L~~L~Ls~N~l~~~-~ 129 (832)
.|.++.-+...++.+|+.+.++. |..++.+. .+..+.+..-.+... ..+...+ +.|++||||...|+-. .
T Consensus 127 Rfyr~~~de~lW~~lDl~~r~i~----p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl 202 (419)
T KOG2120|consen 127 RFYRLASDESLWQTLDLTGRNIH----PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTL 202 (419)
T ss_pred HHhhccccccceeeeccCCCccC----hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHH
Confidence 46666555667889999887765 23333332 233444443222211 1111112 3488888888777632 2
Q ss_pred cccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCC-CCCcc-chhhhcCCCCCEEECccCcCccccC-CCCC
Q 003307 130 PSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANR-FGGDI-MHLLSQLGSVVHVDLSNNQFSGSLD-LGLG 206 (832)
Q Consensus 130 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~ 206 (832)
..-+..+.+|+.|.|.++++...+-..++...+|+.|+|+.+. |+..- .-.+.+++.|.+|+|+.+.++...- ..+.
T Consensus 203 ~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~ 282 (419)
T KOG2120|consen 203 HGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA 282 (419)
T ss_pred HHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHh
Confidence 2345667788888888888887777777778888888887664 33211 1235677788888888777653221 0011
Q ss_pred CCCCCCCccEEECCCCCCeeccCC-CCCCCCCCCcCEEEccCCccccc--CCCccccccccEEEccccCC
Q 003307 207 DSSFISSIQYLNISENSLVGELFP-HDGMPYFDNLEVFDASNNHLVGA--IPSFNFVFSLRILRLGSNQL 273 (832)
Q Consensus 207 ~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~L~~N~l 273 (832)
.. -++|+.|+|++..=.-.... ......+++|..|||++|..-.. +..|..++.|++|.++.|..
T Consensus 283 hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 283 HI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred hh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC
Confidence 11 15667777766531100000 00023566677777776543211 11455566666666666653
|
|
| >KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.8e-07 Score=89.85 Aligned_cols=92 Identities=23% Similarity=0.290 Sum_probs=75.8
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHH---HHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKE---FAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~---f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
-.++|+|.||+|-.++- .+|+.+|+|++++.-.-...+ -..|-++|...+||-+..|...+...+. .+.||||.
T Consensus 173 LKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~dr--lCFVMeya 250 (516)
T KOG0690|consen 173 LKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDR--LCFVMEYA 250 (516)
T ss_pred HHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCce--EEEEEEEc
Confidence 46799999999999986 489999999997653322222 4568899999999999999888877776 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
.+|.|+-+|.+.+.+++.
T Consensus 251 nGGeLf~HLsrer~FsE~ 268 (516)
T KOG0690|consen 251 NGGELFFHLSRERVFSED 268 (516)
T ss_pred cCceEeeehhhhhcccch
Confidence 999999999887766653
|
|
| >KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.2e-06 Score=85.13 Aligned_cols=89 Identities=20% Similarity=0.234 Sum_probs=70.8
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCC--ceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKE--HEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~--~~~~lv~e~~ 812 (832)
..+||-|-.|+|-.++.+ +|+.+|+|++.+.. .-.+|++.--+. .|||||.++..|.+.-. ...++|||+|
T Consensus 67 ~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds~-----KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcLLiVmE~m 141 (400)
T KOG0604|consen 67 WQVLGAGINGKVVQCVHKRTQEKFALKVLLDSP-----KARREVELHWMASGHPHIVSIIDVYENSYQGRKCLLIVMECM 141 (400)
T ss_pred hhhhccccCCceEEEEeccchhhhHHHHHhcCH-----HHHhHhhhhhhhcCCCceEEeehhhhhhccCceeeEeeeecc
Confidence 578999999999999974 89999999986543 346788775544 79999999998865322 1488999999
Q ss_pred CCCCHHHHHhcCCC--cccc
Q 003307 813 NAQSLAVYLQGKGL--VLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~--l~w~ 830 (832)
+||+|+..++.++. ++++
T Consensus 142 eGGeLfsriq~~g~~afTEr 161 (400)
T KOG0604|consen 142 EGGELFSRIQDRGDQAFTER 161 (400)
T ss_pred cchHHHHHHHHcccccchHH
Confidence 99999999987764 6654
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.3e-08 Score=108.57 Aligned_cols=127 Identities=29% Similarity=0.297 Sum_probs=68.3
Q ss_pred CCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcC
Q 003307 91 MLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRA 170 (832)
Q Consensus 91 ~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 170 (832)
.|...+.++|.+.-.-.++.-++.|+.|||++|+++... .+..|++|++|||++|.++...--...++. |+.|.|++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 355556666665533334555666666666666666442 566666666666666666632222233333 66666666
Q ss_pred CCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCC
Q 003307 171 NRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSL 224 (832)
Q Consensus 171 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l 224 (832)
|.++. -..+.+|.+|+.||+++|-|.+.- .+..+..|..|+.|+|.+|.+
T Consensus 242 N~l~t--L~gie~LksL~~LDlsyNll~~hs--eL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALTT--LRGIENLKSLYGLDLSYNLLSEHS--ELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHHh--hhhHHhhhhhhccchhHhhhhcch--hhhHHHHHHHHHHHhhcCCcc
Confidence 66642 223556666666666666665321 111122234555555555544
|
|
| >PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.2e-05 Score=92.91 Aligned_cols=83 Identities=18% Similarity=0.258 Sum_probs=64.1
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEe-ccC-C------hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRL-REG-I------AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l-~~~-~------~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv 808 (832)
.+.||+|+||.||+|.+.+. .+++|+. ... . ....+.+.+|++++.+++|++++....++...+. .++|
T Consensus 338 ~~~iG~G~~g~Vy~~~~~~~-~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~--~~lv 414 (535)
T PRK09605 338 DHLIGKGAEADIKKGEYLGR-DAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEE--KTIV 414 (535)
T ss_pred cceeccCCcEEEEEEeecCc-cceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCC--CEEE
Confidence 67899999999999998543 3444432 111 1 1123568899999999999999998888877666 7899
Q ss_pred EecCCCCCHHHHHh
Q 003307 809 SNYINAQSLAVYLQ 822 (832)
Q Consensus 809 ~e~~~~GsL~~~l~ 822 (832)
|||+++++|.++++
T Consensus 415 ~E~~~g~~L~~~l~ 428 (535)
T PRK09605 415 MEYIGGKDLKDVLE 428 (535)
T ss_pred EEecCCCcHHHHHH
Confidence 99999999999874
|
|
| >PRK10359 lipopolysaccharide core biosynthesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.3e-06 Score=81.32 Aligned_cols=84 Identities=12% Similarity=0.182 Sum_probs=64.9
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhH---------HHHHHHHHHHhcCCCCcceeeeeEEECCCC-----
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGK---------KEFAREVKKLGNIKHPNLVSLQGYYWGPKE----- 802 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~---------~~f~~e~~~l~~~~H~niv~l~g~~~~~~~----- 802 (832)
.+++|.|+||.||.... ++..+|||.++....... ..|.+|+..+.+++|++|..+..++.....
T Consensus 36 ~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~~~~~~~~ 114 (232)
T PRK10359 36 IKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLAERKTLRY 114 (232)
T ss_pred EEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeecccccccc
Confidence 56899999999999765 577899999964322111 226899999999999999999888654321
Q ss_pred -ceEEEEEecCCCCCHHHHH
Q 003307 803 -HEKLVISNYINAQSLAVYL 821 (832)
Q Consensus 803 -~~~~lv~e~~~~GsL~~~l 821 (832)
...+|||||++|.+|.++.
T Consensus 115 ~~~~~lvmEyi~G~tL~~~~ 134 (232)
T PRK10359 115 AHTYIMLIEYIEGVELNDMP 134 (232)
T ss_pred cCCeEEEEEEECCccHHHhh
Confidence 1278999999999998763
|
|
| >PHA03210 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.3e-06 Score=94.32 Aligned_cols=84 Identities=12% Similarity=0.275 Sum_probs=62.0
Q ss_pred cCeeeeccCceEEEEEEC--CCCEEEEEEec-----------------cCChhhHHHHHHHHHHHhcCCCCcceeeeeEE
Q 003307 737 AEVIGRSCHGTLYKATLD--SGSILAVKRLR-----------------EGIAKGKKEFAREVKKLGNIKHPNLVSLQGYY 797 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~--~g~~vAvK~l~-----------------~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~ 797 (832)
...||+|+||+||+|... ++...++|.+. .........|.+|++++.+++|||||++++++
T Consensus 153 i~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~ 232 (501)
T PHA03210 153 IDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENILKIEEIL 232 (501)
T ss_pred EeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCcCcEeEEE
Confidence 567999999999998763 33333333110 01112345688999999999999999999999
Q ss_pred ECCCCceEEEEEecCCCCCHHHHHhc
Q 003307 798 WGPKEHEKLVISNYINAQSLAVYLQG 823 (832)
Q Consensus 798 ~~~~~~~~~lv~e~~~~GsL~~~l~~ 823 (832)
...+. .++|+|++. ++|.+++..
T Consensus 233 ~~~~~--~~lv~e~~~-~~l~~~l~~ 255 (501)
T PHA03210 233 RSEAN--TYMITQKYD-FDLYSFMYD 255 (501)
T ss_pred EECCe--eEEEEeccc-cCHHHHHhh
Confidence 88777 899999986 578777654
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.9e-06 Score=76.98 Aligned_cols=83 Identities=22% Similarity=0.164 Sum_probs=40.4
Q ss_pred CCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCcc-chhhhcCCCCCEEEC
Q 003307 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDI-MHLLSQLGSVVHVDL 192 (832)
Q Consensus 114 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~L 192 (832)
+...+||++|.+... ..|..+++|.+|.|++|.|+.+.|.--.-+++|+.|.|.+|+|...- -.-+..++.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 444555555555433 23455555555555555555544443344455555555555554211 112344445555555
Q ss_pred ccCcCc
Q 003307 193 SNNQFS 198 (832)
Q Consensus 193 s~N~l~ 198 (832)
-+|..+
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 444443
|
|
| >KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.99 E-value=8.5e-06 Score=87.63 Aligned_cols=87 Identities=18% Similarity=0.235 Sum_probs=73.8
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEec--cCChhhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLR--EGIAKGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~--~~~~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+||.++|||+...+.+.+|+|++. ....+....|..|++.|.+++ |.+||+|+.|-...+. .|+||||=+
T Consensus 366 lk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~--lYmvmE~Gd 443 (677)
T KOG0596|consen 366 LKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGY--LYMVMECGD 443 (677)
T ss_pred HHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCce--EEEEeeccc
Confidence 45799999999999998888899999774 234445678999999999995 9999999999888777 999999766
Q ss_pred CCCHHHHHhcCCC
Q 003307 814 AQSLAVYLQGKGL 826 (832)
Q Consensus 814 ~GsL~~~l~~~~~ 826 (832)
-+|..+|..+..
T Consensus 444 -~DL~kiL~k~~~ 455 (677)
T KOG0596|consen 444 -IDLNKILKKKKS 455 (677)
T ss_pred -ccHHHHHHhccC
Confidence 499999987764
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.6e-07 Score=90.23 Aligned_cols=62 Identities=16% Similarity=0.187 Sum_probs=31.7
Q ss_pred cccEEEcCCCcCCCC----CcccccCCCCCCEEEccCCcCCCCccccc------CCCCCCCEEEccCCcccc
Q 003307 355 YVEDIHLSSNFLTGM----VPNQTSQFLRLTSFKVSNNSLEGDLPAVL------GTYPELKVIDLSLNHLNG 416 (832)
Q Consensus 355 ~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~------~~l~~L~~L~Ls~N~l~~ 416 (832)
+|+.|||.+|.++-. ....++..+.|+.|.+.+|-++......+ -..|+|..|-+.+|...+
T Consensus 215 ~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 215 SLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred cceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 567777777766532 22333444556666666666653322211 123455555555555443
|
|
| >KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.5e-06 Score=89.34 Aligned_cols=91 Identities=20% Similarity=0.255 Sum_probs=75.6
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
-.+||+|+||.||-++. .+|+.+|.|++.+.. .+...--.+|-.+|.++..+-||.|-..|.+.+. ..+|+..|
T Consensus 190 ~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~--LClVLtlM 267 (591)
T KOG0986|consen 190 YRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDA--LCLVLTLM 267 (591)
T ss_pred eEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCc--eEEEEEee
Confidence 45899999999999987 489999999985432 2334456789999999999999999888888888 99999999
Q ss_pred CCCCHHHHHhcCC--Cccc
Q 003307 813 NAQSLAVYLQGKG--LVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~--~l~w 829 (832)
.||+|.-+|...+ .+++
T Consensus 268 NGGDLkfHiyn~g~~gF~e 286 (591)
T KOG0986|consen 268 NGGDLKFHIYNHGNPGFDE 286 (591)
T ss_pred cCCceeEEeeccCCCCCch
Confidence 9999999887655 4554
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.89 E-value=3.4e-06 Score=82.65 Aligned_cols=67 Identities=27% Similarity=0.182 Sum_probs=35.3
Q ss_pred CCCCCcCEEEccCCcccccCC-----CccccccccEEEccccCCCCCCChhhhh----hCCCCCCEEECCCCCCCC
Q 003307 235 PYFDNLEVFDASNNHLVGAIP-----SFNFVFSLRILRLGSNQLSGSLPVALLQ----ESSMMLSELDLSLNQLEG 301 (832)
Q Consensus 235 ~~l~~L~~L~Ls~N~l~~~~~-----~~~~l~~L~~L~L~~N~l~~~~p~~~~~----~~~~~L~~L~L~~N~l~~ 301 (832)
..+.+|+.||+..|-++-.-. .+...+.|+.|.+..|-++..-..+++. ...++|..|...+|.+.+
T Consensus 211 ~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 211 FYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred HHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 345666677777666653211 3344455677777777666443333221 233455555555555543
|
|
| >KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.7e-06 Score=83.13 Aligned_cols=86 Identities=26% Similarity=0.387 Sum_probs=71.9
Q ss_pred CeeeeccCceEEEEEECCCCEEEEEEec--cCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 738 EVIGRSCHGTLYKATLDSGSILAVKRLR--EGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~--~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
..|.+...|..|||++. |..+++|++. +......++|..|...++-..||||.+.+|.|..+.. ..++..|||.|
T Consensus 196 tkl~e~hsgelwrgrwq-gndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppn--lv~isq~mp~g 272 (448)
T KOG0195|consen 196 TKLAESHSGELWRGRWQ-GNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPN--LVIISQYMPFG 272 (448)
T ss_pred hhhccCCCccccccccc-CcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCC--ceEeeeeccch
Confidence 34778888999999995 5566677764 2333345789999999999999999999999999888 99999999999
Q ss_pred CHHHHHhcCCC
Q 003307 816 SLAVYLQGKGL 826 (832)
Q Consensus 816 sL~~~l~~~~~ 826 (832)
||+..||+...
T Consensus 273 slynvlhe~t~ 283 (448)
T KOG0195|consen 273 SLYNVLHEQTS 283 (448)
T ss_pred HHHHHHhcCcc
Confidence 99999998753
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=8.6e-07 Score=77.87 Aligned_cols=83 Identities=23% Similarity=0.221 Sum_probs=37.2
Q ss_pred CCCCCEEEcCCCCCcccCCCC-CCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEee
Q 003307 89 LKMLCNVSVSNNQLMGNITDI-GSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLD 167 (832)
Q Consensus 89 l~~L~~L~Ls~n~l~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 167 (832)
..+|+..+|++|.+...++.| ..++.++.|+|++|.|+ .+|..+..++.|+.|+++.|.|. ..|..+..|.+|-.||
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 344444455555544443322 22334444445554444 22334444444444444444444 3344444444444444
Q ss_pred CcCCCC
Q 003307 168 LRANRF 173 (832)
Q Consensus 168 L~~N~l 173 (832)
..+|.+
T Consensus 130 s~~na~ 135 (177)
T KOG4579|consen 130 SPENAR 135 (177)
T ss_pred CCCCcc
Confidence 444444
|
|
| >KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.6e-05 Score=86.62 Aligned_cols=90 Identities=18% Similarity=0.213 Sum_probs=74.0
Q ss_pred CeeeeccCceEEEEEE-CCCCEEEEEEeccCCh---hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 738 EVIGRSCHGTLYKATL-DSGSILAVKRLREGIA---KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
..||-|+||.|..+.- ++...+|+|.+++... ....-..+|-.+|.....+-||+|+..+.+.+. .|.||||+|
T Consensus 635 k~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdn--LYFVMdYIP 712 (1034)
T KOG0608|consen 635 KTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDN--LYFVMDYIP 712 (1034)
T ss_pred eeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCc--eEEEEeccC
Confidence 4599999999999874 5678899999865422 223346789999999999999999999988887 999999999
Q ss_pred CCCHHHHHhcCCCccc
Q 003307 814 AQSLAVYLQGKGLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w 829 (832)
||++-.+|.+.+-|.+
T Consensus 713 GGDmMSLLIrmgIFeE 728 (1034)
T KOG0608|consen 713 GGDMMSLLIRMGIFEE 728 (1034)
T ss_pred CccHHHHHHHhccCHH
Confidence 9999999987765543
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=1.3e-06 Score=76.76 Aligned_cols=106 Identities=21% Similarity=0.218 Sum_probs=83.8
Q ss_pred CCCEEEcCCCCCcccC--C-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEee
Q 003307 91 MLCNVSVSNNQLMGNI--T-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLD 167 (832)
Q Consensus 91 ~L~~L~Ls~n~l~~~~--~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 167 (832)
.+..+||+++++.-.. + .+.....|+..+|++|.+....+..-...+-++.|+|++|.|+ .+|..++.++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 3456777777665322 1 4667788888999999998654444445568999999999999 6788899999999999
Q ss_pred CcCCCCCCccchhhhcCCCCCEEECccCcCc
Q 003307 168 LRANRFGGDIMHLLSQLGSVVHVDLSNNQFS 198 (832)
Q Consensus 168 L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 198 (832)
++.|.+. ..|..+..|.+|-.|+..+|.+.
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 9999997 56677777999999999999876
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.1e-05 Score=72.28 Aligned_cols=80 Identities=20% Similarity=0.159 Sum_probs=60.0
Q ss_pred CCEEECCCCCCCccCccccc-CCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECc
Q 003307 115 LEFLDLSHNLFHGLIPSGIV-SLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLS 193 (832)
Q Consensus 115 L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls 193 (832)
=+.++|.+.++..+.- ++ -+.+...+||++|.+... ..|..++.|.+|.|++|+|+.+.|..-.-+++|..|.|.
T Consensus 21 e~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccchhh--ccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 4556666666542211 22 245788999999999843 568889999999999999998888777777888888888
Q ss_pred cCcCc
Q 003307 194 NNQFS 198 (832)
Q Consensus 194 ~N~l~ 198 (832)
+|.|.
T Consensus 97 nNsi~ 101 (233)
T KOG1644|consen 97 NNSIQ 101 (233)
T ss_pred Ccchh
Confidence 88876
|
|
| >cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.8e-05 Score=76.24 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=58.8
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCCh----------------------hhHHHHHHHHHHHhcCCCCc--cee
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIA----------------------KGKKEFAREVKKLGNIKHPN--LVS 792 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~----------------------~~~~~f~~e~~~l~~~~H~n--iv~ 792 (832)
.+.||+|+||.||+|..++|+.||||+++.... .....+..|...+.++.|++ +.+
T Consensus 20 ~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~v~~ 99 (198)
T cd05144 20 GNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGFPVPK 99 (198)
T ss_pred CCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCCCCCc
Confidence 678999999999999988899999998643210 01123678899999998874 444
Q ss_pred eeeEEECCCCceEEEEEecCCCCCHHHHH
Q 003307 793 LQGYYWGPKEHEKLVISNYINAQSLAVYL 821 (832)
Q Consensus 793 l~g~~~~~~~~~~~lv~e~~~~GsL~~~l 821 (832)
.++. .. .++||||+++++|.+..
T Consensus 100 ~~~~----~~--~~lv~e~~~g~~L~~~~ 122 (198)
T cd05144 100 PIDW----NR--HAVVMEYIDGVELYRVR 122 (198)
T ss_pred eeec----CC--ceEEEEEeCCcchhhcc
Confidence 4432 23 68999999999987654
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.78 E-value=1.9e-05 Score=56.30 Aligned_cols=36 Identities=44% Similarity=0.599 Sum_probs=17.8
Q ss_pred CCCEEECCCCCCCccCcccccCCCCCCEEEccccccc
Q 003307 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFE 150 (832)
Q Consensus 114 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 150 (832)
+|++|+|++|+|+.+ |..+++|++|++|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCC
Confidence 455555555555532 334555555555555555554
|
... |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.72 E-value=8.1e-06 Score=84.39 Aligned_cols=92 Identities=21% Similarity=0.246 Sum_probs=71.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh-h--hHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA-K--GKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~-~--~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
-.+||+|+||+|..|+-+ +.+.+|||++++.-. + +.+--+.|-++|.-. +-|-+|+|..++.+.+. .|.||||
T Consensus 354 l~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDR--LyFVMEy 431 (683)
T KOG0696|consen 354 LMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDR--LYFVMEY 431 (683)
T ss_pred EEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhh--eeeEEEE
Confidence 568999999999999875 668899999965421 1 122234566666655 67899999999988887 9999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
+.+|+|--+++.-+.+.++
T Consensus 432 vnGGDLMyhiQQ~GkFKEp 450 (683)
T KOG0696|consen 432 VNGGDLMYHIQQVGKFKEP 450 (683)
T ss_pred ecCchhhhHHHHhcccCCc
Confidence 9999999999877766553
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.72 E-value=9e-07 Score=87.74 Aligned_cols=57 Identities=16% Similarity=0.118 Sum_probs=24.9
Q ss_pred CccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccc
Q 003307 213 SIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGS 270 (832)
Q Consensus 213 ~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~ 270 (832)
.|++|||+.-.|+..... ..+..+.+|+.|.+.++++...+- .+..-.+|+.|+|+.
T Consensus 186 Rlq~lDLS~s~it~stl~-~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLH-GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM 243 (419)
T ss_pred hhHHhhcchhheeHHHHH-HHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence 355555555444321110 012334455555555555544333 444444555555544
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.9e-05 Score=54.76 Aligned_cols=36 Identities=36% Similarity=0.642 Sum_probs=17.3
Q ss_pred CCCEEEccCCcCCCCcccccCCCCCCCEEEccCCccc
Q 003307 379 RLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLN 415 (832)
Q Consensus 379 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 415 (832)
+|++|++++|+|+ .+|..+++|++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3455555555555 33444555555555555555554
|
... |
| >KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.69 E-value=1.1e-06 Score=85.11 Aligned_cols=86 Identities=23% Similarity=0.295 Sum_probs=67.0
Q ss_pred CeeeeccCceEEEEEEC-CCCEEEEEEec--cCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC------ceEEEE
Q 003307 738 EVIGRSCHGTLYKATLD-SGSILAVKRLR--EGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE------HEKLVI 808 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~--~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~------~~~~lv 808 (832)
..||+|.||.||+|+.. +|+.||+|+.- ....+-...-.+|+++|..++|+|++.++..|.+... ...|+|
T Consensus 23 ~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r~t~ylV 102 (376)
T KOG0669|consen 23 AKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDRATFYLV 102 (376)
T ss_pred HhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccccceeeee
Confidence 56999999999999974 78889999762 2222234456899999999999999999998865321 138999
Q ss_pred EecCCCCCHHHHHhcC
Q 003307 809 SNYINAQSLAVYLQGK 824 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~ 824 (832)
++||+. +|+.+|...
T Consensus 103 f~~ceh-DLaGlLsn~ 117 (376)
T KOG0669|consen 103 FDFCEH-DLAGLLSNR 117 (376)
T ss_pred HHHhhh-hHHHHhcCc
Confidence 999997 888887654
|
|
| >TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase | Back alignment and domain information |
|---|
Probab=97.68 E-value=5.6e-05 Score=84.22 Aligned_cols=84 Identities=24% Similarity=0.384 Sum_probs=56.8
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhh----------------------------------------HHHHH
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKG----------------------------------------KKEFA 776 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~----------------------------------------~~~f~ 776 (832)
.+.||.|++|+||+|++++|+.||||+.+...... +-+|.
T Consensus 122 ~~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~ 201 (437)
T TIGR01982 122 EKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLR 201 (437)
T ss_pred CcceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHH
Confidence 46799999999999999999999999985432110 01255
Q ss_pred HHHHHHhcC----CCCcceeeeeEEEC-CCCceEEEEEecCCCCCHHHHHh
Q 003307 777 REVKKLGNI----KHPNLVSLQGYYWG-PKEHEKLVISNYINAQSLAVYLQ 822 (832)
Q Consensus 777 ~e~~~l~~~----~H~niv~l~g~~~~-~~~~~~~lv~e~~~~GsL~~~l~ 822 (832)
+|.+.+.++ +|.+-|..-..|+. ... .+|||||+++++|.++..
T Consensus 202 ~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~--~vLvmE~i~G~~L~~~~~ 250 (437)
T TIGR01982 202 REAANASELGENFKNDPGVYVPEVYWDRTSE--RVLTMEWIDGIPLSDIAA 250 (437)
T ss_pred HHHHHHHHHHHhcCCCCCEEeCCEehhhcCC--ceEEEEeECCcccccHHH
Confidence 566555554 23333333333332 233 799999999999988765
|
This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species. |
| >KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=97.67 E-value=1.8e-05 Score=75.69 Aligned_cols=80 Identities=23% Similarity=0.370 Sum_probs=67.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.+|+|.|+.|+.|.. .+.+.++||.++.-. .+...+|+++|..++ ||||++|+....++......||+||+.|
T Consensus 43 vrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVk---kkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLiFE~v~n 119 (338)
T KOG0668|consen 43 VRKVGRGKYSEVFEGINITNNEKCVIKILKPVK---KKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLIFEYVNN 119 (338)
T ss_pred HHHHcCccHhhHhcccccCCCceEEEeeechHH---HHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhHhhhhcc
Confidence 45699999999999984 578899999996532 467899999999997 9999999999887765558899999999
Q ss_pred CCHHH
Q 003307 815 QSLAV 819 (832)
Q Consensus 815 GsL~~ 819 (832)
-+...
T Consensus 120 ~Dfk~ 124 (338)
T KOG0668|consen 120 TDFKQ 124 (338)
T ss_pred ccHHH
Confidence 77544
|
|
| >PLN03225 Serine/threonine-protein kinase SNT7; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=8.7e-05 Score=85.71 Aligned_cols=82 Identities=20% Similarity=0.192 Sum_probs=53.1
Q ss_pred cCeeeeccCceEEEEEEC-C----CCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeE------EECCCCceE
Q 003307 737 AEVIGRSCHGTLYKATLD-S----GSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGY------YWGPKEHEK 805 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~----g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~------~~~~~~~~~ 805 (832)
.+.||+|+||.||+|++. + +..||||++..... .+.+..| .+.+..|.+++.++.. +.... +.
T Consensus 137 ~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~--~e~~~~e--~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 210 (566)
T PLN03225 137 GKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGA--VEIWMNE--RVRRACPNSCADFVYGFLEPVSSKKED--EY 210 (566)
T ss_pred eEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccch--hHHHHHH--HHHhhchhhHHHHHHhhhcccccccCC--ce
Confidence 678999999999999974 5 78999999854321 1112221 1222233333322211 12233 38
Q ss_pred EEEEecCCCCCHHHHHhcC
Q 003307 806 LVISNYINAQSLAVYLQGK 824 (832)
Q Consensus 806 ~lv~e~~~~GsL~~~l~~~ 824 (832)
++||||+++|+|.++++.+
T Consensus 211 ~LV~ey~~~gsL~~~l~~~ 229 (566)
T PLN03225 211 WLVWRYEGESTLADLMQSK 229 (566)
T ss_pred EEEEEecCCCcHHHHHHhc
Confidence 9999999999999999764
|
|
| >smart00090 RIO RIO-like kinase | Back alignment and domain information |
|---|
Probab=97.64 E-value=8.8e-05 Score=75.56 Aligned_cols=79 Identities=18% Similarity=0.247 Sum_probs=57.5
Q ss_pred cCeeeeccCceEEEEE--ECCCCEEEEEEeccCChh------------------------hHHHHHHHHHHHhcCCCCc-
Q 003307 737 AEVIGRSCHGTLYKAT--LDSGSILAVKRLREGIAK------------------------GKKEFAREVKKLGNIKHPN- 789 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~--~~~g~~vAvK~l~~~~~~------------------------~~~~f~~e~~~l~~~~H~n- 789 (832)
...||+|+||.||+|+ ..+|+.||||.++..... ....+..|++.+.++.|..
T Consensus 33 ~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~~~~i 112 (237)
T smart00090 33 GGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLYEAGV 112 (237)
T ss_pred CCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6789999999999998 468999999988532110 1123678999999997643
Q ss_pred -ceeeeeEEECCCCceEEEEEecCCCCCHHHHH
Q 003307 790 -LVSLQGYYWGPKEHEKLVISNYINAQSLAVYL 821 (832)
Q Consensus 790 -iv~l~g~~~~~~~~~~~lv~e~~~~GsL~~~l 821 (832)
+.+.+++ .. .++||||+++++|..+.
T Consensus 113 ~~p~~~~~----~~--~~lV~E~~~g~~L~~~~ 139 (237)
T smart00090 113 PVPKPIAW----RR--NVLVMEFIGGDGLPAPR 139 (237)
T ss_pred CCCeeeEe----cC--ceEEEEEecCCcccccc
Confidence 3344432 23 58999999998887654
|
|
| >KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.60 E-value=1.9e-05 Score=79.37 Aligned_cols=92 Identities=18% Similarity=0.254 Sum_probs=71.2
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCCh---hhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIA---KGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
-.+||+|+|++|..+++ ++.+.+|+|++++... .+..-...|-.+.... +||-+|.|..++.+... .+.|.||
T Consensus 255 l~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesr--lffviey 332 (593)
T KOG0695|consen 255 LRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESR--LFFVIEY 332 (593)
T ss_pred eeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccce--EEEEEEE
Confidence 56899999999999997 4789999999864321 1222234455555444 79999999999987776 9999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
+++|+|--+.++++.+++.
T Consensus 333 v~ggdlmfhmqrqrklpee 351 (593)
T KOG0695|consen 333 VNGGDLMFHMQRQRKLPEE 351 (593)
T ss_pred ecCcceeeehhhhhcCcHH
Confidence 9999998888888777653
|
|
| >KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.58 E-value=5.2e-05 Score=74.63 Aligned_cols=98 Identities=19% Similarity=0.349 Sum_probs=72.3
Q ss_pred chhhhcccccCeeeeccCceEEEEEE-CCCCEEEEEEecc-CChhhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCce
Q 003307 728 TAEELSHAPAEVIGRSCHGTLYKATL-DSGSILAVKRLRE-GIAKGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHE 804 (832)
Q Consensus 728 ~~~~l~~~~~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~-~~~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~ 804 (832)
+..||.. -..+|.|..|+|+|++. .+|..+|||.+.+ +.....+.....++++.+.+ .|.||+.+||+.....
T Consensus 90 dindl~~--l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~d-- 165 (391)
T KOG0983|consen 90 DINDLEN--LGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTD-- 165 (391)
T ss_pred ChHHhhh--HHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCch--
Confidence 3444443 34689999999999997 4799999999864 34455566778888887775 8999999999998776
Q ss_pred EEEEEecCCCCCHHHHHhc-CCCcccc
Q 003307 805 KLVISNYINAQSLAVYLQG-KGLVLWF 830 (832)
Q Consensus 805 ~~lv~e~~~~GsL~~~l~~-~~~l~w~ 830 (832)
.++-||.|.- .++.+|.+ +++++++
T Consensus 166 V~IcMelMs~-C~ekLlkrik~piPE~ 191 (391)
T KOG0983|consen 166 VFICMELMST-CAEKLLKRIKGPIPER 191 (391)
T ss_pred HHHHHHHHHH-HHHHHHHHhcCCchHH
Confidence 8999999863 45555543 3344443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00027 Score=75.91 Aligned_cols=131 Identities=18% Similarity=0.261 Sum_probs=86.3
Q ss_pred CcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCC-cccccCcccccCCCCCCeEe
Q 003307 354 NYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLN-HLNGFLLPSFFTSTKLTDLN 432 (832)
Q Consensus 354 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 432 (832)
.+++.|++++|.++.. |. --.+|+.|.++++.--..+|..+. ++|+.|++++| .+.. +| ..|+.|+
T Consensus 52 ~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~s-LP------~sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISG-LP------ESVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccc-cc------cccceEE
Confidence 5799999999988854 52 224699999988433236666552 58999999998 5543 33 3578888
Q ss_pred ccCCccc--ccCCcccccCCCCCcccCcccccEEEccCCc-Ccc-cCChhhhcC-CCCCEEeCcCCcCcccCCCCccCCC
Q 003307 433 LSGNNFS--GPLPLQEIQNNPSTGSTQNLSLTSLDLAYNS-LSG-RLLPGISKF-HNLVYLNLSNNKFEGSIPDGLPNGL 507 (832)
Q Consensus 433 Ls~N~l~--~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~~-~~p~~l~~l-~~L~~L~Ls~N~l~g~ip~~~~~~L 507 (832)
+++|... +.+|. +|+.|.+.+++ ... .+|. .+ ++|+.|++++|... .+|..++.+|
T Consensus 119 L~~n~~~~L~~LPs---------------sLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~LP~SL 179 (426)
T PRK15386 119 IKGSATDSIKNVPN---------------GLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEKLPESL 179 (426)
T ss_pred eCCCCCcccccCcc---------------hHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCcccccccC
Confidence 8877653 22332 37777775433 111 1111 12 47889999888765 4666777889
Q ss_pred cEEEcCCCc
Q 003307 508 KEFNVSFNN 516 (832)
Q Consensus 508 ~~l~ls~N~ 516 (832)
+.|+++.|.
T Consensus 180 k~L~ls~n~ 188 (426)
T PRK15386 180 QSITLHIEQ 188 (426)
T ss_pred cEEEecccc
Confidence 999988764
|
|
| >cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00021 Score=67.07 Aligned_cols=76 Identities=11% Similarity=0.052 Sum_probs=62.6
Q ss_pred CeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCC--CcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKH--PNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H--~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
..||+|.++.||++...+ ..++||....... ...+.+|++.+..++| ..++++++++...+. .++++||++++
T Consensus 4 ~~i~~g~~~~v~~~~~~~-~~~~iK~~~~~~~--~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~--~~~v~e~~~g~ 78 (155)
T cd05120 4 KLLKGGLTNRVYLLGTKD-EDYVLKINPSREK--GADREREVAILQLLARKGLPVPKVLASGESDGW--SYLLMEWIEGE 78 (155)
T ss_pred eecccccccceEEEEecC-CeEEEEecCCCCc--hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCc--cEEEEEecCCe
Confidence 568999999999999854 7899998855432 4678999999999977 488899888876655 89999999998
Q ss_pred CHH
Q 003307 816 SLA 818 (832)
Q Consensus 816 sL~ 818 (832)
.+.
T Consensus 79 ~~~ 81 (155)
T cd05120 79 TLD 81 (155)
T ss_pred ecc
Confidence 775
|
The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves |
| >KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0001 Score=83.39 Aligned_cols=81 Identities=22% Similarity=0.315 Sum_probs=62.7
Q ss_pred cCeeeeccCc-eEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHG-TLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g-~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+++|.|+-| .||+|.+ .|+.||||++-... ..-..+||..|..- +|||||+.+|.-.++.+ .||..|.|.-
T Consensus 514 ~eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~e~---~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF--~YIalELC~~ 587 (903)
T KOG1027|consen 514 KEILGYGSNGTVVFRGVY-EGREVAVKRLLEEF---FDFAQREIQLLQESDEHPNVIRYYCSEQDRQF--LYIALELCAC 587 (903)
T ss_pred HHHcccCCCCcEEEEEee-CCceehHHHHhhHh---HHHHHHHHHHHHhccCCCceEEEEeeccCCce--EEEEehHhhh
Confidence 6678988876 5799999 58999999984321 22346899998877 69999998655444444 9999999985
Q ss_pred CCHHHHHhcC
Q 003307 815 QSLAVYLQGK 824 (832)
Q Consensus 815 GsL~~~l~~~ 824 (832)
+|.|++..+
T Consensus 588 -sL~dlie~~ 596 (903)
T KOG1027|consen 588 -SLQDLIESS 596 (903)
T ss_pred -hHHHHHhcc
Confidence 999999874
|
|
| >KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00057 Score=70.83 Aligned_cols=85 Identities=19% Similarity=0.241 Sum_probs=66.6
Q ss_pred cCeeeeccCceEEEEEEC------CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
..++-+|.||.||+|.+. +.+.|-||.++.. +.-...-|..|--.+..+.|||+.+..|.|..... ..+.+|
T Consensus 289 ~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V~ie~~~-~P~V~y 367 (563)
T KOG1024|consen 289 SCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGVSIEDYA-TPFVLY 367 (563)
T ss_pred hhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEEEeeccC-cceEEE
Confidence 456789999999999663 3345667766543 22234568889999999999999999999976433 489999
Q ss_pred ecCCCCCHHHHHh
Q 003307 810 NYINAQSLAVYLQ 822 (832)
Q Consensus 810 e~~~~GsL~~~l~ 822 (832)
.++.-|+|..+|.
T Consensus 368 ~~~~~gNLK~FL~ 380 (563)
T KOG1024|consen 368 PATGVGNLKSFLQ 380 (563)
T ss_pred eccCcchHHHHHH
Confidence 9999999999997
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00069 Score=72.80 Aligned_cols=55 Identities=11% Similarity=0.053 Sum_probs=26.8
Q ss_pred CCCCcCEEEccCCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCC
Q 003307 236 YFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLN 297 (832)
Q Consensus 236 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N 297 (832)
.+.+++.|++++|.++.. |. ...+|+.|.++++.--..+|..+ ..+|+.|++++|
T Consensus 50 ~~~~l~~L~Is~c~L~sL-P~--LP~sLtsL~Lsnc~nLtsLP~~L----P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIESL-PV--LPNELTEITIENCNNLTTLPGSI----PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCccc-CC--CCCCCcEEEccCCCCcccCCchh----hhhhhheEccCc
Confidence 345666667766655532 31 12346666666532222444333 134555555544
|
|
| >PRK12274 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00091 Score=65.48 Aligned_cols=78 Identities=12% Similarity=0.071 Sum_probs=59.9
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCCh----hhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIA----KGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~----~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
...+++|+||+||.+.- ++..++.+.+..... -...-|.+|+++|.++. |+++++++++ .. .+++|||
T Consensus 7 ~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~--~~lvmey 79 (218)
T PRK12274 7 NEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DG--RHLDRSY 79 (218)
T ss_pred ceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cC--EEEEEee
Confidence 56899999999996665 677888777754322 11235889999999995 5889999886 33 7999999
Q ss_pred CCCCCHHHHH
Q 003307 812 INAQSLAVYL 821 (832)
Q Consensus 812 ~~~GsL~~~l 821 (832)
+++++|.+.+
T Consensus 80 I~G~~L~~~~ 89 (218)
T PRK12274 80 LAGAAMYQRP 89 (218)
T ss_pred ecCccHHhhh
Confidence 9999997654
|
|
| >PHA02882 putative serine/threonine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0009 Score=71.04 Aligned_cols=87 Identities=11% Similarity=0.064 Sum_probs=56.0
Q ss_pred cCeeeeccCceEEEEEEC-C---CCEEEEEEeccCChh--h---------HHHHHHHHHHHhcCCCCcceeeeeEEECCC
Q 003307 737 AEVIGRSCHGTLYKATLD-S---GSILAVKRLREGIAK--G---------KKEFAREVKKLGNIKHPNLVSLQGYYWGPK 801 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~---g~~vAvK~l~~~~~~--~---------~~~f~~e~~~l~~~~H~niv~l~g~~~~~~ 801 (832)
.++||+|+||.||+|+.. + +..+|+|........ . ......+...+..+.|+|++++++++....
T Consensus 17 ~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~ 96 (294)
T PHA02882 17 DKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGCGSFKR 96 (294)
T ss_pred eeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEeeeEec
Confidence 678999999999999974 3 456677754221110 0 112334445667789999999999876543
Q ss_pred Cc--eEEEEEecCCCCCHHHHHhcC
Q 003307 802 EH--EKLVISNYINAQSLAVYLQGK 824 (832)
Q Consensus 802 ~~--~~~lv~e~~~~GsL~~~l~~~ 824 (832)
.. ..++++|++.. ++.+.+...
T Consensus 97 ~~~~~~~~~~~~~~~-~~~~~~~~~ 120 (294)
T PHA02882 97 CRMYYRFILLEKLVE-NTKEIFKRI 120 (294)
T ss_pred CCceEEEEEEehhcc-CHHHHHHhh
Confidence 21 25678887754 566665543
|
|
| >KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0004 Score=65.84 Aligned_cols=81 Identities=23% Similarity=0.401 Sum_probs=65.6
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC-ChhhHHHHHHHHHHH-hcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG-IAKGKKEFAREVKKL-GNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l-~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.|-+-++ .+|+..|||+++.. ..+..+....|+.+. +....|.+|.++|.+..... .++.||.|.
T Consensus 51 i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regd--vwIcME~M~ 128 (282)
T KOG0984|consen 51 IEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGD--VWICMELMD 128 (282)
T ss_pred hhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhcccc--EEEeHHHhh
Confidence 45699999999988886 58999999999643 344566788888885 45589999999998887666 999999998
Q ss_pred CCCHHHH
Q 003307 814 AQSLAVY 820 (832)
Q Consensus 814 ~GsL~~~ 820 (832)
- ||..+
T Consensus 129 t-Sldkf 134 (282)
T KOG0984|consen 129 T-SLDKF 134 (282)
T ss_pred h-hHHHH
Confidence 5 77655
|
|
| >KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00029 Score=83.34 Aligned_cols=89 Identities=18% Similarity=0.262 Sum_probs=64.6
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCC---CCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIK---HPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~---H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||+||+|+..+|+.||+|+-+.... .+|.-=.+++.|++ -+-|+++...+...+. .+||+||.+
T Consensus 703 ~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~---WEfYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~--S~lv~ey~~ 777 (974)
T KOG1166|consen 703 SKEIGEGSYGSVYVATHSNGKLVALKVEKPPNP---WEFYICLQVMERLKPQMLPSIMHISSAHVFQNA--SVLVSEYSP 777 (974)
T ss_pred EeeeccccceEEEEeecCCCcEEEEEeecCCCc---eeeeehHHHHHhhchhhhcchHHHHHHHccCCc--ceeeeeccc
Confidence 567999999999999987899999998754432 23333334445555 2234444444444565 799999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
.|+|.+++...+.++|-
T Consensus 778 ~Gtlld~~N~~~~m~e~ 794 (974)
T KOG1166|consen 778 YGTLLDLINTNKVMDEY 794 (974)
T ss_pred cccHHHhhccCCCCCch
Confidence 99999999987778774
|
|
| >cd05119 RIO RIO kinase family, catalytic domain | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00069 Score=66.47 Aligned_cols=74 Identities=20% Similarity=0.318 Sum_probs=48.9
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCCh--hhHHH----------------------HHHHHHHHhcCCCCc--c
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIA--KGKKE----------------------FAREVKKLGNIKHPN--L 790 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~--~~~~~----------------------f~~e~~~l~~~~H~n--i 790 (832)
.+.||+|+||.||+|...+|+.||||+++.... ..... ...|.+.+.++.+.. +
T Consensus 2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~ 81 (187)
T cd05119 2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV 81 (187)
T ss_pred CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence 357999999999999988899999998754211 11111 135566666665443 3
Q ss_pred eeeeeEEECCCCceEEEEEecCCCCC
Q 003307 791 VSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 791 v~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
.+.+++ .. .++||||+++|.
T Consensus 82 ~~~~~~----~~--~~lv~e~~~g~~ 101 (187)
T cd05119 82 PKPIDL----NR--HVLVMEFIGGDG 101 (187)
T ss_pred CceEec----CC--CEEEEEEeCCCC
Confidence 444432 23 689999999953
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00013 Score=85.06 Aligned_cols=83 Identities=27% Similarity=0.310 Sum_probs=36.4
Q ss_pred CCCCCEEECCCCCCCcc-CcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCC-ccchhhhcCCCCCE
Q 003307 112 IQSLEFLDLSHNLFHGL-IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGG-DIMHLLSQLGSVVH 189 (832)
Q Consensus 112 l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~l~~L~~ 189 (832)
||+|+.|.+++=.+... .-.-..++++|..||+|+.+++.. ..+++|++|+.|.+.+=.+.. ..-..+.+|++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 45555555554433211 112223455555555555555432 344455555555554444332 12223344555555
Q ss_pred EECccCc
Q 003307 190 VDLSNNQ 196 (832)
Q Consensus 190 L~Ls~N~ 196 (832)
||+|...
T Consensus 225 LDIS~~~ 231 (699)
T KOG3665|consen 225 LDISRDK 231 (699)
T ss_pred eeccccc
Confidence 5554443
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00011 Score=72.55 Aligned_cols=83 Identities=30% Similarity=0.274 Sum_probs=40.6
Q ss_pred CCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCC--CCCccCcccccCCCCCCEEEcccccccccCCCC---CCCCCCC
Q 003307 89 LKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHN--LFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSG---FGGLGKL 163 (832)
Q Consensus 89 l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L 163 (832)
+..|+.|++.+..++. ...+..|++|++|++|.| ++++..+.-...+++|++|+|+.|+|.. +.. +..+.+|
T Consensus 42 ~~~le~ls~~n~gltt-~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT-LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENL 118 (260)
T ss_pred ccchhhhhhhccceee-cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcch
Confidence 3444555554444432 114555566666666666 4444333333444666666666666552 222 2334445
Q ss_pred CEeeCcCCCCC
Q 003307 164 KYLDLRANRFG 174 (832)
Q Consensus 164 ~~L~L~~N~l~ 174 (832)
..||+.+|..+
T Consensus 119 ~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 119 KSLDLFNCSVT 129 (260)
T ss_pred hhhhcccCCcc
Confidence 55555555443
|
|
| >KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.14 E-value=3.6e-05 Score=75.44 Aligned_cols=90 Identities=22% Similarity=0.306 Sum_probs=69.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCc---eEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEH---EKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~---~~~lv~e 810 (832)
+..||-|+||.||..+.+ +|+.||.|++..- .....+.+.+|++++.-.+|.|+...+........+ ++|+|.|
T Consensus 58 DRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV~TE 137 (449)
T KOG0664|consen 58 DRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYVLTE 137 (449)
T ss_pred CCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHHHHH
Confidence 678999999999999875 9999999998432 233457789999999999999999988776443221 3788999
Q ss_pred cCCCCCHHHHHhcCCCc
Q 003307 811 YINAQSLAVYLQGKGLV 827 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~~l 827 (832)
.|.. +|+..|-...++
T Consensus 138 LmQS-DLHKIIVSPQ~L 153 (449)
T KOG0664|consen 138 LMQS-DLHKIIVSPQAL 153 (449)
T ss_pred HHHh-hhhheeccCCCC
Confidence 8875 777766555444
|
|
| >KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00035 Score=73.32 Aligned_cols=83 Identities=17% Similarity=0.314 Sum_probs=69.6
Q ss_pred cCeeeeccCceEEEEEE-C---CCCEEEEEEeccCChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATL-D---SGSILAVKRLREGIAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~---~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|.|++||++++ . ..+.||+|.+..... .....+|++.|..+ -|.||+++.++....+. ..+|+||
T Consensus 41 v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~--p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~--v~ivlp~ 116 (418)
T KOG1167|consen 41 VNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSS--PSRILNELEMLYRLGGSDNIIKLNGCFRNNDQ--VAIVLPY 116 (418)
T ss_pred hccccccchhhhhhhhHhhhccccceEeeeecccccC--chHHHHHHHHHHHhccchhhhcchhhhccCCe--eEEEecc
Confidence 68899999999999986 2 567899999865432 34578999999998 49999999999988877 9999999
Q ss_pred CCCCCHHHHHhc
Q 003307 812 INAQSLAVYLQG 823 (832)
Q Consensus 812 ~~~GsL~~~l~~ 823 (832)
++.-...+++..
T Consensus 117 ~~H~~f~~l~~~ 128 (418)
T KOG1167|consen 117 FEHDRFRDLYRS 128 (418)
T ss_pred cCccCHHHHHhc
Confidence 999888777654
|
|
| >PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0011 Score=74.98 Aligned_cols=81 Identities=16% Similarity=0.288 Sum_probs=54.3
Q ss_pred CeeeeccCceEEEEEECC-CCEEEEEEeccCChh----------------------------------hH------HHHH
Q 003307 738 EVIGRSCHGTLYKATLDS-GSILAVKRLREGIAK----------------------------------GK------KEFA 776 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~~-g~~vAvK~l~~~~~~----------------------------------~~------~~f~ 776 (832)
..||+|++|+||+|++++ |+.||||+++..... .. -+|.
T Consensus 125 ~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~~ElD~~ 204 (537)
T PRK04750 125 KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLHDELDLM 204 (537)
T ss_pred hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHhhCHH
Confidence 579999999999999976 999999998643110 00 1245
Q ss_pred HHHHHHhcCC----CCcceeeeeEEEC-CCCceEEEEEecCCCCCHHHH
Q 003307 777 REVKKLGNIK----HPNLVSLQGYYWG-PKEHEKLVISNYINAQSLAVY 820 (832)
Q Consensus 777 ~e~~~l~~~~----H~niv~l~g~~~~-~~~~~~~lv~e~~~~GsL~~~ 820 (832)
+|.+.+.+++ |...|.+-..|++ ... .+||||||+|+.+.+.
T Consensus 205 ~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~--~VLvmE~i~G~~l~d~ 251 (537)
T PRK04750 205 REAANASQLRRNFEDSDMLYVPEVYWDYCSE--TVMVMERMYGIPVSDV 251 (537)
T ss_pred HHHHHHHHHHHHccCCCCeecceeecccCCC--ceEEEeeecCccHHhH
Confidence 5555555442 4444443333432 233 7899999999999874
|
|
| >PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0029 Score=64.54 Aligned_cols=87 Identities=17% Similarity=0.171 Sum_probs=64.4
Q ss_pred ccCeee-eccCceEEEEEECCCCEEEEEEeccCC-------------hhhHHHHHHHHHHHhcCCCCcc--eeeeeEEEC
Q 003307 736 PAEVIG-RSCHGTLYKATLDSGSILAVKRLREGI-------------AKGKKEFAREVKKLGNIKHPNL--VSLQGYYWG 799 (832)
Q Consensus 736 ~~~~iG-~G~~g~Vy~~~~~~g~~vAvK~l~~~~-------------~~~~~~f~~e~~~l~~~~H~ni--v~l~g~~~~ 799 (832)
.+.+|| .|+.|+||+.... |..++||+..... ......+.+|++++.+++|+++ ++.+++...
T Consensus 35 ~~~~lg~~~g~gtv~~v~~~-~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~ 113 (239)
T PRK01723 35 QARVVGSAKGRGTTWFVQTP-GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVV 113 (239)
T ss_pred cCceeecCCCCccEEEEEeC-CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeee
Confidence 367898 8999999999885 7789999874321 0123457889999999999885 677777544
Q ss_pred CCCc--eEEEEEecCCC-CCHHHHHhc
Q 003307 800 PKEH--EKLVISNYINA-QSLAVYLQG 823 (832)
Q Consensus 800 ~~~~--~~~lv~e~~~~-GsL~~~l~~ 823 (832)
.... ..++|+||+++ ++|.+++..
T Consensus 114 ~~~~~~~~~lV~e~l~G~~~L~~~l~~ 140 (239)
T PRK01723 114 RHGLFYRADILIERIEGARDLVALLQE 140 (239)
T ss_pred ecCcceeeeEEEEecCCCCCHHHHHhc
Confidence 3221 13599999997 699988764
|
|
| >KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.00052 Score=67.75 Aligned_cols=84 Identities=12% Similarity=0.205 Sum_probs=64.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcC-CCCcceeeeeE-EECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNI-KHPNLVSLQGY-YWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~-~H~niv~l~g~-~~~~~~~~~~lv~e~~~ 813 (832)
...+|+|.||++-.++.+ ..+.+++|.+..... ..++|.+|...--.+ .|.||+.-+.. +.+.+. ...++||+|
T Consensus 29 ~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~t-t~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~--YvF~qE~aP 105 (378)
T KOG1345|consen 29 NKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQT-TQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDA--YVFVQEFAP 105 (378)
T ss_pred HHHhcccceeeEEeeeccCCceEEEeeccCcchh-hHHHHHHHhccceeeccchhhhHHHHHHhhcCce--EEEeeccCc
Confidence 567999999999999985 678899998854322 357899998664444 59999987755 445555 788999999
Q ss_pred CCCHHHHHhc
Q 003307 814 AQSLAVYLQG 823 (832)
Q Consensus 814 ~GsL~~~l~~ 823 (832)
.|+|.+-+..
T Consensus 106 ~gdL~snv~~ 115 (378)
T KOG1345|consen 106 RGDLRSNVEA 115 (378)
T ss_pred cchhhhhcCc
Confidence 9999876543
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0022 Score=58.44 Aligned_cols=104 Identities=13% Similarity=0.179 Sum_probs=38.4
Q ss_pred cccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCC
Q 003307 85 TIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKL 163 (832)
Q Consensus 85 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 163 (832)
.|.++++|+.+.+.. .+..... .|..+++|+.+.+..+ +..+....|.++++|+.+.+.+ .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344444555555442 2333323 4555555555555443 4434444455554555555543 3332334445555555
Q ss_pred CEeeCcCCCCCCccchhhhcCCCCCEEECc
Q 003307 164 KYLDLRANRFGGDIMHLLSQLGSVVHVDLS 193 (832)
Q Consensus 164 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls 193 (832)
+.+++..+ +.......|.++ +|+.+.+.
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 55555443 333333344443 44444443
|
|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.00016 Score=77.15 Aligned_cols=91 Identities=14% Similarity=0.122 Sum_probs=74.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh---hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA---KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...+|-|+||.|-..... ....+|+|.+++... ...+-...|-.+|-..+.|.||+||-.|.+.+. .|+.||-|
T Consensus 425 iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~ky--vYmLmEaC 502 (732)
T KOG0614|consen 425 IATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKY--VYMLMEAC 502 (732)
T ss_pred hhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchh--hhhhHHhh
Confidence 346899999999988874 333589998865422 123346788899999999999999999998888 99999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
-+|.|+..|+.++.++.
T Consensus 503 lGGElWTiLrdRg~Fdd 519 (732)
T KOG0614|consen 503 LGGELWTILRDRGSFDD 519 (732)
T ss_pred cCchhhhhhhhcCCccc
Confidence 99999999999988764
|
|
| >KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.00076 Score=74.61 Aligned_cols=83 Identities=18% Similarity=0.217 Sum_probs=68.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...+|.|+|+.|-+++. ++++..|||++.+.. .+-.+|+.++.+. .||||+++.+.|.+..+ .++|||++.+
T Consensus 327 ~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~----~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~--~~~v~e~l~g 400 (612)
T KOG0603|consen 327 REELGEGSFSAVKYCESSPTDQEPAVKIISKRA----DDNQDEIPISLLVRDHPNIVKSHDVYEDGKE--IYLVMELLDG 400 (612)
T ss_pred ccccCCCCccceeeeeccccccchhheeccccc----cccccccchhhhhcCCCcceeecceecCCce--eeeeehhccc
Confidence 34599999999999996 589999999996541 2345677776666 79999999999998887 9999999999
Q ss_pred CCHHHHHhcCC
Q 003307 815 QSLAVYLQGKG 825 (832)
Q Consensus 815 GsL~~~l~~~~ 825 (832)
|.+.+.+..++
T Consensus 401 ~ell~ri~~~~ 411 (612)
T KOG0603|consen 401 GELLRRIRSKP 411 (612)
T ss_pred cHHHHHHHhcc
Confidence 99988876554
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0012 Score=65.53 Aligned_cols=42 Identities=33% Similarity=0.457 Sum_probs=18.8
Q ss_pred CCCCCCCCEeeCcCC--CCCCccchhhhcCCCCCEEECccCcCc
Q 003307 157 FGGLGKLKYLDLRAN--RFGGDIMHLLSQLGSVVHVDLSNNQFS 198 (832)
Q Consensus 157 ~~~l~~L~~L~L~~N--~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 198 (832)
|-.|++|+.|.++.| ++.+..+.....+++|++|+|+.|++.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 333444555555555 333333333334455555555555444
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0049 Score=56.17 Aligned_cols=82 Identities=11% Similarity=0.147 Sum_probs=30.1
Q ss_pred CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCC
Q 003307 108 DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSV 187 (832)
Q Consensus 108 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 187 (832)
.|.++++|+.+.+.. .+..+....|.++++|+.+.+..+ +..+...+|.++++|+.+.+.+ .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344455555555542 344444444555555555555443 4433344455554455555533 2222223333334444
Q ss_pred CEEEC
Q 003307 188 VHVDL 192 (832)
Q Consensus 188 ~~L~L 192 (832)
+.+++
T Consensus 84 ~~i~~ 88 (129)
T PF13306_consen 84 KNIDI 88 (129)
T ss_dssp CEEEE
T ss_pred ccccc
Confidence 44443
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.00074 Score=78.86 Aligned_cols=131 Identities=24% Similarity=0.245 Sum_probs=88.8
Q ss_pred cEEEEEeCCCCCccccCccccc-CCCCCCEEEcCCCCCccc-CC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEE
Q 003307 66 YVTSIMLNDMGLVGNFSFPTII-GLKMLCNVSVSNNQLMGN-IT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLL 142 (832)
Q Consensus 66 ~v~~l~l~~~~l~g~~~~~~~~-~l~~L~~L~Ls~n~l~~~-~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 142 (832)
..+.+++++......--+..++ -|+.|+.|.+++-.+... .. -..++++|..||+|+.+++.+ ..+++|++|++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 3556666654432211122333 488999999998776543 22 466799999999999999966 788999999999
Q ss_pred Ecccccccc-cCCCCCCCCCCCCEeeCcCCCCCCcc--ch----hhhcCCCCCEEECccCcCc
Q 003307 143 NISSNSFEG-TFPSGFGGLGKLKYLDLRANRFGGDI--MH----LLSQLGSVVHVDLSNNQFS 198 (832)
Q Consensus 143 ~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~--~~----~l~~l~~L~~L~Ls~N~l~ 198 (832)
.+.+=.+.. ..-..+.+|++|++||+|..+..... .. .-..||+|+.||.|++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 998777663 12234678999999999988765332 11 1224666677776666555
|
|
| >COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0092 Score=63.89 Aligned_cols=84 Identities=25% Similarity=0.464 Sum_probs=69.6
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCCh---hhHHHHHHHHHHHhcCCCC-cceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIA---KGKKEFAREVKKLGNIKHP-NLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~---~~~~~f~~e~~~l~~~~H~-niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...+|.|+||.||++... ..+|+|.+..... .....|.+|+.+++.+.|+ +++++..++..... .++++||+
T Consensus 5 ~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~ 80 (384)
T COG0515 5 LRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGS--LYLVMEYV 80 (384)
T ss_pred EEeecCCCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCE--EEEEEecC
Confidence 356899999999999976 8899998854322 1367899999999999988 79999999966555 79999999
Q ss_pred CCCCHHHHHhcC
Q 003307 813 NAQSLAVYLQGK 824 (832)
Q Consensus 813 ~~GsL~~~l~~~ 824 (832)
.++++.+++...
T Consensus 81 ~~~~l~~~~~~~ 92 (384)
T COG0515 81 DGGSLEDLLKKI 92 (384)
T ss_pred CCCcHHHHHHhc
Confidence 999999777654
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=3e-05 Score=80.92 Aligned_cols=115 Identities=18% Similarity=0.123 Sum_probs=64.1
Q ss_pred CCCccccCCCcEEEEEeCCCCCccccCcccccCC-----CCCCEEEcCCCCCcccCC---CCCCCCCCCEEECCCCC-CC
Q 003307 56 NWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGL-----KMLCNVSVSNNQLMGNIT---DIGSIQSLEFLDLSHNL-FH 126 (832)
Q Consensus 56 ~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~---~~~~l~~L~~L~Ls~N~-l~ 126 (832)
.|.+..-+.+.++.+||......-. -+.+.++ ..|+.|.|.+..=.+.-+ .-..++++++|++.++. |+
T Consensus 101 ~~n~~AlD~~~~q~idL~t~~rDv~--g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iT 178 (483)
T KOG4341|consen 101 MWNKLALDGSCWQHIDLFTFQRDVD--GGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKIT 178 (483)
T ss_pred HhhhhhhccccceeeehhcchhcCC--CcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceecc
Confidence 5776655666778888765543211 1122221 357788887776554443 23457888888777774 33
Q ss_pred ccCcccc-cCCCCCCEEEcccc-cccccCCC-CCCCCCCCCEeeCcCCC
Q 003307 127 GLIPSGI-VSLKNLMLLNISSN-SFEGTFPS-GFGGLGKLKYLDLRANR 172 (832)
Q Consensus 127 ~~~p~~~-~~l~~L~~L~Ls~N-~l~~~~p~-~~~~l~~L~~L~L~~N~ 172 (832)
...-..+ ..+++|++|+|..+ .|+...-. --.++++|++|+++.+.
T Consensus 179 d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~ 227 (483)
T KOG4341|consen 179 DSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP 227 (483)
T ss_pred HHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc
Confidence 3222222 24677777777763 33322211 12356777777777664
|
|
| >cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0042 Score=62.70 Aligned_cols=84 Identities=15% Similarity=0.192 Sum_probs=61.9
Q ss_pred CeeeeccCceEEEEEECCCCEEEEEEeccCCh-hhHHHHHHHHHHHhcCCCC--cceeeeeEEECCCC-ceEEEEEecCC
Q 003307 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHP--NLVSLQGYYWGPKE-HEKLVISNYIN 813 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~-~~~~~f~~e~~~l~~~~H~--niv~l~g~~~~~~~-~~~~lv~e~~~ 813 (832)
..++.|..+.||+++..+|+.+++|....... .....+..|.+++..+++. .+.++++++..... +..++||||++
T Consensus 4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i~ 83 (223)
T cd05154 4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERVD 83 (223)
T ss_pred eecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEeC
Confidence 45899999999999987778999998754321 1345688999999998764 45677777654320 12689999999
Q ss_pred CCCHHHHH
Q 003307 814 AQSLAVYL 821 (832)
Q Consensus 814 ~GsL~~~l 821 (832)
++++.+.+
T Consensus 84 G~~l~~~~ 91 (223)
T cd05154 84 GRVLRDRL 91 (223)
T ss_pred CEecCCCC
Confidence 98886644
|
This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain |
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.00019 Score=71.01 Aligned_cols=84 Identities=21% Similarity=0.168 Sum_probs=47.9
Q ss_pred CCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccc-hhhhcCCCCCEE
Q 003307 112 IQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIM-HLLSQLGSVVHV 190 (832)
Q Consensus 112 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L 190 (832)
+.+.+.|++-++.|+++ .-...++.|++|.|+-|+|+.. ..|..+++|++|+|..|.|..... ..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34455566666665544 2234566666666666666643 235666666666666666653221 234566666666
Q ss_pred ECccCcCcc
Q 003307 191 DLSNNQFSG 199 (832)
Q Consensus 191 ~Ls~N~l~~ 199 (832)
.|..|.-.|
T Consensus 94 WL~ENPCc~ 102 (388)
T KOG2123|consen 94 WLDENPCCG 102 (388)
T ss_pred hhccCCccc
Confidence 666665543
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.00021 Score=70.72 Aligned_cols=100 Identities=23% Similarity=0.197 Sum_probs=66.8
Q ss_pred CCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccC-CCCCCCCCCCCEee
Q 003307 89 LKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTF-PSGFGGLGKLKYLD 167 (832)
Q Consensus 89 l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~ 167 (832)
+.+.+.|++.++.+..+ .-..+++.|++|.||-|.|+...| |..+++|++|+|..|.|.... -..+.++++|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 34455555555555432 124457778888888888876644 777888888888888887431 12357888899999
Q ss_pred CcCCCCCCccch-----hhhcCCCCCEEE
Q 003307 168 LRANRFGGDIMH-----LLSQLGSVVHVD 191 (832)
Q Consensus 168 L~~N~l~~~~~~-----~l~~l~~L~~L~ 191 (832)
|..|.-.+.-+. .+.-|++|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 988887665543 456677777665
|
|
| >cd05151 ChoK Choline Kinase (ChoK) | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.016 Score=55.69 Aligned_cols=76 Identities=12% Similarity=0.152 Sum_probs=54.7
Q ss_pred CeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCccee-eeeEEECCCCceEEEEEecCCCCC
Q 003307 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVS-LQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~-l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
..++.|.++.||+++.. |..|++|....... ....+..|++++..+.+.++++ ++++. .+. .++||||+++.+
T Consensus 4 ~~l~~G~~~~vy~~~~~-~~~~~lK~~~~~~~-~~~~~~~E~~~l~~l~~~~~~P~~~~~~--~~~--~~lv~e~i~G~~ 77 (170)
T cd05151 4 SPLKGGMTNKNYRVEVA-NKKYVVRIPGNGTE-LLINRENEAENSKLAAEAGIGPKLYYFD--PET--GVLITEFIEGSE 77 (170)
T ss_pred eecCCcccCceEEEEEC-CeEEEEEeCCCCcc-cccCHHHHHHHHHHHHHhCCCCceEEEe--CCC--CeEEEEecCCCc
Confidence 45789999999999975 78899998754321 1234678898998887666554 44332 233 579999999988
Q ss_pred HHH
Q 003307 817 LAV 819 (832)
Q Consensus 817 L~~ 819 (832)
+.+
T Consensus 78 l~~ 80 (170)
T cd05151 78 LLT 80 (170)
T ss_pred ccc
Confidence 764
|
The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph |
| >KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.025 Score=60.76 Aligned_cols=83 Identities=14% Similarity=0.177 Sum_probs=60.1
Q ss_pred cCeeeeccCceEEEEEECC--CCEEEEEEeccCChhhHHHHHHHHHHHhcCCC----CcceeeeeEEE-CCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLDS--GSILAVKRLREGIAKGKKEFAREVKKLGNIKH----PNLVSLQGYYW-GPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~--g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H----~niv~l~g~~~-~~~~~~~~lv~ 809 (832)
...||+|+||.||.+.... ...+|+|.-..........+..|+.++..+.+ +++.+++.... .... .++||
T Consensus 23 ~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~--~~iVM 100 (322)
T KOG1164|consen 23 GKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDF--NFIVM 100 (322)
T ss_pred eeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCce--eEEEE
Confidence 6789999999999999643 35788887644322222267888888888863 57778877763 4445 89999
Q ss_pred ecCCCCCHHHHHh
Q 003307 810 NYINAQSLAVYLQ 822 (832)
Q Consensus 810 e~~~~GsL~~~l~ 822 (832)
+.+. -+|.++..
T Consensus 101 ~l~G-~sL~dl~~ 112 (322)
T KOG1164|consen 101 SLLG-PSLEDLRK 112 (322)
T ss_pred eccC-ccHHHHHH
Confidence 8664 59999764
|
|
| >KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.0095 Score=62.08 Aligned_cols=85 Identities=12% Similarity=0.177 Sum_probs=65.6
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCC-CC-----cceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIK-HP-----NLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~-H~-----niv~l~g~~~~~~~~~~~lv~ 809 (832)
-..+|+|.||+|-++.. ..+..||||+++.-.. ..+.-.-|++++.++. +. .+|.+.+|+...+. ..||+
T Consensus 94 ~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~k-YreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrgh--iCivf 170 (415)
T KOG0671|consen 94 VDLLGEGTFGKVVECWDRETKEHVALKIIKNVDK-YREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGH--ICIVF 170 (415)
T ss_pred hhhhcCCcccceEEEeecCCCceehHHHHHHHHH-HhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCc--eEEEE
Confidence 45689999999999986 3689999999864322 3455678999999983 22 36788888877777 99999
Q ss_pred ecCCCCCHHHHHhcCC
Q 003307 810 NYINAQSLAVYLQGKG 825 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~ 825 (832)
|.|. -|++|+|.+..
T Consensus 171 ellG-~S~~dFlk~N~ 185 (415)
T KOG0671|consen 171 ELLG-LSTFDFLKENN 185 (415)
T ss_pred eccC-hhHHHHhccCC
Confidence 9884 39999998755
|
|
| >KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.032 Score=54.55 Aligned_cols=81 Identities=16% Similarity=0.218 Sum_probs=57.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCC-cceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHP-NLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~-niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||.+|.|.. .+|+.||||.=..... ......|.++.+-++|- .|..+.-|..+... -.+|||.. +
T Consensus 20 vrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~--hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~y--nvlVMdLL-G 94 (341)
T KOG1163|consen 20 VRKIGSGSFGDIYLGISITSGEEVAIKLESSKAK--HPQLLYESKVYRILQGGVGIPHIRHYGTEKDY--NVLVMDLL-G 94 (341)
T ss_pred EEeecCCchhheeeeeeccCCceEEEEeecccCC--CcchhHHHHHHHHhccCCCCchhhhhcccccc--ceeeeecc-C
Confidence 45799999999999985 7899999997543222 13456677777777653 44455545544455 78999987 4
Q ss_pred CCHHHHHh
Q 003307 815 QSLAVYLQ 822 (832)
Q Consensus 815 GsL~~~l~ 822 (832)
-||+++..
T Consensus 95 PsLEdLfn 102 (341)
T KOG1163|consen 95 PSLEDLFN 102 (341)
T ss_pred ccHHHHHH
Confidence 69988764
|
|
| >KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.04 Score=59.32 Aligned_cols=86 Identities=13% Similarity=0.139 Sum_probs=66.2
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCC-----C---CcceeeeeEEECCCCc--eE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIK-----H---PNLVSLQGYYWGPKEH--EK 805 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~-----H---~niv~l~g~~~~~~~~--~~ 805 (832)
...+|=|.|++||.|.. .+.+.||+|+.+.... ..+.-..||++|.+++ | ..||+|+.+|.....+ .+
T Consensus 83 ~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAqh-YtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGpNG~HV 161 (590)
T KOG1290|consen 83 QRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQH-YTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGPNGQHV 161 (590)
T ss_pred EEeccccccceeEEEeeccCCeEEEEEEEehhhH-HHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCCCCcEE
Confidence 45689999999999986 4778999999865433 3456788999998873 3 3699999998654332 58
Q ss_pred EEEEecCCCCCHHHHHhcC
Q 003307 806 LVISNYINAQSLAVYLQGK 824 (832)
Q Consensus 806 ~lv~e~~~~GsL~~~l~~~ 824 (832)
.+|+|++.. +|..+|...
T Consensus 162 CMVfEvLGd-nLLklI~~s 179 (590)
T KOG1290|consen 162 CMVFEVLGD-NLLKLIKYS 179 (590)
T ss_pred EEEehhhhh-HHHHHHHHh
Confidence 999999864 888888643
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.00045 Score=66.58 Aligned_cols=87 Identities=18% Similarity=0.212 Sum_probs=61.7
Q ss_pred cccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCC
Q 003307 85 TIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLK 164 (832)
Q Consensus 85 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 164 (832)
.+..+...+.||++.|++...-..|+.++.|..||++.|.+. ..|.+++.+..++.+++..|..+ ..|.+++.+++++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 455667777777777777654446666777777777777776 55677777777777777777776 5677777777777
Q ss_pred EeeCcCCCC
Q 003307 165 YLDLRANRF 173 (832)
Q Consensus 165 ~L~L~~N~l 173 (832)
++++-.|.+
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 777777664
|
|
| >COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.05 Score=51.21 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=58.0
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCccee-eeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVS-LQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~-l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|.+|.||.|.+. |..+|+|+-+... ....+..|.+++..+.--.+.+ ++.|- . .++.|||+.+-
T Consensus 27 ~~~L~KG~~s~Vyl~~~~-~~~~a~Kvrr~ds--~r~~l~kEakiLeil~g~~~~p~vy~yg----~--~~i~me~i~G~ 97 (201)
T COG2112 27 EKELAKGTTSVVYLGEWR-GGEVALKVRRRDS--PRRNLEKEAKILEILAGEGVTPEVYFYG----E--DFIRMEYIDGR 97 (201)
T ss_pred hhhhhcccccEEEEeecc-CceEEEEEecCCc--chhhHHHHHHHHHHhhhcCCCceEEEec----h--hhhhhhhhcCc
Confidence 457999999999999985 6689999875443 3467899999999888777754 33331 2 45669999998
Q ss_pred CHHHHHh
Q 003307 816 SLAVYLQ 822 (832)
Q Consensus 816 sL~~~l~ 822 (832)
.|.++-.
T Consensus 98 ~L~~~~~ 104 (201)
T COG2112 98 PLGKLEI 104 (201)
T ss_pred chhhhhh
Confidence 8887654
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.0095 Score=35.27 Aligned_cols=12 Identities=33% Similarity=0.562 Sum_probs=5.4
Q ss_pred CCEEEccccccc
Q 003307 139 LMLLNISSNSFE 150 (832)
Q Consensus 139 L~~L~Ls~N~l~ 150 (832)
|++|||++|+|+
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.011 Score=35.01 Aligned_cols=21 Identities=48% Similarity=0.676 Sum_probs=12.0
Q ss_pred CCCEEECCCCCCCccCcccccC
Q 003307 114 SLEFLDLSHNLFHGLIPSGIVS 135 (832)
Q Consensus 114 ~L~~L~Ls~N~l~~~~p~~~~~ 135 (832)
+|++|||++|+|+ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566666666666 44544543
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.05 Score=59.35 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=58.8
Q ss_pred cCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCc--eEEEEEecCCC-CCHHH
Q 003307 744 CHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEH--EKLVISNYINA-QSLAV 819 (832)
Q Consensus 744 ~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~--~~~lv~e~~~~-GsL~~ 819 (832)
--.+.||+.. -||..++.|++...+.+.......-++.++++.|.|+|++...+.+...+ -..+||+|.|+ ++|.+
T Consensus 288 ~~~Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d 367 (655)
T KOG3741|consen 288 FSITTYKATSNVDGNAYVLKRLHGDRDQSTNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYD 367 (655)
T ss_pred ccceeEeeeeccCCceeeeeeeccccccCcccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCchHHH
Confidence 3457899986 49999999999544444443445667889999999999999887644333 38899999995 58887
Q ss_pred HH
Q 003307 820 YL 821 (832)
Q Consensus 820 ~l 821 (832)
+-
T Consensus 368 ~~ 369 (655)
T KOG3741|consen 368 LY 369 (655)
T ss_pred HH
Confidence 64
|
|
| >PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli [] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.024 Score=50.65 Aligned_cols=44 Identities=25% Similarity=0.402 Sum_probs=33.8
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHh
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLG 783 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~ 783 (832)
.+.||.|+.|+||+|++++|+.||||+.+.+. .+.+...+++|.
T Consensus 16 ~~PlasASiaQVh~a~l~~g~~VaVKV~rP~i---~~~i~~Dl~~l~ 59 (119)
T PF03109_consen 16 PEPLASASIAQVHRARLKDGEEVAVKVQRPGI---EEQIEADLRILR 59 (119)
T ss_pred cchhhheehhhheeeeecccchhhhhhcchHH---HHHHHHHHHHHH
Confidence 46799999999999999999999999986542 234445555544
|
These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins. |
| >COG0661 AarF Predicted unusual protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.071 Score=60.19 Aligned_cols=31 Identities=35% Similarity=0.425 Sum_probs=27.8
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREG 767 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~ 767 (832)
.+.|+.++.|+||+|++++|+.||||+.+.+
T Consensus 130 ~~PiAsASIaQVH~A~L~sG~~VAVKVqrPg 160 (517)
T COG0661 130 PEPIASASIAQVHRAVLKSGEEVAVKVQRPG 160 (517)
T ss_pred CCchhhhhHhhheeEEecCCCEEEEEecCCC
Confidence 4779999999999999999999999988543
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.0012 Score=63.67 Aligned_cols=88 Identities=18% Similarity=0.187 Sum_probs=75.1
Q ss_pred CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCC
Q 003307 108 DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSV 187 (832)
Q Consensus 108 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 187 (832)
++......+.||++.|++... -..|+-++.|..|+++.|++. ..|..++.+..+..+++..|+.+ ..|.+++.++.+
T Consensus 37 ei~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 788889999999999998744 456788899999999999998 68999999999999999999886 677788888888
Q ss_pred CEEECccCcCc
Q 003307 188 VHVDLSNNQFS 198 (832)
Q Consensus 188 ~~L~Ls~N~l~ 198 (832)
+++++-.|.|.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 88888877765
|
|
| >KOG1235 consensus Predicted unusual protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.1 Score=58.80 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=27.6
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREG 767 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~ 767 (832)
...||.-+.|+||+|++++|+.||||+.+.+
T Consensus 166 ~~piaaASlaQVhrA~L~~G~~VaVKVQ~P~ 196 (538)
T KOG1235|consen 166 EEPIAAASLAQVHRARLKNGEDVAVKVQHPG 196 (538)
T ss_pred cchhhhcchhheEEEEecCCCEEEEEecCcC
Confidence 4679999999999999999999999988654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 832 | ||||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 1e-24 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 6e-23 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 2e-14 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 1e-24 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 2e-22 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 3e-14 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 2e-10 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 1e-09 | ||
| 3tl8_A | 349 | The Avrptob-Bak1 Complex Reveals Two Structurally S | 6e-06 | ||
| 1o6s_A | 466 | Internalin (Listeria Monocytogenes) E-Cadherin (Hum | 1e-05 | ||
| 3uim_A | 326 | Structural Basis For The Impact Of Phosphorylation | 1e-05 | ||
| 2omz_A | 466 | Crystal Structure Of Inla Y369a/hec1 Complex Length | 1e-05 | ||
| 2omv_A | 461 | Crystal Structure Of Inla S192n Y369s/hec1 Complex | 3e-05 | ||
| 2omy_A | 461 | Crystal Structure Of Inla S192n/hec1 Complex Length | 3e-05 | ||
| 2omt_A | 462 | Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt | 4e-05 | ||
| 2omu_A | 462 | Crystal Structure Of Inla G194s+s Y369s/hec1 Comple | 4e-05 | ||
| 2omx_A | 462 | Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX | 4e-05 | ||
| 3ulu_A | 694 | Structure Of Quaternary Complex Of Human Tlr3ecd Wi | 3e-04 | ||
| 1ziw_A | 680 | Human Toll-Like Receptor 3 Extracellular Domain Str | 4e-04 | ||
| 2a0z_A | 705 | The Molecular Structure Of Toll-like Receptor 3 Lig | 4e-04 | ||
| 3f88_A | 349 | Glycogen Synthase Kinase 3beta Inhibitor Complex Le | 6e-04 | ||
| 1o9u_A | 350 | Glycogen Synthase Kinase 3 Beta Complexed With Axin | 7e-04 | ||
| 1h8f_A | 352 | Glycogen Synthase Kinase 3 Beta. Length = 352 | 8e-04 | ||
| 1uv5_A | 350 | Glycogen Synthase Kinase 3 Beta Complexed With 6-Br | 8e-04 |
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349 | Back alignment and structure |
|
| >pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466 | Back alignment and structure |
|
| >pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326 | Back alignment and structure |
|
| >pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466 | Back alignment and structure |
|
| >pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461 | Back alignment and structure |
|
| >pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461 | Back alignment and structure |
|
| >pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462 | Back alignment and structure |
|
| >pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694 | Back alignment and structure |
|
| >pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680 | Back alignment and structure |
|
| >pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705 | Back alignment and structure |
|
| >pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex Length = 349 | Back alignment and structure |
|
| >pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide Length = 350 | Back alignment and structure |
|
| >pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta. Length = 352 | Back alignment and structure |
|
| >pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With 6-Bromoindirubin-3'-Oxime Length = 350 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 832 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 2e-88 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 1e-87 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 8e-66 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 1e-45 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 7e-55 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 5e-48 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 8e-43 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 2e-13 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 2e-07 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 6e-54 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 2e-49 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 2e-47 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 3e-16 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 2e-50 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 1e-46 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 1e-41 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 2e-09 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 9e-50 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 3e-42 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 4e-40 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 2e-39 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 2e-39 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 1e-47 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 3e-45 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 2e-44 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 2e-34 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 2e-33 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 2e-15 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 6e-05 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 1e-44 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 3e-42 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 5e-36 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 6e-34 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 5e-43 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 6e-39 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 1e-37 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 7e-31 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 9e-16 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 1e-15 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 2e-13 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 8e-39 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 5e-32 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 4e-36 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 5e-36 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 2e-30 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 4e-22 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 2e-09 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 4e-35 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 1e-31 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 4e-26 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 2e-21 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 2e-20 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 2e-13 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 2e-34 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 5e-34 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 3e-19 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 7e-16 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 8e-13 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 3e-34 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 8e-30 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 1e-27 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 4e-21 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 1e-33 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 2e-24 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 6e-20 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 4e-29 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 2e-24 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 2e-20 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 9e-29 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 1e-28 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 5e-12 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 2e-10 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 3e-06 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 3e-06 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 3e-28 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 1e-16 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 2e-16 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 1e-11 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 3e-06 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 1e-27 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 1e-25 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 1e-26 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 6e-24 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 5e-11 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 6e-09 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 8e-26 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 3e-24 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 6e-24 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 2e-21 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 2e-25 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 2e-22 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 1e-18 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 3e-24 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 8e-15 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 1e-06 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 9e-23 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 3e-20 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 5e-18 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 3e-15 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 2e-21 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 4e-17 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 3e-14 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 8e-12 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 4e-20 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 4e-18 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 9e-13 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 7e-06 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 6e-20 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 1e-18 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 6e-17 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 3e-15 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 5e-14 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 3e-09 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 2e-19 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 3e-17 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 3e-13 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 3e-12 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 9e-17 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 1e-12 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 2e-06 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 2e-16 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 8e-16 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 4e-15 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 8e-08 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 3e-16 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 9e-13 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 7e-10 | |
| 3uim_A | 326 | Brassinosteroid insensitive 1-associated receptor; | 8e-16 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 9e-16 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 2e-14 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 7e-14 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 2e-12 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 1e-07 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 4e-15 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 4e-14 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 8e-10 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 2e-08 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 6e-08 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 4e-15 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 9e-15 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 6e-11 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 1e-09 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 6e-15 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 2e-14 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 3e-11 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 3e-09 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 7e-15 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 1e-14 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 1e-13 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 3e-12 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 4e-09 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 2e-14 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 1e-12 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 8e-11 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 2e-10 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 2e-06 | |
| 2qkw_B | 321 | Protein kinase; three-helix bundle motif, AVRPTO-P | 1e-13 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 1e-13 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 5e-13 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 4e-07 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 2e-06 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 2e-13 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 1e-10 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 5e-09 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 2e-07 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 3e-07 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 4e-07 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 7e-06 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 2e-13 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 3e-08 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 6e-08 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 4e-13 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 9e-11 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 1e-09 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 2e-12 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 3e-12 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 7e-11 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 4e-10 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 1e-07 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 9e-07 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 1e-05 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 2e-05 | |
| 2nru_A | 307 | Interleukin-1 receptor-associated kinase 4; inhibi | 6e-11 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 8e-11 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 1e-10 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 9e-09 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 3e-06 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 9e-11 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 2e-07 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 8e-07 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 2e-10 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 2e-10 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 4e-07 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 7e-07 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 2e-10 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 4e-10 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 9e-05 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 2e-04 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 2e-10 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 7e-10 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 1e-09 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 5e-09 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 6e-09 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 1e-06 | |
| 3s95_A | 310 | LIMK-1, LIM domain kinase 1; structural genomics, | 2e-09 | |
| 3kmu_A | 271 | ILK, integrin-linked kinase; cell adhesion, ANK re | 5e-09 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 7e-09 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 2e-08 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 2e-05 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 9e-05 | |
| 4f0f_A | 287 | Serine/threonine-protein kinase ROCO4; LRRK2, ATP- | 2e-08 | |
| 3dtc_A | 271 | Mitogen-activated protein kinase kinase kinase 9; | 3e-08 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 3e-08 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 5e-08 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 4e-07 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 6e-06 | |
| 3soc_A | 322 | Activin receptor type-2A; structural genomics cons | 3e-08 | |
| 2eva_A | 307 | TAK1 kinase - TAB1 chimera fusion protein; transfe | 5e-08 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 2e-07 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 5e-07 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 2e-05 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 5e-05 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 2e-04 | |
| 3p86_A | 309 | Serine/threonine-protein kinase CTR1; ETR1, ERS1, | 2e-07 | |
| 3g2f_A | 336 | Bone morphogenetic protein receptor type-2; kinase | 2e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-04 | |
| 2w1i_A | 326 | JAK2; chromosomal rearrangement, nucleotide-bindin | 1e-06 | |
| 3lxl_A | 327 | Tyrosine-protein kinase JAK3; TYK2, inflammation, | 1e-06 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 2e-06 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 3e-04 | |
| 3ugc_A | 295 | Tyrosine-protein kinase JAK2; small molecule inhib | 2e-06 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 2e-06 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 8e-05 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 8e-04 | |
| 3lb7_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 5e-06 | |
| 3t9t_A | 267 | Tyrosine-protein kinase ITK/TSK; kinase domain, al | 5e-06 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 7e-06 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 5e-05 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 1e-04 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 1e-05 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 2e-04 | |
| 3og7_A | 289 | AKAP9-BRAF fusion protein; proto-oncogene, V600E, | 1e-05 | |
| 1t4h_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 1e-05 | |
| 3gen_A | 283 | Tyrosine-protein kinase BTK; bruton'S tyrosine kin | 1e-05 | |
| 2clq_A | 295 | Mitogen-activated protein kinase kinase kinase 5; | 1e-05 | |
| 2y4i_B | 319 | KSR2, HKSR2, kinase suppressor of RAS 2; transfera | 1e-05 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 1e-05 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 4e-05 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 7e-05 | |
| 3lzb_A | 327 | Epidermal growth factor receptor; epidermal growth | 2e-05 | |
| 4e5w_A | 302 | Tyrosine-protein kinase JAK1; kinase domain, trans | 2e-05 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 2e-05 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 5e-05 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 1e-04 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 1e-04 | |
| 3sxs_A | 268 | Cytoplasmic tyrosine-protein kinase BMX; transfera | 2e-05 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 3e-05 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 4e-05 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 5e-04 | |
| 4aoj_A | 329 | High affinity nerve growth factor receptor; transf | 3e-05 | |
| 1qpc_A | 279 | LCK kinase; alpha beta fold, transferase; HET: PTR | 3e-05 | |
| 3v5q_A | 297 | NT-3 growth factor receptor; kinase domain, kinase | 3e-05 | |
| 1qcf_A | 454 | Haematopoetic cell kinase (HCK); tyrosine kinase-i | 3e-05 | |
| 1k9a_A | 450 | Carboxyl-terminal SRC kinase; COOH-terminal SRC ki | 4e-05 | |
| 1fmk_A | 452 | C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros | 4e-05 | |
| 3uto_A | 573 | Twitchin; kinase, muscle sarcomere, transferase; H | 4e-05 | |
| 3kul_A | 325 | Ephrin type-A receptor 8; ATP-binding, kinase, nuc | 4e-05 | |
| 2a19_B | 284 | Interferon-induced, double-stranded RNA-activated | 5e-05 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 5e-05 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 1e-04 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 4e-04 | |
| 2h8h_A | 535 | Proto-oncogene tyrosine-protein kinase SRC; SRC ki | 5e-05 | |
| 1byg_A | 278 | CSK, protein (C-terminal SRC kinase); protein kina | 5e-05 | |
| 3poz_A | 327 | Epidermal growth factor receptor; kinase domain, a | 5e-05 | |
| 3lxp_A | 318 | Non-receptor tyrosine-protein kinase TYK2; JAK3, i | 7e-05 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 7e-05 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 8e-05 | |
| 3q4u_A | 301 | Activin receptor type-1; structural genomics conso | 7e-05 | |
| 3kfa_A | 288 | Tyrosine-protein kinase ABL1; CML, drug resistance | 8e-05 | |
| 1kob_A | 387 | Twitchin; kinase, intrasteric regulation; 2.30A {A | 8e-05 | |
| 3p23_A | 432 | Serine/threonine-protein kinase/endoribonuclease; | 8e-05 | |
| 3cc6_A | 281 | Protein tyrosine kinase 2 beta; focal adhesion kin | 8e-05 | |
| 1mp8_A | 281 | Focal adhesion kinase 1; tyrosine protein kinase, | 9e-05 | |
| 2x4f_A | 373 | Myosin light chain kinase family member 4; LUNG, b | 1e-04 | |
| 2ozo_A | 613 | Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t | 1e-04 | |
| 1u59_A | 287 | Tyrosine-protein kinase ZAP-70; transferase; HET: | 1e-04 | |
| 2j0j_A | 656 | Focal adhesion kinase 1; cell migration, FERM, tra | 1e-04 | |
| 3gxj_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 1e-04 | |
| 3f66_A | 298 | Hepatocyte growth factor receptor; C-Met, protein | 1e-04 | |
| 1opk_A | 495 | P150, C-ABL, proto-oncogene tyrosine-protein kinas | 1e-04 | |
| 3kex_A | 325 | Receptor tyrosine-protein kinase ERBB-3; kinase do | 1e-04 | |
| 2qol_A | 373 | Ephrin receptor; receptor tyrosine kinase, juxtame | 2e-04 | |
| 3brb_A | 313 | Proto-oncogene tyrosine-protein kinase MER; ATP-bi | 2e-04 | |
| 1u46_A | 291 | ACK-1, activated CDC42 kinase 1; tyrosine kinase, | 2e-04 | |
| 3qup_A | 323 | Tyrosine-protein kinase receptor TYRO3; protein ki | 2e-04 | |
| 4aaa_A | 331 | Cyclin-dependent kinase-like 2; transferase, phosp | 2e-04 | |
| 1fvr_A | 327 | Tyrosine-protein kinase TIE-2; tyrosine kinase, tr | 2e-04 | |
| 1xbb_A | 291 | Tyrosine-protein kinase SYK; gleevec, STI-571, ima | 2e-04 | |
| 1mqb_A | 333 | Ephrin type-A receptor 2; tyrosine protein kinase, | 2e-04 | |
| 4fvq_A | 289 | Tyrosine-protein kinase JAK2; janus protein kinase | 2e-04 | |
| 3f3z_A | 277 | Calcium/calmodulin-dependent protein kinase with d | 2e-04 | |
| 3c1x_A | 373 | Hepatocyte growth factor receptor; receptor tyrosi | 3e-04 | |
| 3uqc_A | 286 | Probable conserved transmembrane protein; structur | 3e-04 | |
| 1b6c_B | 342 | TGF-B superfamily receptor type I; complex (isomer | 3e-04 | |
| 4agu_A | 311 | Cyclin-dependent kinase-like 1; transferase, phosp | 3e-04 | |
| 3c0i_A | 351 | Peripheral plasma membrane protein CASK; neurexin, | 4e-04 | |
| 3zzw_A | 289 | Tyrosine-protein kinase transmembrane receptor RO; | 4e-04 | |
| 3e3p_A | 360 | Protein kinase, putative glycogen synthase kinase; | 5e-04 | |
| 1luf_A | 343 | Muscle-specific tyrosine kinase receptor MUSK; pho | 5e-04 | |
| 2rio_A | 434 | Serine/threonine-protein kinase/endoribonuclease I | 5e-04 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 5e-04 | |
| 1j1b_A | 420 | Glycogen synthase kinase-3 beta; complex, TAU, AMP | 5e-04 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 5e-04 | |
| 3cbl_A | 377 | C-FES, proto-oncogene tyrosine-protein kinase FES/ | 5e-04 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 6e-04 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 6e-04 | |
| 3hko_A | 345 | Calcium/calmodulin-dependent protein kinase with d | 7e-04 | |
| 2yfx_A | 327 | Tyrosine-protein kinase receptor; nucleotide-bindi | 7e-04 | |
| 3pls_A | 298 | Macrophage-stimulating protein receptor; protein k | 7e-04 | |
| 3l9p_A | 367 | Anaplastic lymphoma kinase; kinase domain, ATP-bin | 8e-04 | |
| 2jam_A | 304 | Calcium/calmodulin-dependent protein kinase type 1 | 8e-04 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 295 bits (758), Expect = 2e-88
Identities = 144/520 (27%), Positives = 226/520 (43%), Gaps = 74/520 (14%)
Query: 19 SDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITCTNGYVTSIMLNDMGLV 78
+ L+ K + D + ++ W + + + C + G+TC + VTSI L+ L
Sbjct: 12 REIHQLISFKDVL-PDKN--LLPDWSS---NKNPC--TFDGVTCRDDKVTSIDLSSKPLN 63
Query: 79 GNFSF--PTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSG--IV 134
FS +++ L L ++ +SN+ + G+++ SL LDLS N G + + +
Sbjct: 64 VGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLG 123
Query: 135 SLKNLMLLNISSNSFEGTFP-SGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLS 193
S L LN+SSN+ + SG L L+ L DLS
Sbjct: 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL------------------------DLS 159
Query: 194 NNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGA 253
N SG+ +G S +++L IS N + G++ NLE D S+N+
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDV-DVSRCV---NLEFLDVSSNNFSTG 215
Query: 254 IPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKK 313
IP +L+ L + N+LSG A+ + L L++S NQ GP+ + +L+
Sbjct: 216 IPFLGDCSALQHLDISGNKLSGDFSRAISTCTE--LKLLNISSNQFVGPIPPLPLKSLQY 273
Query: 314 VNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQ 373
++L+ NK +G +P LSG + + LS N G VP
Sbjct: 274 LSLAENKFTGEIPD-------------FLSGACDTLTG-------LDLSGNHFYGAVPPF 313
Query: 374 TSQFLRLTSFKVSNNSLEGDLPA-VLGTYPELKVIDLSLNHLNGFLLPSFF-TSTKLTDL 431
L S +S+N+ G+LP L LKV+DLS N +G L S S L L
Sbjct: 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373
Query: 432 NLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLS 491
+LS NNFSGP+ P+ +L L L N +G++ P +S LV L+LS
Sbjct: 374 DLSSNNFSGPIL-------PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426
Query: 492 NNKFEGSIPDGLPN--GLKEFNVSFNNLSGVVPENLRNFP 529
N G+IP L + L++ + N L G +P+ L
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 293 bits (753), Expect = 1e-87
Identities = 131/483 (27%), Positives = 207/483 (42%), Gaps = 36/483 (7%)
Query: 68 TSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHG 127
+ ++ + G+ + L+ L VS+N I +G +L+ LD+S N G
Sbjct: 181 KHLAISGNKISGDVDVSRCVNLEFL---DVSSNNFSTGIPFLGDCSALQHLDISGNKLSG 237
Query: 128 LIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDI-MHLLSQLGS 186
I + L LLNISSN F G P L L+YL L N+F G+I L +
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDT 295
Query: 187 VVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDAS 246
+ +DLS N F G++ G S ++ L +S N+ GEL P D + L+V D S
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGS---CSLLESLALSSNNFSGEL-PMDTLLKMRGLKVLDLS 351
Query: 247 NNHLVGAIPS--FNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPV- 303
N G +P N SL L L SN SG + L Q L EL L N G +
Sbjct: 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
Query: 304 GSITSAT-LKKVNLSSNKLSGSLPARVGHCT---IVDLSNNRLSGDLSRMQNWGN--YVE 357
++++ + L ++LS N LSG++P+ +G + + L N L G++ Q +E
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP--QELMYVKTLE 469
Query: 358 DIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGF 417
+ L N LTG +P+ S L +SNN L G++P +G L ++ LS N +G
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Query: 418 LLPSFFTSTKLTDLNLSGNNFSGPLP------LQEIQNNPSTGST-------QNLSLTSL 464
+ L L+L+ N F+G +P +I N G
Sbjct: 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589
Query: 465 DLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPN--GLKEFNVSFNNLSGVVP 522
G +++ N+++ + G N + ++S+N LSG +P
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649
Query: 523 ENL 525
+ +
Sbjct: 650 KEI 652
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 233 bits (596), Expect = 8e-66
Identities = 109/457 (23%), Positives = 178/457 (38%), Gaps = 94/457 (20%)
Query: 92 LCNVSVSNNQLMGNI-TDIGSIQ--SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNS 148
L + +S+N G I ++ +L+ L L +N F G IP + + L+ L++S N
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 149 FEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDS 208
GT PS G L KL+ L L N G+I L + ++ + L N +G + GL +
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 209 SFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILR 267
+ NL SNN L G IP + +L IL+
Sbjct: 490 T-----------------------------NLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 268 LGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPA 327
L +N SG++P L G S L ++L++N +G++PA
Sbjct: 521 LSNNSFSGNIPAEL----------------------GDCRS--LIWLDLNTNLFNGTIPA 556
Query: 328 RVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSN 387
+ + ++ N ++G ++ H + N
Sbjct: 557 AMFKQS-GKIAANFIAGKRYVYIKNDGMKKECHGAGN----------------------L 593
Query: 388 NSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEI 447
+G L +++ G P+F + + L++S N SG +P +EI
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP-KEI 652
Query: 448 QNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPN-- 505
L L+L +N +SG + + L L+LS+NK +G IP +
Sbjct: 653 --------GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704
Query: 506 GLKEFNVSFNNLSGVVPEN--LRNFPDSAFHPGNSLL 540
L E ++S NNLSG +PE FP + F N L
Sbjct: 705 MLTEIDLSNNNLSGPIPEMGQFETFPPAKFL-NNPGL 740
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 1e-45
Identities = 86/317 (27%), Positives = 134/317 (42%), Gaps = 25/317 (7%)
Query: 84 PTIIGLKMLCNVSVSNNQLMGNI-TDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLL 142
++ L L ++ + N L G I ++ +++LE L L N G IPSG+ + NL +
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495
Query: 143 NISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLD 202
++S+N G P G L L L L N F G+I L S++ +DL+ N F+G++
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Query: 203 LGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFS 262
+ S I+ N + G+ + + + G S
Sbjct: 556 AAMFKQS-------GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608
Query: 263 -LRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPV-GSITS-ATLKKVNLSSN 319
+ S G SM LD+S N L G + I S L +NL N
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSM--MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666
Query: 320 KLSGSLPARVGHCT---IVDLSNNRLSGD----LSRMQNWGNYVEDIHLSSNFLTGMVPN 372
+SGS+P VG I+DLS+N+L G +S + + +I LS+N L+G +P
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL----TMLTEIDLSNNNLSGPIP- 721
Query: 373 QTSQFLRLTSFKVSNNS 389
+ QF K NN
Sbjct: 722 EMGQFETFPPAKFLNNP 738
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 200 bits (511), Expect = 7e-55
Identities = 91/466 (19%), Positives = 154/466 (33%), Gaps = 48/466 (10%)
Query: 96 SVSNNQLMGNI-TDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFP 154
++++NQL + L LD+ N L P L L +LN+ N
Sbjct: 31 NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD 90
Query: 155 SGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSI 214
F L L L +N + + +++ +DLS+N S + ++
Sbjct: 91 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL---ENL 147
Query: 215 QYLNISENSLVGELFPHDGMPYFDN--LEVFDASNNHLVGAIP-SFNFVFSLRILRLGSN 271
Q L +S N + + + F N L+ + S+N + P F+ + L L L +
Sbjct: 148 QELLLSNNKIQA--LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205
Query: 272 QLSGSLPVALLQESSMM-LSELDLSLNQLEGP----VGSITSATLKKVNLSSNKLSGSLP 326
QL SL L E + + L LS +QL + L ++LS N L+
Sbjct: 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265
Query: 327 ARVGHCT---IVDLSNNRLSG-------DLSRMQ--NWGNYVEDIHLSSNFLTGMVPNQT 374
L N + L ++ N +S L +
Sbjct: 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325
Query: 375 SQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPS----FFTSTKLTD 430
L + +N + G + LK + LS + + L + + L
Sbjct: 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385
Query: 431 LNLSGNNFSGPLPLQEIQNNPSTGSTQNL-SLTSLDLAYNSLSGRLLPG-ISKFHNLVYL 488
LNL+ N S + L L LDL N + L N+ +
Sbjct: 386 LNLTKNKISKIES----------DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435
Query: 489 NLSNNKFEGSIPD---GLPNGLKEFNVSFNNLSGV--VPENLRNFP 529
LS NK+ + +P+ L+ + L V P +
Sbjct: 436 YLSYNKYLQLTRNSFALVPS-LQRLMLRRVALKNVDSSPSPFQPLR 480
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 5e-48
Identities = 86/429 (20%), Positives = 162/429 (37%), Gaps = 41/429 (9%)
Query: 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRF 173
S E D SH +P + N+ +LN++ N + F +L LD+ N
Sbjct: 5 SHEVADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 174 GGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDG 233
L +L + ++L +N+ S D +++ L++ NS+ ++
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC---TNLTELHLMSNSIQK--IKNNP 116
Query: 234 MPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSEL 292
NL D S+N L + + +L+ L L +N++ L ++ L +L
Sbjct: 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176
Query: 293 DLSLNQLEG-PVGSITSAT-LKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQ 350
+LS NQ++ G + L + L++ +L SL ++ +L+N +
Sbjct: 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL----ELANTSI-------- 224
Query: 351 NWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKV---SNNSLEGDLPAVLGTYPELKVI 407
++ LS++ L+ N T L+ T+ + S N+L P+L+
Sbjct: 225 ------RNLSLSNSQLST-TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYF 277
Query: 408 DLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNL-SLTSLDL 466
L N++ S + LNL + + L + S Q L L L++
Sbjct: 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD-FSFQWLKCLEHLNM 336
Query: 467 AYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGL------PNGLKEFNVSFNNLSGV 520
N + G + NL YL+LSN+ + L N++ N +S +
Sbjct: 337 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396
Query: 521 VPENLRNFP 529
+
Sbjct: 397 ESDAFSWLG 405
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 8e-43
Identities = 85/421 (20%), Positives = 147/421 (34%), Gaps = 53/421 (12%)
Query: 98 SNNQLMGNITD-IGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTF--- 153
S N L D + LE+ L +N L + L N+ LN+ + + +
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315
Query: 154 ------PSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFS-GSLDLGLG 206
F L L++L++ N G ++ + L ++ ++ LSN+ S +L
Sbjct: 316 SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375
Query: 207 DSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVF--SLR 264
S S + LN+++N + D + +LEV D N + + + ++
Sbjct: 376 VSLAHSPLHILNLTKNKISK--IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF 433
Query: 265 ILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSAT-----LKKVNLSSN 319
+ L N+ + S L L L L+ V S S L ++LS+N
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPS--LQRLMLRRVALKN-VDSSPSPFQPLRNLTILDLSNN 490
Query: 320 KLSGSLPARVGHCT---IVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQ 376
++ + I+DL +N L+ L + G
Sbjct: 491 NIANINDDMLEGLEKLEILDLQHNNLA----------------RLWKHANPGGPIYFLKG 534
Query: 377 FLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGN 436
L + +N + V ELK+IDL LN+LN F L LNL N
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594
Query: 437 NFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFE 496
+ +LT LD+ +N I+ F N ++N ++
Sbjct: 595 LITSV--------EKKVFGPAFRNLTELDMRFNPFDC-TCESIAWFVN--WINETHTNIP 643
Query: 497 G 497
Sbjct: 644 E 644
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 2e-13
Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 10/133 (7%)
Query: 80 NFSFPTIIGLKMLCNVSVSNNQL---------MGNITDIGSIQSLEFLDLSHNLFHGLIP 130
N + + GL+ L + + +N L G I + + L L+L N F +
Sbjct: 494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553
Query: 131 SGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGG-DIMHLLSQLGSVVH 189
L L ++++ N+ S F LK L+L+ N + ++
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 613
Query: 190 VDLSNNQFSGSLD 202
+D+ N F + +
Sbjct: 614 LDMRFNPFDCTCE 626
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 16/108 (14%)
Query: 425 STKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHN 484
+ + S L ++ P T ++T L+L +N L +++
Sbjct: 3 TVSHEVADCSHLK------LTQV---PDDLPT---NITVLNLTHNQLRRLPAANFTRYSQ 50
Query: 485 LVYLNLSNNKFEGSIPD---GLPNGLKEFNVSFNNLSGVVPENLRNFP 529
L L++ N P+ LP LK N+ N LS + +
Sbjct: 51 LTSLDVGFNTISKLEPELCQKLPM-LKVLNLQHNELSQLSDKTFAFCT 97
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 196 bits (501), Expect = 6e-54
Identities = 92/456 (20%), Positives = 163/456 (35%), Gaps = 38/456 (8%)
Query: 85 TIIGLKMLCNVSVSNNQLMGNI--TDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNL--- 139
I LK L ++V++N + ++ +LE LDLS N + + + L +
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178
Query: 140 -MLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIM-HLLSQLGSVVHVDLSNNQF 197
+ L++S N P F + +L L LR N ++M + L + L +F
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237
Query: 198 SGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMP----YFDNLEVFDASNNHLVGA 253
+L D S + + L I E L + D + N+ F + +
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER- 296
Query: 254 IPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKK 313
+ F++ F + L L + + + L L L + N+ + +L+
Sbjct: 297 VKDFSYNFGWQHLELVNCKFGQFPTLKLKS-----LKRLTFTSNKGGNAFSEVDLPSLEF 351
Query: 314 VNLSSNKLS--GSLPARVGHCT---IVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTG 368
++LS N LS G T +DLS N + S +E + + L
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ-LEHLDFQHSNLKQ 410
Query: 369 MVPNQTSQFLR-LTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTS-T 426
M LR L +S+ + L+V+ ++ N LP FT
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470
Query: 427 KLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLV 486
LT L+LS L + S L L++++N+ ++L
Sbjct: 471 NLTFLDLSQCQLEQ-LSPTAFNSLSS--------LQVLNMSHNNFFSLDTFPYKCLNSLQ 521
Query: 487 YLNLSNNKFEGSIPD---GLPNGLKEFNVSFNNLSG 519
L+ S N S P+ L N++ N+ +
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 2e-49
Identities = 71/460 (15%), Positives = 139/460 (30%), Gaps = 33/460 (7%)
Query: 88 GLKMLCNVSVSNNQLMGNITD-IGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISS 146
L + +S ++ S+ L L L+ N L L +L L
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 147 NSFEGTFPSGFGGLGKLKYLDLRANRF-GGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGL 205
+ G L LK L++ N + S L ++ H+DLS+N+ L
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
Query: 206 GD-SSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP--SFNFVFS 262
L++S N + G L NN + +
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNF---IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAG 226
Query: 263 LRILRLGSNQLSGSLPVALLQESSMM----LSELDLSLNQLEGPVGSITSA-----TLKK 313
L + RL + + +S++ L+ + L L+ + I +
Sbjct: 227 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286
Query: 314 VNLSSNKLSGSLP-ARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPN 372
+L S + + ++L N + + + V
Sbjct: 287 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346
Query: 373 QTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLN 432
+ +FL L+ + S +G LK +DLS N + + +F +L L+
Sbjct: 347 PSLEFLDLSR---NGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD 402
Query: 433 LSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSN 492
+N + + L LD+++ + +L L ++
Sbjct: 403 FQHSNLKQMSEFSVFLSLRN--------LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454
Query: 493 NKFEGSIPDGLPNG---LKEFNVSFNNLSGVVPENLRNFP 529
N F+ + + L ++S L + P +
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 2e-47
Identities = 81/454 (17%), Positives = 155/454 (34%), Gaps = 50/454 (11%)
Query: 98 SNNQLMGNI-TDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSG 156
S N L S L+ LDLS + SL +L L ++ N +
Sbjct: 36 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95
Query: 157 FGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDS-SFISSIQ 215
F GL L+ L + L ++ +++++N L + S +++++
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS---FKLPEYFSNLTNLE 152
Query: 216 YLNISENSLVGELFPHDGMPYFDNLEVF----DASNNHLVGAIPSFNFVFSLRILRLGSN 271
+L++S N + + + + D S N + P L L L +N
Sbjct: 153 HLDLSSNKIQS--IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210
Query: 272 QLSGSLPVALLQESSMMLSELDLSLNQLEGPV----------GSITSATLKKVNLSSNKL 321
S ++ +Q + L L L + + + T+++ L+
Sbjct: 211 FDSLNVMKTCIQGLA-GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269
Query: 322 SGSLPARVGHC----TIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQF 377
+ +C + L + + N+G + + L + +
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG--WQHLELVNCKFGQFPTLKLKSL 327
Query: 378 LRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLN--GFLLPSFFTSTKLTDLNLSG 435
RLT S +G P L+ +DLS N L+ G S F +T L L+LS
Sbjct: 328 KRLT-----FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382
Query: 436 NNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGI-SKFHNLVYLNLSNNK 494
N S+ L LD +++L + NL+YL++S+
Sbjct: 383 NGVIT----------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 495 FEGSIPD---GLPNGLKEFNVSFNNLSGVVPENL 525
+ GL + L+ ++ N+ ++
Sbjct: 433 TRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDI 465
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 3e-16
Identities = 33/150 (22%), Positives = 57/150 (38%), Gaps = 4/150 (2%)
Query: 85 TIIGLKMLCNVSVSNNQLMGNI--TDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLL 142
GL L + ++ N N +++L FLDLS L P+ SL +L +L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 143 NISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQL-GSVVHVDLSNNQFSGSL 201
N+S N+F + L L+ LD N L S+ ++L+ N F+ +
Sbjct: 500 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 559
Query: 202 DLGLGDSSFISSIQYLNISENSLVGELFPH 231
+ +I + L + +
Sbjct: 560 EH-QSFLQWIKDQRQLLVEVERMECATPSD 588
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 187 bits (476), Expect = 2e-50
Identities = 75/486 (15%), Positives = 157/486 (32%), Gaps = 55/486 (11%)
Query: 72 LNDMGLVGNFSFPTIIGLKMLC----NVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHG 127
L + + +I + + +N + + + L + ++ F
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVA 220
Query: 128 LIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSV 187
+N T + L L +++ + L L +
Sbjct: 221 ENICEAWENENSEYAQQY-----KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275
Query: 188 VHVDLSNNQFSGSLDL-----GLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEV 242
++++ N+ L L D+ IQ + I N+L + L +
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGM 334
Query: 243 FDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG- 301
+ N L G +P+F L L L NQ++ +P + + L + N+L+
Sbjct: 335 LECLYNQLEGKLPAFGSEIKLASLNLAYNQITE-IPANFCGFTEQ-VENLSFAHNKLKYI 392
Query: 302 -PVGSITSAT-LKKVNLSSNKLSG-------SLPARVGHCT---IVDLSNNRLSGDLSRM 349
+ S + + ++ S N++ L ++LSNN++S +
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452
Query: 350 QNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDL 409
+ G+ + I+L N LT + N D L IDL
Sbjct: 453 FSTGSPLSSINLMGNMLTEIPKNSLK-----------------DENENFKNTYLLTSIDL 495
Query: 410 SLNHLNGFLLPSFFTS-TKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTS-LDLA 467
N L T+ L ++LS N+FS P + N+ + + + + D
Sbjct: 496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FP-TQPLNSSTL---KGFGIRNQRDAQ 550
Query: 468 YNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRN 527
N GI+ +L L + +N + + + + ++ N + +
Sbjct: 551 GNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKITPNISVLDIKDNPNISIDLSYVCP 609
Query: 528 FPDSAF 533
+ ++
Sbjct: 610 YIEAGM 615
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 1e-46
Identities = 65/479 (13%), Positives = 145/479 (30%), Gaps = 77/479 (16%)
Query: 98 SNNQLMGNITD-IGSIQSLEFLDLSHNLFHG----LIPSGIVSLKNLMLLNISSNSFEGT 152
G + D IG + LE L L + P GI + + ++ T
Sbjct: 89 EGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKT 148
Query: 153 FPSGFGGLG--KLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSF 210
F L + ++ I + +N + + +
Sbjct: 149 FVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMR--- 204
Query: 211 ISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLG 269
++ ++ + + V E + E ++ ++ + L + +
Sbjct: 205 LTKLRQFYMGNSPFVAE-------NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257
Query: 270 SNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSAT----------LKKVNLSSN 319
+ LP L + ++++ N+ ++ + + N
Sbjct: 258 NCPNLTKLPTFLKALPE--MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315
Query: 320 KL-SGSLPARVGHCT---IVDLSNNRLSG---DLSRMQNWGNYVEDIHLSSNFLTGMVPN 372
L + + + +++ N+L G + ++L+ N +T +P
Sbjct: 316 NLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIK----LASLNLAYNQITE-IPA 370
Query: 373 QTSQFLR-LTSFKVSNNSLEGDLPAVLGTY--PELKVIDLSLNHLNGF-------LLPSF 422
F + + ++N L+ +P + + ID S N + L P+
Sbjct: 371 NFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429
Query: 423 FTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSG-------RL 475
F ++ +NLS N S P + L+S++L N L+
Sbjct: 430 FKGINVSSINLSNNQISK-FPKELFSTGS--------PLSSINLMGNMLTEIPKNSLKDE 480
Query: 476 LPGISKFHNLVYLNLSNNKFEGSIPDGLPNG----LKEFNVSFNNLSGVVPE--NLRNF 528
+ L ++L NK + D L ++S+N+ S + N
Sbjct: 481 NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTL 538
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 1e-41
Identities = 64/460 (13%), Positives = 141/460 (30%), Gaps = 90/460 (19%)
Query: 109 IGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEG----TFPSGFGGLGKLK 164
+ S + L L G +P I L L +L + S+ + P G +
Sbjct: 77 LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136
Query: 165 YLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSL 224
+ + DL + + I + + + +
Sbjct: 137 QKQKMRMHYQKTF---VDYDPREDFSDLIKDCINSDPQQK-----SIKKSSRITLKDTQI 188
Query: 225 VGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQE 284
+N++ + + LR +G++ +
Sbjct: 189 -------------------GQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWEN 229
Query: 285 SSM----MLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCT---IVDL 337
+ DL + L+ L V + + LP + ++++
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKD---------LTDVEVYNCPNLTKLPTFLKALPEMQLINV 280
Query: 338 SNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSL-EGDLPA 396
+ NR +W + + + N+L +
Sbjct: 281 ACNRGISGEQLKDDWQALADAPVGEK----------------IQIIYIGYNNLKTFPVET 324
Query: 397 VLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLP--------LQEIQ 448
L +L +++ N L G LP+F + KL LNL+ N + ++ +
Sbjct: 325 SLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLS 383
Query: 449 --NN-----PSTGSTQNL-SLTSLDLAYNSLSG-------RLLPGISKFHNLVYLNLSNN 493
+N P+ +++ ++++D +YN + L P K N+ +NLSNN
Sbjct: 384 FAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443
Query: 494 KFEGSIPD--GLPNGLKEFNVSFNNLSGVVPENLRNFPDS 531
+ + + L N+ N L+ + +L++ ++
Sbjct: 444 QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-09
Identities = 18/150 (12%), Positives = 46/150 (30%), Gaps = 10/150 (6%)
Query: 382 SFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGP 441
+F + L + + + L +G + + T+L L L +
Sbjct: 61 NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120
Query: 442 LPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISK--FHNLVYLNLSNNKFEGSI 499
L + + N+S + + F +L+ ++++ + SI
Sbjct: 121 ERLFGPKG-----ISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175
Query: 500 PD--GLPNGLKEFNVSFNNLSGVVPENLRN 527
+ + NN++ V + +
Sbjct: 176 KKSSRITLKDTQIGQLSNNITF-VSKAVMR 204
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 176 bits (450), Expect = 9e-50
Identities = 83/335 (24%), Positives = 132/335 (39%), Gaps = 48/335 (14%)
Query: 18 QSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITCTN----GYVTSIMLN 73
D +ALLQ+KK + + + SW ++D C R W G+ C V ++ L+
Sbjct: 5 PQDKQALLQIKKDLGNPTT---LSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLS 58
Query: 74 DMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSH-NLFHGLIPSG 132
+ L + P+ + ++ L FL + N G IP
Sbjct: 59 GLNLPKPYPIPS----------------------SLANLPYLNFLYIGGINNLVGPIPPA 96
Query: 133 IVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDL 192
I L L L I+ + G P + L LD N G + +S L ++V +
Sbjct: 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156
Query: 193 SNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVG 252
N+ SG++ G SF + IS N L G++ P NL D S N L G
Sbjct: 157 DGNRISGAIPDSYG--SFSKLFTSMTISRNRLTGKIPPTFAN---LNLAFVDLSRNMLEG 211
Query: 253 AIP-SFNFVFSLRILRLGSNQLSGSLP-VALLQESSMMLSELDLSLNQLEGPV-GSITSA 309
F + + + L N L+ L V L + L+ LDL N++ G + +T
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK----NLNGLDLRNNRIYGTLPQGLTQL 267
Query: 310 T-LKKVNLSSNKLSGSLPA--RVGHCTIVDLSNNR 341
L +N+S N L G +P + + +NN+
Sbjct: 268 KFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 3e-42
Identities = 78/289 (26%), Positives = 122/289 (42%), Gaps = 39/289 (13%)
Query: 271 NQLSGSLPVALLQESSMMLSELDLSLNQLEGP------VGSITSATLKKVNLSS-NKLSG 323
G L Q ++ LDLS L P + ++ L + + N L G
Sbjct: 36 RTWLGVLCDTDTQTYR--VNNLDLSGLNLPKPYPIPSSLANLPY--LNFLYIGGINNLVG 91
Query: 324 SLPARVGHCT---IVDLSNNRLSG----DLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQ 376
+P + T + +++ +SG LS+++ + + S N L+G +P S
Sbjct: 92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT----LVTLDFSYNALSGTLPPSISS 147
Query: 377 FLRLTSFKVSNNSLEGDLPAVLGTYPEL-KVIDLSLNHLNGFLLPSFFTSTKLTDLNLSG 435
L N + G +P G++ +L + +S N L G + P F + L ++LS
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI-PPTFANLNLAFVDLSR 206
Query: 436 NNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKF 495
N G GS +N + LA NSL+ L + NL L+L NN+
Sbjct: 207 NMLEGDAS-------VLFGSDKNT--QKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRI 256
Query: 496 EGSIPDGLPN--GLKEFNVSFNNLSGVVPE--NLRNFPDSAFHPGNSLL 540
G++P GL L NVSFNNL G +P+ NL+ F SA+ N L
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA-NNKCL 304
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 4e-40
Identities = 71/290 (24%), Positives = 117/290 (40%), Gaps = 36/290 (12%)
Query: 244 DASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLP----VALLQESSMMLSELDLS-LN 297
D N +G + + + + L L L P +A L L+ L + +N
Sbjct: 32 DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY----LNFLYIGGIN 87
Query: 298 QLEGPV-GSITSAT-LKKVNLSSNKLSGSLPARVGHCT---IVDLSNNRLSG----DLSR 348
L GP+ +I T L + ++ +SG++P + +D S N LSG +S
Sbjct: 88 NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147
Query: 349 MQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRL-TSFKVSNNSLEGDLPAVLGTYPELKVI 407
+ N + I N ++G +P+ F +L TS +S N L G +P L +
Sbjct: 148 LPN----LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFV 202
Query: 408 DLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLA 467
DLS N L G F + ++L+ N+ + L ++ + + L LDL
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKN--------LNGLDLR 252
Query: 468 YNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLP-NGLKEFNVSFNN 516
N + G L G+++ L LN+S N G IP G + N
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 2e-39
Identities = 53/254 (20%), Positives = 104/254 (40%), Gaps = 28/254 (11%)
Query: 290 SELDLSLNQLEGPV-GSITSAT-LKKVNLSSNKLSGS--LPARVGHCT---IVDLSN-NR 341
D G + + T + ++LS L +P+ + + + + N
Sbjct: 29 PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88
Query: 342 LSG----DLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAV 397
L G ++++ + ++++ ++G +P+ SQ L + S N+L G LP
Sbjct: 89 LVGPIPPAIAKLTQ----LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144
Query: 398 LGTYPELKVIDLSLNHLNGFLLPSFFTSTKL-TDLNLSGNNFSGPLPLQEIQNNPSTGST 456
+ + P L I N ++G + S+ + +KL T + +S N +G +P P+
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP-------PTFA-- 195
Query: 457 QNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPD-GLPNGLKEFNVSFN 515
NL+L +DL+ N L G N ++L+ N + GL L ++ N
Sbjct: 196 -NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN 254
Query: 516 NLSGVVPENLRNFP 529
+ G +P+ L
Sbjct: 255 RIYGTLPQGLTQLK 268
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 2e-39
Identities = 75/317 (23%), Positives = 116/317 (36%), Gaps = 47/317 (14%)
Query: 191 DLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFD-ASNNH 249
D N + G L + + L++S +L + L N+
Sbjct: 32 DCCNRTWLGVLCDTDTQTY---RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88
Query: 250 LVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPV----G 304
LVG IP + + L L + +SG++P L Q + L LD S N L G +
Sbjct: 89 LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT--LVTLDFSYNALSGTLPPSIS 146
Query: 305 SITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSN 364
S+ + L + N++SG++P G + + +S N
Sbjct: 147 SLPN--LVGITFDGNRISGAIPDSYGSFS--------------------KLFTSMTISRN 184
Query: 365 FLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFT 424
LTG +P + L L +S N LEGD + G+ + I L+ N L L
Sbjct: 185 RLTGKIPPTFAN-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGL 242
Query: 425 STKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNL-SLTSLDLAYNSLSGRLLPGISKFH 483
S L L+L N G LP L L SL++++N+L G + P
Sbjct: 243 SKNLNGLDLRNNRIYGTLP----------QGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQ 291
Query: 484 NLVYLNLSNNKFEGSIP 500
+NNK P
Sbjct: 292 RFDVSAYANNKCLCGSP 308
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 178 bits (453), Expect = 1e-47
Identities = 83/450 (18%), Positives = 146/450 (32%), Gaps = 33/450 (7%)
Query: 98 SNNQLMG-NITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSG 156
S N L T + +L FLDL+ + + S L L +++N +
Sbjct: 41 SFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA 100
Query: 157 FGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQY 216
G LK+L L ++ + L +N S S+ L G + ++
Sbjct: 101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGFPT--EKLKV 157
Query: 217 LNISENSLVGELFPHDGMPYFDNLEV--FDASNNHLVGAIPSFNFVFSLRILRLGSNQLS 274
L+ N++ + M + + N + G P + L G Q
Sbjct: 158 LDFQNNAIHY--LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL 215
Query: 275 GSLPVALLQESSMMLSELDLSLNQL----EGPVGSITSATLKKVNLSSNKLSGSLPARVG 330
+ L + L + +++ +NL +
Sbjct: 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH 275
Query: 331 HCT---IVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSN 387
+ +DL+ LS S + ++ + LS+N + S F LT +
Sbjct: 276 CFSGLQELDLTATHLSELPSGLVGLST-LKKLVLSANKFENLCQISASNFPSLTHLSIKG 334
Query: 388 NSLEGDL-PAVLGTYPELKVIDLSLNHLN--GFLLPSFFTSTKLTDLNLSGNNFSGPLPL 444
N+ +L L L+ +DLS + + + L LNLS N L
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKT 393
Query: 445 QEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGI-SKFHNLVYLNLSNNKFEGSIPD-- 501
+ + P L LDLA+ L + H L LNLS++ + S
Sbjct: 394 EAFKECP--------QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445
Query: 502 -GLPNGLKEFNVSFNNLSGVVPENLRNFPD 530
GLP L+ N+ N+ + +
Sbjct: 446 DGLPA-LQHLNLQGNHFPKGNIQKTNSLQT 474
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 3e-45
Identities = 71/460 (15%), Positives = 142/460 (30%), Gaps = 32/460 (6%)
Query: 88 GLKMLCNVSVSNNQLMGNITD-IGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISS 146
L L + ++ Q+ D S L+ L L+ N + + + K L L
Sbjct: 55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ 114
Query: 147 NSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLG 206
L+ L L +N + + +D NN +
Sbjct: 115 TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174
Query: 207 DSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP---SFNFVFSL 263
+++ LN++ N + G G + + + I + + SL
Sbjct: 175 SLQQATNL-SLNLNGNDIAGI---EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSL 230
Query: 264 RILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG-PVGSITSAT-LKKVNLSSNKL 321
+ P M + ++L + + + L++++L++ L
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290
Query: 322 SGSLPARVGHCT---IVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFL 378
S LP+ + + + LS N+ + + + + N + + L
Sbjct: 291 S-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349
Query: 379 R-LTSFKVSNNSLE--GDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSG 435
L +S++ +E L L+ ++LS N +F +L L+L+
Sbjct: 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409
Query: 436 NNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKF 495
QN L L+L+++ L L +LNL N F
Sbjct: 410 TRLKVKDAQSPFQNLH--------LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461
Query: 496 EGSIPD------GLPNGLKEFNVSFNNLSGVVPENLRNFP 529
L L+ +SF +LS + +
Sbjct: 462 PKGNIQKTNSLQTLGR-LEILVLSFCDLSSIDQHAFTSLK 500
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 169 bits (429), Expect = 2e-44
Identities = 84/464 (18%), Positives = 146/464 (31%), Gaps = 60/464 (12%)
Query: 95 VSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFP 154
+ N L + + S E L+ S N+ + + L NL L+++
Sbjct: 17 YNCENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74
Query: 155 SGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSI 214
F +L L L AN LS ++ H+ S + L + ++
Sbjct: 75 DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN---QKTL 131
Query: 215 QYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLS 274
+ L + N + P E L++L +N +
Sbjct: 132 ESLYLGSNHISSIKLPK-----GFPTE--------------------KLKVLDFQNNAIH 166
Query: 275 GSLPVALLQESSMMLSELDLSLNQLEG-PVGSITSATLKKVNLSSNKLSGSLPARVGHCT 333
+ L+L+ N + G G+ SA + +N + + + + T
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST 226
Query: 334 IVDLSNNRLSG----DLSRMQNWG---NYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVS 386
I L D+S G VE I+L ++ + N F L ++
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286
Query: 387 NNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQE 446
L +LP+ L LK + LS N S LT L++ GN L
Sbjct: 287 ATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345
Query: 447 IQNNPS-----------------TGSTQNL-SLTSLDLAYNSLSGRLLPGISKFHNLVYL 488
++N + +NL L SL+L+YN + L L
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405
Query: 489 NLSNNKFEGSIPDGLPNG---LKEFNVSFNNLSGVVPENLRNFP 529
+L+ + + LK N+S + L + P
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 2e-34
Identities = 73/447 (16%), Positives = 143/447 (31%), Gaps = 51/447 (11%)
Query: 98 SNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIV--SLKNLMLLNISSNSFEGTFPS 155
+ N + G + L+ +I G+ ++++L L E P+
Sbjct: 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246
Query: 156 GFGGLGK--LKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISS 213
F GL + ++ ++L+ + F + + +DL+ S L GL +S+
Sbjct: 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG---LST 302
Query: 214 IQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPS--FNFVFSLRILRLGSN 271
++ L +S N E F +L N + + + +LR L L +
Sbjct: 303 LKKLVLSANKF--ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360
Query: 272 QLSGSLPVALLQESSMMLSELDLSLNQLEG-PVGSITSAT-LKKVNLSSNKLSGSLPARV 329
+ S L + L L+LS N+ + L+ ++L+ +L
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA--- 417
Query: 330 GHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNS 389
+L ++ ++LS + L L + N
Sbjct: 418 -QSPFQNLHL----------------LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460
Query: 390 LEG---DLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQE 446
L T L+++ LS L+ +F + + ++LS N +
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI--- 517
Query: 447 IQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIP-DGLPN 505
+ +L L+LA N +S L + +NL N + +
Sbjct: 518 -------EALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLE 570
Query: 506 GLKEFNVSFNNLSGVV---PENLRNFP 529
KE + + P LR
Sbjct: 571 WYKENMQKLEDTEDTLCENPPLLRGVR 597
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 2e-33
Identities = 64/367 (17%), Positives = 130/367 (35%), Gaps = 26/367 (7%)
Query: 77 LVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSL 136
+ TI L + + + + + + S+E ++L + F + +
Sbjct: 218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF 277
Query: 137 KNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQ 196
L L++++ PSG GL LK L L AN+F S S+ H+ + N
Sbjct: 278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336
Query: 197 FSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP- 255
LG G + +++ L++S + + + + +L+ + S N +
Sbjct: 337 KRLE--LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394
Query: 256 SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG-PVGSITSAT-LKK 313
+F L +L L +L + Q +L L+LS + L+ L+
Sbjct: 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLH-LLKVLNLSHSLLDISSEQLFDGLPALQH 453
Query: 314 VNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQ 373
+NL N + ++ L +E + LS L+ + +
Sbjct: 454 LNLQGNHFPKGNIQKTN--SLQTLGR----------------LEILVLSFCDLSSIDQHA 495
Query: 374 TSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNL 433
+ + +S+N L L + ++L+ NH++ L ++ +NL
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINL 554
Query: 434 SGNNFSG 440
N
Sbjct: 555 RQNPLDC 561
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 2e-15
Identities = 36/197 (18%), Positives = 63/197 (31%), Gaps = 22/197 (11%)
Query: 334 IVDLSNNRLS---GDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSL 390
+ N L+ G L N E + S N L + S+ + LT ++ +
Sbjct: 16 TYNCENLGLNEIPGTLP------NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI 69
Query: 391 EGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNN 450
+ L + L+ N L + L L S + + N
Sbjct: 70 YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQ 128
Query: 451 PSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPN----G 506
+L SL L N +S LP L L+ NN + + +
Sbjct: 129 K--------TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180
Query: 507 LKEFNVSFNNLSGVVPE 523
N++ N+++G+ P
Sbjct: 181 NLSLNLNGNDIAGIEPG 197
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 6e-05
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 85 TIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNI 144
LKM+ +V +S+N+L + + S +L+L+ N ++PS + L +N+
Sbjct: 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINL 554
Query: 145 SSNSFEGT 152
N + T
Sbjct: 555 RQNPLDCT 562
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 1e-44
Identities = 69/449 (15%), Positives = 141/449 (31%), Gaps = 60/449 (13%)
Query: 84 PTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLN 143
I L L + +N+ + + E + + + +LK+L +
Sbjct: 442 KAIQRLTKLQIIYFANSPFTYDNIAV----DWEDANSDYAKQYENEELSWSNLKDLTDVE 497
Query: 144 ISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDL 203
+ + P L +L+ L++ N + S + + +
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLNIACN-----------RGISAAQLKADWTRLADDE-- 544
Query: 204 GLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSL 263
IQ + N+L E + L + D +N + + +F L
Sbjct: 545 -----DTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKL 597
Query: 264 RILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG--PVGSITSAT-LKKVNLSSNK 320
L+L NQ+ +P + + L S N+L+ + + S + V+ S NK
Sbjct: 598 TDLKLDYNQIE-EIPEDFCAFTD-QVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK 655
Query: 321 LSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRL 380
+ N + LS N + + +
Sbjct: 656 IGSEGRNISCSMDDYKGIN----------------ASTVTLSYNEIQKFPTELFATGSPI 699
Query: 381 TSFKVSNNSLE-------GDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTS-TKLTDLN 432
++ +SNN + L IDL N L T+ L++++
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMD 759
Query: 433 LSGNNFSGPLPLQEIQNNPSTGSTQNLSLTS-LDLAYNSLSGRLLPGISKFHNLVYLNLS 491
+S N FS P + N+ + + D N + + GI+ +L+ L +
Sbjct: 760 VSYNCFSS-FP-TQPLNSS---QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814
Query: 492 NNKFEGSIPDGLPNGLKEFNVSFNNLSGV 520
+N + + L L +++ N +
Sbjct: 815 SNDIR-KVDEKLTPQLYILDIADNPNISI 842
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 165 bits (418), Expect = 3e-42
Identities = 82/589 (13%), Positives = 179/589 (30%), Gaps = 109/589 (18%)
Query: 19 SDFEALLQLKKGIAKDPSGQIIDSWDTKSLSS----DGCPRNWFGITCT----NGYVTSI 70
D++AL + + + + + S + W NG VT +
Sbjct: 269 KDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGL 328
Query: 71 MLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIG-------------------- 110
L G G I L L +S + + G
Sbjct: 329 SLAGFGAKGRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY 387
Query: 111 ------SIQSLEFLDLSHNLFHG------LIPSGIVSLKNLMLLNISSNSFEGTFPSGFG 158
Q L DL + + + +SLK+ + N+++
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI--TFISKAIQ 445
Query: 159 GLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLN 218
L KL+ + + F D + + + + + + +L + + + +
Sbjct: 446 RLTKLQIIYFANSPFTYDNIAVDWED-----ANSDYAKQYENEELSWSN---LKDLTDVE 497
Query: 219 ISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVF----------SLRILRL 268
+ + +L P D + L+ + + N + A ++I +
Sbjct: 498 LYNCPNMTQL-P-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555
Query: 269 GSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSAT-LKKVNLSSNKLSGSLPA 327
G N L P + + + L LD N++ + + + L + L N++ +P
Sbjct: 556 GYNNLE-EFPASASLQKMVKLGLLDCVHNKVRH-LEAFGTNVKLTDLKLDYNQIE-EIPE 612
Query: 328 RVGHCT----IVDLSNNRLSG-----DLSRMQNWGNYVEDIHLSSNFLTGMVPNQTS--- 375
T + S+N+L + + + + S N + N +
Sbjct: 613 DFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYV----MGSVDFSYNKIGSEGRNISCSMD 668
Query: 376 --QFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHL-------NGFLLPSFFTST 426
+ + ++ +S N ++ + T + I LS N + ++ +
Sbjct: 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY 728
Query: 427 KLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLV 486
LT ++L N + L +T L+++D++YN S L
Sbjct: 729 LLTTIDLRFNKLTS-LS-------DDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLK 779
Query: 487 YLNL------SNNKFEGSIPDGLPN--GLKEFNVSFNNLSGVVPENLRN 527
+ N+ P G+ L + + N++ V +
Sbjct: 780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQ 828
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 5e-36
Identities = 53/459 (11%), Positives = 139/459 (30%), Gaps = 44/459 (9%)
Query: 98 SNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGF 157
N + + + +++ + + + L+++ +G P
Sbjct: 284 KNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAI 343
Query: 158 GGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYL 217
G L +LK L + + + + ++ D +
Sbjct: 344 GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDY--DQRLNLS 401
Query: 218 NISENSLVGEL----FPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQL 273
++ ++++ D + + N + + + L+I+ ++
Sbjct: 402 DLLQDAINRNPEMKPIKKDSRISLKDTQ-IGNLTNRITFISKAIQRLTKLQIIYFANSPF 460
Query: 274 SGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCT 333
+ ++ S+ E ++ L V L + LP +
Sbjct: 461 TYDNIAVDWED---ANSDYAKQYENEELSWSNLKD--LTDVELYNCPNMTQLPDFLYDLP 515
Query: 334 ---IVDLSNNRLSGDLSRMQNWGNYVEDI---------HLSSNFLTGMVPNQT-SQFLRL 380
++++ NR +W +D ++ N L + + + ++L
Sbjct: 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKL 575
Query: 381 TSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSG 440
+N + L A GT +L + L N + + ++ L S N
Sbjct: 576 GLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY 633
Query: 441 PLPLQEIQNNPSTGSTQNL-SLTSLDLAYNSLSG-----RLLPGISKFHNLVYLNLSNNK 494
P+ + +++ + S+D +YN + K N + LS N+
Sbjct: 634 I---------PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE 684
Query: 495 FEGSIPDGLPNG--LKEFNVSFNNLSGVVPENLRNFPDS 531
+ + G + +S N ++ + +L+ +
Sbjct: 685 IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 139 bits (351), Expect = 6e-34
Identities = 59/398 (14%), Positives = 127/398 (31%), Gaps = 60/398 (15%)
Query: 84 PTIIGLKMLCNVSVSNNQLMGNIT----------DIGSIQSLEFLDLSHNLFHGLIPS-G 132
+ L L +++++ N+ + D + ++ + +N S
Sbjct: 509 DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568
Query: 133 IVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDL 192
+ + L LL+ N FG KL L L N+ + V +
Sbjct: 569 LQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF 626
Query: 193 SNNQFSGSLDLGLGDSSFISSIQYLNISENSLVG---ELFPHDGMPYFDNLEVFDASNNH 249
S+N+ ++ S + + ++ S N + + N S N
Sbjct: 627 SHNKLKYIPNIFNAKS--VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE 684
Query: 250 LVGAIPS-FNFVFSLRILRLGSNQLSGSLPVALLQESSM------MLSELDLSLNQLEGP 302
+ F + + L +N ++ S+P L+ +L+ +DL N+L
Sbjct: 685 IQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL 743
Query: 303 VGSITSAT---LKKVNLSSNKLSGSLPARVGHCT---IVDLSNNRLSGDLSRMQNWGNYV 356
+ T L +++S N S S P + + + + + R
Sbjct: 744 SDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRD-------------- 788
Query: 357 EDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNG 416
N + P + L ++ +N + + L P+L ++D++ N
Sbjct: 789 ----AEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKLT--PQLYILDIADNPNIS 841
Query: 417 FLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTG 454
+ S + L + Q+I+ + G
Sbjct: 842 IDVTSVCPYIEAGMYVLLYDK------TQDIRGCDALG 873
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 5e-43
Identities = 91/459 (19%), Positives = 156/459 (33%), Gaps = 50/459 (10%)
Query: 85 TIIGLKMLCNVSVSNNQLMGNITD--IGSIQSLEFLDLSHNLFHGLIPSGIVSLKNL--- 139
I L L ++V++N + ++ +L +DLS+N + + + L+
Sbjct: 123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182
Query: 140 -MLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIM-HLLSQLGSVVHVDLSNNQF 197
+ L++S N + F G+ KL L LR N +IM L L + L +F
Sbjct: 183 NLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241
Query: 198 SGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFD---NLEVFDASNNHLVGAI 254
+L + + S + + + I E L D + F N+ + + +
Sbjct: 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-L 300
Query: 255 PSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKV 314
F + L + QL + L L L L++N+ + +L +
Sbjct: 301 EDVPKHFKWQSLSIIRCQLKQFPTLDLPF-----LKSLTLTMNKGSISFKKVALPSLSYL 355
Query: 315 NLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQT 374
+LS N LS G C+ DL N L + LS N M
Sbjct: 356 DLSRNALSF-----SGCCSYSDLGTNSL--------------RHLDLSFNGAIIM-SANF 395
Query: 375 SQFLRLTSFKVSNNSLEGDLPA-VLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNL 433
L +++L+ + +L +D+S + F T L L +
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455
Query: 434 SGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGI-SKFHNLVYLNLSN 492
+GN+F N + LT LDL+ L + G+ H L LN+S+
Sbjct: 456 AGNSFKDNTLSNVFANTTN--------LTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMSH 506
Query: 493 NKFEGSIPDGLPN--GLKEFNVSFNNLSGVVPENLRNFP 529
N L + SFN +
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 6e-39
Identities = 70/450 (15%), Positives = 139/450 (30%), Gaps = 68/450 (15%)
Query: 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRF 173
S + +DLS N L + L L++S E + GL L L L N
Sbjct: 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92
Query: 174 GGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDG 233
S L S+ ++ + + +G + +++ LN++ N + P
Sbjct: 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ---LITLKKLNVAHNFIHSCKLP--- 146
Query: 234 MPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVAL--LQESSMMLSE 291
YF NL +L + L N + L L+E+ +
Sbjct: 147 -AYFSNLT--------------------NLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185
Query: 292 LDLSLNQLEG-PVGSITSATLKKVNLSSNKLSGSLPARVG----HCTIVDLSNNRLSG-- 344
LD+SLN ++ + L ++ L N S ++ + L
Sbjct: 186 LDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245
Query: 345 -----DLSRMQNWGN-YVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVL 398
+ S M+ + +++ L+ + +++ ++ S++ +
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED--V 303
Query: 399 GTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQE--------IQNN 450
+ + + + + L F L L L+ N S + N
Sbjct: 304 PKHFKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN 360
Query: 451 P----STGSTQNL---SLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIP--- 500
S +L SL LDL++N + L +L+ ++ +
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSA 419
Query: 501 -DGLPNGLKEFNVSFNNLSGVVPENLRNFP 529
L L ++S+ N
Sbjct: 420 FLSLEK-LLYLDISYTNTKIDFDGIFLGLT 448
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 1e-37
Identities = 77/456 (16%), Positives = 146/456 (32%), Gaps = 55/456 (12%)
Query: 98 SNNQLMG-NITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSG 156
S N L + L++LDLS + L +L L ++ N + P
Sbjct: 40 SFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS 99
Query: 157 FGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDS-SFISSIQ 215
F GL L+ L + + QL ++ +++++N L S ++++
Sbjct: 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS---CKLPAYFSNLTNLV 156
Query: 216 YLNISENSLVG----ELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSN 271
++++S N + +L P D S N + L L L N
Sbjct: 157 HVDLSYNYIQTITVNDLQFLRENPQ--VNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN 214
Query: 272 QLSGSLPVALLQESSMMLSELDLSLNQL----------EGPVGSITSATLKKVNLSSNKL 321
S ++ LQ + L L L + + + T+ + L+
Sbjct: 215 FNSSNIMKTCLQNLA-GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND 273
Query: 322 SGSLPARVGHCT---IVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFL 378
+ + L+ + ++ + + + L T
Sbjct: 274 FSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKH--FKWQSLSIIRCQLKQ---FPTLDLP 328
Query: 379 RLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSF--FTSTKLTDLNLSGN 436
L S ++ N P L +DLS N L+ S+ + L L+LS N
Sbjct: 329 FLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386
Query: 437 NFSGPLPLQEIQNNPSTGSTQNL-SLTSLDLAYNSLSGRLLPGISKFH---NLVYLNLSN 492
+ + L L LD +++L + S F L+YL++S
Sbjct: 387 GAIIM-----------SANFMGLEELQHLDFQHSTLKR--VTEFSAFLSLEKLLYLDISY 433
Query: 493 NKFEGSIPD---GLPNGLKEFNVSFNNLSGVVPENL 525
+ GL + L ++ N+ N+
Sbjct: 434 TNTKIDFDGIFLGLTS-LNTLKMAGNSFKDNTLSNV 468
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 7e-31
Identities = 65/381 (17%), Positives = 105/381 (27%), Gaps = 50/381 (13%)
Query: 98 SNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVS-LKNLMLLNISSNSFEGTF--- 153
S N + L L L N I + L L + + F+
Sbjct: 189 SLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248
Query: 154 ---PSGFGGLGKLKY--LDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDS 208
PS GL + L D + L +V + L+ L D
Sbjct: 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-----LEDV 303
Query: 209 SFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRL 268
Q L+I L + FP +P L+ + N + SL L L
Sbjct: 304 PKHFKWQSLSIIRCQL--KQFPTLDLP---FLKSLTLTMNKGSI-SFKKVALPSLSYLDL 357
Query: 269 GSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSAT-LKKVNLSSNKLSGSLPA 327
N LS S + + L LDLS N + L+ ++ + L
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF 417
Query: 328 RVGHC----TIVDLSNNRLSG---------------DLSRMQNWGNYVEDI--------- 359
+D+S ++ N + ++
Sbjct: 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477
Query: 360 -HLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFL 418
LS L + RL +S+N+L + L +D S N +
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537
Query: 419 LPSFFTSTKLTDLNLSGNNFS 439
L NL+ N+ +
Sbjct: 538 GILQHFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 9e-16
Identities = 40/206 (19%), Positives = 69/206 (33%), Gaps = 25/206 (12%)
Query: 333 TIVDLSNNRLS---GDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNS 389
+ +LS D+ ++I LS N L + S F L +S
Sbjct: 14 ITYQCMDQKLSKVPDDIPS------STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE 67
Query: 390 LEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQN 449
+E L + L+ N + F SF T L +L + L I
Sbjct: 68 IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQ 126
Query: 450 NPSTGSTQNLSLTSLDLAYNSLSGRLLPG-ISKFHNLVYLNLSNNKFEGSIPD------G 502
+L L++A+N + LP S NLV+++LS N + +
Sbjct: 127 LI--------TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178
Query: 503 LPNGLKEFNVSFNNLSGVVPENLRNF 528
P ++S N + + + +
Sbjct: 179 NPQVNLSLDMSLNPIDFIQDQAFQGI 204
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 1e-15
Identities = 33/150 (22%), Positives = 58/150 (38%), Gaps = 5/150 (3%)
Query: 77 LVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDI-GSIQSLEFLDLSHNLFHGLIPSGIVS 135
L F + L+ L + +S + I + SL L ++ N F S + +
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470
Query: 136 -LKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSN 194
NL L++S E F L +L+ L++ N +QL S+ +D S
Sbjct: 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530
Query: 195 NQFSGSLDLGLGDSSFISSIQYLNISENSL 224
N+ F S+ + N++ NS+
Sbjct: 531 NRIET---SKGILQHFPKSLAFFNLTNNSV 557
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 2e-13
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 2/116 (1%)
Query: 85 TIIGLKMLCNVSVSNNQLMGNITD--IGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLL 142
+GL L + ++ N N + +L FLDLS + +L L LL
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502
Query: 143 NISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFS 198
N+S N+ S + L L LD NR L S+ +L+NN +
Sbjct: 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 8e-39
Identities = 82/465 (17%), Positives = 169/465 (36%), Gaps = 56/465 (12%)
Query: 92 LCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEG 151
L + +++ + + I ++ L + L + L +
Sbjct: 3 LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS 60
Query: 152 TFPSGFGGLGKLKYLDLRANRFGGDIMHL--LSQLGSVVHVDLSNNQFSGSLDLGLGDSS 209
G L L ++ N+ + + L L +V + ++NNQ + L
Sbjct: 61 --IDGVEYLNNLTQINFSNNQ----LTDITPLKNLTKLVDILMNNNQIADITPLA----- 109
Query: 210 FISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLG 269
++++ L + N + D + NL + S+N + I + + + SL+ L
Sbjct: 110 NLTNLTGLTLFNNQITD----IDPLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSF- 163
Query: 270 SNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARV 329
NQ++ P+A L L LD+S N++ L+ + ++N++S P +
Sbjct: 164 GNQVTDLKPLANLTT----LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--L 217
Query: 330 GHCT---IVDLSNNRLSG--DLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFK 384
G T + L+ N+L L+ + N + D+ L++N ++ + P S +LT K
Sbjct: 218 GILTNLDELSLNGNQLKDIGTLASLTN----LTDLDLANNQISNLAP--LSGLTKLTELK 271
Query: 385 VSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPL 444
+ N + ++ L L ++L+ N L + LT L L NN S P+
Sbjct: 272 LGANQIS-NISP-LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPV 327
Query: 445 QEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLP 504
+ L L N +S + ++ N+ +L+ +N+ P
Sbjct: 328 SSLTK-----------LQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANL 374
Query: 505 NGLKEFNVSFNNLSGVVPENLRNFP-DSAFHPGNSLLTFPNSPSQ 548
+ + ++ + N + L P + S
Sbjct: 375 TRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISD 419
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 5e-32
Identities = 80/427 (18%), Positives = 164/427 (38%), Gaps = 55/427 (12%)
Query: 82 SFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLML 141
+ L L ++ ++NNQ+ +IT + ++ +L L L +N + P + +L NL
Sbjct: 82 DITPLKNLTKLVDILMNNNQIA-DITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNR 138
Query: 142 LNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSL 201
L +SSN+ S GL L+ L L+ L ++ +D+S+N+ S
Sbjct: 139 LELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKP---LANLTTLERLDISSNKVSD-- 191
Query: 202 DLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVF 261
+ + +++++ L + N + + NL+ + N L I + +
Sbjct: 192 ---ISVLAKLTNLESLIATNNQISDI----TPLGILTNLDELSLNGNQLKD-IGTLASLT 243
Query: 262 SLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG--PVGSITSATLKKVNLSSN 319
+L L L +NQ+S P++ L + L+EL L NQ+ P+ +T+ L + L+ N
Sbjct: 244 NLTDLDLANNQISNLAPLSGLTK----LTELKLGANQISNISPLAGLTA--LTNLELNEN 297
Query: 320 KLSGSLPARVGHCT---IVDLSNNRLSG--DLSRMQNWGNYVEDIHLSSNFLTGMVPNQT 374
+L P + + + L N +S +S + ++ + +N ++ +
Sbjct: 298 QLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTK----LQRLFFYNNKVSD--VSSL 349
Query: 375 SQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLS 434
+ + +N + P L + + L+ + ++ N
Sbjct: 350 ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYK---ANVSIPNTV 404
Query: 435 GNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGIS-KFHNLVYLNLSNN 493
N + I + S T D+ +N S +S F V +
Sbjct: 405 KNVTGALIAPATISDGG--------SYTEPDITWNLPSY--TNEVSYTFSQPVTIGKGTT 454
Query: 494 KFEGSIP 500
F G++
Sbjct: 455 TFSGTVT 461
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 4e-36
Identities = 104/567 (18%), Positives = 189/567 (33%), Gaps = 74/567 (13%)
Query: 88 GLKMLCNVSVSNNQLMGNITD---IGSIQSLEFLDLSHNLFHGLIPSGIVS-LKNLMLLN 143
GL L + + L + ++++L LDLS N L L +L ++
Sbjct: 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154
Query: 144 ISSNSFEGTFPSGFGGLG--KLKYLDLRANRFGGDI-MHLLSQLGSVVHVDLSNNQFSGS 200
SSN L L + L AN + + + ++ L SG+
Sbjct: 155 FSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214
Query: 201 LDLGLGDSSFISSIQYLNISE----NSLVGELFPHDGMPYFD----------NLEVFDAS 246
+F ++I + ++G F + D ++ D S
Sbjct: 215 GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS 274
Query: 247 NNHLVGAIPS--FNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG-PV 303
+ + ++ S F + L++L L N+++ A + L L+LS N L
Sbjct: 275 HGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN--LQVLNLSYNLLGELYS 331
Query: 304 GSITS-ATLKKVNLSSNKLS---GSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDI 359
+ + ++L N ++ + +DL +N L+ + + + + DI
Sbjct: 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIHFIPS----IPDI 386
Query: 360 HLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEG-DLPAVLGTYPELKVIDLSLNHLNGFL 418
LS N L + L +S N LE D+ L P L+++ L+ N +
Sbjct: 387 FLSGNKLVTL----PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS 442
Query: 419 LPSFFTS-TKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLP 477
+ L L L N L L L +N L+ L P
Sbjct: 443 GDQTPSENPSLEQLFLGENMLQLA----WETELCWDVFEGLSHLQVLYLNHNYLN-SLPP 497
Query: 478 GI-SKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPE------------- 523
G+ S L L+L++N+ + LP L+ ++S N L P+
Sbjct: 498 GVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHN 557
Query: 524 ------NLRNFPDSAFHPGNSLLTFPNS------PSQQDVPDLTLRGHG-NHMKPATKIA 570
L F + H ++ P S V +L G + + +
Sbjct: 558 KFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLK 617
Query: 571 LIVGLVCGVTMVALLCMLIYFRALWQR 597
+ +VC VT+ L ++
Sbjct: 618 FSLFIVCTVTLTLFLMTILTVTKFRGF 644
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 5e-36
Identities = 85/486 (17%), Positives = 158/486 (32%), Gaps = 59/486 (12%)
Query: 88 GLKMLCNVSVSNNQLMG-NITDIGSIQSLEFLDLSHNLFHGLIPSGI-VSLKNLMLLNIS 145
L + +S N + + ++ L+ L+L I +L NL +L++
Sbjct: 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81
Query: 146 SNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMH--LLSQLGSVVHVDLSNNQFSGSLDL 203
S+ P F GL L L L ++ L ++ +DLS NQ SL L
Sbjct: 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR-SLYL 140
Query: 204 GLGDSSFISSIQYLNISENSLVG---ELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFV 260
++S++ ++ S N + L F + N L +
Sbjct: 141 H-PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK---TLSFFSLAANSLYSRVSVDWGK 196
Query: 261 F-------SLRILRLGSNQLSGSLPVALLQE----------SSMMLSELDLSLNQLEGPV 303
L IL + N + + + + + ++
Sbjct: 197 CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK--- 253
Query: 304 GSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSS 363
T L+ + + +DLS+ + SR+ ++ ++L+
Sbjct: 254 -DPDQNTFA--GLARSSV-----------RHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299
Query: 364 NFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFF 423
N + + L +S N L + P++ IDL NH+ +F
Sbjct: 300 NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359
Query: 424 TSTKLTDLNLSGNNFS---GPLPLQEI---QNNPSTGSTQNLSLTSLDLAYNSLSG-RLL 476
KL L+L N + + +I N T NL+ + L+ N L +L
Sbjct: 360 FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDIL 419
Query: 477 PGISKFHNLVYLNLSNNKFEGSIPDGLPNG---LKEFNVSFNNLSGVVPENLRNFPDSAF 533
+ + +L L L+ N+F D P+ L++ + N L F
Sbjct: 420 YFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA---WETELCWDVF 476
Query: 534 HPGNSL 539
+ L
Sbjct: 477 EGLSHL 482
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 2e-30
Identities = 102/557 (18%), Positives = 181/557 (32%), Gaps = 109/557 (19%)
Query: 64 NGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMG---NITDIGSIQSLEFLDL 120
NG+ I N + ++I + + + N + S+ LDL
Sbjct: 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL 273
Query: 121 SHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHL 180
SH L +LK+L +LN++ N F GL L+ L+L N G
Sbjct: 274 SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333
Query: 181 LSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNL 240
L V ++DL N + + F+ +Q L++ +N
Sbjct: 334 FYGLPKVAYIDLQKNHIA---IIQDQTFKFLEKLQTLDLRDN------------------ 372
Query: 241 EVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLE 300
A+ + +F+ S+ + L N+L L + ++ + + LS N+LE
Sbjct: 373 ------------ALTTIHFIPSIPDIFLSGNKLVT------LPKINLTANLIHLSENRLE 414
Query: 301 GPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIH 360
NL +P H I+ L+ NR S
Sbjct: 415 --------------NLDILYFLLRVP----HLQILILNQNRFS----------------S 440
Query: 361 LSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGD-----LPAVLGTYPELKVIDLSLNHLN 415
S + P+ L + N L+ V L+V+ L+ N+LN
Sbjct: 441 CSGDQTPSENPS-------LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493
Query: 416 GFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRL 475
F T L L+L+ N + L ++ N L LD++ N L
Sbjct: 494 SLPPGVFSHLTALRGLSLNSNRLTV-LSHNDLPAN----------LEILDISRNQLLA-- 540
Query: 476 LPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFPDSAFHP 535
P F +L L++++NKF + + N P ++ +F
Sbjct: 541 -PNPDVFVSLSVLDITHNKFICECE---LSTFINWLNHTNVTIAGPPADIYCVYPDSFS- 595
Query: 536 GNSLLTFPNSPSQQDVPDLTLRGHGNHMKPATKIALIVGLVCGVTMVALLCMLIYFRALW 595
G SL + ++ +L+ + + L + L+ +T+
Sbjct: 596 GVSLFSLSTEGCDEEEVLKSLKFSLFIV---CTVTLTLFLMTILTVTKFRGFCFICYKTA 652
Query: 596 QRHGRDSFKRDGEQKAF 612
QR + E +
Sbjct: 653 QRLVFKDHPQGTEPDMY 669
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 4e-22
Identities = 71/377 (18%), Positives = 126/377 (33%), Gaps = 82/377 (21%)
Query: 179 HLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFD 238
+ L + + LS N ++ +S +
Sbjct: 18 QVPQVLNTTERLLLSFNYIR-------------------TVTASSFPF----------LE 48
Query: 239 NLEVFDASNNHLVGAIP--SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSL 296
L++ + + + I +F + +LRIL LGS+++ L Q L EL L
Sbjct: 49 QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQ-GLFHLFELRLYF 106
Query: 297 NQLEGPVGSITS----ATLKKVNLSSNKLSGSLPAR-----VGHCTIVDLSNNRLS---- 343
L V L +++LS N++ SL + +D S+N++
Sbjct: 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIR-SLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165
Query: 344 GDLSRMQNWGNYVEDIHLSSNFLTGMVPN------QTSQFLRLTSFKVSNNSLEGDLPAV 397
+L +Q + L++N L V + + L VS N D+
Sbjct: 166 HELEPLQG--KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT-- 221
Query: 398 LGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQ 457
N ++ S + + +N +++ N G
Sbjct: 222 ----------GNFSNAISKSQAFSLILAHHIMGAGFGFHN------IKDPDQNTFAGL-A 264
Query: 458 NLSLTSLDLAYNSLSGRLLPGI-SKFHNLVYLNLSNNKFEGSIPD----GLPNGLKEFNV 512
S+ LDL++ + L + +L LNL+ NK I D GL N L+ N+
Sbjct: 265 RSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDN-LQVLNL 321
Query: 513 SFNNLSGVVPENLRNFP 529
S+N L + N P
Sbjct: 322 SYNLLGELYSSNFYGLP 338
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 32/167 (19%), Positives = 52/167 (31%), Gaps = 24/167 (14%)
Query: 384 KVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLP 443
+++ L V + + LS N++ SF +L L L +
Sbjct: 7 RIAFYRFCN-LTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID 65
Query: 444 LQEIQNNPS---------------TGSTQNL-SLTSLDLAYNSLSGRLLPG--ISKFHNL 485
+ +N P+ + Q L L L L + LS +L L
Sbjct: 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125
Query: 486 VYLNLSNNKF----EGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNF 528
L+LS N+ L + LK + S N + V L
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNS-LKSIDFSSNQIFLVCEHELEPL 171
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 4e-35
Identities = 81/461 (17%), Positives = 150/461 (32%), Gaps = 40/461 (8%)
Query: 92 LCNVSVSNNQLM---GNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNS 148
+ +T +++ LDLS N + + + NL +L + S+
Sbjct: 7 SGVCDGRSRSFTSIPSGLTA-----AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61
Query: 149 FEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDS 208
F LG L++LDL N L S+ +++L N + L +
Sbjct: 62 INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121
Query: 209 SFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILR 267
++++Q L I E+ +L + L S + + L
Sbjct: 122 --LTNLQTLRIGNVETFSEI-RRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178
Query: 268 LGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPA 327
L ++ + L + SS + L+L L S + GS+
Sbjct: 179 LHLSESAFLLEIFADILSS--VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236
Query: 328 RVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTS-QFLRLTSFKVS 386
++ L L LS ++ + + + + +V + + + +
Sbjct: 237 DESFNELLKLLRYILE--LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294
Query: 387 NNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNN--------- 437
L DL V ++K I + + + L L+LS N
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354
Query: 438 -FSGPLP-LQEI--QNN------PSTGSTQNL-SLTSLDLAYNSLSGRLLPGISKFHNLV 486
G P LQ + N + L +LTSLD++ N+ + +
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMR 413
Query: 487 YLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRN 527
+LNLS+ + +P L+ +VS NNL L
Sbjct: 414 FLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLD-SFSLFLPR 452
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 1e-31
Identities = 81/458 (17%), Positives = 164/458 (35%), Gaps = 48/458 (10%)
Query: 88 GLKMLCNVSVSNNQLMGNITD--IGSIQSLEFLDLSHNLFHGLIPSGIVS-LKNLMLLNI 144
L L ++ +S+N L +++ G + SL++L+L N + L + + L NL L I
Sbjct: 72 SLGSLEHLDLSDNHL-SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130
Query: 145 SSNSFEGTFPSG-FGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDL 203
+ F GL L L+++A L + + H+ L ++ + L
Sbjct: 131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA---FL 187
Query: 204 GLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSL 263
+ +SS++YL + + +L + + + V SFN + L
Sbjct: 188 LEIFADILSSVRYLELRDTNL-ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246
Query: 264 RILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSG 323
L +++ + L + + S + + +G + + T++++++ L
Sbjct: 247 LRYILELSEVE------FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300
Query: 324 SLPARVGHCT---IVDLSNNRLS----GDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQ 376
L + + N+++ +++ +E + LS N + ++
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS----LEFLDLSENLMVEEYLKNSAC 356
Query: 377 FLRLTS---FKVSNNSLE--GDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDL 431
S +S N L +L T L +D+S N + + S K+ L
Sbjct: 357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFL 415
Query: 432 NLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLS 491
NLS ++ ++ +L LD++ N+L L L +S
Sbjct: 416 NLSSTG------IRVVKTCIPQ------TLEVLDVSNNNLDS--FS--LFLPRLQELYIS 459
Query: 492 NNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFP 529
NK + L L +S N L V
Sbjct: 460 RNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLT 497
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 4e-26
Identities = 68/411 (16%), Positives = 130/411 (31%), Gaps = 49/411 (11%)
Query: 88 GLKMLCNVSVSNNQLMGNI--TDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNIS 145
L L + + N + I D + SL L++ + S++++ L +
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180
Query: 146 SNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGL 205
+ L ++YL+LR L + + S D
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240
Query: 206 GD----SSFISSIQYLNISENSLVG---------ELFPHDGMPYFDNLEVFDASNNHLVG 252
+ +I + + + +L G ++ G + +L
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300
Query: 253 AIPSFNFVF-SLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQL-----EGPVGSI 306
+ + + ++ + + ++++ +P + Q L LDLS N + +
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKS-LEFLDLSENLMVEEYLKNSACKG 358
Query: 307 TSATLKKVNLSSNKLSGSLPARVGHC------TIVDLSNNRLSGDLSRMQNWGNYVEDIH 360
+L+ + LS N L S+ T +D+S N Q ++
Sbjct: 359 AWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRF-LN 416
Query: 361 LSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLP 420
LSS + +V L VSNN+L+ L P L+ + +S N L LP
Sbjct: 417 LSSTGIR-VVKT--CIPQTLEVLDVSNNNLD-SFSLFL---PRLQELYISRNKLKT--LP 467
Query: 421 SFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSL 471
L + +S N +P S L + L N
Sbjct: 468 DASLFPVLLVMKISRNQLKS-VPDGIFDRLTS--------LQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 97.9 bits (244), Expect = 2e-21
Identities = 49/269 (18%), Positives = 90/269 (33%), Gaps = 16/269 (5%)
Query: 80 NFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNL 139
F + + + L + + D + + + G V +
Sbjct: 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288
Query: 140 MLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSG 199
L+I + + L K+K + + ++ L S+ +DLS N
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348
Query: 200 SLDLGLGDSSFISSIQYLNISEN---SLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPS 256
S+Q L +S+N S+ + NL D S N S
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK---NLTSLDISRNTFHPMPDS 405
Query: 257 FNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNL 316
+ +R L L S + + + Q L LD+S N L+ + L+++ +
Sbjct: 406 CQWPEKMRFLNLSSTGIR-VVKTCIPQ----TLEVLDVSNNNLDSFSLFLPR--LQELYI 458
Query: 317 SSNKLSGSLPARVGHC--TIVDLSNNRLS 343
S NKL +LP ++ +S N+L
Sbjct: 459 SRNKLK-TLPDASLFPVLLVMKISRNQLK 486
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 94.8 bits (236), Expect = 2e-20
Identities = 67/380 (17%), Positives = 128/380 (33%), Gaps = 39/380 (10%)
Query: 85 TIIGLKMLCNVSVSNNQLMG-NITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLN 143
GL L + + L + SI+ + L L + L+ L ++ L
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202
Query: 144 ISSNSFEGTFPSGFGG---LGKLKYLDLRANRFG----GDIMHLLSQLGSVVHVDLSNNQ 196
+ + S +K L R + +++ LL + + V+ +
Sbjct: 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262
Query: 197 FSGSLDLGLGDSSFIS--------SIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNN 248
+G D +S +S +I+ L+I + L + ++ N+
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL--FYDLSTVYSLLEKVKRITVENS 320
Query: 249 HLVGAIPS--FNFVFSLRILRLGSNQLSG-SLPVALLQESSMMLSELDLSLNQL---EGP 302
+ +P + SL L L N + L + + + L L LS N L +
Sbjct: 321 KV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT 379
Query: 303 VGSITSAT-LKKVNLSSNKLSGSLPARVGHC---TIVDLSNNRLSGDLSRMQNWGNYVED 358
+ + L +++S N +P ++LS+ + +E
Sbjct: 380 GEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR---VVKTCIPQTLEV 435
Query: 359 IHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFL 418
+ +S+N L + L +S N L+ LP +P L V+ +S N L
Sbjct: 436 LDVSNNNLD-SFSLFLPR---LQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVP 489
Query: 419 LPSFFTSTKLTDLNLSGNNF 438
F T L + L N +
Sbjct: 490 DGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 2e-13
Identities = 39/187 (20%), Positives = 68/187 (36%), Gaps = 31/187 (16%)
Query: 88 GLKMLCNVSVSNNQL----MGNITDIGSIQSLEFLDLSHNLFHGL--IPSGIVSLKNLML 141
LK L + +S N + + N G+ SL+ L LS N + +++LKNL
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 391
Query: 142 LNISSNSFEGTFPSGFGGLGKLKYLDLRANRF-----------------GGDIMHLLSQL 184
L+IS N+F P K+++L+L + ++ L
Sbjct: 392 LDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFL 450
Query: 185 GSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFD 244
+ + +S N+ L D+S + + IS N L + P +L+
Sbjct: 451 PRLQELYISRNKLKT-----LPDASLFPVLLVMKISRNQL--KSVPDGIFDRLTSLQKIW 503
Query: 245 ASNNHLV 251
N
Sbjct: 504 LHTNPWD 510
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 2e-34
Identities = 85/459 (18%), Positives = 167/459 (36%), Gaps = 60/459 (13%)
Query: 98 SNNQLMG-NITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSG 156
S N L S L+ LDLS + SL +L L ++ N +
Sbjct: 36 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95
Query: 157 FGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDS-SFISSIQ 215
F GL L+ L + L ++ +++++N L + S +++++
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ---SFKLPEYFSNLTNLE 152
Query: 216 YLNISENSLVGELFPHDGMPYFDNLEVF----DASNNHLVGAIPSFNFV-FSLRILRLGS 270
+L++S N + + + + + D S N + I F L L L +
Sbjct: 153 HLDLSSNKI--QSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLHKLTLRN 209
Query: 271 NQLSGSLPVALLQESSMMLSELDLSLNQL----------EGPVGSITSATLKKVNLSSNK 320
N S ++ +Q + L L L + + + + + T+++ L+
Sbjct: 210 NFDSLNVMKTCIQGLAG-LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268
Query: 321 LSGSLPARV----GHCTIVDLSNNRLSG--DLSRMQNWGNYVEDIHLSSNFLTGMVPNQT 374
+ + + L + + D S W + + L + +
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW----QHLELVNCKFGQFPTLKL 324
Query: 375 SQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLN--GFLLPSFFTSTKLTDLN 432
RLT ++N G+ + + P L+ +DLS N L+ G S F +T L L+
Sbjct: 325 KSLKRLT---FTSNKG-GNAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379
Query: 433 LSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFH---NLVYLN 489
LS N + + +N L LD +++L + S F NL+YL+
Sbjct: 380 LSFNG------VITMSSNFLGLE----QLEHLDFQHSNLKQ--MSEFSVFLSLRNLIYLD 427
Query: 490 LSNNKFEG---SIPDGLPNGLKEFNVSFNNLSGVVPENL 525
+S+ I +GL + L+ ++ N+ ++
Sbjct: 428 ISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDI 465
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 5e-34
Identities = 91/436 (20%), Positives = 165/436 (37%), Gaps = 43/436 (9%)
Query: 88 GLKMLCNVSVSNNQL--MGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNL----ML 141
LK L ++V++N + ++ +LE LDLS N + + + L + +
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181
Query: 142 LNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMH-LLSQLGSVVHVDLSNNQFSGS 200
L++S N P F + +L L LR N ++M + L + L +F
Sbjct: 182 LDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240
Query: 201 LDLGLGDSSFISSIQYLNISENSLVG-ELFPHDGMPYFD---NLEVFDASNNHLVGAIPS 256
+L D S + + L I E L + + D + F+ N+ F + + +
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKD 299
Query: 257 FNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNL 316
F++ F + L L + + P L+ L L + N+ + +L+ ++L
Sbjct: 300 FSYNFGWQHLELVNCKFG-QFPTLKLKS----LKRLTFTSNKGGNAFSEVDLPSLEFLDL 354
Query: 317 SSNKLS-----GSLPARVGHCTIVDLSNNRL---SGDLSRMQNWGNYVEDIHLSSNFLTG 368
S N LS +DLS N + S + ++ +E + + L
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ----LEHLDFQHSNLKQ 410
Query: 369 MVPNQTSQFLR-LTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTS-T 426
M LR L +S+ + L+V+ ++ N LP FT
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470
Query: 427 KLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGI-SKFHNL 485
LT L+LS L+++ + SL L++A N L + GI + +L
Sbjct: 471 NLTFLDLSQCQ------LEQLSPTAFNSLS---SLQVLNMASNQLK-SVPDGIFDRLTSL 520
Query: 486 VYLNLSNNKFEGSIPD 501
+ L N ++ S P
Sbjct: 521 QKIWLHTNPWDCSCPR 536
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 3e-19
Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 25/303 (8%)
Query: 62 CTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLS 121
N + L + + L + + S+ + + + D + L+L
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELV 312
Query: 122 HNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANR--FGGDIMH 179
+ F + SLK L + + L L++LDL N F G
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFTSNKGGNA-----FSEVDLPSLEFLDLSRNGLSFKGCCSQ 367
Query: 180 LLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDN 239
S+ ++DLS N ++ + + +++L+ ++L ++ N
Sbjct: 368 SDFGTTSLKYLDLSFNGVI-TMS---SNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRN 422
Query: 240 LEVFDASNNHLVGAIPS-FNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQ 298
L D S+ H A FN + SL +L++ N + + E L+ LDLS Q
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN-LTFLDLSQCQ 481
Query: 299 LEG-PVGSITSAT-LKKVNLSSNKLSGSLPARVGHC----TIVDLSNNRLSGDLSR---M 349
LE + S + L+ +N++SN+L S+P + + L N R +
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540
Query: 350 QNW 352
W
Sbjct: 541 SRW 543
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 7e-16
Identities = 52/241 (21%), Positives = 87/241 (36%), Gaps = 19/241 (7%)
Query: 308 SATLKKVNLSSNKLSGSLPARVGHC---TIVDLSNNRLS----GDLSRMQNWGNYVEDIH 360
+ K ++LS N L ++DLS + G + + + +
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH----LSTLI 82
Query: 361 LSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLP 420
L+ N + + S L +L +G LK ++++ N + F LP
Sbjct: 83 LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 421 SFFTS-TKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGI 479
+F++ T L L+LS N + +++ L SLDL+ N ++ + PG
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQM----PLLNLSLDLSLNPMN-FIQPGA 196
Query: 480 SKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPEN-LRNFPDSAFHPGNS 538
K L L L NN ++ GL V L E L F SA +
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256
Query: 539 L 539
L
Sbjct: 257 L 257
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 8e-13
Identities = 37/206 (17%), Positives = 70/206 (33%), Gaps = 25/206 (12%)
Query: 333 TIVDLSNNRLS---GDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNS 389
+L +++ LS N L + F L +S
Sbjct: 10 ITYQCMELNFYKIPDNLP------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE 63
Query: 390 LEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQN 449
++ + L + L+ N + L +F + L L N L ++N
Sbjct: 64 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN------LASLEN 117
Query: 450 NPSTGSTQNLSLTSLDLAYNSL-SGRLLPGISKFHNLVYLNLSNNKFEGSIPD------G 502
P +L L++A+N + S +L S NL +L+LS+NK +
Sbjct: 118 FPIGHLK---TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174
Query: 503 LPNGLKEFNVSFNNLSGVVPENLRNF 528
+P ++S N ++ + P +
Sbjct: 175 MPLLNLSLDLSLNPMNFIQPGAFKEI 200
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 3e-34
Identities = 63/409 (15%), Positives = 154/409 (37%), Gaps = 67/409 (16%)
Query: 88 GLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSN 147
G L + + I + L ++ L+++ L ++
Sbjct: 1 GAATL---ATLPAPI-NQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGE 54
Query: 148 SFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGD 207
G L L+YL+L N+ + LS L + ++ + N+ + +
Sbjct: 55 KV--ASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT-----DISA 105
Query: 208 SSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILR 267
+++++ L ++E+++ + P + + + NH + + + + L L
Sbjct: 106 LQNLTNLRELYLNEDNISD-ISPLANLT---KMYSLNLGANHNLSDLSPLSNMTGLNYLT 161
Query: 268 LGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG--PVGSITSATLKKVNLSSNKLSGSL 325
+ +++ P+A L + L L L+ NQ+E P+ S+TS L N+++
Sbjct: 162 VTESKVKDVTPIANLTD----LYSLSLNYNQIEDISPLASLTS--LHYFTAYVNQITDIT 215
Query: 326 PARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKV 385
P ++ M + + + +N +T + P + +LT ++
Sbjct: 216 P-------------------VANMTR----LNSLKIGNNKITDLSP--LANLSQLTWLEI 250
Query: 386 SNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQ 445
N + D+ A + +LK++++ N ++ + ++L L L+ N ++
Sbjct: 251 GTNQIS-DINA-VKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGN-EDME 305
Query: 446 EIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNK 494
I +LT+L L+ N ++ + ++ + + +N
Sbjct: 306 VIGGLT--------NLTTLFLSQNHITD--IRPLASLSKMDSADFANQV 344
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 8e-30
Identities = 67/361 (18%), Positives = 143/361 (39%), Gaps = 57/361 (15%)
Query: 84 PTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLN 143
T L+ + + V+ ++ +I I + +LE+L+L+ N + P + +L L L
Sbjct: 38 VTQEELESITKLVVAGEKV-ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLY 94
Query: 144 ISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDL 203
I +N T S L L+ L L+ + S L
Sbjct: 95 IGTNKI--TDISALQNLTNLREL------------------------YLNEDNISDISPL 128
Query: 204 GLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSL 263
++ + LN+ N + +L P M L + + + + + L
Sbjct: 129 A-----NLTKMYSLNLGANHNLSDLSPLSNMT---GLNYLTVTESKVKD-VTPIANLTDL 179
Query: 264 RILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG--PVGSITSATLKKVNLSSNKL 321
L L NQ+ P+A L L +NQ+ PV ++T L + + +NK+
Sbjct: 180 YSLSLNYNQIEDISPLASLTS----LHYFTAYVNQITDITPVANMTR--LNSLKIGNNKI 233
Query: 322 SGSLPARVGHCT---IVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFL 378
+ P + + + +++ N++S D++ +++ ++ +++ SN ++ + +
Sbjct: 234 TDLSP--LANLSQLTWLEIGTNQIS-DINAVKDLTK-LKMLNVGSNQISDISV--LNNLS 287
Query: 379 RLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNF 438
+L S ++NN L + V+G L + LS NH+ + + +K+ + +
Sbjct: 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPLASLSKMDSADFANQVI 345
Query: 439 S 439
Sbjct: 346 K 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 1e-27
Identities = 52/322 (16%), Positives = 118/322 (36%), Gaps = 36/322 (11%)
Query: 212 SSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSN 271
+ + + S+ + + +++ + + I ++ +L L L N
Sbjct: 22 AEGIRAVLQKASVTDVVTQEE----LESITKLVVAGEKVAS-IQGIEYLTNLEYLNLNGN 76
Query: 272 QLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGH 331
Q++ P++ L + L+ L + N++ L+++ L+ + +S P + +
Sbjct: 77 QITDISPLSNLVK----LTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP--LAN 130
Query: 332 CT---IVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNN 388
T ++L N DLS + N + + ++ + + + P + L S ++ N
Sbjct: 131 LTKMYSLNLGANHNLSDLSPLSNMTG-LNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187
Query: 389 SLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQ 448
+E D+ L + L +N + + T+L L + N + PL +
Sbjct: 188 QIE-DISP-LASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSPLANLS 243
Query: 449 NNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIP-DGLPNGL 507
LT L++ N +S + + L LN+ +N+ + L L
Sbjct: 244 Q-----------LTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISVLNNLSQ-L 289
Query: 508 KEFNVSFNNLSGVVPENLRNFP 529
++ N L E +
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGLT 311
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 4e-21
Identities = 40/243 (16%), Positives = 98/243 (40%), Gaps = 22/243 (9%)
Query: 82 SFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLML 141
+ L + ++++ N + +++ + ++ L +L ++ + + P I +L +L
Sbjct: 124 DISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181
Query: 142 LNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSL 201
L+++ N E S L L Y N+ ++ + + + + NN+ +
Sbjct: 182 LSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS 237
Query: 202 DLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVF 261
L +S + +L I N + + + L++ + +N + I N +
Sbjct: 238 PLA-----NLSQLTWLEIGTNQISDI----NAVKDLTKLKMLNVGSNQISD-ISVLNNLS 287
Query: 262 SLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG--PVGSITSATLKKVNLSSN 319
L L L +NQL + ++ L+ L LS N + P+ S++ + + ++
Sbjct: 288 QLNSLFLNNNQLGNEDMEVIGGLTN--LTTLFLSQNHITDIRPLASLSK--MDSADFANQ 343
Query: 320 KLS 322
+
Sbjct: 344 VIK 346
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 1e-33
Identities = 88/469 (18%), Positives = 155/469 (33%), Gaps = 80/469 (17%)
Query: 84 PTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLN 143
P + L ++ L + +++S + + + P G + + +
Sbjct: 5 PRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64
Query: 144 ISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDL 203
+ + L+L + L + + S N + L
Sbjct: 65 LRDCLDR-----------QAHELELNNLG----LSSLPELPPHLESLVASCNSLT-ELPE 108
Query: 204 GLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSL 263
+ S+ N + +L LE SNN L +P L
Sbjct: 109 LPQS---LKSLLVDNNNLKALSDLP---------PLLEYLGVSNNQLE-KLPELQNSSFL 155
Query: 264 RILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG--PVGSITSATLKKVNLSSNKL 321
+I+ + +N L LP L + NQLE + ++ L + +N L
Sbjct: 156 KIIDVDNNSLK-KLPDLPPS-----LEFIAAGNNQLEELPELQNLPF--LTAIYADNNSL 207
Query: 322 SGSLPARVGHCTIVDLSNNRLSG--DLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLR 379
LP + NN L +L + + I+ +N L +P+
Sbjct: 208 K-KLPDLPLSLESIVAGNNILEELPELQNLPF----LTTIYADNNLLK-TLPDLPPS--- 258
Query: 380 LTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFS 439
L + V +N L DLP + + L +D+S N +G L + L LN S N
Sbjct: 259 LEALNVRDNYLT-DLPELPQS---LTFLDVSENIFSG--LSELPPN--LYYLNASSNE-- 308
Query: 440 GPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSI 499
++ + + P SL L+++ N L LP + L L S N +
Sbjct: 309 ----IRSLCDLPP-------SLEELNVSNNKLIE--LP--ALPPRLERLIASFNHLA-EV 352
Query: 500 PDGLPNGLKEFNVSFNNLSGVVPENLRNFPDSAFHPGNSLLTFPNSPSQ 548
P+ N LK+ +V +N L P+ + D + L P P
Sbjct: 353 PELPQN-LKQLHVEYNPLR-EFPDIPESVED--LRMNSHLAEVPELPQN 397
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-24
Identities = 69/363 (19%), Positives = 126/363 (34%), Gaps = 57/363 (15%)
Query: 92 LCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEG 151
L + VSNNQL + ++ + L+ +D+ +N L +L + +N E
Sbjct: 133 LEYLGVSNNQLE-KLPELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLE- 186
Query: 152 TFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFI 211
P L L + N + L S+ + NN +L +
Sbjct: 187 ELPE-LQNLPFLTAIYADNNS----LKKLPDLPLSLESIVAGNNILEELPELQN-----L 236
Query: 212 SSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSN 271
+ + N L + P +LE + +N+L SL L + N
Sbjct: 237 PFLTTIYADNNLL--KTLP----DLPPSLEALNVRDNYLTDLPELPQ---SLTFLDVSEN 287
Query: 272 QLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGH 331
SG L E L L+ S N++ S L+++N+S+NKL LPA
Sbjct: 288 IFSG------LSELPPNLYYLNASSNEIRSLCDLPPS--LEELNVSNNKLI-ELPALPPR 338
Query: 332 CTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGM-----------VPNQTSQFLR- 379
+ S N L+ QN ++ +H+ N L + + ++
Sbjct: 339 LERLIASFNHLAEVPELPQN----LKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPEL 394
Query: 380 ---LTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGN 436
L V N L + P + + ++ + ++ + + T+ KL D +
Sbjct: 395 PQNLKQLHVETNPLR-EFPDIPES---VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450
Query: 437 NFS 439
+
Sbjct: 451 HHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 6e-20
Identities = 61/307 (19%), Positives = 103/307 (33%), Gaps = 43/307 (14%)
Query: 82 SFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLML 141
P + L L + NN L SLE + +N+ + +L L
Sbjct: 187 ELPELQNLPFLTAIYADNNSL---KKLPDLPLSLESIVAGNNILE--ELPELQNLPFLTT 241
Query: 142 LNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSL 201
+ +N + T P L+ L++R N + L S+ +D+S N FS L
Sbjct: 242 IYADNNLLK-TLPDL---PPSLEALNVRDNY----LTDLPELPQSLTFLDVSENIFS-GL 292
Query: 202 DLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVF 261
S ++ YLN S N + L +LE + SNN L+ +P+
Sbjct: 293 ------SELPPNLYYLNASSNEIR-SLCDL-----PPSLEELNVSNNKLI-ELPAL--PP 337
Query: 262 SLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKL 321
L L N L+ +P L +L + N L S +L N
Sbjct: 338 RLERLIASFNHLA-EVPELPQN-----LKQLHVEYNPLREFPDIPESVE----DLRMNSH 387
Query: 322 SGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLT 381
+P + + + N L + VED+ ++S + +L
Sbjct: 388 LAEVPELPQNLKQLHVETNP----LREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLE 443
Query: 382 SFKVSNN 388
++
Sbjct: 444 DDVFEHH 450
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 4e-29
Identities = 67/415 (16%), Positives = 129/415 (31%), Gaps = 38/415 (9%)
Query: 106 ITDI-GSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLK 164
I +I + + ++ + + S S N+ L++S N + KL+
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 165 YLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSL 224
L+L +N L L ++ +DL+NN L +G SI+ L+ + N++
Sbjct: 62 LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-ELLVG-------PSIETLHAANNNI 111
Query: 225 VGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQ 283
+ +NN + ++ L L N++ ++ A L
Sbjct: 112 --SRVS---CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELA 165
Query: 284 ESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCT---IVDLSNN 340
SS L L+L N + G + A LK ++LSSNKL+ + + L NN
Sbjct: 166 ASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN 224
Query: 341 RLS---GDLSRMQNWGNYVEDIHLSSNFLTGMVPNQT-SQFLRLTSFKVSNNSLEGDLPA 396
+L L QN +E L N S+ R+ + V+ +++
Sbjct: 225 KLVLIEKALRFSQN----LEHFDLRGNGFHCGTLRDFFSKNQRVQT--VAKQTVKKLTGQ 278
Query: 397 VLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGST 456
+ P L + + G + ++
Sbjct: 279 NEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG-SETERLE----CERE 333
Query: 457 QNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFN 511
+D + + + L + E +
Sbjct: 334 NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD-EQVSNGRRAHAELD 387
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-24
Identities = 48/405 (11%), Positives = 110/405 (27%), Gaps = 25/405 (6%)
Query: 82 SFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLML 141
+ L L + ++NN + ++ S+E L ++N + S +
Sbjct: 72 ETLDLESLSTLRTLDLNNNY----VQELLVGPSIETLHAANNNISRVSCS---RGQGKKN 124
Query: 142 LNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGG-DIMHLLSQLGSVVHVDLSNNQFSGS 200
+ +++N G +++YLDL+ N + L + ++ H++L N
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-- 182
Query: 201 LDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFV 260
+ + ++ L++S N L + NN LV + F
Sbjct: 183 ---DVKGQVVFAKLKTLDLSSNKL--AFMG-PEFQSAAGVTWISLRNNKLVLIEKALRFS 236
Query: 261 FSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNK 320
+L L N + + + + + +
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFS-KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295
Query: 321 LSGSLPARVGHCTIVDLSNNRL-------SGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQ 373
+ + L + L + +I ++
Sbjct: 296 CEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQV 355
Query: 374 TSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNL 433
T + + + +L+ + + EL L + + L L
Sbjct: 356 TLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI-ELQHATEEQSPLQLLRA 414
Query: 434 SGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPG 478
+ Q+ N + LA + + L G
Sbjct: 415 IVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNG 459
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 94.5 bits (235), Expect = 2e-20
Identities = 58/315 (18%), Positives = 120/315 (38%), Gaps = 31/315 (9%)
Query: 239 NLEVFDASNNHLVGAIPS-FNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLN 297
++ +++ L A+ S ++++ L L N LS L + L L+LS N
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK--LELLNLSSN 68
Query: 298 QLEG--PVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSG-DLSRMQNWGN 354
L + S+++ L+ ++L++N + L + +NN +S SR Q
Sbjct: 69 VLYETLDLESLST--LRTLDLNNNYVQ-ELLV-GPSIETLHAANNNISRVSCSRGQG--- 121
Query: 355 YVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEG-DLPAVLGTYPELKVIDLSLNH 413
++I+L++N +T + R+ + N ++ + + + L+ ++L N
Sbjct: 122 -KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180
Query: 414 LNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSG 473
+ + KL L+LS N + + E Q+ +T + L N L
Sbjct: 181 IYD--VKGQVVFAKLKTLDLSSNKLAF-MG-PEFQSAAG--------VTWISLRNNKLV- 227
Query: 474 RLLPGISKFHNLVYLNLSNNKFE-GSIPDGLPNGLKEFNVSFNNLSGVVPENLRN--FPD 530
+ + NL + +L N F G++ D + V+ + + +N P
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287
Query: 531 SAFHPGNSLLTFPNS 545
+ P
Sbjct: 288 LGHYGAYCCEDLPAP 302
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 9e-29
Identities = 84/400 (21%), Positives = 142/400 (35%), Gaps = 58/400 (14%)
Query: 123 NLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLS 182
+ I S + ++I + + F L K + + + LL
Sbjct: 7 QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD 66
Query: 183 QLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEV 242
V ++L++ Q I + ++
Sbjct: 67 SFRQVELLNLNDLQIE-------------------EIDTYAFAY----------AHTIQK 97
Query: 243 FDASNNHLVGAIPS--FNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLE 300
N + +P F V L +L L N LS SLP + + L+ L +S N LE
Sbjct: 98 LYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTP-KLTTLSMSNNNLE 154
Query: 301 G-PVGSITSAT-LKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVED 358
+ + T L+ + LSSN+L+ + + ++S N LS L+ VE+
Sbjct: 155 RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS-TLAIPIA----VEE 209
Query: 359 IHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFL 418
+ S N + +V + LT K+ +N+L D L YP L +DLS N L +
Sbjct: 210 LDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIM 264
Query: 419 LPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPG 478
F +L L +S N + G +L LDL++N L +
Sbjct: 265 YHPFVKMQRLERLYISNNR---------LVALNLYGQ-PIPTLKVLDLSHNHLL-HVERN 313
Query: 479 ISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLS 518
+F L L L +N ++ + LK +S N+
Sbjct: 314 QPQFDRLENLYLDHNSIV-TLKLSTHHTLKNLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 1e-28
Identities = 84/418 (20%), Positives = 163/418 (38%), Gaps = 63/418 (15%)
Query: 94 NVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTF 153
++ + + DI ++ + + + ++ L + + S + + LLN++ E
Sbjct: 27 HIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID 85
Query: 154 PSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISS 213
F ++ L + N H+ + + + L N S
Sbjct: 86 TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS--------------- 130
Query: 214 IQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPS--FNFVFSLRILRLGSN 271
SL +F P L SNN+L I F SL+ L+L SN
Sbjct: 131 ---------SLPRGIF--HNTP---KLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSN 175
Query: 272 QLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSAT-LKKVNLSSNKLSGSLPARV- 329
+L+ + ++L+ L ++S N L ++ +++++ S N ++ + V
Sbjct: 176 RLT-HVDLSLIPS----LFHANVSYNLLS----TLAIPIAVEELDASHNSIN-VVRGPVN 225
Query: 330 GHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNS 389
TI+ L +N L+ D + + N+ + ++ LS N L ++ + + RL +SNN
Sbjct: 226 VELTILKLQHNNLT-DTAWLLNYPG-LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283
Query: 390 LEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQN 449
L L P LKV+DLS NHL + + +L +L L N+ + ++
Sbjct: 284 LV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS------IVTLKL 335
Query: 450 NPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGL 507
+ +L +L L++N L + F N+ + + I L +GL
Sbjct: 336 STHH------TLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGL 385
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 5e-12
Identities = 43/217 (19%), Positives = 87/217 (40%), Gaps = 23/217 (10%)
Query: 315 NLSSNKLSGSLPARVGHCTIVDLSNNRLS----GDLSRMQNWGNYVEDIHLSSNFLTGMV 370
+ + G + + IV N+ + L + VE ++L+ + +
Sbjct: 30 MQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ----VELLNLNDLQIEEID 85
Query: 371 PNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTD 430
+ + + N++ P V P L V+ L N L+ F + KLT
Sbjct: 86 TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145
Query: 431 LNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNL 490
L++S NN L+ I+++ +T SL +L L+ N L+ + +S +L + N+
Sbjct: 146 LSMSNNN------LERIEDDTFQATT---SLQNLQLSSNRLTH--VD-LSLIPSLFHANV 193
Query: 491 SNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRN 527
S N ++ + ++E + S N+++ V
Sbjct: 194 SYNLLS-TLAIPI--AVEELDASHNSINVVRGPVNVE 227
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 15/178 (8%)
Query: 354 NYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNH 413
D+H+ + N+++ A+L ++ ++++++L+
Sbjct: 21 CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 80
Query: 414 LNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSG 473
+ +F + + L + N ++ + + LT L L N LS
Sbjct: 81 IEEIDTYAFAYAHTIQKLYMGFNA------IRYLPPHVFQNVP---LLTVLVLERNDLS- 130
Query: 474 RLLPGI-SKFHNLVYLNLSNNKFEGSIPDGLPNG---LKEFNVSFNNLSGVVPENLRN 527
L GI L L++SNN E I D L+ +S N L+ V + +
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS 187
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 88 GLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSN 147
++ L + +SNN+L+ I +L+ LDLSHN + L L + N
Sbjct: 270 KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHN 328
Query: 148 SFEGTFPSGFGGLGKLKYLDLRANRFGGD-IMHLLSQL 184
S T LK L L N + + + L +
Sbjct: 329 SIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNV 363
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 19/155 (12%), Positives = 48/155 (30%), Gaps = 21/155 (13%)
Query: 394 LPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFS-------GPLP-LQ 445
+ + L + + + + + T + + ++
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72
Query: 446 E--IQNNP----STGSTQNL-SLTSLDLAYNSLSGRLLPGI-SKFHNLVYLNLSNNKFEG 497
+ + T + ++ L + +N++ L P + L L L N
Sbjct: 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS- 130
Query: 498 SIPDGLPNG---LKEFNVSFNNLSGVVPENLRNFP 529
S+P G+ + L ++S NNL + + +
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 165
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 3e-28
Identities = 83/460 (18%), Positives = 149/460 (32%), Gaps = 45/460 (9%)
Query: 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRF 173
L++S N L S I+SL L +L IS N + S F +L+YLDL N+
Sbjct: 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81
Query: 174 GGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDG 233
H L H+DLS N F + +S +++L +S L
Sbjct: 82 VKISCHPTVNL---KHLDLSFNAFDALPICKEFGN--MSQLKFLGLSTTHLEKSSVLPIA 136
Query: 234 MPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELD 293
+ + L + +L S ++ L+
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGL---QDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193
Query: 294 LSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWG 353
LS + + L +N +L T S R+ + W
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT--WNSFIRILQLVWHTTVWY 251
Query: 354 NYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNH 413
+ ++ L + L+ +V ++ + + + + + +++
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311
Query: 414 LNGFLLPSFFTSTKLTDLNLSGN--------NFSGPLPLQE--IQNN------PSTGSTQ 457
+ + L+ S N N L+ +Q N T
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371
Query: 458 NL-SLTSLDLAYNSLSGRLLPGI-SKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFN 515
+ SL LD++ NS+S G S +L+ LN+S+N +I LP +K ++ N
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN 431
Query: 516 NLSGVVPEN----------------LRNFPDSAFHPGNSL 539
+ +P+ L++ PD F SL
Sbjct: 432 KIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSL 470
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 83.0 bits (205), Expect = 1e-16
Identities = 53/273 (19%), Positives = 109/273 (39%), Gaps = 26/273 (9%)
Query: 62 CTNGYVTSIMLNDMGLVGN--FSFPTIIGLKMLCNVSVSNNQLMGNITDIG------SIQ 113
TN ++++ LN++ N ++ + S+SN +L G + S++
Sbjct: 217 QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276
Query: 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRF 173
+L + ++F N+ + N + + + +LD N
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336
Query: 174 GGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDG 233
+ L + + L NQ L ++ + S+Q L+IS+NS+ +
Sbjct: 337 TDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKK--- 392
Query: 234 MPYFD---NLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLS 290
+L + S+N L +++L L SN++ S+P +++ + L
Sbjct: 393 -GDCSWTKSLLSLNMSSNILT-DTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEA--LQ 447
Query: 291 ELDLSLNQL----EGPVGSITSATLKKVNLSSN 319
EL+++ NQL +G +TS L+K+ L +N
Sbjct: 448 ELNVASNQLKSVPDGIFDRLTS--LQKIWLHTN 478
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 82.6 bits (204), Expect = 2e-16
Identities = 57/390 (14%), Positives = 138/390 (35%), Gaps = 34/390 (8%)
Query: 72 LNDMGLVGNFSFPTIIGLKMLCNVSVSNNQL-MGNITDIGSIQSLEFLDLSHNLFHGLIP 130
+ + + F + L + +S L ++ I + + L + +
Sbjct: 102 FDALPICKEFG-----NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED 156
Query: 131 SG---IVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSV 187
+ ++L ++ ++ F + L+ +++ + LS L +
Sbjct: 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKL 216
Query: 188 V------HVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLE 241
++ L+N + + + + + + +++ Y +IS L G+L D +L+
Sbjct: 217 QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276
Query: 242 VFDASNNHLVGAIPSFNFVF----SLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLN 297
++++ ++ I + + + + S LD S N
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCPSKISP-FLHLDFSNN 334
Query: 298 QL-EGPVGSITSAT-LKKVNLSSNKLSGSLPARVG------HCTIVDLSNNRLSGDLSRM 349
L + + T L+ + L N+L L +D+S N +S D +
Sbjct: 335 LLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393
Query: 350 Q-NWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVID 408
+W + +++SSN LT + R+ + +N ++ +P + L+ ++
Sbjct: 394 DCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNKIK-SIPKQVVKLEALQELN 450
Query: 409 LSLNHLNGFLLPSFFTSTKLTDLNLSGNNF 438
++ N L F T L + L N +
Sbjct: 451 VASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 1e-11
Identities = 62/366 (16%), Positives = 116/366 (31%), Gaps = 46/366 (12%)
Query: 190 VDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNH 249
VD S N + L LNIS+N + EL+ D + L + S+N
Sbjct: 5 VDRSKNGLI-HVPKDLS-----QKTTILNISQNYIS-ELWTSD-ILSLSKLRILIISHNR 56
Query: 250 LVGAIPS--FNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLE-----GP 302
+ + F F L L L N+L + L LDLS N +
Sbjct: 57 I-QYLDISVFKFNQELEYLDLSHNKLV-KISCHPTVN----LKHLDLSFNAFDALPICKE 110
Query: 303 VGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDL-----SNNRLSGDLSRMQNWGNYVE 357
G+++ LK + LS+ L S + H I + D +Q++
Sbjct: 111 FGNMSQ--LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL 168
Query: 358 DIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYP----------ELKVI 407
I +N + + + + + LE + + + L +
Sbjct: 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLN 228
Query: 408 DLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLA 467
++ + + T + ++S G L + T +L+ +
Sbjct: 229 NIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDF----RDFDYSGTSLKALSIHQVV 284
Query: 468 YNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEF---NVSFNNLSGVVPEN 524
+ F N+ N + + + P+ + F + S N L+ V EN
Sbjct: 285 SDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFEN 343
Query: 525 LRNFPD 530
+ +
Sbjct: 344 CGHLTE 349
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 35/200 (17%), Positives = 68/200 (34%), Gaps = 22/200 (11%)
Query: 333 TIVDLSNNRLS---GDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNS 389
+VD S N L DLS+ +++S N+++ + + +L +S+N
Sbjct: 3 FLVDRSKNGLIHVPKDLSQ------KTTILNISQNYISELWTSDILSLSKLRILIISHNR 56
Query: 390 LEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQN 449
++ +V EL+ +DLS N L S + L L+LS N +
Sbjct: 57 IQYLDISVFKFNQELEYLDLSHNKLVKI---SCHPTVNLKHLDLSFN------AFDAL-- 105
Query: 450 NPSTGSTQNL-SLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLK 508
P N+ L L L+ L + I+ + L + +
Sbjct: 106 -PICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164
Query: 509 EFNVSFNNLSGVVPENLRNF 528
++ + + +
Sbjct: 165 TESLHIVFPTNKEFHFILDV 184
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 118 bits (296), Expect = 1e-27
Identities = 78/425 (18%), Positives = 165/425 (38%), Gaps = 38/425 (8%)
Query: 87 IGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISS 146
+G + NV + +++ + + ++L N ++ +
Sbjct: 1 VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN 60
Query: 147 NSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLG 206
++ + +++ L+L + + + ++ + + N L +
Sbjct: 61 STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVF 119
Query: 207 DSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPS--FNFVFSLR 264
+ + + L + N L P L SNN+L I F SL+
Sbjct: 120 QN--VPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQ 174
Query: 265 ILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSAT-LKKVNLSSNKLSG 323
L+L SN+L+ + ++L+ L ++S N L ++ +++++ S N ++
Sbjct: 175 NLQLSSNRLT-HVDLSLIPS----LFHANVSYNLLS----TLAIPIAVEELDASHNSIN- 224
Query: 324 SLPARV-GHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTS 382
+ V TI+ L +N L+ D + + N+ + ++ LS N L ++ + + RL
Sbjct: 225 VVRGPVNVELTILKLQHNNLT-DTAWLLNYPG-LVEVDLSYNELEKIMYHPFVKMQRLER 282
Query: 383 FKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPL 442
+SNN L L P LKV+DLS NHL + + +L +L L N+
Sbjct: 283 LYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS----- 335
Query: 443 PLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDG 502
+ ++ + + +L +L L++N L + F N+ + + I
Sbjct: 336 -IVTLKLS------THHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQ 386
Query: 503 LPNGL 507
L +GL
Sbjct: 387 LEHGL 391
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-25
Identities = 85/465 (18%), Positives = 153/465 (32%), Gaps = 40/465 (8%)
Query: 81 FSFPTIIGLKMLCNVSVSNNQLMG-NITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNL 139
+ I L V+ N+ + + S + +E L+L+ + +
Sbjct: 42 YFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTI 101
Query: 140 MLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSG 199
L + N+ P F + L L L N + + + +SNN
Sbjct: 102 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE- 160
Query: 200 SLDLGLGDSSF--ISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSF 257
+ D +F +S+Q L +S N L +L + S N L +
Sbjct: 161 ----RIEDDTFQATTSLQNLQLSSNRL--THVDLSL---IPSLFHANVSYNLL----STL 207
Query: 258 NFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLS 317
++ L N ++ + + E L+ L L N L + L +V+LS
Sbjct: 208 AIPIAVEELDASHNSIN-VVRGPVNVE----LTILKLQHNNLTDTAWLLNYPGLVEVDLS 262
Query: 318 SNKLSGSLPARVGHC----TIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQ 373
N+L + + +SNNRL Q ++ + LS N L V
Sbjct: 263 YNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT-LKVLDLSHNHLL-HVERN 319
Query: 374 TSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNL 433
QF RL + + +NS+ L L T+ LK + LS N + L + F + ++
Sbjct: 320 QPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDD 376
Query: 434 SGNNFSGPLPLQ------EIQNNPSTGSTQNLSLTSLDLAYNSLSGRL--LPGISKFHNL 485
+ + L+ E Q ++LTS+ GR I+ +L
Sbjct: 377 ADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSL 436
Query: 486 VYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFPD 530
+ + L + E L+ + +
Sbjct: 437 SHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQG 481
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 1e-26
Identities = 73/426 (17%), Positives = 137/426 (32%), Gaps = 61/426 (14%)
Query: 98 SNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGF 157
+ + + +L LD ++ + +GI L L L +SN+ T
Sbjct: 27 AFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNIT-TLD--L 81
Query: 158 GGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYL 217
L YL +N+ + L++L +++ N+ + D S + YL
Sbjct: 82 SQNTNLTYLACDSNKLTNLDVTPLTKL---TYLNCDTNKLTKL------DVSQNPLLTYL 132
Query: 218 NISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSL 277
N + N+L L D N + + L L N+++ L
Sbjct: 133 NCARNTL--TEIDVSHNT---QLTELDCHLNKKITKLDVTPQT-QLTTLDCSFNKIT-EL 185
Query: 278 PVALLQESSMMLSELDLSLNQLEG-PVGSITSATLKKVNLSSNKLSGSLPARVGHCT--- 333
V+ + L+ L+ N + + L ++ SSNKL+ + V T
Sbjct: 186 DVSQNKL----LNRLNCDTNNITKLDLNQNIQ--LTFLDCSSNKLT-EID--VTPLTQLT 236
Query: 334 IVDLSNNRLSG-DLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEG 392
D S N L+ D+S + + +H L + + +L F+
Sbjct: 237 YFDCSVNPLTELDVSTLSK----LTTLHCIQTDLLEI---DLTHNTQLIYFQAEGCRKIK 289
Query: 393 DLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPS 452
+L + +L ++D + + KL L L+ + L +
Sbjct: 290 ELD--VTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELTE-LDV-------- 335
Query: 453 TGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNV 512
+ N L SL + + K L + + + L N V
Sbjct: 336 ---SHNTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAV 390
Query: 513 SFNNLS 518
S + L
Sbjct: 391 SPDLLD 396
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 6e-24
Identities = 73/387 (18%), Positives = 130/387 (33%), Gaps = 58/387 (14%)
Query: 136 LKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNN 195
+ + + + L L LD + M + +L + + ++N
Sbjct: 20 FASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSN 74
Query: 196 QFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP 255
+ +LDL S +++ YL N L + L + N L +
Sbjct: 75 NIT-TLDL-----SQNTNLTYLACDSNKLTN--LDVTPLT---KLTYLNCDTNKL-TKLD 122
Query: 256 SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVN 315
L L N L+ + V+ + L+ELD LN+ + L ++
Sbjct: 123 VSQNP-LLTYLNCARNTLT-EIDVSHNTQ----LTELDCHLNKKITKLDVTPQTQLTTLD 176
Query: 316 LSSNKLSGSLPARVGHCT---IVDLSNNRLSG-DLSRMQNWGNYVEDIHLSSNFLTGMVP 371
S NK++ L V ++ N ++ DL++ + + SSN LT +
Sbjct: 177 CSFNKIT-ELD--VSQNKLLNRLNCDTNNITKLDLNQNIQ----LTFLDCSSNKLTEI-- 227
Query: 372 NQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDL 431
+ +LT F S N L +L + T +L + L L T+L
Sbjct: 228 -DVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLLEIDLTHN---TQLIYF 280
Query: 432 NLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLS 491
G L + T N L LD ++ L +S+ LVYL L+
Sbjct: 281 QAEGCRKIKELDV-----------THNTQLYLLDCQAAGITE--LD-LSQNPKLVYLYLN 326
Query: 492 NNKFEGSIPDGLPNGLKEFNVSFNNLS 518
N + + LK + ++
Sbjct: 327 NTELT-ELDVSHNTKLKSLSCVNAHIQ 352
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 5e-11
Identities = 42/244 (17%), Positives = 73/244 (29%), Gaps = 27/244 (11%)
Query: 88 GLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSN 147
L + S+N+L D+ + L + D S N L S L L L+
Sbjct: 210 QNIQLTFLDCSSNKL--TEIDVTPLTQLTYFDCSVNPLTELDVST---LSKLTTLHCIQT 264
Query: 148 SFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGD 207
+L Y R ++ ++ + +D + LDL
Sbjct: 265 DLL-EID--LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELDL---- 314
Query: 208 SSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILR 267
S + YL ++ L L+ N H+ S + +L
Sbjct: 315 -SQNPKLVYLYLNNTELTE--LDVSHNT---KLKSLSCVNAHIQ-DFSSVGKIPALNNNF 367
Query: 268 LGSNQLSGSLPVALLQESSMMLS----ELDLSLNQLEGPVGSITSATLKKVNLSSNKLSG 323
Q ++P L +S+ ++ LD N + G ++ LS
Sbjct: 368 EAEGQTI-TMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLST 426
Query: 324 SLPA 327
PA
Sbjct: 427 DNPA 430
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 6e-09
Identities = 34/189 (17%), Positives = 62/189 (32%), Gaps = 27/189 (14%)
Query: 339 NNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVL 398
+ ++ + + ++ +T M + LT ++N++ L L
Sbjct: 31 QATDTISEEQLAT----LTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNIT-TLD--L 81
Query: 399 GTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQN 458
L + N L TKLT LN N + +QN
Sbjct: 82 SQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLT------------KLDVSQN 126
Query: 459 LSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLS 518
LT L+ A N+L+ + +S L L+ NK + L + SFN ++
Sbjct: 127 PLLTYLNCARNTLT--EID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT 183
Query: 519 GVVPENLRN 527
+ +
Sbjct: 184 ELDVSQNKL 192
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 8e-26
Identities = 77/386 (19%), Positives = 134/386 (34%), Gaps = 59/386 (15%)
Query: 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRF 173
L++ + L P + ++ L I N+ + P+ +L+ L++ N+
Sbjct: 41 GNAVLNVGESGLTTL-PDCL--PAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQL 93
Query: 174 GGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDG 233
+ L L + + S + L I N L P
Sbjct: 94 -TSLPVLPPGLLELSIFSNPLTHL----------PALPSGLCKLWIFGNQL--TSLP--- 137
Query: 234 MPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELD 293
L+ S+N L ++P L L +NQL+ SLP+ L EL
Sbjct: 138 -VLPPGLQELSVSDNQL-ASLP--ALPSELCKLWAYNNQLT-SLPMLPSG-----LQELS 187
Query: 294 LSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSG---DLSRMQ 350
+S NQL + L K+ +N+L+ SLPA + +S NRL+ S ++
Sbjct: 188 VSDNQLASLPTLPSE--LYKLWAYNNRLT-SLPALPSGLKELIVSGNRLTSLPVLPSELK 244
Query: 351 NWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLS 410
+ +S N LT +P S L S V N L LP L ++L
Sbjct: 245 E-------LMVSGNRLT-SLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292
Query: 411 LNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNS 470
N L+ + ++T P+ ++ + T+ L L + D +
Sbjct: 293 GNPLSE---RTLQALREITSAPGYSG----PIIRFDMAGASAPRETRALHLAAADWLVPA 345
Query: 471 LSGRLLPGISKFHNLVYLNLSNNKFE 496
G P ++H + ++
Sbjct: 346 REGEPAP-ADRWHMFGQEDNADAFSL 370
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 3e-24
Identities = 75/376 (19%), Positives = 132/376 (35%), Gaps = 57/376 (15%)
Query: 136 LKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNN 195
+LN+ + T P + L + N + L + + +++S N
Sbjct: 39 NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNN----LTSLPALPPELRTLEVSGN 91
Query: 196 QFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP 255
Q + SL + + + + L L N L ++P
Sbjct: 92 QLT-SLPVLPPG---LLELSIFSNPLTHLPALP---------SGLCKLWIFGNQL-TSLP 137
Query: 256 SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVN 315
L+ L + NQL+ SLP + L +L NQL + L++++
Sbjct: 138 --VLPPGLQELSVSDNQLA-SLPALPSE-----LCKLWAYNNQLTSLPMLPSG--LQELS 187
Query: 316 LSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTS 375
+S N+L+ SLP + NNRL+ + ++++ +S N LT +P S
Sbjct: 188 VSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSG----LKELIVSGNRLTS-LPVLPS 241
Query: 376 QFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSG 435
+ L VS N L LP + L + + N L L S + T +NL G
Sbjct: 242 E---LKELMVSGNRLT-SLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293
Query: 436 NNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKF 495
N S LQ ++ +TS + + G S L+L+ +
Sbjct: 294 NPLS-ERTLQALRE-----------ITSAPGYSGPIIRFDMAGASAPRETRALHLAAADW 341
Query: 496 EGSIPDGLPNGLKEFN 511
+G P ++
Sbjct: 342 LVPAREGEPAPADRWH 357
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 6e-24
Identities = 64/360 (17%), Positives = 120/360 (33%), Gaps = 55/360 (15%)
Query: 82 SFPTIIGLKMLCNVSVSNNQLMGNITDI-GSIQSLEFLDLSHNLFHGLIPSGIVSLKNLM 140
+ P + + + + +N L T + L L++S N L P L L
Sbjct: 54 TLPDCLP-AHITTLVIPDNNL----TSLPALPPELRTLEVSGNQLTSL-PVLPPGLLELS 107
Query: 141 LLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGS 200
+ + L L + N+ + L + + +S+NQ + S
Sbjct: 108 IFSNPLTHLPAL-------PSGLCKLWIFGNQ----LTSLPVLPPGLQELSVSDNQLA-S 155
Query: 201 LDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFV 260
L + S + L N L P L+ S+N L ++P
Sbjct: 156 LP------ALPSELCKLWAYNNQL--TSLPML----PSGLQELSVSDNQLA-SLP--TLP 200
Query: 261 FSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNK 320
L L +N+L+ SLP L EL +S N+L + LK++ +S N+
Sbjct: 201 SELYKLWAYNNRLT-SLPALPSG-----LKELIVSGNRLTSLPVLPSE--LKELMVSGNR 252
Query: 321 LSGSLPARVGHCTIVDLSNNRLSG---DLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQF 377
L+ SLP + + N+L+ L + + ++L N L+ +
Sbjct: 253 LT-SLPMLPSGLLSLSVYRNQLTRLPESLIHLSS----ETTVNLEGNPLSERTLQALRE- 306
Query: 378 LRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNN 437
+TS + + A E + + L+ + + ++ G
Sbjct: 307 --ITSAPGYSGPIIRFDMAGASAPRETRALHLAAA--DWLVPAREGEPAPADRWHMFGQE 362
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 98.4 bits (245), Expect = 2e-21
Identities = 81/368 (22%), Positives = 135/368 (36%), Gaps = 62/368 (16%)
Query: 162 KLKYLDLRANRFGGDIMHLLSQLG-SVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNIS 220
L++ + + L L + + + +N + SL + ++ L +S
Sbjct: 41 GNAVLNVGESG----LTTLPDCLPAHITTLVIPDNNLT-SLP------ALPPELRTLEVS 89
Query: 221 ENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVA 280
N L P P L +F HL A+PS L L + NQL+ SLPV
Sbjct: 90 GNQL--TSLP-VLPPGLLELSIFSNPLTHLP-ALPS-----GLCKLWIFGNQLT-SLPVL 139
Query: 281 LLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNN 340
L EL +S NQL + L K+ +N+L+ SLP + +S+N
Sbjct: 140 PPG-----LQELSVSDNQLASLPALPSE--LCKLWAYNNQLT-SLPMLPSGLQELSVSDN 191
Query: 341 RLS---GDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAV 397
+L+ S + + +N LT +P S L VS N L LP +
Sbjct: 192 QLASLPTLPSELYK-------LWAYNNRLT-SLPALPSG---LKELIVSGNRLT-SLPVL 239
Query: 398 LGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQ 457
ELK + +S N L LP + L L++ N + LP + + + S
Sbjct: 240 PS---ELKELMVSGNRLTS--LPMLPSG--LLSLSVYRNQLTR-LP-ESLIHLSS----- 285
Query: 458 NLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNL 517
T+++L N LS R L + + + + +F+ + + + L
Sbjct: 286 ---ETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL 342
Query: 518 SGVVPENL 525
Sbjct: 343 VPAREGEP 350
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-25
Identities = 63/341 (18%), Positives = 114/341 (33%), Gaps = 40/341 (11%)
Query: 109 IGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDL 168
+ + ++ + + S S N+ L++S N + KL+ L+L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 169 RANRFGGDIMHL--LSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVG 226
+N + L L ++ +DL+NN +L +G SI+ L+ + N++
Sbjct: 66 SSNV----LYETLDLESLSTLRTLDLNNNYVQ---ELLVG-----PSIETLHAANNNI-- 111
Query: 227 ELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQES 285
+ +NN + ++ L L N++ ++ A L S
Sbjct: 112 SRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAAS 167
Query: 286 SMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCT---IVDLSNNRL 342
S L L+L N + G + A LK ++LSSNKL+ + + L NN+L
Sbjct: 168 SDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226
Query: 343 S---GDLSRMQNWGNYVEDIHLSSNFLTGMVPNQT-SQFLRLTSFKVSNNSLEGDLPAVL 398
L QN +E L N S+ R+ +
Sbjct: 227 VLIEKALRFSQN----LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282
Query: 399 GTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFS 439
T P L H + + L ++
Sbjct: 283 CTVPT-------LGHYGAYCCEDLPAPFADRLIALGHHHHH 316
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 2e-22
Identities = 61/325 (18%), Positives = 127/325 (39%), Gaps = 30/325 (9%)
Query: 238 DNLEVFDASNNHLVGAIPS-FNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSL 296
+ ++ +++ L A+ S ++++ L L N LS + A L + L L+LS
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTK-LELLNLSS 67
Query: 297 NQLEG--PVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSG-DLSRMQNWG 353
N L + S+++ L+ ++L++N + L + +NN +S SR Q
Sbjct: 68 NVLYETLDLESLST--LRTLDLNNNYVQ-ELLV-GPSIETLHAANNNISRVSCSRGQG-- 121
Query: 354 NYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEG-DLPAVLGTYPELKVIDLSLN 412
++I+L++N +T + R+ + N ++ + + + L+ ++L N
Sbjct: 122 --KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Query: 413 HLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLS 472
+ + KL L+LS N + + E Q+ +T + L N L
Sbjct: 180 FIYD--VKGQVVFAKLKTLDLSSNKLAF-MG-PEFQSAAG--------VTWISLRNNKLV 227
Query: 473 GRLLPGISKFHNLVYLNLSNNKFE-GSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFP-D 530
+ + NL + +L N F G++ D + V+ + + +N
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286
Query: 531 SAFHPGNSLLTFPNSPSQQDVPDLT 555
+ H G +P + L
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALG 311
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 1e-18
Identities = 35/263 (13%), Positives = 78/263 (29%), Gaps = 19/263 (7%)
Query: 82 SFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLML 141
+ L L + ++NN + ++ S+E L ++N + S +
Sbjct: 72 ETLDLESLSTLRTLDLNNNY----VQELLVGPSIETLHAANNNISRVSCS---RGQGKKN 124
Query: 142 LNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGG-DIMHLLSQLGSVVHVDLSNNQFSGS 200
+ +++N G +++YLDL+ N + L + ++ H++L N
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-- 182
Query: 201 LDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFV 260
+ + ++ L++S N L + NN LV + F
Sbjct: 183 ---DVKGQVVFAKLKTLDLSSNKL--AFMG-PEFQSAAGVTWISLRNNKLVLIEKALRFS 236
Query: 261 FSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNK 320
+L L N S ++ ++ G
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFF---SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293
Query: 321 LSGSLPARVGHCTIVDLSNNRLS 343
++ L ++
Sbjct: 294 YCCEDLPAPFADRLIALGHHHHH 316
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 3e-24
Identities = 91/450 (20%), Positives = 157/450 (34%), Gaps = 84/450 (18%)
Query: 105 NITDIGSI-QSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSG-FGGLGK 162
+ + + + ++DLS N L + L++L L + + + F GL
Sbjct: 21 GLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80
Query: 163 LKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSF--ISSIQYLNIS 220
L L L N+F + L ++ + L+ L + F ++S++ L +
Sbjct: 81 LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD---GAVLSGNFFKPLTSLEMLVLR 137
Query: 221 ENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVA 280
+N++ ++ P +F N+ +L L N++
Sbjct: 138 DNNIK-KIQPA---SFFLNMR--------------------RFHVLDLTFNKVKSICEED 173
Query: 281 LLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNN 340
LL + L LS L+ + + L K P + T +DLS N
Sbjct: 174 LLNFQGKHFTLLRLSSITLQ---------DMNEYWLGWEKCG--NPFKNTSITTLDLSGN 222
Query: 341 RLSGDLSRM---QNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAV 397
+++ G ++ + LS+++ G T+FK +N L A
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMG-------SSFGHTNFKDPDNFTFKGLEA- 274
Query: 398 LGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQ 457
+K DLS + + L F T L L L+ N + +I +
Sbjct: 275 ----SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE------INKI----DDNAFW 320
Query: 458 NL-SLTSLDLAYNSLSGRLLPGI-SKFHNLVYLNLSNNKFEGSIP----DGLPNGLKEFN 511
L L L+L+ N L + + L L+LS N ++ GLPN LKE
Sbjct: 321 GLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPN-LKELA 377
Query: 512 VSFNNLSGVVPENLRNFPDSAFHPGNSLLT 541
+ N L V PD F SL
Sbjct: 378 LDTNQLKSV--------PDGIFDRLTSLQK 399
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 8e-15
Identities = 61/309 (19%), Positives = 115/309 (37%), Gaps = 47/309 (15%)
Query: 98 SNNQLMGNITDIGSIQ---SLEFLDLSHNLFHGLIPSGI-VSLKNLMLLNISSNSFEGTF 153
+ L G + + SLE L L N + P+ ++++ +L+++ N +
Sbjct: 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170
Query: 154 PSGFGGLGKL----------KYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDL 203
D+ G + + S+ +DLS N F S+
Sbjct: 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230
Query: 204 GLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSL 263
D+ + IQ L +S + +G F H DN + +
Sbjct: 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEAS-------------GV 277
Query: 264 RILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG-PVGSITSAT-LKKVNLSSNKL 321
+ L +++ +L ++ + L +L L+ N++ + T L K+NLS N L
Sbjct: 278 KTCDLSKSKIF-ALLKSVFSHFT-DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335
Query: 322 SGSLPARV----GHCTIVDLSNNRLS----GDLSRMQNWGNYVEDIHLSSNFLTGMVPNQ 373
S+ +R+ ++DLS N + + N ++++ L +N L VP+
Sbjct: 336 G-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN----LKELALDTNQLK-SVPDG 389
Query: 374 TSQFLRLTS 382
F RLTS
Sbjct: 390 I--FDRLTS 396
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 3/111 (2%)
Query: 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRF 173
LE L L+ N + + + L +L+ LN+S N F L KL+ LDL N
Sbjct: 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359
Query: 174 GGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSL 224
L ++ + L NQ S+ G+ D ++S+Q + + N
Sbjct: 360 RALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDR--LTSLQKIWLHTNPW 407
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 9e-23
Identities = 67/339 (19%), Positives = 125/339 (36%), Gaps = 51/339 (15%)
Query: 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRF 173
LDL N L S +L L ++ N P F L L+ L LR+NR
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92
Query: 174 GGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSF--ISSIQYLNISENSLVGELFPH 231
+ + + L ++ +D+S N+ L D F + +++ L + +N LV +
Sbjct: 93 KLIPLGVFTGLSNLTKLDISENKIV-----ILLDYMFQDLYNLKSLEVGDNDLV-YISHR 146
Query: 232 --DGMPYFDNLEVFDASNNHLVGAIP--SFNFVFSLRILRLGSNQLSGSLPVALLQESSM 287
G+ +LE +L +IP + + + L +LRL ++ ++ +
Sbjct: 147 AFSGLN---SLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLY- 200
Query: 288 MLSELDLSLNQL--EGPVGSITSATLKKVNLSSNKLSGSLPARV----GHCTIVDLSNNR 341
L L++S + L ++++ L+ ++P + ++LS N
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNP 259
Query: 342 LSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTY 401
+S + + L ++ RL ++ L P
Sbjct: 260 IS----------------TIEGSMLHELL--------RLQEIQLVGGQLAVVEPYAFRGL 295
Query: 402 PELKVIDLSLNHLNGFLLPSFFTS-TKLTDLNLSGNNFS 439
L+V+++S N L L S F S L L L N +
Sbjct: 296 NYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 3e-20
Identities = 64/331 (19%), Positives = 123/331 (37%), Gaps = 53/331 (16%)
Query: 212 SSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFV--FSLRILRLG 269
+ + L++ +N + + D F +LE + + N + A+ F F+LR L L
Sbjct: 32 TETRLLDLGKNRI--KTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLR 88
Query: 270 SNQLSGSLPVALLQESSMMLSELDLSLNQLEG-PVGSITSAT-LKKVNLSSNKLSGSLPA 327
SN+L +P+ + S L++LD+S N++ LK + + N L
Sbjct: 89 SNRLK-LIPLGVFTGLSN-LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV----- 141
Query: 328 RVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSN 387
+S+ SG L+ ++ + L LT + S L ++ +
Sbjct: 142 --------YISHRAFSG-LNSLE-------QLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185
Query: 388 NSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFS-------G 440
++ LKV+++S + P+ LT L+++ N +
Sbjct: 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR 245
Query: 441 PLP-LQEIQ--NNP----STGSTQNL-SLTSLDLAYNSLSGRLLPGI-SKFHNLVYLNLS 491
L L+ + NP L L + L L+ + P + L LN+S
Sbjct: 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVS 304
Query: 492 NNKFEGSIP----DGLPNGLKEFNVSFNNLS 518
N+ ++ + N L+ + N L+
Sbjct: 305 GNQLT-TLEESVFHSVGN-LETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 5e-18
Identities = 48/297 (16%), Positives = 100/297 (33%), Gaps = 36/297 (12%)
Query: 88 GLKMLCNVSVSNNQLMGNITDIGS-----IQSLEFLDLSHNLFHGLIPSGIVSLKNLMLL 142
L + ++ N ++ + + +L L L N + L NL L
Sbjct: 54 SFPHLEELELNENI----VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109
Query: 143 NISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLD 202
+IS N F L LK L++ N S L S+ + L +
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT---- 165
Query: 203 LGLGDSSFI--SSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFV 260
+ + + L + ++ L+V + S+ + +
Sbjct: 166 -SIPTEALSHLHGLIVLRLRHLNI--NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222
Query: 261 -FSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG-PVGSITSAT-LKKVNLS 317
+L L + L+ ++P ++ L L+LS N + + L+++ L
Sbjct: 223 GLNLTSLSITHCNLT-AVPYLAVRHLV-YLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280
Query: 318 SNKLSGSLPARV----GHCTIVDLSNNRLS----GDLSRMQNWGNYVEDIHLSSNFL 366
+L+ + + ++++S N+L+ + N +E + L SN L
Sbjct: 281 GGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN----LETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 3e-15
Identities = 45/281 (16%), Positives = 97/281 (34%), Gaps = 33/281 (11%)
Query: 262 SLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG-PVGSITSAT-LKKVNLSSN 319
R + + ++P + E LDL N+++ S L+++ L+ N
Sbjct: 12 QDRAVLCHRKRFV-AVPEGIPTE----TRLLDLGKNRIKTLNQDEFASFPHLEELELNEN 66
Query: 320 KLSGSLPARV----GHCTIVDLSNNRLS----GDLSRMQNWGNYVEDIHLSSNFLTGMVP 371
+S ++ + + L +NRL G + + N + + +S N + ++
Sbjct: 67 IVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN----LTKLDISENKIVILLD 121
Query: 372 NQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDL 431
L S +V +N L L+ + L +L + L L
Sbjct: 122 YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL 181
Query: 432 NLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLS 491
L + I++ + L L++++ + P NL L+++
Sbjct: 182 RLRHL------NINAIRDYSFKRLYR---LKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232
Query: 492 NNKFEGSIPDGLPNG---LKEFNVSFNNLSGVVPENLRNFP 529
+ ++P L+ N+S+N +S + L
Sbjct: 233 HCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 98.4 bits (245), Expect = 2e-21
Identities = 88/468 (18%), Positives = 159/468 (33%), Gaps = 63/468 (13%)
Query: 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSG-FGGLGKLKYLDLRANR 172
+ L LS N L I L L +L +S N + F L+YLD+ NR
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNR 111
Query: 173 FGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSL----VGEL 228
++ L H+DLS N F L + + ++ + +L +S + +
Sbjct: 112 LQNISCCPMASL---RHLDLSFNDFD-VLPVC-KEFGNLTKLTFLGLSAAKFRQLDLLPV 166
Query: 229 FPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMM 288
+L + H+ G + + +L L + S L + S
Sbjct: 167 AHLHLSCILLDLV-----SYHIKGGETESLQIPNTTVLHLVFHPNS--LFSVQVNMSVNA 219
Query: 289 LSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSR 348
L L LS +L L ++ L+ +L ++ +
Sbjct: 220 LGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL-------QHIETTWKCSVKLFQF 272
Query: 349 MQNWG---NYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELK 405
+ ++ ++ + L V N A+ + E+
Sbjct: 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332
Query: 406 VIDLSLNHLNGFLLPSFFTSTKLTDLNLSGN--------NFSGPLPLQE--IQNN----- 450
+ LS++ + + + T LN + N S LQ +Q N
Sbjct: 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF 392
Query: 451 -PSTGSTQNL-SLTSLDLAYNSL-SGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGL 507
T+N+ SL +LD++ NSL S + +++ LNLS+N GS+ LP +
Sbjct: 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKV 452
Query: 508 KEFNVSFNNLSGVVPEN----------------LRNFPDSAFHPGNSL 539
K ++ N + +P++ L++ PD F SL
Sbjct: 453 KVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSL 499
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 84.5 bits (209), Expect = 4e-17
Identities = 92/454 (20%), Positives = 163/454 (35%), Gaps = 45/454 (9%)
Query: 113 QSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSG--FGGLGKLKYLDLRA 170
Q LE+LD+SHN + + +L L++S N F+ P FG L KL +L L A
Sbjct: 100 QDLEYLDVSHNRLQNI-SCC--PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSA 155
Query: 171 NRF-GGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYL--NISENSLVGE 227
+F D++ + S + +DL + G L + N + V
Sbjct: 156 AKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM 215
Query: 228 LFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQE-SS 286
G N+++ D + L+ + +L + L + + V L Q
Sbjct: 216 SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP 275
Query: 287 MMLSELDLSLNQLEGPV----GSITSATLKKV---NLSSNKLSGSLPA---RVGHCTIVD 336
+ L++ + + + + LK + ++ + S A I
Sbjct: 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335
Query: 337 LSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPA 396
LS + + ++ + N T V S RL + + N L+ +
Sbjct: 336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFK 394
Query: 397 V---LGTYPELKVIDLSLNHLNGFLLPSFFT-STKLTDLNLSGNNFSG------PLPLQE 446
V L+ +D+SLN LN + + LNLS N +G P ++
Sbjct: 395 VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKV 454
Query: 447 --IQNNP----STGSTQNLSLTSLDLAYNSLSGRLLPG--ISKFHNLVYLNLSNNKFEGS 498
+ NN T +L L++A N L + +P + +L Y+ L +N ++ +
Sbjct: 455 LDLHNNRIMSIPKDVTHLQALQELNVASNQL--KSVPDGVFDRLTSLQYIWLHDNPWDCT 512
Query: 499 IPDGLPNGLKEFNVSFNNLSGVVPENLRNFPDSA 532
P L E+ + V PDSA
Sbjct: 513 CPGIR--YLSEWIN--KHSGVVRNSAGSVAPDSA 542
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 3e-14
Identities = 61/374 (16%), Positives = 129/374 (34%), Gaps = 31/374 (8%)
Query: 88 GLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSG---IVSLKNLMLLNI 144
L L + +S + D+ + L + +L I G + + N +L++
Sbjct: 144 NLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201
Query: 145 SSNSFEGTFPSGFGGLGKLKYLDLRANRFGG-------DIMHLLSQLGSVVHVDLSNNQF 197
+ + L +L L + + L++ ++++V L + +
Sbjct: 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261
Query: 198 SGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSF 257
+ + L + ++YLNI ++ + + L+ + + S
Sbjct: 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSK 321
Query: 258 NFVFS----LRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQL-EGPVGSITSAT-L 311
++S + I L + V SS + L+ + N + ++ L
Sbjct: 322 EALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS--FTFLNFTQNVFTDSVFQGCSTLKRL 379
Query: 312 KKVNLSSNKLSGSLPARVGHCT------IVDLSNNRL-SGDLSRMQNWGNYVEDIHLSSN 364
+ + L N L + +D+S N L S R W + ++LSSN
Sbjct: 380 QTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438
Query: 365 FLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFT 424
LTG V ++ + NN + +P + L+ ++++ N L F
Sbjct: 439 MLTGSVFRCLPP--KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDR 495
Query: 425 STKLTDLNLSGNNF 438
T L + L N +
Sbjct: 496 LTSLQYIWLHDNPW 509
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 8e-12
Identities = 42/275 (15%), Positives = 102/275 (37%), Gaps = 16/275 (5%)
Query: 55 RNWFGITCTNGYVTSIMLN--DMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDI--- 109
+ + ++ L + + + + +++ N + I
Sbjct: 239 MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT 298
Query: 110 ---GSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYL 166
+++SL + + +F + + + +S + +L
Sbjct: 299 YSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL 358
Query: 167 DLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVG 226
+ N F + S L + + L N + + +SS++ L++S NSL
Sbjct: 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNS 417
Query: 227 ELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESS 286
+ + +++ V + S+N L G++ +++L L +N++ S+P + +
Sbjct: 418 HAYDRT-CAWAESILVLNLSSNMLTGSVFR-CLPPKVKVLDLHNNRIM-SIPKDVTHLQA 474
Query: 287 MMLSELDLSLNQLEG-PVGSITS-ATLKKVNLSSN 319
L EL+++ NQL+ P G +L+ + L N
Sbjct: 475 --LQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 94.3 bits (234), Expect = 4e-20
Identities = 59/283 (20%), Positives = 98/283 (34%), Gaps = 33/283 (11%)
Query: 98 SNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGF 157
+ N+ + + + I L L+ L P + + +L I+ N+ + P
Sbjct: 45 NRNEAVSLLKEC-LINQFSELQLNRLNLSSL-PDNL--PPQITVLEITQNALI-SLPELP 99
Query: 158 GGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYL 217
L+YLD NR + L S+ H+D+ NNQ + L + ++Y+
Sbjct: 100 AS---LEYLDACDNR----LSTLPELPASLKHLDVDNNQLT-MLP------ELPALLEYI 145
Query: 218 NISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSL 277
N N L + P +LEV NN L +P SL L + +N L SL
Sbjct: 146 NADNNQL--TMLPEL----PTSLEVLSVRNNQL-TFLPE--LPESLEALDVSTNLLE-SL 195
Query: 278 P--VALLQESSMMLSELDLSLNQLEGPVGSITSAT-LKKVNLSSNKLSGSLPARVGHCTI 334
P S N++ +I S + L N LS + + T
Sbjct: 196 PAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255
Query: 335 V-DLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQ 376
D R+ +S Q + + + + SQ
Sbjct: 256 QPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQ 298
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 88.1 bits (218), Expect = 4e-18
Identities = 56/298 (18%), Positives = 101/298 (33%), Gaps = 38/298 (12%)
Query: 239 NLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQ 298
+ + N V + L+L LS SLP L + ++ L+++ N
Sbjct: 38 KQALPGENRNEAVSLLKECLIN-QFSELQLNRLNLS-SLPDNLPPQ----ITVLEITQNA 91
Query: 299 LEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVED 358
L S L+ ++ N+LS +LP +D+ NN+L+ + +E
Sbjct: 92 LISLPELPAS--LEYLDACDNRLS-TLPELPASLKHLDVDNNQLT----MLPELPALLEY 144
Query: 359 IHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFL 418
I+ +N LT M+P + L V NN L LP + + L+ +D+S N L
Sbjct: 145 INADNNQLT-MLPELPT---SLEVLSVRNNQLT-FLPELPES---LEALDVSTNLLES-- 194
Query: 419 LPSFFTS-----TKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSG 473
LP+ N + +P + I + ++ L N LS
Sbjct: 195 LPAVPVRNHHSEETEIFFRCRENRITH-IP-ENILSLDP--------TCTIILEDNPLSS 244
Query: 474 RLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFPDS 531
R+ +S+ + F S + ++ +
Sbjct: 245 RIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHA 302
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 70.8 bits (173), Expect = 9e-13
Identities = 66/355 (18%), Positives = 117/355 (32%), Gaps = 44/355 (12%)
Query: 72 LNDMGLVGNFSFPTIIG--LKMLCNVSVSNNQLMGNITDI-GSIQSLEFLDLSHNLFHGL 128
LN + L S P + + +L ++ N L + SLE+LD N L
Sbjct: 66 LNRLNLS---SLPDNLPPQITVL---EITQNAL----ISLPELPASLEYLDACDNRLSTL 115
Query: 129 IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVV 188
P SLK+ L++ +N P L+Y++ N+ + L S+
Sbjct: 116 -PELPASLKH---LDVDNNQLT-MLPE---LPALLEYINADNNQ----LTMLPELPTSLE 163
Query: 189 HVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLE----VFD 244
+ + NNQ + L S++ L++S N L E P + E F
Sbjct: 164 VLSVRNNQLT-FL------PELPESLEALDVSTNLL--ESLP-AVPVRNHHSEETEIFFR 213
Query: 245 ASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVG 304
N + + + + L N LS + +L Q+++ + G
Sbjct: 214 CRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA--QPDYHGPRIYFSMSDG 271
Query: 305 SITSATLKKVNLSSNKLSGSLPARVG---HCTIVDLSNNRLSGDLSRMQNWGNYVEDIHL 361
+ + + + + V H + N S L R+ + +
Sbjct: 272 QQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGF 331
Query: 362 SSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNG 416
+ S LR SF V+ ++ E V T+ L+ L G
Sbjct: 332 REQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEG 386
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 7e-06
Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 16/121 (13%)
Query: 408 DLSLNHLNGFLLPSFFTSTKLTDLNLSGNNF-SGPLPLQEIQNNPSTGSTQNLSLTSLDL 466
+ N ++G F K L G N L+E N + L L
Sbjct: 16 NSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN---------QFSELQL 66
Query: 467 AYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLR 526
+LS L + + L ++ N S+P+ + L+ + N LS +PE
Sbjct: 67 NRLNLS-SLPDNLPP--QITVLEITQNALI-SLPELPAS-LEYLDACDNRLS-TLPELPA 120
Query: 527 N 527
+
Sbjct: 121 S 121
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 90.7 bits (225), Expect = 6e-20
Identities = 47/281 (16%), Positives = 104/281 (37%), Gaps = 29/281 (10%)
Query: 256 SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVN 315
+ + L+ + ++ + + L + + + L G + + + L+++
Sbjct: 42 GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101
Query: 316 LSSNKLSGSLPARVGHCT-----IVDLSNNRLSG---DLSRMQNWGN-YVEDIHLSSNFL 366
L + +++G+ P + T I++L N + L+ +Q W ++ + ++
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161
Query: 367 TGMVPNQTSQFLRLTSFKVSNNSLEGDLP----AVLGTYPELKVIDLSLNHLN---GFLL 419
Q F L++ +S+N G+ +P L+V+ L + G
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221
Query: 420 PSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGI 479
+L L+LS N+ L SL+L++ L ++ G+
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ--------LNSLNLSFTGLK-QVPKGL 272
Query: 480 SKFHNLVYLNLSNNKFEG-SIPDGLPNGLKEFNVSFNNLSG 519
L L+LS N+ + PD LP + ++ N
Sbjct: 273 --PAKLSVLDLSYNRLDRNPSPDELPQ-VGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 86.9 bits (215), Expect = 1e-18
Identities = 58/298 (19%), Positives = 104/298 (34%), Gaps = 38/298 (12%)
Query: 157 FGGLGKLKYLDLRANRFGGDIMHL-LSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQ 215
+GG L+YL R + + + S+ + + + + G IS +Q
Sbjct: 39 YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98
Query: 216 YLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVF-----SLRILRLGS 270
L + + G P +L + + N + L++L +
Sbjct: 99 ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158
Query: 271 NQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSA------TLKKVNLSSNKLSGS 324
+ ++ LS LDLS N G G I++ TL+ + L + +
Sbjct: 159 AHSL-NFSCEQVRVFP-ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM--- 213
Query: 325 LPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFL-RLTSF 383
SG S + ++ + LS N L + + +L S
Sbjct: 214 ---------------ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258
Query: 384 KVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGP 441
+S L+ +P L +L V+DLS N L+ PS ++ +L+L GN F
Sbjct: 259 NLSFTGLKQ-VPKGLP--AKLSVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 6e-17
Identities = 59/321 (18%), Positives = 100/321 (31%), Gaps = 64/321 (19%)
Query: 191 DLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHL 250
S +D F I+ L++ ++ P + L V S
Sbjct: 42 GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA--LRVLGISG--- 96
Query: 251 VGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITS-- 308
L+ L L + +++G+ P LL+ + L+ L+L +
Sbjct: 97 ------------LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144
Query: 309 ----ATLKKVNLSSNKLSGSLPARVGHC---TIVDLSNNRLSGDLSRMQNWGNYVEDIHL 361
LK ++++ +V + +DLS+N G+ L
Sbjct: 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE-------------RGL 191
Query: 362 SSNFLTGMVPNQTSQFLRLTSFKVSNN---SLEGDLPAVLGTYPELKVIDLSLNHLNGFL 418
S P L + N + G A+ +L+ +DLS N L
Sbjct: 192 ISALCPLKFPT-------LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244
Query: 419 LPSFFT-STKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLP 477
++L LNLS +P L+ LDL+YN L P
Sbjct: 245 GAPSCDWPSQLNSLNLSFTGLKQ-VPKGLPAK-----------LSVLDLSYNRLDR--NP 290
Query: 478 GISKFHNLVYLNLSNNKFEGS 498
+ + L+L N F S
Sbjct: 291 SPDELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 76.5 bits (188), Expect = 3e-15
Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 14/229 (6%)
Query: 311 LKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSR---MQNWGNYVEDIHLSSNFLT 367
LK+V+ ++ + + + + R+ + + ++++ L + +T
Sbjct: 49 LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108
Query: 368 GMVPNQTSQF--LRLTSFKVSNNSLEGDLPAVLGTY----PELKVIDLSLNHLNGFLLPS 421
G P + L + N S + P LKV+ ++ H F
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168
Query: 422 FFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISK 481
L+ L+LS N G L + Q L+L + + + SG +
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM--ETPSGVCSALAAA 226
Query: 482 FHNLVYLNLSNNKFEGSIPDGL---PNGLKEFNVSFNNLSGVVPENLRN 527
L L+LS+N + P+ L N+SF L V
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK 275
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 5e-14
Identities = 39/221 (17%), Positives = 70/221 (31%), Gaps = 43/221 (19%)
Query: 67 VTSIMLNDMGLVGNFSFPTIIGLKMLCNV---SVSNNQLMG-NITDIGSIQSLEFLDLSH 122
+ + L ++ ++ + + + S++ + + + +L LDLS
Sbjct: 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182
Query: 123 N-------LFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGG 175
N L L P +L+ L L N + G + +L+ LDL
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL------- 235
Query: 176 DIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMP 235
S+N + + S + LN+S L ++
Sbjct: 236 -----------------SHNSLRDAAGAPS--CDWPSQLNSLNLSFTGLK-QVPK----G 271
Query: 236 YFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGS 276
L V D S N L PS + + + L L N S
Sbjct: 272 LPAKLSVLDLSYNRLDR-NPSPDELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 3e-09
Identities = 28/180 (15%), Positives = 52/180 (28%), Gaps = 17/180 (9%)
Query: 358 DIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGF 417
D T ++ + + + L + + ++ + L G L + L+ + L + G
Sbjct: 53 DTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGAL--RVLGISGLQELTLENLEVTGT 110
Query: 418 LLPSFF--TSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRL 475
P T L LNL +++ L L +A
Sbjct: 111 APPPLLEATGPDLNILNLRNVSWATRDAWL-----AELQQWLKPGLKVLSIAQAHSLNFS 165
Query: 476 LPGISKFHNLVYLNLSNNKFEGSI-------PDGLPNGLKEFNVSFNNLSGVVPENLRNF 528
+ F L L+LS+N G P P L+ + +
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT-LQVLALRNAGMETPSGVCSALA 224
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 2e-19
Identities = 62/346 (17%), Positives = 120/346 (34%), Gaps = 71/346 (20%)
Query: 114 SLEFLDLSHNLFHGL--IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRAN 171
L + S GL +P + + LL++ +N F L L L L N
Sbjct: 32 HLRVVQCSDL---GLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 172 RFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLV---GEL 228
+ + L + + LS NQ L + ++Q L + EN + +
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM----P-KTLQELRVHENEITKVRKSV 140
Query: 229 FPHDGMPYFDNLEVFDASNNHL-VGAIPS--FNFVFSLRILRLGSNQLSGSLPVALLQES 285
F +G+ + V + N L I + F + L +R+ ++ ++P L
Sbjct: 141 F--NGLN---QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPS- 193
Query: 286 SMMLSELDLSLNQLEGPVGSITSAT------LKKVNLSSNKLSGSLPARV----GHCTIV 335
L+EL L N++ + +A+ L K+ LS N +S ++ H +
Sbjct: 194 ---LTELHLDGNKIT----KVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLREL 245
Query: 336 DLSNNRLS---GDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEG 392
L+NN+L G L+ + ++ ++L +N ++ + +N
Sbjct: 246 HLNNNKLVKVPGGLADHKY----IQVVYLHNNNIS----------------AIGSNDFCP 285
Query: 393 DLPAVLGTYPELKVIDLSLNHLNGFLLPS--FFTSTKLTDLNLSGN 436
P + L N + + + F + L
Sbjct: 286 --PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 3e-17
Identities = 52/312 (16%), Positives = 98/312 (31%), Gaps = 59/312 (18%)
Query: 212 SSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP--SFNFVFSLRILRLG 269
L++ N + NL NN + I +F + L L L
Sbjct: 52 PDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLS 108
Query: 270 SNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSAT------LKKVNLSSNKLSG 323
NQL LP + + L EL + N++ + + + V L +N L
Sbjct: 109 KNQLK-ELPEKMPKT----LQELRVHENEIT----KVRKSVFNGLNQMIVVELGTNPL-- 157
Query: 324 SLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSF 383
+ N G + ++ I ++ +T +P LT
Sbjct: 158 ---------KSSGIENGAFQG-MKKLSY-------IRIADTNIT-TIPQGL--PPSLTEL 197
Query: 384 KVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLP 443
+ N + A L L + LS N ++ S + L +L+L+ N
Sbjct: 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK------ 251
Query: 444 LQEIQNNPSTGSTQNLSLTSLDLAYNSLSG------RLLPGISKFHNLVYLNLSNNKFE- 496
L ++ G + + + L N++S +K + ++L +N +
Sbjct: 252 LVKVPG----GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307
Query: 497 GSIPDGLPNGLK 508
I +
Sbjct: 308 WEIQPSTFRCVY 319
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 3e-13
Identities = 44/250 (17%), Positives = 90/250 (36%), Gaps = 34/250 (13%)
Query: 88 GLKMLCNVSVSNNQLMGNITDI--GSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNIS 145
L L + +S NQL ++ ++L+ L + N + S L ++++ +
Sbjct: 98 PLVKLERLYLSKNQL----KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELG 153
Query: 146 SNSF-EGTFPSG-FGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDL 203
+N +G F G+ KL Y+ + L L + L N+ +
Sbjct: 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSL---TELHLDGNKIT----- 205
Query: 204 GLGDSSF--ISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPS-FNFV 260
+ +S ++++ L +S NS+ + + +L +NN LV +P
Sbjct: 206 KVDAASLKGLNNLAKLGLSFNSI--SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH 262
Query: 261 FSLRILRLGSNQLS----GSLPVALLQESSMMLSELDLSLNQLEGPVGSITSAT------ 310
++++ L +N +S S + L N ++ I +T
Sbjct: 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ--YWEIQPSTFRCVYV 320
Query: 311 LKKVNLSSNK 320
V L + K
Sbjct: 321 RAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 3e-12
Identities = 37/203 (18%), Positives = 71/203 (34%), Gaps = 26/203 (12%)
Query: 333 TIVDLSNNRLS---GDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNS 389
+V S+ L DL + L +N +T + L + + NN
Sbjct: 34 RVVQCSDLGLEKVPKDLPP------DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87
Query: 390 LEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQN 449
+ P +L+ + LS N L L + L +L + N + +++
Sbjct: 88 ISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMPKT--LQELRVHENE------ITKVRK 138
Query: 450 NPSTGSTQNL-SLTSLDLAYNSLSGRLLPG--ISKFHNLVYLNLSNNKFEGSIPDGLPNG 506
L + ++L N L + L Y+ +++ +IP GLP
Sbjct: 139 ----SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPS 193
Query: 507 LKEFNVSFNNLSGVVPENLRNFP 529
L E ++ N ++ V +L+
Sbjct: 194 LTELHLDGNKITKVDAASLKGLN 216
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 9e-17
Identities = 65/394 (16%), Positives = 117/394 (29%), Gaps = 109/394 (27%)
Query: 114 SLEFLDLSHNLFHGL--IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRAN 171
L + S GL +P I + LL++ +N F GL L L L N
Sbjct: 34 HLRVVQCSDL---GLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN 88
Query: 172 RFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLV---GEL 228
+ S L + + +S N + L SS+ L I +N + +
Sbjct: 89 KISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL----P-SSLVELRIHDNRIRKVPKGV 142
Query: 229 FPHDGMPYFDNLEVFDASNNHL-VGAIPSFNFV-FSLRILRLGSNQLSGSLPVALLQESS 286
F G+ N+ + N L F L LR+ +L+ +P L +
Sbjct: 143 F--SGLR---NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPET-- 194
Query: 287 MMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDL 346
L+EL L N+++ +I L S + L +N++
Sbjct: 195 --LNELHLDHNKIQ----AIELEDLL--RYSK-------------LYRLGLGHNQIR--- 230
Query: 347 SRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKV 406
+ + L+ + P L+
Sbjct: 231 -------------MIENGSLSFL--------------------------------PTLRE 245
Query: 407 IDLSLNHLNGFLLPS-FFTSTKLTDLNLSGNNFSGPLPLQEIQNN---PSTGSTQNLSLT 462
+ L N L+ +P+ L + L NN + ++ N P +
Sbjct: 246 LHLDNNKLS--RVPAGLPDLKLLQVVYLHTNN------ITKVGVNDFCPVGFGVKRAYYN 297
Query: 463 SLDLAYNSLSGRLLPG--ISKFHNLVYLNLSNNK 494
+ L N + + + + + N K
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 42/229 (18%), Positives = 84/229 (36%), Gaps = 32/229 (13%)
Query: 311 LKKVNLSSNKLSGSLPARV-GHCTIVDLSNNRLS----GDLSRMQNWGNYVEDIHLSSNF 365
L+ V S L ++P + T++DL NN +S D +Q+ + + L +N
Sbjct: 35 LRVVQCSDLGLK-AVPKEISPDTTLLDLQNNDISELRKDDFKGLQH----LYALVLVNNK 89
Query: 366 LTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTS 425
++ + S +L +S N L ++P L + + N + F
Sbjct: 90 ISKIHEKAFSPLRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGL 146
Query: 426 TKLTDLNLSGNNFSGPLPLQEIQNNP-STGSTQNLSLTSLDLAYNSLSGRLLPGISKFHN 484
+ + + GN ++N+ G+ L L L ++ L+ + +
Sbjct: 147 RNMNCIEMGGNP---------LENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PET 194
Query: 485 LVYLNLSNNKFEGSIPD----GLPNGLKEFNVSFNNLSGVVPENLRNFP 529
L L+L +NK + +I L + N + + +L P
Sbjct: 195 LNELHLDHNKIQ-AIELEDLLRYSK-LYRLGLGHNQIRMIENGSLSFLP 241
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 15/128 (11%)
Query: 403 ELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLT 462
L+V+ S L +P S T L+L N+ + E++ + G L
Sbjct: 34 HLRVVQCSDLGLKA--VPKEI-SPDTTLLDLQNND------ISELRKDDFKGLQH---LY 81
Query: 463 SLDLAYNSLSGRLLPGI-SKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVV 521
+L L N +S ++ S L L +S N IP LP+ L E + N + V
Sbjct: 82 ALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVP 139
Query: 522 PENLRNFP 529
Sbjct: 140 KGVFSGLR 147
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 2e-16
Identities = 47/314 (14%), Positives = 86/314 (27%), Gaps = 31/314 (9%)
Query: 209 SFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNF--VFSLRIL 266
+ + N+ +N ++ + L L
Sbjct: 27 PYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVAL 86
Query: 267 RLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSAT-LKKVNLSSNKLSGSL 325
L S L P + S L + + L ++ L+ + L+ N L +L
Sbjct: 87 ELRSVPLP-QFPDQAFRLSH--LQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-AL 142
Query: 326 PARVGHCT---IVDLS-NNRLS------GDLSRMQNWGNYV--EDIHLSSNFLTGMVPNQ 373
PA + + + L+ V + + L + +P
Sbjct: 143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPAS 201
Query: 374 TSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNL 433
+ L S K+ N+ L L + P+L+ +DL P F L L L
Sbjct: 202 IANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260
Query: 434 SGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNN 493
+ LP L LDL RL I++ + + +
Sbjct: 261 KDCSNLLTLP-------LDIHRLTQL--EKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311
Query: 494 KFEGSIPDGLPNGL 507
+ + P
Sbjct: 312 -LQAQLDQHRPVAR 324
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 8e-16
Identities = 47/334 (14%), Positives = 92/334 (27%), Gaps = 64/334 (19%)
Query: 212 SSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSN 271
S + L ++ + HD + + D + H + N + +I
Sbjct: 12 SGRENLYFQGSTALRPY--HDVLSQWQRHYNADRNRWHSAWRQANSN---NPQIETRTGR 66
Query: 272 QLSGSLPVALLQESSMMLSELDLSLNQLE---GPVGSITSATLKKVNLSSNKLSGSLPAR 328
L + L + L+L L ++ L+ + + + L LP
Sbjct: 67 ALK-ATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSH--LQHMTIDAAGLM-ELPDT 122
Query: 329 VGHCT---IVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKV 385
+ + L+ N L +P + RL +
Sbjct: 123 MQQFAGLETLTLARNPLRA-------------------------LPASIASLNRLRELSI 157
Query: 386 SNNSLEGDLPAVLGTYPE---------LKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGN 436
+LP L + L+ + L + L S L L + +
Sbjct: 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS 216
Query: 437 NFSGPLPLQEIQNNPSTGSTQNL-SLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKF 495
S L P+ +L L LDL + P L L L +
Sbjct: 217 PLSA-LG-------PAIH---HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265
Query: 496 EGSIPDGLPN--GLKEFNVSFNNLSGVVPENLRN 527
++P + L++ ++ +P +
Sbjct: 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 4e-15
Identities = 41/291 (14%), Positives = 79/291 (27%), Gaps = 31/291 (10%)
Query: 71 MLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQS--LEFLDLSHNLFHGL 128
+ S + + L + L+L
Sbjct: 37 RHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQF 96
Query: 129 IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHL---LSQLG 185
P L +L + I + P L+ L L N + L ++ L
Sbjct: 97 -PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP----LRALPASIASLN 150
Query: 186 SVVHVDLSNNQFSGSLDLGLGDSSFISSI------QYLNISENSLVGELFPHDGMPYFDN 239
+ + + L L + Q L + + P + N
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI--RSLP-ASIANLQN 207
Query: 240 LEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLS-LNQ 298
L+ N+ L P+ + + L L L + P + L L L +
Sbjct: 208 LKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP--LKRLILKDCSN 265
Query: 299 LEG-P--VGSITSATLKKVNLSSNKLSGSLPARVGHCT---IVDLSNNRLS 343
L P + +T L+K++L LP+ + I+ + + +
Sbjct: 266 LLTLPLDIHRLTQ--LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 8e-08
Identities = 19/106 (17%), Positives = 30/106 (28%), Gaps = 3/106 (2%)
Query: 84 PTIIGLKMLCNVSVSNNQLMGNI-TDIGSIQSLEFLDLSH-NLFHGLIPSGIVSLKNLML 141
P I L L + + + N G L+ L L + L P I L L
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL-PLDIHRLTQLEK 281
Query: 142 LNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSV 187
L++ PS L + + + H +
Sbjct: 282 LDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 3e-16
Identities = 60/313 (19%), Positives = 101/313 (32%), Gaps = 48/313 (15%)
Query: 129 IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVV 188
IPSG+ + L++S+N S L+ L L +N S LGS+
Sbjct: 46 IPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103
Query: 189 HVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNN 248
H+DLS N S +L +SS+ +LN+ N L + L++ N
Sbjct: 104 HLDLSYNYLS-NLSSSWFKP--LSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNM 159
Query: 249 HLVGAIPS--FNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSI 306
I F + L L + ++ L S L+ +S L L + Q
Sbjct: 160 DTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQN-VSHLILHMKQH------- 210
Query: 307 TSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFL 366
L ++L + L + L
Sbjct: 211 ------------ILLLEIFVDVTSSVECLELRDTDLD----------------TFHFSEL 242
Query: 367 TGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTS- 425
+ N + + K+++ SL + +L L ++ S N L + F
Sbjct: 243 STGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRL 300
Query: 426 TKLTDLNLSGNNF 438
T L + L N +
Sbjct: 301 TSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 9e-13
Identities = 48/296 (16%), Positives = 106/296 (35%), Gaps = 62/296 (20%)
Query: 244 DASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG-P 302
S+ L +IPS +++ L L +N+++ + + LQ L L L+ N +
Sbjct: 37 KGSSGSL-NSIPS-GLTEAVKSLDLSNNRIT-YISNSDLQRCVN-LQALVLTSNGINTIE 92
Query: 303 VGSITSAT-LKKVNLSSNKLSGSLPARV----GHCTIVDLSNNRLS--GDLSRMQNWGNY 355
S +S L+ ++LS N LS +L + T ++L N G+ S +
Sbjct: 93 EDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK- 150
Query: 356 VEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLN 415
++ + + + + + F LT L+ +++ + L
Sbjct: 151 LQILRVGNMDTFTKIQRKD--FAGLTF---------------------LEELEIDASDLQ 187
Query: 416 GFLLPSFFTSTKLTDLNLSGNNFS-----------------------GPLPLQEIQNNPS 452
+ S + ++ L L E+ +
Sbjct: 188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247
Query: 453 TGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLK 508
+ + ++ + SL +++ +++ L+ L S N+ + S+PDG+ + L
Sbjct: 248 NSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLT 301
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 7e-10
Identities = 50/247 (20%), Positives = 84/247 (34%), Gaps = 46/247 (18%)
Query: 88 GLKMLCNVSVSNNQLMGNITDI-----GSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLL 142
L + +++N I I S+ SLE LDLS+N L S L +L L
Sbjct: 74 RCVNLQALVLTSNG----INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 129
Query: 143 NISSNSFEGTFPSG--------------------------FGGLGKLKYLDLRANRFGGD 176
N+ N ++ + F GL L+ L++ A+
Sbjct: 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189
Query: 177 IMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPH----- 231
L + +V H+ L Q L D + SS++ L + + L F
Sbjct: 190 EPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVT--SSVECLELRDTDLDTFHFSELSTGE 246
Query: 232 -DGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLS 290
+ + ++ L + N + L L NQL S+P + + L
Sbjct: 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLT-SLQ 304
Query: 291 ELDLSLN 297
++ L N
Sbjct: 305 KIWLHTN 311
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 8e-16
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 14/127 (11%)
Query: 704 DVLNACSPEKLAGDLHLFDVSLMFTAEELSHA-----PAEVIGRSCHGTLYKATLDSGSI 758
DV PE G L F + EL A ++GR G +YK L G++
Sbjct: 3 DVPAEEDPEVHLGQLKRF------SLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTL 56
Query: 759 LAVKRLREGIAKG-KKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQSL 817
+AVKRL+E +G + +F EV+ + H NL+ L+G+ E+L++ Y+ S+
Sbjct: 57 VAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC--MTPTERLLVYPYMANGSV 114
Query: 818 AVYLQGK 824
A L+ +
Sbjct: 115 ASCLRER 121
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 9e-16
Identities = 53/240 (22%), Positives = 94/240 (39%), Gaps = 21/240 (8%)
Query: 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANR- 172
S + + +P+GI + L + SN + F L +L L L +N
Sbjct: 8 SGTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64
Query: 173 -FGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPH 231
F G S+ ++DLS N ++ + + +++L+ ++L ++
Sbjct: 65 SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMS---SNFLGLEQLEHLDFQHSNLK-QMSEF 119
Query: 232 DGMPYFDNLEVFDASNNHLVGAIPS--FNFVFSLRILRLGSNQLSGSLPVALLQESSMML 289
NL D S+ H + FN + SL +L++ N + + E L
Sbjct: 120 SVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-NL 177
Query: 290 SELDLSLNQLEG-PVGSITSAT-LKKVNLSSNKLSGSLPARVGHC----TIVDLSNNRLS 343
+ LDLS QLE + S + L+ +N+S N SL C ++D S N +
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM 236
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 44/216 (20%), Positives = 88/216 (40%), Gaps = 35/216 (16%)
Query: 88 GLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGI-VSLKNLMLLNISS 146
G L + +S N ++ ++ ++ LE LD H+ + + +SL+NL+ L+IS
Sbjct: 76 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135
Query: 147 NSFEGTFPSGFGGLGKLKYLDLRANRFGGDIM-HLLSQLGSVVHVDLSNNQFSGSLDLGL 205
F F GL L+ L + N F + + + ++L ++ +DLS Q
Sbjct: 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE------- 188
Query: 206 GDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPS--FNFVFSL 263
+S + +L+V + S+N+ ++ + + + SL
Sbjct: 189 ------------QLSPTAFNS----------LSSLQVLNMSHNNFF-SLDTFPYKCLNSL 225
Query: 264 RILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQL 299
++L N + + LQ L+ L+L+ N
Sbjct: 226 QVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 7e-14
Identities = 55/308 (17%), Positives = 97/308 (31%), Gaps = 51/308 (16%)
Query: 237 FDNLEVFDASNNHLVGAIPS-FNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLS 295
+ + +N L F+ + L L L SN LS + + L LDLS
Sbjct: 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86
Query: 296 LNQLEG-PVGSITSATLKKVNLSSNKLSGSLPARV----GHCTIVDLSNNRLSGDLSRMQ 350
N + + L+ ++ + L V + +D+S+
Sbjct: 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR------- 139
Query: 351 NWGNYVEDIHLSSNFLTGMVPNQTS-QFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDL 409
+ G+ +S + L++ N+ E LP + L +DL
Sbjct: 140 ---------VAFNGIFNGL----SSLEVLKMAG----NSFQENFLPDIFTELRNLTFLDL 182
Query: 410 SLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYN 469
S L +F + + L LN+S NN + P SL LD + N
Sbjct: 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNN------FFSLDTFPYKCLN---SLQVLDYSLN 233
Query: 470 SLSGRLLPGI--SKFHNLVYLNLSNNKFE---GSIPDGLPNGLKEFNVSFNNLSGVV--- 521
+ +L +LNL+ N F +K+ + +
Sbjct: 234 HIM-TSKKQELQHFPSSLAFLNLTQNDFACTCEHQS--FLQWIKDQRQLLVEVERMECAT 290
Query: 522 PENLRNFP 529
P + + P
Sbjct: 291 PSDKQGMP 298
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 43/238 (18%), Positives = 86/238 (36%), Gaps = 56/238 (23%)
Query: 312 KKVNLSSNKLSGSLPARV-GHCTIVDLSNNRLS----GDLSRMQNWGNYVEDIHLSSNFL 366
++ +S L+ S+P + T ++L +N+L G ++ + + LSSN L
Sbjct: 10 TEIRCNSKGLT-SVPTGIPSSATRLELESNKLQSLPHGVFDKLTQ----LTKLSLSSNGL 64
Query: 367 TGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTST 426
+ + TS LK +DLS N + + +F
Sbjct: 65 S-FKGCCSQSDFGTTS---------------------LKYLDLSFNGVIT-MSSNFLGLE 101
Query: 427 KLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNL-SLTSLDLAYNSLSGRLLPGI-SKFHN 484
+L L+ +N ++ +L +L LD+++ GI + +
Sbjct: 102 QLEHLDFQHSN---------LKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSS 151
Query: 485 LVYLNLSNNKFEGSIPDGLPNG---LKEFNVSFNNLSGVVPENLRNFPDSAFHPGNSL 539
L L ++ N F+ + + L ++S L + +AF+ +SL
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL--------SPTAFNSLSSL 201
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 88 GLKMLCNVSVSNNQLMGNITD--IGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNIS 145
GL L + ++ N N +++L FLDLS L P+ SL +L +LN+S
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207
Query: 146 SNSFEGTFPSGFGGLGKLKYLDLRANRF----GGDIMHLLSQLGSVVHVDLSNNQFS 198
N+F + L L+ LD N ++ H S L ++L+ N F+
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL---AFLNLTQNDFA 261
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 4e-15
Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 34/243 (13%)
Query: 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRF 173
+ +L+L N + L +L +L + NS F GL L L+L N
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW- 134
Query: 174 GGDIMHL----LSQLGSVVHVDLSNNQFSGSLDLGLGDSSF--ISSIQYLNISEN----S 223
+ + L + + L NN + +F + S+ L++ E
Sbjct: 135 ---LTVIPSGAFEYLSKLRELWLRNNPIE-----SIPSYAFNRVPSLMRLDLGELKKLEY 186
Query: 224 LVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQ 283
+ F +G+ NL+ + ++ +P+ + L L + N +
Sbjct: 187 ISEGAF--EGLF---NLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFP-EIRPGSFH 239
Query: 284 ESSMMLSELDLSLNQLEG-PVGSITSAT-LKKVNLSSNKLSGSLPARV----GHCTIVDL 337
L +L + +Q+ + L ++NL+ N LS SLP + + + L
Sbjct: 240 -GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHL 297
Query: 338 SNN 340
+N
Sbjct: 298 HHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 4e-14
Identities = 47/260 (18%), Positives = 89/260 (34%), Gaps = 44/260 (16%)
Query: 308 SATLKKVNLSSNKLSGSLPARV-GHCTIVDLSNNRLS----GDLSRMQNWGNYVEDIHLS 362
S KV + LS +P + + ++L N + + + +E + L
Sbjct: 53 SNQFSKVVCTRRGLS-EVPQGIPSNTRYLNLMENNIQMIQADTFRHLHH----LEVLQLG 107
Query: 363 SNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSF 422
N + + + L + ++ +N L +L+ + L N + +
Sbjct: 108 RNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYA 166
Query: 423 FTS-TKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNL-SLTSLDLAYNSLSGRLLPGIS 480
F L L+L L+ I G+ + L +L L+L ++ +P ++
Sbjct: 167 FNRVPSLMRLDLGELK-----KLEYISE----GAFEGLFNLKYLNLGMCNIKD--MPNLT 215
Query: 481 KFHNLVYLNLSNNKFEGSIPDGLPNG---LKEFNVSFNNLSGVVPE-------------- 523
L L +S N F I G +G LK+ V + +S +
Sbjct: 216 PLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274
Query: 524 --NLRNFPDSAFHPGNSLLT 541
NL + P F P L+
Sbjct: 275 HNNLSSLPHDLFTPLRYLVE 294
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 8e-10
Identities = 59/273 (21%), Positives = 95/273 (34%), Gaps = 58/273 (21%)
Query: 212 SSIQYLNISEN---SLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP--SFNFVFSLRIL 266
S+ +YLN+ EN + + F H +LEV N + I +FN + SL L
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRH-----LHHLEVLQLGRNSI-RQIEVGAFNGLASLNTL 128
Query: 267 RLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKK-VNLSSNKLSGSL 325
L N L+ +P + S L EL L N +E SI S + +L L
Sbjct: 129 ELFDNWLT-VIPSGAFEYLSK-LRELWLRNNPIE----SIPSYAFNRVPSLMRLDLG--- 179
Query: 326 PARVGHCTIVDLSNNRLS----GDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLT 381
+L G + N ++ ++L + +PN L
Sbjct: 180 ------------ELKKLEYISEGAFEGLFN----LKYLNLGMCNIK-DMPN----LTPLV 218
Query: 382 SFKV---SNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNF 438
+ S N P LK + + + ++ +F L +LNL+ NN
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN- 277
Query: 439 SGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSL 471
L + ++ T L L L +N
Sbjct: 278 -----LSSLPHDLFTPLR---YLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Query: 88 GLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSN 147
GL L +++ + ++ ++ + LE L++S N F + P L +L L + ++
Sbjct: 194 GLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252
Query: 148 SFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQF 197
+ F GL L L+L N L + L +V + L +N +
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 6e-08
Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 21/169 (12%)
Query: 88 GLKMLCNVSVSNNQLMGNITDIGS-----IQSLEFLDLSH-NLFHGLIPSGIVSLKNLML 141
L L + + NN I I S + SL LDL + L NL
Sbjct: 145 YLSKLRELWLRNNP----IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200
Query: 142 LNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSL 201
LN+ + L L+ L++ N F L S+ + + N+Q S
Sbjct: 201 LNLGMCNI--KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS--- 255
Query: 202 DLGLGDSSF--ISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNN 248
+ ++F ++S+ LN++ N+L PHD L +N
Sbjct: 256 --LIERNAFDGLASLVELNLAHNNL--SSLPHDLFTPLRYLVELHLHHN 300
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 4e-15
Identities = 72/443 (16%), Positives = 136/443 (30%), Gaps = 93/443 (20%)
Query: 113 QSLEFLDLSHNLFHGLIPSGIVSL----KNLMLLNISSNSFEGT----FPSGFGGLGKLK 164
++ LD+ L + L + ++ + S L
Sbjct: 3 LDIQSLDIQCE---ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59
Query: 165 YLDLRANRFGGDIMHLLSQL-----GSVVHVDLSNNQFS--GSLDLGLGDSSFISSIQYL 217
L+LR+N G +H + Q + + L N + G L + + ++Q L
Sbjct: 60 ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT-LPTLQEL 118
Query: 218 NISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLS--G 275
++S+N L DA L + L L+L LS
Sbjct: 119 HLSDNLLG------------------DAGLQLLCEGLLDPQC--RLEKLQLEYCSLSAAS 158
Query: 276 SLPVALLQESSMMLSELDLSLNQLEGPVGSI-------TSATLKKVNLSSNKLS----GS 324
P+A + + EL +S N + + + L+ + L S ++
Sbjct: 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218
Query: 325 LPARVGHCTIV---DLSNNRLSGD----LSRMQNWGNY-VEDIHLSSNFLTG-------- 368
L V + L +N+L L + + + + +T
Sbjct: 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278
Query: 369 MVPNQTSQFLRLTSFKVSNNSLEGD-----LPAVLGTYPELKVIDLSLNHLNG----FLL 419
++ + S L ++ N L + +L +L+ + +
Sbjct: 279 VLRAKES----LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334
Query: 420 PSFFTSTKLTDLNLSGNNF--SGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLS----G 473
+ L +L +S N +G L + P + L L LA +S
Sbjct: 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS------VLRVLWLADCDVSDSSCS 388
Query: 474 RLLPGISKFHNLVYLNLSNNKFE 496
L + H+L L+LSNN
Sbjct: 389 SLAATLLANHSLRELDLSNNCLG 411
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 9e-15
Identities = 71/408 (17%), Positives = 137/408 (33%), Gaps = 81/408 (19%)
Query: 163 LKYLDLRANRFGGD-IMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFI----SSIQYL 217
++ LD++ LL L V L + + + D S ++ L
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT---EARCKDISSALRVNPALAEL 61
Query: 218 NISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLS--G 275
N+ N L D + ++ + + + ++ L L + L+ G
Sbjct: 62 NLRSNELG------------------DVGVHCVLQGLQTPSC--KIQKLSLQNCCLTGAG 101
Query: 276 SLPVALLQESSMMLSELDLSLNQLEGP-VGSITSA------TLKKVNLSSNKLS----GS 324
++ + L EL LS N L + + L+K+ L LS
Sbjct: 102 CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161
Query: 325 LPARVGHC---TIVDLSNNRLSGD----LSRMQNWGNY-VEDIHLSSNFLT--------- 367
L + + + +SNN ++ L + +E + L S +T
Sbjct: 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221
Query: 368 GMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLN----GFLLPSFF 423
+ + + L L S K+ + + P +L L+ + + + G L
Sbjct: 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281
Query: 424 TSTKLTDLNLSGNNF--SGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGR----LLP 477
L +L+L+GN G L E P L SL + S +
Sbjct: 282 AKESLKELSLAGNELGDEGARLLCETLLEP------GCQLESLWVKSCSFTAACCSHFSS 335
Query: 478 GISKFHNLVYLNLSNNKFEGS----IPDGLPNG---LKEFNVSFNNLS 518
+++ L+ L +SNN+ E + + GL L+ ++ ++S
Sbjct: 336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 6e-11
Identities = 69/424 (16%), Positives = 123/424 (29%), Gaps = 113/424 (26%)
Query: 92 LCNVSVSNNQLMGNITDIG---------SIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLL 142
+ +S+ N +T G ++ +L+ L LS N L +G+ L +L
Sbjct: 87 IQKLSLQNC----CLTGAGCGVLSSTLRTLPTLQELHLSDN---LLGDAGLQLLCEGLL- 138
Query: 143 NISSNSFEGTFPSGFGGLGKLKYLDLRANRFG----GDIMHLLSQLGSVVHVDLSNNQFS 198
+L+ L L + +L + +SNN +
Sbjct: 139 --DPQC-------------RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183
Query: 199 --GSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFD-------NLEVFDASNNH 249
G L G ++ L + + D +L +N
Sbjct: 184 EAGVRVLCQGLKDSPCQLEALKLESCGV-----TSDNCRDLCGIVASKASLRELALGSNK 238
Query: 250 --------LVGAIPSFNFVFSLRILRLGSNQLS--GSLPVALLQESSMMLSELDLSLNQL 299
L + + LR L + ++ G + + + L EL L+ N+L
Sbjct: 239 LGDVGMAELCPGLLHPS--SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296
Query: 300 EGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDI 359
+ TL + L + + +
Sbjct: 297 GDEGARLLCETLLEPGCQLESL--------------WVKSCSFTAACCS----------- 331
Query: 360 HLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGD-----LPAVLGTYPELKVIDLSLNHL 414
H SS + N+ L ++SNN LE + L+V+ L+ +
Sbjct: 332 HFSS----VLAQNRF-----LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382
Query: 415 N----GFLLPSFFTSTKLTDLNLSGNNF--SGPLPLQEIQNNPSTGSTQNLSLTSLDLAY 468
+ L + + L +L+LS N +G L L E P L L L
Sbjct: 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP------GCLLEQLVLYD 436
Query: 469 NSLS 472
S
Sbjct: 437 IYWS 440
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 1e-09
Identities = 45/249 (18%), Positives = 83/249 (33%), Gaps = 48/249 (19%)
Query: 308 SATLKKVNLSSNKLSGS----LPARVGHCTIVDLSNNRLS----GDLSRMQNWGNYVEDI 359
S ++ +++ +LS + L + C +V L + L+ D+S + ++
Sbjct: 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61
Query: 360 HLSSNFLTG----------MVPNQTSQFLRLTSFKVSNNSL--EG--DLPAVLGTYPELK 405
+L SN L P+ Q L L N L G L + L T P L+
Sbjct: 62 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSL-----QNCCLTGAGCGVLSSTLRTLPTLQ 116
Query: 406 VIDLSLNHLNGFLLPSFFT-----STKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLS 460
+ LS N L L +L L L + + + ++
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL-SAASCEPL----ASVLRAKPD 171
Query: 461 LTSLDLAYNSLSGR----LLPGISKFH-NLVYLNLSNNKF--EG--SIPDGLPN--GLKE 509
L ++ N ++ L G+ L L L + + + + + L+E
Sbjct: 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231
Query: 510 FNVSFNNLS 518
+ N L
Sbjct: 232 LALGSNKLG 240
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 6e-15
Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 30/241 (12%)
Query: 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRF 173
+ L+L N + + L++L +L +S N F GL L L+L NR
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR- 123
Query: 174 GGDIMHL----LSQLGSVVHVDLSNNQFSGSLDLGLGDSSF--ISSIQYLNISENSLVGE 227
+ + L + + L NN + +F I S++ L++ E +
Sbjct: 124 ---LTTIPNGAFVYLSKLKELWLRNNPIE-----SIPSYAFNRIPSLRRLDLGELKRLSY 175
Query: 228 LFPH--DGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQES 285
+ +G+ NL + + +L IP+ + L L L N LS ++ Q
Sbjct: 176 ISEGAFEGLS---NLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLS-AIRPGSFQ-G 229
Query: 286 SMMLSELDLSLNQLEG-PVGSITSAT-LKKVNLSSNKLSGSLPARV----GHCTIVDLSN 339
M L +L + +Q++ + + L ++NL+ N L+ LP + H + L +
Sbjct: 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHH 288
Query: 340 N 340
N
Sbjct: 289 N 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 2e-14
Identities = 47/259 (18%), Positives = 89/259 (34%), Gaps = 42/259 (16%)
Query: 308 SATLKKVNLSSNKLSGSLPARV-GHCTIVDLSNNRLS----GDLSRMQNWGNYVEDIHLS 362
S KV L +P + + +++L N++ +++ +E + LS
Sbjct: 42 SNQFSKVICVRKNLR-EVPDGISTNTRLLNLHENQIQIIKVNSFKHLRH----LEILQLS 96
Query: 363 SNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSF 422
N + + + L + ++ +N L +LK + L N + +F
Sbjct: 97 RNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF 156
Query: 423 FTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNL-SLTSLDLAYNSLSGRLLPGISK 481
L L+L L I G+ + L +L L+LA +L +P ++
Sbjct: 157 NRIPSLRRLDLGELK-----RLSYISE----GAFEGLSNLRYLNLAMCNLRE--IPNLTP 205
Query: 482 FHNLVYLNLSNNKFEGSIPDGLPNG---LKEFNVSFNNLSGVVPE--------------- 523
L L+LS N +I G G L++ + + + +
Sbjct: 206 LIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264
Query: 524 -NLRNFPDSAFHPGNSLLT 541
NL P F P + L
Sbjct: 265 NNLTLLPHDLFTPLHHLER 283
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 3e-11
Identities = 42/220 (19%), Positives = 75/220 (34%), Gaps = 22/220 (10%)
Query: 88 GLKMLCNVSVSNNQLMGNITDIGS-----IQSLEFLDLSHNLFHGLIPSGIVSLKNLMLL 142
L+ L + +S N I I + +L L+L N + V L L L
Sbjct: 86 HLRHLEILQLSRNH----IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141
Query: 143 NISSNSFEGTFPSGFGGLGKLKYLDL-RANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSL 201
+ +N E F + L+ LDL R L ++ +++L+
Sbjct: 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR--- 198
Query: 202 DLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPS--FNF 259
+ + + + + L++S N L +L+ + + I F+
Sbjct: 199 --EIPNLTPLIKLDELDLSGNHL--SAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDN 253
Query: 260 VFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQL 299
+ SL + L N L+ LP L L + L N
Sbjct: 254 LQSLVEINLAHNNLT-LLPHDLFTPLH-HLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 3e-09
Identities = 51/251 (20%), Positives = 91/251 (36%), Gaps = 38/251 (15%)
Query: 237 FDNLEVFDASNNHLVGAIPSFNFVF--SLRILRLGSNQLSGSLPVALLQESSMMLSELDL 294
N + + N + I +F L IL+L N + A ++ L+ L+L
Sbjct: 63 STNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN--LNTLEL 119
Query: 295 SLNQLEG-PVGSITSAT-LKKVNLSSNKLSGSLPARV----GHCTIVDLS-NNRLS---- 343
N+L P G+ + LK++ L +N + S+P+ +DL RLS
Sbjct: 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISE 178
Query: 344 GDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKV---SNNSLEGDLPAVLGT 400
G + N + ++L+ L +PN L S N L P
Sbjct: 179 GAFEGLSN----LRYLNLAMCNLR-EIPN----LTPLIKLDELDLSGNHLSAIRPGSFQG 229
Query: 401 YPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLS 460
L+ + + + + +F L ++NL+ NN L + ++ T
Sbjct: 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN------LTLLPHDLFTPLH---H 280
Query: 461 LTSLDLAYNSL 471
L + L +N
Sbjct: 281 LERIHLHHNPW 291
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 75.9 bits (186), Expect = 2e-14
Identities = 47/294 (15%), Positives = 98/294 (33%), Gaps = 27/294 (9%)
Query: 88 GLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSN 147
++ + + + S++ + +++ + GI L N+ L ++ N
Sbjct: 19 AFAETIKDNLKKKSV-TDAVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGN 75
Query: 148 SFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHL--LSQLGSVVHVDLSNNQFSGSLDLGL 205
P L L +L L N+ I L L L + + L +N S ++ GL
Sbjct: 76 KLTDIKP--LTNLKNLGWLFLDENK----IKDLSSLKDLKKLKSLSLEHNGIS-DIN-GL 127
Query: 206 GDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRI 265
+ ++ L + N + ++ + L+ +N + I + L+
Sbjct: 128 ---VHLPQLESLYLGNNKIT-DITVLSRLT---KLDTLSLEDNQIS-DIVPLAGLTKLQN 179
Query: 266 LRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSL 325
L L N +S +A L+ L L+L + I + V + GSL
Sbjct: 180 LYLSKNHISDLRALAGLKN----LDVLELFSQECLNK--PINHQSNLVVPNTVKNTDGSL 233
Query: 326 PARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLR 379
D + L N +++ ++ + +Q L+
Sbjct: 234 VTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLK 287
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 70.5 bits (172), Expect = 1e-12
Identities = 41/221 (18%), Positives = 76/221 (34%), Gaps = 26/221 (11%)
Query: 311 LKKVNLSSNKLSGSLP-ARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGM 369
K NL ++ ++ + + +N+ + + +Q N V + L+ N LT +
Sbjct: 23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQGIQYLPN-VTKLFLNGNKLTDI 80
Query: 370 VPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLT 429
P + L + N ++ DL + L +LK + L N ++ + +L
Sbjct: 81 KPL--TNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS--DINGLVHLPQLE 134
Query: 430 DLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLN 489
L L N + L + L +L L N +S + ++ L L
Sbjct: 135 SLYLGNNKITDITVLSRLTK-----------LDTLSLEDNQISD--IVPLAGLTKLQNLY 181
Query: 490 LSNNKFEGSIP--DGLPNGLKEFNVSFNNLSGVVPENLRNF 528
LS N + GL N L + + N
Sbjct: 182 LSKNHIS-DLRALAGLKN-LDVLELFSQECLNKPINHQSNL 220
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 64.4 bits (156), Expect = 8e-11
Identities = 31/196 (15%), Positives = 60/196 (30%), Gaps = 29/196 (14%)
Query: 337 LSNNRLS--GDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDL 394
+ + +L +T V ++ + +N+ ++ +
Sbjct: 6 TVSTPIKQIFPDDAFAE----TIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SV 58
Query: 395 PAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTG 454
+ P + + L+ N L + L L L N L++++
Sbjct: 59 QG-IQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENKIKDLSSLKDLKK----- 110
Query: 455 STQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIP-DGLPNGLKEFNVS 513
L SL L +N +S + G+ L L L NNK L L ++
Sbjct: 111 ------LKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKITDITVLSRLTK-LDTLSLE 161
Query: 514 FNNLSGVVPENLRNFP 529
N +S + L
Sbjct: 162 DNQISDI--VPLAGLT 175
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 63.6 bits (154), Expect = 2e-10
Identities = 51/326 (15%), Positives = 104/326 (31%), Gaps = 56/326 (17%)
Query: 131 SGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHL--LSQLGSVV 188
+ + N+ S L + + + I + + L +V
Sbjct: 15 FPDDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSD----IKSVQGIQYLPNVT 68
Query: 189 HVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNN 248
+ L+ N+ ++ I+ L NL N
Sbjct: 69 KLFLNGNK--------------LTDIKPLT-----------------NLKNLGWLFLDEN 97
Query: 249 HLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG--PVGSI 306
+ + S + L+ L L N +S + L + L L L N++ + +
Sbjct: 98 KIK-DLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ----LESLYLGNNKITDITVLSRL 152
Query: 307 TSATLKKVNLSSNKLSGSLP--ARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSN 364
T L ++L N++S + A + + LS N +S DL + N ++ + L S
Sbjct: 153 TK--LDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKNHIS-DLRALAGLKN-LDVLELFSQ 207
Query: 365 FLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFT 424
N S + + K ++ SL P ++ + + ++ + SF
Sbjct: 208 ECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPEFTNEVSFIF 265
Query: 425 STKLTDLNLSGN-NFSGPLPLQEIQN 449
+T + PL+E+
Sbjct: 266 YQPVTIGKAKARFHGRVTQPLKEVYT 291
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 2e-06
Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 5/112 (4%)
Query: 86 IIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNIS 145
++ L L ++ + NN++ +IT + + L+ L L N + + L L L +S
Sbjct: 127 LVHLPQLESLYLGNNKI-TDITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLS 183
Query: 146 SNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQF 197
N + GL L L+L + ++ S L V ++
Sbjct: 184 KNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 1e-13
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 11/134 (8%)
Query: 697 SRFTKNSDVLNACSPEKLAGDLHLFDVSLMFTAEELSHA-----PAEVIGRSCHGTLYKA 751
S+++K ++ +N S +L A +IG G +YK
Sbjct: 3 SKYSKATNSINDALSSSYLVPFE----SYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKG 58
Query: 752 TLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811
L G+ +A+KR ++G +EF E++ L +HP+LVSL G+ + +E ++I Y
Sbjct: 59 VLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCD--ERNEMILIYKY 116
Query: 812 INAQSLAVYLQGKG 825
+ +L +L G
Sbjct: 117 MENGNLKRHLYGSD 130
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 46/258 (17%), Positives = 95/258 (36%), Gaps = 31/258 (12%)
Query: 262 SLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG--PVGSITSATLKKVNLSSN 319
+ + G + ++ ++ A L ++ L + V + + L + L N
Sbjct: 20 NAIKIAAGKSNVTDTVTQADLDG----ITTLSAFGTGVTTIEGVQYLNN--LIGLELKDN 73
Query: 320 KLSGSLP-ARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFL 378
+++ P + T ++LS N L ++S + + ++ + L+S +T + P +
Sbjct: 74 QITDLAPLKNLTKITELELSGNPLK-NVSAIAGLQS-IKTLDLTSTQITDVTPL--AGLS 129
Query: 379 RLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNF 438
L + N + ++ L L+ + + ++ L +KLT L N
Sbjct: 130 NLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKI 185
Query: 439 SGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGS 498
S PL + N L + L N +S + ++ NL + L+N +
Sbjct: 186 SDISPLASLPN-----------LIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTIT-N 231
Query: 499 IPDGLPNGLKEFNVSFNN 516
P N L NV
Sbjct: 232 QPVFYNNNLVVPNVVKGP 249
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 5e-13
Identities = 46/218 (21%), Positives = 87/218 (39%), Gaps = 21/218 (9%)
Query: 82 SFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLML 141
T L + +S + I + + +L L+L N L + + +L +
Sbjct: 33 DTVTQADLDGITTLSAFGTGV-TTIEGVQYLNNLIGLELKDNQITDL--APLKNLTKITE 89
Query: 142 LNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSL 201
L +S N S GL +K LDL + + D+ L+ L ++ + L NQ +
Sbjct: 90 LELSGNPL--KNVSAIAGLQSIKTLDLTSTQI-TDVTP-LAGLSNLQVLYLDLNQITNIS 145
Query: 202 DLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVF 261
L + ++++QYL+I + +L P + L A +N + I +
Sbjct: 146 PL-----AGLTNLQYLSIGNAQVS-DLTPLANLS---KLTTLKADDNKISD-ISPLASLP 195
Query: 262 SLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQL 299
+L + L +NQ+S P+A L + L+ +
Sbjct: 196 NLIEVHLKNNQISDVSPLANTSN----LFIVTLTNQTI 229
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 20/154 (12%), Positives = 48/154 (31%), Gaps = 18/154 (11%)
Query: 375 SQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLS 434
+++ + + + + + L L L
Sbjct: 16 PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELK 71
Query: 435 GNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNK 494
N + PL+ + +T L+L+ N L + I+ ++ L+L++ +
Sbjct: 72 DNQITDLAPLKNLTK-----------ITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQ 118
Query: 495 FEGSIPDGLPNGLKEFNVSFNNLSGVVP-ENLRN 527
P + L+ + N ++ + P L N
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTN 152
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 82 SFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLML 141
+ GL L + + NQ+ NI+ + + +L++L + + L + + +L L
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTT 177
Query: 142 LNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFS 198
L N + S L L + L+ N+ D+ L+ ++ V L+N +
Sbjct: 178 LKADDNKI--SDISPLASLPNLIEVHLKNNQI-SDVSP-LANTSNLFIVTLTNQTIT 230
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 47/211 (22%), Positives = 83/211 (39%), Gaps = 13/211 (6%)
Query: 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRF 173
+ + + L N + + + +NL +L + SN + F GL L+ LDL N
Sbjct: 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92
Query: 174 GGDIM-HLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHD 232
+ LG + + L L GL ++++QYL + +N+L + P D
Sbjct: 93 LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRG--LAALQYLYLQDNAL--QALPDD 147
Query: 233 GMPYFDNLEVFDASNNHLVGAIPSFNFV--FSLRILRLGSNQLSGSLPVALLQESSMMLS 290
NL N + ++P F SL L L N+++ + ++ L
Sbjct: 148 TFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLG-RLM 204
Query: 291 ELDLSLNQLEG-PVGSITSAT-LKKVNLSSN 319
L L N L P ++ L+ + L+ N
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 41/268 (15%), Positives = 86/268 (32%), Gaps = 62/268 (23%)
Query: 129 IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVV 188
+P GI + + N + F L L L +N
Sbjct: 26 VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-------------- 69
Query: 189 HVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPH--DGMPYFDNLEVFDAS 246
+ F+G ++ ++ L++S+N+ + + P G+ L
Sbjct: 70 --RIDAAAFTG-----------LALLEQLDLSDNAQLRSVDPATFHGLG---RLHTLHLD 113
Query: 247 NNHLVGAIPS--FNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG-PV 303
L + F + +L+ L L N L +LP + L+ L L N++ P
Sbjct: 114 RCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFR-DLGNLTHLFLHGNRISSVPE 170
Query: 304 GSITSAT-LKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLS 362
+ L ++ L N+++ + DL + ++L
Sbjct: 171 RAFRGLHSLDRLLLHQNRVA-HVHPHA----FRDLGR----------------LMTLYLF 209
Query: 363 SNFLTGMVPNQTSQFLRLTSFKVSNNSL 390
+N L+ + + L ++++N
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 5e-09
Identities = 47/213 (22%), Positives = 77/213 (36%), Gaps = 30/213 (14%)
Query: 308 SATLKKVNLSSNKLSGSLPARV----GHCTIVDLSNNRLS----GDLSRMQNWGNYVEDI 359
A +++ L N++S +PA + TI+ L +N L+ + + +E +
Sbjct: 31 PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL----LEQL 85
Query: 360 HLSSNFLTGMVPNQTSQFL-RLTSFKVSNNSLEGDLPA-VLGTYPELKVIDLSLNHLNGF 417
LS N V T L RL + + L+ +L + L+ + L N L
Sbjct: 86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-A 143
Query: 418 LLPSFFTS-TKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLL 476
L F LT L L GN + + G SL L L N ++ +
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNR------ISSVPERAFRGLH---SLDRLLLHQNRVA-HVH 193
Query: 477 PGI-SKFHNLVYLNLSNNKFEGSIPDGLPNGLK 508
P L+ L L N ++P L+
Sbjct: 194 PHAFRDLGRLMTLYLFANNLS-ALPTEALAPLR 225
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 34/166 (20%), Positives = 61/166 (36%), Gaps = 13/166 (7%)
Query: 88 GLKMLCNVSVSNNQLMGNITD--IGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNIS 145
GL +L + +S+N + ++ + L L L L P L L L +
Sbjct: 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137
Query: 146 SNSFEGTFPSG-FGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLG 204
N+ + P F LG L +L L NR L S+ + L N+ +
Sbjct: 138 DNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-----H 191
Query: 205 LGDSSF--ISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNN 248
+ +F + + L + N+L P + + L+ ++N
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNL--SALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 41/213 (19%), Positives = 70/213 (32%), Gaps = 21/213 (9%)
Query: 239 NLEVFDASNNHLVGAIP--SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSL 296
+ N + +P SF +L IL L SN L+ + A ++ L +LDLS
Sbjct: 33 ASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLAL-LEQLDLSD 89
Query: 297 N-QLEG-PVGSITSAT-LKKVNLSSNKLSGSLPARV----GHCTIVDLSNNRLS----GD 345
N QL + L ++L L L + + L +N L
Sbjct: 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDT 148
Query: 346 LSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELK 405
+ N + + L N ++ + L + N + P L
Sbjct: 149 FRDLGN----LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204
Query: 406 VIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNF 438
+ L N+L+ + L L L+ N +
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 4e-07
Identities = 36/147 (24%), Positives = 53/147 (36%), Gaps = 24/147 (16%)
Query: 402 PELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNN--------FSGPLPLQE--IQNNP 451
+ I L N ++ SF LT L L N F+G L++ + +N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 452 -----STGSTQNL-SLTSLDLAYNSLSGRLLPGI-SKFHNLVYLNLSNNKFEGSIPDG-- 502
+ L L +L L L L PG+ L YL L +N + ++PD
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTF 149
Query: 503 --LPNGLKEFNVSFNNLSGVVPENLRN 527
L N L + N +S V R
Sbjct: 150 RDLGN-LTHLFLHGNRISSVPERAFRG 175
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 7e-06
Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 9/115 (7%)
Query: 88 GLKMLCNVSVSNNQLMGNITDI-----GSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLL 142
GL L + + +N + + + +L L L N + L +L L
Sbjct: 127 GLAALQYLYLQDNA----LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182
Query: 143 NISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQF 197
+ N P F LG+L L L AN L+ L ++ ++ L++N +
Sbjct: 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 55/236 (23%), Positives = 90/236 (38%), Gaps = 39/236 (16%)
Query: 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSG-FGGLGKLKYLDLRANR 172
S + LDLS N L S L +L++S + T G + L L L L N
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87
Query: 173 FGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHD 232
+ S L S+ + + SL+ + +++ LN++ N + + F
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGH--LKTLKELNVAHNLI--QSFKLP 142
Query: 233 GMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVAL---LQESSMML 289
YF NL +L L L SN++ S+ L + ++
Sbjct: 143 E--YFSNLT--------------------NLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLN 179
Query: 290 SELDLSLNQLEG-PVGSITSATLKKVNLSSNKLSGSLP----ARVGHCTIVDLSNN 340
LDLSLN + G+ LK++ L +N+L S+P R+ + L N
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 46/208 (22%), Positives = 73/208 (35%), Gaps = 43/208 (20%)
Query: 360 HLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTY---PELKVIDLSLNHLNG 416
LS N L + F L +S ++ + G Y L + L+ N +
Sbjct: 34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIED--GAYQSLSHLSTLILTGNPIQ- 89
Query: 417 FLLPS--FFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGR 474
L F + L L N L ++N P L L++A+N +
Sbjct: 90 -SLALGAFSGLSSLQKLVAVETN------LASLENFPIGHLKT---LKELNVAHNLIQSF 139
Query: 475 LLPGI-SKFHNLVYLNLSNNKFEGSIPDG-------LPNGLKEFNVSFNNLSGVVPE--- 523
LP S NL +L+LS+NK + SI +P ++S N ++ + P
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198
Query: 524 ------------NLRNFPDSAFHPGNSL 539
L++ PD F SL
Sbjct: 199 EIRLKELALDTNQLKSVPDGIFDRLTSL 226
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 6e-08
Identities = 42/213 (19%), Positives = 77/213 (36%), Gaps = 34/213 (15%)
Query: 309 ATLKKVNLSSNKLSGSLPARV----GHCTIVDLSNNRLS----GDLSRMQNWGNYVEDIH 360
+ K ++LS N L L + ++DLS + G + + + +
Sbjct: 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH----LSTLI 82
Query: 361 LSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLP 420
L+ N + + S L +L +G LK ++++ N + F LP
Sbjct: 83 LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 421 SFFTS-TKLTDLNLSGNN--------FSGPLPLQ------EIQNNP----STGSTQNLSL 461
+F++ T L L+LS N + ++ NP G+ + + L
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202
Query: 462 TSLDLAYNSLSGRLLPGI-SKFHNLVYLNLSNN 493
L L N L + GI + +L + L N
Sbjct: 203 KELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 4e-13
Identities = 62/366 (16%), Positives = 116/366 (31%), Gaps = 68/366 (18%)
Query: 162 KLKYLDLRANRFGGDIMHLLSQL-----GSVVHVDLSNNQFS--GSLDLGLGDSSFISSI 214
+ LDL N L Q SV ++LS N S +L ++ +++
Sbjct: 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82
Query: 215 QYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLS 274
LN+S N L S++ LV + + F++ +L LG N S
Sbjct: 83 TSLNLSGNFL------------------SYKSSDELVKTLAAIP--FTITVLDLGWNDFS 122
Query: 275 GSLPVAL---LQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGH 331
++ L+L N L L + + N L
Sbjct: 123 SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL---------- 172
Query: 332 CTIVDLSNNRLS----GDLSRM-QNWGNYVEDIHLSSNFLTGMVPNQTSQFLR-----LT 381
+L N L+ +L++ + V + LS+N L + + +
Sbjct: 173 ----NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVV 228
Query: 382 SFKVSNNSLEGD----LPAVLGTYPELKVIDLSLNHLNGF-------LLPSFFTSTKLTD 430
S + N L G L + + L+ + L + + L +F K+
Sbjct: 229 SLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL 288
Query: 431 LNLSGNNF--SGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYL 488
++ +G S +P+ + S G SL + L + + ++ L
Sbjct: 289 VDKNGKEIHPSHSIPISNLIRELS-GKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRES 347
Query: 489 NLSNNK 494
+
Sbjct: 348 IQTCKP 353
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 9e-11
Identities = 58/303 (19%), Positives = 102/303 (33%), Gaps = 52/303 (17%)
Query: 262 SLRILRLGSNQLSGSLPVAL---LQESSMMLSELDLSLNQLEGPVG--------SITSAT 310
+ L L N L V L + ++ L+LS N L G + A
Sbjct: 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL-GFKNSDELVQILAAIPAN 81
Query: 311 LKKVNLSSNK--------LSGSLPARVGHCTIVDLSNNRLSGD----LSRM-QNWGNYVE 357
+ +NLS N L +L A T++DL N S + N +
Sbjct: 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141
Query: 358 DIHLSSNFLTGMVPNQTSQFLR-----LTSFKVSNNSL--EG--DLPAVLGTYPE-LKVI 407
++L N L ++ Q L + S + N+L + +L L + P + +
Sbjct: 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL 201
Query: 408 DLSLNHLN---GFLLPSFFTS--TKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLT 462
DLS N L L F+S + LNL N L+ + L
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL-HGPSLENL----KLLKDSLKHLQ 256
Query: 463 SLDLAYNSLSG-------RLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFN 515
++ L Y+ + L ++ ++ + + S + N ++E + +
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKAD 316
Query: 516 NLS 518
S
Sbjct: 317 VPS 319
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 58/307 (18%), Positives = 98/307 (31%), Gaps = 64/307 (20%)
Query: 266 LRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSI--------TSATLKKVNLS 317
+ GS PV ++ LDLSLN L + ++ T A++ +NLS
Sbjct: 1 MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNL-YSISTVELIQAFANTPASVTSLNLS 59
Query: 318 SNK--------LSGSLPARVGHCTIVDLSNNRLSGD----LSRM-QNWGNYVEDIHLSSN 364
N L L A + T ++LS N LS L + + + L N
Sbjct: 60 GNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN 119
Query: 365 FLTGMVPNQTSQFLR-----LTSFKVSNNSLEGD----LPAVLGTYPE-LKVIDLSLNHL 414
+ ++ Q +TS + N L L +L P + ++L N+L
Sbjct: 120 DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179
Query: 415 N-------GFLLPSFFTSTKLTDLNLSGNNF--SGPLPLQE-IQNNPSTGSTQNLSLTSL 464
L S +T L+LS N L + P+ + SL
Sbjct: 180 ASKNCAELAKFLAS--IPASVTSLDLSANLLGLKSYAELAYIFSSIPNH-------VVSL 230
Query: 465 DLAYNSLSG----RLLPGISKFHNLVYLNLSNNKFEGSIPDGL---------PNGLKEFN 511
+L N L G L +L + L + + + + +
Sbjct: 231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVD 290
Query: 512 VSFNNLS 518
+ +
Sbjct: 291 KNGKEIH 297
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 2e-12
Identities = 34/187 (18%), Positives = 73/187 (39%), Gaps = 18/187 (9%)
Query: 309 ATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTG 368
L + + A++ T + L+N ++ DL+ ++ N ++D+ +++ T
Sbjct: 23 KAYLNGLLGQSSTANITEAQMNSLTYITLANINVT-DLTGIEYAHN-IKDLTINNIHATN 80
Query: 369 MVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKL 428
P S L ++ + D L L ++D+S + + +L T K+
Sbjct: 81 YNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138
Query: 429 TDLNLSGNNF-SGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVY 487
++LS N + +PL+ + L SL++ ++ + GI F L
Sbjct: 139 NSIDLSYNGAITDIMPLKTLPE-----------LKSLNIQFDGVHD--YRGIEDFPKLNQ 185
Query: 488 LNLSNNK 494
L +
Sbjct: 186 LYAFSQT 192
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 3e-12
Identities = 23/135 (17%), Positives = 49/135 (36%), Gaps = 7/135 (5%)
Query: 88 GLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSN 147
+ +++++N N I + +LE L + + L +L LL+IS +
Sbjct: 64 YAHNIKDLTINNIHA-TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122
Query: 148 SFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGD 207
+ + + + L K+ +DL N DIM L L + +++ + +
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGI---- 177
Query: 208 SSFISSIQYLNISEN 222
+ L
Sbjct: 178 -EDFPKLNQLYAFSQ 191
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 7e-11
Identities = 32/213 (15%), Positives = 73/213 (34%), Gaps = 43/213 (20%)
Query: 89 LKMLCNVSVSNNQLMGNITDI--GSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISS 146
K N + + +I + SL ++ L++ L +GI N+ L I++
Sbjct: 22 FKAYLNGLLGQSS----TANITEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINN 75
Query: 147 NSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLG 206
+ GL L+ L + D + LS L S+ +D+S++ S+ +
Sbjct: 76 IHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133
Query: 207 DSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRIL 266
+ + +++S N + ++ P +P L+ L
Sbjct: 134 T---LPKVNSIDLSYNGAITDIMPLKTLP--------------------------ELKSL 164
Query: 267 RLGSNQLSGSLPVALLQESSMMLSELDLSLNQL 299
+ + + + + L++L +
Sbjct: 165 NIQFDGVHDYRGIEDFPK----LNQLYAFSQTI 193
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 4e-10
Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 4/115 (3%)
Query: 86 IIGLKMLCNVSVSNNQLMGN-ITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNI 144
I GL L + + + + I ++ + SL LD+SH+ I + I +L + +++
Sbjct: 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143
Query: 145 SSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSG 199
S N T L +LK L+++ + D + + + + G
Sbjct: 144 SYNG-AITDIMPLKTLPELKSLNIQFDGVH-DYRGI-EDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 1e-07
Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 13/94 (13%)
Query: 426 TKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNL 485
+ DL ++ + + P+ + N L L + ++ +P +S +L
Sbjct: 66 HNIKDLTINNIHATNYNPISGLSN-----------LERLRIMGKDVTSDKIPNLSGLTSL 114
Query: 486 VYLNLSNNKFEGSIPDGLPN--GLKEFNVSFNNL 517
L++S++ + SI + + ++S+N
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 9e-07
Identities = 15/106 (14%), Positives = 29/106 (27%), Gaps = 15/106 (14%)
Query: 426 TKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNL 485
LT + L+ N + ++ N + L + + IS NL
Sbjct: 44 NSLTYITLANINVTDLTGIEYAHN-----------IKDLTINNIHATN--YNPISGLSNL 90
Query: 486 VYLNLSNNKFEGSIPDGLPN--GLKEFNVSFNNLSGVVPENLRNFP 529
L + L L ++S + + + P
Sbjct: 91 ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 1e-05
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 4/99 (4%)
Query: 78 VGNFSFPTIIGLKMLCNVSVSNNQLMG-NITDIGSIQSLEFLDLSHNLFHGLIPSGIVSL 136
V + P + GL L + +S++ +T I ++ + +DLS+N I + +L
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTL 158
Query: 137 KNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGG 175
L LNI + G KL L + GG
Sbjct: 159 PELKSLNIQFDGV--HDYRGIEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 23/181 (12%), Positives = 62/181 (34%), Gaps = 32/181 (17%)
Query: 262 SLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLE--GPVGSITSATLKKVNLSSN 319
SL + L + ++ + + +L ++ P+ +++ L+++ +
Sbjct: 45 SLTYITLANINVTDLTGIEYAHN----IKDLTINNIHATNYNPISGLSN--LERLRIMGK 98
Query: 320 KLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLR 379
++ +LS + + + + +S + + + + +
Sbjct: 99 DVTSDKI-----------------PNLSGLTS----LTLLDISHSAHDDSILTKINTLPK 137
Query: 380 LTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFS 439
+ S +S N D+ L T PELK +++ + ++ KL L
Sbjct: 138 VNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIG 194
Query: 440 G 440
G
Sbjct: 195 G 195
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 6e-11
Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 12/125 (9%)
Query: 710 SPEKLAGDLHLFDVSLMFTA-----EELSHAPAEVIGRSCHGTLYKATLDSGSILAVKRL 764
S E H F + E +G G +YK ++ + +AVK+L
Sbjct: 4 SLEVSDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVN-NTTVAVKKL 62
Query: 765 REGIAK----GKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQSLAVY 820
+ K++F +E+K + +H NLV L G+ + ++ Y+ SL
Sbjct: 63 AAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSS--DGDDLCLVYVYMPNGSLLDR 120
Query: 821 LQGKG 825
L
Sbjct: 121 LSCLD 125
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 8e-11
Identities = 34/230 (14%), Positives = 73/230 (31%), Gaps = 27/230 (11%)
Query: 310 TLKKVNLSSNKLSGSLPARV-GHCTIVDLSNNRLS----GDLSRMQNWGNYVEDIHLSSN 364
+ + +K++ +P+ + + + +L G S + +E I +S N
Sbjct: 10 SNRVFLCQESKVT-EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGD----LEKIEISQN 64
Query: 365 FLTGMVPNQTSQFL-RLTSFKVSN-NSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSF 422
+ ++ L +L ++ N+L P P L+ + +S +
Sbjct: 65 DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 124
Query: 423 FTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGI-SK 481
S + L++ N + I+ N G + L L N + + +
Sbjct: 125 IHSLQKVLLDIQDNI-----NIHTIERNSFVGLSFE--SVILWLNKNGIQ-EIHNSAFNG 176
Query: 482 FHNLVYLNLSNNKFEGSIP----DGLPNGLKEFNVSFNNLSGVVPENLRN 527
NN E +P G ++S + + L N
Sbjct: 177 TQLDELNLSDNNNLE-ELPNDVFHGASG-PVILDISRTRIHSLPSYGLEN 224
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 1e-10
Identities = 52/311 (16%), Positives = 99/311 (31%), Gaps = 44/311 (14%)
Query: 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSG-FGGLGKLKYLDL-RAN 171
+ L + +L + IS N + F L KL + + +AN
Sbjct: 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90
Query: 172 RFGGDIMHL----LSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQ--YLNISEN--- 222
++++ L ++ ++ +SN L D I S+Q L+I +N
Sbjct: 91 N----LLYINPEAFQNLPNLQYLLISNTGIK-----HLPDVHKIHSLQKVLLDIQDNINI 141
Query: 223 -SLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPS--FNFVFSLRILRLGSNQLSGSLPV 279
++ F G+ + + + N + I + FN + +N L LP
Sbjct: 142 HTIERNSF--VGLSF--ESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPN 195
Query: 280 ALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVN----LSSNKLSGSLPARVG--HCT 333
+ +S LD+S ++ S+ S L+ + S+ L LP
Sbjct: 196 DVFHGAS-GPVILDISRTRIH----SLPSYGLENLKKLRARSTYNLK-KLPTLEKLVALM 249
Query: 334 IVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGD 393
L+ NW + ++H N R ++ ++
Sbjct: 250 EASLTYPS---HCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDNESSY 306
Query: 394 LPAVLGTYPEL 404
TY E
Sbjct: 307 SRGFDMTYTEF 317
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 9e-09
Identities = 41/224 (18%), Positives = 78/224 (34%), Gaps = 19/224 (8%)
Query: 129 IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDI-MHLLSQLGSV 187
IPS + +N + L F G G L+ +++ N I + S L +
Sbjct: 24 IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81
Query: 188 VHVDLSN-NQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDAS 246
+ + N ++ + + ++QYL IS + + P + + D
Sbjct: 82 HEIRIEKANNLL-YINPEAFQN--LPNLQYLLISNTGI--KHLPDVHKIHSLQKVLLDIQ 136
Query: 247 NNHLVGAIPSFNFV---FSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG-P 302
+N + I +FV F IL L N + + + + + N LE P
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQ-LDELNLSDNNNLEELP 194
Query: 303 VGSITSAT-LKKVNLSSNKLSGSLPARV--GHCTIVDLSNNRLS 343
A+ +++S ++ SLP+ + S L
Sbjct: 195 NDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK 237
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 46/270 (17%), Positives = 92/270 (34%), Gaps = 61/270 (22%)
Query: 262 SLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSAT------LKKVN 315
S R+ ++++ +P L + EL L +L I L+K+
Sbjct: 10 SNRVFLCQESKVT-EIPSDLPRN----AIELRFVLTKLR----VIQKGAFSGFGDLEKIE 60
Query: 316 LSSNKLSGSLPARV----GHCTIVDLSN-NRLS----GDLSRMQNWGNYVEDIHLSSNFL 366
+S N + + A V + + N L + N ++ + +S+ +
Sbjct: 61 ISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN----LQYLLISNTGI 116
Query: 367 TGMVPNQTSQFLRLTSFKVSNNSLEGDLP--AVLGTYPELKVIDLSLNHLNGFLLPSFFT 424
+ L+ + +N + + +G E ++ L+ N + + S F
Sbjct: 117 KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFN 175
Query: 425 STKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLS-LTSLDLAYNSLSG---------- 473
T+L +LNLS NN L+E+ N S LD++ +
Sbjct: 176 GTQLDELNLSDNN-----NLEELPN----DVFHGASGPVILDISRTRIHSLPSYGLENLK 226
Query: 474 ----------RLLPGISKFHNLVYLNLSNN 493
+ LP + K L+ +L+
Sbjct: 227 KLRARSTYNLKKLPTLEKLVALMEASLTYP 256
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 9e-11
Identities = 35/216 (16%), Positives = 75/216 (34%), Gaps = 21/216 (9%)
Query: 94 NVSVSNNQLMGNITDIGSI-QSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGT 152
+ V+ + I S+ S + L L + +L N+ + +S +
Sbjct: 15 DFRVTCKDI----QRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ 70
Query: 153 FPSG-FGGLGKLKYLDLRANRFGGDIMHL----LSQLGSVVHVDLSNNQFSGSLDLGLGD 207
S F L K+ ++++R R ++ ++ L +L + + + N DL
Sbjct: 71 LESHSFYNLSKVTHIEIRNTR---NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVY 127
Query: 208 SSFISSIQYLNISENSLVGELFPH--DGMPYFDNLEVFDASNNHLVGAIPSFNFVF-SLR 264
S+ L I++N + + + G+ + NN ++ + F L
Sbjct: 128 ST--DIFFILEITDNPYMTSIPVNAFQGLC--NETLTLKLYNNGF-TSVQGYAFNGTKLD 182
Query: 265 ILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLE 300
+ L N+ + S LD+S +
Sbjct: 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 36/230 (15%), Positives = 78/230 (33%), Gaps = 28/230 (12%)
Query: 311 LKKVNLSSNKLSG--SLPARVGHCTIVDLSNNRL----SGDLSRMQNWGNYVEDIHLSSN 364
+ ++ + SLP + L L S S + N + I++S +
Sbjct: 13 EEDFRVTCKDIQRIPSLPPST---QTLKLIETHLRTIPSHAFSNLPN----ISRIYVSID 65
Query: 365 FLTGMVPNQT-SQFLRLTSFKVSNNSLEGDLPA-VLGTYPELKVIDLSLNHLNGFLLPSF 422
+ + + ++T ++ N + L P LK + + L F +
Sbjct: 66 VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK 125
Query: 423 FTS-TKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISK 481
S L ++ N + +P+ Q + +L L N + +
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCN-------ETLTLKLYNNGFT-SVQGYAFN 177
Query: 482 FHNLVYLNLSNNKFEGSIP----DGLPNGLKEFNVSFNNLSGVVPENLRN 527
L + L+ NK+ I G+ +G +VS +++ + + L +
Sbjct: 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEH 227
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 8e-07
Identities = 30/179 (16%), Positives = 63/179 (35%), Gaps = 38/179 (21%)
Query: 380 LTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNN-- 437
F+V+ ++ +P++ P + + L HL +F ++ + +S +
Sbjct: 13 EEDFRVTCKDIQ-RIPSLP---PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL 68
Query: 438 -------FSGPLPLQE--IQNNP-----STGSTQNL-SLTSLDLAYNSLSGRLLPGISKF 482
F + I+N + + L L L + L ++ P ++K
Sbjct: 69 QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL--KMFPDLTKV 126
Query: 483 HN---LVYLNLSNNKFEGSIPD----GLPNGLKEFNVSFNNLSGVVPENLRNFPDSAFH 534
++ L +++N + SIP GL N + N + V AF+
Sbjct: 127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV--------QGYAFN 177
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 64/248 (25%), Positives = 91/248 (36%), Gaps = 57/248 (22%)
Query: 302 PVGSIT-SATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIH 360
P+ ++ A+ +VN L+ +LP L D + + H
Sbjct: 2 PICEVSKVASHLEVNCDKRNLT-ALPPD-------------LPKDTTIL----------H 37
Query: 361 LSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLP 420
LS N L + RLT + L L V GT P L +DLS N L LP
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQS--LP 93
Query: 421 SFFTS-TKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGI 479
+ LT L++S N L + G + L L L N L L PG+
Sbjct: 94 LLGQTLPALTVLDVSFNR------LTSLPLGALRGLGE---LQELYLKGNELK-TLPPGL 143
Query: 480 -SKFHNLVYLNLSNNKFEGSIP----DGLPNGLKEFNVSFNNLSGVVPENLRNFPDSAFH 534
+ L L+L+NN +P +GL N L + N+L + P F
Sbjct: 144 LTPTPKLEKLSLANNNLT-ELPAGLLNGLEN-LDTLLLQENSLYTI--------PKGFF- 192
Query: 535 PGNSLLTF 542
G+ LL F
Sbjct: 193 -GSHLLPF 199
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 49/214 (22%), Positives = 75/214 (35%), Gaps = 27/214 (12%)
Query: 114 SLEFLDLSHNLFHGL--IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRAN 171
S ++ L +P + K+ +L++S N + +L L+L
Sbjct: 11 SHLEVNCDKR---NLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65
Query: 172 RFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISEN---SLVGEL 228
+ + L + +DLS+NQ SL L + ++ L++S N SL
Sbjct: 66 ELT--KLQVDGTLPVLGTLDLSHNQLQ-SLPLLG---QTLPALTVLDVSFNRLTSLPLGA 119
Query: 229 FPHDGMPYFDNLEVFDASNNHLVGAIPS--FNFVFSLRILRLGSNQLSGSLPVALLQESS 286
G+ L+ N L +P L L L +N L+ LP LL
Sbjct: 120 L--RGLG---ELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLE 172
Query: 287 MMLSELDLSLNQLEG-PVGSITSATLKKVNLSSN 319
L L L N L P G S L L N
Sbjct: 173 -NLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 50/213 (23%), Positives = 71/213 (33%), Gaps = 27/213 (12%)
Query: 289 LSELDLSLNQLEGPVGSITS---ATLKKVNLSSNKLSGSLPARV----GHCTIVDLSNNR 341
E++ L ++ ++LS N L + T ++L
Sbjct: 12 HLEVNCDKRNL----TALPPDLPKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAE 66
Query: 342 LSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTY 401
L+ L + + LS N L +P LT VS N L L
Sbjct: 67 LT-KLQVDGTLPV-LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123
Query: 402 PELKVIDLSLNHLNGFLLPSFFTS-TKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLS 460
EL+ + L N L L P T KL L+L+ NN L E+ G
Sbjct: 124 GELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN------LTELPAGLLNGLEN--- 173
Query: 461 LTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNN 493
L +L L NSL + G H L + L N
Sbjct: 174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 7e-07
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 15/142 (10%)
Query: 88 GLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSN 147
L +++ +L + G++ L LDLSHN L P +L L +L++S N
Sbjct: 53 PYTRLTQLNLDRAEL-TKLQVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFN 110
Query: 148 SFEGTFPSG-FGGLGKLKYLDLRANRFGGDIMHL----LSQLGSVVHVDLSNNQFSGSLD 202
+ P G GLG+L+ L L+ N + L L+ + + L+NN + L
Sbjct: 111 RLT-SLPLGALRGLGELQELYLKGNE----LKTLPPGLLTPTPKLEKLSLANNNLT-ELP 164
Query: 203 LGLGDSSFISSIQYLNISENSL 224
GL + + ++ L + ENSL
Sbjct: 165 AGLLNG--LENLDTLLLQENSL 184
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 45/242 (18%), Positives = 94/242 (38%), Gaps = 26/242 (10%)
Query: 289 LSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCT---IVDLSNNRLSGD 345
+ +L + V ++ ++ +++ + S+ + + + L+ N+L+ D
Sbjct: 26 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLT-D 82
Query: 346 LSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELK 405
+ + N N + + L N + + +L S + +N + D+ L P+L+
Sbjct: 83 IKPLANLKN-LGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGIS-DING-LVHLPQLE 137
Query: 406 VIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLD 465
+ L N + + TKL L+L N S +PL + L +L
Sbjct: 138 SLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLAGLTK-----------LQNLY 184
Query: 466 LAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENL 525
L+ N +S L ++ NL L L + + + N + V + S V PE +
Sbjct: 185 LSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII 242
Query: 526 RN 527
+
Sbjct: 243 SD 244
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 4e-10
Identities = 45/244 (18%), Positives = 80/244 (32%), Gaps = 54/244 (22%)
Query: 86 IIGLKMLCNV---SVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLL 142
I ++ + + + S++ + +++ + GI L N+ L
Sbjct: 17 IFSDDAFAETIKDNLKKKSV-TDAVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKL 73
Query: 143 NISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHL--LSQLGSVVHVDLSNNQFSGS 200
++ N P L L +L L N+ + L L L + + L +N
Sbjct: 74 FLNGNKLTDIKP--LANLKNLGWLFLDENK----VKDLSSLKDLKKLKSLSLEHNG---- 123
Query: 201 LDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFV 260
IS I L + LE NN + I + +
Sbjct: 124 ----------ISDINGLV-----------------HLPQLESLYLGNNKITD-ITVLSRL 155
Query: 261 FSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLE--GPVGSITSATLKKVNLSS 318
L L L NQ+S +P+A L + L L LS N + + + + L + L S
Sbjct: 156 TKLDTLSLEDNQISDIVPLAGLTK----LQNLYLSKNHISDLRALAGLKN--LDVLELFS 209
Query: 319 NKLS 322
+
Sbjct: 210 QECL 213
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 9e-05
Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 14/103 (13%)
Query: 426 TKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNL 485
+ NL + + + E+ + + + + + + GI N+
Sbjct: 24 AETIKDNLKKKSVTDAVTQNELNS-----------IDQIIANNSDIKS--VQGIQYLPNV 70
Query: 486 VYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVP-ENLRN 527
L L+ NK P L + N + + ++L+
Sbjct: 71 TKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKK 113
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 5/110 (4%)
Query: 88 GLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSN 147
L L ++ + NN++ +IT + + L+ L L N + + L L L +S N
Sbjct: 132 HLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKN 188
Query: 148 SFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQF 197
GL L L+L + ++ S L V ++
Sbjct: 189 HISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 52/324 (16%), Positives = 96/324 (29%), Gaps = 80/324 (24%)
Query: 92 LCNVSVSNNQLMGN-ITDIG---------SIQSLEFLDLSHN---------LFHGLIPSG 132
+ S+ L + IT S++ + LS N L + +
Sbjct: 1 MARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENI--AS 58
Query: 133 IVSLKNLMLLNISSNSFEGTFPSGFGGLGK-------LKYLDLRANRFGGD----IMHLL 181
L+ +I + + P L + L + L N FG ++ L
Sbjct: 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFL 118
Query: 182 SQLGSVVHVDLSNNQFS--GSLDLG--------LGDSSFISSIQYLNISENSL------- 224
S+ + H+ L NN + + ++ + N L
Sbjct: 119 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178
Query: 225 VGELFPHDGMPYFDNLEVFDASNNHL--VGAIPSFNFVF----SLRILRLGSNQLS--GS 276
+ F L N + G L++L L N + GS
Sbjct: 179 WAKTFQS-----HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 233
Query: 277 LPVALLQESSMMLSELDLSLNQLEGPVGSI---------TSATLKKVNLSSNK------- 320
+A+ +S L EL L+ L G+ + L+ + L N+
Sbjct: 234 SALAIALKSWPNLRELGLNDCLL-SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR 292
Query: 321 -LSGSLPARVGHCTIVDLSNNRLS 343
L + ++ ++L+ NR S
Sbjct: 293 TLKTVIDEKMPDLLFLELNGNRFS 316
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 7e-10
Identities = 65/373 (17%), Positives = 117/373 (31%), Gaps = 73/373 (19%)
Query: 163 LKYLDLRANRFGGD----IMHLLSQLGSVVHVDLSNNQFS--GSLDLGLGDSSFISSIQY 216
++ L+ + + + +L + SV + LS N + L +S ++
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIAS-KKDLEI 64
Query: 217 LNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLS-- 274
S+ + + L+ A+ L +RL N
Sbjct: 65 AEFSDIFTG------------RVKDEIPEALRLLLQALLKCP---KLHTVRLSDNAFGPT 109
Query: 275 GSLPVALLQESSMMLSELDLSLNQLEGPVG--SITSATLKKVNLSSNKLSGSLPARVGHC 332
P+ L L L N L GP I A + K + L
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPL------- 161
Query: 333 TIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEG 392
+ NRL + S M+ W + ++ +++ + +E
Sbjct: 162 RSIICGRNRL-ENGS-MKEWAKTFQS-------------HRLLHTVKMVQNGIRPEGIEH 206
Query: 393 DLPAVLGTYPELKVIDLSLNHLN-------GFLLPSFFTSTKLTDLNLSGNNFS--GPLP 443
L L ELKV+DL N L S L +L L+ S G
Sbjct: 207 LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS---WPNLRELGLNDCLLSARGAAA 263
Query: 444 LQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGI-----SKFHNLVYLNLSNNKF--E 496
+ + + +N+ L +L L YN + + + K +L++L L+ N+F E
Sbjct: 264 VVD-----AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318
Query: 497 GSIPDGLPNGLKE 509
+ D +
Sbjct: 319 DDVVDEIREVFST 331
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 60.9 bits (147), Expect = 1e-09
Identities = 46/236 (19%), Positives = 78/236 (33%), Gaps = 26/236 (11%)
Query: 94 NVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTF 153
+ ++ D + + L +LS ++ S + S K L L + T
Sbjct: 330 ECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTI 388
Query: 154 PSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSS--FI 211
L L Y + + S L +V + + S L
Sbjct: 389 ILLMRALDPLLYEK--------ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY 440
Query: 212 SSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSN 271
+ ++ L+++ L L + + D S+N L P+ + L +L+ N
Sbjct: 441 ADVRVLHLAHKDLT-VL---CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN 496
Query: 272 QLSGSLPVALLQESSMMLSELDLSLNQLE-----GPVGSITSATLKKVNLSSNKLS 322
L VA L L EL L N+L+ P+ S L +NL N L
Sbjct: 497 ALENVDGVANLPR----LQELLLCNNRLQQSAAIQPLVSCPR--LVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 58.6 bits (141), Expect = 5e-09
Identities = 40/254 (15%), Positives = 77/254 (30%), Gaps = 22/254 (8%)
Query: 270 SNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARV 329
++QL + S + L S T L + LS K +
Sbjct: 310 NDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELE 369
Query: 330 GHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNS 389
+ +L L+ + ++ + L + +R +
Sbjct: 370 SCKELQELEPENKWCLLTIILL-MRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428
Query: 390 LEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQN 449
+ + Y +++V+ L+ L +L +T L+LS N L+ +
Sbjct: 429 FLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNR------LRAL-- 478
Query: 450 NPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPD-----GLP 504
L L + N+L + G++ L L L NN+ + P
Sbjct: 479 --PPALAALRCLEVLQASDNALEN--VDGVANLPRLQELLLCNNRLQ-QSAAIQPLVSCP 533
Query: 505 NGLKEFNVSFNNLS 518
L N+ N+L
Sbjct: 534 R-LVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 58.2 bits (140), Expect = 6e-09
Identities = 24/143 (16%), Positives = 48/143 (33%), Gaps = 11/143 (7%)
Query: 85 TIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNI 144
+ ++ + + L+ N + L L+H L + L + L++
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDL 470
Query: 145 SSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHL--LSQLGSVVHVDLSNNQFSGSLD 202
S N P L L+ L N + ++ ++ L + + L NN+
Sbjct: 471 SHNRLR-ALPPALAALRCLEVLQASDNA----LENVDGVANLPRLQELLLCNNRLQ-QSA 524
Query: 203 LGLGDSSFISSIQYLNISENSLV 225
+ + LN+ NSL
Sbjct: 525 -AIQPLVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 1e-06
Identities = 19/111 (17%), Positives = 45/111 (40%), Gaps = 11/111 (9%)
Query: 82 SFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLML 141
+ L ++ ++ +S+N+L + +++ LE L S N + G+ +L L
Sbjct: 455 VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV--DGVANLPRLQE 512
Query: 142 LNISSNSFEGTFPS--GFGGLGKLKYLDLRANRFGGD------IMHLLSQL 184
L + +N + + +L L+L+ N + + +L +
Sbjct: 513 LLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562
|
| >3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 738 EVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGY 796
EV+G+ C G K T ++G ++ +K L + ++ F +EVK + ++HPN++ G
Sbjct: 16 EVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGV 75
Query: 797 YWGPKEHEKLVISNYINAQSLAVYLQGKGLVL 828
+ K I+ YI +L ++
Sbjct: 76 LYKDKRL--NFITEYIKGGTLRGIIKSMDSQY 105
|
| >3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 5e-09
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+ + G L+K G+ + VK L+ + ++F E +L HPN++ + G
Sbjct: 16 TKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLG 74
Query: 796 YYWGPKEHEKLVISNYINAQSLAVYLQGK 824
P +I++++ SL L
Sbjct: 75 ACQSPPAPHPTLITHWMPYGSLYNVLHEG 103
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 7e-09
Identities = 30/198 (15%), Positives = 65/198 (32%), Gaps = 24/198 (12%)
Query: 331 HCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSL 390
+ +L ++ DL + V++ + ++ + + F L +S+N +
Sbjct: 20 NAVKQNLGKQSVT-DLVSQKELSG-VQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQI 75
Query: 391 EGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNN 450
DL L +L+ + ++ N L + S L+ L L N L ++N
Sbjct: 76 S-DLSP-LKDLTKLEELSVNRNRLKNL---NGIPSACLSRLFLDNNELRDTDSLIHLKN- 129
Query: 451 PSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIP-DGLPNGLKE 509
L L + N L + + L L+L N+ + L +
Sbjct: 130 ----------LEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEITNTGGLTRLKK-VNW 176
Query: 510 FNVSFNNLSGVVPENLRN 527
+++ +
Sbjct: 177 IDLTGQKCVNEPVKYQPE 194
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 2e-08
Identities = 34/206 (16%), Positives = 73/206 (35%), Gaps = 25/206 (12%)
Query: 96 SVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPS 155
S+ + + + + +L L L + N +++ +
Sbjct: 2 SIQRPTPINQVFPDPGLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNI--QSLA 57
Query: 156 GFGGLGKLKYLDLRANRFGGDIMHL--LSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISS 213
G LK L L N+ I L L L + + ++ N+ + +
Sbjct: 58 GMQFFTNLKELHLSHNQ----ISDLSPLKDLTKLEELSVNRNRLKNLNGIPS------AC 107
Query: 214 IQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQL 273
+ L + N L + + NLE+ NN L +I F+ L +L L N++
Sbjct: 108 LSRLFLDNNELR-DTDSLIHLK---NLEILSIRNNKLK-SIVMLGFLSKLEVLDLHGNEI 162
Query: 274 SGSLPVALLQESSMMLSELDLSLNQL 299
+ + + L++ ++ +DL+ +
Sbjct: 163 TNTGGLTRLKK----VNWIDLTGQKC 184
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 24/139 (17%), Positives = 56/139 (40%), Gaps = 17/139 (12%)
Query: 89 LKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNS 148
L + +S+NQ+ +++ + + LE L ++ N L + L L + +N
Sbjct: 62 FTNLKELHLSHNQIS-DLSPLKDLTKLEELSVNRNRLKNLNG---IPSACLSRLFLDNNE 117
Query: 149 FEGTFPSGFGGLGKLKYLDLRANRFGGDIMHL--LSQLGSVVHVDLSNNQFSGSLDLGLG 206
L L+ L +R N+ + + L L + +DL N+ + + L
Sbjct: 118 L--RDTDSLIHLKNLEILSIRNNK----LKSIVMLGFLSKLEVLDLHGNEITNTGGL--- 168
Query: 207 DSSFISSIQYLNISENSLV 225
+ + + +++++ V
Sbjct: 169 --TRLKKVNWIDLTGQKCV 185
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 9e-05
Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 17/104 (16%)
Query: 426 TKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNL 485
NL + + + +E+ + + + +++ L G+ F NL
Sbjct: 19 ANAVKQNLGKQSVTDLVSQKELSG-----------VQNFNGDNSNIQS--LAGMQFFTNL 65
Query: 486 VYLNLSNNKFEGSIP--DGLPNGLKEFNVSFNNLSGVVPENLRN 527
L+LS+N+ + L L+E +V+ N L +
Sbjct: 66 KELHLSHNQIS-DLSPLKDLTK-LEELSVNRNRLKNLNGIPSAC 107
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 12/99 (12%)
Query: 738 EVIGRSCHGTLYKATLDS-GSILAVKRLREG-------IAKGKKEFAREVKKLGNIKHPN 789
+ IG+ G ++K L S++A+K L G + + +EF REV + N+ HPN
Sbjct: 25 KQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPN 84
Query: 790 LVSLQGYYWGPKEHEKLVISNYINAQSLAVYLQGKGLVL 828
+V L G P ++ ++ L L K +
Sbjct: 85 IVKLYGLMHNP----PRMVMEFVPCGDLYHRLLDKAHPI 119
|
| >3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREG----IAKGKKEFAREVKKLGNIKHPNLVSL 793
E+IG G +Y+A G +AVK R I++ + +E K +KHPN+++L
Sbjct: 13 EIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIAL 71
Query: 794 QGYYWGPKEHEKLVISNYINAQSLAVYLQGKGL 826
+G ++ + L L GK +
Sbjct: 72 RGVCLKEPNL--CLVMEFARGGPLNRVLSGKRI 102
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 55/209 (26%), Positives = 87/209 (41%), Gaps = 26/209 (12%)
Query: 308 SATLKKVNLSSNKLSGSLPARV-GHCTIVDLSNNRLS----GDLSRMQNWGNYVEDIHLS 362
+ V+ SS KL+ ++P+ + +DL +N+LS R+ + ++L+
Sbjct: 15 NNNKNSVDCSSKKLT-AIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTK----LRLLYLN 69
Query: 363 SNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYP-ELKVIDLSLNHLNGFLLPS 421
N L + + L + V++N L+ LP + L + L N L L P
Sbjct: 70 DNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPR 127
Query: 422 FFTS-TKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGI- 479
F S TKLT L+L N LQ + T L L L N L R+ G
Sbjct: 128 VFDSLTKLTYLSLGYNE------LQSLPKGVFDKLTS---LKELRLYNNQLK-RVPEGAF 177
Query: 480 SKFHNLVYLNLSNNKFEGSIPDGLPNGLK 508
K L L L NN+ + +P+G + L+
Sbjct: 178 DKLTELKTLKLDNNQLK-RVPEGAFDSLE 205
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 5e-08
Identities = 59/225 (26%), Positives = 85/225 (37%), Gaps = 53/225 (23%)
Query: 129 IPSGI-VSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFG---GDIMHLLSQL 184
IPS I K L L SN F L KL+ L L N+ I L L
Sbjct: 31 IPSNIPADTKKLDL---QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87
Query: 185 GSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFD 244
+ +++N+ +L +G+ D + ++ L + N L + P VFD
Sbjct: 88 E---TLWVTDNKLQ-ALPIGVFDQ--LVNLAELRLDRNQL--KSLPPR---------VFD 130
Query: 245 ASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVAL---LQESSMMLSELDLSLNQLEG 301
L L L LG N+L SLP + L L EL L NQL+
Sbjct: 131 ----SLT----------KLTYLSLGYNELQ-SLPKGVFDKLTS----LKELRLYNNQLKR 171
Query: 302 -PVGSITSAT-LKKVNLSSNKLSGSLPA----RVGHCTIVDLSNN 340
P G+ T LK + L +N+L +P + ++ L N
Sbjct: 172 VPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 4e-07
Identities = 58/212 (27%), Positives = 82/212 (38%), Gaps = 40/212 (18%)
Query: 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSG-FGGLGKLKYLDLRANR 172
+ LDL N L L L LL ++ N + T P+G F L L+ L + N+
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96
Query: 173 FG---GDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELF 229
+ L L + L NQ SL + DS ++ + YL++ N L +
Sbjct: 97 LQALPIGVFDQLVNLA---ELRLDRNQLK-SLPPRVFDS--LTKLTYLSLGYNEL--QSL 148
Query: 230 PHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMML 289
P VFD L SL+ LRL +NQL +P + L
Sbjct: 149 PKG---------VFD----KLT----------SLKELRLYNNQLK-RVPEGAF-DKLTEL 183
Query: 290 SELDLSLNQLEG-PVGSITSAT-LKKVNLSSN 319
L L NQL+ P G+ S LK + L N
Sbjct: 184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 56/200 (28%), Positives = 78/200 (39%), Gaps = 30/200 (15%)
Query: 253 AIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG-PVGSITSAT- 310
AIPS N + L L SN+LS SLP L L L+ N+L+ P G
Sbjct: 30 AIPS-NIPADTKKLDLQSNKLS-SLPSKAFH-RLTKLRLLYLNDNKLQTLPAGIFKELKN 86
Query: 311 LKKVNLSSNKLSGSLPARVGHC----TIVDLSNNRLSG-------DLSRMQNWGNYVEDI 359
L+ + ++ NKL +LP V + L N+L L+++ +
Sbjct: 87 LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT-------YL 138
Query: 360 HLSSNFLTGMVPNQTSQFLRLTSFKV---SNNSLEGDLPAVLGTYPELKVIDLSLNHLNG 416
L N L +P F +LTS K NN L+ ELK + L N L
Sbjct: 139 SLGYNELQ-SLPKGV--FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195
Query: 417 FLLPSFFTSTKLTDLNLSGN 436
+F + KL L L N
Sbjct: 196 VPEGAFDSLEKLKMLQLQEN 215
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 3e-08
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGY- 796
EV R G ++KA L +AVK K + EV L +KH N++ G
Sbjct: 30 EVKARGRFGCVWKAQLL-NEYVAVKIFPIQ-DKQSWQNEYEVYSLPGMKHENILQFIGAE 87
Query: 797 YWGPKEH-EKLVISNYINAQSLAVYLQGKGL 826
G + +I+ + SL+ +L+ +
Sbjct: 88 KRGTSVDVDLWLITAFHEKGSLSDFLKANVV 118
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 5e-08
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYY 797
EV+GR G + KA +A+K++ +K F E+++L + HPN+V L G
Sbjct: 14 EVVGRGAFGVVCKAKWR-AKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGAC 70
Query: 798 WGP 800
P
Sbjct: 71 LNP 73
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 15/146 (10%)
Query: 88 GLKMLCNVSVSNNQLMGNITDIGS-----IQSLEFLDLSHNLFHGLIPSGIVSLKNLMLL 142
L L ++ +S+N + I S + +L +LDLS N H L L+ L +L
Sbjct: 62 RLTNLHSLLLSHNH----LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117
Query: 143 NISSNSFEGTFPSG-FGGLGKLKYLDLRANR---FGGDIMHLLSQLGSVVHVDLSNNQFS 198
+ +N F + +L+ L L N+ F +++ ++L ++ +DLS+N+
Sbjct: 118 LLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176
Query: 199 GSLDLGLGDSSFISSIQYLNISENSL 224
L L L + N L
Sbjct: 177 -KLPLTDLQKLPAWVKNGLYLHNNPL 201
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 5e-07
Identities = 37/185 (20%), Positives = 67/185 (36%), Gaps = 30/185 (16%)
Query: 129 IPSGIVSLKNLMLLNISSNSFEGTFPSG-FGGLGKLKYLDLRANRFGGDIMHL----LSQ 183
+P + LL++S N+ L L L L N + +
Sbjct: 33 VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH----LNFISSEAFVP 86
Query: 184 LGSVVHVDLSNNQFSGSLDLGLGDSSF--ISSIQYLNISEN---SLVGELFPHDGMPYFD 238
+ ++ ++DLS+N L + F + +++ L + N + F + M
Sbjct: 87 VPNLRYLDLSSNHLHT-----LDEFLFSDLQALEVLLLYNNHIVVVDRNAF--EDMA--- 136
Query: 239 NLEVFDASNNHL----VGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDL 294
L+ S N + V I N + L +L L SN+L L + + + + L L
Sbjct: 137 QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196
Query: 295 SLNQL 299
N L
Sbjct: 197 HNNPL 201
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 34/137 (24%)
Query: 425 STKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLS-LTSLDLAYNSLSGRLLPGI-SKF 482
+ L+LS NN + + + L+ L SL L++N L+ +
Sbjct: 38 PSYTALLDLSHNN---------LSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPV 87
Query: 483 HNLVYLNLSNNKFEGSIP----DGLPNGLKEFNVSFNNLSGVVPE--------------- 523
NL YL+LS+N ++ L L+ + N++ V
Sbjct: 88 PNLRYLDLSSNHLH-TLDEFLFSDLQA-LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145
Query: 524 -NLRNFPDSAFHPGNSL 539
+ FP GN L
Sbjct: 146 NQISRFPVELIKDGNKL 162
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 5e-05
Identities = 32/169 (18%), Positives = 61/169 (36%), Gaps = 25/169 (14%)
Query: 239 NLEVFDASNNHL--VGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSL 296
+ D S+N+L + A + + +L L L N L+ + L LDLS
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPN-LRYLDLSS 97
Query: 297 NQLEG-PVGSITSAT-LKKVNLSSNKLSGSLPARV----GHCTIVDLSNNRLS------- 343
N L + L+ + L +N + + + LS N++S
Sbjct: 98 NHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156
Query: 344 GDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEG 392
D +++ + + LSSN L + + +L ++ + L
Sbjct: 157 KDGNKLPK----LMLLDLSSNKLKKL---PLTDLQKLPAWVKNGLYLHN 198
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 42/176 (23%), Positives = 66/176 (37%), Gaps = 24/176 (13%)
Query: 308 SATLKKVNLSSNKLS----GSLPARVGHCTIVDLSNNRLS----GDLSRMQNWGNYVEDI 359
+ ++LS N LS P R+ + + LS+N L+ + N + +
Sbjct: 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN----LRYL 93
Query: 360 HLSSNFLTGMVPNQTSQFL-RLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGF- 417
LSSN L + L L + NN + +L+ + LS N ++ F
Sbjct: 94 DLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152
Query: 418 --LLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSL 471
L+ KL L+LS N LPL ++Q P+ L L N L
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLPA------WVKNGLYLHNNPL 201
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQG 795
E IG GT+++A GS +AVK L E A+ EF REV + ++HPN+V G
Sbjct: 43 EKIGAGSFGTVHRAEWH-GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMG 101
Query: 796 YYWGP 800
P
Sbjct: 102 AVTQP 106
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 14/112 (12%)
Query: 725 LMFTAEELSHAPA-----EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREV 779
+ A E S E+IGR +G +YK +LD +AVK ++ F E
Sbjct: 1 MEAAASEPSLDLDNLKLLELIGRGRYGAVYKGSLD-ERPVAVKVFSFA---NRQNFINEK 56
Query: 780 K--KLGNIKHPNLVSLQGY---YWGPKEHEKLVISNYINAQSLAVYLQGKGL 826
++ ++H N+ E L++ Y SL YL
Sbjct: 57 NIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHTS 108
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 9e-07
Identities = 94/674 (13%), Positives = 193/674 (28%), Gaps = 227/674 (33%)
Query: 180 LLSQLGSVVHVDLSNNQF-SGSLDLGLGDSSFI-SSIQYLNISENSLVGELFPHDGMPYF 237
LLS+ +V +F L + + F+ S I+ + S++ ++ +
Sbjct: 71 LLSKQEEMVQ------KFVEEVLRI---NYKFLMSPIKTEQR-QPSMMTRMYIEQRDRLY 120
Query: 238 DNLEVFDASNNHLVGAIPSFNFVFSLR--ILRLGSNQ---LSG-------SLPVALLQES 285
++ +VF N + LR +L L + + G + + +
Sbjct: 121 NDNQVFAKYN------VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 286 SMMLSELD-----LSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNN 340
+ ++D L+L P L+ + ++ + +R H + + L +
Sbjct: 175 KV-QCKMDFKIFWLNLKNCNSP-----ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 341 RLSGDLSRMQNWGNY---------VEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLE 391
+ +L R+ Y V++ + F N + + L T FK +
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF------NLSCKILLTTRFK----QVT 278
Query: 392 GDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNP 451
L A T+ L ++L L + + DL P + + NP
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-----------PREVLTTNP 327
Query: 452 STGSTQNLSLTSLDLAYNSLSGRLL-PGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEF 510
L S+ + G++ + N + +++ +K I
Sbjct: 328 -------RRL--------SIIAESIRDGLATWDN--WKHVNCDKLTTII----------- 359
Query: 511 NVSFNNLSGVVPENLRNFPDSAFHPGNSLLTFPNSPSQQDVPDLTLRGHGNHMKPATKIA 570
S N L P R F L FP I
Sbjct: 360 ESSLNVLE---PAEYRKM----FD---RLSVFPP-----SA----------------HIP 388
Query: 571 LIVGLVCGVTMVALLCMLIYFRALWQRHGRDSFKRDGEQKAFSEGSSSLSQRSGVNKKGD 630
I+ L + +W D K D + L + S V K+
Sbjct: 389 TIL-----------LSL------IWF----DVIKSDVMVVV-----NKLHKYSLVEKQPK 422
Query: 631 PSLSS---------------FTFHQDPLPSSPMESAYDAGETSSVVTKPKEL-------- 667
S S + H+ + + +D+ + P L
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI-----PPYLDQYFYSHI 477
Query: 668 -YHPDSVRKDEGLSS-PVSLLSSSNPSQSKNSRFTKN---SDVLNACSPEKLAGDL---- 718
+H ++ E ++ + L + RF + D + + L
Sbjct: 478 GHHLKNIEHPERMTLFRMVFL---------DFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 719 ----HLFDVSLMFTA-----EELSHAPAEVIGRSCHGTLYKATL--DSGSILAVKRLREG 767
++ D + + E + S + L + L + +I
Sbjct: 529 FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF-------- 580
Query: 768 IAKGKKEFAREVKK 781
+E ++V++
Sbjct: 581 -----EEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 1e-04
Identities = 88/482 (18%), Positives = 155/482 (32%), Gaps = 128/482 (26%)
Query: 22 EALLQLK----------KGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITCTNG----YV 67
+ALL+L+ G K +W ++ D C + + + C ++
Sbjct: 142 QALLELRPAKNVLIDGVLGSGK--------TW----VALDVC-LS-YKVQCKMDFKIFWL 187
Query: 68 TSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHG 127
+ N + P + L+ML + + + +D S L + L
Sbjct: 188 N---------LKNCNSPETV-LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 128 LI-PSGIVSLKNLMLLNISS----NSFEG-------TFPSG---FGGLGKLKYLDLRANR 172
L L L+LLN+ + N+F T F ++ L +
Sbjct: 238 LKSKPYENCL--LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 173 FGGDIMHLLSQLGSVVHV---DLSNNQFSGS-LDLGL-GDS--SFISSIQYL-------- 217
+ S L + DL + + L + +S +++
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 218 -NISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGS 276
I E+SL L P + FD L VF S + IP+ L ++ +
Sbjct: 356 TTIIESSL-NVLEPAEYRKMFDRLSVFPPSAH-----IPT----ILLSLIWFDVIK---- 401
Query: 277 LPVALLQESSMMLSEL-DLSL---NQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHC 332
+ +++++L SL E + SI S L+ N+ +L H
Sbjct: 402 ------SDVMVVVNKLHKYSLVEKQPKESTI-SIPSIYLELKVKLENEY--AL-----HR 447
Query: 333 TIVD---LSNNRLSGDLSRMQNWGNYV-EDI--HLSSNFLTGMVPNQTSQFLRLTSF--- 383
+IVD + S DL Y I HL + + FL F
Sbjct: 448 SIVDHYNIPKTFDSDDLIP-PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF-RFLEQ 505
Query: 384 KVSNNSLEGDLPA-VLGTYPELK-----------VIDLSLNHLNGFLLP--SFFTSTKLT 429
K+ ++S + +L T +LK + +N + FL +K T
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565
Query: 430 DL 431
DL
Sbjct: 566 DL 567
|
| >2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 738 EVIGRSCHGTLYKATLD-----SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVS 792
+ +G+ G++ D +G ++AVK+L+ + ++F RE++ L +++H N+V
Sbjct: 47 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 106
Query: 793 LQGYYWGPKEHEKLVISNYINAQSLAVYLQGKG 825
+G + +I Y+ SL YLQ
Sbjct: 107 YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHK 139
|
| >3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 20/93 (21%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 738 EVIGRSCHGTLYKATLD-----SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVS 792
+G+ G++ D +G+++AVK+L+ +++F RE++ L + +V
Sbjct: 29 SQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVK 88
Query: 793 LQGYYWGPKEHEKLVISNYINAQSLAVYLQGKG 825
+G +GP ++ Y+ + L +LQ
Sbjct: 89 YRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHR 121
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 98 SNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGF 157
S + + LEFL + + + + L L L +S N G
Sbjct: 27 SRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA 84
Query: 158 GGLGKLKYLDLRANRFGGDIMHL--LSQLGSVVHVDLSNN 195
L +L+L N+ D+ + L +L ++ +DL N
Sbjct: 85 EKCPNLTHLNLSGNKI-KDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 12/98 (12%)
Query: 400 TYPELKVIDLSLNHLNGFLLPSFFTS-TKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQN 458
T ++K + L + N L +L L+ L I N P
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG------LTSIANLPK-----L 63
Query: 459 LSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFE 496
L L+L+ N +SG L K NL +LNLS NK +
Sbjct: 64 NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101
|
| >3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 738 EVIGRSCHGTLYKATLD-----SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVS 792
+ +G+ G++ D +G ++AVK+L+ + ++F RE++ L +++H N+V
Sbjct: 16 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 75
Query: 793 LQGYYWGPKEHEKLVISNYINAQSLAVYLQGKG 825
+G + +I Y+ SL YLQ
Sbjct: 76 YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHK 108
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 98 SNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGF 157
+ +LEFL L + + S + L L L +S N G
Sbjct: 34 CKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA 91
Query: 158 GGLGKLKYLDLRANRFGGDIMHL--LSQLGSVVHVDLSNN 195
L L +L+L N+ DI L L +L + +DL N
Sbjct: 92 EKLPNLTHLNLSGNKL-KDISTLEPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-05
Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 12/98 (12%)
Query: 400 TYPELKVIDLSLNHLNGFLLPSFFTS-TKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQN 458
T ++ + L N + L L+L L + N P
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG------LISVSNLPK-----L 70
Query: 459 LSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFE 496
L L+L+ N + G L K NL +LNLS NK +
Sbjct: 71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 8e-04
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 370 VPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLT 429
+ T++F+ L + N L + + L P+LK ++LS N + G L LT
Sbjct: 41 IEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98
Query: 430 DLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLS 472
LNLSGN L+ ++ L SLDL ++
Sbjct: 99 HLNLSGNKLKDISTLEPLKKLE--------CLKSLDLFNCEVT 133
|
| >3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 5e-06
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+ IG G ++ + +A+K +REG A +++F E + + + HP LV L G
Sbjct: 14 QEIGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLVQLYG 70
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 7e-06
Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 26/146 (17%)
Query: 402 PELKVIDLSLNHLNGFLLPSFFTS-TKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLS 460
+ L+ N F +L +N S N + +I+ G++
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK------ITDIEEGAFEGASG--- 82
Query: 461 LTSLDLAYNSLSGRLLPGI-SKFHNLVYLNLSNNKFEGSIP----DGLPNGLKEFNVSFN 515
+ + L N L + + +L L L +N+ + GL + ++ ++ N
Sbjct: 83 VNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSS-VRLLSLYDN 139
Query: 516 NLSGVVPENLRNFPDSAFHPGNSLLT 541
++ V AF +SL T
Sbjct: 140 QITTV--------APGAFDTLHSLST 157
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 5e-05
Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 16/143 (11%)
Query: 355 YVEDIHLSSNFLTGMVPNQTSQFL-RLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNH 413
Y ++ L++N T + + L +L SNN + + I L+ N
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92
Query: 414 LNGFLLPS--FFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSL 471
L + F L L L N + + N+ G + + L L N +
Sbjct: 93 LEN--VQHKMFKGLESLKTLMLRSNR------ITCVGNDSFIGLSS---VRLLSLYDNQI 141
Query: 472 SGRLLPGI-SKFHNLVYLNLSNN 493
+ + PG H+L LNL N
Sbjct: 142 T-TVAPGAFDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
Query: 113 QSLEFLDLSHNLFHGLIPSGI-VSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRAN 171
Q L L++N F L +GI L L +N S+N F G + + L +N
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91
Query: 172 RFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSL 224
R + L S+ + L +N+ + + +SS++ L++ +N +
Sbjct: 92 RLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIG--LSSVRLLSLYDNQI 141
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 47/226 (20%), Positives = 75/226 (33%), Gaps = 61/226 (26%)
Query: 262 SLRILRLGSNQLSGSLPVAL---LQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSS 318
SLR L L +++ + L L E++L+ QL P G TL V L +
Sbjct: 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL-DPAGL---RTLLPVFLRA 128
Query: 319 NKLSGSLPARVGHCTIVDLSNNRLSGD----LSRMQNWGNYVEDIHLSSNFLTGMVPNQT 374
KL L N L + L + L +
Sbjct: 129 RKL--------------GLQLNSLGPEACKDLRDL-----------LLHDQCQ------- 156
Query: 375 SQFLRLTSFKVSNNSL--EG--DLPAVLGTYPELKVIDLSLNHLN----GFLLPSFFTST 426
+T+ ++SNN L G L L + + L L L +
Sbjct: 157 -----ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR 211
Query: 427 KLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLS 472
+L +LN++ N G + + + ++ SL L L +N LS
Sbjct: 212 QLQELNVAYNGA-GDTAALAL----ARAAREHPSLELLHLYFNELS 252
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 36/227 (15%), Positives = 62/227 (27%), Gaps = 54/227 (23%)
Query: 123 NLFHGLIPSGIVSL-----KNLMLLNISSNSFEGTFPSGFGGLGK--------LKYLDLR 169
+ +L LN++ P + L ++L
Sbjct: 53 DHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMT---PVKCTVVAAVLGSGRHALDEVNLA 109
Query: 170 ANRFGGD-IMHLLSQLGSVVHVDLSNNQFS--GSLDLGLGDSSFISSIQYLNISENSLVG 226
+ + + LL + L N DL I L +S N L
Sbjct: 110 SCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT- 168
Query: 227 ELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLS----GSLPVALL 282
A L+ + S+ L L L L L
Sbjct: 169 -----------------AAGVAVLMEGLAGNT---SVTHLSLLHTGLGDEGLELLAAQLD 208
Query: 283 QESSMMLSELDLSLNQLEGPVG--SITSA-----TLKKVNLSSNKLS 322
+ L EL+++ N G ++ A +L+ ++L N+LS
Sbjct: 209 RNRQ--LQELNVAYNGA-GDTAALALARAAREHPSLELLHLYFNELS 252
|
| >3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+ IG GT+YK G + AVK L + + F EV L +H N++ G
Sbjct: 30 QRIGSGSFGTVYKGKWH-GDV-AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMG 87
|
| >1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVK--RLREGIAKGKKEFAREVKKLGNIKHPNLVSLQ 794
IGR T+YK ++ +A + R+ ++ F E + L ++HPN+V
Sbjct: 32 IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFY 91
Query: 795 GYYWGPKEHEKLV--ISNYINAQSLAVYLQ 822
+ + +K + ++ + + +L YL+
Sbjct: 92 DSWESTVKGKKCIVLVTELMTSGTLKTYLK 121
|
| >3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+ +G G + +A+K ++EG + + EF E K + N+ H LV L G
Sbjct: 30 KELGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQLYG 86
|
| >2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGY 796
V+G+ +G +Y L + +A+K + E ++ + E+ ++KH N+V
Sbjct: 28 VVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQ---- 83
Query: 797 YWGPKEHE 804
Y G
Sbjct: 84 YLGSFSEN 91
|
| >2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQG 795
E+IG+ G +Y G + A++ + K F REV +H N+V G
Sbjct: 39 ELIGKGRFGQVYHGRWH-GEV-AIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMG 96
Query: 796 Y 796
Sbjct: 97 A 97
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 27/115 (23%)
Query: 386 SNNSLEGDLPAVLGTYPELKVIDLSLN------HLNGFLLPSFFTSTKLTDLNLSGNNFS 439
+E + A L T K + LS N L+G L L+L N
Sbjct: 33 MIPPIE-KMDATLSTLKACKHLALSTNNIEKISSLSGM--------ENLRILSLGRNL-- 81
Query: 440 GPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNK 494
+++I+N +L L ++YN ++ L GI K NL L +SNNK
Sbjct: 82 ----IKKIEN----LDAVADTLEELWISYNQIA--SLSGIEKLVNLRVLYMSNNK 126
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 4e-05
Identities = 23/138 (16%), Positives = 59/138 (42%), Gaps = 17/138 (12%)
Query: 105 NITDI----GSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGL 160
I + ++++ + L LS N + S + ++NL +L++ N + +
Sbjct: 36 PIEKMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KIENLDAVA 92
Query: 161 GKLKYLDLRANRFGGDIMHL--LSQLGSVVHVDLSNNQFSGSLDLG-LGDSSFISSIQYL 217
L+ L + N+ I L + +L ++ + +SNN+ + ++ L + ++ L
Sbjct: 93 DTLEELWISYNQ----IASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAA---LDKLEDL 145
Query: 218 NISENSLVGELFPHDGMP 235
++ N L + ++
Sbjct: 146 LLAGNPLYNDYKENNATS 163
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 7e-05
Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 9/113 (7%)
Query: 89 LKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSL-KNLMLLNISSN 147
LK ++++S N + I+ + +++L L L NL + + ++ L L IS N
Sbjct: 47 LKACKHLALSTNNI-EKISSLSGMENLRILSLGRNLIKKI--ENLDAVADTLEELWISYN 103
Query: 148 SFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHL--LSQLGSVVHVDLSNNQFS 198
SG L L+ L + N+ + + L+ L + + L+ N
Sbjct: 104 QIASL--SGIEKLVNLRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNPLY 153
|
| >3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 738 EVIGRSCHGTLYKATL----DSGSIL-AVKRLREG-IAKGKKEFAREVKKLGNIKHPNLV 791
+V+G GT+YK + I A+K LRE K KE E + ++ +P++
Sbjct: 21 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVC 80
Query: 792 SLQG 795
L G
Sbjct: 81 RLLG 84
|
| >4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 738 EVIGRSCHGTLYKATLD-----SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLV 791
+G G + D +G +AVK L+ + +E++ L N+ H N+V
Sbjct: 27 RDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIV 86
Query: 792 SLQG 795
+G
Sbjct: 87 KYKG 90
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 17/142 (11%)
Query: 356 VEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPA-VLGTYPELKVIDLSLNHL 414
+ +I L N + + P S + +L +SNN + +L L + L N +
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI 92
Query: 415 NGFLLPSFFTS-TKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNL-SLTSLDLAYNSLS 472
L S F L L L+ N + ++ + Q+L +L L L N L
Sbjct: 93 T-ELPKSLFEGLFSLQLLLLNANK------INCLRV----DAFQDLHNLNLLSLYDNKLQ 141
Query: 473 GRLLPGI-SKFHNLVYLNLSNN 493
+ G S + ++L+ N
Sbjct: 142 -TIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 5e-05
Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 11/111 (9%)
Query: 118 LDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSG-FGGLGKLKYLDLRANR---F 173
+ L N + P K L +++S+N F GL L L L N+
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITEL 95
Query: 174 GGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSL 224
+ L L + L+ N+ + L + + ++ L++ +N L
Sbjct: 96 PKSLFEGLFSL---QLLLLNANKIN-CLRVDAFQD--LHNLNLLSLYDNKL 140
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 26/153 (16%)
Query: 129 IPSGI-VSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHL----LSQ 183
IP+ + ++ + L N+ + P F KL+ +DL N+ I L
Sbjct: 26 IPTNLPETITEIRL---EQNTIKVIPPGAFSPYKKLRRIDLSNNQ----ISELAPDAFQG 78
Query: 184 LGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDN---L 240
L S+ + L N+ + L L + + S+Q L ++ N + D F + L
Sbjct: 79 LRSLNSLVLYGNKIT-ELPKSLFEG--LFSLQLLLLNANKI--NCLRVDA---FQDLHNL 130
Query: 241 EVFDASNNHLVGAIP--SFNFVFSLRILRLGSN 271
+ +N L I +F+ + +++ + L N
Sbjct: 131 NLLSLYDNKL-QTIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 20/131 (15%)
Query: 246 SNNHLVGAIPS--FNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG-P 302
N + IP F+ LR + L +NQ+S L Q L+ L L N++ P
Sbjct: 40 EQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLR-SLNSLVLYGNKITELP 96
Query: 303 VGSITSAT-LKKVNLSSNKLSGSLPARV----GHCTIVDLSNNRLS----GDLSRMQNWG 353
L+ + L++NK++ L + ++ L +N+L G S ++
Sbjct: 97 KSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA-- 153
Query: 354 NYVEDIHLSSN 364
++ +HL+ N
Sbjct: 154 --IQTMHLAQN 162
|
| >3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYY 797
+ +G G + +AVK ++EG + + EF +E + + + HP LV G
Sbjct: 14 KELGSGQFGVVKLGKWKGQYDVAVKMIKEG-SMSEDEFFQEAQTMMKLSHPKLVKFYGVC 72
Query: 798 WGPKEHEKLVISNYINAQSLAVYLQGKG 825
KE+ +++ YI+ L YL+ G
Sbjct: 73 --SKEYPIYIVTEYISNGCLLNYLRSHG 98
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 43/155 (27%), Positives = 61/155 (39%), Gaps = 16/155 (10%)
Query: 357 EDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPA-VLGTYPELKVIDLSLNHLN 415
E + L S L + +LT + N L+ L A V EL + L+ N L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLA 96
Query: 416 GFLLPSFFTS-TKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGR 474
L F T+L L L GN L+ + + T+ L L L N L
Sbjct: 97 -SLPLGVFDHLTQLDKLYLGGNQ------LKSLPSGVFDRLTK---LKELRLNTNQLQ-S 145
Query: 475 LLPGI-SKFHNLVYLNLSNNKFEGSIPDGLPNGLK 508
+ G K NL L+LS N+ + S+P G + L
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLG 179
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 4e-05
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 239 NLEVFDASNNHLVGAIPS--FNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSL 296
L + N L + + F+ + L L L +NQL+ SLP+ + L +L L
Sbjct: 60 KLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-SLPLGVFD-HLTQLDKLYLGG 116
Query: 297 NQLEG-PVGSITSAT-LKKVNLSSNKLSGSLPARV----GHCTIVDLSNNRL 342
NQL+ P G T LK++ L++N+L S+PA + + LS N+L
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 45/160 (28%), Positives = 56/160 (35%), Gaps = 35/160 (21%)
Query: 405 KVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNN--------FSGPLPLQE--IQNN---- 450
+ +DL L +F TKLT LNL N F L + NN
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 451 -PSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLV---YLNLSNNKFEGSIPDG---- 502
P L L L N L L G+ F L L L+ N+ + SIP G
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLK-SLPSGV--FDRLTKLKELRLNTNQLQ-SIPAGAFDK 153
Query: 503 LPNGLKEFNVSFNNLSGVVPENLRNFPDSAFHPGNSLLTF 542
L N L+ ++S N L V P AF L T
Sbjct: 154 LTN-LQTLSLSTNQLQSV--------PHGAFDRLGKLQTI 184
|
| >4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 3e-05
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 738 EVIGRSCHGTLYKATL-----DSGSIL-AVKRLREGIAKGKKEFAREVKKLGNIKHPNLV 791
+G G ++ A + +L AVK L+E +++F RE + L ++H ++V
Sbjct: 47 WELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIV 106
Query: 792 SLQG 795
G
Sbjct: 107 RFFG 110
|
| >1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQG 795
E +G G ++ + + +AVK L++G + F E + ++H LV L
Sbjct: 19 ERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRLYA 75
|
| >3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 738 EVIGRSCHGTLYKATL-----DSGSIL-AVKRLREGIAKGKKEFAREVKKLGNIKHPNLV 791
+G G ++ A +L AVK L++ +K+F RE + L N++H ++V
Sbjct: 21 RELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIV 80
Query: 792 SLQG 795
G
Sbjct: 81 KFYG 84
|
| >1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+ +G G ++ AT + + +AVK ++ G + + F E + ++H LV L
Sbjct: 194 KKLGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEAFLAEANVMKTLQHDKLVKLHA 250
|
| >1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+ IG+ G + G+ +AVK ++ + F E + ++H NLV L G
Sbjct: 199 QTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATA--QAFLAEASVMTQLRHSNLVQLLG 253
|
| >1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 4e-05
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+G+ C G ++ T + + +A+K L+ G + F +E + + ++H LV L
Sbjct: 190 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLVQLYA 246
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGY 796
E +G G +++ T +G+ A K + K+ +E++ + ++HP LV+L
Sbjct: 163 EELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDA 222
Query: 797 Y 797
+
Sbjct: 223 F 223
|
| >3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 738 EVIGRSCHGTLYKATL---DSGSIL-AVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVS 792
++IG G + L + A+K L+ G + +++F E +G HPN++
Sbjct: 55 KIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIR 114
Query: 793 LQG 795
L+G
Sbjct: 115 LEG 117
|
| >2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGY 796
E+IG G ++KA G +KR + ++ REVK L + H N+V G
Sbjct: 17 ELIGSGGFGQVFKAKHRIDGKTYVIKR----VKYNNEKAEREVKALAKLDHVNIVHYNGC 72
Query: 797 YWGPKEHEKLVISNYINAQSLAVYLQ 822
+ G + N +++ +++Q
Sbjct: 73 WDGFDYDPETSSKNSSRSKTKCLFIQ 98
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 53/231 (22%), Positives = 91/231 (39%), Gaps = 39/231 (16%)
Query: 312 KKVNLSSNKLSGSLPARV-GHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMV 370
+ + +S+ P +L ++ ++ QN N ++ I +++ + +
Sbjct: 1 ETITVSTPIKQ-IFPDDAFAETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ 57
Query: 371 P-NQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPS--FFTSTK 427
+ + N L D+ L L + L+ N L LP+ F T
Sbjct: 58 GIQYLPN---VRYLALGGNKLH-DIS-ALKELTNLTYLILTGNQLQS--LPNGVFDKLTN 110
Query: 428 LTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGI-SKFHNLV 486
L +L L N ++Q+ P + +LT L+LA+N L L G+ K NL
Sbjct: 111 LKELVLVEN---------QLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLT 160
Query: 487 YLNLSNNKFEGSIPDG----LPNGLKEFNVSFNNLSGVVPENLRNFPDSAF 533
L+LS N+ + S+P+G L LK+ + N L V PD F
Sbjct: 161 ELDLSYNQLQ-SLPEGVFDKLTQ-LKDLRLYQNQLKSV--------PDGVF 201
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 16/112 (14%)
Query: 239 NLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPV--ALLQESSMMLSELDLSL 296
+++ A+N+ + ++ ++ ++R L LG N+L + L L+ L L+
Sbjct: 42 SIDQIIANNSDIK-SVQGIQYLPNVRYLALGGNKLH-DISALKELTN-----LTYLILTG 94
Query: 297 NQLEG-PVGSITSAT-LKKVNLSSNKLSGSLPARVGHC----TIVDLSNNRL 342
NQL+ P G T LK++ L N+L SLP V T ++L++N+L
Sbjct: 95 NQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQL 145
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 51/215 (23%), Positives = 79/215 (36%), Gaps = 53/215 (24%)
Query: 94 NVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTF 153
++ + +T + S++ + +++ + GI L N+ L + N
Sbjct: 23 KANLKKKSVTDAVTQNE-LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKL--HD 77
Query: 154 PSGFGGLGKLKYLDLRANRFG---GDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSF 210
S L L YL L N+ + L+ L + L NQ SL G+ D
Sbjct: 78 ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK---ELVLVENQLQ-SLPDGVFDK-- 131
Query: 211 ISSIQYLNISENSLVGELFPHDGMPYFDNLE--VFDASNNHLVGAIPSFNFVFSLRILRL 268
++++ YLN++ N L +L VFD L +L L L
Sbjct: 132 LTNLTYLNLAHNQL-------------QSLPKGVFD----KLT----------NLTELDL 164
Query: 269 GSNQLSGSLPVA----LLQESSMMLSELDLSLNQL 299
NQL SLP L Q L +L L NQL
Sbjct: 165 SYNQLQ-SLPEGVFDKLTQ-----LKDLRLYQNQL 193
|
| >2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 5e-05
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+G+ C G ++ T + + +A+K L+ G + F +E + + ++H LV L
Sbjct: 273 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLVQLYA 329
|
| >1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 5e-05
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+ IG+ G + G+ +AVK ++ + F E + ++H NLV L G
Sbjct: 27 QTIGKGEFGDVMLGDYR-GNKVAVKCIKNDATA--QAFLAEASVMTQLRHSNLVQLLG 81
|
| >3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 738 EVIGRSCHGTLYKATL----DSGSIL-AVKRLREG-IAKGKKEFAREVKKLGNIKHPNLV 791
+V+G GT+YK + I A+K LRE K KE E + ++ +P++
Sbjct: 21 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVC 80
Query: 792 SLQG 795
L G
Sbjct: 81 RLLG 84
|
| >3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 7e-05
Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 738 EVIGRSCHGTLYKATLD-----SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLV 791
+G G + D +G ++AVK L+ + + + +E+ L + H +++
Sbjct: 37 RDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHII 96
Query: 792 SLQGYYWGPKEHEKLVISNYINAQSLAVYLQGKGL 826
+G ++ Y+ SL YL +
Sbjct: 97 KYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHSI 131
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 7e-05
Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 2/105 (1%)
Query: 94 NVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVS-LKNLMLLNISSNSFEGT 152
+ + + + ++ + ++L L + + + + L L L I +
Sbjct: 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71
Query: 153 FPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQF 197
P F +L L+L N + L S+ + LS N
Sbjct: 72 APDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 8e-05
Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 13/92 (14%)
Query: 419 LPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNL-SLTSLDLAYNSLSGRLLP 477
L + LT+L + LQ ++ + L L +L + + L + P
Sbjct: 24 LHHLPGAENLTELYIENQQ-----HLQHLEL----RDLRGLGELRNLTIVKSGLR-FVAP 73
Query: 478 GI-SKFHNLVYLNLSNNKFEGSIPDGLPNGLK 508
L LNLS N E S+ GL
Sbjct: 74 DAFHFTPRLSRLNLSFNALE-SLSWKTVQGLS 104
|
| >3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 7e-05
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVK--KLGNIKHPNLVSLQG 795
E +G+ +G +++ + G +AVK + +K + RE + ++H N++
Sbjct: 14 ECVGKGRYGEVWRGSWQ-GENVAVKIFSS---RDEKSWFRETELYNTVMLRHENILGFIA 69
Query: 796 Y-YWGPKEHEKL-VISNYINAQSLAVYLQGKGL 826
+L +I++Y SL YLQ L
Sbjct: 70 SDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTL 102
|
| >3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 8e-05
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 738 EVIGRSCHGTLYKATLDSGSIL-AVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+G +G +Y+ S+ AVK L+E +EF +E + IKHPNLV L G
Sbjct: 19 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLG 76
|
| >1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 8e-05
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGY 796
E +G G +++ +G + K + K E+ + + HP L++L
Sbjct: 57 EELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDA 116
Query: 797 Y 797
+
Sbjct: 117 F 117
|
| >3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 8e-05
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 707 NACSPEKLAGDLHLFDVSLMFTAEELSHAPAEVIGRSCHGTLYKATLDSGSILAVKRLRE 766
++ S E+ GD + + + ++S P +V+G GT+ + +AVKR
Sbjct: 3 SSPSLEQDDGD----EETSVVIVGKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKR--- 55
Query: 767 GIAKGKKEFA-REVKKLGNI-KHPNLVSLQGYY 797
I FA REV+ L +HPN++
Sbjct: 56 -ILPECFSFADREVQLLRESDEHPNVIRYFCTE 87
|
| >3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 8e-05
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 738 EVIGRSCHGTLYKATLDSGSIL----AVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVS 792
++G G +Y+ + AVK ++ K++F E + N+ HP++V
Sbjct: 18 RILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVK 77
Query: 793 LQG 795
L G
Sbjct: 78 LIG 80
|
| >1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 9e-05
Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 738 EVIGRSCHGTLYKATL---DSGSIL-AVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVS 792
IG G +++ ++ ++ A+K + +++F +E + HP++V
Sbjct: 21 RCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVK 80
Query: 793 LQG 795
L G
Sbjct: 81 LIG 83
|
| >2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGY 796
E++G G ++K +G LA K ++ K K+E E+ + + H NL+ L
Sbjct: 95 EILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDA 154
Query: 797 Y 797
+
Sbjct: 155 F 155
|
| >2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 23/161 (14%), Positives = 51/161 (31%), Gaps = 11/161 (6%)
Query: 639 HQDPLPSSPMESAYDAGETSSVVTKPKELYHPDSVRKDEGLSSPVSLLSSSNPSQSKNSR 698
++ P+S +A A + + + ++P + +
Sbjct: 250 LKEACPNSSASNASGAAAPTLPAHPSTLTHPQRRIDTLNSDGYTPEPARITSPDKPRPMP 309
Query: 699 FTKNSDVLNACSPEKLAGDLHLFDVSLMFTAEELSHAPAEVIGRSCHGTLYKATL--DSG 756
+ PE+L + A+ +G G++ +
Sbjct: 310 MDTSVFESPFSDPEELKDKKLFLKRDNLLIADI-------ELGCGNFGSVRQGVYRMRKK 362
Query: 757 SIL-AVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQG 795
I A+K L++G +E RE + + + +P +V L G
Sbjct: 363 QIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIG 403
|
| >1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 740 IGRSCHGTLYKATL--DSGSIL-AVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+G G++ + I A+K L++G +E RE + + + +P +V L G
Sbjct: 18 LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIG 77
|
| >2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 738 EVIGRSCHGTLYKATL---DSGSIL-AVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVS 792
IG G +++ ++ ++ A+K + +++F +E + HP++V
Sbjct: 396 RCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVK 455
Query: 793 LQG 795
L G
Sbjct: 456 LIG 458
|
| >3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 738 EVIGRSCHGTLYKATLDSGS----ILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVS 792
EVIGR G +Y TL AVK L +F E + + HPN++S
Sbjct: 31 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 90
Query: 793 LQG 795
L G
Sbjct: 91 LLG 93
|
| >1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 738 EVIGRSCHGTLYKATLDSGSIL-AVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+G +G +Y+ S+ AVK L+E +EF +E + IKHPNLV L G
Sbjct: 226 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLG 283
|
| >3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 738 EVIGRSCHGTLYKATL----DSGSIL-AVKRLREGI-AKGKKEFAREVKKLGNIKHPNLV 791
+V+G GT++K +S I +K + + + + + +G++ H ++V
Sbjct: 19 KVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIV 78
Query: 792 SLQG 795
L G
Sbjct: 79 RLLG 82
|
| >2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 738 EVIGRSCHGTLYKATL---DSGSIL-AVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVS 792
+V+G G + L I A+K L+ G K +++F E +G HPN++
Sbjct: 51 KVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIR 110
Query: 793 LQG 795
L+G
Sbjct: 111 LEG 113
|
| >3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 738 EVIGRSCHGTLYKATL----DSGSILAVKRLREGIA--KGKKEFAREVKKLGNIKHPNLV 791
+++G G++ + L + +AVK ++ + + +EF E + + HPN++
Sbjct: 40 KILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVI 99
Query: 792 SLQG 795
L G
Sbjct: 100 RLLG 103
|
| >1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 738 EVIGRSCHGTLYKATLDSGSIL----AVKRLREGI---AKGKKEFAREVKKLGNIKHPNL 790
E +G G + + D+ S AVK L+ + + +F REV + ++ H NL
Sbjct: 24 EKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNL 83
Query: 791 VSLQG 795
+ L G
Sbjct: 84 IRLYG 88
|
| >3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 738 EVIGRSCHGTLYKATL---DSGSIL-AVKRLREGIA--KGKKEFAREVKKLGNIKHPNLV 791
++G+ G++ +A L D + AVK L+ I +EF RE + HP++
Sbjct: 29 RMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVA 88
Query: 792 SLQG 795
L G
Sbjct: 89 KLVG 92
|
| >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAK-GKKEFA-REVKKLGNIKHPNLVSLQ 794
++G +G + K D+G I+A+K+ E K+ A RE+K L ++H NLV+L
Sbjct: 31 GLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLL 90
|
| >1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 738 EVIGRSCHGTLYKATLDSGSIL---AVKRLREGI-AKGKKEFAREVKKLGNI-KHPNLVS 792
+VIG G + KA + + A+KR++E ++FA E++ L + HPN+++
Sbjct: 31 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 90
Query: 793 LQG 795
L G
Sbjct: 91 LLG 93
|
| >1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 739 VIGRSCHGTLYKATLDSGSIL---AVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSL 793
+G GT+ K ++ AVK L+ K E E + + +P +V +
Sbjct: 24 ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRM 83
Query: 794 QG 795
G
Sbjct: 84 IG 85
|
| >1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 738 EVIGRSCHGTLYKATLDSGSIL-----AVKRLREG-IAKGKKEFAREVKKLGNIKHPNLV 791
+VIG G +YK L + S A+K L+ G K + +F E +G H N++
Sbjct: 50 KVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNII 109
Query: 792 SLQG 795
L+G
Sbjct: 110 RLEG 113
|
| >4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 8/66 (12%)
Query: 738 EVIGRSCHGTLYKATLDSGSIL--------AVKRLREGIAKGKKEFAREVKKLGNIKHPN 789
E +G+ ++K +K L + + F + + H +
Sbjct: 14 ESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKH 73
Query: 790 LVSLQG 795
LV G
Sbjct: 74 LVLNYG 79
|
| >3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGY 796
IGR G + A + A K++ + + F +E++ + ++ HPN++ L
Sbjct: 15 NTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYET 74
Query: 797 Y 797
+
Sbjct: 75 F 75
|
| >3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 738 EVIGRSCHGTLYKATL---DSGSIL-AVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVS 792
EVIGR G +Y TL D I AVK L +F E + + HPN++S
Sbjct: 95 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 154
Query: 793 LQG 795
L G
Sbjct: 155 LLG 157
|
| >3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 8/91 (8%)
Query: 738 EVIGRSCHGTLYKATLDS--GSILAVKRLREGIAKG---KKEFAREVKKLGNIKHPNLVS 792
G ++A D+ +A+ + +E +L I P +
Sbjct: 37 IFHGGVPPLQFWQAL-DTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVAR 95
Query: 793 LQGYYWGPKEHEKLVISNYINAQSLAVYLQG 823
+ LV++ +I SL
Sbjct: 96 V--LDVVHTRAGGLVVAEWIRGGSLQEVADT 124
|
| >1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFARE--VKKLGNIKHPNLVSLQG 795
E IG+ G +++ G +AVK + ++ + RE + + ++H N++
Sbjct: 48 ESIGKGRFGEVWRGKWR-GEEVAVKIFSS---REERSWFREAEIYQTVMLRHENILGFIA 103
Query: 796 YYWGPKEHEK--LVISNYINAQSLAVYLQGKGL 826
++S+Y SL YL +
Sbjct: 104 ADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTV 136
|
| >4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAK-GKKEFA-REVKKLGNIKHPNLVSLQ 794
IG +G ++K D+G I+A+K+ E K+ A RE++ L +KHPNLV+L
Sbjct: 9 GKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLL 68
|
| >3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVK-----RLREGIAKGKKEFAREVKKLGNIKHPNLV 791
EVIG+ + + ++G AVK + ++ RE +KHP++V
Sbjct: 30 EVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIV 89
Query: 792 SLQGYY 797
L Y
Sbjct: 90 ELLETY 95
|
| >3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 738 EVIGRSCHGTLYKATL-----DSGSIL-AVKRLREGI-AKGKKEFAREVKKLGNIKHPNL 790
E +G G +YK L + A+K L++ ++EF E ++HPN+
Sbjct: 15 EELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNV 74
Query: 791 VSLQG 795
V L G
Sbjct: 75 VCLLG 79
|
| >3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 738 EVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFA----REVKKLGNIKHPNLVS 792
+ G+ GT+ +G +A+K++ + F + ++ L + HPN+V
Sbjct: 29 RMAGQGTFGTVQLGKEKSTGMSVAIKKVIQ-----DPRFRNRELQIMQDLAVLHHPNIVQ 83
Query: 793 LQGYYWGPKEHEK 805
LQ Y++ E ++
Sbjct: 84 LQSYFYTLGERDR 96
|
| >1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 738 EVIGRSCHGTLYKATL-----DSGSIL-AVKRLREGI-AKGKKEFAREVKKLGNIKHPNL 790
IG G +++A + AVK L+E A + +F RE + +PN+
Sbjct: 53 RDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNI 112
Query: 791 VSLQG 795
V L G
Sbjct: 113 VKLLG 117
|
| >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 5e-04
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFA-REVKKLGNIK-HPNLVSLQG 795
+++G GT+ G +AVKR + + A E+K L HPN++
Sbjct: 21 KILGYGSSGTVVFQGSFQGRPVAVKR----MLIDFCDIALMEIKLLTESDDHPNVIRYYC 76
Query: 796 YY 797
Sbjct: 77 SE 78
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 12/95 (12%)
Query: 400 TYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNL 459
T + ID S N + L F +L L ++ N + I
Sbjct: 40 TLDQFDAIDFSDNEIRK--LDGFPLLRRLKTLLVNNNR------ICRIGEGLDQALP--- 88
Query: 460 SLTSLDLAYNSLSG-RLLPGISKFHNLVYLNLSNN 493
LT L L NSL L ++ +L YL + N
Sbjct: 89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 5e-04
Identities = 25/85 (29%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 730 EELSHAPAEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHP 788
+E+S+ +VIG G +Y+A L DSG ++A+K+ + + K+ RE++ + + H
Sbjct: 52 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK----VLQDKRFKNRELQIMRKLDHC 107
Query: 789 NLVSLQGYYWGPKEHEKLVISNYIN 813
N+V L+ +++ E + V Y+N
Sbjct: 108 NIVRLRYFFYSSGEKKDEV---YLN 129
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 22/132 (16%)
Query: 405 KVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSL 464
+++ L N + F + L +L L N ++ P LT L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSN---------QLGALPVGVFDSLTQLTVL 93
Query: 465 DLAYNSLSGRLLPGI-SKFHNLVYLNLSNNKFEGSIPDGLPN--GLKEFNVSFNNLSGVV 521
DL N L+ L + + +L L + NK +P G+ L + N L +
Sbjct: 94 DLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSI- 150
Query: 522 PENLRNFPDSAF 533
P AF
Sbjct: 151 -------PHGAF 155
|
| >3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 5e-04
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 738 EVIGRSCHGTLYKATLDSGSIL-AVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQG 795
E IGR G ++ L + + L AVK RE + K +F +E + L HPN+V L G
Sbjct: 120 EQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIG 179
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 43/140 (30%), Positives = 58/140 (41%), Gaps = 25/140 (17%)
Query: 405 KVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSL 464
+DL N L F T LT L L GN ++Q+ P+ + SLT L
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGN---------KLQSLPNGVFNKLTSLTYL 81
Query: 465 DLAYNSLSGRLLPGI-SKFHNLVYLNLSNNKFEGSIPDG----LPNGLKEFNVSFNNLSG 519
+L+ N L L G+ K L L L+ N+ + S+PDG L LK+ + N L
Sbjct: 82 NLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQ-LKDLRLYQNQLKS 138
Query: 520 VVPENLRNFPDSAFHPGNSL 539
V PD F SL
Sbjct: 139 V--------PDGVFDRLTSL 150
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 41.9 bits (97), Expect = 6e-04
Identities = 21/144 (14%), Positives = 45/144 (31%), Gaps = 24/144 (16%)
Query: 162 KLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISE 221
LK L++ + + + ++ DL N + L L +G +
Sbjct: 194 NLKSLEIISGGLPDSV------VEDILGSDLPNLE---KLVLYVGVE---------DYGF 235
Query: 222 NSLVGELFPHDGMPYFDNLEVFDASNNHL----VGAIPSFNFVFSLRILRLGSNQLSGSL 277
+ + P F NL+ + V + + L + + + L+
Sbjct: 236 DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG 295
Query: 278 PVALLQESSMM--LSELDLSLNQL 299
LL + L +++ N L
Sbjct: 296 ARLLLDHVDKIKHLKFINMKYNYL 319
|
| >3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 7e-04
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVK-----RLREGIAKGKKEFAREVKKLGNIKHPNLV 791
IG+ +G + A + +I A+K ++R+ K + EV+ + + HPN+
Sbjct: 32 GAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIA 91
Query: 792 SLQGYY 797
L Y
Sbjct: 92 RLYEVY 97
|
| >2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 738 EVIGRSCHGTLYKATL-----DSGSIL-AVKRLREG-IAKGKKEFAREVKKLGNIKHPNL 790
+G G +Y+ + D + AVK L E + + +F E + H N+
Sbjct: 36 RGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNI 95
Query: 791 VSLQG 795
V G
Sbjct: 96 VRCIG 100
|
| >3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 738 EVIGRSCHGTLYKATL---DSGSIL-AVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVS 792
VIG+ G +Y I A+K L + + F RE + + HPN+++
Sbjct: 27 RVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLA 86
Query: 793 LQG 795
L G
Sbjct: 87 LIG 89
|
| >3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 8e-04
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 738 EVIGRSCHGTLYKATL-----DSGSIL-AVKRLREG-IAKGKKEFAREVKKLGNIKHPNL 790
+G G +Y+ + D + AVK L E + + +F E + H N+
Sbjct: 77 RGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNI 136
Query: 791 VSLQG 795
V G
Sbjct: 137 VRCIG 141
|
| >2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 8e-04
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGY 796
EV+G ++ +G + A+K +++ A E+ L IKH N+V+L+
Sbjct: 15 EVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDI 74
Query: 797 Y 797
Y
Sbjct: 75 Y 75
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 832 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.95 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.95 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.95 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.95 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.94 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.94 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.94 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.94 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.93 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.93 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.93 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.92 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.92 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.92 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.92 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.91 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.89 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.89 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.89 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.89 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.89 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.88 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.87 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.87 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.87 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.87 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.87 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.87 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.86 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.86 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.86 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.85 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.84 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.84 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.84 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.84 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.84 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.83 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.82 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.81 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.81 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.8 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.8 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.79 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.79 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.79 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.77 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.77 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.76 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.76 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.75 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.74 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.74 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.74 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.73 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.72 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.71 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.71 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.7 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.68 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.68 | |
| 4asz_A | 299 | BDNF/NT-3 growth factors receptor; transferase, TR | 99.68 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.68 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.68 | |
| 4aoj_A | 329 | High affinity nerve growth factor receptor; transf | 99.67 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.67 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.65 | |
| 4gt4_A | 308 | Tyrosine-protein kinase transmembrane receptor RO; | 99.63 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.61 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.61 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.59 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.59 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.59 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.58 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.58 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.57 | |
| 3omv_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 99.55 | |
| 3fpq_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 99.55 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.54 | |
| 4b9d_A | 350 | Serine/threonine-protein kinase NEK1; transferase, | 99.54 | |
| 3hmm_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 99.53 | |
| 4aw0_A | 311 | HPDK1, 3-phosphoinositide-dependent protein kinase | 99.53 | |
| 4fih_A | 346 | Serine/threonine-protein kinase PAK 4; kinase doma | 99.53 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.52 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.5 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.5 | |
| 4fie_A | 423 | Serine/threonine-protein kinase PAK 4; kinase doma | 99.49 | |
| 4g3f_A | 336 | NF-kappa-beta-inducing kinase; non-RD kinase, prot | 99.49 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.48 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.48 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.47 | |
| 4g31_A | 299 | Eukaryotic translation initiation factor 2-alpha; | 99.46 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.45 | |
| 3hyh_A | 275 | Carbon catabolite-derepressing protein kinase; kin | 99.45 | |
| 4ase_A | 353 | Vascular endothelial growth factor receptor 2; tra | 99.44 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.43 | |
| 3ubd_A | 304 | Ribosomal protein S6 kinase alpha-3; kinase-inhibi | 99.42 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.41 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.39 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.37 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.37 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.36 | |
| 4b99_A | 398 | Mitogen-activated protein kinase 7; transferase, i | 99.35 | |
| 3uto_A | 573 | Twitchin; kinase, muscle sarcomere, transferase; H | 99.32 | |
| 3s95_A | 310 | LIMK-1, LIM domain kinase 1; structural genomics, | 99.29 | |
| 3v5w_A | 689 | G-protein coupled receptor kinase 2; inhibitor com | 99.28 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.28 | |
| 2c30_A | 321 | Serine/threonine-protein kinase PAK 6; CRIB domain | 99.24 | |
| 2yab_A | 361 | Death-associated protein kinase 2; apoptosis, tran | 99.23 | |
| 2qkw_B | 321 | Protein kinase; three-helix bundle motif, AVRPTO-P | 99.23 | |
| 2qol_A | 373 | Ephrin receptor; receptor tyrosine kinase, juxtame | 99.22 | |
| 3fe3_A | 328 | MAP/microtubule affinity-regulating kinase 3; seri | 99.22 | |
| 3zgw_A | 347 | Maternal embryonic leucine zipper kinase; transfer | 99.21 | |
| 3fxz_A | 297 | Serine/threonine-protein kinase PAK 1; transferase | 99.2 | |
| 2y0a_A | 326 | Death-associated protein kinase 1; transferase, ca | 99.19 | |
| 3f3z_A | 277 | Calcium/calmodulin-dependent protein kinase with d | 99.19 | |
| 2x4f_A | 373 | Myosin light chain kinase family member 4; LUNG, b | 99.18 | |
| 3ugc_A | 295 | Tyrosine-protein kinase JAK2; small molecule inhib | 99.18 | |
| 4eqm_A | 294 | Protein kinase; transferase; HET: ANP; 3.00A {Stap | 99.18 | |
| 3kul_A | 325 | Ephrin type-A receptor 8; ATP-binding, kinase, nuc | 99.18 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.18 | |
| 1o6l_A | 337 | RAC-beta serine/threonine protein kinase; protein | 99.18 | |
| 4aw2_A | 437 | Serine/threonine-protein kinase MRCK alpha; transf | 99.18 | |
| 2bdw_A | 362 | Hypothetical protein K11E8.1D; kinase, calmodulin | 99.18 | |
| 3uim_A | 326 | Brassinosteroid insensitive 1-associated receptor; | 99.18 | |
| 4hcu_A | 269 | Tyrosine-protein kinase ITK/TSK; transferase-trans | 99.17 | |
| 2ac3_A | 316 | MAP kinase-interacting serine/threonine kinase 2; | 99.17 | |
| 3p86_A | 309 | Serine/threonine-protein kinase CTR1; ETR1, ERS1, | 99.17 | |
| 1fot_A | 318 | TPK1 delta, CAMP-dependent protein kinase type 1; | 99.17 | |
| 3kn6_A | 325 | Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1 | 99.17 | |
| 1kob_A | 387 | Twitchin; kinase, intrasteric regulation; 2.30A {A | 99.16 | |
| 4fvq_A | 289 | Tyrosine-protein kinase JAK2; janus protein kinase | 99.16 | |
| 2w4o_A | 349 | Calcium/calmodulin-dependent protein kinase type I | 99.16 | |
| 3kmu_A | 271 | ILK, integrin-linked kinase; cell adhesion, ANK re | 99.16 | |
| 4euu_A | 319 | Serine/threonine-protein kinase TBK1; ATP binding, | 99.15 | |
| 1tki_A | 321 | Titin; serine kinase, muscle, autoinhibition; 2.00 | 99.15 | |
| 4f9c_A | 361 | Cell division cycle 7-related protein kinase; Ser/ | 99.15 | |
| 3cbl_A | 377 | C-FES, proto-oncogene tyrosine-protein kinase FES/ | 99.15 | |
| 3a8x_A | 345 | Protein kinase C IOTA type; transferase; HET: TPO; | 99.15 | |
| 3sxs_A | 268 | Cytoplasmic tyrosine-protein kinase BMX; transfera | 99.15 | |
| 2nru_A | 307 | Interleukin-1 receptor-associated kinase 4; inhibi | 99.14 | |
| 3a62_A | 327 | Ribosomal protein S6 kinase beta-1; kinase domain, | 99.14 | |
| 2jam_A | 304 | Calcium/calmodulin-dependent protein kinase type 1 | 99.14 | |
| 3gen_A | 283 | Tyrosine-protein kinase BTK; bruton'S tyrosine kin | 99.14 | |
| 3qd2_B | 332 | Eukaryotic translation initiation factor 2-alpha; | 99.14 | |
| 3uc3_A | 361 | Serine/threonine-protein kinase SRK2I; SNRK2, ABA | 99.14 | |
| 4fr4_A | 384 | YANK1, serine/threonine-protein kinase 32A; struct | 99.14 | |
| 2psq_A | 370 | Fibroblast growth factor receptor 2; kinase domain | 99.13 | |
| 2rku_A | 294 | Serine/threonine-protein kinase PLK1; structure of | 99.13 | |
| 3lxl_A | 327 | Tyrosine-protein kinase JAK3; TYK2, inflammation, | 99.13 | |
| 3tki_A | 323 | Serine/threonine-protein kinase CHK1; cell checkpo | 99.13 | |
| 2a2a_A | 321 | Death-associated protein kinase 2; autoinhibition, | 99.13 | |
| 3bhy_A | 283 | Death-associated protein kinase 3; death associate | 99.12 | |
| 3uqc_A | 286 | Probable conserved transmembrane protein; structur | 99.12 | |
| 3soa_A | 444 | Calcium/calmodulin-dependent protein kinase type a | 99.12 | |
| 1k9a_A | 450 | Carboxyl-terminal SRC kinase; COOH-terminal SRC ki | 99.12 | |
| 3txo_A | 353 | PKC-L, NPKC-ETA, protein kinase C ETA type; phosph | 99.12 | |
| 1luf_A | 343 | Muscle-specific tyrosine kinase receptor MUSK; pho | 99.12 | |
| 3soc_A | 322 | Activin receptor type-2A; structural genomics cons | 99.11 | |
| 3eqc_A | 360 | Dual specificity mitogen-activated protein kinase; | 99.11 | |
| 1xjd_A | 345 | Protein kinase C, theta type; PKC-theta, ATP, AMP, | 99.11 | |
| 1rdq_E | 350 | PKA C-alpha, CAMP-dependent protein kinase, alpha- | 99.11 | |
| 2clq_A | 295 | Mitogen-activated protein kinase kinase kinase 5; | 99.11 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.11 | |
| 3t9t_A | 267 | Tyrosine-protein kinase ITK/TSK; kinase domain, al | 99.1 | |
| 2vd5_A | 412 | DMPK protein; serine/threonine-protein kinase, kin | 99.1 | |
| 2j7t_A | 302 | Serine/threonine-protein kinase 10; transferase, A | 99.1 | |
| 3gni_B | 389 | Strad alpha; kinase fold, pseudokinase, alpha heli | 99.1 | |
| 3kk8_A | 284 | Calcium/calmodulin dependent protein kinase II; AT | 99.1 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.1 | |
| 3c0i_A | 351 | Peripheral plasma membrane protein CASK; neurexin, | 99.1 | |
| 2owb_A | 335 | Serine/threonine-protein kinase PLK1; catalytic do | 99.1 | |
| 1opk_A | 495 | P150, C-ABL, proto-oncogene tyrosine-protein kinas | 99.1 | |
| 4eut_A | 396 | Serine/threonine-protein kinase TBK1; ATP binding, | 99.1 | |
| 3is5_A | 285 | Calcium-dependent protein kinase; CDPK, structural | 99.1 | |
| 1qcf_A | 454 | Haematopoetic cell kinase (HCK); tyrosine kinase-i | 99.09 | |
| 3v8s_A | 410 | RHO-associated protein kinase 1; dimerization, myo | 99.09 | |
| 2y94_A | 476 | 5'-AMP-activated protein kinase catalytic subunit; | 99.09 | |
| 3q5i_A | 504 | Protein kinase; CDPK, malaria, phosphotransferase, | 99.09 | |
| 4dc2_A | 396 | Protein kinase C IOTA type; kinase, substrate, cel | 99.09 | |
| 3ork_A | 311 | Serine/threonine protein kinase; structural genomi | 99.09 | |
| 2ivs_A | 314 | Proto-oncogene tyrosine-protein kinase receptor RE | 99.09 | |
| 3fdn_A | 279 | Serine/threonine-protein kinase 6; aurora kinase i | 99.08 | |
| 4fl3_A | 635 | Tyrosine-protein kinase SYK; transferase; HET: ANP | 99.07 | |
| 2buj_A | 317 | Serine/threonine-protein kinase 16; transferase, A | 99.07 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.07 | |
| 4agu_A | 311 | Cyclin-dependent kinase-like 1; transferase, phosp | 99.07 | |
| 3nyv_A | 484 | Calmodulin-domain protein kinase 1; serine/threoni | 99.07 | |
| 1fmk_A | 452 | C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros | 99.07 | |
| 2w1i_A | 326 | JAK2; chromosomal rearrangement, nucleotide-bindin | 99.07 | |
| 1t4h_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 99.07 | |
| 3lij_A | 494 | Calcium/calmodulin dependent protein kinase with A | 99.07 | |
| 1phk_A | 298 | Phosphorylase kinase; glycogen metabolism, transfe | 99.07 | |
| 2pvf_A | 334 | Fibroblast growth factor receptor 2; kinase domain | 99.07 | |
| 2h34_A | 309 | Serine/threonine-protein kinase PKNE; apoenzyme, t | 99.07 | |
| 3vhe_A | 359 | Vascular endothelial growth factor receptor 2; kin | 99.06 | |
| 3l9p_A | 367 | Anaplastic lymphoma kinase; kinase domain, ATP-bin | 99.06 | |
| 2h6d_A | 276 | 5'-AMP-activated protein kinase catalytic subunit | 99.06 | |
| 3h4j_B | 336 | AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin | 99.06 | |
| 2acx_A | 576 | G protein-coupled receptor kinase 6; GRK, G transf | 99.06 | |
| 2w5a_A | 279 | Serine/threonine-protein kinase NEK2; Ser/Thr prot | 99.06 | |
| 4e5w_A | 302 | Tyrosine-protein kinase JAK1; kinase domain, trans | 99.06 | |
| 3lxp_A | 318 | Non-receptor tyrosine-protein kinase TYK2; JAK3, i | 99.06 | |
| 1x8b_A | 289 | WEE1HU, WEE1-like protein kinase; cell cycle, tran | 99.06 | |
| 3hko_A | 345 | Calcium/calmodulin-dependent protein kinase with d | 99.06 | |
| 2eva_A | 307 | TAK1 kinase - TAB1 chimera fusion protein; transfe | 99.05 | |
| 3cok_A | 278 | Serine/threonine-protein kinase PLK4; POLO-like ki | 99.05 | |
| 3tt0_A | 382 | Basic fibroblast growth factor receptor 1; kinase | 99.05 | |
| 1t46_A | 313 | HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom | 99.05 | |
| 4ejn_A | 446 | RAC-alpha serine/threonine-protein kinase; AKT1, a | 99.05 | |
| 2qr7_A | 342 | Ribosomal protein S6 kinase alpha-3; kinase domain | 99.05 | |
| 3niz_A | 311 | Rhodanese family protein; structural genomics, str | 99.05 | |
| 2ozo_A | 613 | Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t | 99.04 | |
| 2i0e_A | 353 | Protein kinase C-beta II; serine/threonine protein | 99.04 | |
| 3mwu_A | 486 | Calmodulin-domain protein kinase 1; serine/threoni | 99.04 | |
| 3kfa_A | 288 | Tyrosine-protein kinase ABL1; CML, drug resistance | 99.04 | |
| 2h8h_A | 535 | Proto-oncogene tyrosine-protein kinase SRC; SRC ki | 99.04 | |
| 2vgo_A | 284 | Serine/threonine-protein kinase 12-A; nucleotide-b | 99.04 | |
| 3i6u_A | 419 | CDS1, serine/threonine-protein kinase CHK2; Ser/Th | 99.04 | |
| 2y7j_A | 365 | Phosphorylase B kinase gamma catalytic chain, test | 99.03 | |
| 3e7e_A | 365 | HBUB1, BUB1A, mitotic checkpoint serine/threonine- | 99.03 | |
| 3dtc_A | 271 | Mitogen-activated protein kinase kinase kinase 9; | 99.03 | |
| 2wqm_A | 310 | Serine/threonine-protein kinase NEK7; ATP-binding, | 99.03 | |
| 2wei_A | 287 | Calmodulin-domain protein kinase 1, putative; nucl | 99.03 | |
| 3o0g_A | 292 | Cell division protein kinase 5; kinase activator c | 99.03 | |
| 2yex_A | 276 | Serine/threonine-protein kinase CHK1; transferase, | 99.03 | |
| 4aaa_A | 331 | Cyclin-dependent kinase-like 2; transferase, phosp | 99.02 | |
| 1qpc_A | 279 | LCK kinase; alpha beta fold, transferase; HET: PTR | 99.02 | |
| 1mqb_A | 333 | Ephrin type-A receptor 2; tyrosine protein kinase, | 99.01 | |
| 1rjb_A | 344 | FL cytokine receptor; kinase, structure, autoinhib | 99.01 | |
| 1mp8_A | 281 | Focal adhesion kinase 1; tyrosine protein kinase, | 99.01 | |
| 2r5t_A | 373 | Serine/threonine-protein kinase SGK1; AGC protein | 99.01 | |
| 2eue_A | 275 | Carbon catabolite derepressing protein kinase; kin | 99.01 | |
| 3gbz_A | 329 | Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide- | 99.01 | |
| 1p4o_A | 322 | Insulin-like growth factor I receptor protein; IGF | 99.01 | |
| 2yfx_A | 327 | Tyrosine-protein kinase receptor; nucleotide-bindi | 99.01 | |
| 3pls_A | 298 | Macrophage-stimulating protein receptor; protein k | 99.0 | |
| 1xbb_A | 291 | Tyrosine-protein kinase SYK; gleevec, STI-571, ima | 99.0 | |
| 2zv2_A | 298 | Calcium/calmodulin-dependent protein kinase kinas; | 99.0 | |
| 1u59_A | 287 | Tyrosine-protein kinase ZAP-70; transferase; HET: | 99.0 | |
| 3poz_A | 327 | Epidermal growth factor receptor; kinase domain, a | 99.0 | |
| 3gxj_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 99.0 | |
| 1ob3_A | 288 | PFPK5, cell division control protein 2 homolog; tr | 99.0 | |
| 1u5q_A | 348 | Serine/threonine protein kinase TAO2; transferase; | 99.0 | |
| 2ycf_A | 322 | Serine/threonine-protein kinase CHK2; transferase, | 98.99 | |
| 3c4z_A | 543 | Rhodopsin kinase; Ser/Thr kinase, RGS homology dom | 98.99 | |
| 3qup_A | 323 | Tyrosine-protein kinase receptor TYRO3; protein ki | 98.99 | |
| 2pmi_A | 317 | Negative RE, cyclin-dependent protein kinase PHO85 | 98.98 | |
| 3f66_A | 298 | Hepatocyte growth factor receptor; C-Met, protein | 98.98 | |
| 3a7i_A | 303 | MST3 kinase, serine/threonine kinase 24 (STE20 hom | 98.98 | |
| 1fvr_A | 327 | Tyrosine-protein kinase TIE-2; tyrosine kinase, tr | 98.98 | |
| 3n9x_A | 432 | Phosphotransferase; malaria kinase, structural gen | 98.98 | |
| 3dls_A | 335 | PAS domain-containing serine/threonine-protein KI; | 98.97 | |
| 3dbq_A | 343 | Dual specificity protein kinase TTK; MPS1 structur | 98.97 | |
| 2pml_X | 348 | PFPK7, Ser/Thr protein kinase; phosphorylati trans | 98.97 | |
| 1zy4_A | 303 | Serine/threonine-protein kinase GCN2; translation | 98.97 | |
| 3com_A | 314 | Serine/threonine-protein kinase 4; MST1, STE20-lik | 98.96 | |
| 4f0f_A | 287 | Serine/threonine-protein kinase ROCO4; LRRK2, ATP- | 98.96 | |
| 2xir_A | 316 | Vascular endothelial growth factor receptor 2; ang | 98.96 | |
| 1vzo_A | 355 | Ribosomal protein S6 kinase alpha 5; protein kinas | 98.96 | |
| 2vwi_A | 303 | Serine/threonine-protein kinase OSR1; STE kinase, | 98.96 | |
| 2i1m_A | 333 | Macrophage colony-stimulating factor 1 receptor; k | 98.96 | |
| 3q4u_A | 301 | Activin receptor type-1; structural genomics conso | 98.95 | |
| 2a19_B | 284 | Interferon-induced, double-stranded RNA-activated | 98.95 | |
| 3c1x_A | 373 | Hepatocyte growth factor receptor; receptor tyrosi | 98.95 | |
| 3cc6_A | 281 | Protein tyrosine kinase 2 beta; focal adhesion kin | 98.94 | |
| 3rp9_A | 458 | Mitogen-activated protein kinase; structural genom | 98.94 | |
| 3brb_A | 313 | Proto-oncogene tyrosine-protein kinase MER; ATP-bi | 98.94 | |
| 2zmd_A | 390 | Dual specificity protein kinase TTK; MPS1, T686A, | 98.94 | |
| 3p1a_A | 311 | MYT1 kinase, membrane-associated tyrosine- and thr | 98.93 | |
| 1byg_A | 278 | CSK, protein (C-terminal SRC kinase); protein kina | 98.92 | |
| 2wtk_C | 305 | Serine/threonine-protein kinase 11; transferase-me | 98.92 | |
| 2i6l_A | 320 | Mitogen-activated protein kinase 6; MAPK6, ERK3, e | 98.91 | |
| 1nxk_A | 400 | MAP kinase-activated protein kinase 2; MK2, phosph | 98.91 | |
| 2izr_A | 330 | Casein kinase I isoform gamma-3; serine/threonine- | 98.91 | |
| 3rgf_A | 405 | Cyclin-dependent kinase 8; protein kinase complex, | 98.9 | |
| 3kex_A | 325 | Receptor tyrosine-protein kinase ERBB-3; kinase do | 98.89 | |
| 1b6c_B | 342 | TGF-B superfamily receptor type I; complex (isomer | 98.89 | |
| 3m2w_A | 299 | MAP kinase-activated protein kinase 2; small molec | 98.89 | |
| 2x7f_A | 326 | TRAF2 and NCK-interacting protein kinase; serine/t | 98.89 | |
| 3lm5_A | 327 | Serine/threonine-protein kinase 17B; STK17B, serin | 98.89 | |
| 2r3i_A | 299 | Cell division protein kinase 2; serine/threonine-p | 98.88 | |
| 3mtl_A | 324 | Cell division protein kinase 16; pctaire1, indirub | 98.88 | |
| 1cm8_A | 367 | Phosphorylated MAP kinase P38-gamma; phosphorylati | 98.88 | |
| 3ll6_A | 337 | Cyclin G-associated kinase; transferase, protein k | 98.87 | |
| 3pg1_A | 362 | Mitogen-activated protein kinase, putative (MAP K | 98.87 | |
| 3an0_A | 340 | Dual specificity mitogen-activated protein kinase; | 98.87 | |
| 3lb7_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 98.87 | |
| 2j0j_A | 656 | Focal adhesion kinase 1; cell migration, FERM, tra | 98.86 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 98.86 | |
| 3nsz_A | 330 | CK II alpha, casein kinase II subunit alpha; inhib | 98.86 | |
| 3og7_A | 289 | AKAP9-BRAF fusion protein; proto-oncogene, V600E, | 98.85 | |
| 3llt_A | 360 | Serine/threonine kinase-1, pflammer; lammer kinase | 98.85 | |
| 3oz6_A | 388 | Mitogen-activated protein kinase 1, serine/threon | 98.85 | |
| 1ua2_A | 346 | CAK, cell division protein kinase 7; cell cycle, p | 98.85 | |
| 3byv_A | 377 | Rhoptry kinase; malaria, transferase, structural g | 98.84 | |
| 3mdy_A | 337 | Bone morphogenetic protein receptor type-1B; compl | 98.84 | |
| 3cek_A | 313 | Dual specificity protein kinase TTK; HMPS1, PYT, E | 98.84 | |
| 3fme_A | 290 | Dual specificity mitogen-activated protein kinase; | 98.84 | |
| 2iwi_A | 312 | Serine/threonine-protein kinase PIM-2; nucleotide- | 98.84 | |
| 3lzb_A | 327 | Epidermal growth factor receptor; epidermal growth | 98.83 | |
| 2b9h_A | 353 | MAP kinase FUS3, mitogen-activated protein kinase | 98.82 | |
| 3aln_A | 327 | Dual specificity mitogen-activated protein kinase; | 98.82 | |
| 3qyz_A | 364 | Mitogen-activated protein kinase 1; transferase, s | 98.81 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.81 | |
| 3ttj_A | 464 | Mitogen-activated protein kinase 10; JNK3, protein | 98.8 | |
| 2vuw_A | 336 | Serine/threonine-protein kinase haspin; cell cycle | 98.8 | |
| 1u46_A | 291 | ACK-1, activated CDC42 kinase 1; tyrosine kinase, | 98.8 | |
| 3qa8_A | 676 | MGC80376 protein; kinase ubiquitin-like domain, ph | 98.79 | |
| 2xrw_A | 371 | Mitogen-activated protein kinase 8; transcription, | 98.79 | |
| 2jii_A | 352 | Serine/threonine-protein kinase VRK3 molecule: VA | 98.78 | |
| 2rio_A | 434 | Serine/threonine-protein kinase/endoribonuclease I | 98.78 | |
| 1csn_A | 298 | Casein kinase-1; phosphotransferase; HET: ATP; 2.0 | 98.77 | |
| 2fst_X | 367 | Mitogen-activated protein kinase 14; active mutant | 98.77 | |
| 3g33_A | 308 | Cell division protein kinase 4; Ser/Thr protein ki | 98.77 | |
| 3eb0_A | 383 | Putative uncharacterized protein; kinase cryptospo | 98.77 | |
| 2v62_A | 345 | Serine/threonine-protein kinase VRK2; transferase, | 98.76 | |
| 3fhr_A | 336 | MAP kinase-activated protein kinase 3; kinase-inhi | 98.76 | |
| 3op5_A | 364 | Serine/threonine-protein kinase VRK1; adenosine tr | 98.76 | |
| 3mi9_A | 351 | Cell division protein kinase 9; P-TEFB, HIV-1, pro | 98.76 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.76 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.75 | |
| 2y4i_B | 319 | KSR2, HKSR2, kinase suppressor of RAS 2; transfera | 98.75 | |
| 4exu_A | 371 | Mitogen-activated protein kinase 13; P38 kinase, t | 98.74 | |
| 3g2f_A | 336 | Bone morphogenetic protein receptor type-2; kinase | 98.73 | |
| 1blx_A | 326 | Cyclin-dependent kinase 6; inhibitor protein, cycl | 98.72 | |
| 3p23_A | 432 | Serine/threonine-protein kinase/endoribonuclease; | 98.69 | |
| 3coi_A | 353 | Mitogen-activated protein kinase 13; P38D, P38delt | 98.69 | |
| 3kvw_A | 429 | DYRK2, dual specificity tyrosine-phosphorylation-r | 98.67 | |
| 1j1b_A | 420 | Glycogen synthase kinase-3 beta; complex, TAU, AMP | 98.67 | |
| 3uzp_A | 296 | CKI-delta, CKID, casein kinase I isoform delta; CK | 98.66 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.65 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.65 | |
| 3en9_A | 540 | Glycoprotease, O-sialoglycoprotein endopeptidase/p | 98.64 | |
| 3a99_A | 320 | Proto-oncogene serine/threonine-protein kinase PI; | 98.64 | |
| 3q60_A | 371 | ROP5B; pseudokinase, transferase; HET: ATP; 1.72A | 98.64 | |
| 1z57_A | 339 | Dual specificity protein kinase CLK1; protein tyro | 98.63 | |
| 1wak_A | 397 | Serine/threonine-protein kinase SPRK1; SRPK, trans | 98.63 | |
| 3e3p_A | 360 | Protein kinase, putative glycogen synthase kinase; | 98.63 | |
| 2dyl_A | 318 | Dual specificity mitogen-activated protein kinase | 98.62 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.59 | |
| 4hgt_A | 296 | Casein kinase I isoform delta; CK1D, inhibitor, tr | 98.59 | |
| 3sv0_A | 483 | Casein kinase I-like; typical kinase domain fold, | 98.57 | |
| 2vx3_A | 382 | Dual specificity tyrosine-phosphorylation- regula | 98.52 | |
| 1q8y_A | 373 | SR protein kinase; transferase; HET: ADP ADE; 2.05 | 98.52 | |
| 4e7w_A | 394 | Glycogen synthase kinase 3; GSK3, PTyr195, transfe | 98.51 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.49 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.44 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.44 | |
| 2eu9_A | 355 | Dual specificity protein kinase CLK3; kinase domai | 98.44 | |
| 1zar_A | 282 | RIO2 kinase; serine kinase, winged-helix, RIO doma | 98.44 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.26 | |
| 1zth_A | 258 | RIO1 serine protein kinase; ribosome biogenesis, r | 97.9 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.76 | |
| 3dzo_A | 413 | Rhoptry kinase domain; parasitic disease, transfer | 97.67 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.64 | |
| 4gyi_A | 397 | RIO2 kinase; protein kinase, ADP complex, phosphoa | 97.6 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.18 | |
| 3d1u_A | 288 | Putative fructosamine-3-kinase; YP_290396.1, struc | 97.02 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.8 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.54 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.52 | |
| 3tm0_A | 263 | Aminoglycoside 3'-phosphotransferase; protein kina | 96.47 | |
| 1nd4_A | 264 | Aminoglycoside 3'-phosphotransferase; protein kina | 96.03 | |
| 3f7w_A | 288 | Putative fructosamine-3-kinase; YP_290396.1, struc | 93.41 | |
| 3dxp_A | 359 | Putative acyl-COA dehydrogenase; protein kinase-li | 92.01 | |
| 2olc_A | 397 | MTR kinase, methylthioribose kinase; kinase ADP-2H | 89.03 | |
| 3jr1_A | 312 | Putative fructosamine-3-kinase; YP_719053.1, struc | 87.53 | |
| 4gkh_A | 272 | Aminoglycoside 3'-phosphotransferase APHA1-IAB; py | 87.32 | |
| 3r70_A | 320 | Aminoglycoside phosphotransferase; structural geno | 81.84 | |
| 3ovc_A | 362 | Hygromycin-B 4-O-kinase; aminoglycoside phosphotra | 80.4 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-64 Score=603.10 Aligned_cols=520 Identities=29% Similarity=0.422 Sum_probs=347.8
Q ss_pred hcCCCHHHHHHHHHhhhcCCCCCCcccccCccccCCCCCCCCCCCCccccCCCcEEEEEeCCCCCccc---cCc------
Q 003307 13 VNALGQSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITCTNGYVTSIMLNDMGLVGN---FSF------ 83 (832)
Q Consensus 13 ~~~~~~~~~~~l~~~k~~~~~~~~~~~l~~w~~~~~~~~~c~~~w~gv~C~~~~v~~l~l~~~~l~g~---~~~------ 83 (832)
.+++.++|++||++||+++. ||. ++++|+.+ .+|| .|.||+|+.++|++|+|++.++.|. +++
T Consensus 6 ~~~~~~~~~~all~~k~~~~-~~~--~l~~W~~~---~~~C--~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~ 77 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLP-DKN--LLPDWSSN---KNPC--TFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLT 77 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCS-CTT--SSTTCCTT---SCGG--GSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCT
T ss_pred cccCCHHHHHHHHHHHhhCC-Ccc--cccCCCCC---CCCc--CCcceEECCCcEEEEECCCCCcCCccCccChhHhccC
Confidence 34456789999999999994 776 48999742 4666 9999999989999999999999886 421
Q ss_pred ----------------ccccCCCCCCEEEcCCCCCcccCC---CCCCCCCCCEEECCCCCCCccCccc------------
Q 003307 84 ----------------PTIIGLKMLCNVSVSNNQLMGNIT---DIGSIQSLEFLDLSHNLFHGLIPSG------------ 132 (832)
Q Consensus 84 ----------------~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~l~~L~~L~Ls~N~l~~~~p~~------------ 132 (832)
..++++++|++|||++|.++|.+| .++.+++|++|+|++|.+++.+|..
T Consensus 78 ~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 157 (768)
T 3rgz_A 78 GLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157 (768)
T ss_dssp TCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEE
T ss_pred cccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEE
Confidence 355666777777777777765443 3555555555555555544443332
Q ss_pred ----------------c----------------------cCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCC
Q 003307 133 ----------------I----------------------VSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFG 174 (832)
Q Consensus 133 ----------------~----------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 174 (832)
+ ..+++|++|+|++|.+++.+|. |+++++|++|+|++|+++
T Consensus 158 Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~ 236 (768)
T 3rgz_A 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 236 (768)
T ss_dssp CCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC
T ss_pred CCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC
Confidence 2 2344555555555555555555 777788888888888888
Q ss_pred CccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCC----------------------
Q 003307 175 GDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHD---------------------- 232 (832)
Q Consensus 175 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---------------------- 232 (832)
+.+|..+.++++|++|+|++|.+++.+|.. .+++|++|++++|.+++.+|...
T Consensus 237 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-----~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p 311 (768)
T 3rgz_A 237 GDFSRAISTCTELKLLNISSNQFVGPIPPL-----PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311 (768)
T ss_dssp SCHHHHTTTCSSCCEEECCSSCCEESCCCC-----CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC
T ss_pred CcccHHHhcCCCCCEEECCCCcccCccCcc-----ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc
Confidence 788888888888888888888777655542 23445555555555544444330
Q ss_pred -CCCCCCCcCEEEccCCcccccCC--CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCC---------
Q 003307 233 -GMPYFDNLEVFDASNNHLVGAIP--SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLE--------- 300 (832)
Q Consensus 233 -~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~--------- 300 (832)
.+..+++|+.|++++|.+++.+| .+..+++|++|++++|++++.+|..+... ..+|+.|++++|+++
T Consensus 312 ~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~~L~~L~Ls~N~l~~~~~~~~~~ 390 (768)
T 3rgz_A 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL-SASLLTLDLSSNNFSGPILPNLCQ 390 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHH-TTTCSEEECCSSEEEEECCTTTTC
T ss_pred hHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhh-hcCCcEEEccCCCcCCCcChhhhh
Confidence 04444455555555555544444 24455555555555555554555444211 013333333333333
Q ss_pred -----------------CccCc--cCCCCCCEEEecCCeecccCCCCC---CCCCEEecCCCCCcCcchhhccccCcccE
Q 003307 301 -----------------GPVGS--ITSATLKKVNLSSNKLSGSLPARV---GHCTIVDLSNNRLSGDLSRMQNWGNYVED 358 (832)
Q Consensus 301 -----------------~~~~~--~~~~~L~~L~L~~N~l~~~~p~~l---~~l~~L~L~~N~l~~~~~~~~~~~~~L~~ 358 (832)
+.+|. ....+|++|++++|++++.+|..+ .+|+.|++++|++++.++..+...++|+.
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 22221 112356666666666666655433 35567777777777766666666677888
Q ss_pred EEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcc
Q 003307 359 IHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNF 438 (832)
Q Consensus 359 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 438 (832)
|+|++|.+++.+|..+..+++|++|+|++|++++.+|..++.+++|++|++++|++++.+|..+..+++|+.|+|++|++
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 88888888888888888888888888888888888888888888999999999999888888888899999999999999
Q ss_pred cccCCcccccCCCC------------------------------------------------------------------
Q 003307 439 SGPLPLQEIQNNPS------------------------------------------------------------------ 452 (832)
Q Consensus 439 ~~~~p~~~~~~~~~------------------------------------------------------------------ 452 (832)
+|.+|..+......
T Consensus 551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~ 630 (768)
T 3rgz_A 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630 (768)
T ss_dssp ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence 88888655332110
Q ss_pred -------CcccCc------------ccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCcc--CCCcEEE
Q 003307 453 -------TGSTQN------------LSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLP--NGLKEFN 511 (832)
Q Consensus 453 -------~~~~~~------------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~--~~L~~l~ 511 (832)
.++.|. ..|+.|||++|+++|.+|..++++++|+.|||++|+++|.+|..+. ..|++||
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 011111 1267777777777777777777788888888888888888877766 5788888
Q ss_pred cCCCccccccCcc--CCCCCCCCCCCCCCCCCCCCCCCC
Q 003307 512 VSFNNLSGVVPEN--LRNFPDSAFHPGNSLLTFPNSPSQ 548 (832)
Q Consensus 512 ls~N~l~g~~p~~--~~~~~~~~~~~~n~~~~~~~~~~~ 548 (832)
+++|+++|.+|.. |.+++..+|. ||+.+|+++.+.|
T Consensus 711 ls~N~l~g~iP~~~~~~~~~~~~~~-gN~~Lcg~~l~~C 748 (768)
T 3rgz_A 711 LSNNNLSGPIPEMGQFETFPPAKFL-NNPGLCGYPLPRC 748 (768)
T ss_dssp CCSSEEEEECCSSSSGGGSCGGGGC-SCTEEESTTSCCC
T ss_pred CcCCcccccCCCchhhccCCHHHhc-CCchhcCCCCcCC
Confidence 8888888888865 6677777775 9999998654433
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-53 Score=505.13 Aligned_cols=465 Identities=20% Similarity=0.239 Sum_probs=346.6
Q ss_pred CCCHHHHHHHHHhhhcCCCCCCcccccCccccC--CCCCCCCCCC------------CccccC-CCcEEEEEeCCCCCcc
Q 003307 15 ALGQSDFEALLQLKKGIAKDPSGQIIDSWDTKS--LSSDGCPRNW------------FGITCT-NGYVTSIMLNDMGLVG 79 (832)
Q Consensus 15 ~~~~~~~~~l~~~k~~~~~~~~~~~l~~w~~~~--~~~~~c~~~w------------~gv~C~-~~~v~~l~l~~~~l~g 79 (832)
+...+|+.||++||+++ .+| +|+.+. +..++|.|.| .||.|+ .++|++|+|+++++.|
T Consensus 265 ~~~~~d~~ALl~~k~~l-~~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G 337 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEAL-DGK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKG 337 (876)
T ss_dssp CHHHHHHHHHHHHHHHT-TGG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEE
T ss_pred ccchHHHHHHHHHHHHc-CCC------CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCC
Confidence 34467999999999998 343 686542 1235655799 999998 6899999999999999
Q ss_pred ccCcccccCCCCCCEEEc-CCCCCcccCC-CC------------------------------------------------
Q 003307 80 NFSFPTIIGLKMLCNVSV-SNNQLMGNIT-DI------------------------------------------------ 109 (832)
Q Consensus 80 ~~~~~~~~~l~~L~~L~L-s~n~l~~~~~-~~------------------------------------------------ 109 (832)
.+ ++.+++|++|+.||| ++|.++|..+ ..
T Consensus 338 ~i-p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 338 RV-PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EE-CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred cC-chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 99 479999999999999 8898877633 21
Q ss_pred ---CCCCCCCEEECCC--CCCCccCcccccCCCCCCEEEcccccccc-----------------cCCCCCC--CCCCCCE
Q 003307 110 ---GSIQSLEFLDLSH--NLFHGLIPSGIVSLKNLMLLNISSNSFEG-----------------TFPSGFG--GLGKLKY 165 (832)
Q Consensus 110 ---~~l~~L~~L~Ls~--N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-----------------~~p~~~~--~l~~L~~ 165 (832)
.....++.+.+.. |++++ +|..|+++++|++|+|++|+|++ .+|..++ ++++|++
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~ 495 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred cccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence 1122344444444 88988 79999999999999999999998 3899988 9999999
Q ss_pred eeCcCCCCCCccchhhhcCCCCCEEECccCc-Ccc-ccCCCCC----CCCCCCCccEEECCCCCCeeccCC--CCCCCCC
Q 003307 166 LDLRANRFGGDIMHLLSQLGSVVHVDLSNNQ-FSG-SLDLGLG----DSSFISSIQYLNISENSLVGELFP--HDGMPYF 237 (832)
Q Consensus 166 L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~-l~~-~~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~--~~~~~~l 237 (832)
|+|++|++.+.+|..|+++++|++|+|++|+ ++| .+|..++ .+..+++|+.|+|++|.++ .+|. . +..+
T Consensus 496 L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~--l~~L 572 (876)
T 4ecn_A 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS--LQKM 572 (876)
T ss_dssp EEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH--HTTC
T ss_pred EECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh--hhcC
Confidence 9999999999999999999999999999998 998 7876654 3346679999999999998 7776 5 8899
Q ss_pred CCcCEEEccCCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCC-CCEEECCCCCCCCccCccCC---CCCCE
Q 003307 238 DNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMM-LSELDLSLNQLEGPVGSITS---ATLKK 313 (832)
Q Consensus 238 ~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~-L~~L~L~~N~l~~~~~~~~~---~~L~~ 313 (832)
++|+.|++++|.++ .+|.+..+++|+.|+|++|+++ .+|..+ ..+++ |+.|+|++|.++........ .+|+.
T Consensus 573 ~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l--~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~ 648 (876)
T 4ecn_A 573 VKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDF--CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648 (876)
T ss_dssp TTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTS--CEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEE
T ss_pred CCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHHH--hhccccCCEEECcCCCCCcCchhhhccccCCCCE
Confidence 99999999999999 7778999999999999999999 888877 56677 99999999999843322222 24888
Q ss_pred EEecCCeecccCCCCC--------CCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCC-------C
Q 003307 314 VNLSSNKLSGSLPARV--------GHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQF-------L 378 (832)
Q Consensus 314 L~L~~N~l~~~~p~~l--------~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l-------~ 378 (832)
|++++|++++.+|... .+|+.|+|++|+++..+..++...++|+.|+|++|.|+.+.+..+... +
T Consensus 649 L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~ 728 (876)
T 4ecn_A 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY 728 (876)
T ss_dssp EECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGG
T ss_pred EECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccC
Confidence 8999988887665321 144455555555554444444334445555555555552222222111 1
Q ss_pred CCCEEEccCCcCCCCcccccC--CCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCccc
Q 003307 379 RLTSFKVSNNSLEGDLPAVLG--TYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGST 456 (832)
Q Consensus 379 ~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~ 456 (832)
+|+.|+|++|+|+ .+|..+. .+++|+.|+|++|+|++ +|..+..+++|+.|+|++|+
T Consensus 729 ~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------------------- 787 (876)
T 4ecn_A 729 LLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------------------- 787 (876)
T ss_dssp GCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-------------------
T ss_pred CccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC-------------------
Confidence 4555555555555 4444444 55555555555555554 34445555555555555542
Q ss_pred CcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCccCCCcEEEcCCCccccccCccC
Q 003307 457 QNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENL 525 (832)
Q Consensus 457 ~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~L~~l~ls~N~l~g~~p~~~ 525 (832)
++++|++.+.+|..+.++++|+.|+|++|++ +.+|..+.++|+.|++++|++....+..+
T Consensus 788 --------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 788 --------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPNISIDVTSV 847 (876)
T ss_dssp --------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTTCEEECGGG
T ss_pred --------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCCCccChHHc
Confidence 2345888999999999999999999999999 78999888899999999999876655443
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=484.88 Aligned_cols=464 Identities=20% Similarity=0.240 Sum_probs=328.8
Q ss_pred CCCHHHHHHHHHhhhcCCCCCCcc-------cccCccccCCCCCCCCCCC---CccccC-CCcEEEEEeCCCCCccccCc
Q 003307 15 ALGQSDFEALLQLKKGIAKDPSGQ-------IIDSWDTKSLSSDGCPRNW---FGITCT-NGYVTSIMLNDMGLVGNFSF 83 (832)
Q Consensus 15 ~~~~~~~~~l~~~k~~~~~~~~~~-------~l~~w~~~~~~~~~c~~~w---~gv~C~-~~~v~~l~l~~~~l~g~~~~ 83 (832)
++...|+.||.++++++. ++.-. ...+|..+ .++| .| .||+|+ .++|++|+|+++++.|.++
T Consensus 26 ~~~~~d~~aL~~~~~~~~-~~~w~~~~~~~~~~~~W~~~---~~~c--~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp- 98 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALN-GKNWSQQGFGTQPGANWNFN---KELD--MWGAQPGVSLNSNGRVTGLSLEGFGASGRVP- 98 (636)
T ss_dssp CHHHHHHHHHHHHHHHTT-GGGCCCCC------CCCCCS---SCGG--GTTCCTTEEECTTCCEEEEECTTSCCEEEEC-
T ss_pred hhHHHHHHHHHHHHHHcC-CCCcccCCcCCccCCCCCCC---CCcc--cccCCCCeEEcCCCCEEEEEecCcccCCcCC-
Confidence 344579999999999873 22100 12367642 4555 99 999997 5799999999999999994
Q ss_pred ccccCCCCCCEEEcCCCCCcccC---------------------------------C-CCC-------------------
Q 003307 84 PTIIGLKMLCNVSVSNNQLMGNI---------------------------------T-DIG------------------- 110 (832)
Q Consensus 84 ~~~~~l~~L~~L~Ls~n~l~~~~---------------------------------~-~~~------------------- 110 (832)
+.+++|++|++|||++|.+.... + .+.
T Consensus 99 ~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 178 (636)
T 4eco_A 99 DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178 (636)
T ss_dssp GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCC
T ss_pred hHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccc
Confidence 79999999999999999762111 1 111
Q ss_pred CCCCCCEEECC--CCCCCccCcccccCCCCCCEEEccccccccc-----------------CCCCCC--CCCCCCEeeCc
Q 003307 111 SIQSLEFLDLS--HNLFHGLIPSGIVSLKNLMLLNISSNSFEGT-----------------FPSGFG--GLGKLKYLDLR 169 (832)
Q Consensus 111 ~l~~L~~L~Ls--~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-----------------~p~~~~--~l~~L~~L~L~ 169 (832)
....++.+.+. .|++++ +|..|+++++|++|+|++|.+++. +|..++ ++++|++|+|+
T Consensus 179 ~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~ 257 (636)
T 4eco_A 179 SRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257 (636)
T ss_dssp CCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred cccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEec
Confidence 11122222222 578888 788899999999999999999985 888888 99999999999
Q ss_pred CCCCCCccchhhhcCCCCCEEECccCc-Ccc-ccCCCCCCC---CCCCCccEEECCCCCCeeccCC--CCCCCCCCCcCE
Q 003307 170 ANRFGGDIMHLLSQLGSVVHVDLSNNQ-FSG-SLDLGLGDS---SFISSIQYLNISENSLVGELFP--HDGMPYFDNLEV 242 (832)
Q Consensus 170 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~-l~~-~~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~--~~~~~~l~~L~~ 242 (832)
+|++.+.+|..++++++|++|+|++|+ ++| .+|..++.+ ..+++|++|++++|+++ .+|. . +..+++|+.
T Consensus 258 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~--l~~l~~L~~ 334 (636)
T 4eco_A 258 NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS--LQKMKKLGM 334 (636)
T ss_dssp CCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH--HTTCTTCCE
T ss_pred CCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh--hccCCCCCE
Confidence 999999999999999999999999998 888 777766542 33478999999999998 6766 4 888899999
Q ss_pred EEccCCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCC-CCEEECCCCCCCCccCccCC---CCCCEEEecC
Q 003307 243 FDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMM-LSELDLSLNQLEGPVGSITS---ATLKKVNLSS 318 (832)
Q Consensus 243 L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~-L~~L~L~~N~l~~~~~~~~~---~~L~~L~L~~ 318 (832)
|++++|.++|.+|.+..+++|++|++++|+++ .+|..+ ..+++ |++|++++|.++........ .+|+.|++++
T Consensus 335 L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l--~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 335 LECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANF--CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp EECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTS--EEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCS
T ss_pred EeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhh--hhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcC
Confidence 99999999988888888899999999999998 788776 56777 99999999998843332222 2688899999
Q ss_pred CeecccCCCCCC----------CCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCC-------CCC
Q 003307 319 NKLSGSLPARVG----------HCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFL-------RLT 381 (832)
Q Consensus 319 N~l~~~~p~~l~----------~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~-------~L~ 381 (832)
|++++.+|..+. +|+.|++++|+++.....++...++|+.|+|++|.++.+.+..+.... +|+
T Consensus 412 N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~ 491 (636)
T 4eco_A 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491 (636)
T ss_dssp SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCC
T ss_pred CcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCcc
Confidence 999888887665 344444444444443333333333444444444444422222222111 444
Q ss_pred EEEccCCcCCCCcccccC--CCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcc
Q 003307 382 SFKVSNNSLEGDLPAVLG--TYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNL 459 (832)
Q Consensus 382 ~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~ 459 (832)
+|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++|+
T Consensus 492 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~---------------------- 547 (636)
T 4eco_A 492 SIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR---------------------- 547 (636)
T ss_dssp EEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB----------------------
T ss_pred EEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc----------------------
Confidence 4444444444 3344333 44444444444444444 34444444444444444442
Q ss_pred cccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCccCCCcEEEcCCCccccccC
Q 003307 460 SLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVP 522 (832)
Q Consensus 460 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~L~~l~ls~N~l~g~~p 522 (832)
++++|++.+.+|..+.++++|+.|+|++|++ +.+|..+.++|+.|++++|++...-+
T Consensus 548 -----~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 548 -----DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNPNISIDL 604 (636)
T ss_dssp -----CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCTTCEEEC
T ss_pred -----ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCCCccccH
Confidence 2267888999999999999999999999999 68998888899999999998875443
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=496.26 Aligned_cols=439 Identities=29% Similarity=0.419 Sum_probs=329.1
Q ss_pred cEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCc-----------------
Q 003307 66 YVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHG----------------- 127 (832)
Q Consensus 66 ~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~----------------- 127 (832)
.++.++++++.+.+.++ .+.++++|++|+|++|.+++.+| .++.+++|++|+|++|.+++
T Consensus 201 ~L~~L~Ls~n~l~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~ 278 (768)
T 3rgz_A 201 NLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAE 278 (768)
T ss_dssp TCCEEECCSSCCCSCCC--BCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCS
T ss_pred cCCEEECcCCcCCCCCc--ccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcC
Confidence 45566666666665542 25556666666666666655555 55555555555555555554
Q ss_pred -----cCcccccCC-CCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchh-hhcCCCCCEEECccCcCccc
Q 003307 128 -----LIPSGIVSL-KNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHL-LSQLGSVVHVDLSNNQFSGS 200 (832)
Q Consensus 128 -----~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~-l~~l~~L~~L~Ls~N~l~~~ 200 (832)
.+|..+..+ ++|++|+|++|.+++.+|..|+++++|++|+|++|++++.+|.. +.++++|++|+|++|.+++.
T Consensus 279 n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~ 358 (768)
T 3rgz_A 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358 (768)
T ss_dssp SEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEEC
T ss_pred CccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcc
Confidence 444444443 55555555555555555555555555555555555555444433 55555555555555555555
Q ss_pred cCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCCCCCCh
Q 003307 201 LDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPV 279 (832)
Q Consensus 201 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~ 279 (832)
+|..+..+. ++|+.|++++|.+++.+++......+++|+.|++++|.+++.+| .+..+++|++|++++|++++.+|.
T Consensus 359 ~p~~l~~l~--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 436 (768)
T 3rgz_A 359 LPESLTNLS--ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436 (768)
T ss_dssp CCTTHHHHT--TTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred ccHHHHhhh--cCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccH
Confidence 554443321 26777777777777777766222237789999999999988888 788899999999999999988898
Q ss_pred hhhhhCCCCCCEEECCCCCCCCccCcc--CCCCCCEEEecCCeecccCCCCC---CCCCEEecCCCCCcCcchhhccccC
Q 003307 280 ALLQESSMMLSELDLSLNQLEGPVGSI--TSATLKKVNLSSNKLSGSLPARV---GHCTIVDLSNNRLSGDLSRMQNWGN 354 (832)
Q Consensus 280 ~~~~~~~~~L~~L~L~~N~l~~~~~~~--~~~~L~~L~L~~N~l~~~~p~~l---~~l~~L~L~~N~l~~~~~~~~~~~~ 354 (832)
.+ ..+++|+.|++++|.+++.+|.. ...+|++|++++|++++.+|..+ .+|+.|++++|++++.++..+...+
T Consensus 437 ~l--~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 437 SL--GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp GG--GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred HH--hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence 87 67889999999999999877743 35689999999999999888755 5678999999999998888777778
Q ss_pred cccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccc------------------------------------
Q 003307 355 YVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVL------------------------------------ 398 (832)
Q Consensus 355 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~------------------------------------ 398 (832)
+|+.|+|++|.+++.+|..+..+++|++|++++|+++|.+|..+
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999999988777543
Q ss_pred ----------------------------------CCCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcccccCCc
Q 003307 399 ----------------------------------GTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPL 444 (832)
Q Consensus 399 ----------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 444 (832)
..+++|++|||++|+++|.+|..|+.++.|+.|+|++|+++|.+|.
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 674 (768)
T 3rgz_A 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674 (768)
T ss_dssp ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh
Confidence 3356799999999999999999999999999999999999999998
Q ss_pred ccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCcc-CCCcEEEcCCCc-ccc
Q 003307 445 QEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLP-NGLKEFNVSFNN-LSG 519 (832)
Q Consensus 445 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~~L~~l~ls~N~-l~g 519 (832)
.+..... |++|||++|+++|.+|..++++++|++|||++|+|+|.||.... ..+....+.+|. +.|
T Consensus 675 ~l~~L~~---------L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 675 EVGDLRG---------LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp GGGGCTT---------CCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEES
T ss_pred HHhCCCC---------CCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcC
Confidence 8877654 99999999999999999999999999999999999999997643 344445566664 444
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-48 Score=459.88 Aligned_cols=457 Identities=18% Similarity=0.131 Sum_probs=388.8
Q ss_pred CcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEE
Q 003307 65 GYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLN 143 (832)
Q Consensus 65 ~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 143 (832)
..++.|+++++.+.+.. +..+.++++|++|+|++|.+.+..| .|+++++|++|+|++|.+++..|..|+++++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEEC-TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCcCC-hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 46899999999998754 5789999999999999999999888 899999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCcc--EEECCC
Q 003307 144 ISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQ--YLNISE 221 (832)
Q Consensus 144 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~--~L~L~~ 221 (832)
|++|.+++..|..|+++++|++|+|++|++++.....+..+++|++|++++|.+++..+..++.+ ++|+ .|++++
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~l~L~l~~ 188 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL---QQATNLSLNLNG 188 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTT---TTCCSEEEECTT
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhh---cccceeEEecCC
Confidence 99999998878899999999999999999998665556669999999999999997666555544 5666 799999
Q ss_pred CCCeeccCCCCCCCCC---------------------------------------------------CCcCEEEccCCcc
Q 003307 222 NSLVGELFPHDGMPYF---------------------------------------------------DNLEVFDASNNHL 250 (832)
Q Consensus 222 N~l~~~~~~~~~~~~l---------------------------------------------------~~L~~L~Ls~N~l 250 (832)
|.+++..+.. +... .+|+.|++++|.+
T Consensus 189 n~l~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l 266 (606)
T 3t6q_A 189 NDIAGIEPGA--FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266 (606)
T ss_dssp CCCCEECTTT--TTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred CccCccChhH--hhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence 9998765543 2210 1688899999999
Q ss_pred cccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccC--ccCCCCCCEEEecCCeecccCCC
Q 003307 251 VGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVG--SITSATLKKVNLSSNKLSGSLPA 327 (832)
Q Consensus 251 ~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~--~~~~~~L~~L~L~~N~l~~~~p~ 327 (832)
++..+ .+..+++|++|++++|+++ .+|..+ ..+++|++|++++|.+++..+ ....++|++|++++|.+.+.+|.
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 343 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTATHLS-ELPSGL--VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC--CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS
T ss_pred CccCHHHhccccCCCEEeccCCccC-CCChhh--cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch
Confidence 98777 6899999999999999998 788877 678899999999999998755 33457999999999999877765
Q ss_pred ----CCCCCCEEecCCCCCcCcc--hhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCccc-ccCC
Q 003307 328 ----RVGHCTIVDLSNNRLSGDL--SRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPA-VLGT 400 (832)
Q Consensus 328 ----~l~~l~~L~L~~N~l~~~~--~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~ 400 (832)
.+.+|+.|++++|.+++.. +..+...++|++|++++|.+++..|..+..+++|++|++++|++++..+. .+..
T Consensus 344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423 (606)
T ss_dssp STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhC
Confidence 3567889999999998876 55566667899999999999999999999999999999999999987665 4899
Q ss_pred CCCCCEEEccCCcccccCcccccCCCCCCeEeccCCccccc-CC--cccccCCCCCcccCcccccEEEccCCcCcccCCh
Q 003307 401 YPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGP-LP--LQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLP 477 (832)
Q Consensus 401 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p--~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~ 477 (832)
+++|++|++++|.+++..+..+..+++|++|+|++|++++. +| ..+... .+|++|+|++|++++..|.
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l---------~~L~~L~Ls~n~l~~~~~~ 494 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL---------GRLEILVLSFCDLSSIDQH 494 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC---------TTCCEEECTTSCCCEECTT
T ss_pred cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC---------CCccEEECCCCccCccChh
Confidence 99999999999999999999999999999999999999863 22 222222 2499999999999999999
Q ss_pred hhhcCCCCCEEeCcCCcCcccCCCCcc--CCCcEEEcCCCccccccCccCCCC---CCCCCCCCCCCCC
Q 003307 478 GISKFHNLVYLNLSNNKFEGSIPDGLP--NGLKEFNVSFNNLSGVVPENLRNF---PDSAFHPGNSLLT 541 (832)
Q Consensus 478 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~--~~L~~l~ls~N~l~g~~p~~~~~~---~~~~~~~~n~~~~ 541 (832)
.+..+++|+.|+|++|++++.+|..+. ..| .|++++|++++..|..+..+ ....+ .+|+..|
T Consensus 495 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l-~~N~~~c 561 (606)
T 3t6q_A 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINL-RQNPLDC 561 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEEC-TTCCEEC
T ss_pred hhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeC-CCCCccc
Confidence 999999999999999999999888876 678 99999999999888764433 22223 3676655
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-47 Score=446.08 Aligned_cols=445 Identities=20% Similarity=0.144 Sum_probs=370.0
Q ss_pred CcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEE
Q 003307 65 GYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLN 143 (832)
Q Consensus 65 ~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 143 (832)
.+++.|+++++.+.+.. +..+.++++|++|+|++|.+++..| .|+++++|++|+|++|.+++..|..|+++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeC-hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 57899999999998755 5689999999999999999999888 899999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCEeeCcCCCCCC-ccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCC-ccEEECCC
Q 003307 144 ISSNSFEGTFPSGFGGLGKLKYLDLRANRFGG-DIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISS-IQYLNISE 221 (832)
Q Consensus 144 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~-L~~L~L~~ 221 (832)
|++|.+++..+..|+++++|++|+|++|++++ .+|..|+++++|++|++++|++++..+..++.+..++. ++.|++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 99999998888899999999999999999986 56999999999999999999999877777766554544 56899999
Q ss_pred CCCeeccCCCCCCCCCCCcCEEEccCCccc--------------------------------------------------
Q 003307 222 NSLVGELFPHDGMPYFDNLEVFDASNNHLV-------------------------------------------------- 251 (832)
Q Consensus 222 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-------------------------------------------------- 251 (832)
|.+++..+.. +... +|+.|++++|.++
T Consensus 191 n~l~~~~~~~--~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 267 (606)
T 3vq2_A 191 NPIDFIQDQA--FQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267 (606)
T ss_dssp CCCCEECTTT--TTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEE
T ss_pred CCcceeCccc--ccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhee
Confidence 9987544333 4433 7888888887654
Q ss_pred --------ccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecc
Q 003307 252 --------GAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSG 323 (832)
Q Consensus 252 --------~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~ 323 (832)
+.+|.+..+++|+.|++++|.+. .+| .+ ..+++|+.|++++|.+ +.+|....++|+.|++++|+..+
T Consensus 268 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l--~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~ 342 (606)
T 3vq2_A 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DV--PKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSI 342 (606)
T ss_dssp ECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CC--CTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCE
T ss_pred ccccccccccccccccCCCCCEEEecCccch-hhh-hc--cccccCCEEEcccccC-cccccCCCCccceeeccCCcCcc
Confidence 22334566788888999988886 566 44 5677899999999998 44554466789999999995544
Q ss_pred cCC-CCCCCCCEEecCCCCCcCcc--hhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcc-cccC
Q 003307 324 SLP-ARVGHCTIVDLSNNRLSGDL--SRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLP-AVLG 399 (832)
Q Consensus 324 ~~p-~~l~~l~~L~L~~N~l~~~~--~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~ 399 (832)
.++ ..+.+|+.|++++|++++.. +..+...++|++|++++|.+++ +|..+..+++|+.|++++|++++..| ..+.
T Consensus 343 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 421 (606)
T 3vq2_A 343 SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421 (606)
T ss_dssp ECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred chhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhh
Confidence 332 35678889999999998763 4555556689999999999886 45788899999999999999998877 6888
Q ss_pred CCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCccccc-CCcccccCCCCCcccCcccccEEEccCCcCcccCChh
Q 003307 400 TYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGP-LPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPG 478 (832)
Q Consensus 400 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~ 478 (832)
.+++|++|++++|++++..|..+..+++|++|+|++|++++. +|..+.... +|++|+|++|++++..|..
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~---------~L~~L~Ls~n~l~~~~~~~ 492 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT---------NLTFLDLSKCQLEQISWGV 492 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT---------TCCEEECTTSCCCEECTTT
T ss_pred ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC---------CCCEEECCCCcCCccChhh
Confidence 999999999999999998899999999999999999999874 565544433 4999999999999998999
Q ss_pred hhcCCCCCEEeCcCCcCcccCCCCcc--CCCcEEEcCCCccccccCccCCCCC
Q 003307 479 ISKFHNLVYLNLSNNKFEGSIPDGLP--NGLKEFNVSFNNLSGVVPENLRNFP 529 (832)
Q Consensus 479 l~~l~~L~~L~Ls~N~l~g~ip~~~~--~~L~~l~ls~N~l~g~~p~~~~~~~ 529 (832)
+.++++|+.|+|++|++++.+|..+. .+|+.|++++|+++ .+|..+..++
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~ 544 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFP 544 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSC
T ss_pred hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhc
Confidence 99999999999999999988887776 68999999999998 4565565554
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-47 Score=449.56 Aligned_cols=473 Identities=20% Similarity=0.159 Sum_probs=256.9
Q ss_pred CcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEE
Q 003307 65 GYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLN 143 (832)
Q Consensus 65 ~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 143 (832)
.+++.|+++++++.+.. +..+.++++|++|+|++|.+++..| .|+++++|++|+|++|.++++.+..|+++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCC-GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcC-HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 35666666666665532 3445566666666666666655555 455556666666666655554444555555566666
Q ss_pred cccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCcc------------------------
Q 003307 144 ISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSG------------------------ 199 (832)
Q Consensus 144 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~------------------------ 199 (832)
|++|++++..|..|+++++|++|+|++|.+++..+..+.++++|++|++++|.+++
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 65555555555555555555555555555555555555555555555555555543
Q ss_pred --ccCCCCCCCCCC------------------------CCccEEECCCCCCeeccCCCCCCCCCCC--cCEEEccCCccc
Q 003307 200 --SLDLGLGDSSFI------------------------SSIQYLNISENSLVGELFPHDGMPYFDN--LEVFDASNNHLV 251 (832)
Q Consensus 200 --~~~~~~~~~~~l------------------------~~L~~L~L~~N~l~~~~~~~~~~~~l~~--L~~L~Ls~N~l~ 251 (832)
..|..+..+..+ ++|+.|++++|.+++..+.. +..++. |+.|++++|.++
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~--~~~l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT--FLGLKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT--TGGGGGSCCCEEECTTSCCC
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH--hhccCcCCCCEEECCCCCcC
Confidence 333222222111 34566666666665554444 555544 888888888888
Q ss_pred ccCC-CccccccccEEEccccCCCCCCChhhhh-------------------------------hCCCCCCEEECCCCCC
Q 003307 252 GAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQ-------------------------------ESSMMLSELDLSLNQL 299 (832)
Q Consensus 252 ~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~-------------------------------~~~~~L~~L~L~~N~l 299 (832)
+..+ .+..+++|++|++++|++++..|..+.. ..+++|++|++++|.+
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l 341 (680)
T 1ziw_A 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB
T ss_pred ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc
Confidence 7776 6788888888888888887665544410 1233444445555544
Q ss_pred CCccCcc--CCCCCCEEEecCCeecccC-CC-CC-----CCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCC--
Q 003307 300 EGPVGSI--TSATLKKVNLSSNKLSGSL-PA-RV-----GHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTG-- 368 (832)
Q Consensus 300 ~~~~~~~--~~~~L~~L~L~~N~l~~~~-p~-~l-----~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~-- 368 (832)
++..+.. ...+|++|++++|.+.... +. .+ .+++.|++++|++++..+..+....+|+.|+|++|.+++
T Consensus 342 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred CCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence 4433211 1123333333333211100 00 00 122333333333333333333333344444444444443
Q ss_pred -----------------------CCcccccCCCCCCEEEccCCcCC--CCcccccCCCCCCCEEEccCCcccccCccccc
Q 003307 369 -----------------------MVPNQTSQFLRLTSFKVSNNSLE--GDLPAVLGTYPELKVIDLSLNHLNGFLLPSFF 423 (832)
Q Consensus 369 -----------------------~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 423 (832)
..+..|..+++|+.|++++|.++ +.+|..+..+++|+.|++++|++++..+..|.
T Consensus 422 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 501 (680)
T 1ziw_A 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501 (680)
T ss_dssp CSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc
Confidence 33333333444444444444433 33455555666666666666666665555566
Q ss_pred CCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCc
Q 003307 424 TSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGL 503 (832)
Q Consensus 424 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 503 (832)
++++|++|+|++|++++..+..+.. .+........+|++|+|++|+++...+..|.++++|+.|+|++|++++..+..+
T Consensus 502 ~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 580 (680)
T 1ziw_A 502 GLEKLEILDLQHNNLARLWKHANPG-GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF 580 (680)
T ss_dssp TCTTCCEEECCSSCCGGGGSTTSTT-SCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccccCEEeCCCCCccccchhhccC-CcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHh
Confidence 6666666666666665432111000 000011222358888888888885545568888899999999998885444444
Q ss_pred c--CCCcEEEcCCCccccccCccCC----CCCCCCCCCCCCCCCC
Q 003307 504 P--NGLKEFNVSFNNLSGVVPENLR----NFPDSAFHPGNSLLTF 542 (832)
Q Consensus 504 ~--~~L~~l~ls~N~l~g~~p~~~~----~~~~~~~~~~n~~~~~ 542 (832)
. .+|+.|++++|++++..|..+. .+....+ .+|+..|.
T Consensus 581 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l-~~N~~~c~ 624 (680)
T 1ziw_A 581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM-RFNPFDCT 624 (680)
T ss_dssp TTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEEC-TTCCCCBC
T ss_pred CCCCCCCEEECCCCcCCccChhHhcccccccCEEEc-cCCCcccC
Confidence 3 6888999999998887776432 3332233 37777664
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-47 Score=444.75 Aligned_cols=426 Identities=18% Similarity=0.132 Sum_probs=367.6
Q ss_pred CCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeC
Q 003307 90 KMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDL 168 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 168 (832)
..+++|||++|.+++..+ .|+++++|++|+|++|.++++.|..|.++++|++|+|++|.+++..|..|+++++|++|+|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 378999999999999988 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcC--EEEcc
Q 003307 169 RANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLE--VFDAS 246 (832)
Q Consensus 169 ~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~--~L~Ls 246 (832)
++|++++..+..++++++|++|++++|.+++.....+ ..+++|+.|++++|.+++..+.. +..+++|+ .|+++
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG---FPTEKLKVLDFQNNAIHYLSKED--MSSLQQATNLSLNLN 187 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTT---CCCTTCCEEECCSSCCCEECHHH--HHTTTTCCSEEEECT
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccc---cCCcccCEEEcccCcccccChhh--hhhhcccceeEEecC
Confidence 9999999888889999999999999999986332222 23799999999999998765554 77888888 89999
Q ss_pred CCcccccCC-Ccccc---------------------------------------------------ccccEEEccccCCC
Q 003307 247 NNHLVGAIP-SFNFV---------------------------------------------------FSLRILRLGSNQLS 274 (832)
Q Consensus 247 ~N~l~~~~~-~~~~l---------------------------------------------------~~L~~L~L~~N~l~ 274 (832)
+|.+++..| .+... .+|+.|++++|+++
T Consensus 188 ~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred CCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 999998777 33211 16788899999998
Q ss_pred CCCChhhhhhCCCCCCEEECCCCCCCCccCc-cCCCCCCEEEecCCeecccCCC---CCCCCCEEecCCCCCcCcch-hh
Q 003307 275 GSLPVALLQESSMMLSELDLSLNQLEGPVGS-ITSATLKKVNLSSNKLSGSLPA---RVGHCTIVDLSNNRLSGDLS-RM 349 (832)
Q Consensus 275 ~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~-~~~~~L~~L~L~~N~l~~~~p~---~l~~l~~L~L~~N~l~~~~~-~~ 349 (832)
+..+..+ ..+++|++|++++|+++..... ....+|++|++++|++++..|. .+.+|+.|++++|.+.+.++ ..
T Consensus 268 ~~~~~~~--~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 268 NISSNTF--HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp SCCTTTT--TTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred ccCHHHh--ccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence 6555555 5788999999999999965443 3346999999999999987664 45678999999999986554 44
Q ss_pred ccccCcccEEEcCCCcCCCCC--cccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCccc-ccCCC
Q 003307 350 QNWGNYVEDIHLSSNFLTGMV--PNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPS-FFTST 426 (832)
Q Consensus 350 ~~~~~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~ 426 (832)
+...++|++|++++|.+++.. +..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+.. +..++
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 666778999999999999876 788999999999999999999989999999999999999999999887655 88999
Q ss_pred CCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCccc---CChhhhcCCCCCEEeCcCCcCcccCCCCc
Q 003307 427 KLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGR---LLPGISKFHNLVYLNLSNNKFEGSIPDGL 503 (832)
Q Consensus 427 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 503 (832)
+|+.|++++|.+++..|..+.... +|++|+|++|++++. .+..+..+++|+.|+|++|++++..|..+
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~---------~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 496 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLP---------ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCT---------TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT
T ss_pred cCCEEECCCCccCCcCHHHHhCCC---------CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh
Confidence 999999999999987776554443 499999999999873 33679999999999999999999888877
Q ss_pred c--CCCcEEEcCCCccccccCccCCCCCCC
Q 003307 504 P--NGLKEFNVSFNNLSGVVPENLRNFPDS 531 (832)
Q Consensus 504 ~--~~L~~l~ls~N~l~g~~p~~~~~~~~~ 531 (832)
. ++|+.|++++|++++..|..+..++..
T Consensus 497 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp TTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred ccccCCCEEECCCCccCcCChhHhCccccc
Confidence 6 789999999999999999887766543
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-47 Score=465.51 Aligned_cols=474 Identities=20% Similarity=0.165 Sum_probs=297.5
Q ss_pred CCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccC-C-CCCCCCCCCEEECCCCCCCccCcc
Q 003307 54 PRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNI-T-DIGSIQSLEFLDLSHNLFHGLIPS 131 (832)
Q Consensus 54 ~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~-~~~~l~~L~~L~Ls~N~l~~~~p~ 131 (832)
.+.|..|.+-..+++.|+|+++.+.+.. +..+.++++|++|||++|.+.+.+ | .|.++++|++|+|++|.|++..|.
T Consensus 13 ~~~L~~vP~lp~~l~~LdLs~N~i~~i~-~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 13 FCNLTQVPQVLNTTERLLLSFNYIRTVT-ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCCSSCCCSSCTTCCEEEEESCCCCEEC-SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCCCCCCCcCEEECCCCcCCccC-hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 4578888876678999999999988765 578999999999999999766665 5 799999999999999999999999
Q ss_pred cccCCCCCCEEEcccccccccCCCC--CCCCCCCCEeeCcCCCCCCccc-hhhhcCCCCCEEECccCcCccccCCCCCCC
Q 003307 132 GIVSLKNLMLLNISSNSFEGTFPSG--FGGLGKLKYLDLRANRFGGDIM-HLLSQLGSVVHVDLSNNQFSGSLDLGLGDS 208 (832)
Q Consensus 132 ~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 208 (832)
.|.++++|++|+|++|.+++.+|.. |.++++|++|+|++|.+++..+ ..|+++++|++|+|++|.+++..+..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 9999999999999999999866665 8999999999999999988755 679999999999999999987665544332
Q ss_pred CCCCCccEEECCCCCCeeccCCCCCCCCCCC------cCEEEccCCcccccCC-Cccc----------------------
Q 003307 209 SFISSIQYLNISENSLVGELFPHDGMPYFDN------LEVFDASNNHLVGAIP-SFNF---------------------- 259 (832)
Q Consensus 209 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~------L~~L~Ls~N~l~~~~~-~~~~---------------------- 259 (832)
.. ++|+.|+++.|.+.+..+.. +..+.+ |+.|++++|.+++..+ .+..
T Consensus 172 ~~-~~L~~L~L~~n~l~~~~~~~--~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~ 248 (844)
T 3j0a_A 172 QG-KTLSFFSLAANSLYSRVSVD--WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248 (844)
T ss_dssp HH-CSSCCCEECCSBSCCCCCCC--CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS
T ss_pred cC-CccceEECCCCccccccccc--hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccc
Confidence 11 45555566666555544433 333322 5555555555443333 1110
Q ss_pred ----------------cccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCcc--CCCCCCEEEecCCee
Q 003307 260 ----------------VFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSI--TSATLKKVNLSSNKL 321 (832)
Q Consensus 260 ----------------l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~--~~~~L~~L~L~~N~l 321 (832)
.++|+.|++++|.+.+..|..+ ..+++|+.|+|++|++++..+.. ...+|++|+|++|++
T Consensus 249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l 326 (844)
T 3j0a_A 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF--ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326 (844)
T ss_dssp CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS--SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC
T ss_pred ccccCCCChhhhhccccCCccEEECCCCcccccChhhh--hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC
Confidence 1233344444444333322222 23333444444444443332211 122344444444443
Q ss_pred cccCCCCC---CCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCC------------------CcccccCCCCC
Q 003307 322 SGSLPARV---GHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGM------------------VPNQTSQFLRL 380 (832)
Q Consensus 322 ~~~~p~~l---~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~------------------~p~~~~~l~~L 380 (832)
++..|..+ .+|+.|++++|++.+..+..+...++|+.|+|++|.+++. +|.. ..++
T Consensus 327 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~---~~~l 403 (844)
T 3j0a_A 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKI---NLTA 403 (844)
T ss_dssp SCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCC---CTTC
T ss_pred CccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccccc---cccc
Confidence 33322221 2233344444444333333333333344444444333321 1211 2334
Q ss_pred CEEEccCCcCCCCc-ccccCCCCCCCEEEccCCcccccCcc-cccCCCCCCeEeccCCcccccCCcccccCCCCCcccCc
Q 003307 381 TSFKVSNNSLEGDL-PAVLGTYPELKVIDLSLNHLNGFLLP-SFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQN 458 (832)
Q Consensus 381 ~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~ 458 (832)
+.|++++|++++.. +..+..+++|+.|+|++|++++..+. .+..+++|+.|+|++|.+++..+..... ......
T Consensus 404 ~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~----~~~~~l 479 (844)
T 3j0a_A 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW----DVFEGL 479 (844)
T ss_dssp CEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCS----SCSSCB
T ss_pred ceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccch----hhhcCc
Confidence 44555555554321 22344666777777777777654433 2445667777777777765332211100 011122
Q ss_pred ccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCccCCCcEEEcCCCccccccCccCCCCCCCCCCCCCC
Q 003307 459 LSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFPDSAFHPGNS 538 (832)
Q Consensus 459 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~L~~l~ls~N~l~g~~p~~~~~~~~~~~~~~n~ 538 (832)
.+|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..|..+..+|+.|++++|++++.+|..|..+....+. +|+
T Consensus 480 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~-~Np 558 (844)
T 3j0a_A 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDIT-HNK 558 (844)
T ss_dssp CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEE-EEC
T ss_pred ccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEec-CCC
Confidence 3599999999999999888899999999999999999987777777899999999999999999887655433332 555
Q ss_pred CCC
Q 003307 539 LLT 541 (832)
Q Consensus 539 ~~~ 541 (832)
..|
T Consensus 559 ~~C 561 (844)
T 3j0a_A 559 FIC 561 (844)
T ss_dssp CCC
T ss_pred ccc
Confidence 544
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-45 Score=428.99 Aligned_cols=441 Identities=19% Similarity=0.145 Sum_probs=362.3
Q ss_pred CCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEE
Q 003307 64 NGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLL 142 (832)
Q Consensus 64 ~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 142 (832)
+.+++.|+++++.+.+.. +..+.++++|++|||++|++++..+ .|+++++|++|+|++|.+++..|..|.++++|++|
T Consensus 27 ~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp CSSCCEEECCSCCCCEEC-TTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred cccccEEEccCCccCccC-hhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 456899999999988754 5689999999999999999999887 79999999999999999999988999999999999
Q ss_pred EcccccccccCCCCCCCCCCCCEeeCcCCCCCC-ccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCc-cEEECC
Q 003307 143 NISSNSFEGTFPSGFGGLGKLKYLDLRANRFGG-DIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSI-QYLNIS 220 (832)
Q Consensus 143 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L-~~L~L~ 220 (832)
++++|++++..+..|+++++|++|+|++|.+++ .+|..|+++++|++|++++|.+++..+..++.+..++.+ +.|+++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 999999998777689999999999999999987 469999999999999999999997766666554333322 799999
Q ss_pred CCCCeeccCCCCCCCCCCCcCEEEccCC----------------------------------------------------
Q 003307 221 ENSLVGELFPHDGMPYFDNLEVFDASNN---------------------------------------------------- 248 (832)
Q Consensus 221 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N---------------------------------------------------- 248 (832)
+|.+++..+.. +... +|+.|++++|
T Consensus 186 ~n~l~~~~~~~--~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 262 (570)
T 2z63_A 186 LNPMNFIQPGA--FKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262 (570)
T ss_dssp TCCCCEECTTT--TTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred CCCceecCHHH--hccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence 99998765544 5544 6888887776
Q ss_pred ------cccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCee
Q 003307 249 ------HLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKL 321 (832)
Q Consensus 249 ------~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l 321 (832)
.+.+..+ .+..+++|+.|++++|.++ .+|..+ ... +|++|++++|.+. .++.....+|+.|++++|.+
T Consensus 263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~--~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~ 337 (570)
T 2z63_A 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFS--YNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKG 337 (570)
T ss_dssp EEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCC--SCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBS
T ss_pred hhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhh--ccC-CccEEeeccCccc-ccCcccccccCEEeCcCCcc
Confidence 2333344 5677888999999999887 577666 344 8899999999888 44445567899999999988
Q ss_pred cccCC-CCCCCCCEEecCCCCCcCcc--hhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcc-cc
Q 003307 322 SGSLP-ARVGHCTIVDLSNNRLSGDL--SRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLP-AV 397 (832)
Q Consensus 322 ~~~~p-~~l~~l~~L~L~~N~l~~~~--~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~ 397 (832)
.+..+ ..+.+|+.|++++|++++.. +..+...++|+.|++++|.+++..+. +..+++|++|++++|.+++..| ..
T Consensus 338 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp CCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCT
T ss_pred ccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhh
Confidence 87666 35678889999999988764 44445556799999999998876555 8889999999999999987766 56
Q ss_pred cCCCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCccc-ccCCcccccCCCCCcccCcccccEEEccCCcCcccCC
Q 003307 398 LGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFS-GPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLL 476 (832)
Q Consensus 398 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p 476 (832)
+..+++|++|++++|++.+..+..|..+++|+.|+|++|+++ +.+|..+.... +|++|+|++|++++..|
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~---------~L~~L~l~~n~l~~~~~ 487 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR---------NLTFLDLSQCQLEQLSP 487 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT---------TCCEEECTTSCCCEECT
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc---------CCCEEECCCCccccCCh
Confidence 888899999999999999888888888999999999999987 56775544433 48999999999998888
Q ss_pred hhhhcCCCCCEEeCcCCcCcccCCCCcc--CCCcEEEcCCCccccccCc
Q 003307 477 PGISKFHNLVYLNLSNNKFEGSIPDGLP--NGLKEFNVSFNNLSGVVPE 523 (832)
Q Consensus 477 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~--~~L~~l~ls~N~l~g~~p~ 523 (832)
..+..+++|+.|+|++|++++..|..+. ++|+.|++++|+++|.+|.
T Consensus 488 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 488 TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 8899999999999999999887776664 6889999999999888774
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=431.78 Aligned_cols=441 Identities=20% Similarity=0.187 Sum_probs=296.4
Q ss_pred cEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEc
Q 003307 66 YVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNI 144 (832)
Q Consensus 66 ~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 144 (832)
.++.|+++++.+.+.. +..+.++++|++|+|++|.+++.++ .|+.+++|++|+|++|.++++.|..|+++++|++|+|
T Consensus 50 ~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 50 QLTSLDVGFNTISKLE-PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TCSEEECCSSCCCCCC-TTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred cCcEEECCCCccCccC-HHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 4666777776666544 3556667777777777777666555 5666777777777777776666666667777777777
Q ss_pred ccccccccCCCCCCCCCCCCEeeCcCCCCCCccchh--------------------------hhcC--------------
Q 003307 145 SSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHL--------------------------LSQL-------------- 184 (832)
Q Consensus 145 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~--------------------------l~~l-------------- 184 (832)
++|.+++..|..|.++++|++|+|++|++++..+.. +..+
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 208 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCH
T ss_pred CCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccC
Confidence 777776666666666666666666666655544433 2221
Q ss_pred -------------CCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCccc
Q 003307 185 -------------GSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLV 251 (832)
Q Consensus 185 -------------~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 251 (832)
++|++|++++|.+++..|..+..+. .++|+.|++++|.+++..+.. +..+++|+.|++++|.+.
T Consensus 209 ~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~-~~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~ 285 (680)
T 1ziw_A 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK-WTNLTMLDLSYNNLNVVGNDS--FAWLPQLEYFFLEYNNIQ 285 (680)
T ss_dssp HHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGG-GSCCCEEECTTSCCCEECTTT--TTTCTTCCEEECCSCCBS
T ss_pred hhhHHHHHHHhhhccccEEEccCCcccccChhHhhccC-cCCCCEEECCCCCcCccCccc--ccCcccccEeeCCCCccC
Confidence 2344444444445444443332221 022555555555554443333 444555555555555444
Q ss_pred ccCC----------------------------------CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCC
Q 003307 252 GAIP----------------------------------SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLN 297 (832)
Q Consensus 252 ~~~~----------------------------------~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N 297 (832)
+..| .+..+++|++|++++|++++..+..+ ..+++|++|++++|
T Consensus 286 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 286 HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF--TGLINLKYLSLSNS 363 (680)
T ss_dssp EECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT--TTCTTCCEEECTTC
T ss_pred ccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHh--ccccCCcEEECCCC
Confidence 3322 23445666666667777765544444 34555555555555
Q ss_pred ----------------------------CCCCccCcc--CCCCCCEEEecCCeecccCCC----CCCCCCEEecCCCCCc
Q 003307 298 ----------------------------QLEGPVGSI--TSATLKKVNLSSNKLSGSLPA----RVGHCTIVDLSNNRLS 343 (832)
Q Consensus 298 ----------------------------~l~~~~~~~--~~~~L~~L~L~~N~l~~~~p~----~l~~l~~L~L~~N~l~ 343 (832)
++++..+.. ...+|+.|++++|++++.+|. .+.+|+.|++++|++.
T Consensus 364 ~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 443 (680)
T 1ziw_A 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443 (680)
T ss_dssp BSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE
T ss_pred chhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc
Confidence 444433321 234666666666666655442 3445666777777766
Q ss_pred CcchhhccccCcccEEEcCCCcCC--CCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCc--
Q 003307 344 GDLSRMQNWGNYVEDIHLSSNFLT--GMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLL-- 419 (832)
Q Consensus 344 ~~~~~~~~~~~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-- 419 (832)
+..+..+...++|+.|++++|.++ +.+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+
T Consensus 444 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 523 (680)
T 1ziw_A 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 523 (680)
T ss_dssp ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTT
T ss_pred eeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhh
Confidence 666656666678888999888887 5689999999999999999999998888889999999999999999987532
Q ss_pred ------ccccCCCCCCeEeccCCcccccCCcc-cccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcC
Q 003307 420 ------PSFFTSTKLTDLNLSGNNFSGPLPLQ-EIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSN 492 (832)
Q Consensus 420 ------~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 492 (832)
..|.++++|+.|+|++|+++ .+|.. +..+. +|+.|||++|++++..+..|..+++|+.|+|++
T Consensus 524 ~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~---------~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~ 593 (680)
T 1ziw_A 524 NPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLF---------ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593 (680)
T ss_dssp STTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCT---------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred ccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHccccc---------CcceeECCCCCCCcCCHhHhCCCCCCCEEECCC
Confidence 24788999999999999998 45543 33332 499999999999987777889999999999999
Q ss_pred CcCcccCCCCcc---CCCcEEEcCCCccccccC
Q 003307 493 NKFEGSIPDGLP---NGLKEFNVSFNNLSGVVP 522 (832)
Q Consensus 493 N~l~g~ip~~~~---~~L~~l~ls~N~l~g~~p 522 (832)
|++++..|..+. .+|+.+++++|++.+..+
T Consensus 594 N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 594 NLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp SCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 999987766543 789999999999999876
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-45 Score=432.69 Aligned_cols=440 Identities=18% Similarity=0.132 Sum_probs=358.7
Q ss_pred EEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccc
Q 003307 69 SIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSN 147 (832)
Q Consensus 69 ~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 147 (832)
.+++++.++.. + |..+. ++|++|+|++|.+++..+ .|.++++|++|+|++|.++++.|..|.++++|++|+|++|
T Consensus 15 ~~~c~~~~l~~-i-p~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 15 TYQCMDQKLSK-V-PDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp EEECTTSCCSS-C-CTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEccCCCccc-C-CCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 45666666653 2 22232 789999999999999988 8999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCcc-ccCCCCCCCCCCCCccEEECCCCCCee
Q 003307 148 SFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSG-SLDLGLGDSSFISSIQYLNISENSLVG 226 (832)
Q Consensus 148 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~~l~~L~~L~L~~N~l~~ 226 (832)
.+++..|..|+++++|++|+|++|++++..+..++++++|++|++++|.+++ .+|..++ .+++|++|++++|.+++
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~---~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS---NLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGG---TCTTCCEEECCSSCCCE
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHh---hcCCCCEEEccCCccee
Confidence 9999889999999999999999999998888889999999999999999986 4566555 45899999999999998
Q ss_pred ccCCCCCCCCCCCcC----EEEccCCcccccCCCccccccccEEEccccCCCCC-CChhhh-------------------
Q 003307 227 ELFPHDGMPYFDNLE----VFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGS-LPVALL------------------- 282 (832)
Q Consensus 227 ~~~~~~~~~~l~~L~----~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~-~p~~~~------------------- 282 (832)
..+.. +..+.+|+ .|++++|.+++..+......+|+.|++++|.+++. +|..+.
T Consensus 168 ~~~~~--~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 245 (606)
T 3vq2_A 168 ITVND--LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245 (606)
T ss_dssp ECTTT--THHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred cChhh--hhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCC
Confidence 66655 76666654 89999999998777444445899999999987521 111110
Q ss_pred -----------------------------------hhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCC
Q 003307 283 -----------------------------------QESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPA 327 (832)
Q Consensus 283 -----------------------------------~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~ 327 (832)
...+++|+.|++++|.+..........+|+.|++++|++ +.+|.
T Consensus 246 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~ 324 (606)
T 3vq2_A 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPT 324 (606)
T ss_dssp CCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCC
T ss_pred cccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-ccccc
Confidence 023567788888888876654333446888888888888 56664
Q ss_pred -CCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCC--CcccccCCCCCCEEEccCCcCCCCcccccCCCCCC
Q 003307 328 -RVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGM--VPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPEL 404 (832)
Q Consensus 328 -~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 404 (832)
.+.+|+.|++++|+..+.. .+...++|+.|++++|.+++. +|..+..+++|++|++++|.+++ +|..+..+++|
T Consensus 325 ~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L 401 (606)
T 3vq2_A 325 LDLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEEL 401 (606)
T ss_dssp CCCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTC
T ss_pred CCCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCC
Confidence 4556788888888655443 233455799999999999876 47888899999999999999884 66888899999
Q ss_pred CEEEccCCcccccCc-ccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcc-cCChhhhcC
Q 003307 405 KVIDLSLNHLNGFLL-PSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSG-RLLPGISKF 482 (832)
Q Consensus 405 ~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~-~~p~~l~~l 482 (832)
+.|++++|++.+..+ ..+..+++|+.|++++|++++.+|..+.... +|++|++++|++++ .+|..++.+
T Consensus 402 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------~L~~L~l~~n~l~~~~~~~~~~~l 472 (606)
T 3vq2_A 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT---------SLNTLKMAGNSFKDNTLSNVFANT 472 (606)
T ss_dssp CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT---------TCCEEECTTCEEGGGEECSCCTTC
T ss_pred CeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC---------CCCEEECCCCcCCCcchHHhhccC
Confidence 999999999998877 6788999999999999999987776554443 49999999999998 478889999
Q ss_pred CCCCEEeCcCCcCcccCCCCcc--CCCcEEEcCCCccccccCccCCCCCC
Q 003307 483 HNLVYLNLSNNKFEGSIPDGLP--NGLKEFNVSFNNLSGVVPENLRNFPD 530 (832)
Q Consensus 483 ~~L~~L~Ls~N~l~g~ip~~~~--~~L~~l~ls~N~l~g~~p~~~~~~~~ 530 (832)
++|+.|+|++|++++..|..+. .+|+.|++++|++++.+|..+..++.
T Consensus 473 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 522 (606)
T 3vq2_A 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTT
T ss_pred CCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCc
Confidence 9999999999999988888776 78999999999999988887766543
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=439.17 Aligned_cols=436 Identities=19% Similarity=0.154 Sum_probs=323.6
Q ss_pred CcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCccc--ccCCCCCCE
Q 003307 65 GYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSG--IVSLKNLML 141 (832)
Q Consensus 65 ~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~ 141 (832)
..++.|+|+++...+.+++..+.++++|++|+|++|.+.+..| .|+.+++|++|+|++|.+++.+|.. |.++++|++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 4578899999988888877889999999999999999999988 8999999999999999999876665 999999999
Q ss_pred EEcccccccccCC-CCCCCCCCCCEeeCcCCCCCCccchhhhcC--CCCCEEECccCcCccccCCCCCCCCC--------
Q 003307 142 LNISSNSFEGTFP-SGFGGLGKLKYLDLRANRFGGDIMHLLSQL--GSVVHVDLSNNQFSGSLDLGLGDSSF-------- 210 (832)
Q Consensus 142 L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l--~~L~~L~Ls~N~l~~~~~~~~~~~~~-------- 210 (832)
|+|++|.+++..+ ..|+++++|++|+|++|.+++..+..+..+ ++|+.|+|+.|.+++..+..++.+..
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~ 207 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE 207 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBS
T ss_pred EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCcee
Confidence 9999999998765 579999999999999999998888888776 67777777777766655544333211
Q ss_pred ---------------------------------------------------------CCCccEEECCCCCCeeccCCCCC
Q 003307 211 ---------------------------------------------------------ISSIQYLNISENSLVGELFPHDG 233 (832)
Q Consensus 211 ---------------------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~ 233 (832)
.++|+.|++++|.+.+..+..
T Consensus 208 ~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~-- 285 (844)
T 3j0a_A 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV-- 285 (844)
T ss_dssp EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC--
T ss_pred EEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh--
Confidence 134555555555554443333
Q ss_pred CCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCcc--CCCC
Q 003307 234 MPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSI--TSAT 310 (832)
Q Consensus 234 ~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~--~~~~ 310 (832)
+..+++|+.|++++|.+++..+ .|..+++|++|+|++|++++..|..+ ..+++|+.|++++|.+.+..+.. ..++
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 363 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF--YGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC--SSCTTCCEEECCSCCCCCCCSSCSCSCCC
T ss_pred hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh--cCCCCCCEEECCCCCCCccChhhhcCCCC
Confidence 5555556666666666555544 45555566666666666554444444 34555666666666555444321 2345
Q ss_pred CCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCC-cccccCCCCCCEEEccCCc
Q 003307 311 LKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMV-PNQTSQFLRLTSFKVSNNS 389 (832)
Q Consensus 311 L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~ 389 (832)
|+.|++++|.+++.. . +.+++.|++++|+++.... ....++.|++++|.+++.. +..+..+++|++|+|++|+
T Consensus 364 L~~L~Ls~N~l~~i~-~-~~~L~~L~l~~N~l~~l~~----~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 364 LQTLDLRDNALTTIH-F-IPSIPDIFLSGNKLVTLPK----INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437 (844)
T ss_dssp CCEEEEETCCSCCCS-S-CCSCSEEEEESCCCCCCCC----CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred CCEEECCCCCCCccc-C-CCCcchhccCCCCcccccc----cccccceeecccCccccCchhhhhhcCCccceeeCCCCc
Confidence 666666666655321 1 4555666666666653322 2346899999999998753 3345689999999999999
Q ss_pred CCCCccc-ccCCCCCCCEEEccCCccc-----ccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccE
Q 003307 390 LEGDLPA-VLGTYPELKVIDLSLNHLN-----GFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTS 463 (832)
Q Consensus 390 l~~~~p~-~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~ 463 (832)
+++..+. .+..+++|+.|++++|.++ +..+..|.++++|+.|+|++|++++..|..+.... +|+.
T Consensus 438 l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---------~L~~ 508 (844)
T 3j0a_A 438 FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT---------ALRG 508 (844)
T ss_dssp CCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCC---------SCSE
T ss_pred ccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchh---------hhhe
Confidence 9975543 4566899999999999997 44556788999999999999999987776554443 4999
Q ss_pred EEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCccCCCcEEEcCCCccccccC
Q 003307 464 LDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVP 522 (832)
Q Consensus 464 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~L~~l~ls~N~l~g~~p 522 (832)
|+|++|+|++..+..+. ++|+.|||++|+|++.+|..+. +|+.+++++|++.|..+
T Consensus 509 L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~-~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 509 LSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV-SLSVLDITHNKFICECE 564 (844)
T ss_dssp EEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS-SCCEEEEEEECCCCSSS
T ss_pred eECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC-CcCEEEecCCCcccccc
Confidence 99999999987777665 8999999999999999887764 79999999999998766
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-45 Score=424.90 Aligned_cols=440 Identities=19% Similarity=0.152 Sum_probs=288.4
Q ss_pred cEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEc
Q 003307 66 YVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNI 144 (832)
Q Consensus 66 ~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 144 (832)
.++.|+++++.+.+.. +..+.++++|++|+|++|.+++..+ .|+.+++|++|+|++|.+++..|..|+++++|++|+|
T Consensus 27 ~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 27 AMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CccEEECcCCccCccC-hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 5667777777666543 3456677777777777777776665 6777777777777777777666666777777777777
Q ss_pred cccccccc-CCCCCCCCCCCCEeeCcCCCCCCcc-chhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCC
Q 003307 145 SSNSFEGT-FPSGFGGLGKLKYLDLRANRFGGDI-MHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISEN 222 (832)
Q Consensus 145 s~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N 222 (832)
++|.+++. .|..|+++++|++|+|++|.+.+.+ +..|.++++|++|++++|.+++..|..++. +++|+.|+++.|
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~---l~~L~~L~l~~n 182 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS---IRDIHHLTLHLS 182 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT---CSEEEEEEEECS
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc---cccCceEecccC
Confidence 77777652 4556777777777777777633333 356677777777777777777666655443 366677777766
Q ss_pred CCeeccCCCCCCCCCCCcCEEEccCCcccccC----CCccccccccEEEccccCCCCCCChhhhh--hCCCCCCEEECCC
Q 003307 223 SLVGELFPHDGMPYFDNLEVFDASNNHLVGAI----PSFNFVFSLRILRLGSNQLSGSLPVALLQ--ESSMMLSELDLSL 296 (832)
Q Consensus 223 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~l~~L~~L~L~~N~l~~~~p~~~~~--~~~~~L~~L~L~~ 296 (832)
.+.. ++.. .+..+++|+.|++++|++++.. +....+++|+.|++++|.+++..+..+.. ..+..|+.+++++
T Consensus 183 ~~~~-~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~ 260 (549)
T 2z81_A 183 ESAF-LLEI-FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260 (549)
T ss_dssp BSTT-HHHH-HHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred cccc-cchh-hHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence 6532 1111 0234666777777777776532 13344566777777777666544433321 2345677777777
Q ss_pred CCCCCccCc--------cCCCCCCEEEecCCeecccCC--------CCCCCCCEEecCCCCCcCcchhhccccCcccEEE
Q 003307 297 NQLEGPVGS--------ITSATLKKVNLSSNKLSGSLP--------ARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIH 360 (832)
Q Consensus 297 N~l~~~~~~--------~~~~~L~~L~L~~N~l~~~~p--------~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~ 360 (832)
|.+.+.... ....+|+.|++.++.+..... ...++++.|++++|++...+..++...++|+.|+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~ 340 (549)
T 2z81_A 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLD 340 (549)
T ss_dssp CEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEE
T ss_pred ccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEE
Confidence 766553211 122456667766665543210 1134677888888888766655555556788888
Q ss_pred cCCCcCCCCCcc---cccCCCCCCEEEccCCcCCCCcc--cccCCCCCCCEEEccCCcccccCcccccCCCCCCeEeccC
Q 003307 361 LSSNFLTGMVPN---QTSQFLRLTSFKVSNNSLEGDLP--AVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSG 435 (832)
Q Consensus 361 Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 435 (832)
|++|.+++.+|. .+..+++|++|++++|++++..+ ..+..+++|++|++++|++++ +|..+..+++|++|+|++
T Consensus 341 Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~ 419 (549)
T 2z81_A 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSS 419 (549)
T ss_dssp CCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTT
T ss_pred ccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCC
Confidence 888888876543 36777888888888888875432 457778888888888888884 566777788888888888
Q ss_pred CcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCcc-CCCcEEEcCC
Q 003307 436 NNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLP-NGLKEFNVSF 514 (832)
Q Consensus 436 N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~~L~~l~ls~ 514 (832)
|++++ +|.... .+|++|||++|++++.+ ..+++|+.|+|++|+++ .+|.... ++|++|++++
T Consensus 420 N~l~~-l~~~~~-----------~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~ 482 (549)
T 2z81_A 420 TGIRV-VKTCIP-----------QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISR 482 (549)
T ss_dssp SCCSC-CCTTSC-----------TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCS
T ss_pred CCccc-ccchhc-----------CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCCcccCccCCEEecCC
Confidence 88763 232211 13888888888888653 46788888888888887 5665322 6788888888
Q ss_pred CccccccCccCCCCC
Q 003307 515 NNLSGVVPENLRNFP 529 (832)
Q Consensus 515 N~l~g~~p~~~~~~~ 529 (832)
|++++.+|..+..++
T Consensus 483 N~l~~~~~~~~~~l~ 497 (549)
T 2z81_A 483 NQLKSVPDGIFDRLT 497 (549)
T ss_dssp SCCCCCCTTGGGGCT
T ss_pred CccCCcCHHHHhcCc
Confidence 888887777655444
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=414.30 Aligned_cols=437 Identities=17% Similarity=0.147 Sum_probs=360.0
Q ss_pred EEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEccccc
Q 003307 70 IMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNS 148 (832)
Q Consensus 70 l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 148 (832)
+++++.++.. + |..+ .++++.|||++|.+++..+ .|.++++|++|+|++|.++++.|..|.++++|++|+|++|.
T Consensus 12 ~~c~~~~l~~-i-p~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 12 YQCMELNFYK-I-PDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp EECCSSCCSS-C-CSSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEeCCCCccc-c-CCCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence 4555555543 2 1222 2579999999999999888 89999999999999999999989999999999999999999
Q ss_pred ccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCcc-ccCCCCCCCCCCCCccEEECCCCCCeec
Q 003307 149 FEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSG-SLDLGLGDSSFISSIQYLNISENSLVGE 227 (832)
Q Consensus 149 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 227 (832)
+++..|..|.++++|++|+|++|++++..+..++++++|++|++++|.+++ .+|..++ .+++|++|++++|.+++.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~---~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS---NLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGG---GCTTCCEEECTTSCCCEE
T ss_pred CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhc---ccCCCCEEeCcCCcccee
Confidence 999888999999999999999999998877789999999999999999986 3565554 468999999999999876
Q ss_pred cCCCCCCCCCCCc----CEEEccCCcccccCC-CccccccccEEEccccC------------------------------
Q 003307 228 LFPHDGMPYFDNL----EVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQ------------------------------ 272 (832)
Q Consensus 228 ~~~~~~~~~l~~L----~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~------------------------------ 272 (832)
.+.. +..+++| +.|++++|.+++..+ .+... +|+.|++++|.
T Consensus 165 ~~~~--~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~ 241 (570)
T 2z63_A 165 YCTD--LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241 (570)
T ss_dssp CGGG--GHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCS
T ss_pred cHHH--ccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCch
Confidence 5544 7777777 899999999998888 44443 78999888873
Q ss_pred ----------------------------CCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeeccc
Q 003307 273 ----------------------------LSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGS 324 (832)
Q Consensus 273 ----------------------------l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~ 324 (832)
+.+.+|..+ ..+++|+.|++++|.+++........+|++|++++|.+...
T Consensus 242 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l 319 (570)
T 2z63_A 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF--NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 319 (570)
T ss_dssp SCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTT--GGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSC
T ss_pred hhhhcchhhhccccccchhhhhhhcchhhhhhchhhh--cCcCcccEEEecCccchhhhhhhccCCccEEeeccCccccc
Confidence 223334434 45678999999999988654444334899999999998844
Q ss_pred CCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCC--cccccCCCCCCEEEccCCcCCCCcccccCCCC
Q 003307 325 LPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMV--PNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYP 402 (832)
Q Consensus 325 ~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 402 (832)
....+.+|+.|++++|.+.+..+. ...++|+.|++++|.+++.. |..+..+++|++|++++|.+++..+. +..++
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~ 396 (570)
T 2z63_A 320 PTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLE 396 (570)
T ss_dssp CBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCT
T ss_pred CcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccC
Confidence 344677889999999998876654 44567999999999998764 77888999999999999999865544 88999
Q ss_pred CCCEEEccCCcccccCc-ccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCc-ccCChhhh
Q 003307 403 ELKVIDLSLNHLNGFLL-PSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLS-GRLLPGIS 480 (832)
Q Consensus 403 ~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~~~p~~l~ 480 (832)
+|+.|++++|++.+..+ ..+..+++|++|++++|++++..|..+.... +|++|+|++|.++ +.+|..+.
T Consensus 397 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------~L~~L~l~~n~l~~~~~p~~~~ 467 (570)
T 2z63_A 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS---------SLEVLKMAGNSFQENFLPDIFT 467 (570)
T ss_dssp TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT---------TCCEEECTTCEEGGGEECSCCT
T ss_pred CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC---------cCcEEECcCCcCccccchhhhh
Confidence 99999999999998766 5688899999999999999887776554443 4999999999998 67889999
Q ss_pred cCCCCCEEeCcCCcCcccCCCCcc--CCCcEEEcCCCccccccCccCCCCCC
Q 003307 481 KFHNLVYLNLSNNKFEGSIPDGLP--NGLKEFNVSFNNLSGVVPENLRNFPD 530 (832)
Q Consensus 481 ~l~~L~~L~Ls~N~l~g~ip~~~~--~~L~~l~ls~N~l~g~~p~~~~~~~~ 530 (832)
.+++|+.|+|++|++++..|..+. ++|++|++++|++++..|..+..++.
T Consensus 468 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 519 (570)
T 2z63_A 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519 (570)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred cccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccC
Confidence 999999999999999988888776 78999999999999988776655543
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=409.10 Aligned_cols=407 Identities=20% Similarity=0.187 Sum_probs=240.9
Q ss_pred CCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeC
Q 003307 90 KMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDL 168 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 168 (832)
++|++|+|++|.+++..+ .|..+++|++|+|++|+|++..|..|.++++|++|+|++|+|+. +|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEec
Confidence 455555555555555444 45555555555555555555555555555555555555555552 3333 4555555555
Q ss_pred cCCCCCC-ccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCc--cEEECCCCCC--eeccCCC------------
Q 003307 169 RANRFGG-DIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSI--QYLNISENSL--VGELFPH------------ 231 (832)
Q Consensus 169 ~~N~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L--~~L~L~~N~l--~~~~~~~------------ 231 (832)
++|++++ .+|..|+++++|++|++++|.+++. .+. .+++| +.|++++|.+ .+..+..
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~---~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVL---PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGG---GGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred cCCccccccchhhhccCCcceEEEecCcccchh---hcc---ccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 5555554 2445555555555555555555431 111 12333 5555555555 3333222
Q ss_pred ------------CCCCCCCCcCEEEccCCc-------ccccCCCccccccccEEEccccCCCCCCChhhhh-hCCCCCCE
Q 003307 232 ------------DGMPYFDNLEVFDASNNH-------LVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQ-ESSMMLSE 291 (832)
Q Consensus 232 ------------~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~~~~L~~ 291 (832)
..+..+++|+.|++++|. +.+.++.+..+++|+.|++++|.+++..+..+.. ...++|++
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~ 251 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccE
Confidence 123445555566665554 4444445555556666666665555432222211 01235666
Q ss_pred EECCCCCCCCccCcc-------CCCCCCEEEecCCeecccCCC-CC------CCCCEEecCCCCCcCcchhhccccCccc
Q 003307 292 LDLSLNQLEGPVGSI-------TSATLKKVNLSSNKLSGSLPA-RV------GHCTIVDLSNNRLSGDLSRMQNWGNYVE 357 (832)
Q Consensus 292 L~L~~N~l~~~~~~~-------~~~~L~~L~L~~N~l~~~~p~-~l------~~l~~L~L~~N~l~~~~~~~~~~~~~L~ 357 (832)
|++++|++++.+|.. ...+|+.+++++|.+ .+|. .+ .+++.|++++|.+..... ....++|+
T Consensus 252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~ 327 (520)
T 2z7x_B 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFL 327 (520)
T ss_dssp EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCC
T ss_pred EEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCccc
Confidence 666666666544421 234556666666665 3331 11 346677777776654331 13445688
Q ss_pred EEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCC--CcccccCCCCCCCEEEccCCcccccCcc-cccCCCCCCeEecc
Q 003307 358 DIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEG--DLPAVLGTYPELKVIDLSLNHLNGFLLP-SFFTSTKLTDLNLS 434 (832)
Q Consensus 358 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls 434 (832)
+|++++|.+++.+|..+..+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|. .+..+++|+.|+|+
T Consensus 328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407 (520)
T ss_dssp EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence 88888888887777778888888888888888876 4556777888888888888888774443 46777888888888
Q ss_pred CCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCC-cc--CCCcEEE
Q 003307 435 GNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDG-LP--NGLKEFN 511 (832)
Q Consensus 435 ~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~--~~L~~l~ 511 (832)
+|++++.+|..+. .+|++|||++|+++ .+|..+..+++|+.|+|++|+++ .+|.. +. .+|+.|+
T Consensus 408 ~N~l~~~~~~~l~-----------~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 408 SNILTDTIFRCLP-----------PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIW 474 (520)
T ss_dssp SSCCCGGGGGSCC-----------TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCCCcchhhhhc-----------ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEE
Confidence 8888766654432 13788888888887 67777778888888888888887 45654 43 5788888
Q ss_pred cCCCccccccC
Q 003307 512 VSFNNLSGVVP 522 (832)
Q Consensus 512 ls~N~l~g~~p 522 (832)
+++|+++|..+
T Consensus 475 l~~N~~~c~c~ 485 (520)
T 2z7x_B 475 LHTNPWDCSCP 485 (520)
T ss_dssp CCSSCBCCCHH
T ss_pred CcCCCCcccCC
Confidence 88888877654
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-44 Score=418.38 Aligned_cols=448 Identities=21% Similarity=0.225 Sum_probs=335.4
Q ss_pred HHHHHHHHHhhhcCCCCCCcccccCccccCCCCCCCCCCCCc-cc-cCCCcEEEEEeCCCCCccccCcccccCCCCCCEE
Q 003307 18 QSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFG-IT-CTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNV 95 (832)
Q Consensus 18 ~~~~~~l~~~k~~~~~~~~~~~l~~w~~~~~~~~~c~~~w~g-v~-C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L 95 (832)
..+...-.++++-. ..-. -..|.... .+.+|.++|.. .. |..+...+|.++.. .+++.|
T Consensus 26 ~~~~~d~~aL~~~~-~~~~---~~~w~~~~-~~~~~~~~W~~~~~~c~w~~~~GV~C~~~--------------~~V~~L 86 (636)
T 4eco_A 26 AEYIKDYLALKEIW-DALN---GKNWSQQG-FGTQPGANWNFNKELDMWGAQPGVSLNSN--------------GRVTGL 86 (636)
T ss_dssp CHHHHHHHHHHHHH-HHTT---GGGCCCCC-------CCCCCSSCGGGTTCCTTEEECTT--------------CCEEEE
T ss_pred hhHHHHHHHHHHHH-HHcC---CCCcccCC-cCCccCCCCCCCCCcccccCCCCeEEcCC--------------CCEEEE
Confidence 34445566666554 1111 24686432 23344568963 22 33422244444322 368899
Q ss_pred EcCCCCCcccCC-CCCCCCCCCEEECCCCCCC------c---------------------------cCccccc-------
Q 003307 96 SVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFH------G---------------------------LIPSGIV------- 134 (832)
Q Consensus 96 ~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~------~---------------------------~~p~~~~------- 134 (832)
+|++|.+.|.+| ++++|++|++|+|++|.+. + .+|..+.
T Consensus 87 ~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~ 166 (636)
T 4eco_A 87 SLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166 (636)
T ss_dssp ECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHH
T ss_pred EecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHh
Confidence 999999999998 9999999999999999762 1 1111111
Q ss_pred ------------CCCCCCEEEcc--cccccccCCCCCCCCCCCCEeeCcCCCCCCc-----------------cchhhh-
Q 003307 135 ------------SLKNLMLLNIS--SNSFEGTFPSGFGGLGKLKYLDLRANRFGGD-----------------IMHLLS- 182 (832)
Q Consensus 135 ------------~l~~L~~L~Ls--~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----------------~~~~l~- 182 (832)
....++.+.+. +|++++ +|..|+++++|++|+|++|++++. +|..++
T Consensus 167 ~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~ 245 (636)
T 4eco_A 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW 245 (636)
T ss_dssp HHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG
T ss_pred hcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhh
Confidence 11123333332 689998 899999999999999999999986 899988
Q ss_pred -cCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCC-Cee-ccCCCCCCCCC------CCcCEEEccCCccccc
Q 003307 183 -QLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENS-LVG-ELFPHDGMPYF------DNLEVFDASNNHLVGA 253 (832)
Q Consensus 183 -~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~-~~~~~~~~~~l------~~L~~L~Ls~N~l~~~ 253 (832)
++++|++|+|++|.+.+.+|..++. +++|++|++++|+ +++ .+|.. +..+ ++|+.|++++|+++..
T Consensus 246 ~~l~~L~~L~L~~n~l~~~~p~~l~~---l~~L~~L~Ls~n~~l~~~~lp~~--~~~L~~~~~l~~L~~L~L~~n~l~~i 320 (636)
T 4eco_A 246 DNLKDLTDVEVYNCPNLTKLPTFLKA---LPEMQLINVACNRGISGEQLKDD--WQALADAPVGEKIQIIYIGYNNLKTF 320 (636)
T ss_dssp GGCTTCCEEEEECCTTCSSCCTTTTT---CSSCCEEECTTCTTSCHHHHHHH--HHHHHHSGGGGTCCEEECCSSCCSSC
T ss_pred cccCCCCEEEecCCcCCccChHHHhc---CCCCCEEECcCCCCCccccchHH--HHhhhccccCCCCCEEECCCCcCCcc
Confidence 9999999999999999999977665 5899999999998 988 77765 5555 8999999999999944
Q ss_pred CC--CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCc-cCCCC-CCEEEecCCeecccCCCCC
Q 003307 254 IP--SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGS-ITSAT-LKKVNLSSNKLSGSLPARV 329 (832)
Q Consensus 254 ~~--~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~-~~~~~-L~~L~L~~N~l~~~~p~~l 329 (832)
.. .+..+++|++|++++|+++|.+| .+ ..+++|+.|++++|+++..... ....+ |++|++++|+++ .+|..+
T Consensus 321 p~~~~l~~l~~L~~L~L~~N~l~g~ip-~~--~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~ 396 (636)
T 4eco_A 321 PVETSLQKMKKLGMLECLYNQLEGKLP-AF--GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIF 396 (636)
T ss_dssp CCHHHHTTCTTCCEEECCSCCCEEECC-CC--EEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCC
T ss_pred CchhhhccCCCCCEEeCcCCcCccchh-hh--CCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhh
Confidence 33 58999999999999999999999 55 5677888899888888732222 22245 777777777777 556544
Q ss_pred CCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCccccc-------CCCCCCEEEccCCcCCCCcccccCCCC
Q 003307 330 GHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTS-------QFLRLTSFKVSNNSLEGDLPAVLGTYP 402 (832)
Q Consensus 330 ~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 402 (832)
..+. ..+|+.|++++|.+++.+|..+. .+.+|++|+|++|+++...+..+..++
T Consensus 397 ~~~~-------------------l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~ 457 (636)
T 4eco_A 397 DAKS-------------------VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457 (636)
T ss_dssp CTTC-------------------SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTC
T ss_pred hhcc-------------------cCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCC
Confidence 3321 12588888888888888888887 778899999999999854445566788
Q ss_pred CCCEEEccCCcccccCcccccCCC-------CCCeEeccCCcccccCCcccc--cCCCCCcccCcccccEEEccCCcCcc
Q 003307 403 ELKVIDLSLNHLNGFLLPSFFTST-------KLTDLNLSGNNFSGPLPLQEI--QNNPSTGSTQNLSLTSLDLAYNSLSG 473 (832)
Q Consensus 403 ~L~~L~Ls~N~l~~~~~~~~~~l~-------~L~~L~Ls~N~l~~~~p~~~~--~~~~~~~~~~~~~L~~L~Ls~N~l~~ 473 (832)
+|++|+|++|+++...+..+.... +|+.|+|++|+++ .+|..+. ... +|+.|+|++|++++
T Consensus 458 ~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~---------~L~~L~Ls~N~l~~ 527 (636)
T 4eco_A 458 PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLP---------YLVGIDLSYNSFSK 527 (636)
T ss_dssp CCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCT---------TCCEEECCSSCCSS
T ss_pred CCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCC---------CcCEEECCCCCCCC
Confidence 999999999999854444444333 8999999999998 6776554 332 48999999999998
Q ss_pred cCChhhhcCCCCCEEeC------cCCcCcccCCCCcc--CCCcEEEcCCCccccccCccC
Q 003307 474 RLLPGISKFHNLVYLNL------SNNKFEGSIPDGLP--NGLKEFNVSFNNLSGVVPENL 525 (832)
Q Consensus 474 ~~p~~l~~l~~L~~L~L------s~N~l~g~ip~~~~--~~L~~l~ls~N~l~g~~p~~~ 525 (832)
+|..+..+++|+.|+| ++|++.+.+|..+. ++|+.|++++|++ +.+|..+
T Consensus 528 -ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~ 585 (636)
T 4eco_A 528 -FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI 585 (636)
T ss_dssp -CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred -cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH
Confidence 8889999999999999 56889999999886 7899999999999 7788764
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-42 Score=400.89 Aligned_cols=435 Identities=20% Similarity=0.238 Sum_probs=350.5
Q ss_pred CCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCccc
Q 003307 54 PRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSG 132 (832)
Q Consensus 54 ~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~ 132 (832)
.|.|.|+ |+ ++++++.. + |..+ .++|++|+|++|.+++..+ .|..+++|++|+|++|.+++..|..
T Consensus 3 ~C~~~~~-c~--------~~~~~l~~-i-p~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 69 (549)
T 2z81_A 3 SCDASGV-CD--------GRSRSFTS-I-PSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69 (549)
T ss_dssp EECTTSE-EE--------CTTSCCSS-C-CSCC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT
T ss_pred cCCCCce-EE--------CCCCcccc-c-cccC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh
Confidence 4689988 74 34444442 3 2233 2789999999999999888 8999999999999999999999999
Q ss_pred ccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCc-cchhhhcCCCCCEEECccCcCccccCCCCCCCCCC
Q 003307 133 IVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGD-IMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFI 211 (832)
Q Consensus 133 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l 211 (832)
|.++++|++|+|++|.+++..|..|+++++|++|+|++|++++. .|..++++++|++|++++|.+.+.++. ..+..+
T Consensus 70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~~~l 147 (549)
T 2z81_A 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR--IDFAGL 147 (549)
T ss_dssp TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT--TTTTTC
T ss_pred ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH--hhhhcc
Confidence 99999999999999999988887899999999999999999873 567899999999999999996555553 134457
Q ss_pred CCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCCCCC--ChhhhhhCCCC
Q 003307 212 SSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSL--PVALLQESSMM 288 (832)
Q Consensus 212 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~--p~~~~~~~~~~ 288 (832)
++|++|++++|.+++..+.. +..+++|+.|+++.|.+..... .+..+++|++|++++|++++.. |..+. ...++
T Consensus 148 ~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~ 224 (549)
T 2z81_A 148 TSLNELEIKALSLRNYQSQS--LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVD-EVSSP 224 (549)
T ss_dssp CEEEEEEEEETTCCEECTTT--TTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSC-CCCCC
T ss_pred cccCeeeccCCcccccChhh--hhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchh-hhhhc
Confidence 99999999999999888877 8999999999999999875433 3456899999999999998642 22221 35678
Q ss_pred CCEEECCCCCCCCccCc------cCCCCCCEEEecCCeeccc---------CCCCCCCCCEEecCCCCCcCcc-----hh
Q 003307 289 LSELDLSLNQLEGPVGS------ITSATLKKVNLSSNKLSGS---------LPARVGHCTIVDLSNNRLSGDL-----SR 348 (832)
Q Consensus 289 L~~L~L~~N~l~~~~~~------~~~~~L~~L~L~~N~l~~~---------~p~~l~~l~~L~L~~N~l~~~~-----~~ 348 (832)
|+.|++++|.+++..+. ....+|+.+++++|.+.+. .+..+++++.+++.++.+.... +.
T Consensus 225 L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~ 304 (549)
T 2z81_A 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304 (549)
T ss_dssp CCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCH
T ss_pred ccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchh
Confidence 99999999998764331 2346899999999998863 2356788999999999876532 23
Q ss_pred hccccCcccEEEcCCCcCCCCCcccc-cCCCCCCEEEccCCcCCCCcc---cccCCCCCCCEEEccCCcccccCc--ccc
Q 003307 349 MQNWGNYVEDIHLSSNFLTGMVPNQT-SQFLRLTSFKVSNNSLEGDLP---AVLGTYPELKVIDLSLNHLNGFLL--PSF 422 (832)
Q Consensus 349 ~~~~~~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~~--~~~ 422 (832)
.+....+|+.|++++|.++ .+|..+ ..+++|++|++++|++++.+| ..++.+++|++|++++|++++..+ ..+
T Consensus 305 ~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 383 (549)
T 2z81_A 305 VYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383 (549)
T ss_dssp HHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHG
T ss_pred hhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhh
Confidence 3344557999999999998 456555 689999999999999998764 347889999999999999988643 568
Q ss_pred cCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCC
Q 003307 423 FTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDG 502 (832)
Q Consensus 423 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 502 (832)
..+++|++|+|++|+++ .+|..+.... +|++|+|++|++++ +|..+ .++|+.|||++|++++.+ ..
T Consensus 384 ~~l~~L~~L~Ls~N~l~-~lp~~~~~~~---------~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~-~~ 449 (549)
T 2z81_A 384 LTLKNLTSLDISRNTFH-PMPDSCQWPE---------KMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS-LF 449 (549)
T ss_dssp GGCTTCCEEECTTCCCC-CCCSCCCCCT---------TCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC-CC
T ss_pred hcCCCCCEEECCCCCCc-cCChhhcccc---------cccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc-cc
Confidence 89999999999999998 4665443322 49999999999984 34333 368999999999999754 22
Q ss_pred ccCCCcEEEcCCCccccccCc
Q 003307 503 LPNGLKEFNVSFNNLSGVVPE 523 (832)
Q Consensus 503 ~~~~L~~l~ls~N~l~g~~p~ 523 (832)
.++|++|++++|+++ .+|.
T Consensus 450 -l~~L~~L~Ls~N~l~-~ip~ 468 (549)
T 2z81_A 450 -LPRLQELYISRNKLK-TLPD 468 (549)
T ss_dssp -CTTCCEEECCSSCCS-SCCC
T ss_pred -CChhcEEECCCCccC-cCCC
Confidence 268999999999998 5665
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-42 Score=398.74 Aligned_cols=421 Identities=19% Similarity=0.195 Sum_probs=267.6
Q ss_pred EEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEccc
Q 003307 68 TSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISS 146 (832)
Q Consensus 68 ~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 146 (832)
+.++++++++.+ +| ..+. ++|++|+|++|.+++..+ .|..+++|++|+|++|.|+++.|..|.++++|++|+|++
T Consensus 34 ~~l~ls~~~L~~-ip-~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLTH-VP-KDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCCS-CC-TTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCcc-CC-CCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 688999999886 53 3333 899999999999999887 899999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCEeeCcCCCCCCc-cchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCC-
Q 003307 147 NSFEGTFPSGFGGLGKLKYLDLRANRFGGD-IMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSL- 224 (832)
Q Consensus 147 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l- 224 (832)
|+|+ .+|.. .+++|++|+|++|++++. +|..|+++++|++|+|++|.+++ ..+..+..+ +|+.|++++|.+
T Consensus 110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L-~L~~L~L~~n~l~ 182 (562)
T 3a79_B 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHL-HLSCILLDLVSYH 182 (562)
T ss_dssp SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTS-CEEEEEEEESSCC
T ss_pred CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---Cchhhhhhc-eeeEEEeeccccc
Confidence 9999 46665 899999999999999874 46899999999999999999984 344455444 559999999999
Q ss_pred -eeccCCCCCCCCCC--CcCEEEccCCcccccCC--CccccccccEEEccccCCC-----CCCChhhhhhCCCCCCEEEC
Q 003307 225 -VGELFPHDGMPYFD--NLEVFDASNNHLVGAIP--SFNFVFSLRILRLGSNQLS-----GSLPVALLQESSMMLSELDL 294 (832)
Q Consensus 225 -~~~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~L~~N~l~-----~~~p~~~~~~~~~~L~~L~L 294 (832)
++..+.. +..+. .| .++++.|.+.+.++ .+..+++|+.|++++|+.. +.+ ..+ ...+.|+.+++
T Consensus 183 ~~~~~~~~--l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~~l--~~l~~L~~L~L 256 (562)
T 3a79_B 183 IKGGETES--LQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL-SEL--TRGPTLLNVTL 256 (562)
T ss_dssp CCSSSCCE--EEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH-HHH--HSCSSCEEEEE
T ss_pred ccccCccc--ccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHH-HHH--hccCcceEEEe
Confidence 6655544 54433 23 56888888887776 5677888999999988521 111 122 34566777777
Q ss_pred CCCCCCCc-----cCccCCCCCCEEEecCCeecccCCCCC-----CCCC-----------------------------EE
Q 003307 295 SLNQLEGP-----VGSITSATLKKVNLSSNKLSGSLPARV-----GHCT-----------------------------IV 335 (832)
Q Consensus 295 ~~N~l~~~-----~~~~~~~~L~~L~L~~N~l~~~~p~~l-----~~l~-----------------------------~L 335 (832)
.++.+.+. .+.....+|++|++++|+++|.+|..+ .+++ .|
T Consensus 257 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp EEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEE
T ss_pred cCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEE
Confidence 66665532 222333477788888888877777665 4444 33
Q ss_pred ecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCC--cccccCCCCCCCEEEccCCc
Q 003307 336 DLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGD--LPAVLGTYPELKVIDLSLNH 413 (832)
Q Consensus 336 ~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~ 413 (832)
++++|.+..... ....++|++|++++|.+++.+|..+..+++|++|++++|++++. +|..+..+++|++|++++|+
T Consensus 337 ~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 337 SISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp EEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred EccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 333333322110 01223455555555555544444455555555555555555432 23344445555555555555
Q ss_pred ccc-cCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcC
Q 003307 414 LNG-FLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSN 492 (832)
Q Consensus 414 l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 492 (832)
+++ ..+..+..+++|+.|+|++|++++.+|.... .+|++|+|++|+++ .+|..+..+++|+.|+|++
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-----------~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~ 482 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-----------PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVAS 482 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC-----------TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCS
T ss_pred CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc-----------CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCC
Confidence 544 2222344445555555555555443332211 02455555555554 3444444555555555555
Q ss_pred CcCcccCCCC-cc--CCCcEEEcCCCccccc
Q 003307 493 NKFEGSIPDG-LP--NGLKEFNVSFNNLSGV 520 (832)
Q Consensus 493 N~l~g~ip~~-~~--~~L~~l~ls~N~l~g~ 520 (832)
|+++ .+|.. +. ++|+.|++++|+++|.
T Consensus 483 N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 483 NQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp SCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 5555 23332 22 3445555555554443
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-41 Score=380.99 Aligned_cols=367 Identities=18% Similarity=0.159 Sum_probs=275.5
Q ss_pred CCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccC-cccccCCCCCCEEEcccccccccCCCCCCCCCCCCEee
Q 003307 90 KMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLI-PSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLD 167 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 167 (832)
++|++|||++|.+++..+ .|+++++|++|+|++|.+.+.+ +..|.++++|++|+|++|.+++..|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 789999999999999877 8999999999999999997554 67899999999999999999998899999999999999
Q ss_pred CcCCCCCCccchh--hhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCC--CCcCEE
Q 003307 168 LRANRFGGDIMHL--LSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYF--DNLEVF 243 (832)
Q Consensus 168 L~~N~l~~~~~~~--l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l--~~L~~L 243 (832)
|++|++++..+.. +..+++|++|+|++|++++..|..+ +..+++|++|++++|.+++..+.. +..+ .+|+.|
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~~~L~~L 185 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF--FLNMRRFHVLDLTFNKVKSICEED--LLNFQGKHFTLL 185 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGG--GGGCTTCCEEECTTCCBSCCCTTT--SGGGTTCEEEEE
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccc--cCCCCcccEEeCCCCcccccChhh--hhcccccccccc
Confidence 9999998866655 8999999999999999987666541 334688999999999998766655 5544 688889
Q ss_pred EccCCcccccCC-C--------ccccccccEEEccccCCCCCCChhhhhh-CCCCCCEEECCCCCCCCccCccCCCCCCE
Q 003307 244 DASNNHLVGAIP-S--------FNFVFSLRILRLGSNQLSGSLPVALLQE-SSMMLSELDLSLNQLEGPVGSITSATLKK 313 (832)
Q Consensus 244 ~Ls~N~l~~~~~-~--------~~~l~~L~~L~L~~N~l~~~~p~~~~~~-~~~~L~~L~L~~N~l~~~~~~~~~~~L~~ 313 (832)
++++|.+.+..+ . +..+++|++|++++|++++..|..+... ...+|+.|++++|.+.+...
T Consensus 186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------- 256 (455)
T 3v47_A 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------- 256 (455)
T ss_dssp ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT---------
T ss_pred ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc---------
Confidence 999998886554 2 2355788888888888887777666432 12456666666665443210
Q ss_pred EEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCC
Q 003307 314 VNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGD 393 (832)
Q Consensus 314 L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 393 (832)
..+.+.+..+..+..+ ...+|+.|++++|.+++..|..+..+++|++|+|++|++++.
T Consensus 257 ---~~~~~~~~~~~~~~~~-------------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 257 ---GHTNFKDPDNFTFKGL-------------------EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp ---TCCSSCCCCTTTTGGG-------------------TTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred ---chhhhccCcccccccc-------------------cccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 0111111111000000 113688888888888888888888888888888888888877
Q ss_pred cccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcc
Q 003307 394 LPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSG 473 (832)
Q Consensus 394 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 473 (832)
.|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..+.... +|++|+|++|++++
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---------~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP---------NLKELALDTNQLKS 385 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT---------TCCEEECCSSCCSC
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc---------cccEEECCCCcccc
Confidence 777888888888888888888887777888888888888888887766665444332 37777777777776
Q ss_pred cCChhhhcCCCCCEEeCcCCcCcccCC
Q 003307 474 RLLPGISKFHNLVYLNLSNNKFEGSIP 500 (832)
Q Consensus 474 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip 500 (832)
..+..+..+++|+.|+|++|++++.+|
T Consensus 386 ~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 386 VPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCHhHhccCCcccEEEccCCCcccCCC
Confidence 655566777777777777777777766
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=390.98 Aligned_cols=411 Identities=21% Similarity=0.242 Sum_probs=347.6
Q ss_pred CcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEE
Q 003307 65 GYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLN 143 (832)
Q Consensus 65 ~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 143 (832)
.+++.|+++++.+.+.. +..+.++++|++|+|++|++++..| .|+.+++|++|+|++|+|+. +|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELW-TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCC-HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccccC-hhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEe
Confidence 57899999999998754 5689999999999999999999888 89999999999999999995 5655 899999999
Q ss_pred cccccccc-cCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCC--CEEECccCcC--ccccCCCCCCCC---------
Q 003307 144 ISSNSFEG-TFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSV--VHVDLSNNQF--SGSLDLGLGDSS--------- 209 (832)
Q Consensus 144 Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L--~~L~Ls~N~l--~~~~~~~~~~~~--------- 209 (832)
|++|.+++ .+|..|+++++|++|+|++|++++ ..+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence 99999997 478999999999999999999986 457778888 9999999999 777777666543
Q ss_pred --------------CCCCccEEECCCCC-------CeeccCCCCCCCCCCCcCEEEccCCcccccCC-C---cccccccc
Q 003307 210 --------------FISSIQYLNISENS-------LVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-S---FNFVFSLR 264 (832)
Q Consensus 210 --------------~l~~L~~L~L~~N~-------l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~---~~~l~~L~ 264 (832)
.+++|+.|++++|. +.+.++ . +..+++|+.|++++|.+++..+ . ....++|+
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~--l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-K--LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-G--GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchh-h--hccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 47889999999987 666555 3 7889999999999999876433 1 12246899
Q ss_pred EEEccccCCCCCCChhhhh---hCCCCCCEEECCCCCCCCccC--cc----CCCCCCEEEecCCeecccC-CCCCCCCCE
Q 003307 265 ILRLGSNQLSGSLPVALLQ---ESSMMLSELDLSLNQLEGPVG--SI----TSATLKKVNLSSNKLSGSL-PARVGHCTI 334 (832)
Q Consensus 265 ~L~L~~N~l~~~~p~~~~~---~~~~~L~~L~L~~N~l~~~~~--~~----~~~~L~~L~L~~N~l~~~~-p~~l~~l~~ 334 (832)
+|++++|+++|.+|..++. ..++.|+.++++.|.+ .+| .. ...+|+.|++++|.+.... +..+.+|++
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~ 328 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLH 328 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCE
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccE
Confidence 9999999999999987632 3577899999999998 233 11 1257999999999998654 367889999
Q ss_pred EecCCCCCcCcchhhccccCcccEEEcCCCcCCC--CCcccccCCCCCCEEEccCCcCCCCccc-ccCCCCCCCEEEccC
Q 003307 335 VDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTG--MVPNQTSQFLRLTSFKVSNNSLEGDLPA-VLGTYPELKVIDLSL 411 (832)
Q Consensus 335 L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~ 411 (832)
|++++|++++..+..+...++|+.|+|++|.+++ .+|..+..+++|++|++++|++++.+|. .+..+++|+.|++++
T Consensus 329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408 (520)
T ss_dssp EECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred EEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence 9999999999777777777789999999999997 5668899999999999999999986665 488899999999999
Q ss_pred CcccccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChh-hhcCCCCCEEeC
Q 003307 412 NHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPG-ISKFHNLVYLNL 490 (832)
Q Consensus 412 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L 490 (832)
|++++..|..+. ++|+.|+|++|+++ .+|....... +|++|+|++|+++. +|.. +..+++|+.|+|
T Consensus 409 N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~---------~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 409 NILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLE---------ALQELNVASNQLKS-VPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp SCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCT---------TCCEEECCSSCCCC-CCTTTTTTCTTCCEEEC
T ss_pred CCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCC---------CCCEEECCCCcCCc-cCHHHhccCCcccEEEC
Confidence 999988777664 79999999999998 7777665443 49999999999995 5554 999999999999
Q ss_pred cCCcCcccCC
Q 003307 491 SNNKFEGSIP 500 (832)
Q Consensus 491 s~N~l~g~ip 500 (832)
++|++++.++
T Consensus 476 ~~N~~~c~c~ 485 (520)
T 2z7x_B 476 HTNPWDCSCP 485 (520)
T ss_dssp CSSCBCCCHH
T ss_pred cCCCCcccCC
Confidence 9999998765
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-40 Score=387.06 Aligned_cols=458 Identities=20% Similarity=0.150 Sum_probs=334.7
Q ss_pred CcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEE
Q 003307 65 GYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLN 143 (832)
Q Consensus 65 ~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 143 (832)
..++.|+|+++.+++. ++..|.++++|++|||++|+|++..+ .|.++++|++|+|++|+|+++.+..|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 3688899999888754 35678899999999999999998877 789999999999999999988888899999999999
Q ss_pred cccccccccCCCCCCCCCCCCEeeCcCCCCCCc-cchhhhcCCCCCEEECccCcCccccCCCCCCCCCCC-CccEEECCC
Q 003307 144 ISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGD-IMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFIS-SIQYLNISE 221 (832)
Q Consensus 144 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~-~L~~L~L~~ 221 (832)
|++|+|++..+..|+++++|++|+|++|.+++. .|..++.+++|++|+|++|++++..+..+..+..++ .+..++++.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 999999987777899999999999999998764 578888899999999999999876665554433332 234566777
Q ss_pred CCCeeccCCCCCCCCCCCcCEEEccCCccc--------------------------------------------------
Q 003307 222 NSLVGELFPHDGMPYFDNLEVFDASNNHLV-------------------------------------------------- 251 (832)
Q Consensus 222 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-------------------------------------------------- 251 (832)
|.+....+.. + ....++.+++.+|...
T Consensus 211 n~l~~i~~~~--~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~ 287 (635)
T 4g8a_A 211 NPMNFIQPGA--F-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 287 (635)
T ss_dssp CCCCEECTTT--T-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEE
T ss_pred CcccccCccc--c-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhh
Confidence 7665432221 1 1122333333333211
Q ss_pred ---------ccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeec
Q 003307 252 ---------GAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLS 322 (832)
Q Consensus 252 ---------~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~ 322 (832)
+....+....+++.+++.+|.+....+ + .....++.|++.+|.+.+... .....|+.+++..|.+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~--~~~~~L~~L~l~~~~~~~~~~-~~l~~L~~l~l~~n~~~ 362 (635)
T 4g8a_A 288 LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--F--SYNFGWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGG 362 (635)
T ss_dssp EECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--G--GSCCCCSEEEEESCEESSCCC-CBCTTCCEEEEESCCSC
T ss_pred hhhhcccccchhhhhhhhcccccccccccccccccc--c--ccchhhhhhhcccccccCcCc-ccchhhhhcccccccCC
Confidence 011123344566667777766653222 2 345678999999998875433 34467889999998876
Q ss_pred ccCCC-CCCCCCEEecCCCCCcCc--chhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcc-ccc
Q 003307 323 GSLPA-RVGHCTIVDLSNNRLSGD--LSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLP-AVL 398 (832)
Q Consensus 323 ~~~p~-~l~~l~~L~L~~N~l~~~--~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~ 398 (832)
..... .+.+++.+++++|.+... .+.......+|+.+++..|.+... +..+..+++|+.++++.|.+....+ ..+
T Consensus 363 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 441 (635)
T 4g8a_A 363 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVF 441 (635)
T ss_dssp CBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTT
T ss_pred CCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhcccccccccccc
Confidence 54432 467888999999988643 233333445688999998887754 4567788899999998887765543 567
Q ss_pred CCCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcccc-cCCcccccCCCCCcccCcccccEEEccCCcCcccCCh
Q 003307 399 GTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSG-PLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLP 477 (832)
Q Consensus 399 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~ 477 (832)
..+++++.++++.|.+.+..+..+..++.|+.|+|++|++.. .+|..+.... +|++|||++|+|++.+|.
T Consensus 442 ~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~---------~L~~L~Ls~N~L~~l~~~ 512 (635)
T 4g8a_A 442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR---------NLTFLDLSQCQLEQLSPT 512 (635)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT---------TCCEEECTTSCCCEECTT
T ss_pred ccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc---------ccCEEECCCCccCCcChH
Confidence 788899999999999998888888888999999999987543 3444333332 488999999999988888
Q ss_pred hhhcCCCCCEEeCcCCcCcccCCCCcc--CCCcEEEcCCCccccccCccCCCCCC-CC--CCCCCCCCC
Q 003307 478 GISKFHNLVYLNLSNNKFEGSIPDGLP--NGLKEFNVSFNNLSGVVPENLRNFPD-SA--FHPGNSLLT 541 (832)
Q Consensus 478 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~--~~L~~l~ls~N~l~g~~p~~~~~~~~-~~--~~~~n~~~~ 541 (832)
.|.++++|+.|+|++|+|++..|..+. ++|++|++++|+|++..|..+..++. .. ...+|+..|
T Consensus 513 ~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 513 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred HHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 899999999999999999877776665 68899999999999988888766532 11 123677666
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-41 Score=402.42 Aligned_cols=372 Identities=18% Similarity=0.208 Sum_probs=310.8
Q ss_pred CCCCcccCC-CCCCCCCCCEEECCCCCCCc-----------------cCccccc--CCCCCCEEEcccccccccCCCCCC
Q 003307 99 NNQLMGNIT-DIGSIQSLEFLDLSHNLFHG-----------------LIPSGIV--SLKNLMLLNISSNSFEGTFPSGFG 158 (832)
Q Consensus 99 ~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-----------------~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~ 158 (832)
.|++++ +| .|+++++|++|+|++|.|++ .+|..++ ++++|++|+|++|.+.+.+|..|+
T Consensus 434 ~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 434 TNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred cCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 388888 66 89999999999999999998 3888887 999999999999999999999999
Q ss_pred CCCCCCEeeCcCCC-CCC-ccchhhhcCC-------CCCEEECccCcCccccCC--CCCCCCCCCCccEEECCCCCCeec
Q 003307 159 GLGKLKYLDLRANR-FGG-DIMHLLSQLG-------SVVHVDLSNNQFSGSLDL--GLGDSSFISSIQYLNISENSLVGE 227 (832)
Q Consensus 159 ~l~~L~~L~L~~N~-l~~-~~~~~l~~l~-------~L~~L~Ls~N~l~~~~~~--~~~~~~~l~~L~~L~L~~N~l~~~ 227 (832)
++++|++|+|++|+ +++ .+|..++.++ +|++|+|++|+++ .+|. .++ .+++|+.|+|++|.++ .
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~---~L~~L~~L~Ls~N~l~-~ 587 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ---KMVKLGLLDCVHNKVR-H 587 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT---TCTTCCEEECTTSCCC-B
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh---cCCCCCEEECCCCCcc-c
Confidence 99999999999998 998 8888777766 9999999999999 6776 554 4589999999999998 6
Q ss_pred cCCCCCCCCCCCcCEEEccCCcccccCC-Ccccccc-ccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCc
Q 003307 228 LFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFS-LRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGS 305 (832)
Q Consensus 228 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~-L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~ 305 (832)
+| . +..+++|+.|++++|.++ .+| .+..+++ |+.|+|++|+++ .+|..+.....++|+.|++++|++.+.++.
T Consensus 588 lp-~--~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 588 LE-A--FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp CC-C--CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred ch-h--hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcccc
Confidence 66 4 899999999999999999 566 8899999 999999999999 788766433345599999999999987663
Q ss_pred cC-------CCCCCEEEecCCeecccCCC----CCCCCCEEecCCCCCcCcchhhcccc-------CcccEEEcCCCcCC
Q 003307 306 IT-------SATLKKVNLSSNKLSGSLPA----RVGHCTIVDLSNNRLSGDLSRMQNWG-------NYVEDIHLSSNFLT 367 (832)
Q Consensus 306 ~~-------~~~L~~L~L~~N~l~~~~p~----~l~~l~~L~L~~N~l~~~~~~~~~~~-------~~L~~L~Ls~N~l~ 367 (832)
.. ..+|+.|+|++|+++ .+|. .+.+|+.|+|++|+++......+... ++|+.|+|++|.|+
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~ 741 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC
T ss_pred chhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc
Confidence 32 248999999999999 5664 45789999999999996666555433 27999999999999
Q ss_pred CCCccccc--CCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccC------CcccccCcccccCCCCCCeEeccCCccc
Q 003307 368 GMVPNQTS--QFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSL------NHLNGFLLPSFFTSTKLTDLNLSGNNFS 439 (832)
Q Consensus 368 ~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 439 (832)
.+|..+. .+++|+.|+|++|+|++ +|..+..+++|+.|+|++ |++.+.+|..|..+++|+.|+|++|++
T Consensus 742 -~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L- 818 (876)
T 4ecn_A 742 -SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI- 818 (876)
T ss_dssp -CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred -cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-
Confidence 6788887 99999999999999997 798999999999999977 777788888888888888888888888
Q ss_pred ccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCc
Q 003307 440 GPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFE 496 (832)
Q Consensus 440 ~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 496 (832)
+.+|..+.. +|+.|||++|++....+..+.....+..+.|.+|++.
T Consensus 819 ~~Ip~~l~~-----------~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 819 RKVDEKLTP-----------QLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp CBCCSCCCS-----------SSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred CccCHhhcC-----------CCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 667755331 3777888888777666665555555555666666554
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=384.80 Aligned_cols=441 Identities=18% Similarity=0.140 Sum_probs=347.2
Q ss_pred EEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccc
Q 003307 69 SIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSN 147 (832)
Q Consensus 69 ~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 147 (832)
.+++++.+|+. + |..+. +++++|||++|+|++..+ .|.++++|++|||++|+|+++.|.+|.++++|++|+|++|
T Consensus 35 ~~~c~~~~l~~-v-P~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 35 TYQCMELNFYK-I-PDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp EEECTTSCCSS-C-CSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCCcCc-c-CCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 35677777663 3 22221 479999999999999888 8999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccc-cCCCCCCCCCCCCccEEECCCCCCee
Q 003307 148 SFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGS-LDLGLGDSSFISSIQYLNISENSLVG 226 (832)
Q Consensus 148 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~~~~l~~L~~L~L~~N~l~~ 226 (832)
+|++..+..|.++++|++|+|++|++++..+..|+++++|++|+|++|.+++. +|..+ ..+++|++|++++|++++
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~---~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF---SNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG---GGCTTCCEEECCSSCCCE
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhh---ccchhhhhhcccCccccc
Confidence 99988888999999999999999999998888999999999999999999753 34333 346899999999999987
Q ss_pred ccCCCCCCCCCCC----cCEEEccCCcccccCCCccccccccEEEccccCCCCCCChhhhh-------------------
Q 003307 227 ELFPHDGMPYFDN----LEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQ------------------- 283 (832)
Q Consensus 227 ~~~~~~~~~~l~~----L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~------------------- 283 (832)
..+.. +..+.+ +..++++.|.+....+.......++.+++.+|.....++...+.
T Consensus 188 ~~~~~--l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~ 265 (635)
T 4g8a_A 188 IYCTD--LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 265 (635)
T ss_dssp ECGGG--GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred ccccc--ccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccc
Confidence 65544 544433 34789999999877765445556677777776554222111110
Q ss_pred -------------------------------------hCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCC
Q 003307 284 -------------------------------------ESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLP 326 (832)
Q Consensus 284 -------------------------------------~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p 326 (832)
.....++.+++..+.+...........++.|++.+|.+.+..+
T Consensus 266 ~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 345 (635)
T 4g8a_A 266 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 345 (635)
T ss_dssp CCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCC
T ss_pred ccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCc
Confidence 1122344555555555444444445578889999998887777
Q ss_pred CCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCC--CCcccccCCCCCCEEEccCCcCCCCcccccCCCCCC
Q 003307 327 ARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTG--MVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPEL 404 (832)
Q Consensus 327 ~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 404 (832)
..+..++.+++..|.+....... ..++|+.|++++|.+.. ..+..+..+.+|++|+++.|.+.. .+..+..+++|
T Consensus 346 ~~l~~L~~l~l~~n~~~~~~~~~--~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L 422 (635)
T 4g8a_A 346 LKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQL 422 (635)
T ss_dssp CBCTTCCEEEEESCCSCCBCCCC--BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTC
T ss_pred ccchhhhhcccccccCCCCcccc--cccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccc
Confidence 77888888999888877654322 34579999999999864 456677788999999999999874 56678889999
Q ss_pred CEEEccCCcccccCc-ccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcC-cccCChhhhcC
Q 003307 405 KVIDLSLNHLNGFLL-PSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSL-SGRLLPGISKF 482 (832)
Q Consensus 405 ~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l-~~~~p~~l~~l 482 (832)
+.++++.|.+....+ ..|..+.+++.++++.|.+++..+....... +|+.|+|++|.+ .+.+|..|..+
T Consensus 423 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~---------~L~~L~Ls~N~~~~~~~~~~~~~l 493 (635)
T 4g8a_A 423 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS---------SLEVLKMAGNSFQENFLPDIFTEL 493 (635)
T ss_dssp CEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT---------TCCEEECTTCEEGGGEECSCCTTC
T ss_pred cchhhhhccccccccccccccccccccccccccccccccccccccch---------hhhhhhhhhcccccccCchhhhhc
Confidence 999999998876654 4578899999999999999987765544333 499999999985 45678889999
Q ss_pred CCCCEEeCcCCcCcccCCCCcc--CCCcEEEcCCCccccccCccCCCCCC
Q 003307 483 HNLVYLNLSNNKFEGSIPDGLP--NGLKEFNVSFNNLSGVVPENLRNFPD 530 (832)
Q Consensus 483 ~~L~~L~Ls~N~l~g~ip~~~~--~~L~~l~ls~N~l~g~~p~~~~~~~~ 530 (832)
++|+.|||++|+|++.+|..+. .+|++|++++|+|++..|..|..++.
T Consensus 494 ~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 543 (635)
T 4g8a_A 494 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 543 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTT
T ss_pred cccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCC
Confidence 9999999999999998888876 78999999999999998887765543
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=364.05 Aligned_cols=392 Identities=22% Similarity=0.230 Sum_probs=258.3
Q ss_pred CcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCC-------------CEEECCCCCCCccCc
Q 003307 65 GYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSL-------------EFLDLSHNLFHGLIP 130 (832)
Q Consensus 65 ~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L-------------~~L~Ls~N~l~~~~p 130 (832)
.+++.++++++++ |.+ |+.++++++|++|++++|.+.|.+| .++.+.+| ++|++++|.+++. |
T Consensus 11 ~~L~~L~l~~n~l-~~i-P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p 87 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-P 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-C
T ss_pred ccchhhhcccCch-hhC-ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-C
Confidence 4578888999888 788 5679999999999999999998888 88888765 9999999999874 3
Q ss_pred ccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCC
Q 003307 131 SGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSF 210 (832)
Q Consensus 131 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 210 (832)
. -.++|++|++++|.+++ +|.. +++|++|++++|++++... . .++|++|++++|++++ +| . +..
T Consensus 88 ~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~-~---~~~L~~L~L~~n~l~~-lp-~---~~~ 151 (454)
T 1jl5_A 88 E---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD-L---PPLLEYLGVSNNQLEK-LP-E---LQN 151 (454)
T ss_dssp S---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS-C---CTTCCEEECCSSCCSS-CC-C---CTT
T ss_pred C---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC-C---CCCCCEEECcCCCCCC-Cc-c---cCC
Confidence 3 24789999999999997 6654 3789999999999886322 1 2689999999999985 55 2 556
Q ss_pred CCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCC
Q 003307 211 ISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLS 290 (832)
Q Consensus 211 l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~ 290 (832)
+++|++|++++|++++ ++.. ..+|+.|++++|++++ +|.+..+++|+.|++++|++++ +|.. ..+|+
T Consensus 152 l~~L~~L~l~~N~l~~-lp~~-----~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~-----~~~L~ 218 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK-LPDL-----PPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPDL-----PLSLE 218 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCC-----CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCC-----CTTCC
T ss_pred CCCCCEEECCCCcCcc-cCCC-----cccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCCC-----cCccc
Confidence 7899999999999875 3332 3589999999999987 5678889999999999999985 5532 24799
Q ss_pred EEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCC
Q 003307 291 ELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMV 370 (832)
Q Consensus 291 ~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 370 (832)
+|++++|.++.........+|++|++++|++++ +|..+.+++.|++++|++++.... ..+|+.|++++|.+++.
T Consensus 219 ~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~----~~~L~~L~ls~N~l~~l- 292 (454)
T 1jl5_A 219 SIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPEL----PQSLTFLDVSENIFSGL- 292 (454)
T ss_dssp EEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSEE-
T ss_pred EEECcCCcCCcccccCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcc----cCcCCEEECcCCccCcc-
Confidence 999999998854433445689999999999985 666678889999999998874432 24789999999998863
Q ss_pred cccccCCCCCCEEEccCCcCCCCcccccCCC-CCCCEEEccCCcccccCcccccCCCCCCeEeccCCcccccCCcccccC
Q 003307 371 PNQTSQFLRLTSFKVSNNSLEGDLPAVLGTY-PELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQN 449 (832)
Q Consensus 371 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 449 (832)
|.. .++|++|++++|++++ ++ .+ ++|++|++++|++++ +|.. +++|+.|++++|++++ +|. . .
T Consensus 293 ~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~-~--l 356 (454)
T 1jl5_A 293 SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE-L--P 356 (454)
T ss_dssp SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC-C--C
T ss_pred cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc-h--h
Confidence 211 2678999999999885 22 23 488999999999987 4443 5789999999998884 554 1 1
Q ss_pred CCCCcccCcccccEEEccCCcCcc--cCChhhhcCCCCCEEeCcCCcCcccCCCCccCCCcEEEcCCCcccc--ccCccC
Q 003307 450 NPSTGSTQNLSLTSLDLAYNSLSG--RLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSG--VVPENL 525 (832)
Q Consensus 450 ~~~~~~~~~~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~L~~l~ls~N~l~g--~~p~~~ 525 (832)
.+|++|++++|++++ .+|..+..+ +.|.+.|.+|.. ..+|+.|++++|++++ .+|..+
T Consensus 357 ---------~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~-~~~L~~L~ls~N~l~~~~~iP~sl 418 (454)
T 1jl5_A 357 ---------QNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL-PQNLKQLHVETNPLREFPDIPESV 418 (454)
T ss_dssp ---------TTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC---------------------------------
T ss_pred ---------hhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc-cCcCCEEECCCCcCCccccchhhH
Confidence 148899999999988 677665543 346666666653 3567777777777776 667665
Q ss_pred CCC
Q 003307 526 RNF 528 (832)
Q Consensus 526 ~~~ 528 (832)
..+
T Consensus 419 ~~L 421 (454)
T 1jl5_A 419 EDL 421 (454)
T ss_dssp ---
T ss_pred hhe
Confidence 444
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-39 Score=362.17 Aligned_cols=387 Identities=19% Similarity=0.182 Sum_probs=266.7
Q ss_pred CEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccC-CCCCCCCCCCCEeeCcCC
Q 003307 93 CNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTF-PSGFGGLGKLKYLDLRAN 171 (832)
Q Consensus 93 ~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N 171 (832)
+.++.+++.++..+. + .++|++|+|++|.|++..|..|.++++|++|+|++|.+.+.+ +..|.++++|++|+|++|
T Consensus 13 ~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 457777777775443 2 378999999999999888889999999999999999987544 667899999999999999
Q ss_pred CCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCccc
Q 003307 172 RFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLV 251 (832)
Q Consensus 172 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 251 (832)
++++..|..|+++++|++|+|++|.+++.++.. ..+..+++|++|+|++|.+++..+.. .+..+++|+.|++++|.++
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG-NFFKPLTSLEMLVLRDNNIKKIQPAS-FFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHS-STTTTCTTCCEEECCSSBCCSCCCCG-GGGGCTTCCEEECTTCCBS
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCc-ccccCcccCCEEECCCCccCccCccc-ccCCCCcccEEeCCCCccc
Confidence 998888888999999999999999888644332 11233456666666666655433221 1344555555555555555
Q ss_pred ccCC-Ccccc--ccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCC
Q 003307 252 GAIP-SFNFV--FSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPAR 328 (832)
Q Consensus 252 ~~~~-~~~~l--~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~ 328 (832)
+..+ .+..+ .+|+.|++++|.+.+..+..+...... ......+|++|++++|++++..|..
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~----------------~~~~~~~L~~L~Ls~n~l~~~~~~~ 231 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG----------------NPFKNTSITTLDLSGNGFKESMAKR 231 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHC----------------CTTTTCEEEEEECTTSCCCHHHHHH
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccc----------------cccccceeeeEecCCCcccccchhh
Confidence 5444 33333 345555555555543222111000000 0001123444444444444333321
Q ss_pred C------CCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccC--CCCCCEEEccCCcCCCCcccccCC
Q 003307 329 V------GHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQ--FLRLTSFKVSNNSLEGDLPAVLGT 400 (832)
Q Consensus 329 l------~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~--l~~L~~L~Ls~N~l~~~~p~~~~~ 400 (832)
+ .+++.|++++|.+.+.. +..+.+.+..+..+.. .++|++|++++|.+++..|..+..
T Consensus 232 ~~~~~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 297 (455)
T 3v47_A 232 FFDAIAGTKIQSLILSNSYNMGSS--------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH 297 (455)
T ss_dssp HHHHTTTCCEEEEECTTCTTTSCC--------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT
T ss_pred hhccccccceeeEeeccccccccc--------------cchhhhccCcccccccccccCceEEEecCccccccchhhccc
Confidence 1 23333444433332210 1112222223333333 368999999999999999999999
Q ss_pred CCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhh
Q 003307 401 YPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGIS 480 (832)
Q Consensus 401 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~ 480 (832)
+++|++|++++|++++..+..|..+++|++|+|++|++++..|..+.... +|++|+|++|++++..|..+.
T Consensus 298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---------~L~~L~Ls~N~l~~~~~~~~~ 368 (455)
T 3v47_A 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD---------KLEVLDLSYNHIRALGDQSFL 368 (455)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT---------TCCEEECCSSCCCEECTTTTT
T ss_pred CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc---------cCCEEECCCCcccccChhhcc
Confidence 99999999999999999999999999999999999999877666554443 499999999999999999999
Q ss_pred cCCCCCEEeCcCCcCcccCCCCcc--CCCcEEEcCCCccccccCc
Q 003307 481 KFHNLVYLNLSNNKFEGSIPDGLP--NGLKEFNVSFNNLSGVVPE 523 (832)
Q Consensus 481 ~l~~L~~L~Ls~N~l~g~ip~~~~--~~L~~l~ls~N~l~g~~p~ 523 (832)
.+++|++|+|++|++++..+..+. ++|+.|++++|+++|.+|.
T Consensus 369 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 369 GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999999999999975554444 7899999999999999884
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=378.85 Aligned_cols=413 Identities=19% Similarity=0.216 Sum_probs=313.5
Q ss_pred CCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEE
Q 003307 64 NGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLL 142 (832)
Q Consensus 64 ~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 142 (832)
...++.|+++++.+.+.. +..+.++++|++|+|++|++++..| .|..+++|++|||++|.|+. +|.. .+++|++|
T Consensus 51 ~~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L 126 (562)
T 3a79_B 51 PPRTKALSLSQNSISELR-MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC--PMASLRHL 126 (562)
T ss_dssp CTTCCEEECCSSCCCCCC-GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC--CCTTCSEE
T ss_pred CCCcCEEECCCCCccccC-hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc--ccccCCEE
Confidence 357899999999998754 5789999999999999999999988 89999999999999999995 4554 89999999
Q ss_pred Eccccccccc-CCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCC--CEEECccCcC--ccccCCCCCCCCCCCCccEE
Q 003307 143 NISSNSFEGT-FPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSV--VHVDLSNNQF--SGSLDLGLGDSSFISSIQYL 217 (832)
Q Consensus 143 ~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L--~~L~Ls~N~l--~~~~~~~~~~~~~l~~L~~L 217 (832)
+|++|++++. +|..|+++++|++|+|++|++++. .+..+++| ++|++++|.+ ++..|..+..+.. ..+ .+
T Consensus 127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~-~~l-~l 201 (562)
T 3a79_B 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT-TVL-HL 201 (562)
T ss_dssp ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE-EEE-EE
T ss_pred ECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCc-ceE-EE
Confidence 9999999974 468999999999999999999864 45555555 9999999999 7776666554321 122 44
Q ss_pred ECCCCCCeeccCCCCCCCCCCCcCEEEccCCc-----ccccCCCccc---------------------------cccccE
Q 003307 218 NISENSLVGELFPHDGMPYFDNLEVFDASNNH-----LVGAIPSFNF---------------------------VFSLRI 265 (832)
Q Consensus 218 ~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-----l~~~~~~~~~---------------------------l~~L~~ 265 (832)
++++|.+.+.++.. .+..+++|+.+++++|. +.+.++.+.. ..+|++
T Consensus 202 ~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~ 280 (562)
T 3a79_B 202 VFHPNSLFSVQVNM-SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY 280 (562)
T ss_dssp EECSSSCCCCCCEE-EESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEE
T ss_pred EecCccchhhhhhh-cccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccE
Confidence 56666655433321 23455566666666553 1111111222 236777
Q ss_pred EEccccCCCCCCChhhhhh---CCCCCCEEECCCCCCCCccCc------cCCCCCCEEEecCCeecccCC-CCCCCCCEE
Q 003307 266 LRLGSNQLSGSLPVALLQE---SSMMLSELDLSLNQLEGPVGS------ITSATLKKVNLSSNKLSGSLP-ARVGHCTIV 335 (832)
Q Consensus 266 L~L~~N~l~~~~p~~~~~~---~~~~L~~L~L~~N~l~~~~~~------~~~~~L~~L~L~~N~l~~~~p-~~l~~l~~L 335 (832)
|++++|+++|.+|..++.. .+..|+.+++..|.+ .+|. ....+|+.|++++|.+..... ..+.+++.|
T Consensus 281 L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L 358 (562)
T 3a79_B 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL 358 (562)
T ss_dssp EEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEE
T ss_pred EEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEE
Confidence 7777777777776655322 223333344444444 1110 112469999999999875443 677899999
Q ss_pred ecCCCCCcCcchhhccccCcccEEEcCCCcCCCCC--cccccCCCCCCEEEccCCcCCCCccc-ccCCCCCCCEEEccCC
Q 003307 336 DLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMV--PNQTSQFLRLTSFKVSNNSLEGDLPA-VLGTYPELKVIDLSLN 412 (832)
Q Consensus 336 ~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N 412 (832)
++++|++++.++..+...++|+.|+|++|.+++.. |..+..+++|++|++++|++++.+|. .+..+++|++|++++|
T Consensus 359 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n 438 (562)
T 3a79_B 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438 (562)
T ss_dssp ECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred ECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC
Confidence 99999999987777777778999999999999743 56789999999999999999985554 5888999999999999
Q ss_pred cccccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChh-hhcCCCCCEEeCc
Q 003307 413 HLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPG-ISKFHNLVYLNLS 491 (832)
Q Consensus 413 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls 491 (832)
++++..|..+. ++|+.|+|++|+++ .+|....... +|++|+|++|+|+. +|.. +..+++|+.|+|+
T Consensus 439 ~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~---------~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 439 MLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQ---------ALQELNVASNQLKS-VPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp CCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSC---------CCSEEECCSSCCCC-CCTTSTTTCTTCCCEECC
T ss_pred CCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCC---------CCCEEECCCCCCCC-CCHHHHhcCCCCCEEEec
Confidence 99987766554 79999999999998 5666554333 49999999999995 5555 9999999999999
Q ss_pred CCcCcccCCC
Q 003307 492 NNKFEGSIPD 501 (832)
Q Consensus 492 ~N~l~g~ip~ 501 (832)
+|+++|.+|.
T Consensus 506 ~N~~~c~c~~ 515 (562)
T 3a79_B 506 DNPWDCTCPG 515 (562)
T ss_dssp SCCBCCCHHH
T ss_pred CCCcCCCcch
Confidence 9999987663
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-38 Score=352.64 Aligned_cols=361 Identities=20% Similarity=0.190 Sum_probs=290.9
Q ss_pred cccccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCC
Q 003307 83 FPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGK 162 (832)
Q Consensus 83 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 162 (832)
+..++++++|++|++++|.+++. |.++.+++|++|+|++|.|+++ | ++.+++|++|+|++|.|++. + |+++++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~ 107 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDM-TGIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTK 107 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCC-TTGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred ccChhHcCCCCEEEccCCCcccC-hhhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence 34677889999999999999875 5788999999999999999976 3 88999999999999999975 3 889999
Q ss_pred CCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCE
Q 003307 163 LKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEV 242 (832)
Q Consensus 163 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 242 (832)
|++|+|++|++++. + ++.+++|++|++++|++++. + +..+++|++|++++|...+.+ . +..+++|+.
T Consensus 108 L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~-----l~~l~~L~~L~l~~n~~~~~~--~--~~~l~~L~~ 174 (457)
T 3bz5_A 108 LTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D-----VSHNTQLTELDCHLNKKITKL--D--VTPQTQLTT 174 (457)
T ss_dssp CCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C-----CTTCTTCCEEECTTCSCCCCC--C--CTTCTTCCE
T ss_pred CCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c-----cccCCcCCEEECCCCCccccc--c--cccCCcCCE
Confidence 99999999999875 3 88999999999999999863 2 445689999999999765554 2 778899999
Q ss_pred EEccCCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeec
Q 003307 243 FDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLS 322 (832)
Q Consensus 243 L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~ 322 (832)
|++++|++++. | +..+++|+.|++++|++++. + + ..+++|+.|++++|++++ +|....++|+.|++++|+++
T Consensus 175 L~ls~n~l~~l-~-l~~l~~L~~L~l~~N~l~~~-~--l--~~l~~L~~L~Ls~N~l~~-ip~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 175 LDCSFNKITEL-D-VSQNKLLNRLNCDTNNITKL-D--L--NQNIQLTFLDCSSNKLTE-IDVTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp EECCSSCCCCC-C-CTTCTTCCEEECCSSCCSCC-C--C--TTCTTCSEEECCSSCCSC-CCCTTCTTCSEEECCSSCCS
T ss_pred EECCCCcccee-c-cccCCCCCEEECcCCcCCee-c--c--ccCCCCCEEECcCCcccc-cCccccCCCCEEEeeCCcCC
Confidence 99999999874 4 78889999999999999864 3 3 567889999999999998 45555678999999999999
Q ss_pred ccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCC
Q 003307 323 GSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYP 402 (832)
Q Consensus 323 ~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 402 (832)
+..+..+.+|+.|+++.| +|+.|++++|.+.+.+| +..+++|+.|++++|.+.+.+|. ..+
T Consensus 247 ~~~~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~ 307 (457)
T 3bz5_A 247 ELDVSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAA 307 (457)
T ss_dssp CCCCTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTC
T ss_pred CcCHHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCC
Confidence 887778889999998876 46788999999888777 56789999999999998877774 345
Q ss_pred CCCEEEccCCcccccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcC
Q 003307 403 ELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKF 482 (832)
Q Consensus 403 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l 482 (832)
+|+.|++++| ++|+.|++++|+|++. + +..+. +|+.||+++|+|++ +
T Consensus 308 ~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~---------~L~~L~l~~N~l~~--------l 354 (457)
T 3bz5_A 308 GITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNT---------KLKSLSCVNAHIQD--------F 354 (457)
T ss_dssp CCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCT---------TCSEEECCSSCCCB--------C
T ss_pred cceEechhhc-------------ccCCEEECCCCccccc-c--cccCC---------cCcEEECCCCCCCC--------c
Confidence 5666665554 5788888888888873 3 22222 38888888888876 3
Q ss_pred CCCCEEeCcCCcCcccCCCCccCCCcEEEcCCCccccccCccCC
Q 003307 483 HNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLR 526 (832)
Q Consensus 483 ~~L~~L~Ls~N~l~g~ip~~~~~~L~~l~ls~N~l~g~~p~~~~ 526 (832)
+.|..|++++|.++|. + -...+..+++++|+++|.+|..+.
T Consensus 355 ~~L~~L~l~~n~l~g~-~--~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 355 SSVGKIPALNNNFEAE-G--QTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp TTGGGSSGGGTSEEEE-E--EEEECCCBCCBTTBEEEECCTTCB
T ss_pred cccccccccCCcEEec-c--eeeecCccccccCcEEEEcChhHh
Confidence 4566778888888876 1 113577788889999988887653
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-39 Score=343.46 Aligned_cols=290 Identities=25% Similarity=0.424 Sum_probs=255.2
Q ss_pred CCHHHHHHHHHhhhcCCCCCCcccccCccccCCCCCCCCCCCCccccCC----CcEEEEEeCCCCCcc--ccCcccccCC
Q 003307 16 LGQSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITCTN----GYVTSIMLNDMGLVG--NFSFPTIIGL 89 (832)
Q Consensus 16 ~~~~~~~~l~~~k~~~~~~~~~~~l~~w~~~~~~~~~c~~~w~gv~C~~----~~v~~l~l~~~~l~g--~~~~~~~~~l 89 (832)
+.++|++||++||+++ .+|. .+++|..+ .++|.|.|.||.|+. ++|+.|+|+++++.| .+ ++.+.++
T Consensus 3 c~~~~~~aL~~~k~~~-~~~~--~l~~W~~~---~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~-~~~l~~l 75 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDL-GNPT--TLSSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI-PSSLANL 75 (313)
T ss_dssp SCHHHHHHHHHHHHHT-TCCG--GGTTCCTT---SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC-CGGGGGC
T ss_pred CCHHHHHHHHHHHHhc-CCcc--cccCCCCC---CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCccc-ChhHhCC
Confidence 4578999999999999 5665 48899753 578866699999973 789999999999998 77 5789999
Q ss_pred CCCCEEEcCC-CCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEee
Q 003307 90 KMLCNVSVSN-NQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLD 167 (832)
Q Consensus 90 ~~L~~L~Ls~-n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 167 (832)
++|++|+|++ |.+.+.+| .|+.+++|++|+|++|.+++.+|..|.++++|++|+|++|.+++.+|..|.++++|++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 9999999995 99999888 899999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCccchhhhcCC-CCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEcc
Q 003307 168 LRANRFGGDIMHLLSQLG-SVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDAS 246 (832)
Q Consensus 168 L~~N~l~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls 246 (832)
|++|++++.+|..+..++ +|++|+|++|++++.+|..+..+ + |+.|++++|.+++..+.. +..+++|+.|+++
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l---~-L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~ 229 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL---N-LAFVDLSRNMLEGDASVL--FGSDKNTQKIHLA 229 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC---C-CSEEECCSSEEEECCGGG--CCTTSCCSEEECC
T ss_pred CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC---c-ccEEECcCCcccCcCCHH--HhcCCCCCEEECC
Confidence 999999999999999998 99999999999999888877665 3 999999999999877766 8899999999999
Q ss_pred CCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccC-CCCCCEEEecCCe
Q 003307 247 NNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSIT-SATLKKVNLSSNK 320 (832)
Q Consensus 247 ~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~-~~~L~~L~L~~N~ 320 (832)
+|.+++.++.+..+++|++|+|++|++++.+|..+ ..+++|++|++++|++++.+|... ..+|+.+++++|+
T Consensus 230 ~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL--TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp SSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGG--GGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred CCceeeecCcccccCCCCEEECcCCcccCcCChHH--hcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 99999888888889999999999999998899887 567788888888888877666432 3466777777776
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-38 Score=352.85 Aligned_cols=373 Identities=23% Similarity=0.300 Sum_probs=248.9
Q ss_pred cCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCC-------------CEEEccccccccc
Q 003307 87 IGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNL-------------MLLNISSNSFEGT 152 (832)
Q Consensus 87 ~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------------~~L~Ls~N~l~~~ 152 (832)
...++|++|++++|.+ +.+| +++++++|++|++++|.++|.+|..++++.+| ++|++++|.+++
T Consensus 8 ~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~- 85 (454)
T 1jl5_A 8 VSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS- 85 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-
T ss_pred cccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-
Confidence 3468899999999999 6777 89999999999999999999999999988865 999999999886
Q ss_pred CCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCC
Q 003307 153 FPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHD 232 (832)
Q Consensus 153 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 232 (832)
+|.. .++|++|++++|++++ +|.. +++|++|++++|++++. + .+ .++|++|++++|.+++ ++ .
T Consensus 86 lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~----~~--~~~L~~L~L~~n~l~~-lp-~- 148 (454)
T 1jl5_A 86 LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-S----DL--PPLLEYLGVSNNQLEK-LP-E- 148 (454)
T ss_dssp CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-C----SC--CTTCCEEECCSSCCSS-CC-C-
T ss_pred CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-c----CC--CCCCCEEECcCCCCCC-Cc-c-
Confidence 4442 3789999999999987 4543 47899999999988842 2 11 1689999999999886 44 3
Q ss_pred CCCCCCCcCEEEccCCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCC
Q 003307 233 GMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLK 312 (832)
Q Consensus 233 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~ 312 (832)
+..+++|+.|++++|++++ +|.. ..+|++|++++|++++ +| .+ ..+++|++|++++|++++.... ..+|+
T Consensus 149 -~~~l~~L~~L~l~~N~l~~-lp~~--~~~L~~L~L~~n~l~~-l~-~~--~~l~~L~~L~l~~N~l~~l~~~--~~~L~ 218 (454)
T 1jl5_A 149 -LQNSSFLKIIDVDNNSLKK-LPDL--PPSLEFIAAGNNQLEE-LP-EL--QNLPFLTAIYADNNSLKKLPDL--PLSLE 218 (454)
T ss_dssp -CTTCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSS-CC-CC--TTCTTCCEEECCSSCCSSCCCC--CTTCC
T ss_pred -cCCCCCCCEEECCCCcCcc-cCCC--cccccEEECcCCcCCc-Cc-cc--cCCCCCCEEECCCCcCCcCCCC--cCccc
Confidence 8889999999999999886 4422 2589999999999985 66 34 5788899999999988873322 24889
Q ss_pred EEEecCCeecccCCC--CCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcC
Q 003307 313 KVNLSSNKLSGSLPA--RVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSL 390 (832)
Q Consensus 313 ~L~L~~N~l~~~~p~--~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 390 (832)
+|++++|+++ .+|. .+.+|+.|++++|++++... ...+|+.|++++|.+++ +|.. +++|++|++++|++
T Consensus 219 ~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 219 SIVAGNNILE-ELPELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIF 289 (454)
T ss_dssp EEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCC
T ss_pred EEECcCCcCC-cccccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCcc
Confidence 9999999888 5664 34467788888888887433 12468888888888886 4433 36788888888888
Q ss_pred CCCcccccCCCCCCCEEEccCCcccccCcccccCC-CCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCC
Q 003307 391 EGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTS-TKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYN 469 (832)
Q Consensus 391 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N 469 (832)
++ +|.. .++|+.|++++|++++.. .+ ++|+.|++++|++++ +|... .+|++|++++|
T Consensus 290 ~~-l~~~---~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~-lp~~~------------~~L~~L~L~~N 347 (454)
T 1jl5_A 290 SG-LSEL---PPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIE-LPALP------------PRLERLIASFN 347 (454)
T ss_dssp SE-ESCC---CTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSC-CCCCC------------TTCCEEECCSS
T ss_pred Cc-ccCc---CCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccc-ccccC------------CcCCEEECCCC
Confidence 75 2211 257888888888887632 22 578888888888876 44321 13888888888
Q ss_pred cCcccCChhhhcCCCCCEEeCcCCcCcc--cCCCCccCCCcEEEcCCCccccccCccCCCCC
Q 003307 470 SLSGRLLPGISKFHNLVYLNLSNNKFEG--SIPDGLPNGLKEFNVSFNNLSGVVPENLRNFP 529 (832)
Q Consensus 470 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g--~ip~~~~~~L~~l~ls~N~l~g~~p~~~~~~~ 529 (832)
++++ +|. .+++|+.|+|++|++++ .+|.++ . +++.|++.|.+|..+..+.
T Consensus 348 ~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l----~--~L~~n~~~~~i~~~~~~L~ 399 (454)
T 1jl5_A 348 HLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESV----E--DLRMNSHLAEVPELPQNLK 399 (454)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTC----C--EEECCC-------------
T ss_pred cccc-ccc---hhhhccEEECCCCCCCcCCCChHHH----H--hhhhcccccccccccCcCC
Confidence 8884 555 46788888888888887 566554 2 3456777787776544433
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=344.78 Aligned_cols=346 Identities=21% Similarity=0.272 Sum_probs=227.9
Q ss_pred CCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEee
Q 003307 88 GLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLD 167 (832)
Q Consensus 88 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 167 (832)
.+++|+.|+++++.+.. ++.+..+++|++|+|++|.+++..+ |.++++|++|++++|.+++..+ |.++++|++|+
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred HhccccEEecCCCCCcc-CcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 45677888888887765 4467778888888888888886654 8888888888888888886554 88888888888
Q ss_pred CcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccC
Q 003307 168 LRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASN 247 (832)
Q Consensus 168 L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~ 247 (832)
|++|++++..+ +.++++|++|++++|.+++. ..+..+++|+.|+++ |.+.+.. . +..+++|+.|++++
T Consensus 119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~l~-~~~~~~~--~--~~~l~~L~~L~l~~ 186 (466)
T 1o6v_A 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISDI-----SALSGLTSLQQLSFG-NQVTDLK--P--LANLTTLERLDISS 186 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-----GGGTTCTTCSEEEEE-ESCCCCG--G--GTTCTTCCEEECCS
T ss_pred CCCCCCCCChH--HcCCCCCCEEECCCCccCCC-----hhhccCCcccEeecC-CcccCch--h--hccCCCCCEEECcC
Confidence 88888876644 78888888888888887742 224456777777775 3443221 1 66777788888887
Q ss_pred CcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCC
Q 003307 248 NHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPA 327 (832)
Q Consensus 248 N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~ 327 (832)
|.+++. +.+..+++|+.|++++|++++..| + ..+++|+.|++++|++++.......++|+.|++++|++++.
T Consensus 187 n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--- 258 (466)
T 1o6v_A 187 NKVSDI-SVLAKLTNLESLIATNNQISDITP--L--GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL--- 258 (466)
T ss_dssp SCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--G--GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC---
T ss_pred CcCCCC-hhhccCCCCCEEEecCCccccccc--c--cccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccc---
Confidence 777643 456677777777777777775544 2 34566777777777666532222233444444444444322
Q ss_pred CCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEE
Q 003307 328 RVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVI 407 (832)
Q Consensus 328 ~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 407 (832)
.+ +...++|+.|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|
T Consensus 259 ------------------~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 314 (466)
T 1o6v_A 259 ------------------AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYL 314 (466)
T ss_dssp ------------------GG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred ------------------hh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence 22 1222356777777777665443 6667777777777777765443 5666777777
Q ss_pred EccCCcccccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCE
Q 003307 408 DLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVY 487 (832)
Q Consensus 408 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 487 (832)
++++|++++..+ +..+++|+.|++++|++++. + .+..+ .+|+.|++++|++++..| +..+++|+.
T Consensus 315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~l~~l---------~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 379 (466)
T 1o6v_A 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-S-SLANL---------TNINWLSAGHNQISDLTP--LANLTRITQ 379 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-G-GGTTC---------TTCCEEECCSSCCCBCGG--GTTCTTCCE
T ss_pred ECcCCcCCCchh--hccCccCCEeECCCCccCCc-h-hhccC---------CCCCEEeCCCCccCccch--hhcCCCCCE
Confidence 777777776544 56677777777777776654 1 11111 236777777777776655 667777777
Q ss_pred EeCcCCcCcc
Q 003307 488 LNLSNNKFEG 497 (832)
Q Consensus 488 L~Ls~N~l~g 497 (832)
|++++|++++
T Consensus 380 L~l~~n~~~~ 389 (466)
T 1o6v_A 380 LGLNDQAWTN 389 (466)
T ss_dssp EECCCEEEEC
T ss_pred EeccCCcccC
Confidence 7777777765
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=336.97 Aligned_cols=334 Identities=20% Similarity=0.194 Sum_probs=243.0
Q ss_pred CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCC
Q 003307 108 DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSV 187 (832)
Q Consensus 108 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 187 (832)
.++.+++|++|+|++|.|++. | .|..+++|++|+|++|++++. | ++.+++|++|+|++|++++. + ++++++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 678899999999999999976 5 699999999999999999975 4 89999999999999999986 3 8899999
Q ss_pred CEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCCCccccccccEEE
Q 003307 188 VHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILR 267 (832)
Q Consensus 188 ~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~ 267 (832)
++|++++|++++ ++ +..+++|++|++++|++++. . +..+++|+.|++++|...+.+ .+..+++|+.|+
T Consensus 109 ~~L~L~~N~l~~-l~-----~~~l~~L~~L~l~~N~l~~l---~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ 176 (457)
T 3bz5_A 109 TYLNCDTNKLTK-LD-----VSQNPLLTYLNCARNTLTEI---D--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLD 176 (457)
T ss_dssp CEEECCSSCCSC-CC-----CTTCTTCCEEECTTSCCSCC---C--CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEE
T ss_pred CEEECCCCcCCe-ec-----CCCCCcCCEEECCCCcccee---c--cccCCcCCEEECCCCCccccc-ccccCCcCCEEE
Confidence 999999999986 33 45678999999999999873 2 778899999999999766655 577889999999
Q ss_pred ccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcch
Q 003307 268 LGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLS 347 (832)
Q Consensus 268 L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~ 347 (832)
+++|++++ +| + ..+++|+.|++++|++++. +....++|+.|++++|++++.....+.+|+.|++++|++++...
T Consensus 177 ls~n~l~~-l~--l--~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 177 CSFNKITE-LD--V--SQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp CCSSCCCC-CC--C--TTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCC
T ss_pred CCCCccce-ec--c--ccCCCCCEEECcCCcCCee-ccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcCH
Confidence 99999985 55 3 4677888888888888865 33444567777777777776322223334444444444444321
Q ss_pred hhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCC
Q 003307 348 RMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTK 427 (832)
Q Consensus 348 ~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 427 (832)
. ...+|+.|++++| +|+.|++++|.+.+.+| ++.+++|+.|++++|.+.+.+|. ..++
T Consensus 251 ~---~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~ 308 (457)
T 3bz5_A 251 S---TLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAG 308 (457)
T ss_dssp T---TCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCC
T ss_pred H---HCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCc
Confidence 1 1123444443332 23344555555544444 34455555555555555544442 2344
Q ss_pred CCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCccCCC
Q 003307 428 LTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGL 507 (832)
Q Consensus 428 L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~L 507 (832)
|+.|++++| .+|++|+|++|+|++. + ++++++|+.||+++|+|++ + +.|
T Consensus 309 L~~L~l~~~----------------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-l-----~~L 357 (457)
T 3bz5_A 309 ITELDLSQN----------------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-F-----SSV 357 (457)
T ss_dssp CSCCCCTTC----------------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-C-----TTG
T ss_pred ceEechhhc----------------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-c-----ccc
Confidence 445555444 2499999999999984 3 8999999999999999997 3 347
Q ss_pred cEEEcCCCccccc
Q 003307 508 KEFNVSFNNLSGV 520 (832)
Q Consensus 508 ~~l~ls~N~l~g~ 520 (832)
..|++++|.++|.
T Consensus 358 ~~L~l~~n~l~g~ 370 (457)
T 3bz5_A 358 GKIPALNNNFEAE 370 (457)
T ss_dssp GGSSGGGTSEEEE
T ss_pred ccccccCCcEEec
Confidence 7788999999987
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=342.19 Aligned_cols=302 Identities=18% Similarity=0.210 Sum_probs=195.9
Q ss_pred CCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeC
Q 003307 90 KMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDL 168 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 168 (832)
++++.|+|++|++++..+ .|..+++|++|+|++|.|++..|..|.++++|++|+|++|++++..+..|.++++|++|+|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 578888888888888776 7888888888888888888887888888888888888888888766667788888888888
Q ss_pred cCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCC
Q 003307 169 RANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNN 248 (832)
Q Consensus 169 ~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 248 (832)
++|++++..+..|.++++|++|+|++|.+++..+..+. .+++|+.|++++|.+++..+.. +..+++|+.|++++|
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS---GLNSLEQLTLEKCNLTSIPTEA--LSHLHGLIVLRLRHL 186 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSST---TCTTCCEEEEESCCCSSCCHHH--HTTCTTCCEEEEESC
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhcc---CCCCCCEEECCCCcCcccChhH--hcccCCCcEEeCCCC
Confidence 88888877777788888888888888877755443332 3355666666666554322222 444555555555555
Q ss_pred cccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCC
Q 003307 249 HLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPA 327 (832)
Q Consensus 249 ~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~ 327 (832)
.+.+..+ .+..+++|+.|++++|.+.+.+|...+. ..+|+.|++++|++
T Consensus 187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------------------------~~~L~~L~l~~n~l------ 236 (477)
T 2id5_A 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY------------------------GLNLTSLSITHCNL------ 236 (477)
T ss_dssp CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT------------------------TCCCSEEEEESSCC------
T ss_pred cCcEeChhhcccCcccceeeCCCCccccccCccccc------------------------CccccEEECcCCcc------
Confidence 5554444 4455555555555555444333332210 11233333333333
Q ss_pred CCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEE
Q 003307 328 RVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVI 407 (832)
Q Consensus 328 ~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 407 (832)
++.....+....+|+.|+|++|.+++..+..|..+++|++|+|++|++++..|..|..+++|+.|
T Consensus 237 ---------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 301 (477)
T 2id5_A 237 ---------------TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL 301 (477)
T ss_dssp ---------------CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEE
T ss_pred ---------------cccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEE
Confidence 22222223333356777777777776666667777777777777777776666777777777777
Q ss_pred EccCCcccccCcccccCCCCCCeEeccCCccccc
Q 003307 408 DLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGP 441 (832)
Q Consensus 408 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 441 (832)
+|++|+|++..+..|..+++|+.|+|++|.+...
T Consensus 302 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 302 NVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp ECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred ECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 7777777766666666667777777777766543
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-35 Score=330.99 Aligned_cols=348 Identities=20% Similarity=0.245 Sum_probs=280.6
Q ss_pred CCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCE
Q 003307 110 GSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVH 189 (832)
Q Consensus 110 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~ 189 (832)
..+++|+.|++++|.++.. | .+..+++|++|+|++|.+++..+ |.++++|++|+|++|.+++..+ +.++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 3467899999999999864 4 48889999999999999997654 9999999999999999987766 999999999
Q ss_pred EECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCCCccccccccEEEcc
Q 003307 190 VDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLG 269 (832)
Q Consensus 190 L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~ 269 (832)
|++++|.+++..+ +..+++|++|++++|.+++. +. +..+++|+.|+++ |.+.+. +.+..+++|+.|+++
T Consensus 117 L~L~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~--~~--~~~l~~L~~L~l~-~~~~~~-~~~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 117 LTLFNNQITDIDP-----LKNLTNLNRLELSSNTISDI--SA--LSGLTSLQQLSFG-NQVTDL-KPLANLTTLERLDIS 185 (466)
T ss_dssp EECCSSCCCCCGG-----GTTCTTCSEEEEEEEEECCC--GG--GTTCTTCSEEEEE-ESCCCC-GGGTTCTTCCEEECC
T ss_pred EECCCCCCCCChH-----HcCCCCCCEEECCCCccCCC--hh--hccCCcccEeecC-CcccCc-hhhccCCCCCEEECc
Confidence 9999999985432 45678899999999988752 22 7788888888886 455433 347788888888888
Q ss_pred ccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhh
Q 003307 270 SNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRM 349 (832)
Q Consensus 270 ~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~ 349 (832)
+|.+++. + .+ ..+++|++|++++|.+++..+.....+|+.|++++|++++ . + .
T Consensus 186 ~n~l~~~-~-~l--~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~---------------------~-~-~ 238 (466)
T 1o6v_A 186 SNKVSDI-S-VL--AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD---------------------I-G-T 238 (466)
T ss_dssp SSCCCCC-G-GG--GGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC---------------------C-G-G
T ss_pred CCcCCCC-h-hh--ccCCCCCEEEecCCcccccccccccCCCCEEECCCCCccc---------------------c-h-h
Confidence 8888743 3 23 4567788888888888776654445566666666666553 2 1 1
Q ss_pred ccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCC
Q 003307 350 QNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLT 429 (832)
Q Consensus 350 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 429 (832)
+...++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 312 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT 312 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence 2233479999999999998765 8899999999999999997655 8899999999999999998654 88999999
Q ss_pred eEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCccCCCcE
Q 003307 430 DLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKE 509 (832)
Q Consensus 430 ~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~L~~ 509 (832)
.|+|++|++++..|. .... +|+.|++++|++++. +.+..+++|+.|++++|++++..|-.-.++|+.
T Consensus 313 ~L~L~~n~l~~~~~~--~~l~---------~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~ 379 (466)
T 1o6v_A 313 YLTLYFNNISDISPV--SSLT---------KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQ 379 (466)
T ss_dssp EEECCSSCCSCCGGG--GGCT---------TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCE
T ss_pred EEECcCCcCCCchhh--ccCc---------cCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccchhhcCCCCCE
Confidence 999999999987662 2222 499999999999985 578999999999999999999888333378999
Q ss_pred EEcCCCccccc
Q 003307 510 FNVSFNNLSGV 520 (832)
Q Consensus 510 l~ls~N~l~g~ 520 (832)
|++++|.+++.
T Consensus 380 L~l~~n~~~~~ 390 (466)
T 1o6v_A 380 LGLNDQAWTNA 390 (466)
T ss_dssp EECCCEEEECC
T ss_pred EeccCCcccCC
Confidence 99999999984
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-35 Score=334.11 Aligned_cols=330 Identities=19% Similarity=0.185 Sum_probs=191.9
Q ss_pred CCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEEC
Q 003307 113 QSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDL 192 (832)
Q Consensus 113 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 192 (832)
+++++|+|++|+|+++.|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 68999999999999998999999999999999999999988999999999999999999999887788889999999999
Q ss_pred ccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEcccc
Q 003307 193 SNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSN 271 (832)
Q Consensus 193 s~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N 271 (832)
++|.+++..+..+. .+++|+.|++++|.+++..+.. |..+++|+.|++++|.+++..+ .+..+++|+.|+|++|
T Consensus 112 s~n~i~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 112 SENKIVILLDYMFQ---DLYNLKSLEVGDNDLVYISHRA--FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp TTSCCCEECTTTTT---TCTTCCEEEECCTTCCEECTTS--STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred CCCccccCChhHcc---ccccCCEEECCCCccceeChhh--ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence 99988865554432 2355555555555554433333 4444444444444444443322 2333444444444444
Q ss_pred CCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhcc
Q 003307 272 QLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQN 351 (832)
Q Consensus 272 ~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~ 351 (832)
.+.+..+..+ .. ..+
T Consensus 187 ~i~~~~~~~~--~~----------------------l~~----------------------------------------- 201 (477)
T 2id5_A 187 NINAIRDYSF--KR----------------------LYR----------------------------------------- 201 (477)
T ss_dssp CCCEECTTCS--CS----------------------CTT-----------------------------------------
T ss_pred cCcEeChhhc--cc----------------------Ccc-----------------------------------------
Confidence 4332211111 11 123
Q ss_pred ccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeE
Q 003307 352 WGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDL 431 (832)
Q Consensus 352 ~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 431 (832)
|+.|++++|.+.+.+|.......+|++|+|++|++++..+..+..+++|+.|+|++|++++..+..|..+++|+.|
T Consensus 202 ----L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (477)
T 2id5_A 202 ----LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEI 277 (477)
T ss_dssp ----CCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEE
T ss_pred ----cceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEE
Confidence 3333333333333333333333345555555555543333444455555555555555555444445555555555
Q ss_pred eccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCc-cCCCcEE
Q 003307 432 NLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGL-PNGLKEF 510 (832)
Q Consensus 432 ~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~-~~~L~~l 510 (832)
+|++|++++..|..+..+. +|+.|+|++|+|++..+..|..+++|+.|+|++|++.+..+..+ ......+
T Consensus 278 ~L~~n~l~~~~~~~~~~l~---------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~ 348 (477)
T 2id5_A 278 QLVGGQLAVVEPYAFRGLN---------YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRL 348 (477)
T ss_dssp ECCSSCCSEECTTTBTTCT---------TCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSS
T ss_pred ECCCCccceECHHHhcCcc---------cCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhcc
Confidence 5555555544443332222 25555555555555555556667777777777777765543211 1222233
Q ss_pred EcCCCccccccCccC
Q 003307 511 NVSFNNLSGVVPENL 525 (832)
Q Consensus 511 ~ls~N~l~g~~p~~~ 525 (832)
++..+...+..|..+
T Consensus 349 ~~~~~~~~C~~p~~~ 363 (477)
T 2id5_A 349 NFNRQQPTCATPEFV 363 (477)
T ss_dssp CCTTCCCBEEESGGG
T ss_pred ccCccCceeCCchHH
Confidence 444455555445443
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-35 Score=323.10 Aligned_cols=351 Identities=20% Similarity=0.173 Sum_probs=233.7
Q ss_pred ccCccccCCCCCCCCCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEE
Q 003307 40 IDSWDTKSLSSDGCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFL 118 (832)
Q Consensus 40 l~~w~~~~~~~~~c~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L 118 (832)
+++|... ..|.+.|.+..|.. ..+.+......... ...-..+.+++.|++++|.+...++ .+..+++|++|
T Consensus 3 ~~~~~~~----~~C~~~~~~~~c~~---~~~~i~~~~~~~~~-~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L 74 (390)
T 3o6n_A 3 VKPRQPE----YKCIDSNLQYDCVF---YDVHIDMQTQDVYF-GFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 74 (390)
T ss_dssp ----CCE----ECBCC------EEE---ESCEECSSCCCCEE-SCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEE
T ss_pred cCCCCCc----cceehhhhhhccce---eeeeeecccccccc-cccccccCCceEEEecCCchhhCChhHhcccccCcEE
Confidence 5678653 23445677776641 11222222221111 1123346788889998888887666 57888889999
Q ss_pred ECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCc
Q 003307 119 DLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFS 198 (832)
Q Consensus 119 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 198 (832)
+|++|.+++..+..|..+++|++|+|++|.+++..|..|+++++|++|+|++|+++...+..|.++++|++|++++|.++
T Consensus 75 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~ 154 (390)
T 3o6n_A 75 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 154 (390)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccC
Confidence 99999888887788888889999999999888887888888888999999988888766666788888888888888887
Q ss_pred cccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCCCccccccccEEEccccCCCCCCC
Q 003307 199 GSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLP 278 (832)
Q Consensus 199 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p 278 (832)
+..+..+. .+++|++|++++|.+++.. +..+++|+.|++++|.+++. ....+|+.|++++|.+.
T Consensus 155 ~~~~~~~~---~l~~L~~L~l~~n~l~~~~-----~~~l~~L~~L~l~~n~l~~~----~~~~~L~~L~l~~n~l~---- 218 (390)
T 3o6n_A 155 RIEDDTFQ---ATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSIN---- 218 (390)
T ss_dssp BCCTTTTS---SCTTCCEEECCSSCCSBCC-----GGGCTTCSEEECCSSCCSEE----ECCSSCSEEECCSSCCC----
T ss_pred ccChhhcc---CCCCCCEEECCCCcCCccc-----cccccccceeeccccccccc----CCCCcceEEECCCCeee----
Confidence 55444333 3466777777777665421 44456666666666655532 22234555555555554
Q ss_pred hhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhccccCcccE
Q 003307 279 VALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVED 358 (832)
Q Consensus 279 ~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~ 358 (832)
.... ....+|+.|++++|++++. ..+. ..++|++
T Consensus 219 ----------------------~~~~-~~~~~L~~L~l~~n~l~~~--~~l~---------------------~l~~L~~ 252 (390)
T 3o6n_A 219 ----------------------VVRG-PVNVELTILKLQHNNLTDT--AWLL---------------------NYPGLVE 252 (390)
T ss_dssp ----------------------EEEC-CCCSSCCEEECCSSCCCCC--GGGG---------------------GCTTCSE
T ss_pred ----------------------eccc-cccccccEEECCCCCCccc--HHHc---------------------CCCCccE
Confidence 3211 1224566666666665532 1111 1236888
Q ss_pred EEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcc
Q 003307 359 IHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNF 438 (832)
Q Consensus 359 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 438 (832)
|+|++|.+++..|..+..+++|++|+|++|++++ +|..+..+++|++|++++|++++ +|..+..+++|+.|+|++|++
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp EECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCC
T ss_pred EECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCcc
Confidence 8888888888888888888889999999998884 56666788899999999998885 466677888999999999988
Q ss_pred cccCCcccccCCCCCcccCcccccEEEccCCcCccc
Q 003307 439 SGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGR 474 (832)
Q Consensus 439 ~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 474 (832)
+.. |.. .. .+|+.|++++|++++.
T Consensus 331 ~~~-~~~--~~---------~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 331 VTL-KLS--TH---------HTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCC-CCC--TT---------CCCSEEECCSSCEEHH
T ss_pred cee-Cch--hh---------ccCCEEEcCCCCccch
Confidence 753 311 11 2488999999998864
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=336.53 Aligned_cols=312 Identities=21% Similarity=0.195 Sum_probs=231.6
Q ss_pred CCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEe
Q 003307 88 GLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYL 166 (832)
Q Consensus 88 ~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 166 (832)
.+.+++.|++++|.+...++ .+..+++|++|+|++|.|++..|..|..+++|++|+|++|.|++..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46788899999998887777 57888999999999999998888889999999999999999998888888899999999
Q ss_pred eCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEcc
Q 003307 167 DLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDAS 246 (832)
Q Consensus 167 ~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls 246 (832)
+|++|.+++.++..|.++++|++|+|++|.+++..|..++ .+++|+.|++++|.+++.. +..+++|+.|+++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~-----~~~l~~L~~L~l~ 200 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ---ATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVS 200 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT---TCTTCCEEECTTSCCSBCC-----GGGCTTCSEEECC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhh---cCCcCcEEECcCCCCCCcC-----hhhhhhhhhhhcc
Confidence 9999999877777788888888888888888866554443 3467777777777765431 3445666666666
Q ss_pred CCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCC
Q 003307 247 NNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLP 326 (832)
Q Consensus 247 ~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p 326 (832)
+|.+++. ....+|+.|++++|.+. ...+. ...+|+.|+|++|.+++.
T Consensus 201 ~n~l~~l----~~~~~L~~L~ls~n~l~--------------------------~~~~~-~~~~L~~L~L~~n~l~~~-- 247 (597)
T 3oja_B 201 YNLLSTL----AIPIAVEELDASHNSIN--------------------------VVRGP-VNVELTILKLQHNNLTDT-- 247 (597)
T ss_dssp SSCCSEE----ECCTTCSEEECCSSCCC--------------------------EEECS-CCSCCCEEECCSSCCCCC--
T ss_pred cCccccc----cCCchhheeeccCCccc--------------------------ccccc-cCCCCCEEECCCCCCCCC--
Confidence 6655532 22334555555555554 22221 123566666666666532
Q ss_pred CCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCE
Q 003307 327 ARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKV 406 (832)
Q Consensus 327 ~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 406 (832)
..+.+ .++|+.|+|++|.+++.+|..|..+++|+.|+|++|.+++ +|..+..+++|+.
T Consensus 248 ~~l~~---------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~ 305 (597)
T 3oja_B 248 AWLLN---------------------YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKV 305 (597)
T ss_dssp GGGGG---------------------CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCE
T ss_pred hhhcc---------------------CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcE
Confidence 11222 2368888888888888888888899999999999999985 5677778899999
Q ss_pred EEccCCcccccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccC
Q 003307 407 IDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRL 475 (832)
Q Consensus 407 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 475 (832)
|+|++|.+++ +|..+..+++|+.|+|++|++++. |.. .. .+|+.|+|++|.+.+..
T Consensus 306 L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~-~~~--~~---------~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 306 LDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-KLS--TH---------HTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp EECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-CCC--TT---------CCCSEEECCSSCEEHHH
T ss_pred EECCCCCCCc-cCcccccCCCCCEEECCCCCCCCc-Chh--hc---------CCCCEEEeeCCCCCChh
Confidence 9999999985 567788889999999999998754 211 11 24899999999998754
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=309.61 Aligned_cols=314 Identities=20% Similarity=0.175 Sum_probs=191.4
Q ss_pred CCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCE
Q 003307 110 GSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVH 189 (832)
Q Consensus 110 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~ 189 (832)
..++++++|++++|.++.+.+..|..+++|++|+|++|.+++..+..|.++++|++|+|++|++++..|..|+++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 34789999999999999877777899999999999999999888889999999999999999999988889999999999
Q ss_pred EECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEc
Q 003307 190 VDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRL 268 (832)
Q Consensus 190 L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L 268 (832)
|+|++|.++. +|..+ +..+++|+.|++++|.+++..+ .+..+++|++|++
T Consensus 122 L~L~~n~l~~-l~~~~----------------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 172 (390)
T 3o6n_A 122 LVLERNDLSS-LPRGI----------------------------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172 (390)
T ss_dssp EECCSSCCCC-CCTTT----------------------------TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEEC
T ss_pred EECCCCccCc-CCHHH----------------------------hcCCCCCcEEECCCCccCccChhhccCCCCCCEEEC
Confidence 9999998873 22221 2334444445555554444444 3555555666666
Q ss_pred cccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchh
Q 003307 269 GSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSR 348 (832)
Q Consensus 269 ~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~ 348 (832)
++|++++. +. ..+++|+.|++++|.+++.. ...+|++|++++|.++.. ...
T Consensus 173 ~~n~l~~~-~~----~~l~~L~~L~l~~n~l~~~~---~~~~L~~L~l~~n~l~~~---------------------~~~ 223 (390)
T 3o6n_A 173 SSNRLTHV-DL----SLIPSLFHANVSYNLLSTLA---IPIAVEELDASHNSINVV---------------------RGP 223 (390)
T ss_dssp CSSCCSBC-CG----GGCTTCSEEECCSSCCSEEE---CCSSCSEEECCSSCCCEE---------------------ECC
T ss_pred CCCcCCcc-cc----ccccccceeecccccccccC---CCCcceEEECCCCeeeec---------------------ccc
Confidence 66655532 21 23455666666666554311 112344444444443321 100
Q ss_pred hccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCC
Q 003307 349 MQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKL 428 (832)
Q Consensus 349 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 428 (832)
. ..+|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++. +..+..+++
T Consensus 224 ~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~- 296 (390)
T 3o6n_A 224 V---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPT- 296 (390)
T ss_dssp C---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTT-
T ss_pred c---cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCC-
Confidence 0 01344555555544432 2344444444444444444444444444444444444444444432 222233333
Q ss_pred CeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCccCCCc
Q 003307 429 TDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLK 508 (832)
Q Consensus 429 ~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~L~ 508 (832)
|++|+|++|+++ .+|..+..+++|+.|+|++|+++. +|....++|+
T Consensus 297 --------------------------------L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~L~ 342 (390)
T 3o6n_A 297 --------------------------------LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LKLSTHHTLK 342 (390)
T ss_dssp --------------------------------CCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CCCCTTCCCS
T ss_pred --------------------------------CCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eCchhhccCC
Confidence 566666666665 345556677777777777777764 3333335677
Q ss_pred EEEcCCCccccccC
Q 003307 509 EFNVSFNNLSGVVP 522 (832)
Q Consensus 509 ~l~ls~N~l~g~~p 522 (832)
.|++++|++++...
T Consensus 343 ~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 343 NLTLSHNDWDCNSL 356 (390)
T ss_dssp EEECCSSCEEHHHH
T ss_pred EEEcCCCCccchhH
Confidence 77777777776543
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-33 Score=323.05 Aligned_cols=332 Identities=21% Similarity=0.214 Sum_probs=206.2
Q ss_pred CCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEE
Q 003307 111 SIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHV 190 (832)
Q Consensus 111 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L 190 (832)
.+.+++.|++++|.++.+.+..|..+++|++|+|++|.|++..|..|.++++|++|+|++|.+++..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46889999999999998888888999999999999999999888899999999999999999999999999999999999
Q ss_pred ECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEcc
Q 003307 191 DLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLG 269 (832)
Q Consensus 191 ~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~ 269 (832)
+|++|.+++..+.. |..+++|+.|++++|.+++..| .+..+++|+.|+|+
T Consensus 129 ~L~~n~l~~l~~~~-----------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 179 (597)
T 3oja_B 129 VLERNDLSSLPRGI-----------------------------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179 (597)
T ss_dssp ECCSSCCCCCCTTT-----------------------------TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred EeeCCCCCCCCHHH-----------------------------hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence 99999988432221 3344455555555555554444 45555566666666
Q ss_pred ccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhh
Q 003307 270 SNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRM 349 (832)
Q Consensus 270 ~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~ 349 (832)
+|.+++. +. ..+++|+.|++++|.+++.. ...+|+.|++++|.++.
T Consensus 180 ~N~l~~~-~~----~~l~~L~~L~l~~n~l~~l~---~~~~L~~L~ls~n~l~~-------------------------- 225 (597)
T 3oja_B 180 SNRLTHV-DL----SLIPSLFHANVSYNLLSTLA---IPIAVEELDASHNSINV-------------------------- 225 (597)
T ss_dssp TSCCSBC-CG----GGCTTCSEEECCSSCCSEEE---CCTTCSEEECCSSCCCE--------------------------
T ss_pred CCCCCCc-Ch----hhhhhhhhhhcccCcccccc---CCchhheeeccCCcccc--------------------------
Confidence 6666532 21 23455666666666554311 11234444444444331
Q ss_pred ccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCC
Q 003307 350 QNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLT 429 (832)
Q Consensus 350 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 429 (832)
..+.. .++|+.|+|++|.+++ +..+..+++|+.|+|++|.+++.+|..|..+++|+
T Consensus 226 -------------------~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 281 (597)
T 3oja_B 226 -------------------VRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281 (597)
T ss_dssp -------------------EECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred -------------------ccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCC
Confidence 11110 1234444444444443 23344445555555555555555455555555555
Q ss_pred eEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCccCCCcE
Q 003307 430 DLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKE 509 (832)
Q Consensus 430 ~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~L~~ 509 (832)
.|+|++|++++. |...... .+|+.|+|++|.++ .+|..+..+++|+.|+|++|++++. |....+.|+.
T Consensus 282 ~L~Ls~N~l~~l-~~~~~~l---------~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~L~~ 349 (597)
T 3oja_B 282 RLYISNNRLVAL-NLYGQPI---------PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-KLSTHHTLKN 349 (597)
T ss_dssp EEECTTSCCCEE-ECSSSCC---------TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-CCCTTCCCSE
T ss_pred EEECCCCCCCCC-CcccccC---------CCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-ChhhcCCCCE
Confidence 555555555432 2111111 13666666666666 4566677788888888888888754 3333367888
Q ss_pred EEcCCCccccccCcc-CCCCCCCCCCCCCCCCCC
Q 003307 510 FNVSFNNLSGVVPEN-LRNFPDSAFHPGNSLLTF 542 (832)
Q Consensus 510 l~ls~N~l~g~~p~~-~~~~~~~~~~~~n~~~~~ 542 (832)
|++++|+++|..+.. +..+....+. ++...|.
T Consensus 350 L~l~~N~~~~~~~~~~~~~~~~~~~~-~~~~~C~ 382 (597)
T 3oja_B 350 LTLSHNDWDCNSLRALFRNVARPAVD-DADQHCK 382 (597)
T ss_dssp EECCSSCEEHHHHHHHTTTCCTTTBC-CCCCCCC
T ss_pred EEeeCCCCCChhHHHHHHHHhhhccc-cccccCC
Confidence 888888887764433 4444444333 4444553
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=296.47 Aligned_cols=307 Identities=19% Similarity=0.265 Sum_probs=191.5
Q ss_pred cccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCC
Q 003307 85 TIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLK 164 (832)
Q Consensus 85 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 164 (832)
.+..+++|+.|++++|.+... +.+..+++|++|+|++|.+++..+ |..+++|++|++++|.++.. +.|.++++|+
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~-~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASI-QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred cchhcccccEEEEeCCccccc-hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 445678888899988888753 468888899999999998886644 88888999999999988853 3688888999
Q ss_pred EeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEE
Q 003307 165 YLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFD 244 (832)
Q Consensus 165 ~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 244 (832)
+|+|++|.+++..+ +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|+.|+
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~ 183 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS----PLSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLS 183 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG----GGTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEE
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCccccc----chhhCCCCcEEEecCCCcCCchh----hccCCCCCEEE
Confidence 99999988886544 7888888888888886543332 24456777777777777654322 55667777777
Q ss_pred ccCCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeeccc
Q 003307 245 ASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGS 324 (832)
Q Consensus 245 Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~ 324 (832)
+++|.+.+..+ +..+++|+.|++++|.+.+..+ + ..+++|++|++++|.+++..+....++|++|++++|.++
T Consensus 184 l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~--~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~-- 256 (347)
T 4fmz_A 184 LNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--V--ANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQIS-- 256 (347)
T ss_dssp CTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--G--GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC--
T ss_pred ccCCccccccc-ccCCCccceeecccCCCCCCch--h--hcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccC--
Confidence 77777664333 5666677777777777664333 2 345566666666666554333222233333333333333
Q ss_pred CCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCC
Q 003307 325 LPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPEL 404 (832)
Q Consensus 325 ~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 404 (832)
+. + .+...++|+.|++++|.+++. ..+..+++|++|++++|++++..|..+..+++|
T Consensus 257 -------------------~~-~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 257 -------------------DI-N-AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp -------------------CC-G-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred -------------------CC-h-hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 21 0 111122455555555555543 234555555555555555555555555555555
Q ss_pred CEEEccCCcccccCcccccCCCCCCeEeccCCcc
Q 003307 405 KVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNF 438 (832)
Q Consensus 405 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 438 (832)
++|++++|++++..| +..+++|+.|++++|.|
T Consensus 314 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 314 TTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp SEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred CEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 555555555555433 44555555555555554
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=291.17 Aligned_cols=152 Identities=21% Similarity=0.295 Sum_probs=100.5
Q ss_pred CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCC
Q 003307 108 DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSV 187 (832)
Q Consensus 108 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 187 (832)
.+..+++|++|++++|.++.. + .+..+++|++|++++|.+++..+ |.++++|++|+|++|.++.. +.+..+++|
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L 112 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNL 112 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred cchhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence 455788899999999998854 3 48888999999999999886543 88899999999999988764 358888888
Q ss_pred CEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCCCccccccccEEE
Q 003307 188 VHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILR 267 (832)
Q Consensus 188 ~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~ 267 (832)
++|++++|.+++..+ +..+++|+.|++++|......+. +..+++|+.|++++|.+.+..+ +..+++|+.|+
T Consensus 113 ~~L~l~~n~i~~~~~-----~~~l~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~ 183 (347)
T 4fmz_A 113 RELYLNEDNISDISP-----LANLTKMYSLNLGANHNLSDLSP---LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLS 183 (347)
T ss_dssp SEEECTTSCCCCCGG-----GTTCTTCCEEECTTCTTCCCCGG---GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEE
T ss_pred CEEECcCCcccCchh-----hccCCceeEEECCCCCCcccccc---hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEE
Confidence 888888888874322 33456666666666644322211 4445555555555555443222 34444444444
Q ss_pred ccccCCC
Q 003307 268 LGSNQLS 274 (832)
Q Consensus 268 L~~N~l~ 274 (832)
+++|.+.
T Consensus 184 l~~n~l~ 190 (347)
T 4fmz_A 184 LNYNQIE 190 (347)
T ss_dssp CTTSCCC
T ss_pred ccCCccc
Confidence 4444443
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-30 Score=278.67 Aligned_cols=293 Identities=19% Similarity=0.219 Sum_probs=162.5
Q ss_pred CCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECc
Q 003307 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLS 193 (832)
Q Consensus 114 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls 193 (832)
+++.+++++|.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|+++++|++|+|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4566666666665 3344332 466666666666666656666666666666666666666666666666666666666
Q ss_pred cCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccc--cCC-CccccccccEEEccc
Q 003307 194 NNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVG--AIP-SFNFVFSLRILRLGS 270 (832)
Q Consensus 194 ~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~-~~~~l~~L~~L~L~~ 270 (832)
+|+++ .+|..+. ++|++|++++|.+++..+.. +..+++|+.|++++|.++. ..+ .+..+ +|+.|++++
T Consensus 111 ~n~l~-~l~~~~~-----~~L~~L~l~~n~i~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 111 KNHLV-EIPPNLP-----SSLVELRIHDNRIRKVPKGV--FSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp SSCCC-SCCSSCC-----TTCCEEECCSSCCCCCCSGG--GSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred CCcCC-ccCcccc-----ccCCEEECCCCccCccCHhH--hCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence 66665 2332221 34444444444443221111 3344444444444444431 222 22222 334444444
Q ss_pred cCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhc
Q 003307 271 NQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQ 350 (832)
Q Consensus 271 N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~ 350 (832)
|++++ +|..+ .
T Consensus 182 n~l~~-l~~~~--------------------------------------------------------------------~ 192 (332)
T 2ft3_A 182 AKLTG-IPKDL--------------------------------------------------------------------P 192 (332)
T ss_dssp SBCSS-CCSSS--------------------------------------------------------------------C
T ss_pred CCCCc-cCccc--------------------------------------------------------------------c
Confidence 33331 22111 0
Q ss_pred cccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCe
Q 003307 351 NWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTD 430 (832)
Q Consensus 351 ~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 430 (832)
.+|++|++++|.+++..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|+++ .+|..+..+++|+.
T Consensus 193 ---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~ 268 (332)
T 2ft3_A 193 ---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQV 268 (332)
T ss_dssp ---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCE
T ss_pred ---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCE
Confidence 13555555566665555556666666666666666666655556666666666666666666 34555666677777
Q ss_pred EeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCc--ccCChhhhcCCCCCEEeCcCCc
Q 003307 431 LNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLS--GRLLPGISKFHNLVYLNLSNNK 494 (832)
Q Consensus 431 L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~Ls~N~ 494 (832)
|+|++|++++..+..+..... ......|+.|++++|.+. +..|..|..+++|+.|++++|+
T Consensus 269 L~l~~N~l~~~~~~~~~~~~~---~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 269 VYLHTNNITKVGVNDFCPVGF---GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp EECCSSCCCBCCTTSSSCSSC---CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred EECCCCCCCccChhHcccccc---ccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 777777666443332222110 011224888999999887 6677788899999999999885
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-31 Score=286.94 Aligned_cols=271 Identities=15% Similarity=0.175 Sum_probs=230.7
Q ss_pred cCCCHHHHHHHHHhhhcCCCCCCcccccCccccC-CCCCCCCCCCCccccC----------CCcEEEEEeCCCCCccccC
Q 003307 14 NALGQSDFEALLQLKKGIAKDPSGQIIDSWDTKS-LSSDGCPRNWFGITCT----------NGYVTSIMLNDMGLVGNFS 82 (832)
Q Consensus 14 ~~~~~~~~~~l~~~k~~~~~~~~~~~l~~w~~~~-~~~~~c~~~w~gv~C~----------~~~v~~l~l~~~~l~g~~~ 82 (832)
.++..+|++||++||+++..|+.++ +.+|.... ...++ |.|.|+.|. ..+|+.|+|+++++. .+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~-~~~w~~~~~~~~~~--~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~l- 96 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRW-HSAWRQANSNNPQI--ETRTGRALKATADLLEDATQPGRVALELRSVPLP-QF- 96 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTH-HHHHHHHTTTCTTS--CCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SC-
T ss_pred cccCchHHHHHHHHHHhccCCchhh-hhhhcccccccccc--cccCCcchhhhHHHHhcccccceeEEEccCCCch-hc-
Confidence 3445679999999999886677664 78895221 12344 499999994 368999999999988 55
Q ss_pred cccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCC--
Q 003307 83 FPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGG-- 159 (832)
Q Consensus 83 ~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-- 159 (832)
++.+.++++|++|+|++|.++ .+| .++.+++|++|+|++|.++ .+|..|.++++|++|+|++|++.+.+|..+..
T Consensus 97 p~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~ 174 (328)
T 4fcg_A 97 PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD 174 (328)
T ss_dssp CSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC
T ss_pred ChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhcc
Confidence 467888999999999999999 566 8999999999999999999 67889999999999999999998899988765
Q ss_pred -------CCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCC
Q 003307 160 -------LGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHD 232 (832)
Q Consensus 160 -------l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 232 (832)
+++|++|+|++|+++ .+|..+..+++|++|+|++|.+++ +|..+ ..+++|++|++++|.+.+.++..
T Consensus 175 ~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l---~~l~~L~~L~Ls~n~~~~~~p~~- 248 (328)
T 4fcg_A 175 ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAI---HHLPKLEELDLRGCTALRNYPPI- 248 (328)
T ss_dssp -CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGG---GGCTTCCEEECTTCTTCCBCCCC-
T ss_pred chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhh---ccCCCCCEEECcCCcchhhhHHH-
Confidence 999999999999998 778889999999999999999995 44443 45689999999999999888877
Q ss_pred CCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCC
Q 003307 233 GMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLE 300 (832)
Q Consensus 233 ~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~ 300 (832)
+..+++|+.|++++|.+.+.+| .+..+++|+.|+|++|++.+.+|..+ ..+++|+.+++..+.+.
T Consensus 249 -~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l--~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 249 -FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI--AQLPANCIILVPPHLQA 314 (328)
T ss_dssp -TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG--GGSCTTCEEECCGGGSC
T ss_pred -hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH--hhccCceEEeCCHHHHH
Confidence 8899999999999999999888 88999999999999999999999988 67888888888876654
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-30 Score=275.49 Aligned_cols=293 Identities=17% Similarity=0.199 Sum_probs=187.0
Q ss_pred CCCCCCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCcc
Q 003307 50 SDGCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGL 128 (832)
Q Consensus 50 ~~~c~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~ 128 (832)
+..|.|.|..+.|. ++++.. + +..+ .+.|+.|+|++|.+++..+ .|+.+++|++|+|++|.+++.
T Consensus 26 p~~c~c~l~~l~~~----------~~~l~~-l-p~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (330)
T 1xku_A 26 PFRCQCHLRVVQCS----------DLGLEK-V-PKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 91 (330)
T ss_dssp CTTCEEETTEEECT----------TSCCCS-C-CCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB
T ss_pred CCCCcCCCeEEEec----------CCCccc-c-CccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee
Confidence 34566667666664 333332 2 1222 2689999999999998888 899999999999999999998
Q ss_pred CcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCcc--ccCCCCC
Q 003307 129 IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSG--SLDLGLG 206 (832)
Q Consensus 129 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~--~~~~~~~ 206 (832)
.|..|.++++|++|+|++|+++ .+|..+. ++|++|++++|++++..+..|.++++|++|++++|.++. ..+.
T Consensus 92 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--- 165 (330)
T 1xku_A 92 SPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG--- 165 (330)
T ss_dssp CTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTT---
T ss_pred CHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChh---
Confidence 8999999999999999999998 4566554 789999999999998888899999999999999999863 2222
Q ss_pred CCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCCCCCChhhhhhC
Q 003307 207 DSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQES 285 (832)
Q Consensus 207 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~ 285 (832)
.+..+++|++|++++|.++. ++.. + .++|+.|++++|.+++..+ .+..+++|+.|+|++|++++..+..+ ..
T Consensus 166 ~~~~l~~L~~L~l~~n~l~~-l~~~--~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~ 238 (330)
T 1xku_A 166 AFQGMKKLSYIRIADTNITT-IPQG--L--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL--AN 238 (330)
T ss_dssp GGGGCTTCCEEECCSSCCCS-CCSS--C--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG--GG
T ss_pred hccCCCCcCEEECCCCcccc-CCcc--c--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhc--cC
Confidence 23344666666666666653 2221 1 1455555555555555444 44455555555555555543322222 12
Q ss_pred CCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCc
Q 003307 286 SMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNF 365 (832)
Q Consensus 286 ~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~ 365 (832)
++ +|+.|+|++|.
T Consensus 239 l~-------------------------------------------------------------------~L~~L~L~~N~ 251 (330)
T 1xku_A 239 TP-------------------------------------------------------------------HLRELHLNNNK 251 (330)
T ss_dssp ST-------------------------------------------------------------------TCCEEECCSSC
T ss_pred CC-------------------------------------------------------------------CCCEEECCCCc
Confidence 22 34444444444
Q ss_pred CCCCCcccccCCCCCCEEEccCCcCCCCcccccCC------CCCCCEEEccCCcccc--cCcccccCCCCCCeEeccCCc
Q 003307 366 LTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGT------YPELKVIDLSLNHLNG--FLLPSFFTSTKLTDLNLSGNN 437 (832)
Q Consensus 366 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~ 437 (832)
++ .+|..+..+++|++|++++|+|++..+..|.. .+.|+.|++++|.+.. ..|..|..+..|+.++|++|+
T Consensus 252 l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 252 LV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred Cc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 44 33444455555555555555555444444432 2566677777776643 445666667777777777764
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=278.57 Aligned_cols=266 Identities=19% Similarity=0.177 Sum_probs=178.2
Q ss_pred CCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeC
Q 003307 90 KMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDL 168 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 168 (832)
++|+.|+|++|.+.+..+ .|..+++|++|+|++|.+++..|..|.++++|++|+|++|+++ .+|..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence 689999999999998877 8999999999999999999888999999999999999999998 4565554 78999999
Q ss_pred cCCCCCCccchhhhcCCCCCEEECccCcCcc--ccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEcc
Q 003307 169 RANRFGGDIMHLLSQLGSVVHVDLSNNQFSG--SLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDAS 246 (832)
Q Consensus 169 ~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls 246 (832)
++|++++..+..|.++++|++|++++|.++. ..+..+ ..+ +|+.|++++|.+++ ++.. + .++|+.|+++
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---~~l-~L~~L~l~~n~l~~-l~~~--~--~~~L~~L~l~ 201 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF---DGL-KLNYLRISEAKLTG-IPKD--L--PETLNELHLD 201 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSS---CSC-CCSCCBCCSSBCSS-CCSS--S--CSSCSCCBCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccc---cCC-ccCEEECcCCCCCc-cCcc--c--cCCCCEEECC
Confidence 9999998888889999999999999998863 333322 223 66666666666654 2222 1 1456666666
Q ss_pred CCcccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccC
Q 003307 247 NNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSL 325 (832)
Q Consensus 247 ~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~ 325 (832)
+|.+++..+ .+..+++|+.|+|++|++++..+..+ ..++
T Consensus 202 ~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~--~~l~-------------------------------------- 241 (332)
T 2ft3_A 202 HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL--SFLP-------------------------------------- 241 (332)
T ss_dssp SSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG--GGCT--------------------------------------
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh--hCCC--------------------------------------
Confidence 666655544 45555555555555555554333222 1222
Q ss_pred CCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCC-----
Q 003307 326 PARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGT----- 400 (832)
Q Consensus 326 p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~----- 400 (832)
+|+.|+|++|.++ .+|..+..+++|++|++++|+|++..+..|..
T Consensus 242 -----------------------------~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 291 (332)
T 2ft3_A 242 -----------------------------TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291 (332)
T ss_dssp -----------------------------TCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCS
T ss_pred -----------------------------CCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccc
Confidence 3444444444444 34444555555666666666665544444433
Q ss_pred -CCCCCEEEccCCccc--ccCcccccCCCCCCeEeccCCc
Q 003307 401 -YPELKVIDLSLNHLN--GFLLPSFFTSTKLTDLNLSGNN 437 (832)
Q Consensus 401 -l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~ 437 (832)
.+.|+.|++++|.+. +..+..|..+++|+.|++++|+
T Consensus 292 ~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 245677777777766 5566667777777777777764
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-31 Score=283.87 Aligned_cols=247 Identities=26% Similarity=0.368 Sum_probs=151.4
Q ss_pred CCCCEEEcCCCCCcc--cCC-CCCCCCCCCEEECCC-CCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCE
Q 003307 90 KMLCNVSVSNNQLMG--NIT-DIGSIQSLEFLDLSH-NLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKY 165 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~--~~~-~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 165 (832)
.+++.|+|++|.+.+ .+| .++.+++|++|+|++ |.+++.+|..|+++++|++|+|++|.+++.+|..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 367778888888877 666 777788888888874 7777777777777888888888888877777777777777777
Q ss_pred eeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCC-CcCEEE
Q 003307 166 LDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFD-NLEVFD 244 (832)
Q Consensus 166 L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~ 244 (832)
|+|++|.+++.+|..+..+++|++|+|++|++++.+|..++. ++ +|+.|+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-----------------------------l~~~L~~L~ 180 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS-----------------------------FSKLFTSMT 180 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC-----------------------------CCTTCCEEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh-----------------------------hhhcCcEEE
Confidence 777777777777777777777777777777776655544332 22 344444
Q ss_pred ccCCcccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecc
Q 003307 245 ASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSG 323 (832)
Q Consensus 245 Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~ 323 (832)
+++|++++.+| .+..+. |+.|++++|++++..|..+
T Consensus 181 L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~------------------------------------------ 217 (313)
T 1ogq_A 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLF------------------------------------------ 217 (313)
T ss_dssp CCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGC------------------------------------------
T ss_pred CcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHH------------------------------------------
Confidence 44444443333 222222 3344444333332222221
Q ss_pred cCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCC
Q 003307 324 SLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPE 403 (832)
Q Consensus 324 ~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 403 (832)
.+++ +|+.|+|++|.+++.+|. +..+++|++|+|++|++++.+|..+..+++
T Consensus 218 ------~~l~---------------------~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 269 (313)
T 1ogq_A 218 ------GSDK---------------------NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269 (313)
T ss_dssp ------CTTS---------------------CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred ------hcCC---------------------CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcC
Confidence 1111 344444444444443333 445556666666666666666666666666
Q ss_pred CCEEEccCCcccccCcccccCCCCCCeEeccCCc
Q 003307 404 LKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNN 437 (832)
Q Consensus 404 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 437 (832)
|++|++++|++++.+|.. ..+++|+.|++++|+
T Consensus 270 L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 270 LHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 666666666666665554 556666666666665
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-29 Score=270.81 Aligned_cols=136 Identities=18% Similarity=0.126 Sum_probs=77.5
Q ss_pred cccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEecc
Q 003307 355 YVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLS 434 (832)
Q Consensus 355 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 434 (832)
+|++|++++|.+++..|..+..+++|++|+|++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|+|+
T Consensus 193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECC
Confidence 3455555555555555555555566666666666665555555555666666666666665 344555556666666666
Q ss_pred CCcccccCCcccccCCCCCcccCcccccEEEccCCcCcc--cCChhhhcCCCCCEEeCcCCc
Q 003307 435 GNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSG--RLLPGISKFHNLVYLNLSNNK 494 (832)
Q Consensus 435 ~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~ 494 (832)
+|++++..+..+..... ......|+.|++++|.+.. ..|..|..+.+++.++|++|+
T Consensus 272 ~N~i~~~~~~~f~~~~~---~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 272 NNNISAIGSNDFCPPGY---NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCCCCCCTTSSSCSSC---CTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcCCccChhhcCCccc---ccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 66665433322211100 0111247788888888863 556788889999999999985
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-33 Score=316.96 Aligned_cols=386 Identities=18% Similarity=0.112 Sum_probs=205.1
Q ss_pred CCCCEEEcCCCCCcccCC-C-CCCCCCCCEEECCCCCCCcc----CcccccCCCCCCEEEcccccccccCCCCC-CCCC-
Q 003307 90 KMLCNVSVSNNQLMGNIT-D-IGSIQSLEFLDLSHNLFHGL----IPSGIVSLKNLMLLNISSNSFEGTFPSGF-GGLG- 161 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~-~-~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~- 161 (832)
++|+.|||++|+++.... . +..+++|++|+|++|.+++. ++..+..+++|++|+|++|.+++..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 356667777776655433 2 55667777777777776642 35556666777777777777665333222 2233
Q ss_pred ---CCCEeeCcCCCCCC----ccchhhhcCCCCCEEECccCcCccccCCCCCC--CCCCCCccEEECCCCCCeecc----
Q 003307 162 ---KLKYLDLRANRFGG----DIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGD--SSFISSIQYLNISENSLVGEL---- 228 (832)
Q Consensus 162 ---~L~~L~L~~N~l~~----~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~--~~~l~~L~~L~L~~N~l~~~~---- 228 (832)
+|++|+|++|+++. .++..+..+++|++|+|++|.+++..+..+.. ....++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 57777777777763 34666677777777777777765332221111 111234555555555554321
Q ss_pred CCCCCCCCCCCcCEEEccCCcccccCC-Ccc-----ccccccEEEccccCCCCC----CChhhhhhCCCCCCEEECCCCC
Q 003307 229 FPHDGMPYFDNLEVFDASNNHLVGAIP-SFN-----FVFSLRILRLGSNQLSGS----LPVALLQESSMMLSELDLSLNQ 298 (832)
Q Consensus 229 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~-----~l~~L~~L~L~~N~l~~~----~p~~~~~~~~~~L~~L~L~~N~ 298 (832)
+.. +..+++|+.|++++|.+....+ .+. ..++|+.|++++|.+++. ++..+ ..++
T Consensus 163 ~~~--l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l--~~~~----------- 227 (461)
T 1z7x_W 163 ASV--LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV--ASKA----------- 227 (461)
T ss_dssp HHH--HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH--HHCT-----------
T ss_pred HHH--HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH--HhCC-----------
Confidence 111 2334555555555555543222 111 133555555555555432 12222 2234
Q ss_pred CCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCC----Ccccc
Q 003307 299 LEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGM----VPNQT 374 (832)
Q Consensus 299 l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~----~p~~~ 374 (832)
+|++|++++|++++.....+ .+.+.....+|++|++++|.++.. ++..+
T Consensus 228 -----------~L~~L~Ls~n~l~~~~~~~l----------------~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 280 (461)
T 1z7x_W 228 -----------SLRELALGSNKLGDVGMAEL----------------CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280 (461)
T ss_dssp -----------TCCEEECCSSBCHHHHHHHH----------------HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred -----------CccEEeccCCcCChHHHHHH----------------HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH
Confidence 44444454444432110000 000000111455555555555432 34445
Q ss_pred cCCCCCCEEEccCCcCCCCcccccC-----CCCCCCEEEccCCccccc----CcccccCCCCCCeEeccCCcccccCCcc
Q 003307 375 SQFLRLTSFKVSNNSLEGDLPAVLG-----TYPELKVIDLSLNHLNGF----LLPSFFTSTKLTDLNLSGNNFSGPLPLQ 445 (832)
Q Consensus 375 ~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 445 (832)
..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|+|++|++++..+..
T Consensus 281 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 360 (461)
T 1z7x_W 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360 (461)
T ss_dssp HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHH
Confidence 5566666666666666543332222 225677777777777654 3444556677777777777776543332
Q ss_pred cccCCCCCcccCcccccEEEccCCcCcc----cCChhhhcCCCCCEEeCcCCcCccc--------CCCCccCCCcEEEcC
Q 003307 446 EIQNNPSTGSTQNLSLTSLDLAYNSLSG----RLLPGISKFHNLVYLNLSNNKFEGS--------IPDGLPNGLKEFNVS 513 (832)
Q Consensus 446 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~g~--------ip~~~~~~L~~l~ls 513 (832)
+.... .....+|++|+|++|++++ .+|..+..+++|+.|||++|++++. +|... ..|+.|++.
T Consensus 361 l~~~l----~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~-~~L~~L~~~ 435 (461)
T 1z7x_W 361 LCQGL----GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG-CLLEQLVLY 435 (461)
T ss_dssp HHHHH----TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTT-CCCCEEECT
T ss_pred HHHHH----cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCC-cchhheeec
Confidence 22100 0001237788888888875 6677777788888888888887654 22211 357778877
Q ss_pred CCccccccC
Q 003307 514 FNNLSGVVP 522 (832)
Q Consensus 514 ~N~l~g~~p 522 (832)
++.+....+
T Consensus 436 ~~~~~~~~~ 444 (461)
T 1z7x_W 436 DIYWSEEME 444 (461)
T ss_dssp TCCCCHHHH
T ss_pred ccccCHHHH
Confidence 776655443
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-32 Score=308.63 Aligned_cols=360 Identities=19% Similarity=0.185 Sum_probs=228.5
Q ss_pred CCCCCEEECCCCCCCccCccc-ccCCCCCCEEEcccccccc----cCCCCCCCCCCCCEeeCcCCCCCCccchhh-hcCC
Q 003307 112 IQSLEFLDLSHNLFHGLIPSG-IVSLKNLMLLNISSNSFEG----TFPSGFGGLGKLKYLDLRANRFGGDIMHLL-SQLG 185 (832)
Q Consensus 112 l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l-~~l~ 185 (832)
+++|++|||++|+++...... +..+++|++|+|++|.++. .++..+..+++|++|+|++|.++...+..+ ..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 356888999999887654443 6778889999999888874 345667778888888888888876544443 3354
Q ss_pred ----CCCEEECccCcCcc----ccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCCCc
Q 003307 186 ----SVVHVDLSNNQFSG----SLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSF 257 (832)
Q Consensus 186 ----~L~~L~Ls~N~l~~----~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 257 (832)
+|++|+|++|.++. .++..+. .+++|++|++++|.+++..+.. +... ..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~---~~~~L~~L~Ls~n~i~~~~~~~--l~~~------------------l~ 138 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLR---TLPTLQELHLSDNLLGDAGLQL--LCEG------------------LL 138 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTT---SCTTCCEEECCSSBCHHHHHHH--HHHH------------------HT
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHc---cCCceeEEECCCCcCchHHHHH--HHHH------------------Hh
Confidence 57777777777762 2232222 2345555555555554321110 0000 01
Q ss_pred cccccccEEEccccCCCCCCChhhhh--hCCCCCCEEECCCCCCCCccCcc-------CCCCCCEEEecCCeecccCCCC
Q 003307 258 NFVFSLRILRLGSNQLSGSLPVALLQ--ESSMMLSELDLSLNQLEGPVGSI-------TSATLKKVNLSSNKLSGSLPAR 328 (832)
Q Consensus 258 ~~l~~L~~L~L~~N~l~~~~p~~~~~--~~~~~L~~L~L~~N~l~~~~~~~-------~~~~L~~L~L~~N~l~~~~p~~ 328 (832)
...++|++|++++|++++.....+.. ..+++|++|++++|.++...... ...+|++|++++|.+++.....
T Consensus 139 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 218 (461)
T 1z7x_W 139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH
T ss_pred cCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH
Confidence 11234445555555444322111100 22344555555555544321100 1236667777777665421000
Q ss_pred CCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCC-----cccccCCCCCCEEEccCCcCCCC----cccccC
Q 003307 329 VGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMV-----PNQTSQFLRLTSFKVSNNSLEGD----LPAVLG 399 (832)
Q Consensus 329 l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~ 399 (832)
++..+...++|++|++++|.+++.. +..+..+++|++|++++|.+++. ++..+.
T Consensus 219 -----------------l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 281 (461)
T 1z7x_W 219 -----------------LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281 (461)
T ss_dssp -----------------HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred -----------------HHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh
Confidence 0111112236888888888876542 33344689999999999999864 577788
Q ss_pred CCCCCCEEEccCCcccccCcccccC-----CCCCCeEeccCCccccc----CCcccccCCCCCcccCcccccEEEccCCc
Q 003307 400 TYPELKVIDLSLNHLNGFLLPSFFT-----STKLTDLNLSGNNFSGP----LPLQEIQNNPSTGSTQNLSLTSLDLAYNS 470 (832)
Q Consensus 400 ~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~----~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~ 470 (832)
.+++|++|++++|.+++..+..+.. .++|+.|+|++|.+++. ++..+..+. +|++|||++|+
T Consensus 282 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~---------~L~~L~Ls~n~ 352 (461)
T 1z7x_W 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR---------FLLELQISNNR 352 (461)
T ss_dssp HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS---------SCCEEECCSSB
T ss_pred hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC---------CccEEEccCCc
Confidence 8999999999999998765544433 37999999999999865 222222222 49999999999
Q ss_pred CcccCChhhhc-----CCCCCEEeCcCCcCcc----cCCCCcc--CCCcEEEcCCCccccc
Q 003307 471 LSGRLLPGISK-----FHNLVYLNLSNNKFEG----SIPDGLP--NGLKEFNVSFNNLSGV 520 (832)
Q Consensus 471 l~~~~p~~l~~-----l~~L~~L~Ls~N~l~g----~ip~~~~--~~L~~l~ls~N~l~g~ 520 (832)
+++..+..+.. .++|+.|+|++|.+++ .+|..+. ++|++|++++|++++.
T Consensus 353 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 353 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 99876666654 6799999999999986 6666654 7899999999999865
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=261.80 Aligned_cols=233 Identities=22% Similarity=0.227 Sum_probs=181.7
Q ss_pred CCCCCCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCcc
Q 003307 50 SDGCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGL 128 (832)
Q Consensus 50 ~~~c~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~ 128 (832)
++.|.|.|.+|.|+...++++ |..+ .++|++|+|++|.++...+ .|..+++|++|+|++|.++..
T Consensus 2 P~~C~C~~~~l~c~~~~l~~i------------p~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 67 (306)
T 2z66_A 2 PSRCSCSGTEIRCNSKGLTSV------------PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67 (306)
T ss_dssp CTTCEEETTEEECCSSCCSSC------------CSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE
T ss_pred cCCCeeCCCEEEcCCCCcccC------------CCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc
Confidence 457888999998874433322 1112 2689999999999997666 589999999999999999844
Q ss_pred --CcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccc-hhhhcCCCCCEEECccCcCccccCCCC
Q 003307 129 --IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIM-HLLSQLGSVVHVDLSNNQFSGSLDLGL 205 (832)
Q Consensus 129 --~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 205 (832)
.+..+..+++|++|+|++|.++. +|..|.++++|++|+|++|++++..+ ..+..+++|++|++++|.+++..+..+
T Consensus 68 ~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 146 (306)
T 2z66_A 68 GCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146 (306)
T ss_dssp EEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT
T ss_pred cCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc
Confidence 36778889999999999999984 67779999999999999999987665 678899999999999999987666554
Q ss_pred CCCCCCCCccEEECCCCCCee-ccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCCCCCChhhhh
Q 003307 206 GDSSFISSIQYLNISENSLVG-ELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQ 283 (832)
Q Consensus 206 ~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 283 (832)
. .+++|++|++++|.+++ ..+.. +..+++|+.|++++|.+++..| .+..+++|+.|+|++|++++..+..+
T Consensus 147 ~---~l~~L~~L~l~~n~l~~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-- 219 (306)
T 2z66_A 147 N---GLSSLEVLKMAGNSFQENFLPDI--FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY-- 219 (306)
T ss_dssp T---TCTTCCEEECTTCEEGGGEECSC--CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG--
T ss_pred c---cCcCCCEEECCCCccccccchhH--HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc--
Confidence 4 45788899999998876 34544 7788888888888888888766 77888888888888888885544444
Q ss_pred hCCCCCCEEECCCCCCCCccC
Q 003307 284 ESSMMLSELDLSLNQLEGPVG 304 (832)
Q Consensus 284 ~~~~~L~~L~L~~N~l~~~~~ 304 (832)
..+++|+.|++++|++++..+
T Consensus 220 ~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 220 KCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp TTCTTCCEEECTTSCCCBCSS
T ss_pred cCcccCCEeECCCCCCcccCH
Confidence 456667777777776665444
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-28 Score=265.24 Aligned_cols=260 Identities=19% Similarity=0.176 Sum_probs=150.2
Q ss_pred CCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECc
Q 003307 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLS 193 (832)
Q Consensus 114 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls 193 (832)
+|++|+|++|.|++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 45555555555554444455555555555555555555555555555555555555555555444445555555555555
Q ss_pred cCcCccccCCCCCCCCCCCCccEEECCCCC-CeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEcccc
Q 003307 194 NNQFSGSLDLGLGDSSFISSIQYLNISENS-LVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSN 271 (832)
Q Consensus 194 ~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N 271 (832)
+|++++ +|. ...+..+++|++|++++|. +....+.. +..+++|+.|++++|.+++..| .+..+++|++|++++|
T Consensus 133 ~n~l~~-l~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 133 GNPYKT-LGE-TSLFSHLTKLQILRVGNMDTFTKIQRKD--FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp TCCCSS-SCS-SCSCTTCTTCCEEEEEESSSCCEECTTT--TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred CCCCcc-cCc-hhhhccCCCCcEEECCCCccccccCHHH--ccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 555552 111 0112334566666666653 33322223 6667777777777777777666 6777778888888888
Q ss_pred CCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhcc
Q 003307 272 QLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQN 351 (832)
Q Consensus 272 ~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~ 351 (832)
++. .+|..++ ..+++|+.|++++|.+++... ..+....
T Consensus 209 ~l~-~~~~~~~-~~~~~L~~L~L~~n~l~~~~~----------------------~~l~~~~------------------ 246 (353)
T 2z80_A 209 QHI-LLLEIFV-DVTSSVECLELRDTDLDTFHF----------------------SELSTGE------------------ 246 (353)
T ss_dssp CST-THHHHHH-HHTTTEEEEEEESCBCTTCCC----------------------C------------------------
T ss_pred ccc-cchhhhh-hhcccccEEECCCCccccccc----------------------ccccccc------------------
Confidence 875 4554443 234556666666665554221 1110000
Q ss_pred ccCcccEEEcCCCcCCC----CCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCc
Q 003307 352 WGNYVEDIHLSSNFLTG----MVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLL 419 (832)
Q Consensus 352 ~~~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 419 (832)
....++.++|+++.+++ .+|..+..+++|++|++++|+++...+..|..+++|++|++++|.+.+..+
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 00124444444444443 356677888889999999998884433445888899999999998887543
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.6e-28 Score=261.31 Aligned_cols=270 Identities=22% Similarity=0.197 Sum_probs=193.2
Q ss_pred CCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCcccc
Q 003307 122 HNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSL 201 (832)
Q Consensus 122 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 201 (832)
+|.++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..
T Consensus 40 ~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 116 (353)
T 2z80_A 40 SGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116 (353)
T ss_dssp STTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC
T ss_pred CCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC
Confidence 33444 3344443 58999999999999887779999999999999999999988999999999999999999998543
Q ss_pred CCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCc-ccccCC-CccccccccEEEccccCCCCCCCh
Q 003307 202 DLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNH-LVGAIP-SFNFVFSLRILRLGSNQLSGSLPV 279 (832)
Q Consensus 202 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~ 279 (832)
+.. +..+++|++|++++|.+++ ++....+..+++|+.|++++|. +.+..+ .+..+++|++|++++|++++..|.
T Consensus 117 ~~~---~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 117 SSW---FKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp HHH---HTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred HhH---hCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 322 3456899999999999984 4432348899999999999994 666656 789999999999999999977676
Q ss_pred hhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEE
Q 003307 280 ALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDI 359 (832)
Q Consensus 280 ~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L 359 (832)
.+ ..+++|++|++++|.++. .....+...++|+.|
T Consensus 193 ~l--~~l~~L~~L~l~~n~l~~-------------------------------------------~~~~~~~~~~~L~~L 227 (353)
T 2z80_A 193 SL--KSIQNVSHLILHMKQHIL-------------------------------------------LLEIFVDVTSSVECL 227 (353)
T ss_dssp TT--TTCSEEEEEEEECSCSTT-------------------------------------------HHHHHHHHTTTEEEE
T ss_pred HH--hccccCCeecCCCCcccc-------------------------------------------chhhhhhhcccccEE
Confidence 65 344444444444444321 112222223356666
Q ss_pred EcCCCcCCCCCccccc---CCCCCCEEEccCCcCCC----CcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEe
Q 003307 360 HLSSNFLTGMVPNQTS---QFLRLTSFKVSNNSLEG----DLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLN 432 (832)
Q Consensus 360 ~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 432 (832)
++++|.+++..+..+. ....++.++++++.+++ .+|..+..+++|+.|++++|+++...+..|..+++|++|+
T Consensus 228 ~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 307 (353)
T 2z80_A 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIW 307 (353)
T ss_dssp EEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEE
Confidence 6666666655443332 34567777777777765 3566677777777777777777754444456777777777
Q ss_pred ccCCcccccCC
Q 003307 433 LSGNNFSGPLP 443 (832)
Q Consensus 433 Ls~N~l~~~~p 443 (832)
|++|.+++..|
T Consensus 308 L~~N~~~~~~~ 318 (353)
T 2z80_A 308 LHTNPWDCSCP 318 (353)
T ss_dssp CCSSCBCCCHH
T ss_pred eeCCCccCcCC
Confidence 77777765543
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-27 Score=262.86 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=68.5
Q ss_pred cccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEecc
Q 003307 355 YVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLS 434 (832)
Q Consensus 355 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 434 (832)
+|+.|+|++|.|++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|+
T Consensus 219 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298 (452)
T ss_dssp TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECC
T ss_pred cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEcc
Confidence 45666666666666667777777888888888888887777788888888888888888888777778888889999999
Q ss_pred CCccccc
Q 003307 435 GNNFSGP 441 (832)
Q Consensus 435 ~N~l~~~ 441 (832)
+|.+...
T Consensus 299 ~Np~~Cd 305 (452)
T 3zyi_A 299 HNPWNCD 305 (452)
T ss_dssp SSCEECS
T ss_pred CCCcCCC
Confidence 9887643
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=260.05 Aligned_cols=229 Identities=21% Similarity=0.225 Sum_probs=145.2
Q ss_pred CCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeC
Q 003307 90 KMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDL 168 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 168 (832)
++++.|+|++|++.+..+ .|.++++|++|+|++|.|+++.+..|.++++|++|+|++|+|+...+..|.++++|++|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 466677777777766665 6667777777777777776666666777777777777777776555556666666777766
Q ss_pred cCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCC
Q 003307 169 RANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNN 248 (832)
Q Consensus 169 ~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 248 (832)
++|+++...+..|.++++|++|+|++|+..+.++ + .
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~---------------------------~-~---------------- 179 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS---------------------------E-G---------------- 179 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC---------------------------T-T----------------
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeC---------------------------c-c----------------
Confidence 6666665555555555555555555432221111 1 0
Q ss_pred cccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCC
Q 003307 249 HLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPAR 328 (832)
Q Consensus 249 ~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~ 328 (832)
.|..+++|++|+|++|+++ .+|. + ..+
T Consensus 180 -------~~~~l~~L~~L~L~~n~l~-~~~~-~--~~l------------------------------------------ 206 (440)
T 3zyj_A 180 -------AFEGLSNLRYLNLAMCNLR-EIPN-L--TPL------------------------------------------ 206 (440)
T ss_dssp -------TTTTCSSCCEEECTTSCCS-SCCC-C--TTC------------------------------------------
T ss_pred -------hhhcccccCeecCCCCcCc-cccc-c--CCC------------------------------------------
Confidence 2333444445555555443 2221 0 000
Q ss_pred CCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEE
Q 003307 329 VGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVID 408 (832)
Q Consensus 329 l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 408 (832)
.+|+.|+|++|.|++..|..|.++++|+.|+|++|+|++..+..|..+++|+.|+
T Consensus 207 -------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 261 (440)
T 3zyj_A 207 -------------------------IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261 (440)
T ss_dssp -------------------------SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEE
T ss_pred -------------------------cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEE
Confidence 0355555555555555666677777777777777777777777777888888888
Q ss_pred ccCCcccccCcccccCCCCCCeEeccCCcccc
Q 003307 409 LSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSG 440 (832)
Q Consensus 409 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 440 (832)
|++|+|++..+..|..+++|+.|+|++|.+..
T Consensus 262 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 262 LAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 88888887777777888888888888888764
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=245.83 Aligned_cols=249 Identities=21% Similarity=0.199 Sum_probs=139.9
Q ss_pred CEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCc--cchhhhcCCCCCEEECc
Q 003307 116 EFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGD--IMHLLSQLGSVVHVDLS 193 (832)
Q Consensus 116 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~l~~L~~L~Ls 193 (832)
+.++++++.++.+ |..+. ++|++|+|++|.++...+..|.++++|++|+|++|+++.. .+..+..+++|++|+|+
T Consensus 10 ~~l~c~~~~l~~i-p~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSV-PTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSC-CSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccC-CCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 3455555555532 33332 4666666666666644444566667777777777766532 24555566666666666
Q ss_pred cCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccC
Q 003307 194 NNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQ 272 (832)
Q Consensus 194 ~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~ 272 (832)
+|.+++ +|..+ ..+++|++|++++|.+++... ...+..+++|+.|++++|.+.+..+ .+..+++|++|++
T Consensus 87 ~n~i~~-l~~~~---~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l---- 157 (306)
T 2z66_A 87 FNGVIT-MSSNF---LGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM---- 157 (306)
T ss_dssp SCSEEE-EEEEE---ETCTTCCEEECTTSEEESSTT-TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC----
T ss_pred CCcccc-Chhhc---CCCCCCCEEECCCCccccccc-chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC----
Confidence 666652 22211 122344444444444332111 0113344444444444444443333 2233333333333
Q ss_pred CCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecc-cCCCCCCCCCEEecCCCCCcCcchhhcc
Q 003307 273 LSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSG-SLPARVGHCTIVDLSNNRLSGDLSRMQN 351 (832)
Q Consensus 273 l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~-~~p~~l~~l~~L~L~~N~l~~~~~~~~~ 351 (832)
++|.+++ .+|..+..++
T Consensus 158 --------------------------------------------~~n~l~~~~~~~~~~~l~------------------ 175 (306)
T 2z66_A 158 --------------------------------------------AGNSFQENFLPDIFTELR------------------ 175 (306)
T ss_dssp --------------------------------------------TTCEEGGGEECSCCTTCT------------------
T ss_pred --------------------------------------------CCCccccccchhHHhhCc------------------
Confidence 3333332 2233333332
Q ss_pred ccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCC-CCCe
Q 003307 352 WGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTST-KLTD 430 (832)
Q Consensus 352 ~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~ 430 (832)
+|+.|+|++|.+++..|..+..+++|++|+|++|++++..+..+..+++|++|++++|++++..+..+..++ +|+.
T Consensus 176 ---~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~ 252 (306)
T 2z66_A 176 ---NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252 (306)
T ss_dssp ---TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCE
T ss_pred ---CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCE
Confidence 577777777777777777777777788888888887776666777778888888888888777777777763 7777
Q ss_pred EeccCCccccc
Q 003307 431 LNLSGNNFSGP 441 (832)
Q Consensus 431 L~Ls~N~l~~~ 441 (832)
|+|++|.+++.
T Consensus 253 L~L~~N~~~~~ 263 (306)
T 2z66_A 253 LNLTQNDFACT 263 (306)
T ss_dssp EECTTCCEECS
T ss_pred EEccCCCeecc
Confidence 77777777654
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-26 Score=255.41 Aligned_cols=61 Identities=13% Similarity=0.147 Sum_probs=36.4
Q ss_pred cccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCccc
Q 003307 355 YVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLN 415 (832)
Q Consensus 355 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 415 (832)
+|+.|+|++|.+++..+..|.++++|+.|+|++|+|++..+..+..+++|+.|+|++|.+.
T Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 4555666666666555555666666666666666666555555555666666666666554
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=244.34 Aligned_cols=252 Identities=21% Similarity=0.161 Sum_probs=204.5
Q ss_pred EEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEccc
Q 003307 68 TSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISS 146 (832)
Q Consensus 68 ~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 146 (832)
+.+++++.++.. + |. .-.++|+.|+|++|.+++..+ .|..+++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus 14 ~~~~c~~~~l~~-i-p~--~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQA-V-PV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSS-C-CT--TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCccc-C-Cc--CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 456666666653 2 11 234689999999999999887 799999999999999999999899999999999999999
Q ss_pred cc-ccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCe
Q 003307 147 NS-FEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLV 225 (832)
Q Consensus 147 N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 225 (832)
|. ++...|..|.++++|++|+|++|++++..+..+.++++|++|++++|.+++..+..+ ..+++|+.|++++|.++
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF---RDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTTCCEEECCSSCCC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh---ccCCCccEEECCCCccc
Confidence 97 887778999999999999999999999989999999999999999999986544434 45689999999999998
Q ss_pred eccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccC
Q 003307 226 GELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVG 304 (832)
Q Consensus 226 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~ 304 (832)
+..+.. +..+++|+.|++++|.+++..| .+..+++|+.|++++|++++..+..+ ..+++|+.|++++|.+....+
T Consensus 167 ~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 167 SVPERA--FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL--APLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp EECTTT--TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH--TTCTTCCEEECCSSCEECSGG
T ss_pred ccCHHH--hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHc--ccCcccCEEeccCCCccCCCC
Confidence 655444 8889999999999999998877 88899999999999999996444445 567889999999998876443
Q ss_pred ccC-CCCCCEEEecCCeecccCCCCCC
Q 003307 305 SIT-SATLKKVNLSSNKLSGSLPARVG 330 (832)
Q Consensus 305 ~~~-~~~L~~L~L~~N~l~~~~p~~l~ 330 (832)
... ...++.+....+.+.+..|..+.
T Consensus 243 ~~~~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 243 ARPLWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp GHHHHHHHHHCCSEECCCBEEESGGGT
T ss_pred cHHHHHHHHhcccccCccccCCchHhC
Confidence 211 12344444555666666665443
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-29 Score=291.80 Aligned_cols=428 Identities=15% Similarity=0.114 Sum_probs=276.5
Q ss_pred CCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCC---cccCC-CCC------------CCCCCCEEE
Q 003307 56 NWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQL---MGNIT-DIG------------SIQSLEFLD 119 (832)
Q Consensus 56 ~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l---~~~~~-~~~------------~l~~L~~L~ 119 (832)
.|.++.+.... .+.+.+. . ...++..+..+++|+.|+|+++.. .+.+| .++ .+++|++|+
T Consensus 43 ~W~~~~~~~~~--~l~~~~~-~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~ 118 (592)
T 3ogk_B 43 RWFKIDSETRE--HVTMALC-Y-TATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVH 118 (592)
T ss_dssp HHHHHHHHHCC--EEEESCG-G-GSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEE
T ss_pred HHHHhhhcccc--EEEEeec-c-ccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEE
Confidence 68777653222 2222221 1 122234556788899999987543 12333 333 688999999
Q ss_pred CCCCCCCccCcccccCC--CCCCEEEccccc-ccc-cCCCCCCCCCCCCEeeCcCCCCCCc----cchhhhcCCCCCEEE
Q 003307 120 LSHNLFHGLIPSGIVSL--KNLMLLNISSNS-FEG-TFPSGFGGLGKLKYLDLRANRFGGD----IMHLLSQLGSVVHVD 191 (832)
Q Consensus 120 Ls~N~l~~~~p~~~~~l--~~L~~L~Ls~N~-l~~-~~p~~~~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~ 191 (832)
|++|.+++..+..+..+ .+|++|+|++|. ++. .++....++++|++|+|++|.+++. ++..+..+++|++|+
T Consensus 119 L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~ 198 (592)
T 3ogk_B 119 FRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLN 198 (592)
T ss_dssp EESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEE
T ss_pred eeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEE
Confidence 99998887766666653 349999998886 221 1222234788999999999988765 455667889999999
Q ss_pred CccCcCccccCCCCC-CCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCccc---ccCC-CccccccccEE
Q 003307 192 LSNNQFSGSLDLGLG-DSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLV---GAIP-SFNFVFSLRIL 266 (832)
Q Consensus 192 Ls~N~l~~~~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~-~~~~l~~L~~L 266 (832)
+++|.+++.-...+. .+..+++|+.|++++|.+.+ ++.. +..+++|+.|+++.+... +..+ .+..+++|+.|
T Consensus 199 L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L 275 (592)
T 3ogk_B 199 FYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGF--FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL 275 (592)
T ss_dssp CTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHH--HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEE
T ss_pred eeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHH--HhhhhHHHhhcccccccccchHHHHHHhhcccccccc
Confidence 999988622111111 01235788999999988875 3333 667888999988864332 1112 56777888888
Q ss_pred EccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccC---ccCCCCCCEEEecCCeeccc-CC---CCCCCCCEEecC-
Q 003307 267 RLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVG---SITSATLKKVNLSSNKLSGS-LP---ARVGHCTIVDLS- 338 (832)
Q Consensus 267 ~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~---~~~~~~L~~L~L~~N~l~~~-~p---~~l~~l~~L~L~- 338 (832)
+++++... .+|..+ ..+++|++|++++|.+++... ....++|+.|+++ +.+.+. ++ ..+.+|+.|+++
T Consensus 276 ~l~~~~~~-~l~~~~--~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 276 GLSYMGPN-EMPILF--PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp EETTCCTT-TGGGGG--GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred Cccccchh-HHHHHH--hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeec
Confidence 88876433 555544 456788899998888764332 2345688888888 444321 11 234678888888
Q ss_pred ----------CCCCcCc-chhhccccCcccEEEcCCCcCCCCCcccccC-CCCCCEEEcc----CCcCCCC-----cccc
Q 003307 339 ----------NNRLSGD-LSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQ-FLRLTSFKVS----NNSLEGD-----LPAV 397 (832)
Q Consensus 339 ----------~N~l~~~-~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls----~N~l~~~-----~p~~ 397 (832)
.|.+++. +..+...+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++. ++..
T Consensus 352 g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~ 431 (592)
T 3ogk_B 352 GADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL 431 (592)
T ss_dssp CCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH
T ss_pred CccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH
Confidence 3566543 2333444567888888888888766666655 7888888886 6777763 4444
Q ss_pred cCCCCCCCEEEccCC--cccccCccccc-CCCCCCeEeccCCcccccC-CcccccCCCCCcccCcccccEEEccCCcCcc
Q 003307 398 LGTYPELKVIDLSLN--HLNGFLLPSFF-TSTKLTDLNLSGNNFSGPL-PLQEIQNNPSTGSTQNLSLTSLDLAYNSLSG 473 (832)
Q Consensus 398 ~~~l~~L~~L~Ls~N--~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~-p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 473 (832)
+..+++|+.|++++| .+++..+..+. .+++|+.|+|++|++++.. +.....+ .+|++|+|++|.+++
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~---------~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGC---------PNLQKLEMRGCCFSE 502 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCC---------TTCCEEEEESCCCBH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcC---------cccCeeeccCCCCcH
Confidence 666888888888754 36655444444 3788888888888876522 2111112 248888888888875
Q ss_pred cC-ChhhhcCCCCCEEeCcCCcCcccCCCCc
Q 003307 474 RL-LPGISKFHNLVYLNLSNNKFEGSIPDGL 503 (832)
Q Consensus 474 ~~-p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 503 (832)
.. +..+..+++|+.|+|++|+++..-...+
T Consensus 503 ~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l 533 (592)
T 3ogk_B 503 RAIAAAVTKLPSLRYLWVQGYRASMTGQDLM 533 (592)
T ss_dssp HHHHHHHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred HHHHHHHHhcCccCeeECcCCcCCHHHHHHH
Confidence 53 3344678888888888888876533333
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=257.76 Aligned_cols=263 Identities=25% Similarity=0.255 Sum_probs=150.0
Q ss_pred CCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcC
Q 003307 91 MLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRA 170 (832)
Q Consensus 91 ~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 170 (832)
+++.|++++|.++..+..+. ++|++|+|++|.|+.+ |. .+++|++|+|++|+|++ +|. .+++|++|+|++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECS
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcC
Confidence 46777777777774333454 7888888888888744 43 46788888888888874 454 567788888888
Q ss_pred CCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcc
Q 003307 171 NRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHL 250 (832)
Q Consensus 171 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 250 (832)
|++++... .+++|++|++++|++++ +|.. +++|++|++++|.+++ ++. .+.+|+.|++++|.+
T Consensus 111 N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~------l~~L~~L~Ls~N~l~~-l~~-----~~~~L~~L~L~~N~l 173 (622)
T 3g06_A 111 NPLTHLPA----LPSGLCKLWIFGNQLTS-LPVL------PPGLQELSVSDNQLAS-LPA-----LPSELCKLWAYNNQL 173 (622)
T ss_dssp CCCCCCCC----CCTTCCEEECCSSCCSC-CCCC------CTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCC
T ss_pred CcCCCCCC----CCCCcCEEECCCCCCCc-CCCC------CCCCCEEECcCCcCCC-cCC-----ccCCCCEEECCCCCC
Confidence 88775433 45677777777777763 2321 2556666666665543 111 123455555555555
Q ss_pred cccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCC
Q 003307 251 VGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVG 330 (832)
Q Consensus 251 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~ 330 (832)
++ +| ..+++|+.|++++|++++ +|.. . .+|+.|++++|.++ .+|..+.
T Consensus 174 ~~-l~--~~~~~L~~L~Ls~N~l~~-l~~~-----~----------------------~~L~~L~L~~N~l~-~l~~~~~ 221 (622)
T 3g06_A 174 TS-LP--MLPSGLQELSVSDNQLAS-LPTL-----P----------------------SELYKLWAYNNRLT-SLPALPS 221 (622)
T ss_dssp SC-CC--CCCTTCCEEECCSSCCSC-CCCC-----C----------------------TTCCEEECCSSCCS-SCCCCCT
T ss_pred CC-Cc--ccCCCCcEEECCCCCCCC-CCCc-----c----------------------chhhEEECcCCccc-ccCCCCC
Confidence 43 22 223444444444444442 2211 1 23444444444443 2222222
Q ss_pred CCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEcc
Q 003307 331 HCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLS 410 (832)
Q Consensus 331 ~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 410 (832)
+|+.|+|++|.|++ +| ..+++|+.|+|++|+|+ .+|. .+++|+.|+|+
T Consensus 222 ------------------------~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls 269 (622)
T 3g06_A 222 ------------------------GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVY 269 (622)
T ss_dssp ------------------------TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECC
T ss_pred ------------------------CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCC
Confidence 45555555555554 23 33456666666666666 3343 44566666666
Q ss_pred CCcccccCcccccCCCCCCeEeccCCcccccCCcc
Q 003307 411 LNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQ 445 (832)
Q Consensus 411 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 445 (832)
+|+|+ .+|..+..+++|+.|+|++|.+++.+|..
T Consensus 270 ~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 270 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp SSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred CCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence 66666 34556666666666666666666655543
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-26 Score=249.87 Aligned_cols=144 Identities=17% Similarity=0.201 Sum_probs=96.1
Q ss_pred CCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEEC
Q 003307 113 QSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDL 192 (832)
Q Consensus 113 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 192 (832)
+++++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|+++++|++|+|++|+++ .+|..+.++++|++|+|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 55666666666666 44555666667777777777766 56666777777777777777776 55666777777777777
Q ss_pred ccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEcccc
Q 003307 193 SNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSN 271 (832)
Q Consensus 193 s~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N 271 (832)
++|++.+.+|..++.. . ... .+..+++|+.|++++|.++ .+| .+..+++|++|+|++|
T Consensus 158 ~~n~~~~~~p~~~~~~---------~---------~~~--~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N 216 (328)
T 4fcg_A 158 RACPELTELPEPLAST---------D---------ASG--EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS 216 (328)
T ss_dssp EEETTCCCCCSCSEEE---------C----------CC--CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESS
T ss_pred CCCCCccccChhHhhc---------c---------chh--hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCC
Confidence 7776666666544321 0 011 1556778888888888887 455 7788888888888888
Q ss_pred CCCCCCChhh
Q 003307 272 QLSGSLPVAL 281 (832)
Q Consensus 272 ~l~~~~p~~~ 281 (832)
++++ +|..+
T Consensus 217 ~l~~-l~~~l 225 (328)
T 4fcg_A 217 PLSA-LGPAI 225 (328)
T ss_dssp CCCC-CCGGG
T ss_pred CCCc-Cchhh
Confidence 8873 55444
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=250.22 Aligned_cols=108 Identities=17% Similarity=0.177 Sum_probs=90.0
Q ss_pred cccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEecc
Q 003307 355 YVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLS 434 (832)
Q Consensus 355 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 434 (832)
+|+.|+|++|.++.. | .+..+++|++|+|++|+|++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|+
T Consensus 186 ~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 263 (440)
T 3zyj_A 186 NLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263 (440)
T ss_dssp SCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECT
T ss_pred ccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECC
Confidence 455666666666533 3 37788999999999999999889999999999999999999999999999999999999999
Q ss_pred CCcccccCCcccccCCCCCcccCcccccEEEccCCcCcc
Q 003307 435 GNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSG 473 (832)
Q Consensus 435 ~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 473 (832)
+|++++..+..+.... +|+.|+|++|.+..
T Consensus 264 ~N~l~~~~~~~~~~l~---------~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 264 HNNLTLLPHDLFTPLH---------HLERIHLHHNPWNC 293 (440)
T ss_dssp TSCCCCCCTTTTSSCT---------TCCEEECCSSCEEC
T ss_pred CCCCCccChhHhcccc---------CCCEEEcCCCCccC
Confidence 9999965544333322 49999999999975
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-25 Score=255.70 Aligned_cols=269 Identities=24% Similarity=0.268 Sum_probs=183.9
Q ss_pred CCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEEC
Q 003307 113 QSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDL 192 (832)
Q Consensus 113 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 192 (832)
.+++.|++++|.|+ .+|..+. ++|++|+|++|.|+. +|. .+++|++|+|++|+|++... .+++|++|+|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV----LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence 46899999999999 5576665 799999999999994 555 57899999999999885433 6788888888
Q ss_pred ccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCCCccccccccEEEccccC
Q 003307 193 SNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQ 272 (832)
Q Consensus 193 s~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~ 272 (832)
++|.+++. |. .+++|+.|++++|++++ ++.. +++|+.|++++|.+++
T Consensus 109 s~N~l~~l-~~------~l~~L~~L~L~~N~l~~-lp~~-----l~~L~~L~Ls~N~l~~-------------------- 155 (622)
T 3g06_A 109 FSNPLTHL-PA------LPSGLCKLWIFGNQLTS-LPVL-----PPGLQELSVSDNQLAS-------------------- 155 (622)
T ss_dssp CSCCCCCC-CC------CCTTCCEEECCSSCCSC-CCCC-----CTTCCEEECCSSCCSC--------------------
T ss_pred cCCcCCCC-CC------CCCCcCEEECCCCCCCc-CCCC-----CCCCCEEECcCCcCCC--------------------
Confidence 88888742 22 23556666666666543 2211 2444444444444443
Q ss_pred CCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhccc
Q 003307 273 LSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNW 352 (832)
Q Consensus 273 l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~ 352 (832)
+|. ...+|+.|++++|.+++.. ....+|+.|++++|++++ +|..+
T Consensus 156 ----l~~-----~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~~-l~~~~----------------------- 200 (622)
T 3g06_A 156 ----LPA-----LPSELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLAS-LPTLP----------------------- 200 (622)
T ss_dssp ----CCC-----CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCCCC-----------------------
T ss_pred ----cCC-----ccCCCCEEECCCCCCCCCc--ccCCCCcEEECCCCCCCC-CCCcc-----------------------
Confidence 221 1123444444444443311 112344444444444442 22211
Q ss_pred cCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEe
Q 003307 353 GNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLN 432 (832)
Q Consensus 353 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 432 (832)
.+|+.|++++|.++. +|. .+++|+.|+|++|+|++ +| ..+++|+.|++++|+|+.+ |. .+++|+.|+
T Consensus 201 -~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~l-p~---~~~~L~~L~ 267 (622)
T 3g06_A 201 -SELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSL-PM---LPSGLLSLS 267 (622)
T ss_dssp -TTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEE
T ss_pred -chhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcC-Cc---ccccCcEEe
Confidence 267888888888874 343 24789999999999996 55 4568999999999999964 43 578999999
Q ss_pred ccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCC
Q 003307 433 LSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFH 483 (832)
Q Consensus 433 Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~ 483 (832)
|++|+|+ .+|..+.... +|+.|+|++|.+++.+|..+..++
T Consensus 268 Ls~N~L~-~lp~~l~~l~---------~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 268 VYRNQLT-RLPESLIHLS---------SETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CCSSCCC-SCCGGGGGSC---------TTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCCCCCC-cCCHHHhhcc---------ccCEEEecCCCCCCcCHHHHHhcc
Confidence 9999999 6787665544 499999999999999998887765
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.7e-26 Score=239.42 Aligned_cols=255 Identities=16% Similarity=0.130 Sum_probs=145.2
Q ss_pred CEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCC
Q 003307 93 CNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANR 172 (832)
Q Consensus 93 ~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 172 (832)
+.++.+++.++..+..+ .++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 56677776666443233 3567777777777776666667777777777777777776666667777777777777765
Q ss_pred -CCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCccc
Q 003307 173 -FGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLV 251 (832)
Q Consensus 173 -l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 251 (832)
++...+..|..+++|++|++++|.+++..+ .. +..+++|+.|++++|.++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------------------~~--~~~l~~L~~L~l~~n~l~ 142 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGP---------------------------GL--FRGLAALQYLYLQDNALQ 142 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCT---------------------------TT--TTTCTTCCEEECCSSCCC
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECH---------------------------hH--hhCCcCCCEEECCCCccc
Confidence 555545555555555555555554442111 11 333444444444444443
Q ss_pred ccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCC
Q 003307 252 GAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVG 330 (832)
Q Consensus 252 ~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~ 330 (832)
+..+ .+..++
T Consensus 143 ~~~~~~~~~l~--------------------------------------------------------------------- 153 (285)
T 1ozn_A 143 ALPDDTFRDLG--------------------------------------------------------------------- 153 (285)
T ss_dssp CCCTTTTTTCT---------------------------------------------------------------------
T ss_pred ccCHhHhccCC---------------------------------------------------------------------
Confidence 2222 122222
Q ss_pred CCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEcc
Q 003307 331 HCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLS 410 (832)
Q Consensus 331 ~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 410 (832)
+|+.|+|++|.+++..+..+..+++|++|++++|++++..|..+..+++|+.|+++
T Consensus 154 ------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 154 ------------------------NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp ------------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred ------------------------CccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence 24444444444444444445556666666666666666666666666777777777
Q ss_pred CCcccccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhc
Q 003307 411 LNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISK 481 (832)
Q Consensus 411 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~ 481 (832)
+|++++..+..+..+++|+.|+|++|.+....+...... .++.++.+.+.+.+..|+.+.+
T Consensus 210 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~----------~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA----------WLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp SSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHH----------HHHHCCSEECCCBEEESGGGTT
T ss_pred CCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHH----------HHHhcccccCccccCCchHhCC
Confidence 777776666667777777777777777765433221110 1444555666666666665543
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.4e-28 Score=257.03 Aligned_cols=265 Identities=22% Similarity=0.185 Sum_probs=160.7
Q ss_pred CCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcC
Q 003307 92 LCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRA 170 (832)
Q Consensus 92 L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 170 (832)
++.++++.+.+...+. .+..+++|++|+|++|.|++..|..|..+++|++|+|++|.+++..+ |..+++|++|+|++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4455566666554443 34445666666666666666666666666666666666666665443 66666666666666
Q ss_pred CCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcc
Q 003307 171 NRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHL 250 (832)
Q Consensus 171 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 250 (832)
|++++.. ..++|++|++++|.++ +..+. .+++|+.|++++|++
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~---------------------------~~~~~-----~~~~L~~L~l~~N~l 132 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNIS---------------------------RVSCS-----RGQGKKNIYLANNKI 132 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCS---------------------------EEEEC-----CCSSCEEEECCSSCC
T ss_pred Ccccccc-----CCCCcCEEECCCCccC---------------------------CcCcc-----ccCCCCEEECCCCCC
Confidence 6654322 2245555555555544 32221 235566666666666
Q ss_pred cccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCC
Q 003307 251 VGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARV 329 (832)
Q Consensus 251 ~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l 329 (832)
++..+ .+..+++|++|++++|++++..+..+. ..+++|++|++++|.+++......
T Consensus 133 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~---------------------- 189 (317)
T 3o53_A 133 TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFIYDVKGQVV---------------------- 189 (317)
T ss_dssp CSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTSCCCEEECCCC----------------------
T ss_pred CCccchhhhccCCCCEEECCCCCCCcccHHHHh-hccCcCCEEECCCCcCcccccccc----------------------
Confidence 66555 566677777777777777755444442 234556666666555543211111
Q ss_pred CCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEc
Q 003307 330 GHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDL 409 (832)
Q Consensus 330 ~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 409 (832)
.++|+.|+|++|.+++..+ .+..+++|++|+|++|+|+ .+|..+..+++|+.|++
T Consensus 190 -----------------------l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l 244 (317)
T 3o53_A 190 -----------------------FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDL 244 (317)
T ss_dssp -----------------------CTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEEC
T ss_pred -----------------------cccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEc
Confidence 1156667777777765433 3677777888888888887 46667777788888888
Q ss_pred cCCccc-ccCcccccCCCCCCeEeccC-CcccccCC
Q 003307 410 SLNHLN-GFLLPSFFTSTKLTDLNLSG-NNFSGPLP 443 (832)
Q Consensus 410 s~N~l~-~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p 443 (832)
++|.+. +.++..+..+++|+.|++++ +.++|..|
T Consensus 245 ~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp TTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred cCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 888887 66667777777777777773 34454433
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-27 Score=254.02 Aligned_cols=249 Identities=20% Similarity=0.193 Sum_probs=164.9
Q ss_pred ccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCC-ccCccccc-------CCCCCCEEEcccccccccCCCC
Q 003307 86 IIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFH-GLIPSGIV-------SLKNLMLLNISSNSFEGTFPSG 156 (832)
Q Consensus 86 ~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~ 156 (832)
++..++|+.|++++|.+ .+| .+... |++|+|++|.++ ..+|..+. ++++|++|+|++|.+++.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 45567888999999999 455 55544 899999999994 55676665 7899999999999999888887
Q ss_pred C--CCCCCCCEeeCcCCCCCCccchhhhcC-----CCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeecc-
Q 003307 157 F--GGLGKLKYLDLRANRFGGDIMHLLSQL-----GSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGEL- 228 (832)
Q Consensus 157 ~--~~l~~L~~L~L~~N~l~~~~~~~l~~l-----~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~- 228 (832)
+ .++++|++|+|++|++++. |..+..+ ++|++|+|++|++++..+..++ .+++|++|++++|++.+.+
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR---VFPALSTLDLSDNPELGERG 190 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC---CCSSCCEEECCSCTTCHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc---cCCCCCEEECCCCCcCcchH
Confidence 6 8999999999999999987 7778777 8899999999988865555444 3467777777777765531
Q ss_pred -CCCCCCCCCCCcCEEEccCCcccccC--C--CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCcc
Q 003307 229 -FPHDGMPYFDNLEVFDASNNHLVGAI--P--SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPV 303 (832)
Q Consensus 229 -~~~~~~~~l~~L~~L~Ls~N~l~~~~--~--~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~ 303 (832)
+....+..+++|+.|++++|++++.. + .+..+++|++|+|++|++++..|...+ ..+++|++|++++|+++
T Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~Ls~N~l~--- 266 (312)
T 1wwl_A 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC-DWPSQLNSLNLSFTGLK--- 266 (312)
T ss_dssp HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC-CCCTTCCEEECTTSCCS---
T ss_pred HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh-hhcCCCCEEECCCCccC---
Confidence 22211356666777777776666321 1 233456666666666666654432221 22345555555555555
Q ss_pred CccCCCCCCEEEecCCeecccCCCCCC-CCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCC
Q 003307 304 GSITSATLKKVNLSSNKLSGSLPARVG-HCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTG 368 (832)
Q Consensus 304 ~~~~~~~L~~L~L~~N~l~~~~p~~l~-~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~ 368 (832)
.+|..+. +|+.|++++|+|++.+ . +...++|++|+|++|.+++
T Consensus 267 --------------------~ip~~~~~~L~~L~Ls~N~l~~~p-~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 267 --------------------QVPKGLPAKLSVLDLSYNRLDRNP-S-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp --------------------SCCSSCCSEEEEEECCSSCCCSCC-C-TTTSCEEEEEECTTCTTTC
T ss_pred --------------------hhhhhccCCceEEECCCCCCCCCh-h-HhhCCCCCEEeccCCCCCC
Confidence 3333222 3444555555554442 1 2233468888888888775
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-28 Score=285.19 Aligned_cols=400 Identities=14% Similarity=0.082 Sum_probs=286.3
Q ss_pred CCCCCCCCCEEECCCCCC---CccCccccc------------CCCCCCEEEcccccccccCCCCCCCC--CCCCEeeCcC
Q 003307 108 DIGSIQSLEFLDLSHNLF---HGLIPSGIV------------SLKNLMLLNISSNSFEGTFPSGFGGL--GKLKYLDLRA 170 (832)
Q Consensus 108 ~~~~l~~L~~L~Ls~N~l---~~~~p~~~~------------~l~~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~L~~ 170 (832)
.+..+++|++|+|+++.. .+.+|..++ .+++|++|+|++|.+++..+..+... .+|++|+|++
T Consensus 68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK 147 (592)
T ss_dssp HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcC
Confidence 466789999999988642 133443333 78999999999999987766666653 4599999999
Q ss_pred CC-CCC-ccchhhhcCCCCCEEECccCcCccccCCCCC-CCCCCCCccEEECCCCCCee----ccCCCCCCCCCCCcCEE
Q 003307 171 NR-FGG-DIMHLLSQLGSVVHVDLSNNQFSGSLDLGLG-DSSFISSIQYLNISENSLVG----ELFPHDGMPYFDNLEVF 243 (832)
Q Consensus 171 N~-l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~l~~L~~L~L~~N~l~~----~~~~~~~~~~l~~L~~L 243 (832)
|. ++. ..+.....+++|++|+|++|.+++.-...+. ....+++|+.|++++|.+++ .++.. +..+++|+.|
T Consensus 148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~--~~~~~~L~~L 225 (592)
T 3ogk_B 148 CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI--ARNCRSLVSV 225 (592)
T ss_dssp CEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHH--HHHCTTCCEE
T ss_pred CCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHH--HhhCCCCcEE
Confidence 87 221 1233345899999999999998743111000 01235899999999999862 22222 4568999999
Q ss_pred EccCCcccccCCCccccccccEEEccccCCC---CCCChhhhhhCCCCCCEEECCCCCCCCccCc-cCCCCCCEEEecCC
Q 003307 244 DASNNHLVGAIPSFNFVFSLRILRLGSNQLS---GSLPVALLQESSMMLSELDLSLNQLEGPVGS-ITSATLKKVNLSSN 319 (832)
Q Consensus 244 ~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~---~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~-~~~~~L~~L~L~~N 319 (832)
++++|.+.+....+..+++|+.|+++.+... +..+..+ ..+++|+.|+++++........ ...++|++|++++|
T Consensus 226 ~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~ 303 (592)
T 3ogk_B 226 KVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL--VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYA 303 (592)
T ss_dssp ECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC--CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTC
T ss_pred eccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHh--hccccccccCccccchhHHHHHHhhcCCCcEEecCCC
Confidence 9999999875447888999999999864332 1222233 4567899999988644433222 23468999999999
Q ss_pred eecccCC----CCCCCCCEEecCCCCCc-CcchhhccccCcccEEEcC-----------CCcCCCC-CcccccCCCCCCE
Q 003307 320 KLSGSLP----ARVGHCTIVDLSNNRLS-GDLSRMQNWGNYVEDIHLS-----------SNFLTGM-VPNQTSQFLRLTS 382 (832)
Q Consensus 320 ~l~~~~p----~~l~~l~~L~L~~N~l~-~~~~~~~~~~~~L~~L~Ls-----------~N~l~~~-~p~~~~~l~~L~~ 382 (832)
.+++..+ ..+.+|+.|+++ +.+. +.++.+...+++|++|+|+ .|.+++. ++.....+++|++
T Consensus 304 ~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 382 (592)
T 3ogk_B 304 LLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382 (592)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred cCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence 9865433 567889999999 4443 3344555556689999999 3666644 2333456899999
Q ss_pred EEccCCcCCCCcccccCC-CCCCCEEEcc----CCccccc-----CcccccCCCCCCeEeccCCc--ccccCCcccccCC
Q 003307 383 FKVSNNSLEGDLPAVLGT-YPELKVIDLS----LNHLNGF-----LLPSFFTSTKLTDLNLSGNN--FSGPLPLQEIQNN 450 (832)
Q Consensus 383 L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls----~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~~~~~~ 450 (832)
|+++.|.+++..+..+.. +++|+.|+++ .|++++. ++..+.++++|+.|+|++|. +++..+..+...
T Consensus 383 L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~- 461 (592)
T 3ogk_B 383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY- 461 (592)
T ss_dssp EEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHS-
T ss_pred EEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHh-
Confidence 999999999877777765 8999999996 7788874 33446779999999998543 655433333221
Q ss_pred CCCcccCcccccEEEccCCcCccc-CChhhhcCCCCCEEeCcCCcCcccCCCCc---cCCCcEEEcCCCccccc
Q 003307 451 PSTGSTQNLSLTSLDLAYNSLSGR-LLPGISKFHNLVYLNLSNNKFEGSIPDGL---PNGLKEFNVSFNNLSGV 520 (832)
Q Consensus 451 ~~~~~~~~~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~---~~~L~~l~ls~N~l~g~ 520 (832)
..+|++|+|++|++++. ++..+..+++|+.|+|++|++++.....+ .++|++|++++|+++..
T Consensus 462 -------~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 462 -------SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp -------CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred -------CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 12499999999999874 45556889999999999999876533322 26899999999998754
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=226.21 Aligned_cols=216 Identities=19% Similarity=0.193 Sum_probs=173.5
Q ss_pred CCCCCCCCccccC-CCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCcc
Q 003307 51 DGCPRNWFGITCT-NGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGL 128 (832)
Q Consensus 51 ~~c~~~w~gv~C~-~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~ 128 (832)
+.| .|.|+.|+ ...++.++++++++.. +| ..+. ++|+.|+|++|++++..+ .|..+++|++|+|++|.|+.+
T Consensus 3 ~~C--~~~~~~C~c~~~~~~l~~~~~~l~~-ip-~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i 76 (270)
T 2o6q_A 3 ALC--KKDGGVCSCNNNKNSVDCSSKKLTA-IP-SNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL 76 (270)
T ss_dssp CCB--GGGTCSBEEETTTTEEECTTSCCSS-CC-SCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC
T ss_pred ccC--CCCCCCCEeCCCCCEEEccCCCCCc-cC-CCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee
Confidence 455 89999996 4456789999988875 32 2232 578999999999988877 799999999999999999987
Q ss_pred CcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCC
Q 003307 129 IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDS 208 (832)
Q Consensus 129 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 208 (832)
.+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|.+++..+.. +
T Consensus 77 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~ 153 (270)
T 2o6q_A 77 PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV---F 153 (270)
T ss_dssp CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---T
T ss_pred ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH---c
Confidence 7777889999999999999999877778899999999999999999888888999999999999999988543332 3
Q ss_pred CCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCCCCC
Q 003307 209 SFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSL 277 (832)
Q Consensus 209 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~ 277 (832)
..+++|+.|++++|.+++..+.. +..+++|+.|++++|++++..+ .+..+++|+.|+|++|.+....
T Consensus 154 ~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 154 DKLTSLKELRLYNNQLKRVPEGA--FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred cCCcccceeEecCCcCcEeChhH--hccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 45688888888888887644433 7778888888888888886655 5777788888888888876543
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-26 Score=248.34 Aligned_cols=155 Identities=20% Similarity=0.193 Sum_probs=78.7
Q ss_pred cccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccc-CCCCCCCEEEccCCcccccCcccccCCCCCCeEec
Q 003307 355 YVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVL-GTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNL 433 (832)
Q Consensus 355 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 433 (832)
+|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|++++.. ....+++|++|+|
T Consensus 121 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~L 198 (317)
T 3o53_A 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDL 198 (317)
T ss_dssp SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEEC
T ss_pred CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEEC
Confidence 35555555555555555555555555555555555554444444 24555555555555555441 1223555555555
Q ss_pred cCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCc-ccCCCCcc--CCCcEE
Q 003307 434 SGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFE-GSIPDGLP--NGLKEF 510 (832)
Q Consensus 434 s~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-g~ip~~~~--~~L~~l 510 (832)
++|++++..+ .+.... +|+.|+|++|++++ +|..+..+++|+.|+|++|+++ +.+|.++. +.|+.+
T Consensus 199 s~N~l~~l~~-~~~~l~---------~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l 267 (317)
T 3o53_A 199 SSNKLAFMGP-EFQSAA---------GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (317)
T ss_dssp CSSCCCEECG-GGGGGT---------TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred CCCcCCcchh-hhcccC---------cccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence 5555554322 222221 25566666666652 4555556666666666666665 33333332 345555
Q ss_pred EcC-CCccccccC
Q 003307 511 NVS-FNNLSGVVP 522 (832)
Q Consensus 511 ~ls-~N~l~g~~p 522 (832)
+++ .+.++|..|
T Consensus 268 ~l~~~~~l~~~~~ 280 (317)
T 3o53_A 268 AKQTVKKLTGQNE 280 (317)
T ss_dssp HHHHHHHHHSSSS
T ss_pred ECCCchhccCCch
Confidence 555 334455444
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-26 Score=248.03 Aligned_cols=254 Identities=21% Similarity=0.193 Sum_probs=135.3
Q ss_pred CCCCCCCEEECCCCCCCccCcccccCCCCCCEEEccccccc-ccCCCCCC-------CCCCCCEeeCcCCCCCCccchhh
Q 003307 110 GSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFE-GTFPSGFG-------GLGKLKYLDLRANRFGGDIMHLL 181 (832)
Q Consensus 110 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~-------~l~~L~~L~L~~N~l~~~~~~~l 181 (832)
+..++|++|++++|.+ .+|..+... |+.|+|++|.++ ..+|..+. ++++|++|+|++|++++.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3445666666666666 445544433 666666666663 23333333 45555555555555555444443
Q ss_pred --hcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-Ccc
Q 003307 182 --SQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFN 258 (832)
Q Consensus 182 --~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~ 258 (832)
..+++|++|+|++|++++. |..++.+.. ..+++|++|++++|++.+..+ .+.
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~------------------------~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQ------------------------WLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHT------------------------TCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHH------------------------hhcCCCcEEEeeCCCCccchHHHhc
Confidence 4555555555555555433 221111100 001455555555555555443 455
Q ss_pred ccccccEEEccccCCCCCCC--hhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEe
Q 003307 259 FVFSLRILRLGSNQLSGSLP--VALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVD 336 (832)
Q Consensus 259 ~l~~L~~L~L~~N~l~~~~p--~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 336 (832)
.+++|++|+|++|++.+.++ ..+....+++|+ .|+
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~-------------------------------------------~L~ 207 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQ-------------------------------------------VLA 207 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCC-------------------------------------------EEE
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCC-------------------------------------------EEE
Confidence 55555555555555543311 111001222222 222
Q ss_pred cCCCCCcCc---chhhccccCcccEEEcCCCcCCCCCc-ccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCC
Q 003307 337 LSNNRLSGD---LSRMQNWGNYVEDIHLSSNFLTGMVP-NQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLN 412 (832)
Q Consensus 337 L~~N~l~~~---~~~~~~~~~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 412 (832)
+++|++++. ...++...++|+.|+|++|.+++.+| ..+..+++|++|+|++|+|+ .+|..+. ++|++|++++|
T Consensus 208 L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N 284 (312)
T 1wwl_A 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYN 284 (312)
T ss_dssp CTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSS
T ss_pred CCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCC
Confidence 222222211 11222223467778888888777664 44556777888888888887 6666655 67888888888
Q ss_pred cccccCcccccCCCCCCeEeccCCcccc
Q 003307 413 HLNGFLLPSFFTSTKLTDLNLSGNNFSG 440 (832)
Q Consensus 413 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 440 (832)
+|++. |. +..+++|++|+|++|++++
T Consensus 285 ~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 285 RLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 88776 43 7777777777777777764
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.7e-26 Score=255.46 Aligned_cols=237 Identities=24% Similarity=0.204 Sum_probs=146.1
Q ss_pred CCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEE
Q 003307 111 SIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHV 190 (832)
Q Consensus 111 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L 190 (832)
.+++|++|+|++|.|++..|..|..+++|++|+|++|.+++..| |.++++|++|+|++|.|++..+ .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 34467777777777777666777777777777777777766554 6667777777777776654322 2455555
Q ss_pred ECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEcc
Q 003307 191 DLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLG 269 (832)
Q Consensus 191 ~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~ 269 (832)
++++|.+++. .+. .+++|+.|++++|.+++..| .+..+++|+.|+|+
T Consensus 105 ~L~~N~l~~~---------------------------~~~-----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (487)
T 3oja_A 105 HAANNNISRV---------------------------SCS-----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (487)
T ss_dssp ECCSSCCCCE---------------------------EEC-----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECT
T ss_pred ECcCCcCCCC---------------------------Ccc-----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECC
Confidence 5555555532 221 23556666666666666655 66677777777777
Q ss_pred ccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhh
Q 003307 270 SNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRM 349 (832)
Q Consensus 270 ~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~ 349 (832)
+|.+++..|..+. ..+++|+.|+|++|.+++..+...
T Consensus 153 ~N~l~~~~~~~l~-~~l~~L~~L~Ls~N~l~~~~~~~~------------------------------------------ 189 (487)
T 3oja_A 153 LNEIDTVNFAELA-ASSDTLEHLNLQYNFIYDVKGQVV------------------------------------------ 189 (487)
T ss_dssp TSCCCEEEGGGGG-GGTTTCCEEECTTSCCCEEECCCC------------------------------------------
T ss_pred CCCCCCcChHHHh-hhCCcccEEecCCCcccccccccc------------------------------------------
Confidence 7777766665552 234555555555555443211110
Q ss_pred ccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCccc-ccCcccccCCCCC
Q 003307 350 QNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLN-GFLLPSFFTSTKL 428 (832)
Q Consensus 350 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L 428 (832)
.++|+.|+|++|.|++.+|. +..+++|+.|+|++|.|++ +|..+..+++|+.|++++|.+. +.+|..+..++.|
T Consensus 190 ---l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L 264 (487)
T 3oja_A 190 ---FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (487)
T ss_dssp ---CTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred ---CCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence 11466666666666654443 6667777777777777774 5666777777777777777776 5555556666666
Q ss_pred CeEecc
Q 003307 429 TDLNLS 434 (832)
Q Consensus 429 ~~L~Ls 434 (832)
+.|+++
T Consensus 265 ~~l~~~ 270 (487)
T 3oja_A 265 QTVAKQ 270 (487)
T ss_dssp HHHHHH
T ss_pred cEEecc
Confidence 655554
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-25 Score=252.08 Aligned_cols=215 Identities=23% Similarity=0.195 Sum_probs=113.3
Q ss_pred CCcCEEEccCCcccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEe
Q 003307 238 DNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNL 316 (832)
Q Consensus 238 ~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L 316 (832)
++|+.|+|++|.+++..| .+..+++|++|+|++|.+++..| + ..+++|++|+|++|.+++..+. ++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l--~~l~~L~~L~Ls~N~l~~l~~~---~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--L--ESLSTLRTLDLNNNYVQELLVG---PSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--C--TTCTTCCEEECCSSEEEEEEEC---TTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--c--ccCCCCCEEEecCCcCCCCCCC---CCcCEEEC
Confidence 345555555555554443 44455555555555555543333 2 2344444444444444432211 34444444
Q ss_pred cCCeecccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCccc
Q 003307 317 SSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPA 396 (832)
Q Consensus 317 ~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 396 (832)
++|.+++..+..+. +|+.|+|++|.+++..|..+..+++|++|+|++|.+++.+|.
T Consensus 107 ~~N~l~~~~~~~l~------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (487)
T 3oja_A 107 ANNNISRVSCSRGQ------------------------GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (487)
T ss_dssp CSSCCCCEEECCCS------------------------SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG
T ss_pred cCCcCCCCCccccC------------------------CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH
Confidence 44444443333333 455566666666655555566666666666666666655555
Q ss_pred ccC-CCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccC
Q 003307 397 VLG-TYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRL 475 (832)
Q Consensus 397 ~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 475 (832)
.+. .+++|+.|+|++|.|++..+ +..+++|+.|+|++|++++..|. +.... +|+.|+|++|.|++ +
T Consensus 163 ~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~---------~L~~L~Ls~N~l~~-l 229 (487)
T 3oja_A 163 ELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAA---------GVTWISLRNNKLVL-I 229 (487)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGT---------TCSEEECTTSCCCE-E
T ss_pred HHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCC---------CccEEEecCCcCcc-c
Confidence 554 45666666666666665422 22356666666666666653332 22222 26666666666664 4
Q ss_pred ChhhhcCCCCCEEeCcCCcCc
Q 003307 476 LPGISKFHNLVYLNLSNNKFE 496 (832)
Q Consensus 476 p~~l~~l~~L~~L~Ls~N~l~ 496 (832)
|..+..+++|+.|++++|++.
T Consensus 230 p~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 230 EKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CTTCCCCTTCCEEECTTCCBC
T ss_pred chhhccCCCCCEEEcCCCCCc
Confidence 555666667777777777666
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-24 Score=227.06 Aligned_cols=205 Identities=20% Similarity=0.203 Sum_probs=142.8
Q ss_pred CCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeC
Q 003307 90 KMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDL 168 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 168 (832)
++|++|+|++|.+++..+ .|..+++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 468888888888888777 7888888888888888888777778888888888888888888777788888888888888
Q ss_pred cCCCCCCccchhhhcCCCCCEEECccCcCccc-cCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcC----EE
Q 003307 169 RANRFGGDIMHLLSQLGSVVHVDLSNNQFSGS-LDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLE----VF 243 (832)
Q Consensus 169 ~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~----~L 243 (832)
++|++++..+..+..+++|++|++++|.+++. +|..++ .+++|++|++++|++++..+.. +..+.+|+ .|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~---~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~l~l~L 182 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS---NLTNLEHLDLSSNKIQSIYCTD--LRVLHQMPLLNLSL 182 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG---GCTTCCEEECCSSCCCEECGGG--GHHHHTCTTCCEEE
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhc---cCCCCCEEECCCCCCCcCCHHH--hhhhhhccccceee
Confidence 88888877776788888888888888888742 344333 3467777777777776543332 44444444 66
Q ss_pred EccCCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCC
Q 003307 244 DASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG 301 (832)
Q Consensus 244 ~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~ 301 (832)
++++|.+++..+......+|+.|++++|++++ +|...+ ..+++|+.|++++|.+++
T Consensus 183 ~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~-~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 183 DLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPDGIF-DRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp ECCSSCCCEECTTSSCSCCEEEEECCSSCCSC-CCTTTT-TTCCSCCEEECCSSCBCC
T ss_pred ecCCCcccccCccccCCCcccEEECCCCceee-cCHhHh-cccccccEEEccCCcccc
Confidence 77777776655533334466677777776663 333322 344555555555555543
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-23 Score=224.32 Aligned_cols=206 Identities=17% Similarity=0.123 Sum_probs=119.2
Q ss_pred CCCEEECCCCCCCccCcc---cccCCCCCCEEEcccccccccCCCCC--CCCCCCCEeeCcCCCCCCccc----hhhhcC
Q 003307 114 SLEFLDLSHNLFHGLIPS---GIVSLKNLMLLNISSNSFEGTFPSGF--GGLGKLKYLDLRANRFGGDIM----HLLSQL 184 (832)
Q Consensus 114 ~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~~----~~l~~l 184 (832)
.++.|.+.++.++...-. .+..+++|++|+|++|.+++..|..+ ..+++|++|+|++|++++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 456666666665422110 11234557777777777776666666 667777777777777765433 334467
Q ss_pred CCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeec--cCCCCCCCCCCCcCEEEccCCcccccCC----Ccc
Q 003307 185 GSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGE--LFPHDGMPYFDNLEVFDASNNHLVGAIP----SFN 258 (832)
Q Consensus 185 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~ 258 (832)
++|++|+|++|.+++..+..++ .+++|++|+|++|++.+. ++....+..+++|++|++++|+++...+ .+.
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVR---AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCC---CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred cCCCEEEeeCCCcchhhHHHhc---cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 7777777777777654444333 346667777777766542 2222224566777777777777753222 135
Q ss_pred ccccccEEEccccCCCCCCChhhhhh-CCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecc
Q 003307 259 FVFSLRILRLGSNQLSGSLPVALLQE-SSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSG 323 (832)
Q Consensus 259 ~l~~L~~L~L~~N~l~~~~p~~~~~~-~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~ 323 (832)
.+++|++|+|++|++++..|..+... .+++|++|++++|+++.. |.....+|++|+|++|++++
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGLPAKLRVLDLSSNRLNR 286 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCCCSCCSCEECCSCCCCS
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhhcCCCCEEECCCCcCCC
Confidence 56777777777777776656544211 114666666666666633 22222456666666666654
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-26 Score=267.31 Aligned_cols=421 Identities=16% Similarity=0.117 Sum_probs=226.9
Q ss_pred CCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccC---C-C------------CCCCCCCCEEE
Q 003307 56 NWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNI---T-D------------IGSIQSLEFLD 119 (832)
Q Consensus 56 ~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~-~------------~~~l~~L~~L~ 119 (832)
.|.++.. ..+..+++.+.. +..+...+..+++|+.|+|+++...... | . ...+++|++|+
T Consensus 36 ~W~~~~~--~~~~~l~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~ 111 (594)
T 2p1m_B 36 SWYEIER--WCRRKVFIGNCY--AVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIR 111 (594)
T ss_dssp HHHHHHH--HHCCEEEESSTT--SSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEE
T ss_pred HHHHhhh--hhceEEeecccc--ccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEE
Confidence 6777732 123455665543 2222345677889999999987633211 1 1 13567888888
Q ss_pred CCCCCCCccCccccc-CCCCCCEEEcccc-ccccc-CCCCCCCCCCCCEeeCcCCCCCCccchhhh----cCCCCCEEEC
Q 003307 120 LSHNLFHGLIPSGIV-SLKNLMLLNISSN-SFEGT-FPSGFGGLGKLKYLDLRANRFGGDIMHLLS----QLGSVVHVDL 192 (832)
Q Consensus 120 Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~----~l~~L~~L~L 192 (832)
|++|.+++..+..+. .+++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+. .+++|++|++
T Consensus 112 L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l 191 (594)
T 2p1m_B 112 LKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNI 191 (594)
T ss_dssp EESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEEC
T ss_pred eeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEe
Confidence 888888776666665 5788888888887 44432 333344677888888888877665554443 5557777777
Q ss_pred ccCc--CccccCCCCCC-CCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCC-------cccccCCCcccccc
Q 003307 193 SNNQ--FSGSLDLGLGD-SSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNN-------HLVGAIPSFNFVFS 262 (832)
Q Consensus 193 s~N~--l~~~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-------~l~~~~~~~~~l~~ 262 (832)
++|. ++.. .+.. ...+++|+.|++++|...+.++.. +..+++|+.|+++.+ .+.+..+.+..+++
T Consensus 192 ~~~~~~~~~~---~l~~l~~~~~~L~~L~L~~~~~~~~l~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~ 266 (594)
T 2p1m_B 192 SCLASEVSFS---ALERLVTRCPNLKSLKLNRAVPLEKLATL--LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKE 266 (594)
T ss_dssp TTCCSCCCHH---HHHHHHHHCTTCCEEECCTTSCHHHHHHH--HHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTT
T ss_pred cccCCcCCHH---HHHHHHHhCCCCcEEecCCCCcHHHHHHH--HhcCCcceEcccccccCccchhhHHHHHHHHhcCCC
Confidence 7775 2210 0100 012366777777766222222222 445666777764433 33333334555666
Q ss_pred ccEE-EccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccC---ccCCCCCCEEEecCCeecccCCCCCCCCCEEecC
Q 003307 263 LRIL-RLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVG---SITSATLKKVNLSSNKLSGSLPARVGHCTIVDLS 338 (832)
Q Consensus 263 L~~L-~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~---~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~ 338 (832)
|+.| .+.+... +.++..+ ..+++|++|++++|.+++... ....++|++|++++| ++.
T Consensus 267 L~~Ls~~~~~~~-~~l~~~~--~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~--------------- 327 (594)
T 2p1m_B 267 LRCLSGFWDAVP-AYLPAVY--SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED--------------- 327 (594)
T ss_dssp CCEEECCBTCCG-GGGGGGH--HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH---------------
T ss_pred cccccCCcccch-hhHHHHH--HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH---------------
Confidence 6666 2322211 1222222 234556666666666443211 112345555555544 221
Q ss_pred CCCCcCcchhhccccCcccEEEc---------CCCcCCCCCcccc-cCCCCCCEEEccCCcCCCCcccccC-CCCCCCEE
Q 003307 339 NNRLSGDLSRMQNWGNYVEDIHL---------SSNFLTGMVPNQT-SQFLRLTSFKVSNNSLEGDLPAVLG-TYPELKVI 407 (832)
Q Consensus 339 ~N~l~~~~~~~~~~~~~L~~L~L---------s~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L 407 (832)
..+..+...+++|++|++ +.+.+++.....+ ..+++|+.|.++.|.+++.....+. .+++|+.|
T Consensus 328 -----~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L 402 (594)
T 2p1m_B 328 -----AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF 402 (594)
T ss_dssp -----HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEE
T ss_pred -----HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCccee
Confidence 111222222345666666 2234433222222 2366777777777777655444443 46777777
Q ss_pred Ecc--C----CcccccC-----cccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCC
Q 003307 408 DLS--L----NHLNGFL-----LPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLL 476 (832)
Q Consensus 408 ~Ls--~----N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p 476 (832)
+++ + |.+++.. +..+..+++|+.|+|++ .+++..+..+... ..+|+.|+|++|.+++..+
T Consensus 403 ~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~--------~~~L~~L~L~~~~i~~~~~ 473 (594)
T 2p1m_B 403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTY--------AKKMEMLSVAFAGDSDLGM 473 (594)
T ss_dssp EEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHH--------CTTCCEEEEESCCSSHHHH
T ss_pred EeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHh--------chhccEeeccCCCCcHHHH
Confidence 777 3 4454221 12245567777777766 4443322222210 1137777777777766555
Q ss_pred hhh-hcCCCCCEEeCcCCcCcccCCCCcc---CCCcEEEcCCCccc
Q 003307 477 PGI-SKFHNLVYLNLSNNKFEGSIPDGLP---NGLKEFNVSFNNLS 518 (832)
Q Consensus 477 ~~l-~~l~~L~~L~Ls~N~l~g~ip~~~~---~~L~~l~ls~N~l~ 518 (832)
..+ ..+++|+.|+|++|.+++..+..+. ++|+.|++++|+++
T Consensus 474 ~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 444 5677777777777777543322111 56777777777663
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-26 Score=267.90 Aligned_cols=401 Identities=15% Similarity=0.101 Sum_probs=243.0
Q ss_pred CcEEEEEeCCCCCccccC--------------cccccCCCCCCEEEcCCCCCcccCC-CCC-CCCCCCEEECCCC-CCCc
Q 003307 65 GYVTSIMLNDMGLVGNFS--------------FPTIIGLKMLCNVSVSNNQLMGNIT-DIG-SIQSLEFLDLSHN-LFHG 127 (832)
Q Consensus 65 ~~v~~l~l~~~~l~g~~~--------------~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~-~l~~L~~L~Ls~N-~l~~ 127 (832)
.+++.++++++.....+. ......+++|++|+|++|.+++..+ .+. .+++|++|+|++| .++.
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 457888888865332221 0113468899999999999887665 554 6899999999999 5654
Q ss_pred c-CcccccCCCCCCEEEcccccccccCCCCC----CCCCCCCEeeCcCCC--CCCc-cchhhhcCCCCCEEECccCc-Cc
Q 003307 128 L-IPSGIVSLKNLMLLNISSNSFEGTFPSGF----GGLGKLKYLDLRANR--FGGD-IMHLLSQLGSVVHVDLSNNQ-FS 198 (832)
Q Consensus 128 ~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~----~~l~~L~~L~L~~N~--l~~~-~~~~l~~l~~L~~L~Ls~N~-l~ 198 (832)
. ++..+.++++|++|+|++|.+++..+..+ ..+++|++|+|++|. ++.. ....+..+++|++|+|++|. ++
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 3 44455589999999999999887554444 477899999999997 3211 22334567999999999983 43
Q ss_pred cccCCCCCCCCCCCCccEEECCCCC-------CeeccCCCCCCCCCCCcCEE-EccCCcccccCC-CccccccccEEEcc
Q 003307 199 GSLDLGLGDSSFISSIQYLNISENS-------LVGELFPHDGMPYFDNLEVF-DASNNHLVGAIP-SFNFVFSLRILRLG 269 (832)
Q Consensus 199 ~~~~~~~~~~~~l~~L~~L~L~~N~-------l~~~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~-~~~~l~~L~~L~L~ 269 (832)
+ ++..+. .+++|+.|+++.+. +.+ ++.. +.++++|+.| .+...... .++ .+..+++|+.|+|+
T Consensus 226 ~-l~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~-l~~~--l~~~~~L~~Ls~~~~~~~~-~l~~~~~~~~~L~~L~L~ 297 (594)
T 2p1m_B 226 K-LATLLQ---RAPQLEELGTGGYTAEVRPDVYSG-LSVA--LSGCKELRCLSGFWDAVPA-YLPAVYSVCSRLTTLNLS 297 (594)
T ss_dssp H-HHHHHH---HCTTCSEEECSBCCCCCCHHHHHH-HHHH--HHTCTTCCEEECCBTCCGG-GGGGGHHHHTTCCEEECT
T ss_pred H-HHHHHh---cCCcceEcccccccCccchhhHHH-HHHH--HhcCCCcccccCCcccchh-hHHHHHHhhCCCCEEEcc
Confidence 3 443333 34789999976653 222 2222 6678899988 45444332 333 44578999999999
Q ss_pred ccCCCCCCChhhhhhCCCCCCEEECCCCCCCC-ccCc--cCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcc
Q 003307 270 SNQLSGSLPVALLQESSMMLSELDLSLNQLEG-PVGS--ITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDL 346 (832)
Q Consensus 270 ~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~-~~~~--~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~ 346 (832)
+|.+++.....+. ..+++|+.|++++| +.. .++. ...++|++|++.++.-.| ....+.+++..
T Consensus 298 ~~~l~~~~l~~~~-~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g------------~~~~~~l~~~~ 363 (594)
T 2p1m_B 298 YATVQSYDLVKLL-CQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV------------MEPNVALTEQG 363 (594)
T ss_dssp TCCCCHHHHHHHH-TTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC------------SSCSSCCCHHH
T ss_pred CCCCCHHHHHHHH-hcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc------------cccCCCCCHHH
Confidence 9997754333332 46789999999988 432 1111 124678899885432100 01112222211
Q ss_pred -hhhccccCcccEEEcCCCcCCCCCccccc-CCCCCCEEEcc--C----CcCCCC-----cccccCCCCCCCEEEccCCc
Q 003307 347 -SRMQNWGNYVEDIHLSSNFLTGMVPNQTS-QFLRLTSFKVS--N----NSLEGD-----LPAVLGTYPELKVIDLSLNH 413 (832)
Q Consensus 347 -~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls--~----N~l~~~-----~p~~~~~l~~L~~L~Ls~N~ 413 (832)
..+...+++|+.|.++.|.+++.....+. .+++|+.|+++ + |.+++. ++..+..+++|+.|++++ .
T Consensus 364 l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~ 442 (594)
T 2p1m_B 364 LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-L 442 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-S
T ss_pred HHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-c
Confidence 11112233566666666666554444343 35666666666 3 444421 112244566677777755 5
Q ss_pred ccccCcccccC-CCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCCh-hhhcCCCCCEEeCc
Q 003307 414 LNGFLLPSFFT-STKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLP-GISKFHNLVYLNLS 491 (832)
Q Consensus 414 l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls 491 (832)
+++..+..+.. +++|+.|+|++|.+++..+..+... ..+|++|+|++|.+++..+. .+..+++|+.|+++
T Consensus 443 l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~--------~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 514 (594)
T 2p1m_B 443 LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSG--------CDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHH--------CTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEE
T ss_pred ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhc--------CCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeee
Confidence 55444444443 6667777777776654322222110 11367777777776544333 23446677777777
Q ss_pred CCcCc
Q 003307 492 NNKFE 496 (832)
Q Consensus 492 ~N~l~ 496 (832)
+|+++
T Consensus 515 ~~~~~ 519 (594)
T 2p1m_B 515 SCSVS 519 (594)
T ss_dssp SSCCB
T ss_pred CCCCC
Confidence 77664
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=212.74 Aligned_cols=210 Identities=19% Similarity=0.105 Sum_probs=184.3
Q ss_pred CcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEE
Q 003307 65 GYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLN 143 (832)
Q Consensus 65 ~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 143 (832)
..++.|+++++++.+.. +..+.++++|++|+|++|.+++..+ .|..+++|++|+|++|.+++..+..|.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEEC-TTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccC-HhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 45899999999988654 4578999999999999999998888 899999999999999999999889999999999999
Q ss_pred cccccccccCCCCCCCCCCCCEeeCcCCCCCCc-cchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCcc-EEECCC
Q 003307 144 ISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGD-IMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQ-YLNISE 221 (832)
Q Consensus 144 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~-~L~L~~ 221 (832)
+++|.+++..+..|.++++|++|+|++|++++. +|..+..+++|++|+|++|++++..+..+..+..++.|. .|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 999999988887899999999999999999875 589999999999999999999977666666555555555 899999
Q ss_pred CCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCCCCCC
Q 003307 222 NSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLP 278 (832)
Q Consensus 222 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p 278 (832)
|.+++..+.. + ...+|+.|++++|++++..+ .+..+++|+.|+|++|.+++..|
T Consensus 187 n~l~~~~~~~--~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 187 NPMNFIQPGA--F-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SCCCEECTTS--S-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CcccccCccc--c-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 9998654433 3 34589999999999997776 57889999999999999997765
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.3e-23 Score=213.82 Aligned_cols=210 Identities=20% Similarity=0.233 Sum_probs=130.2
Q ss_pred cccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCC
Q 003307 85 TIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLK 164 (832)
Q Consensus 85 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 164 (832)
....+++|+.|++++|.+.. ++.+..+++|++|+|++|.+++. ..+..+++|++|+|++|.+++..+..|.++++|+
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~-~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKS-VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCC-CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccccceeeeeeCCCCccc-ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 34556777777777777663 34577777788888888777763 3677777788888888877776666677777788
Q ss_pred EeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEE
Q 003307 165 YLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFD 244 (832)
Q Consensus 165 ~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 244 (832)
+|+|++|++++..+..|..+++|++|+|++|.+++..+..+ ..+++|+.|++++|++++..+.. +..+++|+.|+
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~ 187 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF---DKLTNLTELDLSYNQLQSLPEGV--FDKLTQLKDLR 187 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEE
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHh---ccCccCCEEECCCCCcCccCHHH--hcCCccCCEEE
Confidence 88887777777777777777777777777777764333222 22345555555555554322222 44445555555
Q ss_pred ccCCcccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecc
Q 003307 245 ASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSG 323 (832)
Q Consensus 245 Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~ 323 (832)
+++|++++..+ .+..+++|+.|++++|.+. +. .+.|+.++++.|+++|
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------------------------~~-----~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------------------------CT-----CPGIRYLSEWINKHSG 236 (272)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBC--------------------------CC-----TTTTHHHHHHHHHTGG
T ss_pred CCCCcCCccCHHHHhCCcCCCEEEccCCCcc--------------------------cc-----CcHHHHHHHHHHhCCC
Confidence 55555544433 2344444444444444443 22 1245566677777777
Q ss_pred cCCCCCCCCC
Q 003307 324 SLPARVGHCT 333 (832)
Q Consensus 324 ~~p~~l~~l~ 333 (832)
.+|..++.+.
T Consensus 237 ~ip~~~~~~~ 246 (272)
T 3rfs_A 237 VVRNSAGSVA 246 (272)
T ss_dssp GBBCTTSCBC
T ss_pred cccCcccccC
Confidence 7777766554
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-23 Score=216.83 Aligned_cols=162 Identities=22% Similarity=0.245 Sum_probs=135.6
Q ss_pred cccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEecc
Q 003307 355 YVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLS 434 (832)
Q Consensus 355 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 434 (832)
+|++|+|++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|+.|+|+
T Consensus 86 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC
Confidence 68888888888888877778888889999999999987777778888999999999999988877778888999999999
Q ss_pred CCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCccCCCcEEEcCC
Q 003307 435 GNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSF 514 (832)
Q Consensus 435 ~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~L~~l~ls~ 514 (832)
+|++++..+..+.... +|++|+|++|++++..+..+..+++|+.|+|++|++.|.+| .++.++++.
T Consensus 166 ~n~l~~~~~~~~~~l~---------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-----~l~~l~~~~ 231 (272)
T 3rfs_A 166 YNQLQSLPEGVFDKLT---------QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-----GIRYLSEWI 231 (272)
T ss_dssp SSCCCCCCTTTTTTCT---------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT-----TTHHHHHHH
T ss_pred CCCcCccCHHHhcCCc---------cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc-----HHHHHHHHH
Confidence 9988865553333322 48999999999998888888999999999999999998765 478899999
Q ss_pred CccccccCccCCCCCC
Q 003307 515 NNLSGVVPENLRNFPD 530 (832)
Q Consensus 515 N~l~g~~p~~~~~~~~ 530 (832)
|.++|.+|..+...+.
T Consensus 232 n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 232 NKHSGVVRNSAGSVAP 247 (272)
T ss_dssp HHTGGGBBCTTSCBCG
T ss_pred HhCCCcccCcccccCC
Confidence 9999999988766543
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.89 E-value=6e-22 Score=206.65 Aligned_cols=203 Identities=22% Similarity=0.248 Sum_probs=164.1
Q ss_pred CCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCc
Q 003307 90 KMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLR 169 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 169 (832)
..++.++++++.++..+..+. ++|++|+|++|+|++..+..|.++++|++|+|++|.++...+..|.++++|++|+|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 357899999999996544554 689999999999998888899999999999999999997777778999999999999
Q ss_pred CCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCc
Q 003307 170 ANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNH 249 (832)
Q Consensus 170 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 249 (832)
+|++++..+..|..+++|++|+|++|++++..+..+ ..+++|++|+|++|.+++..+.. +..+++|+.|++++|.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF---DSLTKLTYLSLGYNELQSLPKGV--FDKLTSLKELRLYNNQ 168 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT---TTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECCSSC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh---CcCcCCCEEECCCCcCCccCHhH--ccCCcccceeEecCCc
Confidence 999998888889999999999999999986554433 45688899999999887544333 7788888888888888
Q ss_pred ccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCC
Q 003307 250 LVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG 301 (832)
Q Consensus 250 l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~ 301 (832)
+++..+ .+..+++|++|+|++|++++ +|...+ ..+++|+.|++++|.+..
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~-~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 169 LKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAF-DSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTT-TTCTTCCEEECCSSCBCC
T ss_pred CcEeChhHhccCCCcCEEECCCCcCCc-CCHHHh-ccccCCCEEEecCCCeeC
Confidence 887666 57788888888888888874 443322 456667777777776653
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.88 E-value=9.5e-22 Score=207.01 Aligned_cols=203 Identities=22% Similarity=0.186 Sum_probs=135.0
Q ss_pred cccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCC
Q 003307 85 TIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLK 164 (832)
Q Consensus 85 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 164 (832)
.+.++++++.+++++|.++..++.+. +++++|+|++|.|++..+..|.++++|++|+|++|.|++..+. ..+++|+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred cccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 35566677777777777765544443 5777777777777777777777777777777777777754332 6677777
Q ss_pred EeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEE
Q 003307 165 YLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFD 244 (832)
Q Consensus 165 ~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 244 (832)
+|+|++|+++ .+|..+..+++|++|+|++|++++..+..+ ..+++|++|+|++|++++..+.. |..+++|+.|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~ 154 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL---RGLGELQELYLKGNELKTLPPGL--LTPTPKLEKLS 154 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTT---TTCTTCCEEECTTSCCCCCCTTT--TTTCTTCCEEE
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHH---cCCCCCCEEECCCCCCCccChhh--cccccCCCEEE
Confidence 7777777776 455566777777777777777774433333 34467777777777776433322 66677777777
Q ss_pred ccCCcccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCC
Q 003307 245 ASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLE 300 (832)
Q Consensus 245 Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~ 300 (832)
+++|++++..+ .+..+++|+.|+|++|+++ .+|..++ ....|+.|+|++|.+.
T Consensus 155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~--~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 155 LANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF--GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT--TTCCCSEEECCSCCBC
T ss_pred CCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhc--ccccCCeEEeCCCCcc
Confidence 77777775555 4566777777777777777 5666553 3345666666666554
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-22 Score=204.33 Aligned_cols=195 Identities=13% Similarity=0.140 Sum_probs=146.6
Q ss_pred CCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCC-CCccCcccccCCCCCCEEEccc-ccccccCCCCCCCCCCCCEe
Q 003307 90 KMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNL-FHGLIPSGIVSLKNLMLLNISS-NSFEGTFPSGFGGLGKLKYL 166 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L 166 (832)
.+|+.|+|++|++++..+ .|..+++|++|+|++|. ++.+.+..|.++++|++|+|++ |++++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378999999999998887 78899999999999996 8888777889999999999998 89988777888899999999
Q ss_pred eCcCCCCCCccchhhhcCCCCC---EEECccC-cCccccCCCCCCCCCCCCcc-EEECCCCCCeeccCCCCCCCCCCCcC
Q 003307 167 DLRANRFGGDIMHLLSQLGSVV---HVDLSNN-QFSGSLDLGLGDSSFISSIQ-YLNISENSLVGELFPHDGMPYFDNLE 241 (832)
Q Consensus 167 ~L~~N~l~~~~~~~l~~l~~L~---~L~Ls~N-~l~~~~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~~~l~~L~ 241 (832)
+|++|++++ +|. |..+++|+ +|++++| .+++..+..+ ..+++|+ .|++++|.++ .++.. .+.. ++|+
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~---~~l~~L~~~L~l~~n~l~-~i~~~-~~~~-~~L~ 182 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF---QGLCNETLTLKLYNNGFT-SVQGY-AFNG-TKLD 182 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT---TTTBSSEEEEECCSCCCC-EECTT-TTTT-CEEE
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccc---cchhcceeEEEcCCCCCc-ccCHh-hcCC-CCCC
Confidence 999999886 444 77788887 8888888 7775443333 3457778 8888888876 44433 2333 6777
Q ss_pred EEEccCCc-ccccCC-Ccccc-ccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCC
Q 003307 242 VFDASNNH-LVGAIP-SFNFV-FSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLN 297 (832)
Q Consensus 242 ~L~Ls~N~-l~~~~~-~~~~l-~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N 297 (832)
.|++++|+ +++..+ .|..+ ++|+.|++++|+++ .+|.. .+.+|+.|+++++
T Consensus 183 ~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~----~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK----GLEHLKELIARNT 236 (239)
T ss_dssp EEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT----TCTTCSEEECTTC
T ss_pred EEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh----HhccCceeeccCc
Confidence 88888874 775555 56667 77777777777776 34433 2445666666554
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-22 Score=199.86 Aligned_cols=180 Identities=20% Similarity=0.172 Sum_probs=132.0
Q ss_pred CCCCCCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCcc
Q 003307 50 SDGCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGL 128 (832)
Q Consensus 50 ~~~c~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~ 128 (832)
++.|.|.|.+|.|+...++. + +. .-.++|++|+|++|++++..+ .|..+++|++|+|++|+|++.
T Consensus 2 p~~C~C~~~~v~c~~~~l~~-----------~-p~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 67 (208)
T 2o6s_A 2 PSRCSCSGTTVECYSQGRTS-----------V-PT--GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL 67 (208)
T ss_dssp CTTCEEETTEEECCSSCCSS-----------C-CS--CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred cCCCEECCCEEEecCCCccC-----------C-CC--CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc
Confidence 45788899999996433222 1 11 123578999999999987776 678899999999999999887
Q ss_pred CcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCC
Q 003307 129 IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDS 208 (832)
Q Consensus 129 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 208 (832)
.+..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+.. +
T Consensus 68 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~---~ 144 (208)
T 2o6s_A 68 PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV---F 144 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT---T
T ss_pred ChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHH---h
Confidence 7777888999999999999998777777888999999999999998887777888888888888888887543322 2
Q ss_pred CCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC
Q 003307 209 SFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP 255 (832)
Q Consensus 209 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 255 (832)
..+++|+.|++++|.+. ..+++|+.|+++.|+++|.+|
T Consensus 145 ~~l~~L~~L~l~~N~~~---------~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 145 DRLTSLQYIWLHDNPWD---------CTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp TTCTTCCEEECCSCCBC---------CCTTTTHHHHHHHHHCTTTBB
T ss_pred ccCCCccEEEecCCCee---------cCCCCHHHHHHHHHhCCceee
Confidence 33456666666666553 223445555555555555555
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.9e-24 Score=229.21 Aligned_cols=265 Identities=15% Similarity=0.169 Sum_probs=207.2
Q ss_pred CCCCccccCCCcEEEEEeCCCCCccccCcccccCC--CCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCcc-Ccc
Q 003307 55 RNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGL--KMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGL-IPS 131 (832)
Q Consensus 55 ~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~ 131 (832)
..|.++.|++..++.++++++.+. +..+..+ ++++.|++++|.+.+..+.+..+++|++|+|++|.+++. +|.
T Consensus 37 ~~W~~~~~~~~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~ 112 (336)
T 2ast_B 37 KRWYRLASDESLWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG 112 (336)
T ss_dssp HHHHHHHTCSTTSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHH
T ss_pred HHHHHHhcCchhheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHH
Confidence 369999888777899999988766 3456666 899999999999999888778899999999999999876 788
Q ss_pred cccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCC-CCCCc-cchhhhcCCCCCEEECccC-cCccc-cCCCCCC
Q 003307 132 GIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRAN-RFGGD-IMHLLSQLGSVVHVDLSNN-QFSGS-LDLGLGD 207 (832)
Q Consensus 132 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~~~~l~~l~~L~~L~Ls~N-~l~~~-~~~~~~~ 207 (832)
.+..+++|++|+|++|.+++..+..|+.+++|++|+|++| .+++. ++..+..+++|++|++++| .+++. ++..+.
T Consensus 113 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~- 191 (336)
T 2ast_B 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA- 191 (336)
T ss_dssp HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH-
T ss_pred HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH-
Confidence 8999999999999999999888889999999999999999 68763 6777899999999999999 88853 333332
Q ss_pred CCCCC-CccEEECCCC--CCe-eccCCCCCCCCCCCcCEEEccCCc-ccccCC-CccccccccEEEccccC-CCCCCChh
Q 003307 208 SSFIS-SIQYLNISEN--SLV-GELFPHDGMPYFDNLEVFDASNNH-LVGAIP-SFNFVFSLRILRLGSNQ-LSGSLPVA 280 (832)
Q Consensus 208 ~~~l~-~L~~L~L~~N--~l~-~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~l~~L~~L~L~~N~-l~~~~p~~ 280 (832)
.++ +|++|++++| .++ +.++.. +..+++|+.|++++|. +++..+ .+..+++|+.|++++|. +.......
T Consensus 192 --~l~~~L~~L~l~~~~~~~~~~~l~~~--~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 267 (336)
T 2ast_B 192 --HVSETITQLNLSGYRKNLQKSDLSTL--VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267 (336)
T ss_dssp --HSCTTCCEEECCSCGGGSCHHHHHHH--HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred --hcccCCCEEEeCCCcccCCHHHHHHH--HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence 347 9999999999 454 233333 5678899999999999 665444 78888999999999995 32111113
Q ss_pred hhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCC
Q 003307 281 LLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGH 331 (832)
Q Consensus 281 ~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~ 331 (832)
+ ..+++|+.|++++| ++...-......+..|++++|++++..|..+++
T Consensus 268 l--~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 268 L--GEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp G--GGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred H--hcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEecccCccccCCcccc
Confidence 3 45788999999988 432111111134777788888888887776654
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-23 Score=229.66 Aligned_cols=82 Identities=20% Similarity=0.169 Sum_probs=49.7
Q ss_pred EEECCCCCCCccCcccccCCCCCCEEEcccccccccCC----CCCCCCC-CCCEeeCcCCCCCCccchhhhcC-----CC
Q 003307 117 FLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFP----SGFGGLG-KLKYLDLRANRFGGDIMHLLSQL-----GS 186 (832)
Q Consensus 117 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~L~~N~l~~~~~~~l~~l-----~~ 186 (832)
+++|++|.+++.+|..+...++|++|+|++|.+++..+ ..|.+++ +|++|+|++|++++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35566666666666655555556666666666665544 4555666 66666666666665555555543 55
Q ss_pred CCEEECccCcCc
Q 003307 187 VVHVDLSNNQFS 198 (832)
Q Consensus 187 L~~L~Ls~N~l~ 198 (832)
|++|+|++|.++
T Consensus 82 L~~L~Ls~n~l~ 93 (362)
T 3goz_A 82 VTSLNLSGNFLS 93 (362)
T ss_dssp CCEEECCSSCGG
T ss_pred ccEEECcCCcCC
Confidence 666666666555
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=201.26 Aligned_cols=187 Identities=19% Similarity=0.188 Sum_probs=118.3
Q ss_pred CCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCccccc
Q 003307 56 NWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIV 134 (832)
Q Consensus 56 ~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 134 (832)
.|.|..|.. ..+.++++++++.. + +..+. +.++.|+|++|.+.+..+ .|..+++|++|+|++|.|++..+..|.
T Consensus 6 ~~~gC~C~~-~~~~l~~~~~~l~~-~-p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 80 (251)
T 3m19_A 6 TVTGCTCNE-GKKEVDCQGKSLDS-V-PSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD 80 (251)
T ss_dssp HHHSSEEEG-GGTEEECTTCCCSS-C-CSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CCCceEcCC-CCeEEecCCCCccc-c-CCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc
Confidence 788888842 23356777776653 2 12222 467777777777776666 677777777777777777776666677
Q ss_pred CCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCc
Q 003307 135 SLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSI 214 (832)
Q Consensus 135 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L 214 (832)
.+++|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|++++..+..
T Consensus 81 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---------- 150 (251)
T 3m19_A 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA---------- 150 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----------
T ss_pred cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHH----------
Confidence 7777777777777777666666677777777777777777666666666666666666666666332222
Q ss_pred cEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCCCC
Q 003307 215 QYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGS 276 (832)
Q Consensus 215 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~ 276 (832)
+..+++|+.|++++|++++..+ .+..+++|+.|+|++|.+++.
T Consensus 151 -------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 151 -------------------FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp -------------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred -------------------cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 4445555555555555554444 455556666666666666544
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-21 Score=201.38 Aligned_cols=132 Identities=26% Similarity=0.180 Sum_probs=73.8
Q ss_pred cccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEecc
Q 003307 355 YVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLS 434 (832)
Q Consensus 355 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 434 (832)
+|+.|+|++|.++ .+|..+..+++|++|++++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|+
T Consensus 78 ~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence 3455555555554 344455556666666666666665555556666666666666666666555555566666666666
Q ss_pred CCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcc
Q 003307 435 GNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEG 497 (832)
Q Consensus 435 ~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 497 (832)
+|++++..+..+... .+|+.|+|++|+|+ .+|..+..+.+|+.|+|++|++.+
T Consensus 157 ~N~l~~l~~~~~~~l---------~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 157 NNNLTELPAGLLNGL---------ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TSCCSCCCTTTTTTC---------TTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCcCCccCHHHhcCc---------CCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 666553222111111 12555555555555 445555566667777777776654
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.6e-22 Score=210.84 Aligned_cols=229 Identities=17% Similarity=0.133 Sum_probs=176.3
Q ss_pred CcEEEEEeCCCCCcccc--CcccccCCCCCCEEEcCCCCCcccCC-CC--CCCCCCCEEECCCCCCCccCc----ccccC
Q 003307 65 GYVTSIMLNDMGLVGNF--SFPTIIGLKMLCNVSVSNNQLMGNIT-DI--GSIQSLEFLDLSHNLFHGLIP----SGIVS 135 (832)
Q Consensus 65 ~~v~~l~l~~~~l~g~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~--~~l~~L~~L~Ls~N~l~~~~p----~~~~~ 135 (832)
..++.+.+.+..+.... ....+..+++|++|+|++|.+.+..| .+ ..+++|++|+|++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 35778888887765321 01123345779999999999999888 66 889999999999999997655 45567
Q ss_pred CCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCc--c--chhhhcCCCCCEEECccCcCccccCCCCCCCCCC
Q 003307 136 LKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGD--I--MHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFI 211 (832)
Q Consensus 136 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l 211 (832)
+++|++|+|++|.+++..|..|.++++|++|+|++|++.+. . +..+..+++|++|+|++|+++...+....-+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 99999999999999988889999999999999999998753 2 2234789999999999999973211100012345
Q ss_pred CCccEEECCCCCCeeccCCCCCCCCC---CCcCEEEccCCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCC
Q 003307 212 SSIQYLNISENSLVGELFPHDGMPYF---DNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMM 288 (832)
Q Consensus 212 ~~L~~L~L~~N~l~~~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~ 288 (832)
++|++|+|++|++++..|+. +..+ ++|+.|++++|+++.....+. ++|++|+|++|++++. |. + ..+++
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~--~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~--~~l~~ 295 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPS--APRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRA-PQ-P--DELPE 295 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSC--CSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSC-CC-T--TSCCC
T ss_pred CCCCEEECCCCCCCccchhh--HHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCC-ch-h--hhCCC
Confidence 89999999999998876655 5544 799999999999994433443 7999999999999853 43 2 46789
Q ss_pred CCEEECCCCCCCC
Q 003307 289 LSELDLSLNQLEG 301 (832)
Q Consensus 289 L~~L~L~~N~l~~ 301 (832)
|+.|++++|.++.
T Consensus 296 L~~L~L~~N~l~~ 308 (310)
T 4glp_A 296 VDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECSSTTTSC
T ss_pred ccEEECcCCCCCC
Confidence 9999999999874
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=9e-22 Score=201.41 Aligned_cols=198 Identities=16% Similarity=0.122 Sum_probs=147.4
Q ss_pred CCCCEEECCCCCCCccCcccccCCCCCCEEEccccc-ccccCCCCCCCCCCCCEeeCcC-CCCCCccchhhhcCCCCCEE
Q 003307 113 QSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNS-FEGTFPSGFGGLGKLKYLDLRA-NRFGGDIMHLLSQLGSVVHV 190 (832)
Q Consensus 113 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~l~~l~~L~~L 190 (832)
++|++|+|++|+|+++.+..|.++++|++|++++|. ++.+.+..|.++++|++|+|++ |++++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 489999999999999888899999999999999997 9988788999999999999999 99998888899999999999
Q ss_pred ECccCcCccccCCCCCCCCCCCCccEEECCCC-CCeeccCCCCCCCCCCCcC-EEEccCCcccccCC-CccccccccEEE
Q 003307 191 DLSNNQFSGSLDLGLGDSSFISSIQYLNISEN-SLVGELFPHDGMPYFDNLE-VFDASNNHLVGAIP-SFNFVFSLRILR 267 (832)
Q Consensus 191 ~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~-~~~~l~~L~~L~ 267 (832)
++++|.+++ +|. +..+..++.|++|++++| .+++..+.. |..+++|+ .|++++|.++...+ .+.. ++|+.|+
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~--~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNA--FQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTT--TTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEE
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCccc--ccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEE
Confidence 999999986 454 444433333448888888 777544433 77788888 88888888874444 3333 7788888
Q ss_pred ccccC-CCCCCChhhhhhCC-CCCCEEECCCCCCCCccCccCCCCCCEEEecC
Q 003307 268 LGSNQ-LSGSLPVALLQESS-MMLSELDLSLNQLEGPVGSITSATLKKVNLSS 318 (832)
Q Consensus 268 L~~N~-l~~~~p~~~~~~~~-~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~ 318 (832)
+++|+ ++ .+|...+ ..+ ++|+.|++++|++++..+. ...+|+.|++++
T Consensus 186 L~~n~~l~-~i~~~~~-~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~~ 235 (239)
T 2xwt_C 186 LNKNKYLT-VIDKDAF-GGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIARN 235 (239)
T ss_dssp CTTCTTCC-EECTTTT-TTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECTT
T ss_pred cCCCCCcc-cCCHHHh-hccccCCcEEECCCCccccCChh-HhccCceeeccC
Confidence 88884 76 3433322 334 5666666666666543222 333444444443
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=194.71 Aligned_cols=180 Identities=21% Similarity=0.207 Sum_probs=142.9
Q ss_pred CCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCc
Q 003307 90 KMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLR 169 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 169 (832)
...+.++++++.++..++.+. ++|++|+|++|.+++..+..|.++++|++|+|++|.|++..+..|.++++|++|+|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 356778888888876554554 578888888888888877788888888888888888887777778888888888888
Q ss_pred CCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCc
Q 003307 170 ANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNH 249 (832)
Q Consensus 170 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 249 (832)
+|++++..+..|..+++|++|+|++|++++..+ . .+..+++|+.|+|++|+
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------------------------~--~~~~l~~L~~L~Ls~N~ 142 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS---------------------------G--VFDRLTKLKELRLNTNQ 142 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------------------------T--TTTTCTTCCEEECCSSC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcCh---------------------------h--HhccCCcccEEECcCCc
Confidence 888887777777777777777777777763211 1 15667888999999999
Q ss_pred ccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCc
Q 003307 250 LVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGP 302 (832)
Q Consensus 250 l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~ 302 (832)
+++..+ .+..+++|++|+|++|++++..+..+ ..+++|+.|++++|.+++.
T Consensus 143 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 143 LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF--DRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSCCBCTT
T ss_pred CCccCHHHcCcCcCCCEEECCCCcCCccCHHHH--hCCCCCCEEEeeCCceeCC
Confidence 987777 78999999999999999996655555 5688999999999999875
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-22 Score=221.64 Aligned_cols=107 Identities=19% Similarity=0.167 Sum_probs=86.3
Q ss_pred EEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCc----ccccCCC-CCCEEEcccccccccCCCCCCCC-----CC
Q 003307 94 NVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIP----SGIVSLK-NLMLLNISSNSFEGTFPSGFGGL-----GK 162 (832)
Q Consensus 94 ~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~ 162 (832)
.++|+.|.+++.+| .+...++|++|||++|.|++..+ ..|..++ +|++|+|++|.|++..+..|..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 36788888888888 44555569999999999998877 7788888 89999999999998777777665 89
Q ss_pred CCEeeCcCCCCCCccchhhhc----C-CCCCEEECccCcCccc
Q 003307 163 LKYLDLRANRFGGDIMHLLSQ----L-GSVVHVDLSNNQFSGS 200 (832)
Q Consensus 163 L~~L~L~~N~l~~~~~~~l~~----l-~~L~~L~Ls~N~l~~~ 200 (832)
|++|+|++|++++..+..+.. + ++|++|+|++|.+++.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence 999999999998777765444 3 7888888888888743
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-20 Score=199.52 Aligned_cols=194 Identities=21% Similarity=0.274 Sum_probs=121.2
Q ss_pred ccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCE
Q 003307 86 IIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKY 165 (832)
Q Consensus 86 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 165 (832)
...+++|+.|++++|.+... +.+..+++|++|+|++|.+++..+ +..+++|++|+|++|.+++. ..+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccCc-hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 44567788888888877653 467778888888888888876544 77888888888888888753 35777888888
Q ss_pred eeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEc
Q 003307 166 LDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDA 245 (832)
Q Consensus 166 L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~L 245 (832)
|+|++|++++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++
T Consensus 112 L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l 180 (308)
T 1h6u_A 112 LDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP-----LAGLTNLQYLSIGNAQVSDLTP----LANLSKLTTLKA 180 (308)
T ss_dssp EECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEEC
T ss_pred EECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc-----ccCCCCccEEEccCCcCCCChh----hcCCCCCCEEEC
Confidence 8888888776432 7777777777777777764322 3334555555555555543211 344445555555
Q ss_pred cCCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeec
Q 003307 246 SNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLS 322 (832)
Q Consensus 246 s~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~ 322 (832)
++|.+++..+ +..+ ++|++|++++|++++..+....++|+.|++++|+++
T Consensus 181 ~~n~l~~~~~-l~~l--------------------------~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 181 DDNKISDISP-LASL--------------------------PNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CSSCCCCCGG-GGGC--------------------------TTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEE
T ss_pred CCCccCcChh-hcCC--------------------------CCCCEEEccCCccCccccccCCCCCCEEEccCCeee
Confidence 5555443222 3444 445555555555544443333445666666666665
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.2e-23 Score=226.81 Aligned_cols=91 Identities=24% Similarity=0.265 Sum_probs=57.2
Q ss_pred CCCCCCCCCEEECCCCCCCccCc----ccccCCCCCCEEEcccc---cccccCCCCC-------CCCCCCCEeeCcCCCC
Q 003307 108 DIGSIQSLEFLDLSHNLFHGLIP----SGIVSLKNLMLLNISSN---SFEGTFPSGF-------GGLGKLKYLDLRANRF 173 (832)
Q Consensus 108 ~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N---~l~~~~p~~~-------~~l~~L~~L~L~~N~l 173 (832)
.+..+++|++|+|++|.|++..+ ..|..+++|++|+|++| ++++.+|..+ ..+++|++|+|++|.+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 34556666667777666665433 33556666777777664 3333444433 5677777777777777
Q ss_pred CC----ccchhhhcCCCCCEEECccCcCc
Q 003307 174 GG----DIMHLLSQLGSVVHVDLSNNQFS 198 (832)
Q Consensus 174 ~~----~~~~~l~~l~~L~~L~Ls~N~l~ 198 (832)
+. .++..+..+++|++|+|++|.++
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 66 35666677777777777777765
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-22 Score=222.90 Aligned_cols=238 Identities=20% Similarity=0.257 Sum_probs=160.1
Q ss_pred ccccCCCCCCEEEcCCCCCcccC----C-CCCCCCCCCEEECCCC---CCCccCcccc-------cCCCCCCEEEccccc
Q 003307 84 PTIIGLKMLCNVSVSNNQLMGNI----T-DIGSIQSLEFLDLSHN---LFHGLIPSGI-------VSLKNLMLLNISSNS 148 (832)
Q Consensus 84 ~~~~~l~~L~~L~Ls~n~l~~~~----~-~~~~l~~L~~L~Ls~N---~l~~~~p~~~-------~~l~~L~~L~Ls~N~ 148 (832)
..+..+++|+.|+|++|.+.+.. + .+..+++|++|+|++| ++++.+|..+ ..+++|++|+|++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 45667888999999999887653 2 4778899999999886 4555666555 688999999999999
Q ss_pred ccc----cCCCCCCCCCCCCEeeCcCCCCCCccchhh----hcC---------CCCCEEECccCcCc-cccCCCCCCCCC
Q 003307 149 FEG----TFPSGFGGLGKLKYLDLRANRFGGDIMHLL----SQL---------GSVVHVDLSNNQFS-GSLDLGLGDSSF 210 (832)
Q Consensus 149 l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l----~~l---------~~L~~L~Ls~N~l~-~~~~~~~~~~~~ 210 (832)
+++ .+|..+..+++|++|+|++|.++...+..+ ..+ ++|++|+|++|+++ +.++.-...+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 887 466778888999999999998865444443 334 88999999998887 233311112233
Q ss_pred CCCccEEECCCCCCeec-----cCCCCCCCCCCCcCEEEccCCccc----ccCC-CccccccccEEEccccCCCCC----
Q 003307 211 ISSIQYLNISENSLVGE-----LFPHDGMPYFDNLEVFDASNNHLV----GAIP-SFNFVFSLRILRLGSNQLSGS---- 276 (832)
Q Consensus 211 l~~L~~L~L~~N~l~~~-----~~~~~~~~~l~~L~~L~Ls~N~l~----~~~~-~~~~l~~L~~L~L~~N~l~~~---- 276 (832)
+++|+.|+|++|.++.. .+.. +..+++|+.|+|++|.++ ..+| .+..+++|+.|+|++|++++.
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~--l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEG--LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTT--GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHH--hhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 46788888888887621 2213 667778888888888875 3444 567777888888888887754
Q ss_pred CChhhhhhCCCCCCEEECCCCCCCC----ccCc-c--CCCCCCEEEecCCeecc
Q 003307 277 LPVALLQESSMMLSELDLSLNQLEG----PVGS-I--TSATLKKVNLSSNKLSG 323 (832)
Q Consensus 277 ~p~~~~~~~~~~L~~L~L~~N~l~~----~~~~-~--~~~~L~~L~L~~N~l~~ 323 (832)
++..+....+++|+.|+|++|.+++ .++. . ..++|++|++++|++++
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 2333321235667777777777665 2221 1 13455555555555543
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=203.86 Aligned_cols=222 Identities=16% Similarity=0.070 Sum_probs=152.2
Q ss_pred CCCCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCc
Q 003307 52 GCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIP 130 (832)
Q Consensus 52 ~c~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p 130 (832)
.|.|+|..|.|+...+++ + |..+ .+++++|+|++|+|+...+ .|.++++|++|+|++|.+.+.+|
T Consensus 6 ~C~C~~~~v~C~~~~Lt~-----------i-P~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~ 71 (350)
T 4ay9_X 6 ICHCSNRVFLCQESKVTE-----------I-PSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 71 (350)
T ss_dssp SSEEETTEEEEESTTCCS-----------C-CTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEEC
T ss_pred ccEeeCCEEEecCCCCCc-----------c-CcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccC
Confidence 477777777775333332 2 2233 3578999999999998777 78999999999999999866554
Q ss_pred -ccccCCCCCCE-EEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECcc-CcCccccCCCCCC
Q 003307 131 -SGIVSLKNLML-LNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSN-NQFSGSLDLGLGD 207 (832)
Q Consensus 131 -~~~~~l~~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~ 207 (832)
..|.++++|++ +.++.|+|+.+.|..|.++++|++|++++|+++...+..+....++..|++.+ |++....+..+..
T Consensus 72 ~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~ 151 (350)
T 4ay9_X 72 ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151 (350)
T ss_dssp TTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT
T ss_pred hhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhh
Confidence 56888888775 66777899988888999999999999999999887777777777888888865 4555332222222
Q ss_pred CCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccC-CcccccCC-CccccccccEEEccccCCCCCCChhhhhhC
Q 003307 208 SSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASN-NHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQES 285 (832)
Q Consensus 208 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~ 285 (832)
+ ...++.|+|++|+|+. +++. .....+|+.|++++ |.++...+ .|..+++|++|+|++|+|+ .+|...
T Consensus 152 ~--~~~l~~L~L~~N~i~~-i~~~--~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~---- 221 (350)
T 4ay9_X 152 L--SFESVILWLNKNGIQE-IHNS--AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYG---- 221 (350)
T ss_dssp S--BSSCEEEECCSSCCCE-ECTT--SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSS----
T ss_pred c--chhhhhhccccccccC-CChh--hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhh----
Confidence 1 1357778888887764 3333 33456677777765 44443333 5677777777777777777 455432
Q ss_pred CCCCCEEECCCC
Q 003307 286 SMMLSELDLSLN 297 (832)
Q Consensus 286 ~~~L~~L~L~~N 297 (832)
+.+|+.|.+.++
T Consensus 222 ~~~L~~L~~l~~ 233 (350)
T 4ay9_X 222 LENLKKLRARST 233 (350)
T ss_dssp CTTCCEEECTTC
T ss_pred hccchHhhhccC
Confidence 334555555433
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-20 Score=196.97 Aligned_cols=194 Identities=20% Similarity=0.256 Sum_probs=168.1
Q ss_pred CcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEc
Q 003307 65 GYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNI 144 (832)
Q Consensus 65 ~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 144 (832)
..++.++++++++.. + +.+..+++|+.|+|++|.+.+..+ +..+++|++|+|++|.+++. ..+..+++|++|+|
T Consensus 41 ~~L~~L~l~~~~i~~-l--~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-I--EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC-C--TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC-c--hhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence 357889999988765 3 468899999999999999998776 99999999999999999975 36999999999999
Q ss_pred ccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCC
Q 003307 145 SSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSL 224 (832)
Q Consensus 145 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l 224 (832)
++|.+++. + .+.++++|++|+|++|++++..+ +..+++|++|+|++|.+++..+ +..+++|+.|++++|.+
T Consensus 115 ~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 115 TSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-----LANLSKLTTLKADDNKI 185 (308)
T ss_dssp TTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCC
T ss_pred CCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-----hcCCCCCCEEECCCCcc
Confidence 99999974 3 39999999999999999997665 8999999999999999985433 55679999999999999
Q ss_pred eeccCCCCCCCCCCCcCEEEccCCcccccCCCccccccccEEEccccCCCCCCCh
Q 003307 225 VGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPV 279 (832)
Q Consensus 225 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 279 (832)
++..+ +..+++|+.|++++|++++.. .+..+++|+.|++++|++++ .|.
T Consensus 186 ~~~~~----l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~-~~~ 234 (308)
T 1h6u_A 186 SDISP----LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITN-QPV 234 (308)
T ss_dssp CCCGG----GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEEC-CCE
T ss_pred CcChh----hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeec-CCe
Confidence 86432 778999999999999999766 47889999999999999973 443
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-20 Score=213.94 Aligned_cols=207 Identities=20% Similarity=0.281 Sum_probs=126.6
Q ss_pred ccCccccCCCCCCCCC---CCCcc-ccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCCCCCCCCCC
Q 003307 40 IDSWDTKSLSSDGCPR---NWFGI-TCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSL 115 (832)
Q Consensus 40 l~~w~~~~~~~~~c~~---~w~gv-~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L 115 (832)
+.+|... .++|.. .|.|+ .|...+++.|+|+++++.+ ++ ..+ +++|+.|+|++|.|+. +| ..+++|
T Consensus 33 l~~W~~~---~~~~~~~~~~~~~l~~C~~~~L~~L~Ls~n~L~~-lp-~~l--~~~L~~L~Ls~N~l~~-ip--~~l~~L 102 (571)
T 3cvr_A 33 WDKWEKQ---ALPGENRNEAVSLLKECLINQFSELQLNRLNLSS-LP-DNL--PPQITVLEITQNALIS-LP--ELPASL 102 (571)
T ss_dssp HHHHHTT---CCTTCCHHHHHHHHHHHHHTTCSEEECCSSCCSC-CC-SCC--CTTCSEEECCSSCCSC-CC--CCCTTC
T ss_pred HHHHhcc---CCccccccchhhhccccccCCccEEEeCCCCCCc-cC-HhH--cCCCCEEECcCCCCcc-cc--cccCCC
Confidence 5567542 345532 68998 6865567778888777776 42 233 3677777777777773 33 456777
Q ss_pred CEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccC
Q 003307 116 EFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNN 195 (832)
Q Consensus 116 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N 195 (832)
++|+|++|.|++ +|. |.+ +|++|+|++|.|++ +|. .+++|++|+|++|+|++ +|. .+++|++|+|++|
T Consensus 103 ~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 103 EYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNN 170 (571)
T ss_dssp CEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS
T ss_pred CEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCC
Confidence 777777777776 454 544 77777777777775 454 56777777777777765 333 4567777777777
Q ss_pred cCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCc-------CEEEccCCcccccCCCccccccccEEEc
Q 003307 196 QFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNL-------EVFDASNNHLVGAIPSFNFVFSLRILRL 268 (832)
Q Consensus 196 ~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-------~~L~Ls~N~l~~~~~~~~~l~~L~~L~L 268 (832)
++++ +|. +. ++|+.|+|++|.|+ .+|. +.. +| +.|+|++|+|+...+.+..+++|+.|+|
T Consensus 171 ~L~~-lp~-l~-----~~L~~L~Ls~N~L~-~lp~---~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 171 QLTF-LPE-LP-----ESLEALDVSTNLLE-SLPA---VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIIL 237 (571)
T ss_dssp CCSC-CCC-CC-----TTCCEEECCSSCCS-SCCC---CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEEC
T ss_pred CCCC-cch-hh-----CCCCEEECcCCCCC-chhh---HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEe
Confidence 7765 443 22 56677777777665 2332 221 44 5666666666532224444556666666
Q ss_pred cccCCCCCCChhh
Q 003307 269 GSNQLSGSLPVAL 281 (832)
Q Consensus 269 ~~N~l~~~~p~~~ 281 (832)
++|.+++.+|..+
T Consensus 238 ~~N~l~~~~p~~l 250 (571)
T 3cvr_A 238 EDNPLSSRIRESL 250 (571)
T ss_dssp CSSSCCHHHHHHH
T ss_pred eCCcCCCcCHHHH
Confidence 6666655555544
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-21 Score=210.50 Aligned_cols=81 Identities=16% Similarity=0.221 Sum_probs=42.4
Q ss_pred CCEEECCCCCCCccCcccccCC--CCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCc-cchhhhcCCCCCEEE
Q 003307 115 LEFLDLSHNLFHGLIPSGIVSL--KNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGD-IMHLLSQLGSVVHVD 191 (832)
Q Consensus 115 L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~ 191 (832)
++.|++++|.+. +..+..+ ++++.|++++|.+++..+. +..+++|++|+|++|.+++. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 445555555444 3344444 5555555555555544333 33455566666655555543 445555555555555
Q ss_pred CccCcCcc
Q 003307 192 LSNNQFSG 199 (832)
Q Consensus 192 Ls~N~l~~ 199 (832)
|++|.+++
T Consensus 125 L~~~~l~~ 132 (336)
T 2ast_B 125 LEGLRLSD 132 (336)
T ss_dssp CTTCBCCH
T ss_pred CcCcccCH
Confidence 55555543
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-19 Score=183.25 Aligned_cols=159 Identities=20% Similarity=0.268 Sum_probs=118.6
Q ss_pred CCCCCCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCcc
Q 003307 50 SDGCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGL 128 (832)
Q Consensus 50 ~~~c~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~ 128 (832)
+..|.|.|..|.|.. +++.. + |..+. ++|+.|+|++|.+++..+ .|..+++|++|+|++|.|+++
T Consensus 6 P~~C~C~~~~v~c~~----------~~l~~-i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~ 71 (220)
T 2v9t_B 6 PAACTCSNNIVDCRG----------KGLTE-I-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL 71 (220)
T ss_dssp CTTSEEETTEEECTT----------SCCSS-C-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE
T ss_pred CCCCEECCCEEEcCC----------CCcCc-C-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc
Confidence 456777887777753 33322 2 22222 578889999998888777 788888999999999998888
Q ss_pred CcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCC
Q 003307 129 IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDS 208 (832)
Q Consensus 129 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 208 (832)
.|..|.++++|++|+|++|.|+...+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|++++..+..+
T Consensus 72 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--- 148 (220)
T 2v9t_B 72 APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF--- 148 (220)
T ss_dssp CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT---
T ss_pred CHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH---
Confidence 88888888899999999998887766678888889999999988888888888888888888888888875443322
Q ss_pred CCCCCccEEECCCCCCe
Q 003307 209 SFISSIQYLNISENSLV 225 (832)
Q Consensus 209 ~~l~~L~~L~L~~N~l~ 225 (832)
..+++|+.|+|++|.+.
T Consensus 149 ~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 149 SPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTCTTCCEEECCSSCEE
T ss_pred hCCCCCCEEEeCCCCcC
Confidence 23355555555555543
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-19 Score=180.12 Aligned_cols=180 Identities=20% Similarity=0.221 Sum_probs=142.2
Q ss_pred EEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCc
Q 003307 334 IVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNH 413 (832)
Q Consensus 334 ~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 413 (832)
.++++.+.++..+.... .+|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|+
T Consensus 11 ~v~c~~~~l~~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGIP---AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCccCCCCCCC---CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 44445555444433222 268888888888887777778888999999999999987777778888999999999999
Q ss_pred ccccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCC
Q 003307 414 LNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNN 493 (832)
Q Consensus 414 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 493 (832)
+++..+..|..+++|++|+|++|++++..+..+.... +|++|+|++|++++..+..+..+++|+.|+|++|
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~---------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT---------QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCC---------cCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 9887777788899999999999998865443333222 4899999999999877777899999999999999
Q ss_pred cCcccCCCCccCCCcEEEcCCCccccccCccCCCCCC
Q 003307 494 KFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFPD 530 (832)
Q Consensus 494 ~l~g~ip~~~~~~L~~l~ls~N~l~g~~p~~~~~~~~ 530 (832)
++.+..| .|+.|+++.|+++|.+|..+...+.
T Consensus 159 ~~~~~~~-----~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 159 PWDCTCP-----GIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CBCCCTT-----TTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CeecCCC-----CHHHHHHHHHhCCceeeccCccccC
Confidence 9987664 5889999999999999988766554
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.80 E-value=9e-19 Score=189.85 Aligned_cols=218 Identities=16% Similarity=0.058 Sum_probs=159.5
Q ss_pred CEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCC-CCCCCCCCCCE-eeCcC
Q 003307 93 CNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFP-SGFGGLGKLKY-LDLRA 170 (832)
Q Consensus 93 ~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~L~~ 170 (832)
+.++.++++++..+..+ .+++++|+|++|+|+.+.+..|.++++|++|+|++|++.+.+| .+|.++++|++ +.++.
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 45667777787554455 4689999999999998877889999999999999999866554 57899999775 67778
Q ss_pred CCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCC-CCCeeccCCCCCCCCC-CCcCEEEccCC
Q 003307 171 NRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISE-NSLVGELFPHDGMPYF-DNLEVFDASNN 248 (832)
Q Consensus 171 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~l-~~L~~L~Ls~N 248 (832)
|+++...+..|..+++|++|++++|++++..+..+. ...++..|++.+ +++.. ++.. .|..+ ..++.|++++|
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~---~~~~l~~l~l~~~~~i~~-l~~~-~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI---HSLQKVLLDIQDNINIHT-IERN-SFVGLSFESVILWLNKN 164 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTC---CBSSCEEEEEESCTTCCE-ECTT-SSTTSBSSCEEEECCSS
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhc---ccchhhhhhhcccccccc-cccc-chhhcchhhhhhccccc
Confidence 999999999999999999999999999865443332 335677888865 45543 3332 25544 46888999999
Q ss_pred cccccCCCccccccccEEEccc-cCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCe
Q 003307 249 HLVGAIPSFNFVFSLRILRLGS-NQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNK 320 (832)
Q Consensus 249 ~l~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~ 320 (832)
+++...+......+|+.|++.+ |.++ .+|...+ ..+++|+.||+++|+|+...+ ....+|+.|.+.++.
T Consensus 165 ~i~~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f-~~l~~L~~LdLs~N~l~~lp~-~~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 165 GIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVF-HGASGPVILDISRTRIHSLPS-YGLENLKKLRARSTY 234 (350)
T ss_dssp CCCEECTTSSTTEEEEEEECTTCTTCC-CCCTTTT-TTEECCSEEECTTSCCCCCCS-SSCTTCCEEECTTCT
T ss_pred cccCCChhhccccchhHHhhccCCccc-CCCHHHh-ccCcccchhhcCCCCcCccCh-hhhccchHhhhccCC
Confidence 9987666555667888998875 4554 7776554 456778888888887775433 223456666555443
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.9e-19 Score=180.18 Aligned_cols=155 Identities=20% Similarity=0.175 Sum_probs=110.3
Q ss_pred CCCCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCc
Q 003307 52 GCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIP 130 (832)
Q Consensus 52 ~c~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p 130 (832)
.|.|+|.+|.|+...++. + |..+ .++|+.|+|++|.+++..+ .|..+++|++|+|++|+|+.+.+
T Consensus 16 ~~~Cs~~~v~c~~~~l~~-----------i-p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 81 (229)
T 3e6j_A 16 QCSCSGTTVDCRSKRHAS-----------V-PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV 81 (229)
T ss_dssp TCEEETTEEECTTSCCSS-----------C-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCEEeCCEeEccCCCcCc-----------c-CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcCh
Confidence 456699999997433222 2 1222 2678888888888888777 78888888888888888887776
Q ss_pred ccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCC
Q 003307 131 SGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSF 210 (832)
Q Consensus 131 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 210 (832)
..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|+ .+|..+..+++|++|+|++|++++..+.. +..
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~ 157 (229)
T 3e6j_A 82 GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA---FDR 157 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTT---TTT
T ss_pred hhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHH---HhC
Confidence 77788888888888888888777777888888888888888887 56677778888888888888777433222 223
Q ss_pred CCCccEEECCCCCC
Q 003307 211 ISSIQYLNISENSL 224 (832)
Q Consensus 211 l~~L~~L~L~~N~l 224 (832)
+++|+.|+|++|.+
T Consensus 158 l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 158 LSSLTHAYLFGNPW 171 (229)
T ss_dssp CTTCCEEECTTSCB
T ss_pred CCCCCEEEeeCCCc
Confidence 34444555544444
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-19 Score=178.32 Aligned_cols=162 Identities=20% Similarity=0.208 Sum_probs=136.4
Q ss_pred CCCCCCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC--CCCCCCCCCEEECCCCCCCc
Q 003307 50 SDGCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT--DIGSIQSLEFLDLSHNLFHG 127 (832)
Q Consensus 50 ~~~c~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~l~~L~~L~Ls~N~l~~ 127 (832)
++.|.|.|..+.| +++.+.. + |..+ ...++.|+|++|++++..+ .|..+++|++|+|++|.|++
T Consensus 6 P~~C~C~~~~l~~----------s~n~l~~-i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~ 71 (220)
T 2v70_A 6 PEKCRCEGTTVDC----------SNQKLNK-I-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD 71 (220)
T ss_dssp CTTCEEETTEEEC----------CSSCCSS-C-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE
T ss_pred CCCCEECCCEeEe----------CCCCccc-C-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE
Confidence 4567677765555 4555443 3 2233 2457899999999999865 48999999999999999999
Q ss_pred cCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCC
Q 003307 128 LIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGD 207 (832)
Q Consensus 128 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 207 (832)
+.+..|.++++|++|+|++|+|++..+..|.++++|++|+|++|+|++..|..|..+++|++|+|++|++++..|..+.
T Consensus 72 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~- 150 (220)
T 2v70_A 72 IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD- 150 (220)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT-
T ss_pred ECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc-
Confidence 9888999999999999999999988888899999999999999999999999999999999999999999987776554
Q ss_pred CCCCCCccEEECCCCCCeecc
Q 003307 208 SSFISSIQYLNISENSLVGEL 228 (832)
Q Consensus 208 ~~~l~~L~~L~L~~N~l~~~~ 228 (832)
.+++|+.|+|++|.+.+..
T Consensus 151 --~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 151 --TLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp --TCTTCCEEECCSCCEECSG
T ss_pred --CCCCCCEEEecCcCCcCCC
Confidence 4689999999999997644
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-18 Score=199.26 Aligned_cols=192 Identities=22% Similarity=0.255 Sum_probs=127.7
Q ss_pred CCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCC
Q 003307 288 MLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLT 367 (832)
Q Consensus 288 ~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~ 367 (832)
+++.|++++|.+++..+.. ..+|++|+|++|+|+ .+|..+.+|+.|++++|+|++... +.. +|+.|+|++|.|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~-~ip~~l~~L~~L~Ls~N~l~~ip~-l~~---~L~~L~Ls~N~l~ 133 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI-SLPELPASLEYLDACDNRLSTLPE-LPA---SLKHLDVDNNQLT 133 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS-CCCCCCTTCCEEECCSSCCSCCCC-CCT---TCCEEECCSSCCS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc-ccccccCCCCEEEccCCCCCCcch-hhc---CCCEEECCCCcCC
Confidence 4445555555544422112 244555555555555 344444566666666666666333 222 6888888888888
Q ss_pred CCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcccccCCcccc
Q 003307 368 GMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEI 447 (832)
Q Consensus 368 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 447 (832)
+ +|. .+++|+.|+|++|+|++ +|. .+++|++|+|++|+|++ +|. |. ++|+.|+|++|+|+ .+|. +.
T Consensus 134 ~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~ 199 (571)
T 3cvr_A 134 M-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VP 199 (571)
T ss_dssp C-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC
T ss_pred C-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HH
Confidence 7 454 57888889999998886 555 56788999999998887 444 54 88999999999888 5554 22
Q ss_pred cCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCcc
Q 003307 448 QNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLP 504 (832)
Q Consensus 448 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 504 (832)
. . +......|+.|+|++|+|+ .+|..+..+++|+.|+|++|+|++.+|..+.
T Consensus 200 ~--~--L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 200 V--R--NHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp ------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred H--h--hhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 2 1 1111112389999999998 5788888899999999999999888776543
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-19 Score=196.87 Aligned_cols=161 Identities=23% Similarity=0.138 Sum_probs=120.0
Q ss_pred CCCCEEEcCCCCCcccCC-CCC-CCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEee
Q 003307 90 KMLCNVSVSNNQLMGNIT-DIG-SIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLD 167 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~-~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 167 (832)
..++.|+|++|+|++..+ .+. .+++|++|+|++|+|+++.+..|.++++|++|+|++|+|++..+..|.++++|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 457888888888888777 566 888888888888888888778888888888888888888877777888888888888
Q ss_pred CcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccC
Q 003307 168 LRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASN 247 (832)
Q Consensus 168 L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~ 247 (832)
|++|+|++..+..|.++++|++|+|++|++++..+..+.. +..+++|+.|+|++
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~--------------------------~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD--------------------------GNKLPKLMLLDLSS 172 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC------------------------------CTTCCEEECCS
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcC--------------------------cccCCcCCEEECCC
Confidence 8888888877888888888888888888887422211111 13456677777777
Q ss_pred CcccccCC-Ccccccc--ccEEEccccCCCCC
Q 003307 248 NHLVGAIP-SFNFVFS--LRILRLGSNQLSGS 276 (832)
Q Consensus 248 N~l~~~~~-~~~~l~~--L~~L~L~~N~l~~~ 276 (832)
|++++..+ .+..++. |+.|+|++|.+...
T Consensus 173 N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp SCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred CCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 77765443 4555655 47788888888743
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-18 Score=182.42 Aligned_cols=173 Identities=21% Similarity=0.245 Sum_probs=124.9
Q ss_pred cccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCC
Q 003307 85 TIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLK 164 (832)
Q Consensus 85 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 164 (832)
.+..+++|+.|++++|.+... +.+..+++|++|+|++|.+++..+ +..+++|++|+|++|.+++. | .+..+++|+
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~ 115 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-S-SLKDLKKLK 115 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-G-GGTTCTTCC
T ss_pred chhhcCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-h-hhccCCCCC
Confidence 345677888888888887754 457778888888888888887654 88888888888888888753 3 478888888
Q ss_pred EeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEE
Q 003307 165 YLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFD 244 (832)
Q Consensus 165 ~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 244 (832)
+|+|++|++++. ..+..+++|++|++++|++++. ..+..+++|+.|++++|.+++..+ +..+++|+.|+
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~ 184 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLY 184 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCCEEE
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-----hhhccCCCCCEEEccCCccccchh----hcCCCccCEEE
Confidence 888888888764 4577888888888888887743 234455677777777777765332 55667777777
Q ss_pred ccCCcccccCCCccccccccEEEccccCCC
Q 003307 245 ASNNHLVGAIPSFNFVFSLRILRLGSNQLS 274 (832)
Q Consensus 245 Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~ 274 (832)
+++|.+++ ++.+..+++|+.|++++|+++
T Consensus 185 L~~N~i~~-l~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 185 LSKNHISD-LRALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCSSCCCB-CGGGTTCTTCSEEEEEEEEEE
T ss_pred CCCCcCCC-ChhhccCCCCCEEECcCCccc
Confidence 77777764 345666677777777777665
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.1e-18 Score=169.68 Aligned_cols=152 Identities=20% Similarity=0.182 Sum_probs=115.4
Q ss_pred CEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCc-ccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCC
Q 003307 93 CNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIP-SGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRAN 171 (832)
Q Consensus 93 ~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 171 (832)
+.+++++|.++..+..+. ..+++|+|++|.|++..+ ..|..+++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 479999999987544553 457899999999998855 45889999999999999999888889999999999999999
Q ss_pred CCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCccc
Q 003307 172 RFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLV 251 (832)
Q Consensus 172 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 251 (832)
++++..+..|..+++|++|+|++|++++..|..+. .+++|++|+|++|++++..+.. |..+++|+.|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI---GLSSVRLLSLYDNQITTVAPGA--FDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST---TCTTCSEEECTTSCCCCBCTTT--TTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC---CCccCCEEECCCCcCCEECHHH--hcCCCCCCEEEecCcCCc
Confidence 99999998999999999999999999866554433 2355555555555555443333 444444444444444444
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.7e-18 Score=169.86 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=114.5
Q ss_pred CEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCC
Q 003307 93 CNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANR 172 (832)
Q Consensus 93 ~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 172 (832)
+.++++++.++..+..+. ++|++|+|++|.|+++.+..|..+++|++|+|++|+|++..|..|.++++|++|+|++|+
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 468888888886654554 789999999999998888899999999999999999998889999999999999999999
Q ss_pred CCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCccc
Q 003307 173 FGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLV 251 (832)
Q Consensus 173 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 251 (832)
|+...+..|.++++|++|+|++|++++..+..+. .+++|+.|+|++|.+++..+.. +..+++|+.|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ---DLHNLNLLSLYDNKLQTIAKGT--FSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT---TCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcC---CCCCCCEEECCCCcCCEECHHH--HhCCCCCCEEEeCCCCcC
Confidence 9988778888899999999999988865444332 3355555555555554433222 444444444444444443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-18 Score=198.03 Aligned_cols=174 Identities=22% Similarity=0.242 Sum_probs=138.3
Q ss_pred cccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCC
Q 003307 85 TIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLK 164 (832)
Q Consensus 85 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 164 (832)
.+..|++|+.|+|++|.+... +.+..+++|+.|+|++|.|++..| |..+++|+.|+|++|.|++. ..|..+++|+
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 112 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLK 112 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCC-TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCC
T ss_pred chhcCCCCCEEECcCCCCCCC-hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCC
Confidence 356678888899999888754 468888999999999999987755 88899999999999998853 3688899999
Q ss_pred EeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEE
Q 003307 165 YLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFD 244 (832)
Q Consensus 165 ~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 244 (832)
+|+|++|++++. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..+ +..+++|+.|+
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-----~~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~ 181 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLY 181 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-----GGGGSCTTCSEEECCSSCCCCCGG----GTTCTTCCEEE
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-----hhhcccCCCCEEECcCCcCCCchh----hccCCCCCEEE
Confidence 999999998864 4588889999999999988853 334556788888888888876543 66778888888
Q ss_pred ccCCcccccCCCccccccccEEEccccCCCC
Q 003307 245 ASNNHLVGAIPSFNFVFSLRILRLGSNQLSG 275 (832)
Q Consensus 245 Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~ 275 (832)
|++|++++. +.+..+++|+.|+|++|++.+
T Consensus 182 Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 182 LSKNHISDL-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCSSCCCBC-GGGTTCTTCSEEECCSEEEEC
T ss_pred CcCCCCCCC-hHHccCCCCCEEEccCCcCcC
Confidence 888888754 567778888888888888764
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.75 E-value=8.2e-18 Score=194.07 Aligned_cols=166 Identities=17% Similarity=0.272 Sum_probs=92.9
Q ss_pred CCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCC
Q 003307 92 LCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRAN 171 (832)
Q Consensus 92 L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 171 (832)
+..+.+..+.+.... .+..+++|+.|+|++|.|+.. | .|..+++|+.|+|++|.|++..| |..+++|++|+|++|
T Consensus 23 l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred HHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence 444555555555433 345566777777777777644 2 46667777777777777775444 667777777777777
Q ss_pred CCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCccc
Q 003307 172 RFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLV 251 (832)
Q Consensus 172 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 251 (832)
.+++. ..+..+++|++|+|++|.+++. ..+..+++|+.|+|++|.+++. +. +..+++|+.|+|++|.+.
T Consensus 98 ~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-----~~l~~l~~L~~L~Ls~N~l~~l--~~--l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 98 KIKDL--SSLKDLKKLKSLSLEHNGISDI-----NGLVHLPQLESLYLGNNKITDI--TV--LSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp CCCCC--TTSTTCTTCCEEECTTSCCCCC-----GGGGGCTTCSEEECCSSCCCCC--GG--GGSCTTCSEEECCSSCCC
T ss_pred CCCCC--hhhccCCCCCEEEecCCCCCCC-----ccccCCCccCEEECCCCccCCc--hh--hcccCCCCEEECcCCcCC
Confidence 76642 2466666666666666666531 1233345555555555555432 11 444444555555555444
Q ss_pred ccCCCccccccccEEEccccCCC
Q 003307 252 GAIPSFNFVFSLRILRLGSNQLS 274 (832)
Q Consensus 252 ~~~~~~~~l~~L~~L~L~~N~l~ 274 (832)
+..| +..+++|+.|+|++|+|+
T Consensus 167 ~~~~-l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 167 DIVP-LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp CCGG-GTTCTTCCEEECCSSCCC
T ss_pred Cchh-hccCCCCCEEECcCCCCC
Confidence 4333 444444444444444444
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-17 Score=166.86 Aligned_cols=151 Identities=20% Similarity=0.173 Sum_probs=108.4
Q ss_pred CEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCC
Q 003307 93 CNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANR 172 (832)
Q Consensus 93 ~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 172 (832)
+.++.+++.+...+..+. ++|++|+|++|.|+++.|..|.++++|++|+|++|+|+...+..|.++++|++|+|++|+
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 345666666665444443 889999999999999989999999999999999999987777788999999999999999
Q ss_pred CCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCccc
Q 003307 173 FGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLV 251 (832)
Q Consensus 173 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 251 (832)
|++..+..|..+++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++..+.. +..+++|+.|++++|.+.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~---~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE---RLTHLTHLALDQNQLKSIPHGA--FDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG---GCTTCSEEECCSSCCCCCCTTT--TTTCTTCCEEECTTSCBC
T ss_pred CCccChhHhCcchhhCeEeccCCccc-ccCcccc---cCCCCCEEECCCCcCCccCHHH--HhCCCCCCEEEeeCCCcc
Confidence 99888888889999999999999887 4444332 2345555555555554322211 344444444444444443
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.74 E-value=6.6e-18 Score=177.78 Aligned_cols=166 Identities=17% Similarity=0.273 Sum_probs=107.8
Q ss_pred CCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCC
Q 003307 92 LCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRAN 171 (832)
Q Consensus 92 L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 171 (832)
+..+.+..+.+.+.. .+..+++|++|++++|.++.. + .+..+++|++|+|++|++++..+ +.++++|++|+|++|
T Consensus 26 ~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHHTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred HHHHHhcCCCccccc-chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence 344456666665432 345678888888888888865 3 47888888888888888886544 888888888888888
Q ss_pred CCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCccc
Q 003307 172 RFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLV 251 (832)
Q Consensus 172 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 251 (832)
++++. ..+..+++|++|+|++|++++. ..+..+++|+.|++++|.+++. +. +..+++|+.|++++|.++
T Consensus 101 ~l~~~--~~l~~l~~L~~L~L~~n~i~~~-----~~l~~l~~L~~L~l~~n~l~~~--~~--l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 101 KVKDL--SSLKDLKKLKSLSLEHNGISDI-----NGLVHLPQLESLYLGNNKITDI--TV--LSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp CCCCG--GGGTTCTTCCEEECTTSCCCCC-----GGGGGCTTCCEEECCSSCCCCC--GG--GGGCTTCSEEECCSSCCC
T ss_pred cCCCC--hhhccCCCCCEEECCCCcCCCC-----hhhcCCCCCCEEEccCCcCCcc--hh--hccCCCCCEEEccCCccc
Confidence 88763 3377888888888888887742 2233445666666666665542 11 445555555555555555
Q ss_pred ccCCCccccccccEEEccccCCC
Q 003307 252 GAIPSFNFVFSLRILRLGSNQLS 274 (832)
Q Consensus 252 ~~~~~~~~l~~L~~L~L~~N~l~ 274 (832)
+..+ +..+++|+.|++++|+++
T Consensus 170 ~~~~-l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 170 DIVP-LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp CCGG-GTTCTTCCEEECCSSCCC
T ss_pred cchh-hcCCCccCEEECCCCcCC
Confidence 4333 444555555555555554
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=181.77 Aligned_cols=180 Identities=24% Similarity=0.242 Sum_probs=114.8
Q ss_pred CEEEecCCeecccCCCCCC-CCCEEecCCCCCcCcchhhcc-ccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCc
Q 003307 312 KKVNLSSNKLSGSLPARVG-HCTIVDLSNNRLSGDLSRMQN-WGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNS 389 (832)
Q Consensus 312 ~~L~L~~N~l~~~~p~~l~-~l~~L~L~~N~l~~~~~~~~~-~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 389 (832)
+.+++++|+++. +|..+. .++.|+|++|+|++..+..+. ...+|+.|+|++|.|+++.+..|.++++|++|+|++|+
T Consensus 21 ~~l~c~~~~l~~-iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSS-CCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCc-cCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 455555555552 343332 345566666666555554443 44567777777777777777777777777777777777
Q ss_pred CCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCC
Q 003307 390 LEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYN 469 (832)
Q Consensus 390 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N 469 (832)
|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|+|++ +|...... .....+|+.|||++|
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~-----~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKD-----GNKLPKLMLLDLSSN 173 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC---------CTTCCEEECCSS
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcC-----cccCCcCCEEECCCC
Confidence 776666677777777777777777777777777777777777777777764 33322110 001123777777777
Q ss_pred cCcccCChhhhcCCC--CCEEeCcCCcCccc
Q 003307 470 SLSGRLLPGISKFHN--LVYLNLSNNKFEGS 498 (832)
Q Consensus 470 ~l~~~~p~~l~~l~~--L~~L~Ls~N~l~g~ 498 (832)
+|++..+..+..++. |+.|+|++|++.+.
T Consensus 174 ~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 174 KLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred CCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 777655556666665 36677777776643
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.8e-18 Score=165.94 Aligned_cols=138 Identities=22% Similarity=0.315 Sum_probs=108.0
Q ss_pred CCCCCCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCCC--CCCCCCCCEEECCCCCCCc
Q 003307 50 SDGCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITD--IGSIQSLEFLDLSHNLFHG 127 (832)
Q Consensus 50 ~~~c~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~l~~L~~L~Ls~N~l~~ 127 (832)
+..|.|.|..+.| +++++. .+| ..+. .+|+.|+|++|.+++..+. |+.+++|++|+|++|.|++
T Consensus 3 P~~C~C~~~~l~~----------s~~~l~-~ip-~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 68 (192)
T 1w8a_A 3 PAMCHCEGTTVDC----------TGRGLK-EIP-RDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 68 (192)
T ss_dssp CTTSEEETTEEEC----------TTSCCS-SCC-SCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC
T ss_pred CCCCEECCCEEEc----------CCCCcC-cCc-cCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC
Confidence 3567777765555 444442 332 2232 3788899999988887762 7888889999999998888
Q ss_pred cCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCcccc
Q 003307 128 LIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSL 201 (832)
Q Consensus 128 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 201 (832)
..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|+|++..|..|..+++|++|+|++|.+++..
T Consensus 69 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 69 IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp BCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred cCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 88888888888999999999988888888888888888888888888888888888888888888888887543
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.5e-19 Score=207.58 Aligned_cols=203 Identities=16% Similarity=0.123 Sum_probs=79.4
Q ss_pred HHHHHHHHHhhhcCCCCCCcccccCccccCCCCCCCCCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEc
Q 003307 18 QSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSV 97 (832)
Q Consensus 18 ~~~~~~l~~~k~~~~~~~~~~~l~~w~~~~~~~~~c~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~L 97 (832)
..++++|+++.......... .-..|.... .. .+.|.++.++..+++.++|..+++... ....|+.++|
T Consensus 131 ~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~--~~--~~~~~~~~~s~~~~~~l~L~~n~~~~~-------~~~~l~~l~L 198 (727)
T 4b8c_D 131 DCTKQALMEMADTLTDSKTA-KKQQPTGDS--TP--SGTATNSAVSTPLTPKIELFANGKDEA-------NQALLQHKKL 198 (727)
T ss_dssp -CCCHHHHHHHHHHHHHHTT-C----------------------------------------------------------
T ss_pred ccchhhhhhhhhhcccccCc-ccCCCcCCC--Cc--cccCCCceecCCccceEEeeCCCCCcc-------hhhHhhcCcc
Confidence 45678888888765211101 122343221 12 237988888888888888887776542 1233555666
Q ss_pred CCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCcc
Q 003307 98 SNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDI 177 (832)
Q Consensus 98 s~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 177 (832)
+.|.|. .++++.|.+. ..|..|..++.|+.|+|++|.+. .+|..+.++++|++|+|++|+|+ .+
T Consensus 199 s~~~i~-------------~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~l 262 (727)
T 4b8c_D 199 SQYSID-------------EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-EL 262 (727)
T ss_dssp -------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CC
T ss_pred Cccccc-------------Ccccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-cc
Confidence 665543 3455556555 55667777777777777777777 45666667777777777777777 56
Q ss_pred chhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC
Q 003307 178 MHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP 255 (832)
Q Consensus 178 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 255 (832)
|..|.++++|++|+|++|.|+ .+|..++. +++|++|+|++|.|+ .+|.. |..+++|+.|+|++|.+++.+|
T Consensus 263 p~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~---l~~L~~L~L~~N~l~-~lp~~--~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 263 PAEIKNLSNLRVLDLSHNRLT-SLPAELGS---CFQLKYFYFFDNMVT-TLPWE--FGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp CGGGGGGTTCCEEECTTSCCS-SCCSSGGG---GTTCSEEECCSSCCC-CCCSS--TTSCTTCCCEECTTSCCCSHHH
T ss_pred ChhhhCCCCCCEEeCcCCcCC-ccChhhcC---CCCCCEEECCCCCCC-ccChh--hhcCCCccEEeCCCCccCCCCh
Confidence 667777777777777777776 44544332 244444444444443 23333 4445555555555555554444
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-17 Score=163.65 Aligned_cols=153 Identities=19% Similarity=0.240 Sum_probs=112.4
Q ss_pred ccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCE
Q 003307 86 IIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKY 165 (832)
Q Consensus 86 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 165 (832)
...+++|+.|++++|.+.. ++.+..+++|++|++++|.++.. ..+..+++|++|++++|.+++..+..|.++++|++
T Consensus 40 ~~~l~~L~~L~l~~n~i~~-l~~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTD-LTGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHHTCCEEEEESSCCSC-CTTGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhhcCCccEEeccCCCccC-hHHHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 3567789999999999984 34788899999999999977643 47889999999999999999888889999999999
Q ss_pred eeCcCCCCCCccchhhhcCCCCCEEECccCc-CccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEE
Q 003307 166 LDLRANRFGGDIMHLLSQLGSVVHVDLSNNQ-FSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFD 244 (832)
Q Consensus 166 L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 244 (832)
|+|++|++++..+..+..+++|++|++++|. ++ .++ .+..+++|+.|++++|.+++.. . +..+++|+.|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~----~l~~l~~L~~L~l~~n~i~~~~--~--l~~l~~L~~L~ 187 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM----PLKTLPELKSLNIQFDGVHDYR--G--IEDFPKLNQLY 187 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG----GGGGCSSCCEEECTTBCCCCCT--T--GGGCSSCCEEE
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH----hhcCCCCCCEEECCCCCCcChH--H--hccCCCCCEEE
Confidence 9999999988888889999999999999997 54 222 2233455555555555554311 1 33444444444
Q ss_pred ccCCcc
Q 003307 245 ASNNHL 250 (832)
Q Consensus 245 Ls~N~l 250 (832)
+++|++
T Consensus 188 l~~N~i 193 (197)
T 4ezg_A 188 AFSQTI 193 (197)
T ss_dssp ECBC--
T ss_pred eeCccc
Confidence 444443
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-17 Score=160.01 Aligned_cols=138 Identities=21% Similarity=0.202 Sum_probs=109.9
Q ss_pred CCCCCCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCcc
Q 003307 50 SDGCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGL 128 (832)
Q Consensus 50 ~~~c~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~ 128 (832)
++.|.|+|.++.|+...++. + +. .-.++|+.|++++|++++..+ .+..+++|++|+|++|.|++.
T Consensus 2 p~~C~C~~~~l~~~~~~l~~-----------~-p~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 67 (177)
T 2o6r_A 2 PSRCSCSGTEIRCNSKGLTS-----------V-PT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL 67 (177)
T ss_dssp CTTCEEETTEEECCSSCCSS-----------C-CT--TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred cCCCEeCCCEEEecCCCCcc-----------C-CC--CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe
Confidence 35688899988886433222 1 11 123688999999999987776 678899999999999999888
Q ss_pred CcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCcccc
Q 003307 129 IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSL 201 (832)
Q Consensus 129 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 201 (832)
.+..|..+++|++|+|++|+|++..+..|.++++|++|+|++|++++..+..+..+++|++|+|++|.+++..
T Consensus 68 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 68 PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 7777888999999999999998877777888999999999999998777777788888888888888887543
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.2e-18 Score=174.18 Aligned_cols=165 Identities=16% Similarity=0.264 Sum_probs=69.4
Q ss_pred CCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCC
Q 003307 92 LCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRAN 171 (832)
Q Consensus 92 L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 171 (832)
+..++++.|.+++.. .+..+++|++|++++|.|+.. | .+..+++|++|+|++|+|++..+ |.++++|++|+|++|
T Consensus 21 l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred HHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC
Confidence 333444444443322 333444444444444444422 2 34444444444444444443322 444444444444444
Q ss_pred CCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCccc
Q 003307 172 RFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLV 251 (832)
Q Consensus 172 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 251 (832)
++++..+ +.. ++|++|+|++|++++. ..+..+++|+.|++++|++++. + . +..+++|+.|++++|+++
T Consensus 96 ~l~~l~~--~~~-~~L~~L~L~~N~l~~~-----~~l~~l~~L~~L~Ls~N~i~~~-~-~--l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 96 RLKNLNG--IPS-ACLSRLFLDNNELRDT-----DSLIHLKNLEILSIRNNKLKSI-V-M--LGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp CCSCCTT--CCC-SSCCEEECCSSCCSBS-----GGGTTCTTCCEEECTTSCCCBC-G-G--GGGCTTCCEEECTTSCCC
T ss_pred ccCCcCc--ccc-CcccEEEccCCccCCC-----hhhcCcccccEEECCCCcCCCC-h-H--HccCCCCCEEECCCCcCc
Confidence 4443211 111 4444444444444421 1122334444444444444332 1 1 444455555555555554
Q ss_pred ccCCCccccccccEEEccccCCC
Q 003307 252 GAIPSFNFVFSLRILRLGSNQLS 274 (832)
Q Consensus 252 ~~~~~~~~l~~L~~L~L~~N~l~ 274 (832)
+. +.+..+++|+.|++++|.++
T Consensus 164 ~~-~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 164 NT-GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp BC-TTSTTCCCCCEEEEEEEEEE
T ss_pred ch-HHhccCCCCCEEeCCCCccc
Confidence 43 44444555555555555554
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=7.3e-17 Score=158.54 Aligned_cols=161 Identities=19% Similarity=0.241 Sum_probs=102.2
Q ss_pred cEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCccc-ccCCCCCCCEEEccCCcccccCcccccCCCCCCeEeccC
Q 003307 357 EDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPA-VLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSG 435 (832)
Q Consensus 357 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 435 (832)
+.+++++|.++ .+|..+.. +|++|++++|+|++..+. .|..+++|++|+|++|+|++..|..|..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 55666666664 34443322 667777777777655443 366677777777777777776666777777777777777
Q ss_pred CcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcccCCCCcc-CCCcEEEcCC
Q 003307 436 NNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLP-NGLKEFNVSF 514 (832)
Q Consensus 436 N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~~L~~l~ls~ 514 (832)
|+|++..|..+.... +|++|+|++|+|++.+|..+..+++|+.|+|++|++++..+.... ..++...+..
T Consensus 88 N~l~~~~~~~~~~l~---------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~ 158 (192)
T 1w8a_A 88 NKIKEISNKMFLGLH---------QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNG 158 (192)
T ss_dssp CCCCEECSSSSTTCT---------TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSG
T ss_pred CcCCccCHHHhcCCC---------CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCC
Confidence 777665554333222 377777777777777778888888888888888888877653221 2233334445
Q ss_pred CccccccCccCCCCC
Q 003307 515 NNLSGVVPENLRNFP 529 (832)
Q Consensus 515 N~l~g~~p~~~~~~~ 529 (832)
+...+..|..++..+
T Consensus 159 ~~~~C~~P~~l~~~~ 173 (192)
T 1w8a_A 159 GAARCGAPSKVRDVQ 173 (192)
T ss_dssp GGCBBCSSTTTTTSB
T ss_pred CCCCCCCChHHcCCC
Confidence 555666666554443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.6e-19 Score=202.66 Aligned_cols=204 Identities=20% Similarity=0.104 Sum_probs=121.1
Q ss_pred CCCCCcCEEEccCCcccccCCCccccccccEEEccccC-------------CCCCCChhhhhhCCCCCCEEE-CCCCCCC
Q 003307 235 PYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQ-------------LSGSLPVALLQESSMMLSELD-LSLNQLE 300 (832)
Q Consensus 235 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~-------------l~~~~p~~~~~~~~~~L~~L~-L~~N~l~ 300 (832)
..+++|+.|+|++|+++..++.++.+++|+.|++++|. +.+..|..+ ..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l--~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETL--QYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHH--HHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHH--HHHHhcccCcchhhcccc
Confidence 45667777788888776433377777778888776664 233333333 2233344444 3333221
Q ss_pred CccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCC
Q 003307 301 GPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRL 380 (832)
Q Consensus 301 ~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L 380 (832)
.|..+.+++|.++ ...+ ..|+.|+|++|.|++ +|. +..+++|
T Consensus 424 ---------~L~~l~l~~n~i~---------------------~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L 465 (567)
T 1dce_A 424 ---------DLRSKFLLENSVL---------------------KMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLV 465 (567)
T ss_dssp ---------HHHHHHHHHHHHH---------------------HHHH------TTCSEEECTTSCCSS-CCC-GGGGTTC
T ss_pred ---------hhhhhhhhccccc---------------------ccCc------cCceEEEecCCCCCC-CcC-ccccccC
Confidence 1222233333333 2111 136667777777765 344 6677777
Q ss_pred CEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcccccC-CcccccCCCCCcccCcc
Q 003307 381 TSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPL-PLQEIQNNPSTGSTQNL 459 (832)
Q Consensus 381 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~~~~~~~~~~~~ 459 (832)
+.|+|++|+|+ .+|..++.+++|+.|+|++|+|++ +| .+..+++|+.|+|++|+|++.+ |..+..+..
T Consensus 466 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~-------- 534 (567)
T 1dce_A 466 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR-------- 534 (567)
T ss_dssp CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT--------
T ss_pred cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCC--------
Confidence 77777777777 566677777777777777777776 34 6677777777777777777665 655544432
Q ss_pred cccEEEccCCcCcccCCh---hhhcCCCCCEEeC
Q 003307 460 SLTSLDLAYNSLSGRLLP---GISKFHNLVYLNL 490 (832)
Q Consensus 460 ~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~L 490 (832)
|+.|+|++|+|++.+|. .+..+++|+.||+
T Consensus 535 -L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 535 -LVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -CCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 77777777777765442 2345788888865
|
| >4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-16 Score=168.07 Aligned_cols=86 Identities=22% Similarity=0.435 Sum_probs=75.6
Q ss_pred cCeeeeccCceEEEEEEC------CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.+.||+|+||+||+|++. +|..||||+++.......++|.+|+++|++++|||||+++|+|.+.+. .+||||
T Consensus 18 ~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~--~~lV~E 95 (299)
T 4asz_A 18 KRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDP--LIMVFE 95 (299)
T ss_dssp EEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS--EEEEEE
T ss_pred eeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCE--EEEEEE
Confidence 568999999999999863 578899999987666667889999999999999999999999998877 999999
Q ss_pred cCCCCCHHHHHhcC
Q 003307 811 YINAQSLAVYLQGK 824 (832)
Q Consensus 811 ~~~~GsL~~~l~~~ 824 (832)
||++|+|.++|+..
T Consensus 96 y~~~G~L~~~l~~~ 109 (299)
T 4asz_A 96 YMKHGDLNKFLRAH 109 (299)
T ss_dssp CCTTCBHHHHHHHT
T ss_pred cCCCCcHHHHHHhc
Confidence 99999999999864
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-19 Score=204.32 Aligned_cols=63 Identities=13% Similarity=0.055 Sum_probs=36.0
Q ss_pred cCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCC-------------CCCccchhhhcCCCCCEEE-CccCcC
Q 003307 134 VSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANR-------------FGGDIMHLLSQLGSVVHVD-LSNNQF 197 (832)
Q Consensus 134 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-------------l~~~~~~~l~~l~~L~~L~-Ls~N~l 197 (832)
..+++|+.|+|++|+|+ .+|..++++++|+.|++++|. +.+.+|..++.+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence 34555666666666665 445556666666666665443 3445566666666666666 454443
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=164.79 Aligned_cols=164 Identities=18% Similarity=0.231 Sum_probs=136.9
Q ss_pred EEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccc
Q 003307 70 IMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSF 149 (832)
Q Consensus 70 l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 149 (832)
++++.+.+.+. +.+..+++|+.|++++|.++.. +.+..+++|++|+|++|.|++..+ |..+++|++|+|++|++
T Consensus 24 l~l~~~~i~~~---~~~~~l~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 24 QNLGKQSVTDL---VSQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRL 97 (263)
T ss_dssp HHHTCSCTTSE---ECHHHHTTCSEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCC
T ss_pred HHhcCCCcccc---cchhhcCcCcEEECcCCCcccc-hHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCcc
Confidence 34455554432 3577889999999999999864 478899999999999999998765 99999999999999999
Q ss_pred cccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccC
Q 003307 150 EGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELF 229 (832)
Q Consensus 150 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 229 (832)
++. |. +.. ++|++|+|++|++++. ..+..+++|++|+|++|++++. + .+..+++|+.|++++|.+++.
T Consensus 98 ~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~----~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 98 KNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V----MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp SCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G----GGGGCTTCCEEECTTSCCCBC--
T ss_pred CCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h----HHccCCCCCEEECCCCcCcch--
Confidence 964 43 333 9999999999999874 3589999999999999999864 2 355679999999999999876
Q ss_pred CCCCCCCCCCcCEEEccCCccccc
Q 003307 230 PHDGMPYFDNLEVFDASNNHLVGA 253 (832)
Q Consensus 230 ~~~~~~~l~~L~~L~Ls~N~l~~~ 253 (832)
.. +..+++|+.|++++|.++..
T Consensus 166 ~~--l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 GG--LTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TT--STTCCCCCEEEEEEEEEECC
T ss_pred HH--hccCCCCCEEeCCCCcccCC
Confidence 33 88999999999999999865
|
| >4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-16 Score=168.98 Aligned_cols=86 Identities=22% Similarity=0.406 Sum_probs=77.5
Q ss_pred cCeeeeccCceEEEEEEC------CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.+.||+|+||+||+|++. +|+.||||+++.......++|.+|+++|++++|||||+++|+|.+.+. .+||||
T Consensus 46 ~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~--~~lV~E 123 (329)
T 4aoj_A 46 KWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRP--LLMVFE 123 (329)
T ss_dssp EEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS--EEEEEE
T ss_pred EEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE--EEEEEE
Confidence 567999999999999863 578999999987766667889999999999999999999999998877 999999
Q ss_pred cCCCCCHHHHHhcC
Q 003307 811 YINAQSLAVYLQGK 824 (832)
Q Consensus 811 ~~~~GsL~~~l~~~ 824 (832)
||++|+|.++|+..
T Consensus 124 y~~~G~L~~~l~~~ 137 (329)
T 4aoj_A 124 YMRHGDLNRFLRSH 137 (329)
T ss_dssp CCTTCBHHHHHHTS
T ss_pred cCCCCcHHHHHHhc
Confidence 99999999999864
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-16 Score=156.98 Aligned_cols=109 Identities=21% Similarity=0.318 Sum_probs=80.5
Q ss_pred CCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCc
Q 003307 90 KMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLR 169 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 169 (832)
++|+.|+|++|.++.....|..+++|++|+|++|.|+++.+..|.++++|++|+|++|+|++..|..|.++++|++|+|+
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 46777777777776433367777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCCccchhhhcCCCCCEEECccCcCc
Q 003307 170 ANRFGGDIMHLLSQLGSVVHVDLSNNQFS 198 (832)
Q Consensus 170 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 198 (832)
+|+|+...+..|..+++|++|+|++|.+.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 77777666666777777777777777765
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.9e-16 Score=152.82 Aligned_cols=152 Identities=14% Similarity=0.213 Sum_probs=81.9
Q ss_pred ccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecC
Q 003307 259 FVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLS 338 (832)
Q Consensus 259 ~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~ 338 (832)
.+++|+.|++++|.++ .+| .+ ..+++|++|++++|.++........++|++|++++|++++..|..+..++
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l--~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~----- 112 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GI--EYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT----- 112 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TG--GGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT-----
T ss_pred hcCCccEEeccCCCcc-ChH-HH--hcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCC-----
Confidence 3445555555555554 333 22 23444555555544443322222234455555555555544444444333
Q ss_pred CCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCc-CCCCcccccCCCCCCCEEEccCCccccc
Q 003307 339 NNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNS-LEGDLPAVLGTYPELKVIDLSLNHLNGF 417 (832)
Q Consensus 339 ~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 417 (832)
+|+.|++++|.+++..|..+..+++|++|++++|+ ++ .+| .+..+++|+.|++++|++++.
T Consensus 113 ----------------~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 113 ----------------SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp ----------------TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC
T ss_pred ----------------CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh
Confidence 56666666666666566666666667777777666 44 344 466666677777777666653
Q ss_pred CcccccCCCCCCeEeccCCccc
Q 003307 418 LLPSFFTSTKLTDLNLSGNNFS 439 (832)
Q Consensus 418 ~~~~~~~l~~L~~L~Ls~N~l~ 439 (832)
. .+..+++|+.|++++|++.
T Consensus 175 ~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 175 R--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp T--TGGGCSSCCEEEECBC---
T ss_pred H--HhccCCCCCEEEeeCcccC
Confidence 2 5566666666666666654
|
| >4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A | Back alignment and structure |
|---|
Probab=99.63 E-value=5.8e-16 Score=163.01 Aligned_cols=86 Identities=26% Similarity=0.404 Sum_probs=73.5
Q ss_pred cCeeeeccCceEEEEEE------CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL------DSGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
.+.||+|+||+||+|++ .+++.||||+++... ....++|.+|++++++++|||||+++|+|...+. .+|||
T Consensus 31 ~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~--~~lV~ 108 (308)
T 4gt4_A 31 MEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQP--LSMIF 108 (308)
T ss_dssp EEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS--CEEEE
T ss_pred eeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCE--EEEEE
Confidence 45799999999999986 256889999996542 3346789999999999999999999999998777 99999
Q ss_pred ecCCCCCHHHHHhcC
Q 003307 810 NYINAQSLAVYLQGK 824 (832)
Q Consensus 810 e~~~~GsL~~~l~~~ 824 (832)
|||++|+|.++|+.+
T Consensus 109 Ey~~~G~L~~~L~~~ 123 (308)
T 4gt4_A 109 SYCSHGDLHEFLVMR 123 (308)
T ss_dssp ECCSSCBHHHHHHTT
T ss_pred EcCCCCcHHHHHHhh
Confidence 999999999999764
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-17 Score=192.21 Aligned_cols=117 Identities=21% Similarity=0.260 Sum_probs=59.9
Q ss_pred ccccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCC
Q 003307 84 PTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKL 163 (832)
Q Consensus 84 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 163 (832)
..+..++.|+.|+|++|.+....+.+..+++|++|+|++|.|+ .+|..|++|++|++|+|++|.|+ .+|..|+++++|
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 295 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL 295 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence 3445555555555555555532224445555555555555555 44555555555555555555555 445555555555
Q ss_pred CEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCC
Q 003307 164 KYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDL 203 (832)
Q Consensus 164 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~ 203 (832)
++|+|++|.|+ .+|..|+.+++|++|+|++|.|++.+|.
T Consensus 296 ~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 296 KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp SEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred CEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence 55555555554 3344455555555555555555544443
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-15 Score=146.34 Aligned_cols=86 Identities=27% Similarity=0.314 Sum_probs=65.0
Q ss_pred CCCCCEEECCCCCCC-ccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEE
Q 003307 112 IQSLEFLDLSHNLFH-GLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHV 190 (832)
Q Consensus 112 l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L 190 (832)
.++|++|+|++|.++ +.+|..+..+++|++|+|++|.+++. ..|..+++|++|+|++|++++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 466777777777776 56676777777888888888887755 667778888888888888877677777777788888
Q ss_pred ECccCcCcc
Q 003307 191 DLSNNQFSG 199 (832)
Q Consensus 191 ~Ls~N~l~~ 199 (832)
+|++|.+++
T Consensus 101 ~Ls~N~l~~ 109 (168)
T 2ell_A 101 NLSGNKLKD 109 (168)
T ss_dssp ECBSSSCCS
T ss_pred eccCCccCc
Confidence 888777763
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4.8e-15 Score=142.21 Aligned_cols=136 Identities=26% Similarity=0.234 Sum_probs=110.2
Q ss_pred CcccEEEcCCCcCC-CCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEe
Q 003307 354 NYVEDIHLSSNFLT-GMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLN 432 (832)
Q Consensus 354 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 432 (832)
.+|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 46889999999988 67788888899999999999999865 7788899999999999999987788888899999999
Q ss_pred ccCCcccccCC-cccccCCCCCcccCcccccEEEccCCcCcccCC---hhhhcCCCCCEEeCcCCcCcccCCC
Q 003307 433 LSGNNFSGPLP-LQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLL---PGISKFHNLVYLNLSNNKFEGSIPD 501 (832)
Q Consensus 433 Ls~N~l~~~~p-~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~g~ip~ 501 (832)
|++|++++..+ ..+... .+|++|++++|.+++..+ ..+..+++|+.|++++|.+. .+|.
T Consensus 102 Ls~N~l~~~~~~~~l~~l---------~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKL---------ECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSC---------SCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred ccCCccCcchhHHHHhcC---------CCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 99999886422 222222 248899999999987665 47888999999999999887 4444
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.59 E-value=6.4e-16 Score=145.08 Aligned_cols=108 Identities=19% Similarity=0.255 Sum_probs=60.5
Q ss_pred CCCCEEEcCCCCCc-ccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEee
Q 003307 90 KMLCNVSVSNNQLM-GNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLD 167 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~-~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 167 (832)
++|+.|++++|.++ +.+| .+..+++|++|+|++|.+++. ..|..+++|++|+|++|.+++.+|..+.++++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45556666666655 3444 455556666666666665544 4455555666666666665554555555555566666
Q ss_pred CcCCCCCCc-cchhhhcCCCCCEEECccCcCcc
Q 003307 168 LRANRFGGD-IMHLLSQLGSVVHVDLSNNQFSG 199 (832)
Q Consensus 168 L~~N~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~ 199 (832)
|++|++++. .+..+..+++|++|++++|.+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 666655543 23455555555555555555553
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=142.28 Aligned_cols=126 Identities=25% Similarity=0.243 Sum_probs=97.6
Q ss_pred EEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCC
Q 003307 94 NVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRF 173 (832)
Q Consensus 94 ~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 173 (832)
.+++++|.++..+..+ .++|++|+|++|.|+ .+|..|.++++|++|+|++|.|++..+..|.++++|++|+|++|+|
T Consensus 14 ~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCSSCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCCcCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 3444555555333333 268999999999998 5678999999999999999999988888999999999999999999
Q ss_pred CCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCe
Q 003307 174 GGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLV 225 (832)
Q Consensus 174 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 225 (832)
++..+..|..+++|++|+|++|.+++..+.. +..+++|+.|+|++|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGA---FNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTT---TTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhh---hhcCccccEEEeCCCCee
Confidence 9988889999999999999999988433322 223455555555555553
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.8e-16 Score=164.40 Aligned_cols=96 Identities=14% Similarity=0.054 Sum_probs=66.7
Q ss_pred EecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCC-EEEccCCcCCCCcccccCCCCCCCEEEccCCc
Q 003307 335 VDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLT-SFKVSNNSLEGDLPAVLGTYPELKVIDLSLNH 413 (832)
Q Consensus 335 L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 413 (832)
++|++|+++......|..+.+|+.|+|.+| ++.+.+.+|.++.+|+ .+++.+ .++...+.+|.++++|+.|+++.|+
T Consensus 231 l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 231 LDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp EECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSC
T ss_pred EECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCc
Confidence 333333333333344444446777888777 6666777788888888 888877 6765666778888888888888888
Q ss_pred ccccCcccccCCCCCCeEe
Q 003307 414 LNGFLLPSFFTSTKLTDLN 432 (832)
Q Consensus 414 l~~~~~~~~~~l~~L~~L~ 432 (832)
++.+.+.+|.++++|+.++
T Consensus 309 i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 309 ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCEECTTTTCTTCCCCEEE
T ss_pred cCccchhhhcCCcchhhhc
Confidence 8877777788888887775
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=139.68 Aligned_cols=106 Identities=23% Similarity=0.227 Sum_probs=84.5
Q ss_pred CCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCC
Q 003307 92 LCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRAN 171 (832)
Q Consensus 92 L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 171 (832)
.+.+++++|+++..+..+ .++|++|+|++|++++..+..|..+++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 466778888877654333 368888888888888777777888888888888888888777777888888888888888
Q ss_pred CCCCccchhhhcCCCCCEEECccCcCcc
Q 003307 172 RFGGDIMHLLSQLGSVVHVDLSNNQFSG 199 (832)
Q Consensus 172 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 199 (832)
++++..+..+..+++|++|+|++|++++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 114 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKS 114 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceE
Confidence 8887777778888888888888888773
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.57 E-value=6.6e-15 Score=138.13 Aligned_cols=128 Identities=26% Similarity=0.213 Sum_probs=104.9
Q ss_pred CcccEEEcCCCcCC-CCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEe
Q 003307 354 NYVEDIHLSSNFLT-GMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLN 432 (832)
Q Consensus 354 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 432 (832)
.+|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 36899999999998 77888888999999999999999866 7788899999999999999987888888899999999
Q ss_pred ccCCccccc-CCcccccCCCCCcccCcccccEEEccCCcCcccCC---hhhhcCCCCCEEeCcC
Q 003307 433 LSGNNFSGP-LPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLL---PGISKFHNLVYLNLSN 492 (832)
Q Consensus 433 Ls~N~l~~~-~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~ 492 (832)
+++|++++. .+..+.... +|++|++++|++++..+ ..+..+++|+.||+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~---------~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLE---------NLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCT---------TCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCC---------CCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999998863 223333332 38889999998887766 5788888999888864
|
| >3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.1e-15 Score=154.49 Aligned_cols=89 Identities=25% Similarity=0.343 Sum_probs=75.3
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||+||+|++. ..||||+++.. .....++|.+|++++++++|||||+++|+|.. +. .+||||||++
T Consensus 41 ~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~--~~iVmEy~~g 115 (307)
T 3omv_A 41 STRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DN--LAIVTQWCEG 115 (307)
T ss_dssp EEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SS--CEEEEECCSS
T ss_pred eeEEeeCCCcEEEEEEEC--CcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-Ce--EEEEEEcCCC
Confidence 567999999999999975 36999998643 33456789999999999999999999999864 44 7999999999
Q ss_pred CCHHHHHhcC-CCcccc
Q 003307 815 QSLAVYLQGK-GLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~-~~l~w~ 830 (832)
|+|+++|+.. ..++|.
T Consensus 116 GsL~~~l~~~~~~l~~~ 132 (307)
T 3omv_A 116 SSLYKHLHVQETKFQMF 132 (307)
T ss_dssp CBHHHHHHTSCCCCCHH
T ss_pred CCHHHHHhhcCCCCCHH
Confidence 9999999864 468774
|
| >3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.7e-15 Score=152.17 Aligned_cols=94 Identities=19% Similarity=0.298 Sum_probs=78.7
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECC--CCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGP--KEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~--~~~~~~lv~e~ 811 (832)
+..||+|+||+||+|+.. +|..||||++... .....+.|.+|++++++++|||||+++++|.+. .....+|||||
T Consensus 31 ~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvmEy 110 (290)
T 3fpq_A 31 DIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTEL 110 (290)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEEEC
T ss_pred eeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEEeC
Confidence 456999999999999974 7999999998543 333457799999999999999999999998652 22237999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
|++|+|.++|++.+.++|.
T Consensus 111 ~~gg~L~~~l~~~~~l~~~ 129 (290)
T 3fpq_A 111 MTSGTLKTYLKRFKVMKIK 129 (290)
T ss_dssp CCSCBHHHHHHHHSSCCHH
T ss_pred CCCCCHHHHHHhcCCCCHH
Confidence 9999999999988777764
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-14 Score=155.94 Aligned_cols=269 Identities=11% Similarity=0.110 Sum_probs=137.4
Q ss_pred CCCCCEEEcCCCCCcccCCCCCC-CCCCCEEECCCCCCC--ccCcccccCCCCCCEEEcccccccccCCCCCCC------
Q 003307 89 LKMLCNVSVSNNQLMGNITDIGS-IQSLEFLDLSHNLFH--GLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGG------ 159 (832)
Q Consensus 89 l~~L~~L~Ls~n~l~~~~~~~~~-l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------ 159 (832)
+.+++.|+++++--......+.. +++|+.|||++|+|. ...+. .++.++.+.+..|. +.+.+|.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~---I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANF---VPAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTE---ECTTTTEEEETTEE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccc---cCHHHhcccccccc
Confidence 55677888776421111112333 677888888888777 22222 22234555555553 33456666
Q ss_pred --CCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCC
Q 003307 160 --LGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYF 237 (832)
Q Consensus 160 --l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l 237 (832)
+++|+.|+|.+ .++.+...+|.++++|+.|++++|.++...+.. |..+
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~a-----------------------------F~~~ 147 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEA-----------------------------LADS 147 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTS-----------------------------SCTT
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhh-----------------------------hcCC
Confidence 78888888877 777666677777777777777777766222221 2223
Q ss_pred CCcCEEEccCCcc----cccCC-Ccccccccc-EEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCC
Q 003307 238 DNLEVFDASNNHL----VGAIP-SFNFVFSLR-ILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATL 311 (832)
Q Consensus 238 ~~L~~L~Ls~N~l----~~~~~-~~~~l~~L~-~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L 311 (832)
.++..+.+..+.. ..... .|..+..|+ .+.+... +.++..++... ....++
T Consensus 148 ~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~--------------------~~~~~~ 204 (329)
T 3sb4_A 148 VTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAG--------------------LQPRDI 204 (329)
T ss_dssp TCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHTT--------------------CCGGGC
T ss_pred CceEEecCcchhhhhccccccccccccccccceeEEecCC---CcHHHHHhhcc--------------------cCcccc
Confidence 3333333322111 00111 233344444 3333221 12333322110 001122
Q ss_pred CEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCC
Q 003307 312 KKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLE 391 (832)
Q Consensus 312 ~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 391 (832)
+.+.+.++ -.......+...+.+|+.|+|++|.++.+.+..|.++.+|+.|+|.+| ++
T Consensus 205 ~~l~~~~~---------------------l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~ 262 (329)
T 3sb4_A 205 NFLTIEGK---------------------LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK 262 (329)
T ss_dssp SEEEEEEC---------------------CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC
T ss_pred ceEEEeee---------------------ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc
Confidence 22222221 000011111122345777777777777666666777777777777766 55
Q ss_pred CCcccccCCCCCCC-EEEccCCcccccCcccccCCCCCCeEeccCCccc
Q 003307 392 GDLPAVLGTYPELK-VIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFS 439 (832)
Q Consensus 392 ~~~p~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 439 (832)
...+.+|.++++|+ .+++++ .++.+.+.+|.++++|+.|++++|+++
T Consensus 263 ~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 263 TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence 55556666666776 676666 555555566666666666555555544
|
| >4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-14 Score=153.75 Aligned_cols=87 Identities=22% Similarity=0.352 Sum_probs=70.6
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|+||+||+|+. .+|+.||||+++.. .....+.|.+|+++|++++|||||++++++.+.+. .|||||||+
T Consensus 29 ~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~--~yiVmEy~~ 106 (350)
T 4b9d_A 29 LQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGS--LYIVMDYCE 106 (350)
T ss_dssp EEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTE--EEEEEECCT
T ss_pred eEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCE--EEEEEeCCC
Confidence 56799999999999997 48999999999643 33346779999999999999999999999998777 999999999
Q ss_pred CCCHHHHHhcCC
Q 003307 814 AQSLAVYLQGKG 825 (832)
Q Consensus 814 ~GsL~~~l~~~~ 825 (832)
+|+|+++|+.++
T Consensus 107 gg~L~~~i~~~~ 118 (350)
T 4b9d_A 107 GGDLFKRINAQK 118 (350)
T ss_dssp TCBHHHHHHHTT
T ss_pred CCcHHHHHHHcC
Confidence 999999997654
|
| >3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-14 Score=153.14 Aligned_cols=91 Identities=20% Similarity=0.199 Sum_probs=72.0
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC--ceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE--HEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~--~~~~lv~e~~~~ 814 (832)
.+.||+|+||+||+|++ +|+.||||+++.... ....+.+|+..+.+++|||||+++|+|...+. ...+||||||++
T Consensus 8 ~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey~~~ 85 (303)
T 3hmm_A 8 QESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEH 85 (303)
T ss_dssp EEEEEECSSSEEEEEEE-TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTT
T ss_pred EEEEeeCCCeEEEEEEE-CCEEEEEEEECccch-hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEecCCCC
Confidence 57899999999999998 589999999964322 12234456666778999999999999986542 137999999999
Q ss_pred CCHHHHHhcCCCcccc
Q 003307 815 QSLAVYLQGKGLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~~~l~w~ 830 (832)
|+|.++|+.+ .++|+
T Consensus 86 gsL~~~l~~~-~l~~~ 100 (303)
T 3hmm_A 86 GSLFDYLNRY-TVTVE 100 (303)
T ss_dssp CBHHHHHHHC-CBCHH
T ss_pred CcHHHHHHhC-CCCHH
Confidence 9999999865 46664
|
| >4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-14 Score=152.34 Aligned_cols=92 Identities=17% Similarity=0.180 Sum_probs=80.2
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||+||+|+. .+|+.||||+++... ....+.+.+|+++|++++|||||++++++.+.+. .|+|||||
T Consensus 37 ~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~--~yivmEy~ 114 (311)
T 4aw0_A 37 GKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEK--LYFGLSYA 114 (311)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE--EEEEECCC
T ss_pred EEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCE--EEEEEecC
Confidence 67899999999999997 589999999995431 2235679999999999999999999999998777 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|+++|+..+.+++.
T Consensus 115 ~gG~L~~~i~~~~~l~e~ 132 (311)
T 4aw0_A 115 KNGELLKYIRKIGSFDET 132 (311)
T ss_dssp TTEEHHHHHHHHSSCCHH
T ss_pred CCCCHHHHHHHcCCCCHH
Confidence 999999999987777653
|
| >4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=8.5e-15 Score=155.43 Aligned_cols=91 Identities=21% Similarity=0.262 Sum_probs=77.9
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|+||+||+|+. .+|+.||||+++.......+.+.+|+++|++++|||||++++++.+.+. .|||||||++|
T Consensus 79 ~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~--~~ivmEy~~gg 156 (346)
T 4fih_A 79 FIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDE--LWVVMEFLEGG 156 (346)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTE--EEEEECCCTTE
T ss_pred eEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE--EEEEEeCCCCC
Confidence 35699999999999997 4899999999964433345668999999999999999999999998877 99999999999
Q ss_pred CHHHHHhcCCCcccc
Q 003307 816 SLAVYLQGKGLVLWF 830 (832)
Q Consensus 816 sL~~~l~~~~~l~w~ 830 (832)
+|+++++.. .++|.
T Consensus 157 ~L~~~l~~~-~l~e~ 170 (346)
T 4fih_A 157 ALTDIVTHT-RMNEE 170 (346)
T ss_dssp EHHHHHHHS-CCCHH
T ss_pred cHHHHHHcC-CCCHH
Confidence 999999764 45553
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.5e-15 Score=142.93 Aligned_cols=112 Identities=17% Similarity=0.102 Sum_probs=78.5
Q ss_pred ccccCCCCCCEEEcCCCCCcccCCCCCCCC-CCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCC
Q 003307 84 PTIIGLKMLCNVSVSNNQLMGNITDIGSIQ-SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGK 162 (832)
Q Consensus 84 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 162 (832)
+.+.++.+|+.|+|++|+++.. +.+..+. +|++|+|++|.|++. ..|..+++|++|+|++|.|++..+..|.++++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred HhcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3456677778888888877743 5455544 788888888877765 56777777888888888877654455577777
Q ss_pred CCEeeCcCCCCCCccc-hhhhcCCCCCEEECccCcCc
Q 003307 163 LKYLDLRANRFGGDIM-HLLSQLGSVVHVDLSNNQFS 198 (832)
Q Consensus 163 L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~ 198 (832)
|++|+|++|+++...+ ..+..+++|++|++++|.++
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 8888888877754322 26777777777777777776
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=132.86 Aligned_cols=86 Identities=24% Similarity=0.263 Sum_probs=43.8
Q ss_pred CCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEEC
Q 003307 113 QSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDL 192 (832)
Q Consensus 113 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 192 (832)
++|++|+|++|+|+++.|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..|..+++|++|+|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 44455555555555444545555555555555555555444444455555555555555555444444555555555555
Q ss_pred ccCcCc
Q 003307 193 SNNQFS 198 (832)
Q Consensus 193 s~N~l~ 198 (832)
++|.++
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 555444
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-14 Score=135.89 Aligned_cols=115 Identities=18% Similarity=0.184 Sum_probs=96.3
Q ss_pred CCCCCCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCcc
Q 003307 50 SDGCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGL 128 (832)
Q Consensus 50 ~~~c~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~ 128 (832)
++.|.|.|..+.| +++++.. + +..+ .++|+.|+|++|+|++..+ .|..+++|++|+|++|+|+++
T Consensus 4 P~~C~C~~~~l~~----------s~n~l~~-i-p~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l 69 (170)
T 3g39_A 4 PSQCSCSGTTVDC----------SGKSLAS-V-PTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 69 (170)
T ss_dssp C-CCEEETTEEEC----------TTSCCSS-C-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred cCcCCcCCCEEEe----------CCCCcCc-c-CccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc
Confidence 4567777765555 4555543 3 2233 3789999999999999988 899999999999999999999
Q ss_pred CcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccc
Q 003307 129 IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIM 178 (832)
Q Consensus 129 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 178 (832)
.+..|.++++|++|+|++|+|++..+..|.++++|++|+|++|.++...+
T Consensus 70 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 70 PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 88889999999999999999998888889999999999999999986654
|
| >4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.8e-14 Score=155.30 Aligned_cols=90 Identities=21% Similarity=0.279 Sum_probs=77.8
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+. .+|+.||||+++.......+.+.+|+++|++++|||||+++++|.+.+. .|||||||++|
T Consensus 156 ~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~--~~iVmEy~~gG 233 (423)
T 4fie_A 156 FIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDE--LWVVMEFLEGG 233 (423)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTE--EEEEEECCTTE
T ss_pred eeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCE--EEEEEeCCCCC
Confidence 45799999999999997 4899999999965444445668999999999999999999999998877 99999999999
Q ss_pred CHHHHHhcCCCccc
Q 003307 816 SLAVYLQGKGLVLW 829 (832)
Q Consensus 816 sL~~~l~~~~~l~w 829 (832)
+|.++++.. .+++
T Consensus 234 ~L~~~i~~~-~l~e 246 (423)
T 4fie_A 234 ALTDIVTHT-RMNE 246 (423)
T ss_dssp EHHHHHHHS-CCCH
T ss_pred cHHHHHhcc-CCCH
Confidence 999998754 3554
|
| >4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-14 Score=151.18 Aligned_cols=87 Identities=18% Similarity=0.206 Sum_probs=76.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+. .+|+.||||+++.... +.+|++++++++|||||++++++.+.+. .|||||||++|
T Consensus 63 ~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~--~~ivmEy~~gg 135 (336)
T 4g3f_A 63 QPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPW--VNIFMELLEGG 135 (336)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTE--EEEEECCCTTC
T ss_pred CcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEECCE--EEEEEeccCCC
Confidence 45799999999999997 4899999999964322 2479999999999999999999998777 99999999999
Q ss_pred CHHHHHhcCCCcccc
Q 003307 816 SLAVYLQGKGLVLWF 830 (832)
Q Consensus 816 sL~~~l~~~~~l~w~ 830 (832)
+|+++|+..+.++|.
T Consensus 136 ~L~~~l~~~~~l~e~ 150 (336)
T 4g3f_A 136 SLGQLIKQMGCLPED 150 (336)
T ss_dssp BHHHHHHHHSSCCHH
T ss_pred cHHHHHHHcCCCCHH
Confidence 999999988888774
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.48 E-value=3.4e-12 Score=139.77 Aligned_cols=267 Identities=9% Similarity=0.033 Sum_probs=132.3
Q ss_pred CCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeC
Q 003307 90 KMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDL 168 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 168 (832)
..++.+.+.++ ++.... .|.++ +|+.++|..+ ++.+...+|.++ +|+.+.+.. .++.+.+.+|.++++|+.++|
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 44555555432 333333 44443 4555555444 444444455552 455555553 444444455555555555555
Q ss_pred cCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCC
Q 003307 169 RANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNN 248 (832)
Q Consensus 169 ~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 248 (832)
++|+++.+....|. ..+|+.+.| ..+ ++.. ....|.++++|+.+++..|
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~l---------------------------p~~-l~~I--~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLL---------------------------PVT-LKEI--GSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEEC---------------------------CTT-CCEE--CTTTTTTCTTCCCEECCTT
T ss_pred CCCcceEechhhEe-ecccCEEEe---------------------------CCc-hhee--hhhHhhCCCCCCEEecCCC
Confidence 55555544444444 344444444 422 2211 1122556666666666654
Q ss_pred cccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCC
Q 003307 249 HLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPA 327 (832)
Q Consensus 249 ~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~ 327 (832)
++.... .|.. .+|+.+.+. +.++ .++...| ..+.+|+.+++..|.+..
T Consensus 237 -l~~I~~~aF~~-~~L~~i~lp-~~i~-~I~~~aF-~~c~~L~~l~l~~~~~~~-------------------------- 285 (401)
T 4fdw_A 237 -VSTIGQEAFRE-SGITTVKLP-NGVT-NIASRAF-YYCPELAEVTTYGSTFND-------------------------- 285 (401)
T ss_dssp -CCEECTTTTTT-CCCSEEEEE-TTCC-EECTTTT-TTCTTCCEEEEESSCCCC--------------------------
T ss_pred -ccCcccccccc-CCccEEEeC-CCcc-EEChhHh-hCCCCCCEEEeCCccccC--------------------------
Confidence 332222 4444 566666663 3343 2332222 234444444443333220
Q ss_pred CCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEE
Q 003307 328 RVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVI 407 (832)
Q Consensus 328 ~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 407 (832)
+.+.......|..+.+|+.++|. +.++.+....|.++.+|+.++|.+| ++...+.+|.++ +|+.+
T Consensus 286 ------------~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l 350 (401)
T 4fdw_A 286 ------------DPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEV 350 (401)
T ss_dssp ------------CTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEE
T ss_pred ------------CcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEE
Confidence 00000111222223356666666 3355555666777777777777544 554556667777 77777
Q ss_pred EccCCcccccCcccccCCC-CCCeEeccCCcc
Q 003307 408 DLSLNHLNGFLLPSFFTST-KLTDLNLSGNNF 438 (832)
Q Consensus 408 ~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l 438 (832)
++++|.+.......|.+++ .++.|++..+.+
T Consensus 351 ~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 351 KVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp EECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 7777776666666666663 566666666544
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.48 E-value=4.4e-14 Score=136.57 Aligned_cols=136 Identities=19% Similarity=0.144 Sum_probs=100.2
Q ss_pred CCCCCCCCCCEEECCCCCCCccCcccccCCC-CCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCC
Q 003307 107 TDIGSIQSLEFLDLSHNLFHGLIPSGIVSLK-NLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLG 185 (832)
Q Consensus 107 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~ 185 (832)
+.+..+.+|++|+|++|.++.+ |. +..+. +|++|+|++|.|++. ..|.++++|++|+|++|+|++..+..+..++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 3567789999999999999955 54 55554 999999999999975 6899999999999999999977667778999
Q ss_pred CCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCCC----ccccc
Q 003307 186 SVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPS----FNFVF 261 (832)
Q Consensus 186 ~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~l~ 261 (832)
+|++|+|++|.++. +|. +.. +..+++|+.|++++|.++...+. +..++
T Consensus 89 ~L~~L~L~~N~i~~-~~~-~~~--------------------------l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~ 140 (176)
T 1a9n_A 89 DLTELILTNNSLVE-LGD-LDP--------------------------LASLKSLTYLCILRNPVTNKKHYRLYVIYKVP 140 (176)
T ss_dssp TCCEEECCSCCCCC-GGG-GGG--------------------------GGGCTTCCEEECCSSGGGGSTTHHHHHHHHCT
T ss_pred CCCEEECCCCcCCc-chh-hHh--------------------------hhcCCCCCEEEecCCCCCCcHhHHHHHHHHCC
Confidence 99999999998862 221 111 44455566666666666533322 55666
Q ss_pred cccEEEccccCCC
Q 003307 262 SLRILRLGSNQLS 274 (832)
Q Consensus 262 ~L~~L~L~~N~l~ 274 (832)
+|+.|+++.|.+.
T Consensus 141 ~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 141 QVRVLDFQKVKLK 153 (176)
T ss_dssp TCSEETTEECCHH
T ss_pred ccceeCCCcCCHH
Confidence 7777777776654
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-13 Score=131.06 Aligned_cols=86 Identities=28% Similarity=0.278 Sum_probs=52.7
Q ss_pred CCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEEC
Q 003307 113 QSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDL 192 (832)
Q Consensus 113 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 192 (832)
++|++|+|++|+|+++.|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..|..+++|++|+|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 55666666666666665666666666666666666666554445566666666666666666555555666666666666
Q ss_pred ccCcCc
Q 003307 193 SNNQFS 198 (832)
Q Consensus 193 s~N~l~ 198 (832)
++|.+.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 666555
|
| >4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-13 Score=143.81 Aligned_cols=92 Identities=20% Similarity=0.332 Sum_probs=74.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC----------ce
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE----------HE 804 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~----------~~ 804 (832)
.+.||+|+||+||+|+. .+|+.||||+++.. .....+.|.+|+++|++++|||||++++++...+. ..
T Consensus 10 ~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~~~~~~ 89 (299)
T 4g31_A 10 IQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVY 89 (299)
T ss_dssp EEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC----------CEE
T ss_pred eeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccccCCCcE
Confidence 56899999999999997 48999999998643 33345679999999999999999999999865432 12
Q ss_pred EEEEEecCCCCCHHHHHhcCCCcc
Q 003307 805 KLVISNYINAQSLAVYLQGKGLVL 828 (832)
Q Consensus 805 ~~lv~e~~~~GsL~~~l~~~~~l~ 828 (832)
.++|||||++|+|.++++++..+.
T Consensus 90 l~ivmE~~~gg~L~~~l~~~~~~~ 113 (299)
T 4g31_A 90 LYIQMQLCRKENLKDWMNGRCTIE 113 (299)
T ss_dssp EEEEEECCCSCCHHHHHHTCCSGG
T ss_pred EEEEEecCCCCcHHHHHHhcCCCC
Confidence 689999999999999999876544
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.9e-12 Score=137.91 Aligned_cols=310 Identities=12% Similarity=0.033 Sum_probs=159.9
Q ss_pred ccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCC
Q 003307 84 PTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGK 162 (832)
Q Consensus 84 ~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 162 (832)
.+|.++++|+.+.|..+ ++.... .|.+|++|+.++|..+ ++.+...+|.++.+|+.+.+..+ +..+...+|.++..
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 45666677777777543 444444 6677777777777544 55455566666777766666543 33345556666554
Q ss_pred CCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCE
Q 003307 163 LKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEV 242 (832)
Q Consensus 163 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 242 (832)
++....... ......+|.++++|+.+.+..+..+ + .-+.+..+.+|+.+.+..+ ++. + ....|.++..|+.
T Consensus 142 ~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~~--I--~~~~F~~c~~L~~i~l~~~-~~~-I-~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 142 KEITIPEGV--TVIGDEAFATCESLEYVSLPDSMET--L--HNGLFSGCGKLKSIKLPRN-LKI-I-RDYCFAECILLEN 212 (394)
T ss_dssp SEEECCTTC--CEECTTTTTTCTTCCEEECCTTCCE--E--CTTTTTTCTTCCBCCCCTT-CCE-E-CTTTTTTCTTCCB
T ss_pred cccccCccc--cccchhhhcccCCCcEEecCCccce--e--ccccccCCCCceEEEcCCC-ceE-e-Cchhhccccccce
Confidence 443333222 2233445666666666666544321 1 1122334455555555544 211 1 1122455555555
Q ss_pred EEccCCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCC-ccCccCCCCCCEEEecCCee
Q 003307 243 FDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG-PVGSITSATLKKVNLSSNKL 321 (832)
Q Consensus 243 L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~-~~~~~~~~~L~~L~L~~N~l 321 (832)
+.+..+... .........+|+.+.+..+. + .+....+ ..+..++.+.+..+...- .........++.+.+..+.+
T Consensus 213 i~~~~~~~~-i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f-~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i 288 (394)
T 4fs7_A 213 MEFPNSLYY-LGDFALSKTGVKNIIIPDSF-T-ELGKSVF-YGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIV 288 (394)
T ss_dssp CCCCTTCCE-ECTTTTTTCCCCEEEECTTC-C-EECSSTT-TTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEE
T ss_pred eecCCCceE-eehhhcccCCCceEEECCCc-e-ecccccc-cccccceeEEcCCCcceeeccccccccccceeccCceee
Confidence 555443322 11122223345554443321 1 1111111 233444444444332210 00011122333333333222
Q ss_pred cccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCC
Q 003307 322 SGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTY 401 (832)
Q Consensus 322 ~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 401 (832)
. ...+..+.+|+.+.+.++ ++.+...+|.++.+|+.++|.++ ++.....+|.++
T Consensus 289 ~------------------------~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c 342 (394)
T 4fs7_A 289 P------------------------EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGC 342 (394)
T ss_dssp C------------------------TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTC
T ss_pred c------------------------cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCC
Confidence 1 223344446777777654 55555667788888888888644 665556778888
Q ss_pred CCCCEEEccCCcccccCcccccCCCCCCeEeccCC
Q 003307 402 PELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGN 436 (832)
Q Consensus 402 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 436 (832)
.+|+.+++..| ++.+...+|.++.+|+.+++..+
T Consensus 343 ~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 343 TSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 88888888766 66666777888888888888655
|
| >3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=142.49 Aligned_cols=91 Identities=18% Similarity=0.307 Sum_probs=75.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||+||+|+. .+|+.||||+++... ....+.|.+|++++++++|||||++++++.+.+. .++|||||
T Consensus 18 ~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~--~~ivmEy~ 95 (275)
T 3hyh_A 18 VKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDE--IIMVIEYA 95 (275)
T ss_dssp EEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEEECC
T ss_pred EEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCE--EEEEEeCC
Confidence 56899999999999997 489999999996432 2235679999999999999999999999998777 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
+|+|.+++..++.+++.
T Consensus 96 -~g~L~~~l~~~~~l~e~ 112 (275)
T 3hyh_A 96 -GNELFDYIVQRDKMSEQ 112 (275)
T ss_dssp -CEEHHHHHHHSCSCCHH
T ss_pred -CCCHHHHHHHcCCCCHH
Confidence 68999999988877764
|
| >4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-13 Score=147.44 Aligned_cols=87 Identities=30% Similarity=0.423 Sum_probs=72.2
Q ss_pred cCeeeeccCceEEEEEEC------CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCC-CcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKH-PNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H-~niv~l~g~~~~~~~~~~~lv 808 (832)
.+.||+|+||+||+|++. .++.||||+++... ....++|.+|+++|.+++| ||||+++|+|...+. ..+||
T Consensus 69 ~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~-~~~iV 147 (353)
T 4ase_A 69 GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG-PLMVI 147 (353)
T ss_dssp EEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTS-CCEEE
T ss_pred eeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecCC-EEEEE
Confidence 678999999999999862 24689999996543 3345779999999999965 899999999976432 27999
Q ss_pred EecCCCCCHHHHHhcC
Q 003307 809 SNYINAQSLAVYLQGK 824 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~ 824 (832)
||||++|+|.++|+..
T Consensus 148 ~Ey~~~G~L~~~L~~~ 163 (353)
T 4ase_A 148 VEFCKFGNLSTYLRSK 163 (353)
T ss_dssp EECCTTEEHHHHHHHT
T ss_pred EEcCCCCCHHHHHHhc
Confidence 9999999999999864
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.43 E-value=6.1e-12 Score=137.81 Aligned_cols=248 Identities=11% Similarity=0.088 Sum_probs=159.3
Q ss_pred cccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCC
Q 003307 83 FPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLG 161 (832)
Q Consensus 83 ~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 161 (832)
...|.+. +|+.++|..+ ++.... .|.++ +|+.++|.. .++.+.+.+|.++++|+.++|++|+++.+...+|. ..
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~ 203 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YA 203 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TC
T ss_pred HhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ec
Confidence 3456664 7999999877 666555 78885 799999986 78888889999999999999999999987777787 68
Q ss_pred CCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcC
Q 003307 162 KLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLE 241 (832)
Q Consensus 162 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~ 241 (832)
+|+.+.|..+ ++.+...+|.++++|+.+++..| ++. ++ -..|.. .+|+.+.+.+ .+
T Consensus 204 ~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~-I~--~~aF~~-~~L~~i~lp~-~i----------------- 259 (401)
T 4fdw_A 204 GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VST-IG--QEAFRE-SGITTVKLPN-GV----------------- 259 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCE-EC--TTTTTT-CCCSEEEEET-TC-----------------
T ss_pred ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccC-cc--cccccc-CCccEEEeCC-Cc-----------------
Confidence 9999999854 77778889999999999999865 331 11 112222 3455555522 22
Q ss_pred EEEccCCcccccCC-CccccccccEEEccccCCCC----CCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEe
Q 003307 242 VFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSG----SLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNL 316 (832)
Q Consensus 242 ~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~----~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L 316 (832)
+.... .|..+++|+.+++.+|.+.. .++...| ..+.+|+.+++.. .++
T Consensus 260 ---------~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF-~~c~~L~~l~l~~-~i~---------------- 312 (401)
T 4fdw_A 260 ---------TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL-EGCPKLARFEIPE-SIR---------------- 312 (401)
T ss_dssp ---------CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT-TTCTTCCEECCCT-TCC----------------
T ss_pred ---------cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh-hCCccCCeEEeCC-ceE----------------
Confidence 22222 44444455555554444320 1222222 2233333333321 111
Q ss_pred cCCeecccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCccc
Q 003307 317 SSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPA 396 (832)
Q Consensus 317 ~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 396 (832)
......|..+.+|+.+.|..| ++.+...+|.++ +|+.+++++|.+....+.
T Consensus 313 ---------------------------~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 313 ---------------------------ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp ---------------------------EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred ---------------------------EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence 111122222235666776443 555666778888 888888888888766667
Q ss_pred ccCCCC-CCCEEEccCCccc
Q 003307 397 VLGTYP-ELKVIDLSLNHLN 415 (832)
Q Consensus 397 ~~~~l~-~L~~L~Ls~N~l~ 415 (832)
.|.+++ +++.|++..+.+.
T Consensus 364 ~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 364 VWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SCCCSCTTCCEEEECGGGHH
T ss_pred cccCCCCCccEEEeCHHHHH
Confidence 777774 6788888877654
|
| >3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.7e-14 Score=148.22 Aligned_cols=92 Identities=17% Similarity=0.268 Sum_probs=72.9
Q ss_pred cCeeeeccCceEEEEEE----CCCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL----DSGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~----~~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
...||+|+||+||+|+. .+++.||||+++... ......+.+|+++|++++|||||++++++.+.+. .|+|||
T Consensus 29 ~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~--~~ivmE 106 (304)
T 3ubd_A 29 LKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGK--LYLILD 106 (304)
T ss_dssp EEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTE--EEEEEC
T ss_pred EEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCE--EEEEEE
Confidence 57899999999999985 257899999985432 1223468899999999999999999999998777 999999
Q ss_pred cCCCCCHHHHHhcCCCcccc
Q 003307 811 YINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~~l~w~ 830 (832)
||++|+|+++|+..+.+++.
T Consensus 107 y~~gg~L~~~l~~~~~l~e~ 126 (304)
T 3ubd_A 107 FLRGGDLFTRLSKEVMFTEE 126 (304)
T ss_dssp CCTTCEEHHHHHHHCCCCHH
T ss_pred cCCCCCHHHHHHhcCCCCHH
Confidence 99999999999987777663
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.7e-13 Score=128.78 Aligned_cols=107 Identities=17% Similarity=0.175 Sum_probs=92.7
Q ss_pred EEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEccc
Q 003307 68 TSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISS 146 (832)
Q Consensus 68 ~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 146 (832)
+.++++++++. .+| ..+. ++|+.|+|++|+|++.+| .|..+++|++|+|++|+|+++.+..|.++++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP-~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVP-AGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCC-SCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccC-CCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 45677777774 442 3343 899999999999999988 899999999999999999998887889999999999999
Q ss_pred ccccccCCCCCCCCCCCCEeeCcCCCCCCccc
Q 003307 147 NSFEGTFPSGFGGLGKLKYLDLRANRFGGDIM 178 (832)
Q Consensus 147 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 178 (832)
|+|++..+..|.++++|++|+|++|.+....+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99998777779999999999999999986543
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.39 E-value=8.2e-16 Score=151.91 Aligned_cols=108 Identities=19% Similarity=0.218 Sum_probs=65.1
Q ss_pred ccCCCCCCEEEcCCCCCcccCC-------CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCC
Q 003307 86 IIGLKMLCNVSVSNNQLMGNIT-------DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFG 158 (832)
Q Consensus 86 ~~~l~~L~~L~Ls~n~l~~~~~-------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 158 (832)
+.....++.++++.+.+.+..| .+..+++|++|+|++|.|++ +| .+..+++|++|+|++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 3445566666666666666554 24556666666666666665 34 5666666666666666666 3455555
Q ss_pred CCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCc
Q 003307 159 GLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFS 198 (832)
Q Consensus 159 ~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 198 (832)
.+++|++|+|++|++++. | .+..+++|++|++++|+++
T Consensus 91 ~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~ 128 (198)
T 1ds9_A 91 VADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKIT 128 (198)
T ss_dssp HHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECC
T ss_pred cCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCC
Confidence 556666666666666542 2 4555666666666666655
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.6e-11 Score=132.16 Aligned_cols=327 Identities=12% Similarity=0.044 Sum_probs=202.6
Q ss_pred CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCC
Q 003307 108 DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSV 187 (832)
Q Consensus 108 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 187 (832)
+|.++.+|+.+.|.. .++.+...+|.++++|+.++|..+ ++.+...+|.++.+|+.+.+..+ +..+...+|.++..+
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 788899999999975 477777888999999999999765 66677788999999998887654 444555667766544
Q ss_pred CEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEE
Q 003307 188 VHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRIL 266 (832)
Q Consensus 188 ~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L 266 (832)
..........- .-..|..+++|+.+.+.++..+ + ....|.++.+|+.+++..+ ++.... .|..+..|+.+
T Consensus 143 ~~~~~~~~~~i-----~~~aF~~c~~L~~i~l~~~~~~--I-~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 143 EITIPEGVTVI-----GDEAFATCESLEYVSLPDSMET--L-HNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp EEECCTTCCEE-----CTTTTTTCTTCCEEECCTTCCE--E-CTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred ccccCcccccc-----chhhhcccCCCcEEecCCccce--e-ccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 43333222211 1233555677777777655321 2 2233667777777777665 332223 56666667766
Q ss_pred EccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcc
Q 003307 267 RLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDL 346 (832)
Q Consensus 267 ~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~ 346 (832)
.+..+... +.... .....|+.+.+..+. + .+..........++.+.+..+.. ...
T Consensus 214 ~~~~~~~~--i~~~~--~~~~~l~~i~ip~~~-~-------------------~i~~~~f~~~~~l~~~~~~~~~~-~i~ 268 (394)
T 4fs7_A 214 EFPNSLYY--LGDFA--LSKTGVKNIIIPDSF-T-------------------ELGKSVFYGCTDLESISIQNNKL-RIG 268 (394)
T ss_dssp CCCTTCCE--ECTTT--TTTCCCCEEEECTTC-C-------------------EECSSTTTTCSSCCEEEECCTTC-EEC
T ss_pred ecCCCceE--eehhh--cccCCCceEEECCCc-e-------------------ecccccccccccceeEEcCCCcc-eee
Confidence 66554332 12222 122345555443221 1 11111112222334444433322 122
Q ss_pred hhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCC
Q 003307 347 SRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTST 426 (832)
Q Consensus 347 ~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 426 (832)
...+.....++.+.+..+.+ ....|..+.+|+.+.+.++ ++.....+|.++.+|+.++|..+ ++.+...+|.++.
T Consensus 269 ~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~ 343 (394)
T 4fs7_A 269 GSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCT 343 (394)
T ss_dssp SCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT
T ss_pred ccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCC
Confidence 23344444677777776654 3456888999999999865 66566788999999999999855 7777788999999
Q ss_pred CCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEE
Q 003307 427 KLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYL 488 (832)
Q Consensus 427 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 488 (832)
+|+.+++..| ++..-...+..+ .+|+.+++..+ ++ .+...|.++++|+.+
T Consensus 344 ~L~~i~lp~~-l~~I~~~aF~~C---------~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 344 SLSNINFPLS-LRKIGANAFQGC---------INLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCCEECCCTT-CCEECTTTBTTC---------TTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCEEEECcc-ccEehHHHhhCC---------CCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 9999999877 543222233333 34999999765 33 234567777777654
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.37 E-value=6.9e-13 Score=143.39 Aligned_cols=112 Identities=24% Similarity=0.301 Sum_probs=89.2
Q ss_pred CCC-CCCCCccccCCCcEEEEEeCCC-CCccccCcccccCCCCCCEEEcCC-CCCcccCC-CCCCCCCCCEEECCCCCCC
Q 003307 51 DGC-PRNWFGITCTNGYVTSIMLNDM-GLVGNFSFPTIIGLKMLCNVSVSN-NQLMGNIT-DIGSIQSLEFLDLSHNLFH 126 (832)
Q Consensus 51 ~~c-~~~w~gv~C~~~~v~~l~l~~~-~l~g~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~-~~~~l~~L~~L~Ls~N~l~ 126 (832)
+.| .|.|..|.|+ ++ +|.+ + |. +..+++|+.|+|++ |.|++.++ .|+.+++|++|+|++|+|+
T Consensus 3 ~~c~~C~~~~v~~~----------~~n~l~~-i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 69 (347)
T 2ifg_A 3 DACCPHGSSGLRCT----------RDGALDS-L-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69 (347)
T ss_dssp SSSCCSSSSCEECC----------SSCCCTT-T-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC
T ss_pred CcCccccCCEEEcC----------CCCCCCc-c-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc
Confidence 456 7788777775 33 4443 4 34 88888899999986 88888887 7888999999999999998
Q ss_pred ccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCc
Q 003307 127 GLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGD 176 (832)
Q Consensus 127 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 176 (832)
++.|..|.+|++|++|+|++|+|++..+..|..++ |+.|+|.+|.+...
T Consensus 70 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 70 FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp EECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred eeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 88888888899999999999999877666777666 88888888888754
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.36 E-value=8e-15 Score=144.77 Aligned_cols=133 Identities=18% Similarity=0.197 Sum_probs=97.4
Q ss_pred cccEEEcCCCcCCCCCcc------cccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCC
Q 003307 355 YVEDIHLSSNFLTGMVPN------QTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKL 428 (832)
Q Consensus 355 ~L~~L~Ls~N~l~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 428 (832)
.++.++++.+.+++.+|. .+..+++|++|++++|++++ +| .+..+++|++|++++|+++. +|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCCcC
Confidence 466666666666666665 77888888888888888885 56 77778888888888888874 56666667888
Q ss_pred CeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCC-hhhhcCCCCCEEeCcCCcCcccCCC
Q 003307 429 TDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLL-PGISKFHNLVYLNLSNNKFEGSIPD 501 (832)
Q Consensus 429 ~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~ip~ 501 (832)
+.|+|++|++++. | .+... .+|++|+|++|++++..+ ..+..+++|+.|++++|++++.+|.
T Consensus 96 ~~L~L~~N~l~~l-~-~~~~l---------~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 96 EELWISYNQIASL-S-GIEKL---------VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp SEEEEEEEECCCH-H-HHHHH---------HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CEEECcCCcCCcC-C-ccccC---------CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 8888888888762 3 22221 248888888888875433 4678888888888888888877665
|
| >4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-12 Score=141.56 Aligned_cols=93 Identities=19% Similarity=0.288 Sum_probs=77.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCC----CceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK----EHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~----~~~~~lv~ 809 (832)
.+.||+|+||+||+|+. .+|+.||||+++.. .....+.+.+|+++|++++|||||++++++.... ....||||
T Consensus 59 ~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~~~ivm 138 (398)
T 4b99_A 59 IETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKSVYVVL 138 (398)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCCEEEEE
T ss_pred EEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCEEEEEE
Confidence 56899999999999997 48999999999643 2334567899999999999999999999876431 12489999
Q ss_pred ecCCCCCHHHHHhcCCCcccc
Q 003307 810 NYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~~l~w~ 830 (832)
|||+ |+|.++++..+.+++.
T Consensus 139 E~~~-g~L~~~i~~~~~l~~~ 158 (398)
T 4b99_A 139 DLME-SDLHQIIHSSQPLTLE 158 (398)
T ss_dssp ECCS-EEHHHHHTSSSCCCHH
T ss_pred eCCC-CCHHHHHHhcCCCCHH
Confidence 9996 7899999988887764
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3.5e-12 Score=146.27 Aligned_cols=91 Identities=19% Similarity=0.313 Sum_probs=80.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|+||.||+|+. .+|+.||||++........+.+.+|+++|++++|||||++++++.+.+. .++|||||++|
T Consensus 162 ~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~--~~iv~E~~~gg 239 (573)
T 3uto_A 162 HEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNE--MVMIYEFMSGG 239 (573)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSE--EEEEEECCCCC
T ss_pred EEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCE--EEEEEeecCCC
Confidence 56899999999999997 4899999999976655566789999999999999999999999998777 99999999999
Q ss_pred CHHHHHhcC-CCccc
Q 003307 816 SLAVYLQGK-GLVLW 829 (832)
Q Consensus 816 sL~~~l~~~-~~l~w 829 (832)
+|+++|..+ +.+++
T Consensus 240 ~L~~~i~~~~~~l~e 254 (573)
T 3uto_A 240 ELFEKVADEHNKMSE 254 (573)
T ss_dssp BHHHHHTCTTSCEEH
T ss_pred cHHHHHHHhCCCCCH
Confidence 999999754 45654
|
| >3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.9e-12 Score=132.30 Aligned_cols=92 Identities=26% Similarity=0.495 Sum_probs=81.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|+||.||+|+.. +|+.||||++........+.|.+|++++.+++|||||+++++|...+. .++||||+++|
T Consensus 15 ~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~e~~~~~ 92 (310)
T 3s95_A 15 GEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKR--LNFITEYIKGG 92 (310)
T ss_dssp EEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTE--EEEEEECCTTC
T ss_pred cceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCe--eEEEEEecCCC
Confidence 678999999999999984 799999999876666667889999999999999999999999998776 99999999999
Q ss_pred CHHHHHhc-CCCcccc
Q 003307 816 SLAVYLQG-KGLVLWF 830 (832)
Q Consensus 816 sL~~~l~~-~~~l~w~ 830 (832)
+|.++++. ...++|.
T Consensus 93 ~L~~~l~~~~~~~~~~ 108 (310)
T 3s95_A 93 TLRGIIKSMDSQYPWS 108 (310)
T ss_dssp BHHHHHHHCCTTSCHH
T ss_pred cHHHHHHhccCCCCHH
Confidence 99999987 4556653
|
| >3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A | Back alignment and structure |
|---|
Probab=99.28 E-value=8.1e-12 Score=142.44 Aligned_cols=92 Identities=20% Similarity=0.270 Sum_probs=75.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh---hhHH---HHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA---KGKK---EFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~---~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
..+||+|+||+||+|+.. +|+.||||+++.... .... ....++++++.++|||||++++++.+.+. .|+||
T Consensus 194 ~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~--lylVm 271 (689)
T 3v5w_A 194 HRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDK--LSFIL 271 (689)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSE--EEEEE
T ss_pred EEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCE--EEEEE
Confidence 578999999999999974 899999999953211 1122 23345677888999999999999998877 99999
Q ss_pred ecCCCCCHHHHHhcCCCcccc
Q 003307 810 NYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~~l~w~ 830 (832)
|||+||+|+++|+..+.+++.
T Consensus 272 Ey~~GGdL~~~l~~~~~l~E~ 292 (689)
T 3v5w_A 272 DLMNGGDLHYHLSQHGVFSEA 292 (689)
T ss_dssp CCCCSCBHHHHHHHHCCCCHH
T ss_pred ecCCCCcHHHHHHhcCCCCHH
Confidence 999999999999987777754
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.28 E-value=8.6e-12 Score=134.72 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=73.2
Q ss_pred EEEcCCC-CCcccCCCCCCCCCCCEEECCC-CCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCC
Q 003307 94 NVSVSNN-QLMGNITDIGSIQSLEFLDLSH-NLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRAN 171 (832)
Q Consensus 94 ~L~Ls~n-~l~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 171 (832)
.++++++ .+++.++ +..+++|++|+|++ |.|+++.+..|.+|++|++|+|++|+|++..|..|.++++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4577776 6776555 77777777777775 7777777777777777777777777777777777777777777777777
Q ss_pred CCCCccchhhhcCCCCCEEECccCcCc
Q 003307 172 RFGGDIMHLLSQLGSVVHVDLSNNQFS 198 (832)
Q Consensus 172 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 198 (832)
+|++..+..|..++ |++|+|.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 77766666565554 666666666655
|
| >2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-11 Score=130.31 Aligned_cols=90 Identities=20% Similarity=0.200 Sum_probs=78.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+.. +|+.||||+++.......+.|.+|++++++++|||||+++++|...+. .++||||+++|
T Consensus 50 ~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~--~~lv~e~~~~~ 127 (321)
T 2c30_A 50 YVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEE--LWVLMEFLQGG 127 (321)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTTBCCEEEEEEETTE--EEEEECCCCSC
T ss_pred cEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCcceEEEEEEECCE--EEEEEecCCCC
Confidence 347999999999999985 899999999976555556789999999999999999999999988776 99999999999
Q ss_pred CHHHHHhcCCCccc
Q 003307 816 SLAVYLQGKGLVLW 829 (832)
Q Consensus 816 sL~~~l~~~~~l~w 829 (832)
+|.+++... .++|
T Consensus 128 ~L~~~l~~~-~l~~ 140 (321)
T 2c30_A 128 ALTDIVSQV-RLNE 140 (321)
T ss_dssp BHHHHHTTC-CCCH
T ss_pred CHHHHHHhc-CCCH
Confidence 999998753 4555
|
| >2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.4e-11 Score=131.48 Aligned_cols=92 Identities=22% Similarity=0.298 Sum_probs=79.8
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh------hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA------KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~------~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
.+.||+|+||.||+|+.. +|+.||||.++.... ...+.+.+|++++.+++|||||++++++...+. .++||
T Consensus 17 ~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~--~~lv~ 94 (361)
T 2yab_A 17 GEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTD--VVLIL 94 (361)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE--EEEEE
T ss_pred eeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCE--EEEEE
Confidence 678999999999999974 799999999854321 135779999999999999999999999988776 99999
Q ss_pred ecCCCCCHHHHHhcCCCcccc
Q 003307 810 NYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~~l~w~ 830 (832)
|||++|+|.+++...+.+++.
T Consensus 95 e~~~gg~L~~~l~~~~~l~~~ 115 (361)
T 2yab_A 95 ELVSGGELFDFLAQKESLSEE 115 (361)
T ss_dssp ECCCSCBHHHHHTTCSCCBHH
T ss_pred EcCCCCcHHHHHHhcCCCCHH
Confidence 999999999999887777653
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=7.1e-12 Score=133.78 Aligned_cols=87 Identities=32% Similarity=0.527 Sum_probs=77.9
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
...||+|+||.||+|+..+|+.||||++........+.|.+|++++++++|||||+++++|...+. .++||||+++|+
T Consensus 44 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~~~~ 121 (321)
T 2qkw_B 44 KFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNE--MILIYKYMENGN 121 (321)
T ss_dssp CCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTC--CEEEEECCTTCB
T ss_pred cceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCe--EEEEEEcCCCCc
Confidence 678999999999999988899999999876555556789999999999999999999999987776 999999999999
Q ss_pred HHHHHhcCC
Q 003307 817 LAVYLQGKG 825 (832)
Q Consensus 817 L~~~l~~~~ 825 (832)
|.++++...
T Consensus 122 L~~~l~~~~ 130 (321)
T 2qkw_B 122 LKRHLYGSD 130 (321)
T ss_dssp TGGGSSSSC
T ss_pred HHHHHhccC
Confidence 999987543
|
| >2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-11 Score=133.37 Aligned_cols=92 Identities=24% Similarity=0.474 Sum_probs=78.0
Q ss_pred cCeeeeccCceEEEEEEC----CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD----SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|+||.||+|+.. ++..||||+++.. .....++|.+|++++++++|||||+++++|...+. .++||||
T Consensus 50 ~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~--~~lv~e~ 127 (373)
T 2qol_A 50 DKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKP--VMIVTEY 127 (373)
T ss_dssp CEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS--CEEEEEC
T ss_pred eeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCc--eEEEEeC
Confidence 678999999999999863 5778999999654 33446789999999999999999999999988777 9999999
Q ss_pred CCCCCHHHHHhcCC-Ccccc
Q 003307 812 INAQSLAVYLQGKG-LVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~-~l~w~ 830 (832)
|++|+|.++++..+ .++|.
T Consensus 128 ~~~~sL~~~l~~~~~~~~~~ 147 (373)
T 2qol_A 128 MENGSLDSFLRKHDAQFTVI 147 (373)
T ss_dssp CTTCBHHHHHHTTTTCSCHH
T ss_pred CCCCcHHHHHHhCCCCCCHH
Confidence 99999999998654 46653
|
| >3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-11 Score=129.73 Aligned_cols=91 Identities=22% Similarity=0.271 Sum_probs=79.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+. .+|+.||||++... .....+.+.+|++++++++||||+++++++...+. .++|||||+
T Consensus 20 ~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~--~~lv~e~~~ 97 (328)
T 3fe3_A 20 LKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKT--LYLIMEYAS 97 (328)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEECCCT
T ss_pred EEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCE--EEEEEECCC
Confidence 67899999999999997 58999999998543 33345678999999999999999999999988776 999999999
Q ss_pred CCCHHHHHhcCCCccc
Q 003307 814 AQSLAVYLQGKGLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w 829 (832)
+|+|.+++...+.+++
T Consensus 98 ~~~L~~~l~~~~~l~~ 113 (328)
T 3fe3_A 98 GGEVFDYLVAHGRMKE 113 (328)
T ss_dssp TCBHHHHHHHHCCCCH
T ss_pred CCcHHHHHHHcCCCCH
Confidence 9999999987766654
|
| >3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=4.1e-11 Score=126.25 Aligned_cols=86 Identities=24% Similarity=0.346 Sum_probs=76.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|+||.||+|+. .+|+.||||++........+.+.+|+.++++++|||||++++++...+. .++|||||++|
T Consensus 25 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~e~~~~~ 102 (297)
T 3fxz_A 25 FEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDE--LWVVMEYLAGG 102 (297)
T ss_dssp CEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTE--EEEEEECCTTC
T ss_pred eeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCE--EEEEEECCCCC
Confidence 67899999999999996 5899999999865444446779999999999999999999999988777 99999999999
Q ss_pred CHHHHHhcC
Q 003307 816 SLAVYLQGK 824 (832)
Q Consensus 816 sL~~~l~~~ 824 (832)
+|.+++...
T Consensus 103 ~L~~~~~~~ 111 (297)
T 3fxz_A 103 SLTDVVTET 111 (297)
T ss_dssp BHHHHHHHS
T ss_pred CHHHHHhhc
Confidence 999999765
|
| >2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.4e-11 Score=127.82 Aligned_cols=92 Identities=22% Similarity=0.318 Sum_probs=79.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh------hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA------KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~------~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
.+.||+|+||.||+|+.. +|+.||||.++.... ...+.+.+|++++.+++|||||++++++...+. .++||
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~ 93 (326)
T 2y0a_A 16 GEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTD--VILIL 93 (326)
T ss_dssp EEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEE
T ss_pred ceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCE--EEEEE
Confidence 678999999999999974 799999999854321 135779999999999999999999999988776 99999
Q ss_pred ecCCCCCHHHHHhcCCCcccc
Q 003307 810 NYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~~l~w~ 830 (832)
||+++|+|.+++...+.+++.
T Consensus 94 e~~~~~~L~~~l~~~~~~~~~ 114 (326)
T 2y0a_A 94 ELVAGGELFDFLAEKESLTEE 114 (326)
T ss_dssp ECCCSCBHHHHHTTSSCCBHH
T ss_pred EcCCCCCHHHHHHhcCCcCHH
Confidence 999999999999887777653
|
| >3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.8e-11 Score=125.12 Aligned_cols=92 Identities=16% Similarity=0.230 Sum_probs=80.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|+||.||+|+.. ++..||+|++........+.|.+|++++.+++||||++++++|...+. .++||||+++|
T Consensus 14 ~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~~ 91 (277)
T 3f3z_A 14 ENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTD--IYLVMELCTGG 91 (277)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE--EEEEEECCCSC
T ss_pred eeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCe--EEEEEeccCCC
Confidence 678999999999999985 688999999865444456789999999999999999999999987776 99999999999
Q ss_pred CHHHHHhcCCCcccc
Q 003307 816 SLAVYLQGKGLVLWF 830 (832)
Q Consensus 816 sL~~~l~~~~~l~w~ 830 (832)
+|.+++...+.++|.
T Consensus 92 ~L~~~~~~~~~~~~~ 106 (277)
T 3f3z_A 92 ELFERVVHKRVFRES 106 (277)
T ss_dssp BHHHHHHHHCSCCHH
T ss_pred cHHHHHHHcCCCCHH
Confidence 999999877766653
|
| >2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.1e-11 Score=131.41 Aligned_cols=91 Identities=20% Similarity=0.316 Sum_probs=74.6
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.++||+|+||.||+|+. .+|+.||||+++.......++|.+|++++.+++|||||+++++|...+. .++|||||++|
T Consensus 94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~--~~lv~E~~~~~ 171 (373)
T 2x4f_A 94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKND--IVLVMEYVDGG 171 (373)
T ss_dssp EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE--EEEEEECCTTC
T ss_pred ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCE--EEEEEeCCCCC
Confidence 46799999999999997 4799999999976665567789999999999999999999999998776 99999999999
Q ss_pred CHHHHHhcCC-Cccc
Q 003307 816 SLAVYLQGKG-LVLW 829 (832)
Q Consensus 816 sL~~~l~~~~-~l~w 829 (832)
+|.+++...+ .++|
T Consensus 172 ~L~~~l~~~~~~l~~ 186 (373)
T 2x4f_A 172 ELFDRIIDESYNLTE 186 (373)
T ss_dssp EEHHHHHHTGGGCCH
T ss_pred cHHHHHHhcCCCCCH
Confidence 9999987543 4554
|
| >3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ... | Back alignment and structure |
|---|
Probab=99.18 E-value=2.6e-11 Score=127.70 Aligned_cols=93 Identities=24% Similarity=0.445 Sum_probs=78.2
Q ss_pred cCeeeeccCceEEEEEE-----CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATL-----DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
...||+|+||.||+|++ .+|+.||||++........+.|.+|++++.+++||||++++++|...+....++||||
T Consensus 15 ~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~ 94 (295)
T 3ugc_A 15 LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEY 94 (295)
T ss_dssp EEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCEEEEEC
T ss_pred hheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceEEEEEe
Confidence 67899999999999984 3789999999976666666789999999999999999999999865432237999999
Q ss_pred CCCCCHHHHHhcCC-Cccc
Q 003307 812 INAQSLAVYLQGKG-LVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~~-~l~w 829 (832)
+++|+|.++++..+ .++|
T Consensus 95 ~~~~~L~~~l~~~~~~~~~ 113 (295)
T 3ugc_A 95 LPYGSLRDYLQKHKERIDH 113 (295)
T ss_dssp CTTCBHHHHHHHCGGGCCH
T ss_pred CCCCCHHHHHHhcccccCH
Confidence 99999999998654 3554
|
| >4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.5e-11 Score=125.05 Aligned_cols=92 Identities=22% Similarity=0.268 Sum_probs=79.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+.. +|+.||||++... .....+.|.+|++++.+++||||+++++++...+. .++||||+
T Consensus 16 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~e~~ 93 (294)
T 4eqm_A 16 VDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDC--YYLVMEYI 93 (294)
T ss_dssp EEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSE--EEEEEECC
T ss_pred EEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCe--EEEEEeCC
Confidence 578999999999999974 7999999988432 23345679999999999999999999999987776 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.+++...+.++|.
T Consensus 94 ~g~~L~~~l~~~~~~~~~ 111 (294)
T 4eqm_A 94 EGPTLSEYIESHGPLSVD 111 (294)
T ss_dssp CSCBHHHHHHHHCSCCHH
T ss_pred CCCCHHHHHHhcCCCCHH
Confidence 999999999877766653
|
| >3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.7e-11 Score=127.55 Aligned_cols=91 Identities=23% Similarity=0.495 Sum_probs=76.9
Q ss_pred cCeeeeccCceEEEEEEC----CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD----SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
...||+|+||.||+|+.. .+..||||+++.. .....+.|.+|++++.+++|||||+++++|...+. .++||||
T Consensus 54 ~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~ 131 (325)
T 3kul_A 54 EKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRL--AMIVTEY 131 (325)
T ss_dssp EEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGC--CEEEEEC
T ss_pred eeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCc--cEEEeeC
Confidence 678999999999999973 3446999999654 34446789999999999999999999999987766 8999999
Q ss_pred CCCCCHHHHHhcC-CCccc
Q 003307 812 INAQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~-~~l~w 829 (832)
|++|+|.++++.. +.++|
T Consensus 132 ~~~~~L~~~l~~~~~~~~~ 150 (325)
T 3kul_A 132 MENGSLDTFLRTHDGQFTI 150 (325)
T ss_dssp CTTCBHHHHHHTTTTCSCH
T ss_pred CCCCcHHHHHHhcccCCCH
Confidence 9999999999754 45554
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.7e-13 Score=147.13 Aligned_cols=109 Identities=14% Similarity=0.114 Sum_probs=51.3
Q ss_pred CCCCEEEcCCCCCcccCC-CCC-----CCCCCCEEECCCCCCCccCcccc-cCCCCCCEEEcccccccccCCCCC-----
Q 003307 90 KMLCNVSVSNNQLMGNIT-DIG-----SIQSLEFLDLSHNLFHGLIPSGI-VSLKNLMLLNISSNSFEGTFPSGF----- 157 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~-~~~-----~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~----- 157 (832)
+.|+.|+|++|.++.... .+. ..++|++|+|++|.|+......+ ..+++|++|+|++|.|+......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 455666666666554322 111 12456666666666553322222 223455555555555543322222
Q ss_pred CCCCCCCEeeCcCCCCCCc----cchhhhcCCCCCEEECccCcCc
Q 003307 158 GGLGKLKYLDLRANRFGGD----IMHLLSQLGSVVHVDLSNNQFS 198 (832)
Q Consensus 158 ~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~ 198 (832)
...++|++|+|++|.|+.. ++..+..+++|++|+|++|.++
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 2344555555555555432 2223344555555555555544
|
| >1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... | Back alignment and structure |
|---|
Probab=99.18 E-value=4.1e-11 Score=128.41 Aligned_cols=91 Identities=20% Similarity=0.258 Sum_probs=78.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||+||+|+.. +|+.||||+++.. .....+.+.+|++++.+++||||+++++++...+. .++|||||
T Consensus 10 ~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~--~~lv~E~~ 87 (337)
T 1o6l_A 10 LKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDR--LCFVMEYA 87 (337)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSE--EEEEEECC
T ss_pred EEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCE--EEEEEeCC
Confidence 678999999999999974 7999999998543 12235678999999999999999999999998777 99999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.+++...+.+++
T Consensus 88 ~gg~L~~~l~~~~~~~~ 104 (337)
T 1o6l_A 88 NGGELFFHLSRERVFTE 104 (337)
T ss_dssp TTCBHHHHHHHHSCCCH
T ss_pred CCCcHHHHHHhcCCCCH
Confidence 99999999987766665
|
| >4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.4e-11 Score=134.64 Aligned_cols=92 Identities=18% Similarity=0.177 Sum_probs=77.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh---hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA---KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.++||+|+||+||+|+.. +|+.||||+++.... ...+.+.+|++++.+++|||||+++++|.+.+. .++|||||
T Consensus 79 ~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~--~~lV~Ey~ 156 (437)
T 4aw2_A 79 LKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDNN--LYLVMDYY 156 (437)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSSE--EEEEECCC
T ss_pred EEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCE--EEEEEecC
Confidence 678999999999999985 689999999854211 112348899999999999999999999998777 99999999
Q ss_pred CCCCHHHHHhc-CCCcccc
Q 003307 813 NAQSLAVYLQG-KGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~-~~~l~w~ 830 (832)
++|+|.++++. .+.+++.
T Consensus 157 ~gg~L~~~l~~~~~~l~e~ 175 (437)
T 4aw2_A 157 VGGDLLTLLSKFEDRLPEE 175 (437)
T ss_dssp TTCBHHHHHHTTTTCCCHH
T ss_pred CCCcHHHHHHHccCCCCHH
Confidence 99999999987 4556653
|
| >2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B | Back alignment and structure |
|---|
Probab=99.18 E-value=6.4e-11 Score=128.44 Aligned_cols=92 Identities=15% Similarity=0.229 Sum_probs=79.7
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|+||.||+|+.. +|+.||||++... .....+.+.+|++++.+++|||||+++++|...+. .++|||||+
T Consensus 34 ~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~--~~lv~e~~~ 111 (362)
T 2bdw_A 34 KEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESF--HYLVFDLVT 111 (362)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEECCCC
T ss_pred eeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCE--EEEEEecCC
Confidence 678999999999999974 7999999998543 23345678999999999999999999999998776 999999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
+|+|.+++..++.+++.
T Consensus 112 gg~L~~~l~~~~~~~~~ 128 (362)
T 2bdw_A 112 GGELFEDIVAREFYSEA 128 (362)
T ss_dssp SCBHHHHHTTCSCCCHH
T ss_pred CCCHHHHHHHcCCCCHH
Confidence 99999999887766653
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.4e-11 Score=129.90 Aligned_cols=97 Identities=34% Similarity=0.609 Sum_probs=79.3
Q ss_pred cchhhhcccc-----cCeeeeccCceEEEEEECCCCEEEEEEeccCCh-hhHHHHHHHHHHHhcCCCCcceeeeeEEECC
Q 003307 727 FTAEELSHAP-----AEVIGRSCHGTLYKATLDSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNLVSLQGYYWGP 800 (832)
Q Consensus 727 ~~~~~l~~~~-----~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~-~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~ 800 (832)
|+.+++..+. .+.||+|+||.||+|+..+|+.||||++..... .....|.+|++++.+++||||++++++|...
T Consensus 20 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~ 99 (326)
T 3uim_A 20 FSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP 99 (326)
T ss_dssp CCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEECCS
T ss_pred ecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEEecC
Confidence 4555554432 568999999999999988899999999865322 2234689999999999999999999999887
Q ss_pred CCceEEEEEecCCCCCHHHHHhcCC
Q 003307 801 KEHEKLVISNYINAQSLAVYLQGKG 825 (832)
Q Consensus 801 ~~~~~~lv~e~~~~GsL~~~l~~~~ 825 (832)
+. .++|||||++|+|.++++...
T Consensus 100 ~~--~~lv~e~~~~~~L~~~l~~~~ 122 (326)
T 3uim_A 100 TE--RLLVYPYMANGSVASCLRERP 122 (326)
T ss_dssp SC--CEEEEECCTTCBHHHHHHCCS
T ss_pred Cc--eEEEEEeccCCCHHHHHHhcc
Confidence 77 899999999999999998654
|
| >4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=8e-11 Score=122.04 Aligned_cols=90 Identities=22% Similarity=0.353 Sum_probs=78.0
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
...||+|+||.||+|+..++..||||++..... ..++|.+|++++.+++||||+++++++...+. .++||||+++|+
T Consensus 15 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~~~ 91 (269)
T 4hcu_A 15 VQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAP--ICLVFEFMEHGC 91 (269)
T ss_dssp EEEEEECSSCEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS--EEEEEECCTTCB
T ss_pred eheecCCCccEEEEEEecCCCeEEEEEeccccc-CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCc--eEEEEEeCCCCc
Confidence 568999999999999998888999999965432 34679999999999999999999999988777 999999999999
Q ss_pred HHHHHhcCC-Cccc
Q 003307 817 LAVYLQGKG-LVLW 829 (832)
Q Consensus 817 L~~~l~~~~-~l~w 829 (832)
|.++++... .+++
T Consensus 92 L~~~l~~~~~~~~~ 105 (269)
T 4hcu_A 92 LSDYLRTQRGLFAA 105 (269)
T ss_dssp HHHHHHTTTTCCCH
T ss_pred HHHHHHhcCcccCH
Confidence 999997643 3554
|
| >2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A | Back alignment and structure |
|---|
Probab=99.17 E-value=5.2e-11 Score=126.69 Aligned_cols=91 Identities=15% Similarity=0.172 Sum_probs=79.1
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
+++||+|+||.||+|+. .+|+.||||++........+.+.+|++++.++ +||||+++++++...+. .++|||||++
T Consensus 18 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~--~~lv~e~~~~ 95 (316)
T 2ac3_A 18 EDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDR--FYLVFEKMRG 95 (316)
T ss_dssp CCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTE--EEEEEECCTT
T ss_pred CceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCE--EEEEEEcCCC
Confidence 46799999999999996 48999999999655444567899999999985 79999999999988776 9999999999
Q ss_pred CCHHHHHhcCCCccc
Q 003307 815 QSLAVYLQGKGLVLW 829 (832)
Q Consensus 815 GsL~~~l~~~~~l~w 829 (832)
|+|.++++..+.+++
T Consensus 96 ~~L~~~l~~~~~~~~ 110 (316)
T 2ac3_A 96 GSILSHIHKRRHFNE 110 (316)
T ss_dssp CBHHHHHHHHSSCCH
T ss_pred CcHHHHHhccCCCCH
Confidence 999999987766665
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=6.3e-11 Score=125.52 Aligned_cols=86 Identities=35% Similarity=0.485 Sum_probs=75.7
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|+. +|..||||++... .....++|.+|++++.+++|||||++++++...+. .++|||||++
T Consensus 42 ~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~e~~~~ 118 (309)
T 3p86_A 42 KEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPN--LSIVTEYLSR 118 (309)
T ss_dssp EEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTC--CEEEEECCTT
T ss_pred eeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCc--eEEEEecCCC
Confidence 57899999999999987 6889999998543 23345679999999999999999999999988777 9999999999
Q ss_pred CCHHHHHhcCC
Q 003307 815 QSLAVYLQGKG 825 (832)
Q Consensus 815 GsL~~~l~~~~ 825 (832)
|+|.++++..+
T Consensus 119 ~~L~~~l~~~~ 129 (309)
T 3p86_A 119 GSLYRLLHKSG 129 (309)
T ss_dssp CBHHHHHHSTT
T ss_pred CcHHHHHhhcC
Confidence 99999998765
|
| >1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.17 E-value=5.8e-11 Score=126.22 Aligned_cols=92 Identities=20% Similarity=0.260 Sum_probs=79.0
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+.. +|+.||||+++... ....+.+.+|+.++..++|||||++++++.+.+. .++||||+
T Consensus 11 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~--~~lv~e~~ 88 (318)
T 1fot_A 11 LRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQ--IFMIMDYI 88 (318)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSE--EEEEECCC
T ss_pred EEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCE--EEEEEeCC
Confidence 678999999999999974 89999999985431 1234668899999999999999999999987776 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.++++..+.+++.
T Consensus 89 ~gg~L~~~l~~~~~~~~~ 106 (318)
T 1fot_A 89 EGGELFSLLRKSQRFPNP 106 (318)
T ss_dssp CSCBHHHHHHHTSSCCHH
T ss_pred CCCCHHHHHHHcCCCCHH
Confidence 999999999987776653
|
| >3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A | Back alignment and structure |
|---|
Probab=99.17 E-value=8.2e-11 Score=125.62 Aligned_cols=89 Identities=18% Similarity=0.232 Sum_probs=78.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
+..||+|+||.||+|+.. +|+.||||++... ....+.+|++++.+++ |||||++++++.+... .++|||||++
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~--~~lv~e~~~~ 90 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHDQLH--TFLVMELLNG 90 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSE--EEEEECCCCS
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCE--EEEEEEccCC
Confidence 578999999999999984 7999999998543 3467889999999997 9999999999998776 9999999999
Q ss_pred CCHHHHHhcCCCcccc
Q 003307 815 QSLAVYLQGKGLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~~~l~w~ 830 (832)
|+|.++++..+.+++.
T Consensus 91 ~~L~~~l~~~~~~~~~ 106 (325)
T 3kn6_A 91 GELFERIKKKKHFSET 106 (325)
T ss_dssp CBHHHHHHHCSCCCHH
T ss_pred CcHHHHHHhcCCCCHH
Confidence 9999999988777663
|
| >1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.16 E-value=8.1e-11 Score=128.56 Aligned_cols=91 Identities=15% Similarity=0.288 Sum_probs=79.6
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|+||.||+|+.. +|+.||+|.+..........+.+|++++.+++|||||++++++...+. .++|||||++|
T Consensus 56 ~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~--~~lv~E~~~gg 133 (387)
T 1kob_A 56 LEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYE--MVLILEFLSGG 133 (387)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSE--EEEEEECCCCC
T ss_pred EEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCE--EEEEEEcCCCC
Confidence 568999999999999974 799999999976555556789999999999999999999999987776 99999999999
Q ss_pred CHHHHHhcCC-Cccc
Q 003307 816 SLAVYLQGKG-LVLW 829 (832)
Q Consensus 816 sL~~~l~~~~-~l~w 829 (832)
+|.+++.... .+++
T Consensus 134 ~L~~~l~~~~~~l~~ 148 (387)
T 1kob_A 134 ELFDRIAAEDYKMSE 148 (387)
T ss_dssp BHHHHTTCTTCCBCH
T ss_pred cHHHHHHhhcCCCCH
Confidence 9999997654 5655
|
| >4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=5.3e-11 Score=124.78 Aligned_cols=91 Identities=18% Similarity=0.292 Sum_probs=78.3
Q ss_pred cCeeeeccCceEEEEEEC-CC-------CEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SG-------SILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g-------~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv 808 (832)
.+.||+|+||.||+|+.. +| ..||+|++........+.|.+|++++++++|||||+++++|...+. .++|
T Consensus 13 ~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv 90 (289)
T 4fvq_A 13 NESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDE--NILV 90 (289)
T ss_dssp EEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTC--CEEE
T ss_pred eeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCC--CEEE
Confidence 678999999999999863 44 5799999976555567889999999999999999999999988777 8999
Q ss_pred EecCCCCCHHHHHhcCCC-ccc
Q 003307 809 SNYINAQSLAVYLQGKGL-VLW 829 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~~-l~w 829 (832)
|||+++|+|.++++..+. +++
T Consensus 91 ~e~~~~~~L~~~l~~~~~~~~~ 112 (289)
T 4fvq_A 91 QEFVKFGSLDTYLKKNKNCINI 112 (289)
T ss_dssp EECCTTCBHHHHHHHTGGGCCH
T ss_pred EECCCCCCHHHHHHhCCCCCCH
Confidence 999999999999987653 544
|
| >2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.7e-11 Score=128.85 Aligned_cols=90 Identities=21% Similarity=0.318 Sum_probs=72.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+.. +++.||||+++... ..+.+.+|++++.+++|||||+++++|...+. .++||||+++|
T Consensus 58 ~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~--~~lv~e~~~~~ 133 (349)
T 2w4o_A 58 ESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTE--ISLVLELVTGG 133 (349)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSE--EEEEECCCCSC
T ss_pred eeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCe--EEEEEEeCCCC
Confidence 578999999999999985 78999999996532 34668899999999999999999999988776 99999999999
Q ss_pred CHHHHHhcCCCcccc
Q 003307 816 SLAVYLQGKGLVLWF 830 (832)
Q Consensus 816 sL~~~l~~~~~l~w~ 830 (832)
+|.+++..++.+++.
T Consensus 134 ~L~~~l~~~~~~~~~ 148 (349)
T 2w4o_A 134 ELFDRIVEKGYYSER 148 (349)
T ss_dssp BHHHHHTTCSSCCHH
T ss_pred CHHHHHHhcCCCCHH
Confidence 999999887776653
|
| >3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=6.1e-11 Score=122.91 Aligned_cols=92 Identities=22% Similarity=0.322 Sum_probs=77.9
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||.||+|+.. |..||||+++.. .....+.|.+|++++++++||||++++++|...+....++||||+++
T Consensus 15 ~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~ 93 (271)
T 3kmu_A 15 LTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPY 93 (271)
T ss_dssp EEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEEECCTT
T ss_pred HHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeeecccCC
Confidence 578999999999999984 899999998643 33445779999999999999999999999987733338999999999
Q ss_pred CCHHHHHhcCCC--ccc
Q 003307 815 QSLAVYLQGKGL--VLW 829 (832)
Q Consensus 815 GsL~~~l~~~~~--l~w 829 (832)
|+|.++++.... ++|
T Consensus 94 ~~L~~~l~~~~~~~~~~ 110 (271)
T 3kmu_A 94 GSLYNVLHEGTNFVVDQ 110 (271)
T ss_dssp CBHHHHHHSCSSCCCCH
T ss_pred CcHHHHHhhcccCCCCH
Confidence 999999987653 555
|
| >4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=8.6e-11 Score=125.20 Aligned_cols=89 Identities=18% Similarity=0.317 Sum_probs=76.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.++||+|+||.||+|+.. +|+.||||+++... ....+.+.+|++++.+++|||||++++++........++||||+++
T Consensus 14 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~ 93 (319)
T 4euu_A 14 SDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPC 93 (319)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEEECCTT
T ss_pred EEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEEeCCCC
Confidence 678999999999999985 69999999986432 2345778999999999999999999999987664348999999999
Q ss_pred CCHHHHHhcCC
Q 003307 815 QSLAVYLQGKG 825 (832)
Q Consensus 815 GsL~~~l~~~~ 825 (832)
|+|.+++....
T Consensus 94 ~~L~~~l~~~~ 104 (319)
T 4euu_A 94 GSLYTVLEEPS 104 (319)
T ss_dssp CBHHHHHHSGG
T ss_pred CCHHHHHHHhc
Confidence 99999998644
|
| >1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.15 E-value=9.3e-11 Score=124.93 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=77.7
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|+||.||+|+.. +|+.||+|.+.... .....+.+|++++.+++|||||++++++...+. .++|||||++|
T Consensus 10 ~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~--~~lv~e~~~g~ 86 (321)
T 1tki_A 10 AEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESMEE--LVMIFEFISGL 86 (321)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTE--EEEEECCCCCC
T ss_pred eeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCE--EEEEEEeCCCC
Confidence 678999999999999974 78999999986443 345678999999999999999999999988776 99999999999
Q ss_pred CHHHHHhcCC-Cccc
Q 003307 816 SLAVYLQGKG-LVLW 829 (832)
Q Consensus 816 sL~~~l~~~~-~l~w 829 (832)
+|.+++...+ .+++
T Consensus 87 ~L~~~l~~~~~~~~~ 101 (321)
T 1tki_A 87 DIFERINTSAFELNE 101 (321)
T ss_dssp BHHHHHTSSSCCCCH
T ss_pred CHHHHHHhcCCCCCH
Confidence 9999998654 4554
|
| >4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=5.4e-11 Score=128.23 Aligned_cols=82 Identities=18% Similarity=0.244 Sum_probs=70.7
Q ss_pred cCeeeeccCceEEEEEE----CCCCEEEEEEeccCChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATL----DSGSILAVKRLREGIAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~----~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|+||+||+|+. .+++.||||++.... ....+.+|+++|.++ +|||||++++++.+.+. .++||||
T Consensus 26 ~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~--~~lvmE~ 101 (361)
T 4f9c_A 26 EDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDH--VVIAMPY 101 (361)
T ss_dssp EEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTE--EEEEEEC
T ss_pred EEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEEEECCE--EEEEEeC
Confidence 56899999999999975 257889999985433 345688999999998 69999999999988777 9999999
Q ss_pred CCCCCHHHHHh
Q 003307 812 INAQSLAVYLQ 822 (832)
Q Consensus 812 ~~~GsL~~~l~ 822 (832)
|++|+|.++++
T Consensus 102 ~~g~~L~~~~~ 112 (361)
T 4f9c_A 102 LEHESFLDILN 112 (361)
T ss_dssp CCCCCHHHHHT
T ss_pred CCcccHHHHHc
Confidence 99999999984
|
| >3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=4.2e-11 Score=130.82 Aligned_cols=91 Identities=25% Similarity=0.440 Sum_probs=77.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|+.. +|+.||||.++... ....++|.+|++++++++|||||+++|+|...+. .++|||||++
T Consensus 119 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~--~~lv~e~~~~ 196 (377)
T 3cbl_A 119 GEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQP--IYIVMELVQG 196 (377)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSS--CEEEEECCTT
T ss_pred eeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCC--cEEEEEcCCC
Confidence 678999999999999985 89999999986542 3334579999999999999999999999987777 8999999999
Q ss_pred CCHHHHHhcCC-Cccc
Q 003307 815 QSLAVYLQGKG-LVLW 829 (832)
Q Consensus 815 GsL~~~l~~~~-~l~w 829 (832)
|+|.++++..+ .+++
T Consensus 197 g~L~~~l~~~~~~~~~ 212 (377)
T 3cbl_A 197 GDFLTFLRTEGARLRV 212 (377)
T ss_dssp CBHHHHHHHHGGGCCH
T ss_pred CCHHHHHHhcCCCCCH
Confidence 99999998643 3544
|
| >3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=9.5e-11 Score=126.12 Aligned_cols=92 Identities=20% Similarity=0.245 Sum_probs=78.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC---ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG---IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
...||+|+||.||+|+.. +|+.||||+++.. .....+.+.+|.+++.++ +|||||++++++...+. .++||||
T Consensus 14 ~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~--~~lv~e~ 91 (345)
T 3a8x_A 14 LRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESR--LFFVIEY 91 (345)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSE--EEEEECC
T ss_pred EEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCE--EEEEEeC
Confidence 678999999999999985 7899999999643 223356688999999987 89999999999988776 9999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
|++|+|.+++...+.+++.
T Consensus 92 ~~gg~L~~~l~~~~~l~~~ 110 (345)
T 3a8x_A 92 VNGGDLMFHMQRQRKLPEE 110 (345)
T ss_dssp CCSCBHHHHHHHHSSCCHH
T ss_pred CCCCcHHHHHHHcCCCCHH
Confidence 9999999999877666653
|
| >3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=7.9e-11 Score=122.00 Aligned_cols=90 Identities=23% Similarity=0.352 Sum_probs=77.7
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
...||+|+||.||+|+..++..||||+++.... ..+++.+|++++.+++||||++++++|..... .++||||+++|+
T Consensus 13 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~~~ 89 (268)
T 3sxs_A 13 LKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYP--IYIVTEYISNGC 89 (268)
T ss_dssp EEEEEEETTEEEEEEEETTTEEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS--EEEEEECCTTCB
T ss_pred eeeeccCCCceEEEEEecCceeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCc--eEEEEEccCCCc
Confidence 578999999999999998888999999965432 35679999999999999999999999987777 999999999999
Q ss_pred HHHHHhcCC-Cccc
Q 003307 817 LAVYLQGKG-LVLW 829 (832)
Q Consensus 817 L~~~l~~~~-~l~w 829 (832)
|.++++..+ .++|
T Consensus 90 L~~~l~~~~~~~~~ 103 (268)
T 3sxs_A 90 LLNYLRSHGKGLEP 103 (268)
T ss_dssp HHHHHHHHGGGCCH
T ss_pred HHHHHHHcCCCCCH
Confidence 999997643 3544
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-10 Score=123.13 Aligned_cols=90 Identities=26% Similarity=0.413 Sum_probs=76.3
Q ss_pred CeeeeccCceEEEEEECCCCEEEEEEeccC----ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 738 EVIGRSCHGTLYKATLDSGSILAVKRLREG----IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~----~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
+.||+|+||.||+|+. +|+.||||++... .....+.|.+|++++.+++||||+++++++...+. .++||||++
T Consensus 37 ~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~ 113 (307)
T 2nru_A 37 NKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDD--LCLVYVYMP 113 (307)
T ss_dssp CEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS--CEEEEECCT
T ss_pred CccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCeEEEEEEEecCCc--eEEEEEecC
Confidence 6899999999999997 6899999998542 22345779999999999999999999999988777 999999999
Q ss_pred CCCHHHHHhc---CCCcccc
Q 003307 814 AQSLAVYLQG---KGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~---~~~l~w~ 830 (832)
+|+|.+++.. ...++|.
T Consensus 114 ~~~L~~~l~~~~~~~~~~~~ 133 (307)
T 2nru_A 114 NGSLLDRLSCLDGTPPLSWH 133 (307)
T ss_dssp TCBHHHHHHTGGGCCCCCHH
T ss_pred CCcHHHHHHhccCCCCCCHH
Confidence 9999999973 3346653
|
| >3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=6.3e-11 Score=126.70 Aligned_cols=91 Identities=24% Similarity=0.410 Sum_probs=72.8
Q ss_pred cCeeeeccCceEEEEEE----CCCCEEEEEEeccCC----hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATL----DSGSILAVKRLREGI----AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~----~~g~~vAvK~l~~~~----~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv 808 (832)
...||+|+||.||+|+. .+|+.||||+++... ......+.+|++++.+++|||||++++++...+. .++|
T Consensus 22 ~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--~~lv 99 (327)
T 3a62_A 22 LRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK--LYLI 99 (327)
T ss_dssp EEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC--EEEE
T ss_pred EEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE--EEEE
Confidence 67899999999999986 478999999996532 2234568899999999999999999999998777 9999
Q ss_pred EecCCCCCHHHHHhcCCCccc
Q 003307 809 SNYINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~~l~w 829 (832)
||||++|+|.+++...+.+++
T Consensus 100 ~e~~~~~~L~~~l~~~~~~~~ 120 (327)
T 3a62_A 100 LEYLSGGELFMQLEREGIFME 120 (327)
T ss_dssp EECCTTEEHHHHHHHHSSCCH
T ss_pred EeCCCCCcHHHHHHhCCCCCH
Confidence 999999999999987666554
|
| >2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A | Back alignment and structure |
|---|
Probab=99.14 E-value=7.6e-11 Score=124.66 Aligned_cols=91 Identities=20% Similarity=0.343 Sum_probs=76.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+.. +|+.||||.++.......+.+.+|++++.+++||||+++++++...+. .++||||+++|
T Consensus 14 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~~ 91 (304)
T 2jam_A 14 MEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTH--YYLVMQLVSGG 91 (304)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEECCCCSC
T ss_pred eeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCE--EEEEEEcCCCc
Confidence 678999999999999974 899999999975544445678999999999999999999999987776 99999999999
Q ss_pred CHHHHHhcCCCccc
Q 003307 816 SLAVYLQGKGLVLW 829 (832)
Q Consensus 816 sL~~~l~~~~~l~w 829 (832)
+|.+++...+.+++
T Consensus 92 ~L~~~l~~~~~~~~ 105 (304)
T 2jam_A 92 ELFDRILERGVYTE 105 (304)
T ss_dssp BHHHHHHHHSCCCH
T ss_pred cHHHHHHHcCCCCH
Confidence 99999987666654
|
| >3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A | Back alignment and structure |
|---|
Probab=99.14 E-value=8.6e-11 Score=122.81 Aligned_cols=90 Identities=23% Similarity=0.343 Sum_probs=75.1
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
...||+|+||.||+|...++..||||+++.... ..++|.+|++++.+++||||++++++|...+. .++||||+++|+
T Consensus 29 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~~~ 105 (283)
T 3gen_A 29 LKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRP--IFIITEYMANGC 105 (283)
T ss_dssp EEECC---CEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS--EEEEECCCTTCB
T ss_pred HhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCC--eEEEEeccCCCc
Confidence 578999999999999998888999999965432 34679999999999999999999999987777 999999999999
Q ss_pred HHHHHhc-CCCccc
Q 003307 817 LAVYLQG-KGLVLW 829 (832)
Q Consensus 817 L~~~l~~-~~~l~w 829 (832)
|.++++. +..+++
T Consensus 106 L~~~l~~~~~~~~~ 119 (283)
T 3gen_A 106 LLNYLREMRHRFQT 119 (283)
T ss_dssp HHHHHHCGGGCCCH
T ss_pred HHHHHHHhccCCCH
Confidence 9999976 344554
|
| >3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-10 Score=124.24 Aligned_cols=90 Identities=19% Similarity=0.315 Sum_probs=74.7
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC------------
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE------------ 802 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~------------ 802 (832)
.+.||+|+||.||+|+.. +|+.||||+++.. .....+.+.+|++++++++|||||+++++|...+.
T Consensus 11 ~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~ 90 (332)
T 3qd2_B 11 IQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEEMDEIWL 90 (332)
T ss_dssp EEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHHHHC---
T ss_pred eeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhhhhhhhh
Confidence 578999999999999985 8999999998643 23346789999999999999999999999865431
Q ss_pred -------------------------------------------ceEEEEEecCCCCCHHHHHhcCCC
Q 003307 803 -------------------------------------------HEKLVISNYINAQSLAVYLQGKGL 826 (832)
Q Consensus 803 -------------------------------------------~~~~lv~e~~~~GsL~~~l~~~~~ 826 (832)
...++|||||++|+|.++++....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~ 157 (332)
T 3qd2_B 91 KDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCS 157 (332)
T ss_dssp -----------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCS
T ss_pred ccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccC
Confidence 127999999999999999987654
|
| >3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A | Back alignment and structure |
|---|
Probab=99.14 E-value=7.1e-11 Score=128.05 Aligned_cols=91 Identities=21% Similarity=0.272 Sum_probs=78.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+.. +|+.||||++..... ..+.+.+|+.++++++|||||++++++...+. .++|||||++|
T Consensus 25 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~--~~lv~e~~~~~ 101 (361)
T 3uc3_A 25 VKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVILTPTH--LAIIMEYASGG 101 (361)
T ss_dssp EEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEEECCCSC
T ss_pred EEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCE--EEEEEEeCCCC
Confidence 678999999999999985 899999999965432 23668899999999999999999999998776 99999999999
Q ss_pred CHHHHHhcCCCcccc
Q 003307 816 SLAVYLQGKGLVLWF 830 (832)
Q Consensus 816 sL~~~l~~~~~l~w~ 830 (832)
+|.+++...+.+++.
T Consensus 102 ~L~~~l~~~~~~~~~ 116 (361)
T 3uc3_A 102 ELYERICNAGRFSED 116 (361)
T ss_dssp BHHHHHHHHSSCCHH
T ss_pred CHHHHHHhcCCCCHH
Confidence 999999876666653
|
| >4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=7.8e-11 Score=128.30 Aligned_cols=92 Identities=15% Similarity=0.216 Sum_probs=79.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++.+++|||||+++++|...+. .++|||||
T Consensus 20 ~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~--~~lv~e~~ 97 (384)
T 4fr4_A 20 LRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEED--MFMVVDLL 97 (384)
T ss_dssp EEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE--EEEEECCC
T ss_pred EEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCE--EEEEEecC
Confidence 678999999999999974 78999999985421 2234678999999999999999999999998776 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.++++..+.+++.
T Consensus 98 ~gg~L~~~l~~~~~l~~~ 115 (384)
T 4fr4_A 98 LGGDLRYHLQQNVHFKEE 115 (384)
T ss_dssp TTEEHHHHHHTTCCCCHH
T ss_pred CCCcHHHHHHhcCCCCHH
Confidence 999999999987777653
|
| >2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A | Back alignment and structure |
|---|
Probab=99.13 E-value=8.7e-11 Score=127.84 Aligned_cols=87 Identities=25% Similarity=0.418 Sum_probs=74.9
Q ss_pred cCeeeeccCceEEEEEE--------CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEE
Q 003307 737 AEVIGRSCHGTLYKATL--------DSGSILAVKRLREG-IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKL 806 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~--------~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~ 806 (832)
.+.||+|+||.||+|+. .++..||||+++.. .....+.|.+|++++.++ +|||||+++++|...+. .+
T Consensus 86 ~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~--~~ 163 (370)
T 2psq_A 86 GKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGP--LY 163 (370)
T ss_dssp EEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSSSS--CE
T ss_pred eeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccCCC--EE
Confidence 67899999999999985 24567999999654 333456799999999999 89999999999988777 99
Q ss_pred EEEecCCCCCHHHHHhcCC
Q 003307 807 VISNYINAQSLAVYLQGKG 825 (832)
Q Consensus 807 lv~e~~~~GsL~~~l~~~~ 825 (832)
+||||+++|+|.++++..+
T Consensus 164 lv~e~~~~g~L~~~l~~~~ 182 (370)
T 2psq_A 164 VIVEYASKGNLREYLRARR 182 (370)
T ss_dssp EEEECCTTCBHHHHHHHTC
T ss_pred EEEEcCCCCCHHHHHHhhC
Confidence 9999999999999998654
|
| >2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-10 Score=121.31 Aligned_cols=92 Identities=11% Similarity=0.200 Sum_probs=79.2
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+.. +|+.||+|.+... .....+.+.+|++++++++||||+++++++...+. .++||||+
T Consensus 20 ~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~ 97 (294)
T 2rku_A 20 GRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDF--VFVVLELC 97 (294)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE--EEEEEECC
T ss_pred EEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCE--EEEEEecC
Confidence 678999999999999985 7899999998543 23345679999999999999999999999987776 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.+++...+.++|.
T Consensus 98 ~~~~L~~~~~~~~~~~~~ 115 (294)
T 2rku_A 98 RRRSLLELHKRRKALTEP 115 (294)
T ss_dssp TTCBHHHHHHHHCSCCHH
T ss_pred CCCCHHHHHHhcCCCCHH
Confidence 999999999876666653
|
| >3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=124.14 Aligned_cols=93 Identities=20% Similarity=0.407 Sum_probs=79.3
Q ss_pred cCeeeeccCceEEEEEE-----CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATL-----DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|+||.||+|++ .+|+.||||++........+.|.+|++++.+++||||+++++++...+....++||||
T Consensus 28 ~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~ 107 (327)
T 3lxl_A 28 ISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEY 107 (327)
T ss_dssp EEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEEEEEEC
T ss_pred hhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEEEEEee
Confidence 67899999999999984 4788999999976666666789999999999999999999999986554458999999
Q ss_pred CCCCCHHHHHhcC-CCccc
Q 003307 812 INAQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~-~~l~w 829 (832)
+++|+|.+++... ..++|
T Consensus 108 ~~~~~L~~~l~~~~~~~~~ 126 (327)
T 3lxl_A 108 LPSGCLRDFLQRHRARLDA 126 (327)
T ss_dssp CTTCBHHHHHHHHGGGCCH
T ss_pred cCCCCHHHHHHhcccCCCH
Confidence 9999999999763 34554
|
| >3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.9e-11 Score=128.05 Aligned_cols=92 Identities=14% Similarity=0.095 Sum_probs=76.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++.+++|||||++++++...+. .++|||||++
T Consensus 12 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~--~~lv~e~~~~ 89 (323)
T 3tki_A 12 VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNI--QYLFLEYCSG 89 (323)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEEECCTT
T ss_pred eeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCe--EEEEEEcCCC
Confidence 678999999999999975 89999999985432 2234668999999999999999999999997776 9999999999
Q ss_pred CCHHHHHhcCCCcccc
Q 003307 815 QSLAVYLQGKGLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~~~l~w~ 830 (832)
|+|.++++....+++.
T Consensus 90 ~~L~~~l~~~~~~~~~ 105 (323)
T 3tki_A 90 GELFDRIEPDIGMPEP 105 (323)
T ss_dssp EEGGGGSBTTTBCCHH
T ss_pred CcHHHHHhhcCCCCHH
Confidence 9999999877766653
|
| >2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=123.84 Aligned_cols=92 Identities=21% Similarity=0.271 Sum_probs=79.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh------hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA------KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~------~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
.+.||+|+||.||+|+.. +|+.||||.++.... ...+.|.+|++++.+++||||+++++++...+. .++||
T Consensus 17 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~ 94 (321)
T 2a2a_A 17 GEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTD--VVLIL 94 (321)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEE
T ss_pred eeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCE--EEEEE
Confidence 678999999999999975 799999999854321 135789999999999999999999999987776 99999
Q ss_pred ecCCCCCHHHHHhcCCCcccc
Q 003307 810 NYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~~l~w~ 830 (832)
||+++|+|.+++...+.+++.
T Consensus 95 e~~~~~~L~~~l~~~~~~~~~ 115 (321)
T 2a2a_A 95 ELVSGGELFDFLAQKESLSEE 115 (321)
T ss_dssp CCCCSCBHHHHHHTCSCEEHH
T ss_pred EcCCCCcHHHHHHhcCCCCHH
Confidence 999999999999887766653
|
| >3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-10 Score=121.47 Aligned_cols=92 Identities=22% Similarity=0.328 Sum_probs=79.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh------hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA------KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~------~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
...||+|+||.||+|+.. +|+.||||.++.... ...+.|.+|++++.+++||||+++++++...+. .++||
T Consensus 10 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~ 87 (283)
T 3bhy_A 10 GEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTD--VVLIL 87 (283)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEE
T ss_pred HHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCe--EEEEE
Confidence 578999999999999985 799999998854311 136789999999999999999999999988776 99999
Q ss_pred ecCCCCCHHHHHhcCCCcccc
Q 003307 810 NYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~~l~w~ 830 (832)
||+++|+|.+++..++.++|.
T Consensus 88 e~~~~~~L~~~l~~~~~~~~~ 108 (283)
T 3bhy_A 88 ELVSGGELFDFLAEKESLTED 108 (283)
T ss_dssp ECCCSCBHHHHHHHHSSCCHH
T ss_pred eecCCCcHHHHHHhcCCCCHH
Confidence 999999999999876666653
|
| >3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A | Back alignment and structure |
|---|
Probab=99.12 E-value=9.6e-11 Score=122.55 Aligned_cols=85 Identities=14% Similarity=0.084 Sum_probs=74.6
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+.. +|+.||||++.... ....+.|.+|++.+.+++|||||++++++...+. .++||||+
T Consensus 36 ~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~e~~ 113 (286)
T 3uqc_A 36 LIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAG--GLVVAEWI 113 (286)
T ss_dssp EEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTE--EEEEEECC
T ss_pred EEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCc--EEEEEEec
Confidence 568999999999999985 69999999996542 2334779999999999999999999999988776 99999999
Q ss_pred CCCCHHHHHhc
Q 003307 813 NAQSLAVYLQG 823 (832)
Q Consensus 813 ~~GsL~~~l~~ 823 (832)
++|+|.+++..
T Consensus 114 ~g~~L~~~l~~ 124 (286)
T 3uqc_A 114 RGGSLQEVADT 124 (286)
T ss_dssp CEEEHHHHHTT
T ss_pred CCCCHHHHHhc
Confidence 99999999864
|
| >3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.9e-11 Score=130.19 Aligned_cols=92 Identities=16% Similarity=0.199 Sum_probs=77.9
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|+||.||+|+. .+|+.||+|++.... ....+.+.+|++++++++|||||++++++...+. .++|||||+
T Consensus 16 ~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~--~~lv~E~~~ 93 (444)
T 3soa_A 16 FEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGH--HYLIFDLVT 93 (444)
T ss_dssp EEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSE--EEEEECCCB
T ss_pred EEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCE--EEEEEEeCC
Confidence 67899999999999987 489999999986432 2345679999999999999999999999987776 999999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
+|+|.+++..++.+++.
T Consensus 94 gg~L~~~i~~~~~~~e~ 110 (444)
T 3soa_A 94 GGELFEDIVAREYYSEA 110 (444)
T ss_dssp CCBHHHHHHHCSCCCHH
T ss_pred CCCHHHHHHHcCCCCHH
Confidence 99999999888776653
|
| >1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-10 Score=129.87 Aligned_cols=85 Identities=26% Similarity=0.458 Sum_probs=74.0
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
.+.||+|+||.||+|... |+.||||+++... ..+.|.+|++++.+++|||||+++++|...+. ..++|||||++|+
T Consensus 198 ~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~-~~~iv~e~~~~g~ 273 (450)
T 1k9a_A 198 LQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKG-GLYIVTEYMAKGS 273 (450)
T ss_dssp EEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTS-CEEEEEECCTTCB
T ss_pred EeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCC-ceEEEEEecCCCc
Confidence 578999999999999985 7899999997543 34679999999999999999999999886552 2899999999999
Q ss_pred HHHHHhcCC
Q 003307 817 LAVYLQGKG 825 (832)
Q Consensus 817 L~~~l~~~~ 825 (832)
|.++++..+
T Consensus 274 L~~~l~~~~ 282 (450)
T 1k9a_A 274 LVDYLRSRG 282 (450)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 999998654
|
| >3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.8e-11 Score=126.32 Aligned_cols=92 Identities=21% Similarity=0.285 Sum_probs=78.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC---ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG---IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
..+||+|+||+||+|+.. +|+.||||+++.. .....+.+.+|.+++..+ +|||||++++++...+. .++||||
T Consensus 28 ~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~--~~lv~E~ 105 (353)
T 3txo_A 28 IRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDR--LFFVMEF 105 (353)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSE--EEEEEEC
T ss_pred EEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCE--EEEEEeC
Confidence 678999999999999974 7999999998643 122345688999999988 79999999999988777 9999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
|++|+|.++++..+.+++.
T Consensus 106 ~~gg~L~~~l~~~~~~~~~ 124 (353)
T 3txo_A 106 VNGGDLMFHIQKSRRFDEA 124 (353)
T ss_dssp CCSCBHHHHHHHHSSCCHH
T ss_pred CCCCcHHHHHHHcCCCCHH
Confidence 9999999999887766653
|
| >1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-10 Score=124.58 Aligned_cols=86 Identities=26% Similarity=0.393 Sum_probs=74.9
Q ss_pred cCeeeeccCceEEEEEEC------CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
...||+|+||.||+|+.. +++.||||+++.. .....+.|.+|++++.+++||||++++++|...+. .++||
T Consensus 52 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~ 129 (343)
T 1luf_A 52 VRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKP--MCLLF 129 (343)
T ss_dssp EEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS--CEEEE
T ss_pred eeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCCc--eEEEE
Confidence 568999999999999973 3488999999654 33345779999999999999999999999988777 99999
Q ss_pred ecCCCCCHHHHHhcC
Q 003307 810 NYINAQSLAVYLQGK 824 (832)
Q Consensus 810 e~~~~GsL~~~l~~~ 824 (832)
||+++|+|.++++..
T Consensus 130 e~~~~~~L~~~l~~~ 144 (343)
T 1luf_A 130 EYMAYGDLNEFLRSM 144 (343)
T ss_dssp ECCTTCBHHHHHHHT
T ss_pred ecCCCCcHHHHHHHh
Confidence 999999999999864
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-10 Score=124.38 Aligned_cols=91 Identities=25% Similarity=0.276 Sum_probs=74.6
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC--ceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE--HEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~--~~~~lv~e~~~~ 814 (832)
...||+|+||.||+|+.. |+.||||++..... ....+.+|+.++.+++|||||++++++..... ...++|||||++
T Consensus 29 ~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv~e~~~~ 106 (322)
T 3soc_A 29 LEVKARGRFGCVWKAQLL-NEYVAVKIFPIQDK-QSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEK 106 (322)
T ss_dssp EEEEECSTTCEEEEEEET-TEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTT
T ss_pred hheecccCceEEEEEEEC-CCEEEEEEeecCch-HHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEEEecCCC
Confidence 678999999999999985 79999999964332 34556779999999999999999999986542 236999999999
Q ss_pred CCHHHHHhcCCCcccc
Q 003307 815 QSLAVYLQGKGLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~~~l~w~ 830 (832)
|+|.++++.+. ++|.
T Consensus 107 g~L~~~l~~~~-~~~~ 121 (322)
T 3soc_A 107 GSLSDFLKANV-VSWN 121 (322)
T ss_dssp CBHHHHHHHCC-BCHH
T ss_pred CCHHHHHHhcC-CCHH
Confidence 99999997643 5553
|
| >3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ... | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-10 Score=126.28 Aligned_cols=91 Identities=20% Similarity=0.303 Sum_probs=79.7
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||.||+|+.. +|..||+|++... .....+.+.+|++++.+++||||+++++++...+. .++|||||++
T Consensus 38 ~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~~ 115 (360)
T 3eqc_A 38 ISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGE--ISICMEHMDG 115 (360)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTE--EEEEECCCTT
T ss_pred eeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCE--EEEEEECCCC
Confidence 568999999999999985 8999999998654 33445779999999999999999999999988776 9999999999
Q ss_pred CCHHHHHhcCCCccc
Q 003307 815 QSLAVYLQGKGLVLW 829 (832)
Q Consensus 815 GsL~~~l~~~~~l~w 829 (832)
|+|.++++..+.+++
T Consensus 116 ~~L~~~l~~~~~~~~ 130 (360)
T 3eqc_A 116 GSLDQVLKKAGRIPE 130 (360)
T ss_dssp CBHHHHHHHHSSCCH
T ss_pred CCHHHHHHHcCCCCH
Confidence 999999987766665
|
| >1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=8.2e-11 Score=126.43 Aligned_cols=92 Identities=16% Similarity=0.271 Sum_probs=77.7
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
..+||+|+||.||+|+.. +|+.||||+++... ....+.+..|.+++.++ +|||||++++++.+.+. .++||||
T Consensus 22 ~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~--~~lv~E~ 99 (345)
T 1xjd_A 22 HKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKEN--LFFVMEY 99 (345)
T ss_dssp EEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSE--EEEEEEC
T ss_pred EEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCE--EEEEEeC
Confidence 678999999999999984 79999999996431 12345678899999876 99999999999988776 9999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
|++|+|.+++...+.+++.
T Consensus 100 ~~gg~L~~~l~~~~~~~~~ 118 (345)
T 1xjd_A 100 LNGGDLMYHIQSCHKFDLS 118 (345)
T ss_dssp CTTCBHHHHHHHHSSCCHH
T ss_pred CCCCcHHHHHHHcCCCCHH
Confidence 9999999999876666653
|
| >1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-10 Score=125.47 Aligned_cols=91 Identities=19% Similarity=0.214 Sum_probs=78.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+.. +|+.||||+++... ....+.+.+|++++.+++|||||++++++.+.+. .++||||+
T Consensus 46 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~e~~ 123 (350)
T 1rdq_E 46 IKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSN--LYMVMEYV 123 (350)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE--EEEEEECC
T ss_pred EEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCE--EEEEEcCC
Confidence 578999999999999974 79999999985432 1234678999999999999999999999988776 99999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.++++..+.+++
T Consensus 124 ~gg~L~~~l~~~~~~~~ 140 (350)
T 1rdq_E 124 AGGEMFSHLRRIGRFSE 140 (350)
T ss_dssp TTCBHHHHHHHHCCCCH
T ss_pred CCCcHHHHHHHcCCCCH
Confidence 99999999987666655
|
| >2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-10 Score=121.51 Aligned_cols=86 Identities=20% Similarity=0.282 Sum_probs=74.9
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
..+||+|+||.||+|+. .+|+.||||.+........+.+.+|++++.+++||||+++++++...+. .++||||+++|
T Consensus 27 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~~~ 104 (295)
T 2clq_A 27 RVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGF--IKIFMEQVPGG 104 (295)
T ss_dssp BCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTE--EEEEEECCSEE
T ss_pred cEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCc--EEEEEEeCCCC
Confidence 45899999999999997 5789999999976554456789999999999999999999999987776 99999999999
Q ss_pred CHHHHHhcC
Q 003307 816 SLAVYLQGK 824 (832)
Q Consensus 816 sL~~~l~~~ 824 (832)
+|.++++..
T Consensus 105 ~L~~~l~~~ 113 (295)
T 2clq_A 105 SLSALLRSK 113 (295)
T ss_dssp EHHHHHHHT
T ss_pred CHHHHHHhh
Confidence 999999865
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=1e-11 Score=134.62 Aligned_cols=133 Identities=23% Similarity=0.238 Sum_probs=65.2
Q ss_pred cccEEEcCCCcCCCCCcccc-cCCCCCCEEEccCCcCCCCccccc-----CCCCCCCEEEccCCccccc----CcccccC
Q 003307 355 YVEDIHLSSNFLTGMVPNQT-SQFLRLTSFKVSNNSLEGDLPAVL-----GTYPELKVIDLSLNHLNGF----LLPSFFT 424 (832)
Q Consensus 355 ~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~----~~~~~~~ 424 (832)
+|+.|+|++|.|+......+ ..+.+|+.|+|++|.|+......+ ...++|+.|+|++|.|+.. ++..+..
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~ 181 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG 181 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence 46666666666543222222 223456666666666654332222 2345666666666666542 2223345
Q ss_pred CCCCCeEeccCCcccccC----CcccccCCCCCcccCcccccEEEccCCcCccc----CChhhhcCCCCCEEeCcCCcCc
Q 003307 425 STKLTDLNLSGNNFSGPL----PLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGR----LLPGISKFHNLVYLNLSNNKFE 496 (832)
Q Consensus 425 l~~L~~L~Ls~N~l~~~~----p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 496 (832)
+++|++|+|++|.|+..- +..+... .+|+.|||++|.|++. +...+...++|+.|||++|.|+
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~---------~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRN---------RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGC---------SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcC---------CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 566666666666655311 1111111 1256666666666542 2223334455666666666554
|
| >3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2e-10 Score=118.78 Aligned_cols=90 Identities=23% Similarity=0.397 Sum_probs=78.2
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
.+.||+|+||.||+|+..++..||||++..... ..+++.+|++++.+++||||+++++++...+. .++||||+++|+
T Consensus 13 ~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~~~ 89 (267)
T 3t9t_A 13 VQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAP--ICLVTEFMEHGC 89 (267)
T ss_dssp EEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS--CEEEECCCTTCB
T ss_pred eeEecCCCceeEEEEEecCCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCC--eEEEEeCCCCCc
Confidence 578999999999999988888999999965432 34679999999999999999999999988777 999999999999
Q ss_pred HHHHHhcC-CCccc
Q 003307 817 LAVYLQGK-GLVLW 829 (832)
Q Consensus 817 L~~~l~~~-~~l~w 829 (832)
|.++++.. +.++|
T Consensus 90 L~~~~~~~~~~~~~ 103 (267)
T 3t9t_A 90 LSDYLRTQRGLFAA 103 (267)
T ss_dssp HHHHHHHTTTCCCH
T ss_pred HHHHHhhCcccCCH
Confidence 99999865 34554
|
| >2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=9.6e-11 Score=128.87 Aligned_cols=91 Identities=18% Similarity=0.159 Sum_probs=76.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh---hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA---KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.++||+|+||+||+|+.. +|+.||||+++.... ...+.+.+|.+++.+++|||||++++++.+.+. .++|||||
T Consensus 66 ~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~--~~lVmE~~ 143 (412)
T 2vd5_A 66 LKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENY--LYLVMEYY 143 (412)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSSE--EEEEECCC
T ss_pred EEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCE--EEEEEcCC
Confidence 578999999999999984 899999999954221 122348899999999999999999999998776 99999999
Q ss_pred CCCCHHHHHhcCC-Cccc
Q 003307 813 NAQSLAVYLQGKG-LVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~-~l~w 829 (832)
++|+|.++++..+ .+++
T Consensus 144 ~gg~L~~~l~~~~~~l~~ 161 (412)
T 2vd5_A 144 VGGDLLTLLSKFGERIPA 161 (412)
T ss_dssp CSCBHHHHHHHHSSCCCH
T ss_pred CCCcHHHHHHhcCCCCCH
Confidence 9999999998643 5554
|
| >2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-10 Score=121.74 Aligned_cols=91 Identities=18% Similarity=0.330 Sum_probs=76.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+.. +|+.||+|.+........+.|.+|++++.+++||||+++++++...+. .++||||+++|
T Consensus 24 ~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~~ 101 (302)
T 2j7t_A 24 VGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGK--LWIMIEFCPGG 101 (302)
T ss_dssp EEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-C--EEEEEECCTTE
T ss_pred cceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCe--EEEEEEeCCCC
Confidence 567999999999999985 799999999865544556789999999999999999999999998777 99999999999
Q ss_pred CHHHHHhc-CCCccc
Q 003307 816 SLAVYLQG-KGLVLW 829 (832)
Q Consensus 816 sL~~~l~~-~~~l~w 829 (832)
+|.+++.. .+.+++
T Consensus 102 ~l~~~~~~~~~~~~~ 116 (302)
T 2j7t_A 102 AVDAIMLELDRGLTE 116 (302)
T ss_dssp EHHHHHHHHTSCCCH
T ss_pred cHHHHHHhhccCCCH
Confidence 99999875 344554
|
| >3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.4e-10 Score=125.48 Aligned_cols=91 Identities=18% Similarity=0.189 Sum_probs=78.3
Q ss_pred cCeeeec--cCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRS--CHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G--~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
...||+| +||.||+|+.. +|+.||||+++.. .....+.+.+|++++++++|||||++++++...+. .++||||
T Consensus 30 ~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~--~~lv~e~ 107 (389)
T 3gni_B 30 LTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNE--LWVVTSF 107 (389)
T ss_dssp EEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTE--EEEEEEC
T ss_pred EecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCE--EEEEEEc
Confidence 6789999 99999999985 8999999998543 23345678899999999999999999999998776 9999999
Q ss_pred CCCCCHHHHHhcC--CCccc
Q 003307 812 INAQSLAVYLQGK--GLVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~--~~l~w 829 (832)
|++|+|.+++... ..+++
T Consensus 108 ~~~~~L~~~l~~~~~~~~~~ 127 (389)
T 3gni_B 108 MAYGSAKDLICTHFMDGMNE 127 (389)
T ss_dssp CTTCBHHHHHHHTCTTCCCH
T ss_pred cCCCCHHHHHhhhcccCCCH
Confidence 9999999999865 44554
|
| >3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.2e-10 Score=119.71 Aligned_cols=91 Identities=15% Similarity=0.240 Sum_probs=78.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|+||.||+|+.. +|+.||||++... .....+.+.+|++++.+++||||+++++++...+. .++||||++
T Consensus 11 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~~v~e~~~ 88 (284)
T 3kk8_A 11 KEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESF--HYLVFDLVT 88 (284)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEECCCC
T ss_pred hhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCE--EEEEEecCC
Confidence 678999999999999974 7999999998543 33345678999999999999999999999987776 899999999
Q ss_pred CCCHHHHHhcCCCccc
Q 003307 814 AQSLAVYLQGKGLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w 829 (832)
+|+|.+++..++.+++
T Consensus 89 ~~~l~~~~~~~~~~~~ 104 (284)
T 3kk8_A 89 GGELFEDIVAREFYSE 104 (284)
T ss_dssp SCBHHHHHHHHSSCCH
T ss_pred CCCHHHHHHhcCCCCH
Confidence 9999999887766655
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-08 Score=110.33 Aligned_cols=77 Identities=9% Similarity=0.047 Sum_probs=33.6
Q ss_pred CCEEECCCCCCCccCcccccCCCCCCEEEccccc---ccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEE
Q 003307 115 LEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNS---FEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVD 191 (832)
Q Consensus 115 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~---l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~ 191 (832)
|+.+.+..+ ++.+...+|.++++|+.+.+..|. ++.+...+|.++.+|+.+.+..+ ++.+....|..+.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 444444332 343444444445555555444432 33333444444555544444332 2323333444444444444
Q ss_pred Cc
Q 003307 192 LS 193 (832)
Q Consensus 192 Ls 193 (832)
+.
T Consensus 144 lp 145 (394)
T 4gt6_A 144 IP 145 (394)
T ss_dssp CC
T ss_pred cc
Confidence 43
|
| >3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-10 Score=125.47 Aligned_cols=85 Identities=20% Similarity=0.307 Sum_probs=73.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC-----hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI-----AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-----~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.+.||+|+||.||+|+.. +|+.||||+++... ....+.+.+|++++.+++|||||+++++|...+. .++|||
T Consensus 29 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~--~~lv~e 106 (351)
T 3c0i_A 29 CEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGM--LYMVFE 106 (351)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTE--EEEEEE
T ss_pred eeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCE--EEEEEe
Confidence 578999999999999974 89999999984321 1235779999999999999999999999988776 999999
Q ss_pred cCCCCCHHHHHhc
Q 003307 811 YINAQSLAVYLQG 823 (832)
Q Consensus 811 ~~~~GsL~~~l~~ 823 (832)
||++|+|.+++..
T Consensus 107 ~~~g~~L~~~l~~ 119 (351)
T 3c0i_A 107 FMDGADLCFEIVK 119 (351)
T ss_dssp CCSSCBHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 9999999988864
|
| >2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.7e-10 Score=122.28 Aligned_cols=92 Identities=11% Similarity=0.200 Sum_probs=79.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+++.. +++.||+|++... .....+.|.+|++++.+++||||+++++++...+. .++|||||
T Consensus 46 ~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~ 123 (335)
T 2owb_A 46 GRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDF--VFVVLELC 123 (335)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE--EEEEECCC
T ss_pred EEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCe--EEEEEecC
Confidence 678999999999999985 7899999998543 23345779999999999999999999999998776 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.+++...+.++|.
T Consensus 124 ~~~~L~~~~~~~~~l~~~ 141 (335)
T 2owb_A 124 RRRSLLELHKRRKALTEP 141 (335)
T ss_dssp TTCBHHHHHHHHCSCCHH
T ss_pred CCCCHHHHHhccCCCCHH
Confidence 999999999876666653
|
| >1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-10 Score=132.19 Aligned_cols=90 Identities=28% Similarity=0.370 Sum_probs=77.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|+||.||+|+.. ++..||||.++.... ..++|.+|+++|++++|||||+++++|...+. .++|||||++|
T Consensus 225 ~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~--~~lv~E~~~~g 301 (495)
T 1opk_A 225 KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP--FYIITEFMTYG 301 (495)
T ss_dssp EEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS--CEEEEECCTTC
T ss_pred eeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc-chHHHHHHHHHHHhcCCCCEeeEEEEEecCCc--EEEEEEccCCC
Confidence 678999999999999985 589999999965432 35789999999999999999999999988777 99999999999
Q ss_pred CHHHHHhcC--CCccc
Q 003307 816 SLAVYLQGK--GLVLW 829 (832)
Q Consensus 816 sL~~~l~~~--~~l~w 829 (832)
+|.++++.. ..++|
T Consensus 302 ~L~~~l~~~~~~~~~~ 317 (495)
T 1opk_A 302 NLLDYLRECNRQEVSA 317 (495)
T ss_dssp BHHHHHHHSCTTTSCH
T ss_pred CHHHHHHhcCcCCCCH
Confidence 999999853 33554
|
| >4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-10 Score=127.79 Aligned_cols=89 Identities=18% Similarity=0.317 Sum_probs=75.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.++||+|+||.||+|+.. +|+.||||+++... ....+.+.+|++++++++|||||++++++...+....++|||||++
T Consensus 14 ~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~e~~~~ 93 (396)
T 4eut_A 14 SDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPC 93 (396)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEECCCTT
T ss_pred EEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEEecCCC
Confidence 678999999999999985 79999999996432 2345778899999999999999999999987664348999999999
Q ss_pred CCHHHHHhcCC
Q 003307 815 QSLAVYLQGKG 825 (832)
Q Consensus 815 GsL~~~l~~~~ 825 (832)
|+|.++++...
T Consensus 94 g~L~~~l~~~~ 104 (396)
T 4eut_A 94 GSLYTVLEEPS 104 (396)
T ss_dssp EEHHHHTTSGG
T ss_pred CCHHHHHHhhh
Confidence 99999997643
|
| >3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-10 Score=120.36 Aligned_cols=85 Identities=13% Similarity=0.219 Sum_probs=74.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|+. .+|..||||++.... ....+.+.+|++++.+++||||++++++|...+. .++||||+++
T Consensus 27 ~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~e~~~~ 104 (285)
T 3is5_A 27 KRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHN--MYIVMETCEG 104 (285)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE--EEEEECCCSC
T ss_pred cceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCe--EEEEEEeCCC
Confidence 67899999999999997 479999999985432 2345789999999999999999999999987776 9999999999
Q ss_pred CCHHHHHhc
Q 003307 815 QSLAVYLQG 823 (832)
Q Consensus 815 GsL~~~l~~ 823 (832)
|+|.+++..
T Consensus 105 ~~L~~~l~~ 113 (285)
T 3is5_A 105 GELLERIVS 113 (285)
T ss_dssp CBHHHHHHH
T ss_pred CcHHHHHHh
Confidence 999999854
|
| >1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B | Back alignment and structure |
|---|
Probab=99.09 E-value=1.7e-10 Score=129.28 Aligned_cols=84 Identities=21% Similarity=0.384 Sum_probs=74.1
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
.+.||+|+||.||+|...++..||||+++... ...+.|.+|++++++++|||||++++++. .+. .++|||||++|+
T Consensus 193 ~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~--~~lv~e~~~~g~ 268 (454)
T 1qcf_A 193 EKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEP--IYIITEFMAKGS 268 (454)
T ss_dssp EEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSS--CEEEECCCTTCB
T ss_pred EEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCc--cEEEEeecCCCc
Confidence 67899999999999999888899999997543 24678999999999999999999999986 344 899999999999
Q ss_pred HHHHHhcC
Q 003307 817 LAVYLQGK 824 (832)
Q Consensus 817 L~~~l~~~ 824 (832)
|.++++..
T Consensus 269 L~~~l~~~ 276 (454)
T 1qcf_A 269 LLDFLKSD 276 (454)
T ss_dssp HHHHHHSH
T ss_pred HHHHHHhc
Confidence 99999853
|
| >3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=7.3e-11 Score=129.73 Aligned_cols=86 Identities=17% Similarity=0.195 Sum_probs=73.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh---hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA---KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||+||+|+.. +|+.||||+++.... ...+.+.+|++++..++|||||+++++|.+.+. .++|||||
T Consensus 74 ~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~--~~lV~E~~ 151 (410)
T 3v8s_A 74 VKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRY--LYMVMEYM 151 (410)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEECCC
T ss_pred EEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECCE--EEEEEeCC
Confidence 578999999999999985 799999999854211 122348899999999999999999999998776 99999999
Q ss_pred CCCCHHHHHhcC
Q 003307 813 NAQSLAVYLQGK 824 (832)
Q Consensus 813 ~~GsL~~~l~~~ 824 (832)
++|+|.++++..
T Consensus 152 ~gg~L~~~l~~~ 163 (410)
T 3v8s_A 152 PGGDLVNLMSNY 163 (410)
T ss_dssp TTEEHHHHHHHC
T ss_pred CCCcHHHHHHcC
Confidence 999999999764
|
| >2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-10 Score=130.68 Aligned_cols=92 Identities=20% Similarity=0.320 Sum_probs=79.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh---hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA---KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+.. +|+.||||++..... ...+.+.+|+++++.++||||+++++++...+. .++|||||
T Consensus 21 ~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~--~~lv~E~~ 98 (476)
T 2y94_A 21 GDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSD--IFMVMEYV 98 (476)
T ss_dssp EEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE--EEEEEECC
T ss_pred EEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE--EEEEEeCC
Confidence 678999999999999985 899999999854321 234678999999999999999999999998776 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.+++...+.+++.
T Consensus 99 ~gg~L~~~l~~~~~l~~~ 116 (476)
T 2y94_A 99 SGGELFDYICKNGRLDEK 116 (476)
T ss_dssp SSEEHHHHTTSSSSCCHH
T ss_pred CCCcHHHHHHhcCCCCHH
Confidence 999999999887777653
|
| >3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} | Back alignment and structure |
|---|
Probab=99.09 E-value=2e-10 Score=130.57 Aligned_cols=92 Identities=16% Similarity=0.200 Sum_probs=76.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh-------------hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA-------------KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE 802 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~-------------~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~ 802 (832)
...||+|+||.||+|+.. +|+.||||++..... ...+.+.+|++++.+++|||||+++++|.....
T Consensus 41 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~ 120 (504)
T 3q5i_A 41 VRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKY 120 (504)
T ss_dssp EEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE
T ss_pred EeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCE
Confidence 578999999999999974 789999999854321 235679999999999999999999999998776
Q ss_pred ceEEEEEecCCCCCHHHHHhcCCCcccc
Q 003307 803 HEKLVISNYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 803 ~~~~lv~e~~~~GsL~~~l~~~~~l~w~ 830 (832)
.++|||||++|+|.+++...+.++|.
T Consensus 121 --~~lv~e~~~gg~L~~~l~~~~~~~~~ 146 (504)
T 3q5i_A 121 --FYLVTEFYEGGELFEQIINRHKFDEC 146 (504)
T ss_dssp --EEEEEECCTTCBHHHHHHHHSCCCHH
T ss_pred --EEEEEecCCCCcHHHHHHHcCCCCHH
Confidence 99999999999999999877777664
|
| >4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.09 E-value=9.8e-11 Score=127.99 Aligned_cols=92 Identities=18% Similarity=0.268 Sum_probs=76.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh---hhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA---KGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
..+||+|+||+||+|+.. +|+.||||+++.... ...+.+.+|..++.++ +|||||++++++...+. .++||||
T Consensus 57 ~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~--~~lV~E~ 134 (396)
T 4dc2_A 57 LRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESR--LFFVIEY 134 (396)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSE--EEEEEEC
T ss_pred EEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCE--EEEEEEc
Confidence 678999999999999985 789999999964321 2234578899999876 89999999999988776 9999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
|++|+|.++++..+.+++.
T Consensus 135 ~~gg~L~~~l~~~~~l~~~ 153 (396)
T 4dc2_A 135 VNGGDLMFHMQRQRKLPEE 153 (396)
T ss_dssp CTTCBHHHHHHHHSSCCHH
T ss_pred CCCCcHHHHHHHcCCCCHH
Confidence 9999999999887777654
|
| >3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=6.4e-11 Score=125.68 Aligned_cols=94 Identities=18% Similarity=0.205 Sum_probs=78.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCc--eEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEH--EKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~--~~~lv~e 810 (832)
.+.||+|+||.||+|+. .+|+.||||+++... ......|.+|++++.+++|||||++++++...... ..++|||
T Consensus 17 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~lv~e 96 (311)
T 3ork_A 17 GEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVME 96 (311)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcccEEEEe
Confidence 67899999999999997 589999999996532 23346789999999999999999999998755431 2499999
Q ss_pred cCCCCCHHHHHhcCCCcccc
Q 003307 811 YINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~~l~w~ 830 (832)
|+++|+|.++++..+.++|.
T Consensus 97 ~~~g~~L~~~l~~~~~~~~~ 116 (311)
T 3ork_A 97 YVDGVTLRDIVHTEGPMTPK 116 (311)
T ss_dssp CCCEEEHHHHHHHHCSCCHH
T ss_pred cCCCCCHHHHHHhcCCCCHH
Confidence 99999999999877766653
|
| >2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.3e-10 Score=121.43 Aligned_cols=87 Identities=25% Similarity=0.364 Sum_probs=75.4
Q ss_pred cCeeeeccCceEEEEEE------CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL------DSGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
.+.||+|+||.||+|+. .+|..||||+++.. .....+.+.+|++++.+++|||||++++++...+. .++||
T Consensus 28 ~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~ 105 (314)
T 2ivs_A 28 GKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGP--LLLIV 105 (314)
T ss_dssp EEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS--CEEEE
T ss_pred eeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCc--eEEEE
Confidence 67899999999999985 24588999999654 33445779999999999999999999999987777 99999
Q ss_pred ecCCCCCHHHHHhcCC
Q 003307 810 NYINAQSLAVYLQGKG 825 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~ 825 (832)
||+++|+|.++++..+
T Consensus 106 e~~~~~~L~~~l~~~~ 121 (314)
T 2ivs_A 106 EYAKYGSLRGFLRESR 121 (314)
T ss_dssp ECCTTCBHHHHHHHTT
T ss_pred eecCCCCHHHHHHHHh
Confidence 9999999999998654
|
| >3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ... | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-10 Score=120.23 Aligned_cols=91 Identities=26% Similarity=0.350 Sum_probs=77.7
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+.. ++..||||++.... ....+.+.+|++++++++||||++++++|...+. .++||||+
T Consensus 14 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~ 91 (279)
T 3fdn_A 14 GRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATR--VYLILEYA 91 (279)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE--EEEEECCC
T ss_pred eeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCE--EEEEEecC
Confidence 678999999999999974 78899999985422 1235678999999999999999999999987776 99999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.+++...+.+++
T Consensus 92 ~~~~l~~~l~~~~~~~~ 108 (279)
T 3fdn_A 92 PLGTVYRELQKLSKFDE 108 (279)
T ss_dssp TTEEHHHHHHHHSSCCH
T ss_pred CCCcHHHHHHhcCCCCH
Confidence 99999999987666654
|
| >4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.1e-10 Score=133.58 Aligned_cols=91 Identities=21% Similarity=0.237 Sum_probs=77.1
Q ss_pred cCeeeeccCceEEEEEE---CCCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATL---DSGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~---~~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
++.||+|+||.||+|.+ ..++.||||+++... ....++|.+|++++.+++|||||+++++|.. +. .++||||
T Consensus 374 ~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~--~~lv~E~ 450 (635)
T 4fl3_A 374 DKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ES--WMLVMEM 450 (635)
T ss_dssp EEEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SS--EEEEEEC
T ss_pred CCEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CC--EEEEEEc
Confidence 35799999999999975 356889999996532 2346789999999999999999999999964 34 7999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
|++|+|.++++..+.++|.
T Consensus 451 ~~~g~L~~~l~~~~~l~~~ 469 (635)
T 4fl3_A 451 AELGPLNKYLQQNRHVKDK 469 (635)
T ss_dssp CTTEEHHHHHHHCTTCCHH
T ss_pred cCCCCHHHHHhhCCCCCHH
Confidence 9999999999988877764
|
| >2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.4e-10 Score=121.60 Aligned_cols=93 Identities=17% Similarity=0.239 Sum_probs=76.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECC--CCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGP--KEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~--~~~~~~lv~e~~~ 813 (832)
.+.||+|+||.||+|+. .+|+.||||++........+.+.+|++++.+++||||+++++++... .....++|+||++
T Consensus 34 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~ 113 (317)
T 2buj_A 34 IQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFK 113 (317)
T ss_dssp EEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEEEEECCT
T ss_pred EEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEEEEEeCC
Confidence 67899999999999997 58999999998665555677899999999999999999999998732 2224899999999
Q ss_pred CCCHHHHHhc----CCCccc
Q 003307 814 AQSLAVYLQG----KGLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~----~~~l~w 829 (832)
+|+|.++++. ...++|
T Consensus 114 ~~~L~~~l~~~~~~~~~~~~ 133 (317)
T 2buj_A 114 RGTLWNEIERLKDKGNFLTE 133 (317)
T ss_dssp TCBHHHHHHHHHTTTCCCCH
T ss_pred CCcHHHHHHHHHhcCCCCCH
Confidence 9999999975 344554
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.8e-08 Score=110.49 Aligned_cols=157 Identities=10% Similarity=0.072 Sum_probs=111.5
Q ss_pred cccccCCC-CCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCC---CCccCcccccCCCCCCEEEcccccccccCCCCC
Q 003307 83 FPTIIGLK-MLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNL---FHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGF 157 (832)
Q Consensus 83 ~~~~~~l~-~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~---l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 157 (832)
...|.+++ .|+.+.+..+ ++.... .|.+|++|+.+.+..|. ++.+...+|.++.+|+.+.+..+ ++.+...+|
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 34566774 5999999764 665555 89999999999998764 77777789999999999988765 555777889
Q ss_pred CCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCC
Q 003307 158 GGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYF 237 (832)
Q Consensus 158 ~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l 237 (832)
.++.+|+.+.+..+ +..+....|..+.+|+.+.+..+ ++. +... .+. ..+|+.+.+..+-.. . ....+..+
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~-I~~~--aF~-~~~l~~i~ip~~~~~-i--~~~af~~c 204 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTA-IEER--AFT-GTALTQIHIPAKVTR-I--GTNAFSEC 204 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCE-ECTT--TTT-TCCCSEEEECTTCCE-E--CTTTTTTC
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce-eeE-eccc--ccc-ccceeEEEECCcccc-c--ccchhhhc
Confidence 99999999999754 45566678899999999999765 331 2211 122 256777777655432 1 12236677
Q ss_pred CCcCEEEccCCcc
Q 003307 238 DNLEVFDASNNHL 250 (832)
Q Consensus 238 ~~L~~L~Ls~N~l 250 (832)
.+++......+..
T Consensus 205 ~~l~~~~~~~~~~ 217 (394)
T 4gt6_A 205 FALSTITSDSESY 217 (394)
T ss_dssp TTCCEEEECCSSS
T ss_pred cccceeccccccc
Confidence 7777776665544
|
| >4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.5e-10 Score=121.00 Aligned_cols=92 Identities=26% Similarity=0.320 Sum_probs=78.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++.+++||||+++++++...+. .++|||||+
T Consensus 8 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~ 85 (311)
T 4agu_A 8 IGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRR--LHLVFEYCD 85 (311)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTE--EEEEEECCS
T ss_pred eeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCe--EEEEEEeCC
Confidence 568999999999999985 79999999885432 2335678999999999999999999999988776 999999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
+|+|.++++..+.+++.
T Consensus 86 ~~~l~~~~~~~~~~~~~ 102 (311)
T 4agu_A 86 HTVLHELDRYQRGVPEH 102 (311)
T ss_dssp EEHHHHHHHTSSCCCHH
T ss_pred CchHHHHHhhhcCCCHH
Confidence 99999998877766653
|
| >3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.9e-10 Score=128.66 Aligned_cols=92 Identities=18% Similarity=0.258 Sum_probs=80.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++++++|||||+++++|...+. .++|+|||
T Consensus 31 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~--~~lv~e~~ 108 (484)
T 3nyv_A 31 QRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGY--FYLVGEVY 108 (484)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE--EEEEECCC
T ss_pred eeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCE--EEEEEecC
Confidence 578999999999999985 89999999985331 2346789999999999999999999999998776 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.+++..++.+++.
T Consensus 109 ~~~~L~~~~~~~~~~~~~ 126 (484)
T 3nyv_A 109 TGGELFDEIISRKRFSEV 126 (484)
T ss_dssp CSCBHHHHHHTCSCCBHH
T ss_pred CCCCHHHHHHhcCCCCHH
Confidence 999999999888777653
|
| >1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... | Back alignment and structure |
|---|
Probab=99.07 E-value=2.1e-10 Score=128.38 Aligned_cols=83 Identities=23% Similarity=0.488 Sum_probs=73.2
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
...||+|+||.||+|...++..||||+++.... ..++|.+|++++.+++|||||+++++|.. +. .++|||||++|+
T Consensus 189 ~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~--~~iv~e~~~~gs 264 (452)
T 1fmk_A 189 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EP--IYIVTEYMSKGS 264 (452)
T ss_dssp EEEEEECSSCEEEEEEETTTEEEEEEECCTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SS--CEEEECCCTTCB
T ss_pred eeeecCCCCeEEEEEEECCCceEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEcC-Cc--eEEEehhhcCCC
Confidence 668999999999999998778899999975432 35789999999999999999999999875 44 799999999999
Q ss_pred HHHHHhc
Q 003307 817 LAVYLQG 823 (832)
Q Consensus 817 L~~~l~~ 823 (832)
|.++++.
T Consensus 265 L~~~l~~ 271 (452)
T 1fmk_A 265 LLDFLKG 271 (452)
T ss_dssp HHHHHSH
T ss_pred HHHHHHh
Confidence 9999974
|
| >2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.6e-10 Score=121.78 Aligned_cols=93 Identities=24% Similarity=0.445 Sum_probs=77.1
Q ss_pred cCeeeeccCceEEEEEE-----CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATL-----DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|+||.||+|++ .+|+.||||++........+.|.+|++++.+++||||+++++++...+....++||||
T Consensus 46 ~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~ 125 (326)
T 2w1i_A 46 LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEY 125 (326)
T ss_dssp EEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CCEEEECC
T ss_pred eeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceEEEEEC
Confidence 57899999999999984 3789999999976655556789999999999999999999999876553238999999
Q ss_pred CCCCCHHHHHhcCC-Cccc
Q 003307 812 INAQSLAVYLQGKG-LVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~~-~l~w 829 (832)
+++|+|.++++..+ .++|
T Consensus 126 ~~~~~L~~~l~~~~~~~~~ 144 (326)
T 2w1i_A 126 LPYGSLRDYLQKHKERIDH 144 (326)
T ss_dssp CTTCBHHHHHHHSTTSSCH
T ss_pred CCCCCHHHHHHhcccCCCH
Confidence 99999999998653 4554
|
| >1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A | Back alignment and structure |
|---|
Probab=99.07 E-value=3.8e-10 Score=118.31 Aligned_cols=93 Identities=19% Similarity=0.322 Sum_probs=77.1
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECC--CCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGP--KEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~--~~~~~~lv~e~ 811 (832)
...||+|+||.||+|.. .++..||+|.+... .....+.|.+|++++.+++||||++++++|... +....++||||
T Consensus 31 ~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~ 110 (290)
T 1t4h_A 31 DIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTEL 110 (290)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEEC
T ss_pred eeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEEEEEe
Confidence 56799999999999997 47899999998543 334467799999999999999999999998642 22248999999
Q ss_pred CCCCCHHHHHhcCCCccc
Q 003307 812 INAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w 829 (832)
+++|+|.+++...+.+++
T Consensus 111 ~~~~~L~~~l~~~~~~~~ 128 (290)
T 1t4h_A 111 MTSGTLKTYLKRFKVMKI 128 (290)
T ss_dssp CCSCBHHHHHHHHSSCCH
T ss_pred cCCCCHHHHHHHccCCCH
Confidence 999999999987666655
|
| >3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2e-10 Score=130.17 Aligned_cols=91 Identities=14% Similarity=0.184 Sum_probs=74.8
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+.. +|..||||++.... ......+.+|++++++++|||||+++++|..... .++|||||+
T Consensus 42 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~--~~lv~e~~~ 119 (494)
T 3lij_A 42 VKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRN--YYLVMECYK 119 (494)
T ss_dssp EEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSE--EEEEEECCC
T ss_pred eeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCE--EEEEEecCC
Confidence 568999999999999985 89999999986432 2235678999999999999999999999998776 999999999
Q ss_pred CCCHHHHHhcCCCccc
Q 003307 814 AQSLAVYLQGKGLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w 829 (832)
+|+|.+++..+..+++
T Consensus 120 ~g~L~~~~~~~~~~~~ 135 (494)
T 3lij_A 120 GGELFDEIIHRMKFNE 135 (494)
T ss_dssp SCBHHHHHHHHSSCCH
T ss_pred CCcHHHHHHHcCCCCH
Confidence 9999999987766665
|
| >1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.6e-10 Score=120.06 Aligned_cols=91 Identities=20% Similarity=0.246 Sum_probs=77.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---------hhhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---------AKGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEK 805 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---------~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~ 805 (832)
...||+|+||.||+|+.. +|+.||||.++... ....+.+.+|++++.+++ ||||+++++++...+. .
T Consensus 22 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~--~ 99 (298)
T 1phk_A 22 KEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTF--F 99 (298)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSE--E
T ss_pred eeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeeccCCe--E
Confidence 678999999999999984 78999999985432 122456889999999996 9999999999987766 9
Q ss_pred EEEEecCCCCCHHHHHhcCCCccc
Q 003307 806 LVISNYINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 806 ~lv~e~~~~GsL~~~l~~~~~l~w 829 (832)
++||||+++|+|.+++..+..+++
T Consensus 100 ~lv~e~~~~~~L~~~l~~~~~~~~ 123 (298)
T 1phk_A 100 FLVFDLMKKGELFDYLTEKVTLSE 123 (298)
T ss_dssp EEEEECCTTCBHHHHHHHHSSCCH
T ss_pred EEEEeccCCCcHHHHHhccCCCCH
Confidence 999999999999999987666655
|
| >2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... | Back alignment and structure |
|---|
Probab=99.07 E-value=2.9e-10 Score=121.90 Aligned_cols=87 Identities=24% Similarity=0.376 Sum_probs=73.9
Q ss_pred cCeeeeccCceEEEEEE--------CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEE
Q 003307 737 AEVIGRSCHGTLYKATL--------DSGSILAVKRLREG-IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKL 806 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~--------~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~ 806 (832)
...||+|+||.||+|+. .++..||||+++.. .....+.+.+|++++.++ +||||++++++|...+. .+
T Consensus 40 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~--~~ 117 (334)
T 2pvf_A 40 GKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGP--LY 117 (334)
T ss_dssp EEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSC--CE
T ss_pred eeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccCCc--eE
Confidence 67899999999999986 25678999999654 334457799999999999 99999999999987777 99
Q ss_pred EEEecCCCCCHHHHHhcCC
Q 003307 807 VISNYINAQSLAVYLQGKG 825 (832)
Q Consensus 807 lv~e~~~~GsL~~~l~~~~ 825 (832)
+||||+++|+|.++++..+
T Consensus 118 lv~e~~~~~~L~~~l~~~~ 136 (334)
T 2pvf_A 118 VIVEYASKGNLREYLRARR 136 (334)
T ss_dssp EEEECCTTCBHHHHHHTTS
T ss_pred EEEECCCCCcHHHHHHHhc
Confidence 9999999999999998654
|
| >2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.4e-10 Score=121.06 Aligned_cols=92 Identities=23% Similarity=0.324 Sum_probs=79.2
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+.. +|+.||||++.... ....+.|.+|++++.+++||||+++++++...+. .++|+||+
T Consensus 39 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~e~~ 116 (309)
T 2h34_A 39 RRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQ--LYVDMRLI 116 (309)
T ss_dssp EEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTE--EEEEEECC
T ss_pred EEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCe--EEEEEEec
Confidence 678999999999999974 78999999986432 2234679999999999999999999999988776 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.++++..+.++|.
T Consensus 117 ~~~~L~~~l~~~~~~~~~ 134 (309)
T 2h34_A 117 NGVDLAAMLRRQGPLAPP 134 (309)
T ss_dssp CCEEHHHHHHHHCSCCHH
T ss_pred CCCCHHHHHHhcCCCCHH
Confidence 999999999877666653
|
| >3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.9e-10 Score=124.72 Aligned_cols=88 Identities=30% Similarity=0.438 Sum_probs=74.1
Q ss_pred cCeeeeccCceEEEEEE------CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATL------DSGSILAVKRLREG-IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv 808 (832)
...||+|+||.||+|+. .+|+.||||+++.. .....+.|.+|++++.++ +|||||+++++|...+. ..++|
T Consensus 27 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~~~~~~~-~~~iv 105 (359)
T 3vhe_A 27 GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG-PLMVI 105 (359)
T ss_dssp EEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTS-CCEEE
T ss_pred ceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeeeeeecCCC-ceEEE
Confidence 67899999999999983 35689999999654 333456799999999999 89999999999976543 37999
Q ss_pred EecCCCCCHHHHHhcCC
Q 003307 809 SNYINAQSLAVYLQGKG 825 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~ 825 (832)
||||++|+|.++++...
T Consensus 106 ~e~~~~g~L~~~l~~~~ 122 (359)
T 3vhe_A 106 VEFCKFGNLSTYLRSKR 122 (359)
T ss_dssp EECCTTEEHHHHHHTTT
T ss_pred EEecCCCcHHHHHHhcc
Confidence 99999999999998654
|
| >3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.7e-10 Score=125.49 Aligned_cols=86 Identities=20% Similarity=0.325 Sum_probs=74.4
Q ss_pred cCeeeeccCceEEEEEE------CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL------DSGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
...||+|+||.||+|+. .+++.||||+++.. .......|.+|+.++.+++|||||++++++..... .++||
T Consensus 76 ~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~--~~lv~ 153 (367)
T 3l9p_A 76 IRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLP--RFILL 153 (367)
T ss_dssp EEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS--CEEEE
T ss_pred eeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCC--CEEEE
Confidence 56899999999999994 25678999999643 34455679999999999999999999999988777 89999
Q ss_pred ecCCCCCHHHHHhcC
Q 003307 810 NYINAQSLAVYLQGK 824 (832)
Q Consensus 810 e~~~~GsL~~~l~~~ 824 (832)
|||++|+|.++++..
T Consensus 154 e~~~~g~L~~~l~~~ 168 (367)
T 3l9p_A 154 ELMAGGDLKSFLRET 168 (367)
T ss_dssp ECCTTEEHHHHHHHH
T ss_pred EeCCCCCHHHHHHhh
Confidence 999999999999864
|
| >2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.7e-10 Score=118.48 Aligned_cols=91 Identities=21% Similarity=0.331 Sum_probs=78.2
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+.. +|+.||||.+.... ....+.+.+|++++.+++||||+++++++...+. .++||||+
T Consensus 16 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~ 93 (276)
T 2h6d_A 16 GDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTD--FFMVMEYV 93 (276)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE--EEEEEECC
T ss_pred EeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCe--EEEEEecc
Confidence 678999999999999985 89999999985421 1234678999999999999999999999988776 99999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.+++...+.+++
T Consensus 94 ~~~~L~~~l~~~~~~~~ 110 (276)
T 2h6d_A 94 SGGELFDYICKHGRVEE 110 (276)
T ss_dssp CSCBHHHHHHHHCSCCH
T ss_pred CCCcHHHHHhccCCCCH
Confidence 99999999987666654
|
| >3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.4e-10 Score=124.01 Aligned_cols=91 Identities=20% Similarity=0.291 Sum_probs=77.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+. .+|+.||||++.... ....+.+.+|++++..++|||||++++++...+. .++||||+
T Consensus 14 ~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~--~~lv~E~~ 91 (336)
T 3h4j_B 14 RETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTD--IVMVIEYA 91 (336)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSE--EEEEECCC
T ss_pred EEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCE--EEEEEECC
Confidence 67899999999999997 589999999985321 1123578999999999999999999999998776 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
+|+|.+++..++.+++.
T Consensus 92 -~g~l~~~l~~~~~l~~~ 108 (336)
T 3h4j_B 92 -GGELFDYIVEKKRMTED 108 (336)
T ss_dssp -CEEHHHHHHHHCSCCHH
T ss_pred -CCcHHHHHHHcCCCCHH
Confidence 68999999877776653
|
| >2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.5e-10 Score=129.82 Aligned_cols=91 Identities=20% Similarity=0.236 Sum_probs=77.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
..+||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++.+++|||||++++++.+.+. .++|||||
T Consensus 189 ~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~--l~lVmEy~ 266 (576)
T 2acx_A 189 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDA--LCLVLTLM 266 (576)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEECCC
T ss_pred EEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCE--EEEEEEcC
Confidence 568999999999999984 89999999985421 2234668899999999999999999999988776 99999999
Q ss_pred CCCCHHHHHhcCCC--ccc
Q 003307 813 NAQSLAVYLQGKGL--VLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~--l~w 829 (832)
++|+|.++++..+. ++|
T Consensus 267 ~gg~L~~~l~~~~~~~l~e 285 (576)
T 2acx_A 267 NGGDLKFHIYHMGQAGFPE 285 (576)
T ss_dssp CSCBHHHHHHSSSSCCCCH
T ss_pred CCCcHHHHHHhcCCCCCCH
Confidence 99999999986543 554
|
| >2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.3e-10 Score=119.27 Aligned_cols=87 Identities=25% Similarity=0.328 Sum_probs=74.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+.. +|+.||||++... .....+.|.+|++++.+++||||+++++++........++||||++
T Consensus 11 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~ 90 (279)
T 2w5a_A 11 LYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCE 90 (279)
T ss_dssp EEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEEEEECCT
T ss_pred ehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEEEEeCCC
Confidence 578999999999999984 8999999998643 2334567999999999999999999999986543334899999999
Q ss_pred CCCHHHHHhc
Q 003307 814 AQSLAVYLQG 823 (832)
Q Consensus 814 ~GsL~~~l~~ 823 (832)
+|+|.+++..
T Consensus 91 ~~~L~~~l~~ 100 (279)
T 2w5a_A 91 GGDLASVITK 100 (279)
T ss_dssp TEEHHHHHHH
T ss_pred CCCHHHHHHh
Confidence 9999999975
|
| >4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.7e-10 Score=119.14 Aligned_cols=93 Identities=22% Similarity=0.313 Sum_probs=73.7
Q ss_pred cCeeeeccCceEEEEEE-----CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-----DSGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-----~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
...||+|+||.||+|++ .+|+.||||+++.. .....+.+.+|++++.+++||||+++++++...+....++|||
T Consensus 26 ~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e 105 (302)
T 4e5w_A 26 IRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIME 105 (302)
T ss_dssp EEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCEEEEEE
T ss_pred hhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceEEEEEE
Confidence 56899999999999984 47899999998643 2234577999999999999999999999998764333899999
Q ss_pred cCCCCCHHHHHhc-CCCccc
Q 003307 811 YINAQSLAVYLQG-KGLVLW 829 (832)
Q Consensus 811 ~~~~GsL~~~l~~-~~~l~w 829 (832)
|+++|+|.++++. ...+++
T Consensus 106 ~~~~~~L~~~l~~~~~~~~~ 125 (302)
T 4e5w_A 106 FLPSGSLKEYLPKNKNKINL 125 (302)
T ss_dssp CCTTCBHHHHHHHHTTTCCH
T ss_pred eCCCCcHHHHHHhccccCCH
Confidence 9999999999954 344554
|
| >3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.9e-10 Score=119.24 Aligned_cols=92 Identities=17% Similarity=0.312 Sum_probs=76.2
Q ss_pred cCeeeeccCceEEEEEE-----CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-----DSGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-----~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
...||+|+||.||++.+ .+|+.||||+++... ....+.|.+|++++.+++||||+++++++...+....++|||
T Consensus 36 ~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e 115 (318)
T 3lxp_A 36 IRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVME 115 (318)
T ss_dssp EEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEEEEC
T ss_pred hheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEEEEe
Confidence 56899999999999875 268899999996543 344677999999999999999999999998754434899999
Q ss_pred cCCCCCHHHHHhcCCCccc
Q 003307 811 YINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~~l~w 829 (832)
|+++|+|.+++.... ++|
T Consensus 116 ~~~~~~L~~~l~~~~-~~~ 133 (318)
T 3lxp_A 116 YVPLGSLRDYLPRHS-IGL 133 (318)
T ss_dssp CCTTCBHHHHGGGSC-CCH
T ss_pred cccCCcHHHHHhhCC-CCH
Confidence 999999999987654 443
|
| >1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.4e-10 Score=118.35 Aligned_cols=86 Identities=24% Similarity=0.330 Sum_probs=75.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+.. +|+.||||++... ......++.+|+..+.++ +||||+++++++...+. .++||||+
T Consensus 16 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~--~~lv~e~~ 93 (289)
T 1x8b_A 16 LEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDH--MLIQNEYC 93 (289)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTE--EEEEEECC
T ss_pred hhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCe--EEEEEEec
Confidence 578999999999999985 8999999998643 233457789999999999 99999999999988776 99999999
Q ss_pred CCCCHHHHHhcC
Q 003307 813 NAQSLAVYLQGK 824 (832)
Q Consensus 813 ~~GsL~~~l~~~ 824 (832)
++|+|.++++..
T Consensus 94 ~~~~L~~~l~~~ 105 (289)
T 1x8b_A 94 NGGSLADAISEN 105 (289)
T ss_dssp TTCBHHHHHHHH
T ss_pred CCCcHHHHHHhh
Confidence 999999999764
|
| >3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.06 E-value=2e-10 Score=123.74 Aligned_cols=84 Identities=20% Similarity=0.272 Sum_probs=73.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC-----ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG-----IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-----~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.+.||+|+||.||+|+. .+++.||||++... .....+.|.+|++++.+++|||||+++++|...+. .++|||
T Consensus 31 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~--~~lv~e 108 (345)
T 3hko_A 31 KGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQY--ICLVME 108 (345)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEEE
T ss_pred cceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCCe--EEEEEe
Confidence 67899999999999997 48899999998532 22345779999999999999999999999988776 999999
Q ss_pred cCCCCCHHHHHh
Q 003307 811 YINAQSLAVYLQ 822 (832)
Q Consensus 811 ~~~~GsL~~~l~ 822 (832)
||++|+|.+++.
T Consensus 109 ~~~gg~L~~~l~ 120 (345)
T 3hko_A 109 LCHGGHLLDKLN 120 (345)
T ss_dssp CCCSCBHHHHEE
T ss_pred CCCCCcHHHHHH
Confidence 999999999985
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-10 Score=120.65 Aligned_cols=83 Identities=29% Similarity=0.486 Sum_probs=72.3
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
.+.||+|+||.||+|+.. ++.||||++... ...+.|.+|++++++++|||||+++++|. +. .++||||+++|+
T Consensus 13 ~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~--~~lv~e~~~~~~ 85 (307)
T 2eva_A 13 EEVVGRGAFGVVCKAKWR-AKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACL--NP--VCLVMEYAEGGS 85 (307)
T ss_dssp EEEEECCSSSEEEEEEET-TEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCT--TT--TEEEEECCTTCB
T ss_pred eeEeecCCCceEEEEEEC-CeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CC--cEEEEEcCCCCC
Confidence 678999999999999984 789999998643 23577999999999999999999999886 34 789999999999
Q ss_pred HHHHHhcCCC
Q 003307 817 LAVYLQGKGL 826 (832)
Q Consensus 817 L~~~l~~~~~ 826 (832)
|.++++..+.
T Consensus 86 L~~~l~~~~~ 95 (307)
T 2eva_A 86 LYNVLHGAEP 95 (307)
T ss_dssp HHHHHHCSSS
T ss_pred HHHHHhccCC
Confidence 9999987654
|
| >3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.9e-10 Score=118.42 Aligned_cols=91 Identities=19% Similarity=0.325 Sum_probs=77.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+. .+|+.||||.+.... ....+.+.+|++++.+++||||+++++++...+. .++||||+
T Consensus 16 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~ 93 (278)
T 3cok_A 16 GNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNY--VYLVLEMC 93 (278)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSE--EEEEEECC
T ss_pred eeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCe--EEEEEecC
Confidence 67899999999999997 589999999985321 1224678999999999999999999999988776 99999999
Q ss_pred CCCCHHHHHhcC-CCccc
Q 003307 813 NAQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~-~~l~w 829 (832)
++|+|.+++... ..+++
T Consensus 94 ~~~~L~~~l~~~~~~~~~ 111 (278)
T 3cok_A 94 HNGEMNRYLKNRVKPFSE 111 (278)
T ss_dssp TTEEHHHHHHTCSSCCCH
T ss_pred CCCcHHHHHhhccCCCCH
Confidence 999999999865 44554
|
| >3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.1e-10 Score=124.08 Aligned_cols=87 Identities=25% Similarity=0.359 Sum_probs=74.7
Q ss_pred cCeeeeccCceEEEEEE--------CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEE
Q 003307 737 AEVIGRSCHGTLYKATL--------DSGSILAVKRLREG-IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKL 806 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~--------~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~ 806 (832)
...||+|+||.||+|+. ..+..||||+++.. .....+.+.+|++++.++ +|||||+++++|...+. .+
T Consensus 74 ~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~--~~ 151 (382)
T 3tt0_A 74 GKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGP--LY 151 (382)
T ss_dssp EEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS--CE
T ss_pred eeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccCCc--eE
Confidence 67899999999999985 13357999999654 334457799999999999 99999999999988777 99
Q ss_pred EEEecCCCCCHHHHHhcCC
Q 003307 807 VISNYINAQSLAVYLQGKG 825 (832)
Q Consensus 807 lv~e~~~~GsL~~~l~~~~ 825 (832)
+||||+++|+|.++++..+
T Consensus 152 lv~e~~~~g~L~~~l~~~~ 170 (382)
T 3tt0_A 152 VIVEYASKGNLREYLQARR 170 (382)
T ss_dssp EEEECCTTCBHHHHHHHTC
T ss_pred EEEEecCCCcHHHHHHHhc
Confidence 9999999999999998754
|
| >1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.7e-10 Score=120.89 Aligned_cols=87 Identities=28% Similarity=0.375 Sum_probs=75.6
Q ss_pred cCeeeeccCceEEEEEE------CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATL------DSGSILAVKRLREGI-AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv 808 (832)
...||+|+||.||+|+. .+++.||||+++... ....+.|.+|++++.++ +||||++++++|...+. .++|
T Consensus 28 ~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~--~~lv 105 (313)
T 1t46_A 28 GKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGP--TLVI 105 (313)
T ss_dssp EEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS--CEEE
T ss_pred HHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCC--cEEE
Confidence 67899999999999984 357899999996543 33457799999999999 99999999999988777 9999
Q ss_pred EecCCCCCHHHHHhcCC
Q 003307 809 SNYINAQSLAVYLQGKG 825 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~ 825 (832)
|||+++|+|.++++..+
T Consensus 106 ~e~~~~~~L~~~l~~~~ 122 (313)
T 1t46_A 106 TEYCCYGDLLNFLRRKR 122 (313)
T ss_dssp EECCTTEEHHHHHHHTT
T ss_pred EecCCCCCHHHHHHhcc
Confidence 99999999999998654
|
| >4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-10 Score=130.65 Aligned_cols=92 Identities=18% Similarity=0.215 Sum_probs=70.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+. .+|+.||||+++.. .......+.+|++++.+++|||||+++++|...+. .++|||||
T Consensus 153 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~--~~lv~e~~ 230 (446)
T 4ejn_A 153 LKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDR--LCFVMEYA 230 (446)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTE--EEEEECCC
T ss_pred eEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCE--EEEEEeeC
Confidence 67899999999999997 48999999998542 22234568899999999999999999999998777 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.+++...+.+++.
T Consensus 231 ~~~~L~~~l~~~~~~~~~ 248 (446)
T 4ejn_A 231 NGGELFFHLSRERVFSED 248 (446)
T ss_dssp SSCBHHHHHHHHSCCCHH
T ss_pred CCCcHHHHHHhcCCCCHH
Confidence 999999999877766653
|
| >2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.4e-10 Score=122.81 Aligned_cols=88 Identities=18% Similarity=0.197 Sum_probs=75.0
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||.||+|+.. +|+.||||+++.... .+.+|++++.++ +|||||++++++.+.+. .++|||||++
T Consensus 27 ~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~--~~lv~E~~~g 100 (342)
T 2qr7_A 27 KEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVYDDGKY--VYVVTELMKG 100 (342)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEEECSSE--EEEEECCCCS
T ss_pred EEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEEEcCCE--EEEEEeCCCC
Confidence 568999999999999985 799999999965432 245688888887 79999999999987776 9999999999
Q ss_pred CCHHHHHhcCCCcccc
Q 003307 815 QSLAVYLQGKGLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~~~l~w~ 830 (832)
|+|.+++...+.+++.
T Consensus 101 g~L~~~i~~~~~~~~~ 116 (342)
T 2qr7_A 101 GELLDKILRQKFFSER 116 (342)
T ss_dssp CBHHHHHHTCTTCCHH
T ss_pred CcHHHHHHHcCCCCHH
Confidence 9999999888777654
|
| >3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4.1e-10 Score=119.42 Aligned_cols=90 Identities=26% Similarity=0.346 Sum_probs=74.2
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|+..+|+.||||++.... ....+.+.+|++++++++|||||++++++...+. .++|||||+
T Consensus 26 ~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~e~~~- 102 (311)
T 3niz_A 26 LEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERC--LTLVFEFME- 102 (311)
T ss_dssp EEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSC--EEEEEECCS-
T ss_pred hhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCE--EEEEEcCCC-
Confidence 67899999999999999889999999985432 2234678999999999999999999999987777 999999999
Q ss_pred CCHHHHHhcCC-Cccc
Q 003307 815 QSLAVYLQGKG-LVLW 829 (832)
Q Consensus 815 GsL~~~l~~~~-~l~w 829 (832)
|+|.+++...+ .+++
T Consensus 103 ~~l~~~~~~~~~~~~~ 118 (311)
T 3niz_A 103 KDLKKVLDENKTGLQD 118 (311)
T ss_dssp EEHHHHHHTCTTCCCH
T ss_pred CCHHHHHHhccCCCCH
Confidence 58888887643 3544
|
| >2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.2e-10 Score=130.57 Aligned_cols=89 Identities=19% Similarity=0.311 Sum_probs=74.9
Q ss_pred eeeeccCceEEEEEEC---CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 739 VIGRSCHGTLYKATLD---SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~~---~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.||+|+||.||+|++. ++..||||+++... ....++|.+|+++|.+++|||||+++++|.. +. .++|||||++
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~--~~lv~E~~~~ 419 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EA--LMLVMEMAGG 419 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SS--EEEEEECCTT
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CC--eEEEEEeCCC
Confidence 6999999999999863 56789999996542 3356789999999999999999999999976 44 8999999999
Q ss_pred CCHHHHHhcCC-Ccccc
Q 003307 815 QSLAVYLQGKG-LVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~~-~l~w~ 830 (832)
|+|.++++.++ .++|.
T Consensus 420 g~L~~~l~~~~~~l~~~ 436 (613)
T 2ozo_A 420 GPLHKFLVGKREEIPVS 436 (613)
T ss_dssp CBHHHHHTTCTTTSCHH
T ss_pred CcHHHHHhhccCCCCHH
Confidence 99999997643 46653
|
| >2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-10 Score=123.61 Aligned_cols=92 Identities=20% Similarity=0.228 Sum_probs=77.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
..+||+|+||+||+|+.. +|+.||||+++... ....+.+..|.+++..+ +||+|+++++++...+. .++||||
T Consensus 25 ~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~--~~lv~E~ 102 (353)
T 2i0e_A 25 LMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDR--LYFVMEY 102 (353)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSE--EEEEEEC
T ss_pred EEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCE--EEEEEeC
Confidence 678999999999999985 68999999985431 12346688999999988 89999999999988776 9999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
|++|+|.++++..+.+++.
T Consensus 103 ~~gg~L~~~l~~~~~~~~~ 121 (353)
T 2i0e_A 103 VNGGDLMYHIQQVGRFKEP 121 (353)
T ss_dssp CCSCBHHHHHHHHSSCCHH
T ss_pred CCCCcHHHHHHhcCCCCHH
Confidence 9999999999876666653
|
| >3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.4e-10 Score=129.30 Aligned_cols=92 Identities=17% Similarity=0.213 Sum_probs=79.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+.. +|+.||||++... .....+.+.+|++++.+++|||||++++++..... .++|||||+
T Consensus 27 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~--~~lv~e~~~ 104 (486)
T 3mwu_A 27 VCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSS--FYIVGELYT 104 (486)
T ss_dssp EEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEECCCC
T ss_pred eEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCE--EEEEEEcCC
Confidence 578999999999999974 8999999998532 12235779999999999999999999999998776 999999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
+|+|.+++...+.+++.
T Consensus 105 ~~~L~~~~~~~~~~~~~ 121 (486)
T 3mwu_A 105 GGELFDEIIKRKRFSEH 121 (486)
T ss_dssp SCBHHHHHHHHSSCCHH
T ss_pred CCcHHHHHHhcCCCCHH
Confidence 99999999877766653
|
| >3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... | Back alignment and structure |
|---|
Probab=99.04 E-value=3.2e-10 Score=118.68 Aligned_cols=90 Identities=28% Similarity=0.375 Sum_probs=77.6
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+.. ++..||||.+..... ..+.|.+|++++++++||||+++++++...+. .++||||+++|
T Consensus 18 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~--~~~v~e~~~~~ 94 (288)
T 3kfa_A 18 KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP--FYIITEFMTYG 94 (288)
T ss_dssp EEESGGGTTCSEEEEEEGGGTEEEEEEEECSCST-HHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS--EEEEEECCTTE
T ss_pred EeecCCCCceeEEEeEecCCCEEEEEEecCcCHH-HHHHHHHHHHHHHhCCCCCEeeEEEEEccCCC--EEEEEEcCCCC
Confidence 678999999999999985 689999999965432 45779999999999999999999999988777 99999999999
Q ss_pred CHHHHHhcCC--Cccc
Q 003307 816 SLAVYLQGKG--LVLW 829 (832)
Q Consensus 816 sL~~~l~~~~--~l~w 829 (832)
+|.++++... .++|
T Consensus 95 ~L~~~~~~~~~~~~~~ 110 (288)
T 3kfa_A 95 NLLDYLRECNRQEVSA 110 (288)
T ss_dssp EHHHHHHHCCTTTSCH
T ss_pred cHHHHHHhcccCCccH
Confidence 9999998643 3554
|
| >2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 | Back alignment and structure |
|---|
Probab=99.04 E-value=2.6e-10 Score=130.34 Aligned_cols=89 Identities=21% Similarity=0.452 Sum_probs=75.7
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
...||+|+||.||+|+..++..||||+++.... ..++|.+|+++|.+++|||||+++++|.. +. .++|||||++|+
T Consensus 272 ~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~--~~lv~e~~~~gs 347 (535)
T 2h8h_A 272 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EP--IYIVTEYMSKGS 347 (535)
T ss_dssp EEEEEECSSEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SS--CEEEECCCTTEE
T ss_pred heecccCCCeEEEEEEECCCceEEEEEeCCCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEee-cc--ceEeeehhcCCc
Confidence 668999999999999998778899999975432 35789999999999999999999999975 44 899999999999
Q ss_pred HHHHHhcC--CCccc
Q 003307 817 LAVYLQGK--GLVLW 829 (832)
Q Consensus 817 L~~~l~~~--~~l~w 829 (832)
|.++|+.. ..++|
T Consensus 348 L~~~l~~~~~~~l~~ 362 (535)
T 2h8h_A 348 LLDFLKGETGKYLRL 362 (535)
T ss_dssp HHHHHSHHHHTTCCH
T ss_pred HHHHHhhcCCCCCCH
Confidence 99999743 33544
|
| >2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... | Back alignment and structure |
|---|
Probab=99.04 E-value=3e-10 Score=118.76 Aligned_cols=91 Identities=21% Similarity=0.333 Sum_probs=77.7
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+.. ++..||||++.... ....+.+.+|++++.+++||||+++++++...+. .++||||+
T Consensus 19 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~ 96 (284)
T 2vgo_A 19 GRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKR--IYLMLEFA 96 (284)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE--EEEEECCC
T ss_pred eheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCE--EEEEEEeC
Confidence 678999999999999985 78899999985321 1234679999999999999999999999987766 99999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.+++...+.+++
T Consensus 97 ~~~~L~~~l~~~~~~~~ 113 (284)
T 2vgo_A 97 PRGELYKELQKHGRFDE 113 (284)
T ss_dssp TTEEHHHHHHHHSSCCH
T ss_pred CCCcHHHHHHhcCCCCH
Confidence 99999999987666654
|
| >3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.4e-10 Score=128.47 Aligned_cols=91 Identities=12% Similarity=0.235 Sum_probs=74.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC--------hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI--------AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLV 807 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--------~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~l 807 (832)
.+.||+|+||.||+|.. .+|+.||||++.... ......|.+|++++.+++|||||++++++.. +. .++
T Consensus 140 ~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~-~~--~~l 216 (419)
T 3i6u_A 140 SKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA-ED--YYI 216 (419)
T ss_dssp EEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES-SE--EEE
T ss_pred EeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec-Cc--eEE
Confidence 56799999999999997 478999999985321 1112348899999999999999999999864 33 799
Q ss_pred EEecCCCCCHHHHHhcCCCcccc
Q 003307 808 ISNYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 808 v~e~~~~GsL~~~l~~~~~l~w~ 830 (832)
|||||++|+|.+++...+.++|.
T Consensus 217 v~e~~~~g~L~~~l~~~~~~~~~ 239 (419)
T 3i6u_A 217 VLELMEGGELFDKVVGNKRLKEA 239 (419)
T ss_dssp EEECCTTCBGGGGTSSSCCCCHH
T ss_pred EEEcCCCCcHHHHHhccCCCCHH
Confidence 99999999999999887777653
|
| >2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A | Back alignment and structure |
|---|
Probab=99.03 E-value=4.3e-10 Score=122.14 Aligned_cols=92 Identities=21% Similarity=0.282 Sum_probs=77.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh--------hhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA--------KGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKL 806 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~--------~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~ 806 (832)
.+.||+|+||.||+|+.. +|+.||||+++.... ...+.+.+|++++.++ +||||+++++++..... .+
T Consensus 99 ~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~--~~ 176 (365)
T 2y7j_A 99 KDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSF--MF 176 (365)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEBSSE--EE
T ss_pred ceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEeeCCE--EE
Confidence 578999999999999985 899999999854321 1245688999999999 79999999999987776 99
Q ss_pred EEEecCCCCCHHHHHhcCCCcccc
Q 003307 807 VISNYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 807 lv~e~~~~GsL~~~l~~~~~l~w~ 830 (832)
+|||||++|+|.+++.....++|.
T Consensus 177 lv~e~~~g~~L~~~l~~~~~l~~~ 200 (365)
T 2y7j_A 177 LVFDLMRKGELFDYLTEKVALSEK 200 (365)
T ss_dssp EEECCCTTCBHHHHHHHHSSCCHH
T ss_pred EEEEeCCCCcHHHHHHhcCCCCHH
Confidence 999999999999999876666653
|
| >3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.7e-10 Score=121.91 Aligned_cols=89 Identities=10% Similarity=0.103 Sum_probs=74.3
Q ss_pred cCeeeeccCceEEEEE------ECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCC---CCcceeeeeEEECCCCceEEE
Q 003307 737 AEVIGRSCHGTLYKAT------LDSGSILAVKRLREGIAKGKKEFAREVKKLGNIK---HPNLVSLQGYYWGPKEHEKLV 807 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~------~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~---H~niv~l~g~~~~~~~~~~~l 807 (832)
.+.||+|+||.||+|+ ..+|+.||||+++... ..+|..|++++.+++ |+||+++++++...+. .++
T Consensus 70 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~~--~~l 144 (365)
T 3e7e_A 70 HHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN---PWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQNG--SVL 144 (365)
T ss_dssp EEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC---HHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSSC--EEE
T ss_pred EEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC---hhHHHHHHHHHHHhhhhhhhhhhhhheeeecCCC--cEE
Confidence 6789999999999994 3578999999996543 457888888888887 9999999999998887 999
Q ss_pred EEecCCCCCHHHHHhc-----CCCcccc
Q 003307 808 ISNYINAQSLAVYLQG-----KGLVLWF 830 (832)
Q Consensus 808 v~e~~~~GsL~~~l~~-----~~~l~w~ 830 (832)
|||||++|+|.++++. .+.++|.
T Consensus 145 v~e~~~~g~L~~~l~~~~~~~~~~l~~~ 172 (365)
T 3e7e_A 145 VGELYSYGTLLNAINLYKNTPEKVMPQG 172 (365)
T ss_dssp EECCCCSCBHHHHHHHHHTSTTCSCCHH
T ss_pred EEeccCCCcHHHHHHHhhcccccCCCHH
Confidence 9999999999999974 4456653
|
| >3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0 | Back alignment and structure |
|---|
Probab=99.03 E-value=3.5e-10 Score=117.24 Aligned_cols=89 Identities=26% Similarity=0.390 Sum_probs=71.7
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCC----hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGI----AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~----~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+.. |..||||+++... ....+.+.+|++++.+++||||++++++|...+. .++||||+
T Consensus 12 ~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~ 88 (271)
T 3dtc_A 12 EEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPN--LCLVMEFA 88 (271)
T ss_dssp EEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC----CEEEEECC
T ss_pred eeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCc--eEEEEEcC
Confidence 678999999999999974 8999999985432 2234679999999999999999999999988776 89999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.++++++ .+++
T Consensus 89 ~~~~L~~~~~~~-~~~~ 104 (271)
T 3dtc_A 89 RGGPLNRVLSGK-RIPP 104 (271)
T ss_dssp TTEEHHHHHTSS-CCCH
T ss_pred CCCCHHHHhhcC-CCCH
Confidence 999999998643 4444
|
| >2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=7.4e-10 Score=117.32 Aligned_cols=85 Identities=21% Similarity=0.350 Sum_probs=72.8
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+. .+|+.||||+++.. .....+.|.+|++++.+++||||+++++++...+. .++||||+
T Consensus 37 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~ 114 (310)
T 2wqm_A 37 EKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNE--LNIVLELA 114 (310)
T ss_dssp EEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTE--EEEEEECC
T ss_pred EEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCc--EEEEEecC
Confidence 67899999999999997 58999999998642 23445779999999999999999999999988776 99999999
Q ss_pred CCCCHHHHHhc
Q 003307 813 NAQSLAVYLQG 823 (832)
Q Consensus 813 ~~GsL~~~l~~ 823 (832)
++|+|.+++..
T Consensus 115 ~~~~L~~~l~~ 125 (310)
T 2wqm_A 115 DAGDLSRMIKH 125 (310)
T ss_dssp CSCBHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 99999999864
|
| >2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=5.2e-10 Score=117.10 Aligned_cols=91 Identities=18% Similarity=0.216 Sum_probs=78.6
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+.. +|+.||||++... .....+.+.+|++++.+++||||+++++++...+. .++|+||++
T Consensus 27 ~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~ 104 (287)
T 2wei_A 27 VCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSS--FYIVGELYT 104 (287)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE--EEEEECCCC
T ss_pred eEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCe--EEEEEEccC
Confidence 678999999999999985 7999999998532 22346779999999999999999999999987776 999999999
Q ss_pred CCCHHHHHhcCCCccc
Q 003307 814 AQSLAVYLQGKGLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w 829 (832)
+|+|.+++...+.+++
T Consensus 105 ~~~L~~~l~~~~~~~~ 120 (287)
T 2wei_A 105 GGELFDEIIKRKRFSE 120 (287)
T ss_dssp SCBHHHHHHHHSSCCH
T ss_pred CCCHHHHHHhcCCCCH
Confidence 9999999987666665
|
| >3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A | Back alignment and structure |
|---|
Probab=99.03 E-value=5.5e-10 Score=117.26 Aligned_cols=90 Identities=27% Similarity=0.334 Sum_probs=73.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|+||.||+|+.. +|+.||||+++.. .....+.+.+|++++.+++|||||++++++...+. .++|||||+
T Consensus 7 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~ 84 (292)
T 3o0g_A 7 LEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKK--LTLVFEFCD 84 (292)
T ss_dssp EEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTE--EEEEEECCS
T ss_pred eeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCE--EEEEEecCC
Confidence 567999999999999984 7999999998543 23345778999999999999999999999988776 999999999
Q ss_pred CCCHHHHHh-cCCCccc
Q 003307 814 AQSLAVYLQ-GKGLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~-~~~~l~w 829 (832)
+ ++.+.+. ..+.+++
T Consensus 85 ~-~l~~~~~~~~~~l~~ 100 (292)
T 3o0g_A 85 Q-DLKKYFDSCNGDLDP 100 (292)
T ss_dssp E-EHHHHHHHTTTCCCH
T ss_pred C-CHHHHHHhCCCCCCH
Confidence 6 5555554 3455554
|
| >2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... | Back alignment and structure |
|---|
Probab=99.03 E-value=2.7e-10 Score=118.46 Aligned_cols=91 Identities=14% Similarity=0.116 Sum_probs=78.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|+.. +|+.||||+++.. .....+.+.+|++++.+++||||+++++++...+. .++|+||+++
T Consensus 12 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~ 89 (276)
T 2yex_A 12 VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNI--QYLFLEYCSG 89 (276)
T ss_dssp EEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTE--EEEEEECCTT
T ss_pred EEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCE--EEEEEEecCC
Confidence 568999999999999985 8999999998543 23345779999999999999999999999987776 8999999999
Q ss_pred CCHHHHHhcCCCccc
Q 003307 815 QSLAVYLQGKGLVLW 829 (832)
Q Consensus 815 GsL~~~l~~~~~l~w 829 (832)
|+|.+++.....+++
T Consensus 90 ~~L~~~l~~~~~~~~ 104 (276)
T 2yex_A 90 GELFDRIEPDIGMPE 104 (276)
T ss_dssp EEGGGGSBTTTBCCH
T ss_pred CcHHHHHhhccCCCH
Confidence 999999887666654
|
| >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=4.3e-10 Score=120.40 Aligned_cols=92 Identities=23% Similarity=0.249 Sum_probs=78.6
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+.. +|+.||||++... .....+.+.+|++++.+++||||++++++|...+. .++||||++
T Consensus 30 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~ 107 (331)
T 4aaa_A 30 LGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKR--WYLVFEFVD 107 (331)
T ss_dssp EEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTE--EEEEEECCS
T ss_pred eeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCE--EEEEEecCC
Confidence 678999999999999985 7999999988543 23335668899999999999999999999988776 999999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
+|+|.+++...+.++|.
T Consensus 108 ~~~l~~~~~~~~~~~~~ 124 (331)
T 4aaa_A 108 HTILDDLELFPNGLDYQ 124 (331)
T ss_dssp EEHHHHHHHSTTCCCHH
T ss_pred cchHHHHHhhccCCCHH
Confidence 99999988776666653
|
| >1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... | Back alignment and structure |
|---|
Probab=99.02 E-value=3.9e-10 Score=117.48 Aligned_cols=84 Identities=23% Similarity=0.382 Sum_probs=73.0
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
...||+|+||.||+|+..++..||||++..... ..+.|.+|++++.+++||||+++++++.. +. .++||||+++|+
T Consensus 18 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~--~~~v~e~~~~~~ 93 (279)
T 1qpc_A 18 VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-SPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EP--IYIITEYMENGS 93 (279)
T ss_dssp EEEEEEETTEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SS--CEEEEECCTTCB
T ss_pred eeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc-cHHHHHHHHHHHHhCCCcCcceEEEEEcC-CC--cEEEEecCCCCC
Confidence 678999999999999988888999999965432 35779999999999999999999999864 34 799999999999
Q ss_pred HHHHHhcC
Q 003307 817 LAVYLQGK 824 (832)
Q Consensus 817 L~~~l~~~ 824 (832)
|.++++..
T Consensus 94 L~~~l~~~ 101 (279)
T 1qpc_A 94 LVDFLKTP 101 (279)
T ss_dssp HHHHTTSH
T ss_pred HHHHHhcC
Confidence 99998753
|
| >1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.01 E-value=6.5e-10 Score=119.08 Aligned_cols=91 Identities=30% Similarity=0.495 Sum_probs=75.8
Q ss_pred cCeeeeccCceEEEEEEC-C----CCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD-S----GSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~----g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.+.||+|+||.||+|+.. + +..||||.++.. .......|.+|++++.+++||||+++++++...+. .++|||
T Consensus 49 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e 126 (333)
T 1mqb_A 49 QKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKP--MMIITE 126 (333)
T ss_dssp EEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS--EEEEEE
T ss_pred ccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCC--cEEEEe
Confidence 578999999999999863 2 246999999654 33345679999999999999999999999987777 999999
Q ss_pred cCCCCCHHHHHhcC-CCccc
Q 003307 811 YINAQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 811 ~~~~GsL~~~l~~~-~~l~w 829 (832)
|+++|+|.++++.. ..++|
T Consensus 127 ~~~~~~L~~~l~~~~~~~~~ 146 (333)
T 1mqb_A 127 YMENGALDKFLREKDGEFSV 146 (333)
T ss_dssp CCTTEEHHHHHHHTTTCSCH
T ss_pred CCCCCcHHHHHHhCCCCCCH
Confidence 99999999999865 44554
|
| >1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.01 E-value=4e-10 Score=121.36 Aligned_cols=87 Identities=26% Similarity=0.358 Sum_probs=72.9
Q ss_pred cCeeeeccCceEEEEEE------CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATL------DSGSILAVKRLREGI-AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv 808 (832)
.+.||+|+||.||+|+. .++..||||.+.... ....+.+.+|++++.++ +||||++++++|...+. .++|
T Consensus 50 ~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~--~~lv 127 (344)
T 1rjb_A 50 GKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGP--IYLI 127 (344)
T ss_dssp EEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS--CEEE
T ss_pred eeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCCc--cEEE
Confidence 67899999999999995 245689999996432 23346799999999999 89999999999988777 9999
Q ss_pred EecCCCCCHHHHHhcCC
Q 003307 809 SNYINAQSLAVYLQGKG 825 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~ 825 (832)
|||+++|+|.++++..+
T Consensus 128 ~e~~~~g~L~~~l~~~~ 144 (344)
T 1rjb_A 128 FEYCCYGDLLNYLRSKR 144 (344)
T ss_dssp EECCTTCBHHHHHHTTT
T ss_pred EecCCCCcHHHHHhhcc
Confidence 99999999999998653
|
| >1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=7.6e-10 Score=115.45 Aligned_cols=90 Identities=18% Similarity=0.256 Sum_probs=74.3
Q ss_pred cCeeeeccCceEEEEEEC----CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD----SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
...||+|+||.||+|+.. .+..||||+++.. .....+.|.+|++++.+++||||+++++++.. +. .++||||
T Consensus 20 ~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~--~~lv~e~ 96 (281)
T 1mp8_A 20 GRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE-NP--VWIIMEL 96 (281)
T ss_dssp EEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS-SS--CEEEEEC
T ss_pred EeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEcc-Cc--cEEEEec
Confidence 678999999999999873 3457999998653 33445779999999999999999999999853 44 7999999
Q ss_pred CCCCCHHHHHhcCC-Cccc
Q 003307 812 INAQSLAVYLQGKG-LVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~~-~l~w 829 (832)
+++|+|.++++.++ .++|
T Consensus 97 ~~~~~L~~~l~~~~~~~~~ 115 (281)
T 1mp8_A 97 CTLGELRSFLQVRKYSLDL 115 (281)
T ss_dssp CTTEEHHHHHHHTTTTSCH
T ss_pred CCCCCHHHHHHhcCCCCCH
Confidence 99999999998654 4554
|
| >2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.7e-10 Score=123.80 Aligned_cols=91 Identities=30% Similarity=0.349 Sum_probs=68.8
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHH-HhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKK-LGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~-l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
..+||+|+||+||+|+.. +|+.||||+++... ....+.+.+|..+ +..++|||||++++++...+. .++||||
T Consensus 43 ~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~--~~lv~E~ 120 (373)
T 2r5t_A 43 LKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADK--LYFVLDY 120 (373)
T ss_dssp EEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSE--EEEEEEC
T ss_pred EEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCE--EEEEEeC
Confidence 678999999999999985 78999999995432 2233456777776 577899999999999998776 9999999
Q ss_pred CCCCCHHHHHhcCCCccc
Q 003307 812 INAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w 829 (832)
|++|+|.++++..+.+++
T Consensus 121 ~~gg~L~~~l~~~~~~~~ 138 (373)
T 2r5t_A 121 INGGELFYHLQRERCFLE 138 (373)
T ss_dssp CCSCBHHHHHHHHSSCCH
T ss_pred CCCCcHHHHHHhcCCCCH
Confidence 999999999987666654
|
| >3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=4.2e-10 Score=120.37 Aligned_cols=91 Identities=23% Similarity=0.282 Sum_probs=75.1
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCCh--hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIA--KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+. .+|+.||||+++.... ...+.+.+|++++++++|||||++++++...+. .++||||++
T Consensus 39 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~ 116 (329)
T 3gbz_A 39 ITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHR--LHLIFEYAE 116 (329)
T ss_dssp EEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTE--EEEEEECCS
T ss_pred EEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCE--EEEEEecCC
Confidence 67899999999999997 4899999999964322 234568899999999999999999999988777 999999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
|+|.+++...+.+++.
T Consensus 117 -~~L~~~~~~~~~~~~~ 132 (329)
T 3gbz_A 117 -NDLKKYMDKNPDVSMR 132 (329)
T ss_dssp -EEHHHHHHHCTTCCHH
T ss_pred -CCHHHHHhhcCCCCHH
Confidence 5999999887776653
|
| >1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... | Back alignment and structure |
|---|
Probab=99.01 E-value=5.4e-10 Score=119.08 Aligned_cols=85 Identities=21% Similarity=0.369 Sum_probs=73.8
Q ss_pred cCeeeeccCceEEEEEEC------CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
.+.||+|+||.||+|+.. +++.||||.+... .......|.+|++++.+++||||+++++++...+. .++||
T Consensus 30 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~ 107 (322)
T 1p4o_A 30 SRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQP--TLVIM 107 (322)
T ss_dssp EEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSS--CEEEE
T ss_pred eeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccCCc--cEEEE
Confidence 678999999999999853 4788999999644 33345679999999999999999999999987777 89999
Q ss_pred ecCCCCCHHHHHhc
Q 003307 810 NYINAQSLAVYLQG 823 (832)
Q Consensus 810 e~~~~GsL~~~l~~ 823 (832)
||+++|+|.++++.
T Consensus 108 e~~~~~~L~~~l~~ 121 (322)
T 1p4o_A 108 ELMTRGDLKSYLRS 121 (322)
T ss_dssp ECCTTCBHHHHHHH
T ss_pred EeCCCCcHHHHHHH
Confidence 99999999999975
|
| >2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=5.4e-10 Score=119.44 Aligned_cols=87 Identities=20% Similarity=0.321 Sum_probs=72.6
Q ss_pred cCeeeeccCceEEEEEE------CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL------DSGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
...||+|+||.||+|+. .+|..||||++... ......+|.+|++++.+++||||+++++++...+. .++||
T Consensus 35 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~ 112 (327)
T 2yfx_A 35 IRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLP--RFILM 112 (327)
T ss_dssp EEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS--CEEEE
T ss_pred EEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCC--cEEEE
Confidence 57899999999999983 36789999999643 34456789999999999999999999999988777 89999
Q ss_pred ecCCCCCHHHHHhcCC
Q 003307 810 NYINAQSLAVYLQGKG 825 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~ 825 (832)
||+++|+|.++++..+
T Consensus 113 e~~~~~~L~~~l~~~~ 128 (327)
T 2yfx_A 113 ELMAGGDLKSFLRETR 128 (327)
T ss_dssp ECCTTEEHHHHHHHTS
T ss_pred ecCCCCcHHHHHHhhc
Confidence 9999999999998654
|
| >3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.00 E-value=1e-09 Score=115.45 Aligned_cols=92 Identities=23% Similarity=0.334 Sum_probs=75.0
Q ss_pred cCeeeeccCceEEEEEE-CCC---CEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATL-DSG---SILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g---~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
++.||+|+||.||+|+. .++ ..||||++... .....+.|.+|++++++++|||||++++++...+. ..++|+||
T Consensus 26 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~-~~~~v~e~ 104 (298)
T 3pls_A 26 DRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEG-LPHVLLPY 104 (298)
T ss_dssp EEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSS-CCEEEECC
T ss_pred CceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCC-CcEEEEec
Confidence 67899999999999986 233 37999998653 33445789999999999999999999999976654 24899999
Q ss_pred CCCCCHHHHHhcC-CCccc
Q 003307 812 INAQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~-~~l~w 829 (832)
+++|+|.++++.. +.++|
T Consensus 105 ~~~~~L~~~~~~~~~~~~~ 123 (298)
T 3pls_A 105 MCHGDLLQFIRSPQRNPTV 123 (298)
T ss_dssp CTTCBHHHHHHCTTCCCBH
T ss_pred ccCCCHHHHHhccccCCCH
Confidence 9999999999863 34554
|
| >1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=7.1e-10 Score=116.33 Aligned_cols=89 Identities=21% Similarity=0.239 Sum_probs=73.8
Q ss_pred eeeeccCceEEEEEE---CCCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 739 VIGRSCHGTLYKATL---DSGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~---~~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.||+|+||.||+|.. .+++.||||+++... ....++|.+|++++.+++||||+++++++. .+. .++||||++
T Consensus 24 ~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~--~~lv~e~~~ 100 (291)
T 1xbb_A 24 ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE-AES--WMLVMEMAE 100 (291)
T ss_dssp EEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-SSS--EEEEEECCT
T ss_pred ccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEC-CCC--cEEEEEeCC
Confidence 899999999999964 357899999986432 223577999999999999999999999994 344 899999999
Q ss_pred CCCHHHHHhcCCCcccc
Q 003307 814 AQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w~ 830 (832)
+|+|.++++..+.+++.
T Consensus 101 ~~~L~~~l~~~~~~~~~ 117 (291)
T 1xbb_A 101 LGPLNKYLQQNRHVKDK 117 (291)
T ss_dssp TEEHHHHHHHCTTCCHH
T ss_pred CCCHHHHHHhCcCCCHH
Confidence 99999999987766653
|
| >2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.9e-10 Score=119.79 Aligned_cols=86 Identities=20% Similarity=0.256 Sum_probs=67.8
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCCh--------------------------hhHHHHHHHHHHHhcCCCCc
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIA--------------------------KGKKEFAREVKKLGNIKHPN 789 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~--------------------------~~~~~f~~e~~~l~~~~H~n 789 (832)
.+.||+|+||.||+|+. .+|+.||||++..... ...+.|.+|++++++++|||
T Consensus 18 ~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ 97 (298)
T 2zv2_A 18 KDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHPN 97 (298)
T ss_dssp EEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHTCCCTT
T ss_pred EeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHhCCCCC
Confidence 67899999999999997 4789999999854321 11246899999999999999
Q ss_pred ceeeeeEEECCCCceEEEEEecCCCCCHHHHHh
Q 003307 790 LVSLQGYYWGPKEHEKLVISNYINAQSLAVYLQ 822 (832)
Q Consensus 790 iv~l~g~~~~~~~~~~~lv~e~~~~GsL~~~l~ 822 (832)
|+++++++........++||||+++|+|.+++.
T Consensus 98 iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~ 130 (298)
T 2zv2_A 98 VVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPT 130 (298)
T ss_dssp BCCEEEEEECSSSSEEEEEEECCTTCBSCCSSC
T ss_pred CCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhh
Confidence 999999998744335899999999999987543
|
| >1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.00 E-value=1e-09 Score=114.83 Aligned_cols=90 Identities=19% Similarity=0.299 Sum_probs=74.8
Q ss_pred cCeeeeccCceEEEEEEC---CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD---SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~---~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
+..||+|+||.||+|+.. ++..||||+++.. .....+.+.+|++++.+++||||+++++++. .+. .++||||+
T Consensus 15 ~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~--~~lv~e~~ 91 (287)
T 1u59_A 15 DIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ-AEA--LMLVMEMA 91 (287)
T ss_dssp EEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-SSS--EEEEEECC
T ss_pred hccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEec-CCC--cEEEEEeC
Confidence 347999999999999863 6788999999654 3345678999999999999999999999995 344 89999999
Q ss_pred CCCCHHHHHhcC-CCccc
Q 003307 813 NAQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~-~~l~w 829 (832)
++|+|.+++..+ ..++|
T Consensus 92 ~~~~L~~~l~~~~~~~~~ 109 (287)
T 1u59_A 92 GGGPLHKFLVGKREEIPV 109 (287)
T ss_dssp TTEEHHHHHTTCTTTSCH
T ss_pred CCCCHHHHHHhCCccCCH
Confidence 999999999754 34554
|
| >3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ... | Back alignment and structure |
|---|
Probab=99.00 E-value=8.4e-10 Score=117.91 Aligned_cols=91 Identities=24% Similarity=0.371 Sum_probs=69.8
Q ss_pred cCeeeeccCceEEEEEE-CCCCE----EEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSI----LAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~----vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.+.||+|+||.||+|+. .+|+. ||+|.++.. .....++|.+|++++++++|||||+++++|.... .++|+|
T Consensus 20 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~---~~~v~e 96 (327)
T 3poz_A 20 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST---VQLITQ 96 (327)
T ss_dssp EEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS---EEEEEE
T ss_pred ceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC---eEEEEE
Confidence 67899999999999996 35554 588887543 2334678999999999999999999999998644 789999
Q ss_pred cCCCCCHHHHHhcC-CCcccc
Q 003307 811 YINAQSLAVYLQGK-GLVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~-~~l~w~ 830 (832)
||++|+|.++++.. ..++|.
T Consensus 97 ~~~~g~L~~~l~~~~~~~~~~ 117 (327)
T 3poz_A 97 LMPFGCLLDYVREHKDNIGSQ 117 (327)
T ss_dssp CCTTCBHHHHHHHSTTSCCHH
T ss_pred ecCCCcHHHHHHhcCCCCCHH
Confidence 99999999999874 455553
|
| >1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A | Back alignment and structure |
|---|
Probab=99.00 E-value=6.7e-10 Score=116.33 Aligned_cols=90 Identities=26% Similarity=0.302 Sum_probs=75.7
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCCh--hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIA--KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~--~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||.||+|+..+|+.||||++..... ...+.+.+|++++.+++|||||++++++...+. .++||||+++
T Consensus 7 ~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~~ 84 (288)
T 1ob3_A 7 LEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKR--LVLVFEHLDQ 84 (288)
T ss_dssp EEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSC--EEEEEECCSE
T ss_pred hhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCe--EEEEEEecCC
Confidence 567999999999999988899999999854322 224678899999999999999999999998777 9999999995
Q ss_pred CCHHHHHhcC-CCccc
Q 003307 815 QSLAVYLQGK-GLVLW 829 (832)
Q Consensus 815 GsL~~~l~~~-~~l~w 829 (832)
+|.+++... +.+++
T Consensus 85 -~l~~~~~~~~~~~~~ 99 (288)
T 1ob3_A 85 -DLKKLLDVCEGGLES 99 (288)
T ss_dssp -EHHHHHHTSTTCCCH
T ss_pred -CHHHHHHhcccCCCH
Confidence 999998754 44444
|
| >1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=7.5e-10 Score=119.27 Aligned_cols=91 Identities=21% Similarity=0.329 Sum_probs=75.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+. .+|+.||||++.... ....+.|.+|++++.+++|||||+++++|...+. .++|||||
T Consensus 59 ~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~--~~lv~e~~ 136 (348)
T 1u5q_A 59 LREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHT--AWLVMEYC 136 (348)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTE--EEEEEECC
T ss_pred eeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCe--EEEEEecC
Confidence 56799999999999997 589999999985432 2234679999999999999999999999988776 99999999
Q ss_pred CCCCHHHHHhc-CCCcccc
Q 003307 813 NAQSLAVYLQG-KGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~-~~~l~w~ 830 (832)
+ |+|.+++.. ++.++|.
T Consensus 137 ~-g~l~~~l~~~~~~l~~~ 154 (348)
T 1u5q_A 137 L-GSASDLLEVHKKPLQEV 154 (348)
T ss_dssp S-EEHHHHHHHHTSCCCHH
T ss_pred C-CCHHHHHHHhcCCCCHH
Confidence 8 789888863 4456553
|
| >2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=5e-10 Score=119.39 Aligned_cols=90 Identities=12% Similarity=0.221 Sum_probs=73.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh--------hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA--------KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLV 807 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~--------~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~l 807 (832)
...||+|+||.||+|+.. +|+.||||.+..... .....|.+|++++.+++||||+++++++... . .++
T Consensus 15 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-~--~~l 91 (322)
T 2ycf_A 15 SKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE-D--YYI 91 (322)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESS-S--EEE
T ss_pred eeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCC-c--eEE
Confidence 678999999999999974 789999999854311 1234588999999999999999999998754 3 799
Q ss_pred EEecCCCCCHHHHHhcCCCccc
Q 003307 808 ISNYINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 808 v~e~~~~GsL~~~l~~~~~l~w 829 (832)
||||+++|+|.+++...+.+++
T Consensus 92 v~e~~~~~~L~~~~~~~~~~~~ 113 (322)
T 2ycf_A 92 VLELMEGGELFDKVVGNKRLKE 113 (322)
T ss_dssp EEECCTTEETHHHHSTTCCCCH
T ss_pred EEecCCCCcHHHHHhccCCCCH
Confidence 9999999999999987776665
|
| >3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B | Back alignment and structure |
|---|
Probab=98.99 E-value=7.4e-10 Score=125.58 Aligned_cols=86 Identities=20% Similarity=0.293 Sum_probs=74.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
..+||+|+||+||+|+.. +|+.||||++.... ....+.+.+|++++.+++|||||++++++...+. .++|||||
T Consensus 190 ~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~--l~lVmE~~ 267 (543)
T 3c4z_A 190 FRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTD--LCLVMTIM 267 (543)
T ss_dssp EEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEECCC
T ss_pred EEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCE--EEEEEEec
Confidence 467999999999999984 79999999995432 1234678999999999999999999999988776 99999999
Q ss_pred CCCCHHHHHhcC
Q 003307 813 NAQSLAVYLQGK 824 (832)
Q Consensus 813 ~~GsL~~~l~~~ 824 (832)
++|+|.++++..
T Consensus 268 ~gg~L~~~l~~~ 279 (543)
T 3c4z_A 268 NGGDIRYHIYNV 279 (543)
T ss_dssp TTCBHHHHHHTS
T ss_pred cCCCHHHHHHHh
Confidence 999999999764
|
| >3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.1e-10 Score=119.38 Aligned_cols=87 Identities=23% Similarity=0.415 Sum_probs=67.6
Q ss_pred cCeeeeccCceEEEEEEC-CCC---EEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCc----eEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGS---ILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEH----EKL 806 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~---~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~----~~~ 806 (832)
.+.||+|+||.||+|+.. ++. .||||+++.. .....+.|.+|++++.+++||||+++++++...+.. ..+
T Consensus 28 ~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~ 107 (323)
T 3qup_A 28 GRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKGRLPIPM 107 (323)
T ss_dssp EEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC-------CEE
T ss_pred eceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccccCCCccE
Confidence 678999999999999974 333 8999998643 233467899999999999999999999999876541 129
Q ss_pred EEEecCCCCCHHHHHhc
Q 003307 807 VISNYINAQSLAVYLQG 823 (832)
Q Consensus 807 lv~e~~~~GsL~~~l~~ 823 (832)
+||||+++|+|.+++..
T Consensus 108 ~v~e~~~~~~L~~~l~~ 124 (323)
T 3qup_A 108 VILPFMKHGDLHAFLLA 124 (323)
T ss_dssp EEEECCTTCBHHHHHHH
T ss_pred EEEEeccCCcHHHHHHh
Confidence 99999999999999964
|
| >2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=7.2e-10 Score=117.85 Aligned_cols=84 Identities=20% Similarity=0.353 Sum_probs=64.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|+.. +|+.||||+++... ....+.+.+|++++++++|||||++++++...+. .++|||||+
T Consensus 10 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~e~~~- 86 (317)
T 2pmi_A 10 LEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENK--LTLVFEFMD- 86 (317)
T ss_dssp ---------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTE--EEEEEECCC-
T ss_pred eeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCe--EEEEEEecC-
Confidence 568999999999999974 79999999986432 2234678899999999999999999999987776 999999999
Q ss_pred CCHHHHHhc
Q 003307 815 QSLAVYLQG 823 (832)
Q Consensus 815 GsL~~~l~~ 823 (832)
|+|.+++..
T Consensus 87 ~~L~~~l~~ 95 (317)
T 2pmi_A 87 NDLKKYMDS 95 (317)
T ss_dssp CBHHHHHHH
T ss_pred CCHHHHHHh
Confidence 699999864
|
| >3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ... | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-09 Score=115.03 Aligned_cols=92 Identities=27% Similarity=0.338 Sum_probs=73.6
Q ss_pred cCeeeeccCceEEEEEEC--C--CCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD--S--GSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~--~--g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|+||.||+|+.. + +..||||.+... .....+.|.+|++++++++||||++++++|...+. ..++||||
T Consensus 30 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~-~~~~v~e~ 108 (298)
T 3f66_A 30 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEG-SPLVVLPY 108 (298)
T ss_dssp EEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSS-CCEEEEEC
T ss_pred cceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCC-ceEEEEeC
Confidence 678999999999999863 2 236899998653 33445779999999999999999999999765442 38999999
Q ss_pred CCCCCHHHHHhcCC-Cccc
Q 003307 812 INAQSLAVYLQGKG-LVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~~-~l~w 829 (832)
+++|+|.++++... .+++
T Consensus 109 ~~~~~L~~~l~~~~~~~~~ 127 (298)
T 3f66_A 109 MKHGDLRNFIRNETHNPTV 127 (298)
T ss_dssp CTTCBHHHHHHCTTCCCCH
T ss_pred CCCCCHHHHHHhcccCCCH
Confidence 99999999997643 3444
|
| >3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-09 Score=115.19 Aligned_cols=90 Identities=19% Similarity=0.293 Sum_probs=76.7
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|+. .+|+.||||++.... ....+.+.+|++++.+++||||+++++++...+. .++||||+++
T Consensus 27 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~ 104 (303)
T 3a7i_A 27 LEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTK--LWIIMEYLGG 104 (303)
T ss_dssp EEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTE--EEEEEECCTT
T ss_pred hhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCe--EEEEEEeCCC
Confidence 56799999999999997 479999999985432 3345789999999999999999999999988776 9999999999
Q ss_pred CCHHHHHhcCCCccc
Q 003307 815 QSLAVYLQGKGLVLW 829 (832)
Q Consensus 815 GsL~~~l~~~~~l~w 829 (832)
|+|.+++.. +.++|
T Consensus 105 ~~L~~~~~~-~~~~~ 118 (303)
T 3a7i_A 105 GSALDLLEP-GPLDE 118 (303)
T ss_dssp EEHHHHHTT-SCCCH
T ss_pred CcHHHHHhc-CCCCH
Confidence 999999875 34444
|
| >1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=8.6e-10 Score=117.82 Aligned_cols=87 Identities=26% Similarity=0.431 Sum_probs=72.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEE--EEEEeccC-ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSIL--AVKRLREG-IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~v--AvK~l~~~-~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
...||+|+||.||+|+.. +|..+ |||+++.. .....+.+.+|++++.++ +||||+++++++...+. .++||||
T Consensus 30 ~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~--~~lv~e~ 107 (327)
T 1fvr_A 30 QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGY--LYLAIEY 107 (327)
T ss_dssp EEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTE--EEEEECC
T ss_pred eeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCc--eEEEEec
Confidence 678999999999999974 67654 99988643 233456799999999999 99999999999988776 9999999
Q ss_pred CCCCCHHHHHhcCC
Q 003307 812 INAQSLAVYLQGKG 825 (832)
Q Consensus 812 ~~~GsL~~~l~~~~ 825 (832)
+++|+|.++++..+
T Consensus 108 ~~~~~L~~~l~~~~ 121 (327)
T 1fvr_A 108 APHGNLLDFLRKSR 121 (327)
T ss_dssp CTTCBHHHHHHTTC
T ss_pred CCCCCHHHHHHhcc
Confidence 99999999998764
|
| >3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=9.7e-10 Score=122.20 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=77.8
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC---ceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE---HEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~---~~~~lv~e 810 (832)
...||+|+||.||+|+.. +|+.||||++... .....+.+.+|++++++++|||||++++++..... ...++|||
T Consensus 31 ~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e 110 (432)
T 3n9x_A 31 KHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDELYIVLE 110 (432)
T ss_dssp EEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEEEE
T ss_pred EEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCeEEEEEe
Confidence 678999999999999974 7899999999643 33345779999999999999999999999876531 23899999
Q ss_pred cCCCCCHHHHHhcCCCcccc
Q 003307 811 YINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~~l~w~ 830 (832)
||+ |+|.++++....+++.
T Consensus 111 ~~~-~~L~~~~~~~~~l~~~ 129 (432)
T 3n9x_A 111 IAD-SDLKKLFKTPIFLTEE 129 (432)
T ss_dssp CCS-EEHHHHHHSSCCCCHH
T ss_pred cCC-cCHHHHHhccCCCCHH
Confidence 998 6999999987777664
|
| >3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.3e-10 Score=121.48 Aligned_cols=92 Identities=11% Similarity=0.141 Sum_probs=77.7
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCCh--------hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIA--------KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLV 807 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~--------~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~l 807 (832)
...||+|+||.||+|+. .+|+.||||+++.... ...+.+.+|++++.+++|||||+++++|...+. .++
T Consensus 29 ~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~~--~~l 106 (335)
T 3dls_A 29 MSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQGF--FQL 106 (335)
T ss_dssp EEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSSE--EEE
T ss_pred EeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCCE--EEE
Confidence 57899999999999997 4899999999854321 123457889999999999999999999987776 999
Q ss_pred EEecCCCC-CHHHHHhcCCCcccc
Q 003307 808 ISNYINAQ-SLAVYLQGKGLVLWF 830 (832)
Q Consensus 808 v~e~~~~G-sL~~~l~~~~~l~w~ 830 (832)
||||+.+| +|.+++...+.++|.
T Consensus 107 v~e~~~~g~~l~~~~~~~~~l~~~ 130 (335)
T 3dls_A 107 VMEKHGSGLDLFAFIDRHPRLDEP 130 (335)
T ss_dssp EEECCTTSCBHHHHHHTCCCCCHH
T ss_pred EEEeCCCCccHHHHHHhcCCCCHH
Confidence 99999887 999999988777764
|
| >3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=9.3e-10 Score=118.42 Aligned_cols=91 Identities=13% Similarity=0.203 Sum_probs=78.2
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCC--CcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKH--PNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H--~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|...+|+.||||++... .....+.|.+|++++.+++| +||+++++++...+. .++||| +
T Consensus 14 ~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~--~~lv~e-~ 90 (343)
T 3dbq_A 14 LKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQY--IYMVME-C 90 (343)
T ss_dssp EEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSE--EEEEEC-C
T ss_pred EEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCE--EEEEEe-C
Confidence 6789999999999999888999999998543 33445779999999999987 999999999998776 999999 5
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
.+|+|.++++..+.++|.
T Consensus 91 ~~~~L~~~l~~~~~~~~~ 108 (343)
T 3dbq_A 91 GNIDLNSWLKKKKSIDPW 108 (343)
T ss_dssp CSEEHHHHHHHSCCCCHH
T ss_pred CCCCHHHHHHhcCCCCHH
Confidence 678999999988777653
|
| >2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.8e-10 Score=124.24 Aligned_cols=81 Identities=14% Similarity=0.282 Sum_probs=71.0
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChh-----------------hHHHHHHHHHHHhcCCCCcceeeeeEEEC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAK-----------------GKKEFAREVKKLGNIKHPNLVSLQGYYWG 799 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~-----------------~~~~f~~e~~~l~~~~H~niv~l~g~~~~ 799 (832)
...||+|+||.||+|+. +|+.||||++...... ..+.|.+|++++.+++||||+++++++..
T Consensus 36 ~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~ 114 (348)
T 2pml_X 36 IRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCEGIITN 114 (348)
T ss_dssp EEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCSEEEES
T ss_pred EEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEEEEEee
Confidence 67899999999999999 8999999998532111 11789999999999999999999999998
Q ss_pred CCCceEEEEEecCCCCCHHHH
Q 003307 800 PKEHEKLVISNYINAQSLAVY 820 (832)
Q Consensus 800 ~~~~~~~lv~e~~~~GsL~~~ 820 (832)
.+. .++||||+++|+|.++
T Consensus 115 ~~~--~~lv~e~~~~~~L~~~ 133 (348)
T 2pml_X 115 YDE--VYIIYEYMENDSILKF 133 (348)
T ss_dssp SSE--EEEEEECCTTCBSSEE
T ss_pred CCe--EEEEEeccCCCcHHHH
Confidence 776 9999999999999998
|
| >1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-09 Score=115.31 Aligned_cols=88 Identities=17% Similarity=0.278 Sum_probs=73.9
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCC-----------Cce
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK-----------EHE 804 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~-----------~~~ 804 (832)
...||+|+||.||+|+. .+|+.||||++... ....+.+.+|++++.+++||||++++++|.... ...
T Consensus 11 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (303)
T 1zy4_A 11 IAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAVKKKST 89 (303)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC------CEEE
T ss_pred hheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcccccCCc
Confidence 57899999999999997 48999999998543 234577999999999999999999999986531 224
Q ss_pred EEEEEecCCCCCHHHHHhcCC
Q 003307 805 KLVISNYINAQSLAVYLQGKG 825 (832)
Q Consensus 805 ~~lv~e~~~~GsL~~~l~~~~ 825 (832)
.++||||+++|+|.++++..+
T Consensus 90 ~~lv~e~~~~~~L~~~l~~~~ 110 (303)
T 1zy4_A 90 LFIQMEYCENGTLYDLIHSEN 110 (303)
T ss_dssp EEEEEECCCSCBHHHHHHHSC
T ss_pred eEEEEecCCCCCHHHhhhccc
Confidence 899999999999999998543
|
| >3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-09 Score=116.32 Aligned_cols=89 Identities=21% Similarity=0.388 Sum_probs=72.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+.. +|+.||||.+.... ..+++.+|++++.+++||||+++++++...+. .++||||+++|
T Consensus 34 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~~ 109 (314)
T 3com_A 34 LEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTD--LWIVMEYCGAG 109 (314)
T ss_dssp EEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTE--EEEEEECCTTE
T ss_pred heeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCE--EEEEeecCCCC
Confidence 567999999999999985 79999999986432 23678999999999999999999999987776 99999999999
Q ss_pred CHHHHHh-cCCCccc
Q 003307 816 SLAVYLQ-GKGLVLW 829 (832)
Q Consensus 816 sL~~~l~-~~~~l~w 829 (832)
+|.+++. ....+++
T Consensus 110 ~L~~~~~~~~~~~~~ 124 (314)
T 3com_A 110 SVSDIIRLRNKTLTE 124 (314)
T ss_dssp EHHHHHHHHTCCCCH
T ss_pred CHHHHHHhcCCCCCH
Confidence 9999997 3445554
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1e-09 Score=114.76 Aligned_cols=89 Identities=31% Similarity=0.527 Sum_probs=72.9
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhh-------HHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKG-------KKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~-------~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv 808 (832)
...||+|+||.||+|+. .+++.||||++....... .+.|.+|++++.+++||||+++++++... .++|
T Consensus 24 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~----~~lv 99 (287)
T 4f0f_A 24 EKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNP----PRMV 99 (287)
T ss_dssp EEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTT----TEEE
T ss_pred hhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCC----CeEE
Confidence 67899999999999998 489999999985332111 16799999999999999999999998533 3699
Q ss_pred EecCCCCCHHHHHhcCC-Cccc
Q 003307 809 SNYINAQSLAVYLQGKG-LVLW 829 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~-~l~w 829 (832)
|||+++|+|.+++..+. .++|
T Consensus 100 ~e~~~~~~L~~~l~~~~~~~~~ 121 (287)
T 4f0f_A 100 MEFVPCGDLYHRLLDKAHPIKW 121 (287)
T ss_dssp EECCTTCBHHHHHHCTTSCCCH
T ss_pred EEecCCCCHHHHHhcccCCccH
Confidence 99999999999887654 4555
|
| >2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... | Back alignment and structure |
|---|
Probab=98.96 E-value=9.3e-10 Score=116.85 Aligned_cols=89 Identities=29% Similarity=0.421 Sum_probs=74.2
Q ss_pred cCeeeeccCceEEEEEE------CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATL------DSGSILAVKRLREGI-AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv 808 (832)
.+.||+|+||.||+|+. .+++.||||+++... ....+.+.+|++++.++ +||||++++++|...+. ..++|
T Consensus 32 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~-~~~lv 110 (316)
T 2xir_A 32 GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG-PLMVI 110 (316)
T ss_dssp EEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTS-CCEEE
T ss_pred eeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEEecCCC-ceEEE
Confidence 67899999999999984 356899999996543 33456799999999999 79999999999876442 38999
Q ss_pred EecCCCCCHHHHHhcCCC
Q 003307 809 SNYINAQSLAVYLQGKGL 826 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~~ 826 (832)
|||+++|+|.++++..+.
T Consensus 111 ~e~~~~~~L~~~l~~~~~ 128 (316)
T 2xir_A 111 VEFCKFGNLSTYLRSKRN 128 (316)
T ss_dssp EECCTTEEHHHHHHTCTT
T ss_pred EEcCCCCcHHHHHHhccc
Confidence 999999999999987553
|
| >1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=98.96 E-value=3e-10 Score=122.83 Aligned_cols=91 Identities=25% Similarity=0.339 Sum_probs=76.5
Q ss_pred cCeeeeccCceEEEEEE----CCCCEEEEEEeccCC----hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEE
Q 003307 737 AEVIGRSCHGTLYKATL----DSGSILAVKRLREGI----AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLV 807 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~----~~g~~vAvK~l~~~~----~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~l 807 (832)
.+.||+|+||.||+|+. .+|+.||||+++... ....+.+.+|++++.++ +||||+++++++...+. .++
T Consensus 59 ~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~--~~l 136 (355)
T 1vzo_A 59 LKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK--LHL 136 (355)
T ss_dssp EEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE--EEE
T ss_pred EEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCce--EEE
Confidence 67899999999999997 378999999985421 12335678899999999 69999999999987776 999
Q ss_pred EEecCCCCCHHHHHhcCCCccc
Q 003307 808 ISNYINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 808 v~e~~~~GsL~~~l~~~~~l~w 829 (832)
|||||++|+|.+++...+.+++
T Consensus 137 v~e~~~~~~L~~~l~~~~~~~~ 158 (355)
T 1vzo_A 137 ILDYINGGELFTHLSQRERFTE 158 (355)
T ss_dssp EECCCCSCBHHHHHHHHSCCCH
T ss_pred EeecCCCCCHHHHHHHcCCCCH
Confidence 9999999999999987766665
|
| >2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=4.6e-10 Score=118.40 Aligned_cols=85 Identities=20% Similarity=0.293 Sum_probs=59.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|+. .+|+.||||++.... ....+++.+|++++.+++||||+++++++...+. .++||||+++
T Consensus 20 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~~ 97 (303)
T 2vwi_A 20 QEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDE--LWLVMKLLSG 97 (303)
T ss_dssp EEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSC--EEEEEECCTT
T ss_pred hheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCC--cEEEehhccC
Confidence 67899999999999996 478999999885432 2335678999999999999999999999998877 9999999999
Q ss_pred CCHHHHHhc
Q 003307 815 QSLAVYLQG 823 (832)
Q Consensus 815 GsL~~~l~~ 823 (832)
|+|.+++..
T Consensus 98 ~~L~~~l~~ 106 (303)
T 2vwi_A 98 GSVLDIIKH 106 (303)
T ss_dssp CBHHHHHHH
T ss_pred CchHHHHHH
Confidence 999999873
|
| >2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.2e-09 Score=117.09 Aligned_cols=86 Identities=29% Similarity=0.378 Sum_probs=73.7
Q ss_pred cCeeeeccCceEEEEEEC-CC-----CEEEEEEeccC-ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SG-----SILAVKRLREG-IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g-----~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv 808 (832)
.+.||+|+||.||+|+.. +| ..||||.+... .....+.+.+|++++.++ +||||++++++|...+. .++|
T Consensus 51 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~--~~lv 128 (333)
T 2i1m_A 51 GKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGP--VLVI 128 (333)
T ss_dssp EEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS--CEEE
T ss_pred eeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCCc--eEEE
Confidence 678999999999999963 33 48999999654 333456799999999999 89999999999988777 9999
Q ss_pred EecCCCCCHHHHHhcC
Q 003307 809 SNYINAQSLAVYLQGK 824 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~ 824 (832)
|||+++|+|.++++..
T Consensus 129 ~e~~~~g~L~~~l~~~ 144 (333)
T 2i1m_A 129 TEYCCYGDLLNFLRRK 144 (333)
T ss_dssp EECCTTEEHHHHHHHH
T ss_pred EecCCCCcHHHHHHHh
Confidence 9999999999999753
|
| >3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.8e-09 Score=113.69 Aligned_cols=88 Identities=22% Similarity=0.336 Sum_probs=69.9
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhc--CCCCcceeeeeEEECCC--CceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGN--IKHPNLVSLQGYYWGPK--EHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~--~~H~niv~l~g~~~~~~--~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+. +|+.||||++... ..+.+.+|.+++.. ++||||+++++++.... ....++||||+
T Consensus 13 ~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~lv~e~~ 88 (301)
T 3q4u_A 13 LECVGKGRYGEVWRGSW-QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYH 88 (301)
T ss_dssp EEEEEECSSEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEEEECCC
T ss_pred EEeeccCCCcEEEEEEE-CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEEehhhc
Confidence 67899999999999998 6899999998543 34556667777665 89999999999976532 12378999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.++++.. .++|
T Consensus 89 ~~g~L~~~l~~~-~~~~ 104 (301)
T 3q4u_A 89 EMGSLYDYLQLT-TLDT 104 (301)
T ss_dssp TTCBHHHHHTTC-CBCH
T ss_pred cCCCHHHHHhhc-ccCH
Confidence 999999999643 4554
|
| >2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* | Back alignment and structure |
|---|
Probab=98.95 E-value=7.7e-10 Score=115.47 Aligned_cols=89 Identities=24% Similarity=0.394 Sum_probs=73.2
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECC--------------C
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGP--------------K 801 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~--------------~ 801 (832)
.+.||+|+||.||+|+.. +|+.||||+++... +.+.+|++++.+++||||+++++++... .
T Consensus 16 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (284)
T 2a19_B 16 IELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSK 91 (284)
T ss_dssp EEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---------CCE
T ss_pred eeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccccccccC
Confidence 678999999999999985 89999999986543 3467899999999999999999988541 1
Q ss_pred CceEEEEEecCCCCCHHHHHhcC--CCccc
Q 003307 802 EHEKLVISNYINAQSLAVYLQGK--GLVLW 829 (832)
Q Consensus 802 ~~~~~lv~e~~~~GsL~~~l~~~--~~l~w 829 (832)
....++||||+++|+|.++++.. ..++|
T Consensus 92 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~ 121 (284)
T 2a19_B 92 TKCLFIQMEFCDKGTLEQWIEKRRGEKLDK 121 (284)
T ss_dssp EEEEEEEECCCCSCBHHHHHHHGGGSCCCH
T ss_pred cceEEEEEeccCCCCHHHHHhhccCCCCCH
Confidence 22379999999999999999754 34554
|
| >3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=98.95 E-value=8.6e-10 Score=119.92 Aligned_cols=92 Identities=28% Similarity=0.366 Sum_probs=74.1
Q ss_pred cCeeeeccCceEEEEEEC--CC--CEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD--SG--SILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~--~g--~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|+||.||+|+.. ++ ..||||.++.. .....+.|.+|++++++++|||||+++++|...+. ..++||||
T Consensus 94 ~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~-~~~lv~e~ 172 (373)
T 3c1x_A 94 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEG-SPLVVLPY 172 (373)
T ss_dssp EEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSS-CCEEEEEC
T ss_pred CcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCC-CeEEEEEC
Confidence 568999999999999863 33 46899998643 33446789999999999999999999999865432 37999999
Q ss_pred CCCCCHHHHHhcCC-Cccc
Q 003307 812 INAQSLAVYLQGKG-LVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~~-~l~w 829 (832)
|++|+|.++++..+ .++|
T Consensus 173 ~~~g~L~~~l~~~~~~~~~ 191 (373)
T 3c1x_A 173 MKHGDLRNFIRNETHNPTV 191 (373)
T ss_dssp CTTCBHHHHHHCTTCCCBH
T ss_pred CCCCCHHHHHhhcccCCCH
Confidence 99999999998654 3444
|
| >3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-09 Score=112.82 Aligned_cols=90 Identities=21% Similarity=0.338 Sum_probs=73.5
Q ss_pred cCeeeeccCceEEEEEEC----CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD----SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
...||+|+||.||+|+.. .+..||||.+... .....+.|.+|++++.+++||||+++++++... . .++||||
T Consensus 17 ~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-~--~~~v~e~ 93 (281)
T 3cc6_A 17 NRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEE-P--TWIIMEL 93 (281)
T ss_dssp EEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSS-S--CEEEEEC
T ss_pred EEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcCC-C--CEEEEec
Confidence 678999999999999863 2346999998654 334567899999999999999999999998643 3 6899999
Q ss_pred CCCCCHHHHHhcCC-Cccc
Q 003307 812 INAQSLAVYLQGKG-LVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~~-~l~w 829 (832)
+++|+|.++++..+ .+++
T Consensus 94 ~~~~~L~~~l~~~~~~~~~ 112 (281)
T 3cc6_A 94 YPYGELGHYLERNKNSLKV 112 (281)
T ss_dssp CTTCBHHHHHHHHTTTCCH
T ss_pred CCCCCHHHHHHhccccCCH
Confidence 99999999997543 3554
|
| >3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-09 Score=122.60 Aligned_cols=93 Identities=15% Similarity=0.181 Sum_probs=68.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC---ceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE---HEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~---~~~~lv~e 810 (832)
...||+|+||.||+|+.. +|+.||||++... .....+.+.+|++++.+++|||||+++++|..... ...++|||
T Consensus 58 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~lv~e 137 (458)
T 3rp9_A 58 RHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDELYVVLE 137 (458)
T ss_dssp CCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEEEC
T ss_pred eeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceEEEEEe
Confidence 678999999999999974 8999999998543 33345779999999999999999999999854321 23899999
Q ss_pred cCCCCCHHHHHhcCCCcccc
Q 003307 811 YINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~~l~w~ 830 (832)
||+ |+|.++++..+.+++.
T Consensus 138 ~~~-~~L~~~~~~~~~l~~~ 156 (458)
T 3rp9_A 138 IAD-SDFKKLFRTPVYLTEL 156 (458)
T ss_dssp CCS-EEHHHHHHSSCCCCHH
T ss_pred ccc-cchhhhcccCCCCCHH
Confidence 986 7999999887777653
|
| >3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-09 Score=114.99 Aligned_cols=86 Identities=22% Similarity=0.412 Sum_probs=67.5
Q ss_pred cCeeeeccCceEEEEEEC----CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCc---eEEE
Q 003307 737 AEVIGRSCHGTLYKATLD----SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEH---EKLV 807 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~---~~~l 807 (832)
.+.||+|+||.||+|+.. ++..||||+++.. .....+.|.+|++++.+++||||++++++|...+.. ..++
T Consensus 39 ~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~ 118 (313)
T 3brb_A 39 GKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMV 118 (313)
T ss_dssp EEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-------CEEE
T ss_pred ccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccccCCcccEE
Confidence 678999999999999863 3458999998643 333456799999999999999999999999865531 2599
Q ss_pred EEecCCCCCHHHHHh
Q 003307 808 ISNYINAQSLAVYLQ 822 (832)
Q Consensus 808 v~e~~~~GsL~~~l~ 822 (832)
||||+++|+|.+++.
T Consensus 119 v~e~~~~~~L~~~l~ 133 (313)
T 3brb_A 119 ILPFMKYGDLHTYLL 133 (313)
T ss_dssp EEECCTTCBHHHHHH
T ss_pred EEecccCCCHHHHHH
Confidence 999999999999995
|
| >2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.5e-09 Score=118.97 Aligned_cols=90 Identities=13% Similarity=0.186 Sum_probs=77.4
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCC--CCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREG--IAKGKKEFAREVKKLGNIK--HPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~--H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|...+|+.||||++... .....+.|.+|++++.+++ |||||++++++...+. .++||| +
T Consensus 61 ~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~--~~lv~E-~ 137 (390)
T 2zmd_A 61 LKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQY--IYMVME-C 137 (390)
T ss_dssp EEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSE--EEEEEE-C
T ss_pred EEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCE--EEEEEe-c
Confidence 6789999999999999878999999998543 3344578999999999996 5999999999998776 999999 6
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
.+|+|.+++...+.++|
T Consensus 138 ~~~~L~~~l~~~~~~~~ 154 (390)
T 2zmd_A 138 GNIDLNSWLKKKKSIDP 154 (390)
T ss_dssp CSEEHHHHHHHCSSCCH
T ss_pred CCCCHHHHHHhcCCCCH
Confidence 78899999998777665
|
| >3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-09 Score=114.66 Aligned_cols=91 Identities=20% Similarity=0.184 Sum_probs=72.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||+||+|+.. +|+.||||++... .......+..|+..+.++ +|||||+++++|...+. .++|||||
T Consensus 62 ~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~--~~lv~e~~ 139 (311)
T 3p1a_A 62 LSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGI--LYLQTELC 139 (311)
T ss_dssp EEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTE--EEEEEECC
T ss_pred eheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCE--EEEEEecc
Confidence 568999999999999985 8999999998543 233345566677666655 99999999999987776 99999999
Q ss_pred CCCCHHHHHhcCC-Ccccc
Q 003307 813 NAQSLAVYLQGKG-LVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~-~l~w~ 830 (832)
+|+|.+++...+ .++|.
T Consensus 140 -~~~L~~~~~~~~~~l~~~ 157 (311)
T 3p1a_A 140 -GPSLQQHCEAWGASLPEA 157 (311)
T ss_dssp -CCBHHHHHHHHCSCCCHH
T ss_pred -CCCHHHHHHhcCCCCCHH
Confidence 679999887543 46664
|
| >1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.7e-09 Score=112.62 Aligned_cols=84 Identities=25% Similarity=0.438 Sum_probs=70.8
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
...||+|+||.||+|+. .|+.||||.++... ..+.|.+|++++.+++||||+++++++...+. ..++||||+++|+
T Consensus 26 ~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~-~~~lv~e~~~~~~ 101 (278)
T 1byg_A 26 LQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKG-GLYIVTEYMAKGS 101 (278)
T ss_dssp EEEEEECSSCEEEEEEE-TTEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC---CCEEEECCCTTEE
T ss_pred EeEEecCCCceEEEEEE-cCCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCC-ceEEEEecCCCCC
Confidence 67899999999999987 48899999986543 35679999999999999999999999865432 3899999999999
Q ss_pred HHHHHhcC
Q 003307 817 LAVYLQGK 824 (832)
Q Consensus 817 L~~~l~~~ 824 (832)
|.+++...
T Consensus 102 L~~~l~~~ 109 (278)
T 1byg_A 102 LVDYLRSR 109 (278)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999754
|
| >2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.5e-09 Score=112.88 Aligned_cols=86 Identities=16% Similarity=0.335 Sum_probs=70.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC----hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI----AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~----~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|+||.||+|.. .+|+.||||+++... ....+.|.+|++++.+++||||+++++++...+....++||||
T Consensus 10 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~ 89 (305)
T 2wtk_C 10 GDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMYMVMEY 89 (305)
T ss_dssp CCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CEEEEEEC
T ss_pred eeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeEEEEehh
Confidence 67899999999999997 478999999985431 2235779999999999999999999999865443348999999
Q ss_pred CCCCCHHHHHhc
Q 003307 812 INAQSLAVYLQG 823 (832)
Q Consensus 812 ~~~GsL~~~l~~ 823 (832)
+++| |.+++..
T Consensus 90 ~~~~-l~~~~~~ 100 (305)
T 2wtk_C 90 CVCG-MQEMLDS 100 (305)
T ss_dssp CSEE-HHHHHHH
T ss_pred ccCC-HHHHHHh
Confidence 9987 7777765
|
| >2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-09 Score=114.44 Aligned_cols=86 Identities=19% Similarity=0.286 Sum_probs=67.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECC------------CCc
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGP------------KEH 803 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~------------~~~ 803 (832)
...||+|+||.||+|+.. +|+.||||++........+.+.+|++++.+++||||+++++++... +..
T Consensus 16 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~ 95 (320)
T 2i6l_A 16 LKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTELN 95 (320)
T ss_dssp EEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----CCSCS
T ss_pred EEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccccccccC
Confidence 568999999999999985 6999999998766555667899999999999999999999988432 112
Q ss_pred eEEEEEecCCCCCHHHHHhc
Q 003307 804 EKLVISNYINAQSLAVYLQG 823 (832)
Q Consensus 804 ~~~lv~e~~~~GsL~~~l~~ 823 (832)
..++||||++ |+|.++++.
T Consensus 96 ~~~lv~e~~~-~~L~~~~~~ 114 (320)
T 2i6l_A 96 SVYIVQEYME-TDLANVLEQ 114 (320)
T ss_dssp EEEEEEECCS-EEHHHHHTT
T ss_pred ceeEEeeccC-CCHHHHhhc
Confidence 4899999998 699999865
|
| >1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C | Back alignment and structure |
|---|
Probab=98.91 E-value=1.7e-09 Score=118.75 Aligned_cols=88 Identities=18% Similarity=0.249 Sum_probs=70.2
Q ss_pred CeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHH-hcCCCCcceeeeeEEEC--CCCceEEEEEecCC
Q 003307 738 EVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKL-GNIKHPNLVSLQGYYWG--PKEHEKLVISNYIN 813 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l-~~~~H~niv~l~g~~~~--~~~~~~~lv~e~~~ 813 (832)
.+||+|+||+||+|+.. +|+.||||+++.. ..+.+|++++ +..+|||||+++++|.. .+....++|||||+
T Consensus 68 ~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~E~~~ 142 (400)
T 1nxk_A 68 QVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLD 142 (400)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCC
T ss_pred ceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEEEEeCC
Confidence 57999999999999974 7999999998632 3567888887 45589999999998864 12223899999999
Q ss_pred CCCHHHHHhcCC--Ccccc
Q 003307 814 AQSLAVYLQGKG--LVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~~~--~l~w~ 830 (832)
+|+|.++++..+ .++|.
T Consensus 143 gg~L~~~l~~~~~~~l~~~ 161 (400)
T 1nxk_A 143 GGELFSRIQDRGDQAFTER 161 (400)
T ss_dssp SEEHHHHHHCC---CCBHH
T ss_pred CCcHHHHHHHhCCCCCCHH
Confidence 999999998754 36653
|
| >2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.1e-09 Score=117.07 Aligned_cols=89 Identities=11% Similarity=-0.003 Sum_probs=74.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|+. .+|+.||||.+..... .+.+.+|++++.++ +||||+++++++...+. .++||||+ +
T Consensus 14 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~--~~lv~e~~-~ 88 (330)
T 2izr_A 14 GKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKY--NAMVLELL-G 88 (330)
T ss_dssp EEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTE--EEEEEECC-C
T ss_pred EEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCc--cEEEEEeC-C
Confidence 67899999999999997 5899999999854322 24588999999999 99999999999988776 89999999 9
Q ss_pred CCHHHHHhcC-CCcccc
Q 003307 815 QSLAVYLQGK-GLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~-~~l~w~ 830 (832)
|+|.++++.. +.++|.
T Consensus 89 ~~L~~~~~~~~~~~~~~ 105 (330)
T 2izr_A 89 PSLEDLFDLCDRTFSLK 105 (330)
T ss_dssp CBHHHHHHHTTTCCCHH
T ss_pred CCHHHHHHHcCCCCCHH
Confidence 9999999863 456653
|
| >3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.4e-09 Score=118.06 Aligned_cols=92 Identities=24% Similarity=0.366 Sum_probs=69.1
Q ss_pred chhhhcccccCeeeeccCceEEEEEEC---CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCce
Q 003307 728 TAEELSHAPAEVIGRSCHGTLYKATLD---SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHE 804 (832)
Q Consensus 728 ~~~~l~~~~~~~iG~G~~g~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~ 804 (832)
.+++.....+..||+|+||.||+|+.. +++.||||++..... ...+.+|++++++++|||||+++++|.......
T Consensus 17 ~~~~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~ 94 (405)
T 3rgf_A 17 RVEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI--SMSACREIALLRELKHPNVISLQKVFLSHADRK 94 (405)
T ss_dssp CHHHHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC--CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTE
T ss_pred hhhhhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC--CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCe
Confidence 345555555778999999999999964 678999999964322 356889999999999999999999997544445
Q ss_pred EEEEEecCCCCCHHHHHh
Q 003307 805 KLVISNYINAQSLAVYLQ 822 (832)
Q Consensus 805 ~~lv~e~~~~GsL~~~l~ 822 (832)
.++||||++ |+|.+++.
T Consensus 95 ~~lv~e~~~-~~l~~~~~ 111 (405)
T 3rgf_A 95 VWLLFDYAE-HDLWHIIK 111 (405)
T ss_dssp EEEEEECCS-EEHHHHHH
T ss_pred EEEEEeCCC-CCHHHHHH
Confidence 999999998 58888875
|
| >3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=9.8e-10 Score=117.26 Aligned_cols=91 Identities=19% Similarity=0.311 Sum_probs=72.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCE----EEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSI----LAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~----vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
...||+|+||.||+|+. .+|+. ||+|.+.... ....+.+.+|+.++++++|||||+++++|.. +. .++|+|
T Consensus 18 ~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~--~~~v~e 94 (325)
T 3kex_A 18 LKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPG-SS--LQLVTQ 94 (325)
T ss_dssp EEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECB-SS--EEEEEE
T ss_pred eeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcC-Cc--cEEEEE
Confidence 67899999999999996 35554 7888774332 2223567899999999999999999999863 34 899999
Q ss_pred cCCCCCHHHHHhcC-CCcccc
Q 003307 811 YINAQSLAVYLQGK-GLVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~-~~l~w~ 830 (832)
|+++|+|.++++.. +.++|.
T Consensus 95 ~~~~~~L~~~l~~~~~~~~~~ 115 (325)
T 3kex_A 95 YLPLGSLLDHVRQHRGALGPQ 115 (325)
T ss_dssp CCTTCBSHHHHHSSGGGSCTT
T ss_pred eCCCCCHHHHHHHccccCCHH
Confidence 99999999999865 355553
|
| >1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.3e-09 Score=113.08 Aligned_cols=88 Identities=22% Similarity=0.323 Sum_probs=73.2
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhc--CCCCcceeeeeEEECCCCc--eEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGN--IKHPNLVSLQGYYWGPKEH--EKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~--~~H~niv~l~g~~~~~~~~--~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+. +|+.||||++... ..+.+.+|++++.. ++||||+++++++...... ..++||||+
T Consensus 47 ~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~ 122 (342)
T 1b6c_B 47 QESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYH 122 (342)
T ss_dssp EEEEEEETTEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEEEEECCC
T ss_pred EeeecCCCCcEEEEEEE-cCccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeEEEEeec
Confidence 67899999999999998 5899999998543 34668889988887 7999999999999876511 389999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.++++.. .++|
T Consensus 123 ~~g~L~~~l~~~-~~~~ 138 (342)
T 1b6c_B 123 EHGSLFDYLNRY-TVTV 138 (342)
T ss_dssp TTCBHHHHHHHC-CBCH
T ss_pred CCCcHHHHHhcc-CccH
Confidence 999999999764 3444
|
| >3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=3.4e-09 Score=111.59 Aligned_cols=88 Identities=18% Similarity=0.263 Sum_probs=71.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHH-hcCCCCcceeeeeEEEC--CCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKL-GNIKHPNLVSLQGYYWG--PKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l-~~~~H~niv~l~g~~~~--~~~~~~~lv~e~~ 812 (832)
.++||+|+||.||+|+. .+|+.||||+++.. ..+.+|++++ +..+||||+++++++.. .+....++||||+
T Consensus 23 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~ 97 (299)
T 3m2w_A 23 SQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECL 97 (299)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEECCC
T ss_pred CcccccCCCeEEEEEEEcCCCcEEEEEEeccc-----HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEEEEeec
Confidence 36799999999999997 48999999998642 4567888887 66799999999999875 1122389999999
Q ss_pred CCCCHHHHHhcCC--Cccc
Q 003307 813 NAQSLAVYLQGKG--LVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~--~l~w 829 (832)
++|+|.+++.... .+++
T Consensus 98 ~~~~L~~~l~~~~~~~~~~ 116 (299)
T 3m2w_A 98 DGGELFSRIQDRGDQAFTE 116 (299)
T ss_dssp CSCBHHHHHHHCTTCCCBH
T ss_pred CCCcHHHHHHhccCCCCCH
Confidence 9999999998754 4554
|
| >2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.4e-09 Score=114.25 Aligned_cols=87 Identities=18% Similarity=0.373 Sum_probs=73.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCC----CceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPK----EHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~----~~~~~lv~e 810 (832)
.+.||+|+||.||+|+. .+|+.||||++..... ..+.+.+|++++.++ +||||+++++++.... ....++|||
T Consensus 29 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e 107 (326)
T 2x7f_A 29 VELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVME 107 (326)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-TTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCCCEEEEEEE
T ss_pred EEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc-cHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCccccceEEEEEE
Confidence 67899999999999997 4899999999864322 346789999999998 8999999999997632 224899999
Q ss_pred cCCCCCHHHHHhcC
Q 003307 811 YINAQSLAVYLQGK 824 (832)
Q Consensus 811 ~~~~GsL~~~l~~~ 824 (832)
|+++|+|.+++...
T Consensus 108 ~~~~~~L~~~l~~~ 121 (326)
T 2x7f_A 108 FCGAGSVTDLIKNT 121 (326)
T ss_dssp CCTTEEHHHHHHHS
T ss_pred cCCCCcHHHHHHhc
Confidence 99999999999864
|
| >3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.8e-09 Score=115.36 Aligned_cols=91 Identities=19% Similarity=0.239 Sum_probs=76.0
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+.. +|+.||||++... ......++.+|++++.+++ ||||+++++++...+. .++|||||
T Consensus 34 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~--~~lv~e~~ 111 (327)
T 3lm5_A 34 SKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSE--IILILEYA 111 (327)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSE--EEEEEECC
T ss_pred cceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCe--EEEEEEec
Confidence 468999999999999975 7999999998543 2234678999999999994 6999999999987776 99999999
Q ss_pred CCCCHHHHHhcC--CCccc
Q 003307 813 NAQSLAVYLQGK--GLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~--~~l~w 829 (832)
++|+|.+++... +.++|
T Consensus 112 ~~~~L~~~~~~~~~~~~~~ 130 (327)
T 3lm5_A 112 AGGEIFSLCLPELAEMVSE 130 (327)
T ss_dssp TTEEGGGGGSSCC-CCCCH
T ss_pred CCCcHHHHHHHhcccCCCH
Confidence 999999998653 44554
|
| >2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... | Back alignment and structure |
|---|
Probab=98.88 E-value=2.9e-09 Score=111.99 Aligned_cols=85 Identities=25% Similarity=0.450 Sum_probs=71.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+.. +|+.||||+++... ....+.+.+|++++.+++||||+++++++...+. .++||||++
T Consensus 8 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~--~~lv~e~~~ 85 (299)
T 2r3i_A 8 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENK--LYLVFEFLH 85 (299)
T ss_dssp EEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTE--EEEEEECCS
T ss_pred hhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCc--eEEEEEccc
Confidence 568999999999999985 89999999985432 2224678899999999999999999999988776 999999998
Q ss_pred CCCHHHHHhcC
Q 003307 814 AQSLAVYLQGK 824 (832)
Q Consensus 814 ~GsL~~~l~~~ 824 (832)
|+|.+++...
T Consensus 86 -~~L~~~~~~~ 95 (299)
T 2r3i_A 86 -QDLKKFMDAS 95 (299)
T ss_dssp -EEHHHHHHHT
T ss_pred -CCHHHHHHhh
Confidence 6999999765
|
| >3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-09 Score=116.65 Aligned_cols=90 Identities=24% Similarity=0.417 Sum_probs=72.4
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChh-hHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAK-GKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||.||+|+.. +|+.||||+++..... ....+.+|++++.+++|||||++++++...+. .++|||||+
T Consensus 7 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~- 83 (324)
T 3mtl_A 7 LDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKS--LTLVFEYLD- 83 (324)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSC--EEEEEECCS-
T ss_pred EEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCE--EEEEecccc-
Confidence 567999999999999985 8999999998543221 12246689999999999999999999998777 999999998
Q ss_pred CCHHHHHhcCC-Cccc
Q 003307 815 QSLAVYLQGKG-LVLW 829 (832)
Q Consensus 815 GsL~~~l~~~~-~l~w 829 (832)
|+|.+++...+ .+++
T Consensus 84 ~~l~~~~~~~~~~~~~ 99 (324)
T 3mtl_A 84 KDLKQYLDDCGNIINM 99 (324)
T ss_dssp EEHHHHHHHTTTCCCH
T ss_pred cCHHHHHHhcCCCCCH
Confidence 69999987654 3444
|
| >1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=98.88 E-value=2.4e-09 Score=116.22 Aligned_cols=91 Identities=16% Similarity=0.255 Sum_probs=68.1
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC----ceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE----HEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~----~~~~lv~ 809 (832)
...||+|+||.||+|+. .+|+.||||++... .....+.+.+|++++++++|||||++++++...+. ...++||
T Consensus 30 ~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~ 109 (367)
T 1cm8_A 30 LQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVM 109 (367)
T ss_dssp EEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEEEE
T ss_pred eEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCceEEEEE
Confidence 56899999999999997 48999999998543 23345678999999999999999999999976532 1369999
Q ss_pred ecCCCCCHHHHHhcCCCccc
Q 003307 810 NYINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~~l~w 829 (832)
||| +++|.++++.. .+++
T Consensus 110 e~~-~~~L~~~~~~~-~l~~ 127 (367)
T 1cm8_A 110 PFM-GTDLGKLMKHE-KLGE 127 (367)
T ss_dssp ECC-SEEHHHHHHHC-CCCH
T ss_pred ecC-CCCHHHHHhcC-CCCH
Confidence 999 78999998763 3443
|
| >3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.6e-09 Score=114.40 Aligned_cols=93 Identities=22% Similarity=0.276 Sum_probs=75.7
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCC-CCcceeeeeEEEC------CCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIK-HPNLVSLQGYYWG------PKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~------~~~~~~~lv 808 (832)
...||+|+||.||+|+. .+|+.||||++........+.+.+|++++.++. |||||++++++.. ......++|
T Consensus 33 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~~~lv 112 (337)
T 3ll6_A 33 RRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAEFLLL 112 (337)
T ss_dssp EEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSEEEEEE
T ss_pred EEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCceEEEE
Confidence 67899999999999997 489999999986655556678999999999996 9999999999852 122247999
Q ss_pred EecCCCCCHHHHHhc---CCCcccc
Q 003307 809 SNYINAQSLAVYLQG---KGLVLWF 830 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~---~~~l~w~ 830 (832)
+||++ |+|.++++. .+.++|.
T Consensus 113 ~e~~~-g~L~~~l~~~~~~~~~~~~ 136 (337)
T 3ll6_A 113 TELCK-GQLVEFLKKMESRGPLSCD 136 (337)
T ss_dssp EECCS-EEHHHHHHHHHTTCSCCHH
T ss_pred EEecC-CCHHHHHHHhhccCCCCHH
Confidence 99997 799998864 4456653
|
| >3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.2e-09 Score=116.43 Aligned_cols=92 Identities=18% Similarity=0.309 Sum_probs=73.6
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCC-----------hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCC---C
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGI-----------AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK---E 802 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~-----------~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~---~ 802 (832)
...||+|+||.||+|+..+|..||||++.... ....+.|.+|++++.+++||||+++++++...+ .
T Consensus 27 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 106 (362)
T 3pg1_A 27 QRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLRDIFVHFEEPAM 106 (362)
T ss_dssp EEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEEEECCTTTC
T ss_pred eEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccceeeeEEeccCCCc
Confidence 67899999999999998789999999884321 112367999999999999999999999986432 2
Q ss_pred ceEEEEEecCCCCCHHHHHhcCC-Cccc
Q 003307 803 HEKLVISNYINAQSLAVYLQGKG-LVLW 829 (832)
Q Consensus 803 ~~~~lv~e~~~~GsL~~~l~~~~-~l~w 829 (832)
...++||||++ |+|.++++..+ .++|
T Consensus 107 ~~~~lv~e~~~-~~l~~~~~~~~~~~~~ 133 (362)
T 3pg1_A 107 HKLYLVTELMR-TDLAQVIHDQRIVISP 133 (362)
T ss_dssp CEEEEEEECCS-EEHHHHHHCTTSCCCH
T ss_pred ceEEEEEccCC-CCHHHHHHhcccCCCH
Confidence 24799999999 68999887654 4554
|
| >2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4.7e-09 Score=122.63 Aligned_cols=91 Identities=18% Similarity=0.248 Sum_probs=74.8
Q ss_pred cCeeeeccCceEEEEEEC----CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD----SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|+||.||+|+.. .+..||||+++.. .....+.|.+|+.++++++|||||+++|++.. +. .++||||
T Consensus 395 ~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~-~~--~~lv~E~ 471 (656)
T 2j0j_A 395 GRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE-NP--VWIIMEL 471 (656)
T ss_dssp EEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SS--CEEEEEC
T ss_pred eeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec-Cc--eEEEEEc
Confidence 578999999999999873 3567999998653 33345779999999999999999999999853 44 7999999
Q ss_pred CCCCCHHHHHhcCC-Ccccc
Q 003307 812 INAQSLAVYLQGKG-LVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~-~l~w~ 830 (832)
|++|+|.++++.++ .++|.
T Consensus 472 ~~~g~L~~~l~~~~~~l~~~ 491 (656)
T 2j0j_A 472 CTLGELRSFLQVRKFSLDLA 491 (656)
T ss_dssp CTTCBHHHHHHHTTTTCCHH
T ss_pred CCCCcHHHHHHhccCCCCHH
Confidence 99999999998654 45553
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.9e-09 Score=126.38 Aligned_cols=92 Identities=20% Similarity=0.228 Sum_probs=77.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
..+||+|+||.||+|+.. +|+.||||+++... ....+.+..|.+++..+ +||+|+++++++.+.+. .++||||
T Consensus 346 ~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~--~~lV~E~ 423 (674)
T 3pfq_A 346 LMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDR--LYFVMEY 423 (674)
T ss_dssp EEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSE--EEEEEEC
T ss_pred EEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCE--EEEEEeC
Confidence 578999999999999974 78999999986421 12345688999999987 79999999999987766 9999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
|++|+|.++++..+.+++.
T Consensus 424 ~~gg~L~~~l~~~~~~~~~ 442 (674)
T 3pfq_A 424 VNGGDLMYHIQQVGRFKEP 442 (674)
T ss_dssp CCSCBHHHHHHHHSSCCHH
T ss_pred cCCCcHHHHHHhcCCCCHH
Confidence 9999999999987777654
|
| >3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ... | Back alignment and structure |
|---|
Probab=98.86 E-value=6.2e-09 Score=111.24 Aligned_cols=84 Identities=23% Similarity=0.341 Sum_probs=72.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|+. .+|+.||||+++... .+.+.+|++++.+++ ||||+++++++........++||||+++
T Consensus 41 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e~~~~ 117 (330)
T 3nsz_A 41 VRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNN 117 (330)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEECSCC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEECCCC
T ss_pred EEEecccCCeEEEEEEECCCCcEEEEEEecccc---hHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEeccCc
Confidence 67899999999999987 589999999996432 467899999999997 9999999999987443348999999999
Q ss_pred CCHHHHHhc
Q 003307 815 QSLAVYLQG 823 (832)
Q Consensus 815 GsL~~~l~~ 823 (832)
|+|.++++.
T Consensus 118 ~~l~~~~~~ 126 (330)
T 3nsz_A 118 TDFKQLYQT 126 (330)
T ss_dssp CCHHHHGGG
T ss_pred hhHHHHHHh
Confidence 999988753
|
| >3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ... | Back alignment and structure |
|---|
Probab=98.85 E-value=4e-09 Score=110.46 Aligned_cols=88 Identities=24% Similarity=0.332 Sum_probs=71.3
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||.||+|+.. ..||||+++.. .....+.|.+|++++++++||||+++++++.. +. .++||||+++
T Consensus 29 ~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~--~~lv~e~~~~ 103 (289)
T 3og7_A 29 GQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA-PQ--LAIVTQWCEG 103 (289)
T ss_dssp EEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SS--CEEEEECCCE
T ss_pred eeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeeccC-Cc--cEEEEEecCC
Confidence 678999999999999864 46999998643 33445779999999999999999999997753 34 7999999999
Q ss_pred CCHHHHHhcC-CCccc
Q 003307 815 QSLAVYLQGK-GLVLW 829 (832)
Q Consensus 815 GsL~~~l~~~-~~l~w 829 (832)
|+|.++++.. ..++|
T Consensus 104 ~~L~~~l~~~~~~~~~ 119 (289)
T 3og7_A 104 SSLYHHLHASETKFEM 119 (289)
T ss_dssp EEHHHHHTTC---CCH
T ss_pred CcHHHHHhhccCCCCH
Confidence 9999999754 34554
|
| >3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=98.85 E-value=6.5e-09 Score=112.62 Aligned_cols=85 Identities=20% Similarity=0.207 Sum_probs=73.6
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCC-----CCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIK-----HPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~-----H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
...||+|+||.||+|+. .+|+.||||+++.. ....+.+..|++++.+++ |||||++++++...+. .++|||
T Consensus 40 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~~--~~lv~e 116 (360)
T 3llt_A 40 IRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYYDH--MCLIFE 116 (360)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETTE--EEEEEC
T ss_pred EEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeECCe--eEEEEc
Confidence 57899999999999998 58999999999643 334567888999999886 9999999999988776 999999
Q ss_pred cCCCCCHHHHHhcCC
Q 003307 811 YINAQSLAVYLQGKG 825 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~ 825 (832)
|+ +|+|.+++....
T Consensus 117 ~~-~~~L~~~~~~~~ 130 (360)
T 3llt_A 117 PL-GPSLYEIITRNN 130 (360)
T ss_dssp CC-CCBHHHHHHHTT
T ss_pred CC-CCCHHHHHHhcC
Confidence 99 899999998654
|
| >3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.1e-09 Score=114.71 Aligned_cols=87 Identities=18% Similarity=0.402 Sum_probs=65.8
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+. .+|+.||||++... .....+.+.+|+.++.+++ |||||++++++...+....++|||||
T Consensus 14 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~lv~e~~ 93 (388)
T 3oz6_A 14 VKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVYLVFDYM 93 (388)
T ss_dssp EEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEEEEEECC
T ss_pred EEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEEEEeccc
Confidence 56799999999999997 48999999998543 3344567889999999997 99999999999865543489999999
Q ss_pred CCCCHHHHHhcC
Q 003307 813 NAQSLAVYLQGK 824 (832)
Q Consensus 813 ~~GsL~~~l~~~ 824 (832)
+ |+|.++++..
T Consensus 94 ~-~~L~~~~~~~ 104 (388)
T 3oz6_A 94 E-TDLHAVIRAN 104 (388)
T ss_dssp S-EEHHHHHHHT
T ss_pred C-cCHHHHHHcC
Confidence 8 6999998764
|
| >1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=98.85 E-value=3.4e-09 Score=114.18 Aligned_cols=90 Identities=21% Similarity=0.400 Sum_probs=72.2
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChh-----hHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAK-----GKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~-----~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
...||+|+||.||+|+.. +|+.||||++...... ..+.+.+|++++.+++|||||++++++...+. .++|||
T Consensus 15 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e 92 (346)
T 1ua2_A 15 LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSN--ISLVFD 92 (346)
T ss_dssp EEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTC--CEEEEE
T ss_pred EeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCc--eEEEEE
Confidence 578999999999999974 7999999998543211 12468899999999999999999999987777 999999
Q ss_pred cCCCCCHHHHHhcCC-Cccc
Q 003307 811 YINAQSLAVYLQGKG-LVLW 829 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~-~l~w 829 (832)
||++ +|.+++.... .+++
T Consensus 93 ~~~~-~l~~~~~~~~~~~~~ 111 (346)
T 1ua2_A 93 FMET-DLEVIIKDNSLVLTP 111 (346)
T ss_dssp CCSE-EHHHHHTTCCSSCCS
T ss_pred cCCC-CHHHHHHhcCcCCCH
Confidence 9996 8999887653 4554
|
| >3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-09 Score=119.10 Aligned_cols=90 Identities=16% Similarity=0.167 Sum_probs=69.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC---ChhhHHHHHHHH---HHHhcCCCCcceeee-------eEEECCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG---IAKGKKEFAREV---KKLGNIKHPNLVSLQ-------GYYWGPKE 802 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~f~~e~---~~l~~~~H~niv~l~-------g~~~~~~~ 802 (832)
.+.||+|+||.||+|+. .+|+.||||++... .....+.|.+|+ +.+++++|||||+++ +++...+.
T Consensus 78 ~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~~~~~~~ 157 (377)
T 3byv_A 78 GTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQK 157 (377)
T ss_dssp EEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEEEECTTS
T ss_pred cceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhhhhccCC
Confidence 67899999999999996 57999999998532 333457799999 566677899999998 55554321
Q ss_pred ----------c-----eEEEEEecCCCCCHHHHHhcCCCc
Q 003307 803 ----------H-----EKLVISNYINAQSLAVYLQGKGLV 827 (832)
Q Consensus 803 ----------~-----~~~lv~e~~~~GsL~~~l~~~~~l 827 (832)
. ..++||||| +|+|.++++..+.+
T Consensus 158 ~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~ 196 (377)
T 3byv_A 158 KKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSH 196 (377)
T ss_dssp CSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHT
T ss_pred ccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhcccc
Confidence 0 178999999 68999999864433
|
| >3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=98.84 E-value=6.4e-09 Score=111.46 Aligned_cols=88 Identities=19% Similarity=0.272 Sum_probs=69.9
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcC--CCCcceeeeeEEECCCC--ceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNI--KHPNLVSLQGYYWGPKE--HEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~--~H~niv~l~g~~~~~~~--~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+.. |+.||||++... ....+.+|.+++... +||||+++++++..... ...++|||||
T Consensus 42 ~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~ 117 (337)
T 3mdy_A 42 VKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT---EEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLITDYH 117 (337)
T ss_dssp EEEEEEETTEEEEEEEET-TEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEEEEEECCC
T ss_pred EeEeecCCCeEEEEEEEC-CceEEEEEEecc---ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCceEEEEecc
Confidence 678999999999999985 899999998533 234556666666654 99999999999987632 2389999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.++++.. .++|
T Consensus 118 ~~g~L~~~l~~~-~~~~ 133 (337)
T 3mdy_A 118 ENGSLYDYLKST-TLDA 133 (337)
T ss_dssp TTCBHHHHHHHC-CBCH
T ss_pred CCCcHHHHhhcc-CCCH
Confidence 999999999764 3444
|
| >3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=4.8e-09 Score=111.21 Aligned_cols=90 Identities=13% Similarity=0.186 Sum_probs=77.4
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCC--CCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREG--IAKGKKEFAREVKKLGNIK--HPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~--H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
...||+|+||.||+|+..+|+.||||++... .....+.|.+|++++.+++ |+||+++++++...+. .++||| +
T Consensus 33 ~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~--~~lv~e-~ 109 (313)
T 3cek_A 33 LKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQY--IYMVME-C 109 (313)
T ss_dssp EEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSE--EEEEEC-C
T ss_pred EEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCE--EEEEEe-c
Confidence 6789999999999999888999999998543 3344578999999999997 5999999999998776 999999 6
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
.+|+|.+++...+.+++
T Consensus 110 ~~~~L~~~l~~~~~~~~ 126 (313)
T 3cek_A 110 GNIDLNSWLKKKKSIDP 126 (313)
T ss_dssp CSEEHHHHHHHCSSCCH
T ss_pred CCCcHHHHHHhcCCCCH
Confidence 77899999998777665
|
| >3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A | Back alignment and structure |
|---|
Probab=98.84 E-value=8.2e-09 Score=107.99 Aligned_cols=91 Identities=20% Similarity=0.251 Sum_probs=70.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC-Chhh-HHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG-IAKG-KKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-~~~~-~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+. .+|+.||||+++.. .... .+.+.++...++.++||||+++++++...+. .++||||++
T Consensus 12 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~--~~lv~e~~~ 89 (290)
T 3fme_A 12 IMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGD--VWICMELMD 89 (290)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSS--EEEEEECCS
T ss_pred HHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCC--EEEEEehhc
Confidence 67899999999999997 58999999998643 2222 3334555556888999999999999998777 999999998
Q ss_pred CCCHHHHHhc----CCCcccc
Q 003307 814 AQSLAVYLQG----KGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~----~~~l~w~ 830 (832)
|+|.++++. ...++|.
T Consensus 90 -~~l~~~l~~~~~~~~~~~~~ 109 (290)
T 3fme_A 90 -TSLDKFYKQVIDKGQTIPED 109 (290)
T ss_dssp -EEHHHHHHHHHHTTCCCCHH
T ss_pred -cchHHHHHHHHhcCCCCCHH
Confidence 588887753 4456553
|
| >2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-09 Score=116.14 Aligned_cols=92 Identities=18% Similarity=0.260 Sum_probs=71.7
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCCh------hhHHHHHHHHHHHhcC----CCCcceeeeeEEECCCCceE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIA------KGKKEFAREVKKLGNI----KHPNLVSLQGYYWGPKEHEK 805 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~------~~~~~f~~e~~~l~~~----~H~niv~l~g~~~~~~~~~~ 805 (832)
.+.||+|+||.||+|+. .+|+.||||++..... .....+.+|++++.++ +||||+++++++...+. .
T Consensus 36 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~~~~~--~ 113 (312)
T 2iwi_A 36 GPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFETQEG--F 113 (312)
T ss_dssp EEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC-------C
T ss_pred eeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEecCCe--E
Confidence 67899999999999987 4899999999854322 1223466799999888 89999999999987776 8
Q ss_pred EEEEec-CCCCCHHHHHhcCCCcccc
Q 003307 806 LVISNY-INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 806 ~lv~e~-~~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|| +++|+|.+++..++.++|.
T Consensus 114 ~~v~e~~~~~~~L~~~l~~~~~~~~~ 139 (312)
T 2iwi_A 114 MLVLERPLPAQDLFDYITEKGPLGEG 139 (312)
T ss_dssp EEEEECCSSEEEHHHHHHHHCSCCHH
T ss_pred EEEEEecCCCCCHHHHHHhcCCCCHH
Confidence 999999 8999999999887766653
|
| >3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.9e-09 Score=111.27 Aligned_cols=90 Identities=24% Similarity=0.385 Sum_probs=73.2
Q ss_pred cCeeeeccCceEEEEEE-CCCCE----EEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSI----LAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~----vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
...||+|+||.||+|+. .+|+. ||+|.+... .....+.|.+|++++.+++||||++++++|.... .++|+|
T Consensus 20 ~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~---~~~v~~ 96 (327)
T 3lzb_A 20 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST---VQLITQ 96 (327)
T ss_dssp EEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS---EEEEEC
T ss_pred EEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC---ceEEEE
Confidence 67899999999999996 35554 577777433 3345678999999999999999999999998654 789999
Q ss_pred cCCCCCHHHHHhcC-CCccc
Q 003307 811 YINAQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 811 ~~~~GsL~~~l~~~-~~l~w 829 (832)
|+++|+|.++++.. +.+++
T Consensus 97 ~~~~g~L~~~l~~~~~~~~~ 116 (327)
T 3lzb_A 97 LMPFGCLLDYVREHKDNIGS 116 (327)
T ss_dssp CCSSCBHHHHHHHTTTCCCH
T ss_pred ecCCCcHHHHHHhcCCCCCH
Confidence 99999999999864 34554
|
| >2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=7.5e-09 Score=111.75 Aligned_cols=91 Identities=20% Similarity=0.272 Sum_probs=73.8
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCC---CceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK---EHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~---~~~~~lv~e~ 811 (832)
...||+|+||.||+|+.. +|+.||||++... .......+.+|++++.+++||||+++++++.... ....++||||
T Consensus 16 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~lv~e~ 95 (353)
T 2b9h_A 16 KSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEVYIIQEL 95 (353)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCEEEEECC
T ss_pred eeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceEEEEEec
Confidence 678999999999999974 7999999999643 3334567899999999999999999999986541 1238999999
Q ss_pred CCCCCHHHHHhcCCCccc
Q 003307 812 INAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w 829 (832)
++ |+|.+++..+ .+++
T Consensus 96 ~~-~~L~~~~~~~-~~~~ 111 (353)
T 2b9h_A 96 MQ-TDLHRVISTQ-MLSD 111 (353)
T ss_dssp CS-EEHHHHHHHC-CCCH
T ss_pred cC-ccHHHHHhhc-CCCH
Confidence 98 6999998763 3443
|
| >3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=9.7e-09 Score=109.60 Aligned_cols=83 Identities=23% Similarity=0.383 Sum_probs=68.3
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC-ChhhHHHHHHHHH-HHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG-IAKGKKEFAREVK-KLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~f~~e~~-~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+.. +|+.||||+++.. ......++..|+. +++.++||||+++++++...+. .++||||++
T Consensus 27 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~--~~lv~e~~~ 104 (327)
T 3aln_A 27 LGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGD--CWICMELMS 104 (327)
T ss_dssp -CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSE--EEEEECCCS
T ss_pred hheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCc--eEEEEeecC
Confidence 678999999999999984 8999999999654 2333456666766 6788899999999999998776 999999999
Q ss_pred CCCHHHHHh
Q 003307 814 AQSLAVYLQ 822 (832)
Q Consensus 814 ~GsL~~~l~ 822 (832)
+ +|.+++.
T Consensus 105 ~-~l~~~~~ 112 (327)
T 3aln_A 105 T-SFDKFYK 112 (327)
T ss_dssp E-EHHHHHH
T ss_pred C-ChHHHHH
Confidence 5 8888776
|
| >3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ... | Back alignment and structure |
|---|
Probab=98.81 E-value=8.6e-09 Score=111.82 Aligned_cols=91 Identities=16% Similarity=0.228 Sum_probs=73.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC---ceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE---HEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~---~~~~lv~e~ 811 (832)
...||+|+||.||+|+.. +|+.||||++... .....+.+.+|++++.+++||||+++++++..... ...++|+||
T Consensus 32 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~iv~e~ 111 (364)
T 3qyz_A 32 LSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDL 111 (364)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEEEC
T ss_pred EEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceEEEEEcc
Confidence 678999999999999974 7899999999643 23345779999999999999999999999975431 138999999
Q ss_pred CCCCCHHHHHhcCCCccc
Q 003307 812 INAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w 829 (832)
++ |+|.+++... .+++
T Consensus 112 ~~-~~L~~~l~~~-~~~~ 127 (364)
T 3qyz_A 112 ME-TDLYKLLKTQ-HLSN 127 (364)
T ss_dssp CS-EEHHHHHHHC-CCCH
T ss_pred cC-cCHHHHHHhC-CCCH
Confidence 98 5999998764 3443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.3e-09 Score=126.46 Aligned_cols=91 Identities=20% Similarity=0.226 Sum_probs=71.8
Q ss_pred cCeeeeccCceEEEEEEC--CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCc---eEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD--SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEH---EKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~--~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~---~~~lv~e 810 (832)
...||+|+||.||+|+.. +|+.||||++... .....+.|.+|++++.+++|||||+++++|...+.. ..++|||
T Consensus 85 ~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~~lv~E 164 (681)
T 2pzi_A 85 KGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVGYIVME 164 (681)
T ss_dssp EEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEEEEEEE
T ss_pred EEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCceeEEEEE
Confidence 668999999999999974 6899999998543 334456799999999999999999999999764431 1599999
Q ss_pred cCCCCCHHHHHhcCCCccc
Q 003307 811 YINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~~l~w 829 (832)
||++|+|.+++.. .++|
T Consensus 165 ~~~g~~L~~~~~~--~l~~ 181 (681)
T 2pzi_A 165 YVGGQSLKRSKGQ--KLPV 181 (681)
T ss_dssp CCCCEECC----C--CCCH
T ss_pred eCCCCcHHHHHhC--CCCH
Confidence 9999999988765 4555
|
| >3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=6.6e-09 Score=116.38 Aligned_cols=86 Identities=21% Similarity=0.261 Sum_probs=70.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC----ceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE----HEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~----~~~~lv~ 809 (832)
...||+|+||.||+|+. .+|+.||||++... .....+.+.+|++++++++|||||++++++...+. ...++||
T Consensus 67 ~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~ 146 (464)
T 3ttj_A 67 LKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVM 146 (464)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEEEE
T ss_pred EEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCCeEEEEE
Confidence 57899999999999997 47999999999643 33345678999999999999999999999975432 2479999
Q ss_pred ecCCCCCHHHHHhc
Q 003307 810 NYINAQSLAVYLQG 823 (832)
Q Consensus 810 e~~~~GsL~~~l~~ 823 (832)
|||++ +|.+.++.
T Consensus 147 E~~~~-~l~~~~~~ 159 (464)
T 3ttj_A 147 ELMDA-NLCQVIQM 159 (464)
T ss_dssp ECCSE-EHHHHHTS
T ss_pred eCCCC-CHHHHHhh
Confidence 99986 46666643
|
| >2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A | Back alignment and structure |
|---|
Probab=98.80 E-value=4e-10 Score=120.91 Aligned_cols=84 Identities=12% Similarity=0.135 Sum_probs=65.2
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCC--------hhhHHHHHHHHHHHhcCC---------CCcceeeeeEEEC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGI--------AKGKKEFAREVKKLGNIK---------HPNLVSLQGYYWG 799 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~--------~~~~~~f~~e~~~l~~~~---------H~niv~l~g~~~~ 799 (832)
.+.||+|+||.||+|+. +|+.||||+++... ....+.+.+|++++++++ |||||++.+.+..
T Consensus 25 ~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~~~~~~ 103 (336)
T 2vuw_A 25 CEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCV 103 (336)
T ss_dssp CEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEEEEEEE
T ss_pred eeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhcceeEe
Confidence 67899999999999998 78999999985432 122467889999988885 7777777776431
Q ss_pred ------------------------------CCCceEEEEEecCCCCCHHHHHhc
Q 003307 800 ------------------------------PKEHEKLVISNYINAQSLAVYLQG 823 (832)
Q Consensus 800 ------------------------------~~~~~~~lv~e~~~~GsL~~~l~~ 823 (832)
.+. .++|||||++|++.+.+.+
T Consensus 104 ~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~--~~lv~E~~~~g~ll~~~~~ 155 (336)
T 2vuw_A 104 QGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQ--LFIVLEFEFGGIDLEQMRT 155 (336)
T ss_dssp ESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTC--EEEEEEEECCCEETGGGTT
T ss_pred cCCCcHHHHHHHHHHhhhccccccCccccccCe--EEEEEEecCCCccHHHHHh
Confidence 344 9999999999977666643
|
| >1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* | Back alignment and structure |
|---|
Probab=98.80 E-value=5.4e-09 Score=109.43 Aligned_cols=90 Identities=27% Similarity=0.398 Sum_probs=66.5
Q ss_pred cCeeeeccCceEEEEEE--CCCC--EEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL--DSGS--ILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~--~~g~--~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
.+.||+|+||.||+|+. .++. .||||+++.. .....+.|.+|++++.+++||||+++++++.... .++|+
T Consensus 23 ~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~---~~~v~ 99 (291)
T 1u46_A 23 LEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP---MKMVT 99 (291)
T ss_dssp EEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS---CEEEE
T ss_pred eeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC---ceeeE
Confidence 67899999999999986 2344 6899988543 2234577999999999999999999999997644 68999
Q ss_pred ecCCCCCHHHHHhcC-CCccc
Q 003307 810 NYINAQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 810 e~~~~GsL~~~l~~~-~~l~w 829 (832)
||+++|+|.+++... +.+++
T Consensus 100 e~~~~~~L~~~l~~~~~~~~~ 120 (291)
T 1u46_A 100 ELAPLGSLLDRLRKHQGHFLL 120 (291)
T ss_dssp ECCTTCBHHHHHHHHGGGSCH
T ss_pred ecccCCCHHHHHHhccCCcCH
Confidence 999999999999754 33444
|
| >3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-09 Score=124.47 Aligned_cols=87 Identities=24% Similarity=0.378 Sum_probs=74.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEEC------CCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWG------PKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~------~~~~~~~lv 808 (832)
...||+|+||.||+|.. .+|+.||||++... .....+.|.+|++++.+++|||||++++++.. .+. .++|
T Consensus 19 ~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~--~~LV 96 (676)
T 3qa8_A 19 KERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL--PLLA 96 (676)
T ss_dssp CCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS--CCCE
T ss_pred EEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe--EEEE
Confidence 67899999999999997 47999999998653 34446779999999999999999999998755 333 7999
Q ss_pred EecCCCCCHHHHHhcCC
Q 003307 809 SNYINAQSLAVYLQGKG 825 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~ 825 (832)
||||++|+|.++++...
T Consensus 97 mEy~~ggsL~~~L~~~~ 113 (676)
T 3qa8_A 97 MEYCEGGDLRKYLNQFE 113 (676)
T ss_dssp EECCSSCBHHHHHHSSS
T ss_pred EEeCCCCCHHHHHHhcc
Confidence 99999999999998644
|
| >2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-08 Score=111.06 Aligned_cols=86 Identities=19% Similarity=0.257 Sum_probs=71.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC----ceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE----HEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~----~~~~lv~ 809 (832)
...||+|+||.||+|+.. +|+.||||++... .....+.+.+|++++++++|||||++++++...+. ...++||
T Consensus 30 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~lv~ 109 (371)
T 2xrw_A 30 LKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVM 109 (371)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCCEEEEEE
T ss_pred eeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccccceEEEE
Confidence 678999999999999974 7899999998643 23345678999999999999999999999976541 1389999
Q ss_pred ecCCCCCHHHHHhc
Q 003307 810 NYINAQSLAVYLQG 823 (832)
Q Consensus 810 e~~~~GsL~~~l~~ 823 (832)
|||+ |+|.+++..
T Consensus 110 e~~~-~~l~~~~~~ 122 (371)
T 2xrw_A 110 ELMD-ANLCQVIQM 122 (371)
T ss_dssp ECCS-EEHHHHHHS
T ss_pred EcCC-CCHHHHHhh
Confidence 9998 578888764
|
| >2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.4e-09 Score=114.41 Aligned_cols=87 Identities=15% Similarity=0.134 Sum_probs=69.7
Q ss_pred cCeeeeccCceEEEEEEC---------CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCccee---------------
Q 003307 737 AEVIGRSCHGTLYKATLD---------SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVS--------------- 792 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~---------~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~--------------- 792 (832)
.+.||+|+||.||+|+.. +|+.||||.+... +.+.+|++++.+++|||||+
T Consensus 47 ~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~~ 121 (352)
T 2jii_A 47 KSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPT 121 (352)
T ss_dssp EEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCCC
T ss_pred EEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCCccCccc
Confidence 678999999999999974 3889999998643 35789999999999999998
Q ss_pred eeeEEECCCCceEEEEEecCCCCCHHHHHhcC--CCcccc
Q 003307 793 LQGYYWGPKEHEKLVISNYINAQSLAVYLQGK--GLVLWF 830 (832)
Q Consensus 793 l~g~~~~~~~~~~~lv~e~~~~GsL~~~l~~~--~~l~w~ 830 (832)
+++++...+. ..++||||| +|+|.+++... ..++|.
T Consensus 122 ~~~~~~~~~~-~~~lv~e~~-~~~L~~~l~~~~~~~l~~~ 159 (352)
T 2jii_A 122 CMGFGVHQDK-YRFLVLPSL-GRSLQSALDVSPKHVLSER 159 (352)
T ss_dssp CCEEEEETTT-EEEEEEECC-CEEHHHHHHHSGGGCCCHH
T ss_pred hhhccccCCc-EEEEEecCC-CcCHHHHHHhCCcCCCCHH
Confidence 6777765322 389999999 99999999875 556653
|
| >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=9.9e-09 Score=114.08 Aligned_cols=83 Identities=20% Similarity=0.162 Sum_probs=70.0
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
..+||+|+||+||.+...+|+.||||++... ..+.+.+|++++.++ +|||||++++++...+. .++|||||+ |
T Consensus 20 ~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~--~~lv~E~~~-g 93 (434)
T 2rio_A 20 EKILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETTDRF--LYIALELCN-L 93 (434)
T ss_dssp EEEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSE--EEEEECCCS-E
T ss_pred cCeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCe--EEEEEecCC-C
Confidence 5689999999998776668999999998543 235678999999876 89999999999987776 999999996 7
Q ss_pred CHHHHHhcCC
Q 003307 816 SLAVYLQGKG 825 (832)
Q Consensus 816 sL~~~l~~~~ 825 (832)
+|.+++...+
T Consensus 94 sL~~~l~~~~ 103 (434)
T 2rio_A 94 NLQDLVESKN 103 (434)
T ss_dssp EHHHHHHTC-
T ss_pred CHHHHHhccC
Confidence 9999998654
|
| >1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1e-08 Score=107.63 Aligned_cols=88 Identities=13% Similarity=0.120 Sum_probs=74.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|+. .+|+.||||++.... ..+.+.+|++++.++ +|+|++++++++..... .++||||+ +
T Consensus 15 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~--~~lv~e~~-~ 89 (298)
T 1csn_A 15 GRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLH--NVLVIDLL-G 89 (298)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTE--EEEEEECC-C
T ss_pred EEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCce--eEEEEEec-C
Confidence 67899999999999996 589999999985432 234588999999999 89999999999987776 99999999 9
Q ss_pred CCHHHHHhcCC-Cccc
Q 003307 815 QSLAVYLQGKG-LVLW 829 (832)
Q Consensus 815 GsL~~~l~~~~-~l~w 829 (832)
|+|.++++..+ .+++
T Consensus 90 ~~L~~~l~~~~~~~~~ 105 (298)
T 1csn_A 90 PSLEDLLDLCGRKFSV 105 (298)
T ss_dssp CBHHHHHHHTTTCCCH
T ss_pred CCHHHHHHHhccCCCH
Confidence 99999998644 3554
|
| >2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... | Back alignment and structure |
|---|
Probab=98.77 E-value=5.3e-09 Score=113.45 Aligned_cols=91 Identities=19% Similarity=0.260 Sum_probs=65.6
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC----ceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE----HEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~----~~~~lv~ 809 (832)
...||+|+||.||+|.. .+|+.||||++... .....+.+.+|++++++++||||+++++++..... ...++|+
T Consensus 34 ~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~~~~lv~ 113 (367)
T 2fst_X 34 LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVT 113 (367)
T ss_dssp EEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEE
T ss_pred eeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCCeEEEEe
Confidence 57899999999999997 58999999998543 33345678999999999999999999999975421 2379999
Q ss_pred ecCCCCCHHHHHhcCCCccc
Q 003307 810 NYINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~~l~w 829 (832)
||+ +|+|.++++. +.+++
T Consensus 114 e~~-~~~L~~~~~~-~~l~~ 131 (367)
T 2fst_X 114 HLM-GADLNNIVKC-QKLTD 131 (367)
T ss_dssp ECC-CEECC------CCCCH
T ss_pred ccc-CCCHHHHHhc-CCCCH
Confidence 999 6899988865 34544
|
| >3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=8.1e-09 Score=109.16 Aligned_cols=92 Identities=27% Similarity=0.322 Sum_probs=70.9
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC-----hhhHHHHHHHHHHHhcC---CCCcceeeeeEEECCCCc---e
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI-----AKGKKEFAREVKKLGNI---KHPNLVSLQGYYWGPKEH---E 804 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-----~~~~~~f~~e~~~l~~~---~H~niv~l~g~~~~~~~~---~ 804 (832)
...||+|+||.||+|+. .+|+.||||++.... ......+.+|++++.++ +||||++++++|...... .
T Consensus 14 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~~~~~~~ 93 (308)
T 3g33_A 14 VAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIK 93 (308)
T ss_dssp EEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECCSSSEEE
T ss_pred EEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccCCCCcee
Confidence 67899999999999997 589999999885221 11234567777777766 499999999999765421 3
Q ss_pred EEEEEecCCCCCHHHHHhcCCC--ccc
Q 003307 805 KLVISNYINAQSLAVYLQGKGL--VLW 829 (832)
Q Consensus 805 ~~lv~e~~~~GsL~~~l~~~~~--l~w 829 (832)
.++||||++ |+|.+++..... ++|
T Consensus 94 ~~lv~e~~~-~~L~~~~~~~~~~~~~~ 119 (308)
T 3g33_A 94 VTLVFEHVD-QDLRTYLDKAPPPGLPA 119 (308)
T ss_dssp EEEEEECCC-CBHHHHHHTCCTTCSCH
T ss_pred EEEEehhhh-cCHHHHHhhccCCCCCH
Confidence 789999998 699999987653 554
|
| >3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=98.77 E-value=8.3e-09 Score=112.76 Aligned_cols=88 Identities=19% Similarity=0.322 Sum_probs=67.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCC--------------
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK-------------- 801 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~-------------- 801 (832)
...||+|+||.||+|+. .+|+.||||++..... .+.+|++++++++|||||++++++....
T Consensus 12 ~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~~~~~~~~ 87 (383)
T 3eb0_A 12 GKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQPPDDHN 87 (383)
T ss_dssp EEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHTTCCCTTBCCEEEEEEEC---------------
T ss_pred EEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc----hHHHHHHHHHHcCCCCccchhheeeecCcccccccccccccc
Confidence 67899999999999997 5899999999854322 2347999999999999999999985432
Q ss_pred ----------------------CceEEEEEecCCCCCHHHHHhc----CCCccc
Q 003307 802 ----------------------EHEKLVISNYINAQSLAVYLQG----KGLVLW 829 (832)
Q Consensus 802 ----------------------~~~~~lv~e~~~~GsL~~~l~~----~~~l~w 829 (832)
....++|||||+ |+|.+.++. .+.++|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~ 140 (383)
T 3eb0_A 88 KLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPM 140 (383)
T ss_dssp ----------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCH
T ss_pred cccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCH
Confidence 113789999999 588777653 445554
|
| >2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.9e-09 Score=114.60 Aligned_cols=93 Identities=13% Similarity=0.069 Sum_probs=67.8
Q ss_pred cCeeeeccCceEEEEEEC----CCCEEEEEEeccCChh-----------hHHHHHHHHHHHhcCCCCcceeeeeEEECC-
Q 003307 737 AEVIGRSCHGTLYKATLD----SGSILAVKRLREGIAK-----------GKKEFAREVKKLGNIKHPNLVSLQGYYWGP- 800 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~~~~-----------~~~~f~~e~~~l~~~~H~niv~l~g~~~~~- 800 (832)
.+.||+|+||.||+|+.. ++..+|||+....... ..+.+.+|+..+..++||||+++++++...
T Consensus 42 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~~~~~~ 121 (345)
T 2v62_A 42 GKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGSGLTEF 121 (345)
T ss_dssp EEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEEEEEES
T ss_pred EeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeeccccccc
Confidence 678999999999999974 6789999998543211 123477889999999999999999999872
Q ss_pred -CCceEEEEEecCCCCCHHHHHhcCCCcccc
Q 003307 801 -KEHEKLVISNYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 801 -~~~~~~lv~e~~~~GsL~~~l~~~~~l~w~ 830 (832)
+....++||||| +|+|.+++...+.++|.
T Consensus 122 ~~~~~~~lv~e~~-~~~L~~~l~~~~~~~~~ 151 (345)
T 2v62_A 122 KGRSYRFMVMERL-GIDLQKISGQNGTFKKS 151 (345)
T ss_dssp SSCEEEEEEEECE-EEEHHHHCBGGGBCCHH
T ss_pred CCCcEEEEEEecc-CCCHHHHHHhcCCCCHH
Confidence 122389999999 99999999876666653
|
| >3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-08 Score=108.70 Aligned_cols=89 Identities=17% Similarity=0.221 Sum_probs=66.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCC--CceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK--EHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~--~~~~~lv~e~~~ 813 (832)
..+||+|+||.||+|+.. +|+.||||++..... .. .+....+..++||||+++++++.... ....++|||||+
T Consensus 34 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~---~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~ 109 (336)
T 3fhr_A 34 KQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPK-AR---QEVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIMECME 109 (336)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEESSHH-HH---HHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCT
T ss_pred ceeeeeCCCeEEEEEEECCCCCEEEEEEecCcHH-HH---HHHHHHHHhcCCCChHHHHHHHhhccCCCceEEEEEeccC
Confidence 357999999999999985 799999999864321 11 22223456779999999999987521 223799999999
Q ss_pred CCCHHHHHhcCC--Cccc
Q 003307 814 AQSLAVYLQGKG--LVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~~~--~l~w 829 (832)
+|+|.+++.... .++|
T Consensus 110 gg~L~~~l~~~~~~~l~~ 127 (336)
T 3fhr_A 110 GGELFSRIQERGDQAFTE 127 (336)
T ss_dssp TEEHHHHHHTC-CCCCBH
T ss_pred CCCHHHHHHhcCCCCCCH
Confidence 999999998764 4554
|
| >3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A | Back alignment and structure |
|---|
Probab=98.76 E-value=7.3e-09 Score=112.39 Aligned_cols=93 Identities=16% Similarity=0.102 Sum_probs=70.5
Q ss_pred cCeeeeccCceEEEEEECC------CCEEEEEEeccCChhh-----------HHHHHHHHHHHhcCCCCcceeeeeEEEC
Q 003307 737 AEVIGRSCHGTLYKATLDS------GSILAVKRLREGIAKG-----------KKEFAREVKKLGNIKHPNLVSLQGYYWG 799 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~------g~~vAvK~l~~~~~~~-----------~~~f~~e~~~l~~~~H~niv~l~g~~~~ 799 (832)
...||+|+||.||+|+... ++.||||++....... ...+..|+..+.+++|||||++++++..
T Consensus 40 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~ 119 (364)
T 3op5_A 40 GLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLH 119 (364)
T ss_dssp EEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCEEEEEEE
T ss_pred EEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeEEeeeee
Confidence 6789999999999998743 4789999986543211 1234567777888999999999999876
Q ss_pred CCC--ceEEEEEecCCCCCHHHHHhcC-CCcccc
Q 003307 800 PKE--HEKLVISNYINAQSLAVYLQGK-GLVLWF 830 (832)
Q Consensus 800 ~~~--~~~~lv~e~~~~GsL~~~l~~~-~~l~w~ 830 (832)
... ...++||||| +|+|.++++.. +.++|.
T Consensus 120 ~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~ 152 (364)
T 3op5_A 120 DKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRK 152 (364)
T ss_dssp EETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHH
T ss_pred ccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHH
Confidence 422 2379999999 99999999875 456664
|
| >3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=8.3e-09 Score=111.33 Aligned_cols=92 Identities=22% Similarity=0.225 Sum_probs=72.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCC------CceEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK------EHEKLV 807 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~------~~~~~l 807 (832)
...||+|+||.||+|+. .+|+.||||++.... ......+.+|++++.+++|||||+++++|.... ....++
T Consensus 22 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~l 101 (351)
T 3mi9_A 22 LAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYL 101 (351)
T ss_dssp EEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------CEEEE
T ss_pred EEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCCceEEE
Confidence 67899999999999998 589999999984332 223457889999999999999999999987643 123899
Q ss_pred EEecCCCCCHHHHHhcC-CCccc
Q 003307 808 ISNYINAQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 808 v~e~~~~GsL~~~l~~~-~~l~w 829 (832)
|||||++ +|.+.+... ..+++
T Consensus 102 v~e~~~~-~l~~~l~~~~~~~~~ 123 (351)
T 3mi9_A 102 VFDFCEH-DLAGLLSNVLVKFTL 123 (351)
T ss_dssp EEECCSE-EHHHHHHCTTSCCCH
T ss_pred EEeccCC-CHHHHHhhccCCCCH
Confidence 9999995 787777654 34554
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.76 E-value=4.5e-11 Score=121.65 Aligned_cols=143 Identities=15% Similarity=0.141 Sum_probs=72.3
Q ss_pred CCCCccccCCC--cEEEEEeCC---CCCccccCcccccCCCCCCEEEcCCCCCcccCC--CCCCCCCCCE--EECCCCCC
Q 003307 55 RNWFGITCTNG--YVTSIMLND---MGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT--DIGSIQSLEF--LDLSHNLF 125 (832)
Q Consensus 55 ~~w~gv~C~~~--~v~~l~l~~---~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~l~~L~~--L~Ls~N~l 125 (832)
|.|.|+.|+.. +|+.+...+ .++.|.+.+..+..++. .|...+|..++.+. .+...+.|+. ++++.|..
T Consensus 78 ~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~--~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~ 155 (267)
T 3rw6_A 78 KAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKL--IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRR 155 (267)
T ss_dssp HHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHH--HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSH
T ss_pred HhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHH--HHHhccchhccccCHHHcCCCcchhhcCccccCCHH
Confidence 48999999732 554444433 23334443333322222 12222222222222 2444444544 55666633
Q ss_pred C---ccCcccccCCCCCCEEEcccccccc--cCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCC--CCCEEECccCcCc
Q 003307 126 H---GLIPSGIVSLKNLMLLNISSNSFEG--TFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLG--SVVHVDLSNNQFS 198 (832)
Q Consensus 126 ~---~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~--~L~~L~Ls~N~l~ 198 (832)
. +.++....++++|++|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.
T Consensus 156 ~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 156 SCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred HHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence 2 2222222456677777777777765 3345555667777777777776654 2233333 6666666666666
Q ss_pred ccc
Q 003307 199 GSL 201 (832)
Q Consensus 199 ~~~ 201 (832)
+.+
T Consensus 234 ~~~ 236 (267)
T 3rw6_A 234 DTF 236 (267)
T ss_dssp GGC
T ss_pred ccc
Confidence 543
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.5e-09 Score=112.17 Aligned_cols=143 Identities=14% Similarity=0.146 Sum_probs=73.5
Q ss_pred CcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhh--cCCCCCEEECcc--CcCccccCC-
Q 003307 129 IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLS--QLGSVVHVDLSN--NQFSGSLDL- 203 (832)
Q Consensus 129 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~--~l~~L~~L~Ls~--N~l~~~~~~- 203 (832)
+...+..+++|+.|+|++|.-. .++. +. +++|++|+|..|.++......+. .+++|++|+|+. |...+....
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 3445667788888888877311 1233 43 78899999988887655445554 688898888853 222111000
Q ss_pred CCC---CCCCCCCccEEECCCCCCeeccCCCC-CCCCCCCcCEEEccCCccccc----CC-CccccccccEEEccccCCC
Q 003307 204 GLG---DSSFISSIQYLNISENSLVGELFPHD-GMPYFDNLEVFDASNNHLVGA----IP-SFNFVFSLRILRLGSNQLS 274 (832)
Q Consensus 204 ~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~----~~-~~~~l~~L~~L~L~~N~l~ 274 (832)
.+. ....+++|+.|+|.+|.+.+...... ....+++|+.|+|+.|.+.+. ++ .+..+++|+.|+|++|.++
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 000 00123556666665555543211000 011344555555555555432 11 2234455555555555544
|
| >2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.2e-09 Score=114.19 Aligned_cols=89 Identities=20% Similarity=0.328 Sum_probs=74.2
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|+... .||||+++... ....+.|.+|++++.+++||||+++++++...+. .++|+||+++
T Consensus 38 ~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~--~~iv~e~~~~ 113 (319)
T 2y4i_B 38 GELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPH--LAIITSLCKG 113 (319)
T ss_dssp CCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSC--EEEECBCCCS
T ss_pred eeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCc--eEEEeecccC
Confidence 6789999999999999753 49999985432 2223568899999999999999999999998877 9999999999
Q ss_pred CCHHHHHhcCC-Cccc
Q 003307 815 QSLAVYLQGKG-LVLW 829 (832)
Q Consensus 815 GsL~~~l~~~~-~l~w 829 (832)
|+|.++++..+ .+++
T Consensus 114 ~~L~~~l~~~~~~~~~ 129 (319)
T 2y4i_B 114 RTLYSVVRDAKIVLDV 129 (319)
T ss_dssp EEHHHHTTSSCCCCCS
T ss_pred CcHHHHHHhcCCCCCH
Confidence 99999998654 4554
|
| >4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-08 Score=110.63 Aligned_cols=86 Identities=19% Similarity=0.256 Sum_probs=71.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCc----eEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEH----EKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~----~~~lv~ 809 (832)
...||+|+||.||+|+.. +|+.||||++... .....+.+.+|++++.+++||||++++++|...+.. ..++||
T Consensus 47 ~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~ 126 (371)
T 4exu_A 47 PTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVM 126 (371)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCCCCEEEE
T ss_pred EeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccceeEEEEE
Confidence 678999999999999974 7999999999643 233457789999999999999999999999876541 139999
Q ss_pred ecCCCCCHHHHHhc
Q 003307 810 NYINAQSLAVYLQG 823 (832)
Q Consensus 810 e~~~~GsL~~~l~~ 823 (832)
||++ |+|.+++..
T Consensus 127 e~~~-~~l~~~~~~ 139 (371)
T 4exu_A 127 PFMQ-TDLQKIMGM 139 (371)
T ss_dssp ECCC-EEHHHHTTS
T ss_pred cccc-ccHHHHhhc
Confidence 9999 689887643
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.73 E-value=2e-08 Score=107.57 Aligned_cols=85 Identities=26% Similarity=0.298 Sum_probs=65.6
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHH--HhcCCCCcceeeeeEEEC---CCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKK--LGNIKHPNLVSLQGYYWG---PKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~--l~~~~H~niv~l~g~~~~---~~~~~~~lv~e~ 811 (832)
.+.||+|+||.||+|+. +|+.||||++.... ...+..|.++ +..++||||+++++++.. .+....++||||
T Consensus 18 ~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~ 93 (336)
T 3g2f_A 18 LELIGRGRYGAVYKGSL-DERPVAVKVFSFAN---RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEY 93 (336)
T ss_dssp EEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEEEECC
T ss_pred eeecccCCCeEEEEEEE-CCeEEEEEEeeccc---hhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEEEEEec
Confidence 67899999999999987 68999999986432 3445555555 456899999999986642 222236899999
Q ss_pred CCCCCHHHHHhcCC
Q 003307 812 INAQSLAVYLQGKG 825 (832)
Q Consensus 812 ~~~GsL~~~l~~~~ 825 (832)
|++|+|.++++...
T Consensus 94 ~~~g~L~~~l~~~~ 107 (336)
T 3g2f_A 94 YPNGSLXKYLSLHT 107 (336)
T ss_dssp CTTCBHHHHHHHCC
T ss_pred CCCCcHHHHHhhcc
Confidence 99999999997654
|
| >1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-08 Score=108.91 Aligned_cols=92 Identities=27% Similarity=0.333 Sum_probs=68.6
Q ss_pred cCeeeeccCceEEEEEE--CCCCEEEEEEeccCC--hhhHHHHHHHHHHHhcC---CCCcceeeeeEEEC---CCCceEE
Q 003307 737 AEVIGRSCHGTLYKATL--DSGSILAVKRLREGI--AKGKKEFAREVKKLGNI---KHPNLVSLQGYYWG---PKEHEKL 806 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~--~~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~---~H~niv~l~g~~~~---~~~~~~~ 806 (832)
...||+|+||.||+|+. .+|+.||||+++... ......+.+|++++.++ +||||++++++|.. ......+
T Consensus 16 ~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~ 95 (326)
T 1blx_A 16 VAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLT 95 (326)
T ss_dssp EEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEE
T ss_pred eeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecccCCCceEE
Confidence 67899999999999997 468899999885321 11223466777776655 89999999999872 1222389
Q ss_pred EEEecCCCCCHHHHHhcCC--Cccc
Q 003307 807 VISNYINAQSLAVYLQGKG--LVLW 829 (832)
Q Consensus 807 lv~e~~~~GsL~~~l~~~~--~l~w 829 (832)
+||||++ |+|.+++.... .+++
T Consensus 96 lv~e~~~-~~L~~~l~~~~~~~~~~ 119 (326)
T 1blx_A 96 LVFEHVD-QDLTTYLDKVPEPGVPT 119 (326)
T ss_dssp EEEECCS-CBHHHHHHHSCTTCSCH
T ss_pred EEEecCC-CCHHHHHHhcccCCCCH
Confidence 9999999 69999998643 2554
|
| >3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.9e-08 Score=111.50 Aligned_cols=83 Identities=22% Similarity=0.255 Sum_probs=68.7
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.++||+|+||+||.....+|+.||||++..... ..+.+|++++.++ +|||||++++++...+. .++|||||+ |
T Consensus 29 ~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~--~~lv~E~~~-g 102 (432)
T 3p23_A 29 KDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEKDRQF--QYIAIELCA-A 102 (432)
T ss_dssp EEEEEECGGGCEEEEEESSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEEETTE--EEEEEECCS-E
T ss_pred CCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEecCCE--EEEEEECCC-C
Confidence 678999999996655556899999999854322 2356899999999 89999999999987776 999999997 6
Q ss_pred CHHHHHhcCC
Q 003307 816 SLAVYLQGKG 825 (832)
Q Consensus 816 sL~~~l~~~~ 825 (832)
+|.+++....
T Consensus 103 ~L~~~l~~~~ 112 (432)
T 3p23_A 103 TLQEYVEQKD 112 (432)
T ss_dssp EHHHHHHSSS
T ss_pred CHHHHHHhcC
Confidence 9999998654
|
| >3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.4e-08 Score=109.67 Aligned_cols=85 Identities=19% Similarity=0.273 Sum_probs=70.0
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCc----eEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEH----EKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~----~~~lv~ 809 (832)
...||+|+||.||+|+.. +|+.||||++... .....+.+.+|++++.+++||||+++++++...+.. ..++||
T Consensus 29 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~ 108 (353)
T 3coi_A 29 PTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVM 108 (353)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEE
T ss_pred eeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccceeEEEEe
Confidence 678999999999999974 7999999998543 233356789999999999999999999999765431 249999
Q ss_pred ecCCCCCHHHHHh
Q 003307 810 NYINAQSLAVYLQ 822 (832)
Q Consensus 810 e~~~~GsL~~~l~ 822 (832)
||++ |+|.+++.
T Consensus 109 e~~~-~~l~~~~~ 120 (353)
T 3coi_A 109 PFMQ-TDLQKIMG 120 (353)
T ss_dssp ECCS-EEGGGTTT
T ss_pred cccc-CCHHHHhc
Confidence 9998 68877654
|
| >3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=3.8e-08 Score=109.12 Aligned_cols=90 Identities=16% Similarity=0.167 Sum_probs=73.2
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcC------CCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNI------KHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~------~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
.+.||+|+||.||+|+.. +|+.||||+++.. ....+++.+|++++..+ .|+||+++++++...+. .++||
T Consensus 102 ~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~--~~lv~ 178 (429)
T 3kvw_A 102 LKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNH--ICMTF 178 (429)
T ss_dssp EEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTE--EEEEE
T ss_pred EEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCe--EEEEE
Confidence 578999999999999874 7899999999653 23346678888888766 67799999999988776 99999
Q ss_pred ecCCCCCHHHHHhcCC--Ccccc
Q 003307 810 NYINAQSLAVYLQGKG--LVLWF 830 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~--~l~w~ 830 (832)
|||+ |+|.+++.... .++|.
T Consensus 179 e~~~-~~L~~~l~~~~~~~~~~~ 200 (429)
T 3kvw_A 179 ELLS-MNLYELIKKNKFQGFSLP 200 (429)
T ss_dssp CCCC-CBHHHHHHHTTTCCCCHH
T ss_pred eccC-CCHHHHHHhccCCCCCHH
Confidence 9997 69999998654 35553
|
| >1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... | Back alignment and structure |
|---|
Probab=98.67 E-value=2.8e-08 Score=109.95 Aligned_cols=81 Identities=23% Similarity=0.444 Sum_probs=64.0
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCC----CceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK----EHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~----~~~~~lv~e~ 811 (832)
.++||+|+||.||+|+.. +|+.||||++.... +.+.+|++++++++|||||+++++|.... ....++||||
T Consensus 59 ~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~ 134 (420)
T 1j1b_A 59 TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDY 134 (420)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEEEEC
T ss_pred eeEEeeCCCEEEEEEEECCCCcEEEEEEecccc----hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEeehhc
Confidence 578999999999999984 79999999985432 22347999999999999999999985421 1126799999
Q ss_pred CCCCCHHHHHh
Q 003307 812 INAQSLAVYLQ 822 (832)
Q Consensus 812 ~~~GsL~~~l~ 822 (832)
|++ ++.+.+.
T Consensus 135 ~~~-~l~~~~~ 144 (420)
T 1j1b_A 135 VPE-TVYRVAR 144 (420)
T ss_dssp CCE-EHHHHHH
T ss_pred ccc-cHHHHHH
Confidence 996 6666654
|
| >3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A | Back alignment and structure |
|---|
Probab=98.66 E-value=3.5e-08 Score=103.52 Aligned_cols=89 Identities=13% Similarity=0.101 Sum_probs=71.6
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+. .+|+.||||++..... .+++.+|++++.+++|+++++.+++|...+. ..++||||+ +|
T Consensus 14 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~-~~~lv~e~~-~~ 89 (296)
T 3uzp_A 14 GRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGD-YNVMVMELL-GP 89 (296)
T ss_dssp EEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEETT-EEEEEEECC-CC
T ss_pred EEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCCCC-ceEEEEEec-CC
Confidence 67899999999999997 5899999999854332 2468899999999999998887777754332 389999999 89
Q ss_pred CHHHHHhc-CCCccc
Q 003307 816 SLAVYLQG-KGLVLW 829 (832)
Q Consensus 816 sL~~~l~~-~~~l~w 829 (832)
+|.++++. ++.+++
T Consensus 90 ~L~~~~~~~~~~~~~ 104 (296)
T 3uzp_A 90 SLEDLFNFCSRKFSL 104 (296)
T ss_dssp BHHHHHHHTTTCCCH
T ss_pred CHHHHHHhhccCCCH
Confidence 99999974 345554
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.5e-06 Score=92.77 Aligned_cols=81 Identities=15% Similarity=0.166 Sum_probs=47.1
Q ss_pred cCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEe
Q 003307 353 GNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLN 432 (832)
Q Consensus 353 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 432 (832)
+..|+.+.+..+ ++.+....|.++.+|+.+.+.++.++.....+|.++.+|+.++|..+ ++.+...+|.++.+|+.+.
T Consensus 262 ~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 262 CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred eehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence 334555555433 44344455666666666666666666555566666666666666543 4444555666666666665
Q ss_pred ccC
Q 003307 433 LSG 435 (832)
Q Consensus 433 Ls~ 435 (832)
+..
T Consensus 340 ip~ 342 (379)
T 4h09_A 340 YPK 342 (379)
T ss_dssp CCT
T ss_pred ECC
Confidence 543
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.3e-09 Score=113.89 Aligned_cols=202 Identities=15% Similarity=0.182 Sum_probs=131.0
Q ss_pred CCcEEEEEeCCCCCcc-ccC------cccccCCCCCCEEEcCCCCCc---------ccCC-CCCCCCCCCEEECCCCC-C
Q 003307 64 NGYVTSIMLNDMGLVG-NFS------FPTIIGLKMLCNVSVSNNQLM---------GNIT-DIGSIQSLEFLDLSHNL-F 125 (832)
Q Consensus 64 ~~~v~~l~l~~~~l~g-~~~------~~~~~~l~~L~~L~Ls~n~l~---------~~~~-~~~~l~~L~~L~Ls~N~-l 125 (832)
..+|++|.+...+..| ... ..++..+++|+.|.+..+... +.+. .+..+++|+.|+|++|. +
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 4568888888766543 110 123556889999999765431 1122 34678999999999883 3
Q ss_pred CccCcccccCCCCCCEEEcccccccccCCCCCC--CCCCCCEeeCcC--CCCCCc-----cchhh--hcCCCCCEEECcc
Q 003307 126 HGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFG--GLGKLKYLDLRA--NRFGGD-----IMHLL--SQLGSVVHVDLSN 194 (832)
Q Consensus 126 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~L~~--N~l~~~-----~~~~l--~~l~~L~~L~Ls~ 194 (832)
+ ++. +. +++|++|+|..|.++......+. .+++|++|+|+. |...+. +...+ ..+++|++|+|.+
T Consensus 186 ~--l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~ 261 (362)
T 2ra8_A 186 S--IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVD 261 (362)
T ss_dssp B--CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEES
T ss_pred e--ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCC
Confidence 2 232 43 88999999999988754333343 789999999863 222211 11223 2578999999999
Q ss_pred CcCccccCCCCCCCCCCCCccEEECCCCCCeec----cCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEcc
Q 003307 195 NQFSGSLDLGLGDSSFISSIQYLNISENSLVGE----LFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLG 269 (832)
Q Consensus 195 N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~ 269 (832)
|.+.+.....+.....+++|+.|+|+.|.+.+. ++.. +..+++|+.|+++.|.++...- .+...- ...++++
T Consensus 262 ~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~--L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~ 338 (362)
T 2ra8_A 262 AEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH--VDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVS 338 (362)
T ss_dssp CTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTT--HHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECC
T ss_pred CCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhh--cccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEec
Confidence 998754333333223468999999999999763 2222 4567899999999998874322 222100 2457777
Q ss_pred ccC
Q 003307 270 SNQ 272 (832)
Q Consensus 270 ~N~ 272 (832)
.++
T Consensus 339 ~~~ 341 (362)
T 2ra8_A 339 DSQ 341 (362)
T ss_dssp SBC
T ss_pred CCc
Confidence 765
|
| >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=2e-08 Score=114.29 Aligned_cols=84 Identities=15% Similarity=0.161 Sum_probs=62.6
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCC---h-----hhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGI---A-----KGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~---~-----~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv 808 (832)
.++||+|+||.||+|.. .+..+|+|+..... . ...+.|.+|++++.+++|||||++..|+...+. .++|
T Consensus 341 ~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~--~~lV 417 (540)
T 3en9_A 341 EHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDN--KRIM 417 (540)
T ss_dssp -------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTT--TEEE
T ss_pred CCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCc--cEEE
Confidence 57899999999999965 57899999863321 1 113458999999999999999977777776666 8999
Q ss_pred EecCCCCCHHHHHhc
Q 003307 809 SNYINAQSLAVYLQG 823 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~ 823 (832)
||||++|+|.++++.
T Consensus 418 mE~~~ggsL~~~l~~ 432 (540)
T 3en9_A 418 MSYINGKLAKDVIED 432 (540)
T ss_dssp EECCCSEEHHHHSTT
T ss_pred EECCCCCCHHHHHHH
Confidence 999999999998765
|
| >3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... | Back alignment and structure |
|---|
Probab=98.64 E-value=9.6e-09 Score=109.25 Aligned_cols=91 Identities=15% Similarity=0.273 Sum_probs=75.1
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCCh------hhHHHHHHHHHHHhcCC--CCcceeeeeEEECCCCceEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIA------KGKKEFAREVKKLGNIK--HPNLVSLQGYYWGPKEHEKLV 807 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~------~~~~~f~~e~~~l~~~~--H~niv~l~g~~~~~~~~~~~l 807 (832)
...||+|+||.||+|+. .+|+.||||+++.... ...+.+.+|++++.+++ |+||+++++++...+. .++
T Consensus 48 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~~--~~l 125 (320)
T 3a99_A 48 GPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS--FVL 125 (320)
T ss_dssp EEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE--EEE
T ss_pred EEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecCCc--EEE
Confidence 67899999999999997 5889999999854311 12245778999999996 5999999999998776 999
Q ss_pred EEecCCC-CCHHHHHhcCCCccc
Q 003307 808 ISNYINA-QSLAVYLQGKGLVLW 829 (832)
Q Consensus 808 v~e~~~~-GsL~~~l~~~~~l~w 829 (832)
|+||+.+ |+|.+++..++.+++
T Consensus 126 v~e~~~~~~~L~~~l~~~~~l~~ 148 (320)
T 3a99_A 126 ILERPEPVQDLFDFITERGALQE 148 (320)
T ss_dssp EEECCSSEEEHHHHHHHHCSCCH
T ss_pred EEEcCCCCccHHHHHhccCCCCH
Confidence 9999986 899999987766665
|
| >3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=4.9e-08 Score=106.13 Aligned_cols=86 Identities=9% Similarity=0.029 Sum_probs=57.0
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCCh---hhHHHHHHH---HHHHhcCCCCcceeee-------eEEECCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIA---KGKKEFARE---VKKLGNIKHPNLVSLQ-------GYYWGPKE 802 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~e---~~~l~~~~H~niv~l~-------g~~~~~~~ 802 (832)
...||+|+||.||+|+.. +|+.||||++..... ...+.+.+| ++.+++ +|||||+++ +++.....
T Consensus 67 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~~~~~~~ 145 (371)
T 3q60_A 67 VEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDAVAVQSQ 145 (371)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCEEEEETTS
T ss_pred eeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehheecCCC
Confidence 678999999999999974 899999999965432 234567777 455666 799988755 33332211
Q ss_pred ---------------ceEEEEEecCCCCCHHHHHhcC
Q 003307 803 ---------------HEKLVISNYINAQSLAVYLQGK 824 (832)
Q Consensus 803 ---------------~~~~lv~e~~~~GsL~~~l~~~ 824 (832)
...++|||||+ |+|.++++..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~ 181 (371)
T 3q60_A 146 PPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTL 181 (371)
T ss_dssp CSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHH
T ss_pred CCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHh
Confidence 23799999999 8999999853
|
| >1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=3.9e-08 Score=105.23 Aligned_cols=85 Identities=13% Similarity=0.242 Sum_probs=71.8
Q ss_pred cCeeeeccCceEEEEEE--CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCc------ceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATL--DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPN------LVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~--~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~n------iv~l~g~~~~~~~~~~~lv 808 (832)
...||+|+||.||+|+. .+|+.||||+++.. ....+.+.+|++++.+++|++ ++++++++...+. .++|
T Consensus 19 ~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~--~~lv 95 (339)
T 1z57_A 19 VDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGH--ICIV 95 (339)
T ss_dssp EEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTE--EEEE
T ss_pred EEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCc--EEEE
Confidence 67899999999999986 37899999999643 234567889999998887665 9999999987776 9999
Q ss_pred EecCCCCCHHHHHhcCC
Q 003307 809 SNYINAQSLAVYLQGKG 825 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~ 825 (832)
|||+ +|+|.+++...+
T Consensus 96 ~e~~-~~~l~~~l~~~~ 111 (339)
T 1z57_A 96 FELL-GLSTYDFIKENG 111 (339)
T ss_dssp EECC-CCBHHHHHHHTT
T ss_pred EcCC-CCCHHHHHHhcC
Confidence 9999 899999998765
|
| >1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=3.9e-08 Score=107.90 Aligned_cols=91 Identities=10% Similarity=0.115 Sum_probs=70.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCC--------CCcceeeeeEEECC--CCceE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIK--------HPNLVSLQGYYWGP--KEHEK 805 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~--------H~niv~l~g~~~~~--~~~~~ 805 (832)
...||+|+||.||+|+. .+|+.||||+++.. ....+.+.+|++++.+++ |+||+++++++... +....
T Consensus 42 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~ 120 (397)
T 1wak_A 42 IRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHI 120 (397)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEETTEEEE
T ss_pred EEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCCCCceE
Confidence 56899999999999987 47899999999643 334567899999999886 88899999998732 11238
Q ss_pred EEEEecCCCCCHHHHHhcC--CCccc
Q 003307 806 LVISNYINAQSLAVYLQGK--GLVLW 829 (832)
Q Consensus 806 ~lv~e~~~~GsL~~~l~~~--~~l~w 829 (832)
++||||| +|+|.+++... +.+++
T Consensus 121 ~lv~e~~-~~~l~~~~~~~~~~~~~~ 145 (397)
T 1wak_A 121 CMVFEVL-GHHLLKWIIKSNYQGLPL 145 (397)
T ss_dssp EEEECCC-CCBHHHHHHHTTTSCCCH
T ss_pred EEEEecc-CccHHHHHHhcccCCCCH
Confidence 9999999 56777776544 34554
|
| >3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.8e-08 Score=107.57 Aligned_cols=83 Identities=22% Similarity=0.346 Sum_probs=55.0
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC-----ceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE-----HEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~-----~~~~lv~e 810 (832)
...||+|+||.||+|+.. +|+.||||++..... ....+.+|++.+.+++|||||+++++|..... ...++|||
T Consensus 28 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~~lv~e 106 (360)
T 3e3p_A 28 ERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPR-FRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDRRDIYLNVVME 106 (360)
T ss_dssp C----------CEEEEETTTCCEEEEEEEECCTT-CCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCTTCEEEEEEEE
T ss_pred EEEEecCCCeEEEEEEECCCCCEEEEEEEecCcc-ccHHHHHHHHHHHhcCCCCcccHHHhhhccccccccceeEEEEee
Confidence 678999999999999984 799999998854322 23456788888999999999999999865322 12689999
Q ss_pred cCCCCCHHHHH
Q 003307 811 YINAQSLAVYL 821 (832)
Q Consensus 811 ~~~~GsL~~~l 821 (832)
|+++ +|.+.+
T Consensus 107 ~~~~-~l~~~~ 116 (360)
T 3e3p_A 107 YVPD-TLHRCC 116 (360)
T ss_dssp CCSC-BHHHHH
T ss_pred cccc-cHHHHH
Confidence 9996 554443
|
| >2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.62 E-value=6.9e-08 Score=102.38 Aligned_cols=90 Identities=16% Similarity=0.240 Sum_probs=62.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC-hhh-HHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI-AKG-KKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-~~~-~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
...||+|+||.||+|+.. +|+.||||++.... ... .+.+.++..++..++||||+++++++...+. .++||||+
T Consensus 30 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~--~~lv~e~~- 106 (318)
T 2dyl_A 30 LGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTD--VFIAMELM- 106 (318)
T ss_dssp EEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSE--EEEEECCC-
T ss_pred cceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCc--EEEEEecc-
Confidence 568999999999999985 89999999996442 222 2334555567888999999999999998776 99999999
Q ss_pred CCCHHHHHhc-CCCccc
Q 003307 814 AQSLAVYLQG-KGLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~-~~~l~w 829 (832)
++.+..+... ...+++
T Consensus 107 ~~~~~~l~~~~~~~~~~ 123 (318)
T 2dyl_A 107 GTCAEKLKKRMQGPIPE 123 (318)
T ss_dssp SEEHHHHHHHHTSCCCH
T ss_pred CCcHHHHHHHhccCCCH
Confidence 4556555443 344444
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.9e-06 Score=91.22 Aligned_cols=78 Identities=12% Similarity=0.160 Sum_probs=36.3
Q ss_pred cccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEecc
Q 003307 355 YVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLS 434 (832)
Q Consensus 355 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 434 (832)
.|+.+.+..+ ++.+....|.++.+|+.+.+..+ ++......|.++.+|+.+.+.++.++.+...+|.++.+|+.++|.
T Consensus 241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 4444544433 33333444555555555555432 332333444555555555555554444444445555555554443
|
| >4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A | Back alignment and structure |
|---|
Probab=98.59 E-value=5.6e-08 Score=101.88 Aligned_cols=90 Identities=13% Similarity=0.088 Sum_probs=70.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+. .+|+.||||++..... .+++.+|++++.+++|++++..+++|...+. ..++||||+ +|
T Consensus 14 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~-~~~lv~e~~-~~ 89 (296)
T 4hgt_A 14 GRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGD-YNVMVMELL-GP 89 (296)
T ss_dssp EEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETT-EEEEEEECC-CC
T ss_pred eeeecCCCCeEEEEEEEcCCCceEEEEeeccccc--chHHHHHHHHHHHhcCCCCCCeeeeecCCCC-ceEEEEEcc-CC
Confidence 67899999999999997 5899999998744322 2358899999999999998888877754332 389999999 99
Q ss_pred CHHHHHhc-CCCcccc
Q 003307 816 SLAVYLQG-KGLVLWF 830 (832)
Q Consensus 816 sL~~~l~~-~~~l~w~ 830 (832)
+|.+++.. .+.++|.
T Consensus 90 ~L~~~~~~~~~~~~~~ 105 (296)
T 4hgt_A 90 SLEDLFNFCSRKFSLK 105 (296)
T ss_dssp BHHHHHHHTTSCCCHH
T ss_pred CHHHHHHHhcCCCCHH
Confidence 99999984 3445553
|
| >3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} | Back alignment and structure |
|---|
Probab=98.57 E-value=1e-07 Score=106.82 Aligned_cols=89 Identities=12% Similarity=0.086 Sum_probs=69.1
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcc-eeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNL-VSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~ni-v~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||.||+|+. .+|+.||||++..... ..++..|++++..++|++. +.+..++...+. .++||||+ +
T Consensus 12 ~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~--~~lvme~~-g 86 (483)
T 3sv0_A 12 GRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVEGDY--NVLVMDLL-G 86 (483)
T ss_dssp CCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTE--EEEEEECC-C
T ss_pred EEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCE--EEEEEECC-C
Confidence 67899999999999997 5899999998754322 2358899999999988554 455555555554 89999999 8
Q ss_pred CCHHHHHhc-CCCcccc
Q 003307 815 QSLAVYLQG-KGLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~-~~~l~w~ 830 (832)
|+|.++++. .+.++|.
T Consensus 87 ~sL~~ll~~~~~~l~~~ 103 (483)
T 3sv0_A 87 PSLEDLFNFCSRKLSLK 103 (483)
T ss_dssp CBHHHHHHHTTTCCCHH
T ss_pred CCHHHHHHhhcCCCCHH
Confidence 999999985 4456654
|
| >2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.4e-07 Score=102.93 Aligned_cols=89 Identities=18% Similarity=0.184 Sum_probs=71.8
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCC-CC-----cceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIK-HP-----NLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~-H~-----niv~l~g~~~~~~~~~~~lv~ 809 (832)
...||+|+||.||+|+.. +|+.||||+++.. ....+++..|++++..++ |+ +++++++++...+. .++||
T Consensus 59 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~--~~lv~ 135 (382)
T 2vx3_A 59 DSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNH--LCLVF 135 (382)
T ss_dssp EEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTE--EEEEE
T ss_pred EEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCc--eEEEE
Confidence 678999999999999974 7899999999643 233566788888888774 44 49999999988776 99999
Q ss_pred ecCCCCCHHHHHhcCC--Cccc
Q 003307 810 NYINAQSLAVYLQGKG--LVLW 829 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~--~l~w 829 (832)
||++ |+|.+++.... .++|
T Consensus 136 e~~~-~~L~~~l~~~~~~~~~~ 156 (382)
T 2vx3_A 136 EMLS-YNLYDLLRNTNFRGVSL 156 (382)
T ss_dssp ECCC-CBHHHHHHHTTTSCCCH
T ss_pred ecCC-CCHHHHHhhcCcCCCCH
Confidence 9997 59999998653 4554
|
| >1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A | Back alignment and structure |
|---|
Probab=98.52 E-value=7.1e-08 Score=104.86 Aligned_cols=86 Identities=13% Similarity=0.161 Sum_probs=71.1
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCC-----------CCcceeeeeEEECCCC--
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIK-----------HPNLVSLQGYYWGPKE-- 802 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~-----------H~niv~l~g~~~~~~~-- 802 (832)
...||+|+||.||+|+. .+|+.||||++... ....+.+.+|++++.+++ ||||+++++++...+.
T Consensus 24 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 102 (373)
T 1q8y_A 24 VRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNG 102 (373)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTE
T ss_pred EEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhccCCCC
Confidence 67899999999999997 58999999999643 234567889999998886 8999999999875431
Q ss_pred ceEEEEEecCCCCCHHHHHhcC
Q 003307 803 HEKLVISNYINAQSLAVYLQGK 824 (832)
Q Consensus 803 ~~~~lv~e~~~~GsL~~~l~~~ 824 (832)
...++||||+ +|+|.+++...
T Consensus 103 ~~~~lv~e~~-~~~L~~~~~~~ 123 (373)
T 1q8y_A 103 VHVVMVFEVL-GENLLALIKKY 123 (373)
T ss_dssp EEEEEEECCC-CEEHHHHHHHT
T ss_pred ceEEEEEecC-CCCHHHHHHHh
Confidence 1389999999 89999999763
|
| >4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=98.51 E-value=8.9e-08 Score=104.89 Aligned_cols=79 Identities=22% Similarity=0.416 Sum_probs=61.3
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC----ceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE----HEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~----~~~~lv~e~~ 812 (832)
..+||+|+||.||+|+...+..||||++..... ...+|++++++++|||||+++++|..... ...++|||||
T Consensus 45 ~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~e~~ 120 (394)
T 4e7w_A 45 CKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYV 120 (394)
T ss_dssp EEEEEEETTEEEEEEEETTTEEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEEEECC
T ss_pred eEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEEeecc
Confidence 678999999999999987666799998854322 12379999999999999999999864332 1267999999
Q ss_pred CCCCHHH
Q 003307 813 NAQSLAV 819 (832)
Q Consensus 813 ~~GsL~~ 819 (832)
+++.+..
T Consensus 121 ~~~l~~~ 127 (394)
T 4e7w_A 121 PETVYRA 127 (394)
T ss_dssp SEEHHHH
T ss_pred CccHHHH
Confidence 9754433
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=3e-08 Score=95.96 Aligned_cols=115 Identities=13% Similarity=0.120 Sum_probs=82.5
Q ss_pred ccccCCCCCCEEEcCCC-CCccc----CC-CCCCCCCCCEEECCCCCCCcc----CcccccCCCCCCEEEccccccccc-
Q 003307 84 PTIIGLKMLCNVSVSNN-QLMGN----IT-DIGSIQSLEFLDLSHNLFHGL----IPSGIVSLKNLMLLNISSNSFEGT- 152 (832)
Q Consensus 84 ~~~~~l~~L~~L~Ls~n-~l~~~----~~-~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~- 152 (832)
..+...+.|++|+|++| .+... +. .+...++|++|+|++|.|... +...+...+.|++|+|++|.|+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34566788888888888 77643 12 456678888999999888753 234455567888888888888753
Q ss_pred ---CCCCCCCCCCCCEeeC--cCCCCCCc----cchhhhcCCCCCEEECccCcCc
Q 003307 153 ---FPSGFGGLGKLKYLDL--RANRFGGD----IMHLLSQLGSVVHVDLSNNQFS 198 (832)
Q Consensus 153 ---~p~~~~~l~~L~~L~L--~~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~ 198 (832)
+...+...++|++|+| ++|.|+.. +...+...++|++|+|++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3456677788888888 77888754 3345566678888888888775
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.6e-08 Score=102.76 Aligned_cols=105 Identities=22% Similarity=0.239 Sum_probs=78.0
Q ss_pred cccCCCCCCE--EEcCCCCCc---ccCC-CCCCCCCCCEEECCCCCCCcc--CcccccCCCCCCEEEcccccccccCCCC
Q 003307 85 TIIGLKMLCN--VSVSNNQLM---GNIT-DIGSIQSLEFLDLSHNLFHGL--IPSGIVSLKNLMLLNISSNSFEGTFPSG 156 (832)
Q Consensus 85 ~~~~l~~L~~--L~Ls~n~l~---~~~~-~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 156 (832)
.+...+.|.. ++++.|... +..+ ....+++|+.|+|++|+|+++ +|..+..+++|+.|+|++|+|++. ..
T Consensus 136 ~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~ 213 (267)
T 3rw6_A 136 GLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RE 213 (267)
T ss_dssp TGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GG
T ss_pred HcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hh
Confidence 3444455555 677777433 2222 225689999999999999984 456778899999999999999975 33
Q ss_pred CCCCC--CCCEeeCcCCCCCCccc-------hhhhcCCCCCEEE
Q 003307 157 FGGLG--KLKYLDLRANRFGGDIM-------HLLSQLGSVVHVD 191 (832)
Q Consensus 157 ~~~l~--~L~~L~L~~N~l~~~~~-------~~l~~l~~L~~L~ 191 (832)
+..+. +|++|+|++|.+.+.+| ..+..+++|+.||
T Consensus 214 l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 214 LDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 44444 99999999999987554 3578899999887
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.3e-07 Score=108.28 Aligned_cols=89 Identities=10% Similarity=-0.052 Sum_probs=65.3
Q ss_pred eeeccCceEEEEE-ECCCCEEEEEEeccCC----------hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEE
Q 003307 740 IGRSCHGTLYKAT-LDSGSILAVKRLREGI----------AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLV 807 (832)
Q Consensus 740 iG~G~~g~Vy~~~-~~~g~~vAvK~l~~~~----------~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~l 807 (832)
.+.|+.|.+++++ +-.|+.+|||.+.... ....++|.+|+++|+++ .|+||+++++|+.+... .||
T Consensus 242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~--~yL 319 (569)
T 4azs_A 242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQS--GWL 319 (569)
T ss_dssp -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSE--EEE
T ss_pred cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCE--EEE
Confidence 4556666666554 2368999999985321 12346799999999999 79999999999998777 999
Q ss_pred EEecCCCCCHHHHHhcCCCcccc
Q 003307 808 ISNYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 808 v~e~~~~GsL~~~l~~~~~l~w~ 830 (832)
||||++||+|.++|...+.++.+
T Consensus 320 VMEyv~G~~L~d~i~~~~~l~~~ 342 (569)
T 4azs_A 320 VMEKLPGRLLSDMLAAGEEIDRE 342 (569)
T ss_dssp EEECCCSEEHHHHHHTTCCCCHH
T ss_pred EEecCCCCcHHHHHHhCCCCCHH
Confidence 99999999999999988877643
|
| >2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=2.6e-07 Score=99.49 Aligned_cols=89 Identities=16% Similarity=0.191 Sum_probs=71.3
Q ss_pred cCeeeeccCceEEEEEEC-CC-CEEEEEEeccCChhhHHHHHHHHHHHhcCCCCc------ceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SG-SILAVKRLREGIAKGKKEFAREVKKLGNIKHPN------LVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g-~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~n------iv~l~g~~~~~~~~~~~lv 808 (832)
...||+|+||.||+|+.. ++ +.||||+++.. ....+.+.+|++++.+++|++ ++.+++++...+. .++|
T Consensus 24 ~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--~~lv 100 (355)
T 2eu9_A 24 VGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGH--MCIA 100 (355)
T ss_dssp EEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTE--EEEE
T ss_pred EEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCe--EEEE
Confidence 678999999999999974 44 68999999643 234567889999999888776 8999999987776 9999
Q ss_pred EecCCCCCHHHHHhcCC--Cccc
Q 003307 809 SNYINAQSLAVYLQGKG--LVLW 829 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~--~l~w 829 (832)
|||+ +|++.+++.... .++|
T Consensus 101 ~e~~-~~~l~~~l~~~~~~~~~~ 122 (355)
T 2eu9_A 101 FELL-GKNTFEFLKENNFQPYPL 122 (355)
T ss_dssp EECC-CCBHHHHHHHTTTCCCCH
T ss_pred Eecc-CCChHHHHHhccCCCCCH
Confidence 9999 567888776553 4554
|
| >1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.7e-07 Score=97.25 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=61.2
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCCh------------------hhHHHHHHHHHHHhcCCCCcceeeeeEEE
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIA------------------KGKKEFAREVKKLGNIKHPNLVSLQGYYW 798 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~------------------~~~~~f~~e~~~l~~~~H~niv~l~g~~~ 798 (832)
.+.||+|+||.||+|+..+|+.||||.++.... .....|.+|++++.+++ | +++.+++.
T Consensus 95 ~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~-~~v~~~~~ 171 (282)
T 1zar_A 95 GKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G-LAVPKVYA 171 (282)
T ss_dssp EEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T-SSSCCEEE
T ss_pred cCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C-CCcCeEEe
Confidence 478999999999999997899999999853221 13467999999999999 4 66666554
Q ss_pred CCCCceEEEEEecCCCCCHHH
Q 003307 799 GPKEHEKLVISNYINAQSLAV 819 (832)
Q Consensus 799 ~~~~~~~~lv~e~~~~GsL~~ 819 (832)
. +. .++|||||++|+|.+
T Consensus 172 ~-~~--~~lvmE~~~g~~L~~ 189 (282)
T 1zar_A 172 W-EG--NAVLMELIDAKELYR 189 (282)
T ss_dssp E-ET--TEEEEECCCCEEGGG
T ss_pred c-cc--eEEEEEecCCCcHHH
Confidence 3 33 699999999999987
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=3.3e-07 Score=88.56 Aligned_cols=118 Identities=17% Similarity=0.129 Sum_probs=56.3
Q ss_pred ccCCCCCCEEEccCC-cCCCC----cccccCCCCCCCEEEccCCcccccC----cccccCCCCCCeEeccCCcccccCCc
Q 003307 374 TSQFLRLTSFKVSNN-SLEGD----LPAVLGTYPELKVIDLSLNHLNGFL----LPSFFTSTKLTDLNLSGNNFSGPLPL 444 (832)
Q Consensus 374 ~~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~p~ 444 (832)
+...++|++|+|++| .|... +...+...++|++|+|++|.|.... ...+...+.|++|+|++|.|+..--.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344555555666555 55422 2333444556666666666664321 22233445666666666665531100
Q ss_pred ccccCCCCCcccCcccccEEEc--cCCcCcccC----ChhhhcCCCCCEEeCcCCcCc
Q 003307 445 QEIQNNPSTGSTQNLSLTSLDL--AYNSLSGRL----LPGISKFHNLVYLNLSNNKFE 496 (832)
Q Consensus 445 ~~~~~~~~~~~~~~~~L~~L~L--s~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~ 496 (832)
.+... ...+.+|++|+| ++|.|+... ...+...+.|+.|+|++|.+.
T Consensus 112 ~l~~~-----L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEA-----LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHG-----GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHH-----HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 00000 001113666666 556665432 223344466666666666653
|
| >1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=7.6e-06 Score=83.63 Aligned_cols=80 Identities=19% Similarity=0.196 Sum_probs=58.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCE--EEEEEeccCCh------------------------hhHHHHHHHHHHHhcCCCCc
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSI--LAVKRLREGIA------------------------KGKKEFAREVKKLGNIKHPN 789 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~--vAvK~l~~~~~------------------------~~~~~f~~e~~~l~~~~H~n 789 (832)
...||+|+||.||+|+. .+|+. ||||+++.... .....+.+|++.+.+++|++
T Consensus 52 ~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~ 131 (258)
T 1zth_A 52 GGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKEAG 131 (258)
T ss_dssp EEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHHhCC
Confidence 46799999999999998 68999 99998743211 11236889999999998886
Q ss_pred c--eeeeeEEECCCCceEEEEEecCCC-C----CHHHHHh
Q 003307 790 L--VSLQGYYWGPKEHEKLVISNYINA-Q----SLAVYLQ 822 (832)
Q Consensus 790 i--v~l~g~~~~~~~~~~~lv~e~~~~-G----sL~~~l~ 822 (832)
+ ...+++ .. .+|||||+.+ | +|.++..
T Consensus 132 i~~p~~~~~----~~--~~lVmE~~g~~g~~~~~L~~~~~ 165 (258)
T 1zth_A 132 VSVPQPYTY----MK--NVLLMEFIGEDELPAPTLVELGR 165 (258)
T ss_dssp CCCCCEEEE----ET--TEEEEECCEETTEECCBHHHHGG
T ss_pred CCCCeEEEc----CC--CEEEEEecCCCCCccccHHHHhh
Confidence 5 333332 23 6899999952 4 7777643
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.76 E-value=6.8e-06 Score=77.29 Aligned_cols=82 Identities=9% Similarity=0.077 Sum_probs=34.3
Q ss_pred CCCEEECCCCCCCccCcccccCCCCCCEEEccccc-ccccCCCCCCCC----CCCCEeeCcCCC-CCCccchhhhcCCCC
Q 003307 114 SLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNS-FEGTFPSGFGGL----GKLKYLDLRANR-FGGDIMHLLSQLGSV 187 (832)
Q Consensus 114 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~~~~~l~~l~~L 187 (832)
.|++|||+++.|+..--..+.++++|++|+|++|. |+..--..+..+ ++|++|+|++|. |+..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34444444444443333334444445555554442 332211122222 235555555442 443333334444455
Q ss_pred CEEECccC
Q 003307 188 VHVDLSNN 195 (832)
Q Consensus 188 ~~L~Ls~N 195 (832)
++|+|+++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55554444
|
| >3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=97.67 E-value=5.1e-05 Score=83.35 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=42.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCCh---hhHHHHHHHHHHHhcCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIA---KGKKEFAREVKKLGNIKH 787 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~f~~e~~~l~~~~H 787 (832)
+++||+|+||.||+|+. .+|+.||||++..... ...+.|.+|+.++..++|
T Consensus 83 ~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~ 137 (413)
T 3dzo_A 83 GTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRG 137 (413)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTT
T ss_pred ecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhcc
Confidence 67899999999999996 5899999999863222 235679999999999987
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.64 E-value=6.7e-06 Score=77.33 Aligned_cols=84 Identities=14% Similarity=0.192 Sum_probs=55.0
Q ss_pred CCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCC-CCCccchhhhcC----CCCCEEECccCc-CccccCCCCCCCC
Q 003307 136 LKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANR-FGGDIMHLLSQL----GSVVHVDLSNNQ-FSGSLDLGLGDSS 209 (832)
Q Consensus 136 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~l----~~L~~L~Ls~N~-l~~~~~~~~~~~~ 209 (832)
-.+|+.|||+++.|+..--..+.++++|++|+|++|. |+..--..++.+ ++|++|+|++|. ++. .++..+.
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD---~Gl~~L~ 136 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD---KGIIALH 136 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH---HHHHHGG
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH---HHHHHHh
Confidence 3578999999998886655667888999999999885 665555556654 367888887764 652 2222223
Q ss_pred CCCCccEEECCCC
Q 003307 210 FISSIQYLNISEN 222 (832)
Q Consensus 210 ~l~~L~~L~L~~N 222 (832)
.+++|+.|+++++
T Consensus 137 ~~~~L~~L~L~~c 149 (176)
T 3e4g_A 137 HFRNLKYLFLSDL 149 (176)
T ss_dssp GCTTCCEEEEESC
T ss_pred cCCCCCEEECCCC
Confidence 3455555555544
|
| >4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A | Back alignment and structure |
|---|
Probab=97.60 E-value=1.4e-05 Score=85.47 Aligned_cols=80 Identities=10% Similarity=0.130 Sum_probs=50.5
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCC--------------hhhHHHH--------HHHHHHHhcCCCCcceeee
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGI--------------AKGKKEF--------AREVKKLGNIKHPNLVSLQ 794 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~--------------~~~~~~f--------~~e~~~l~~~~H~niv~l~ 794 (832)
...||+|+||.||+|..++|+.||||+++... ....... .+|.+.|.++.+..+.-..
T Consensus 100 ~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~vp~ 179 (397)
T 4gyi_A 100 GSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFPVPE 179 (397)
T ss_dssp EEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCC
T ss_pred cCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 56899999999999998899999999874210 0011122 2455555555444332211
Q ss_pred eEEECCCCceEEEEEecCCCCCHHHH
Q 003307 795 GYYWGPKEHEKLVISNYINAQSLAVY 820 (832)
Q Consensus 795 g~~~~~~~~~~~lv~e~~~~GsL~~~ 820 (832)
-+.. .. .+|||||++++.|.++
T Consensus 180 p~~~-~~---~~LVME~i~G~~L~~l 201 (397)
T 4gyi_A 180 PIAQ-SR---HTIVMSLVDALPMRQV 201 (397)
T ss_dssp EEEE-ET---TEEEEECCSCEEGGGC
T ss_pred eeec-cC---ceEEEEecCCccHhhh
Confidence 1211 12 3699999999887654
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00012 Score=70.26 Aligned_cols=111 Identities=15% Similarity=0.129 Sum_probs=67.4
Q ss_pred cCCCCCCEEEcCCC-CCccc----CC-CCCCCCCCCEEECCCCCCCccC----cccccCCCCCCEEEccccccccc----
Q 003307 87 IGLKMLCNVSVSNN-QLMGN----IT-DIGSIQSLEFLDLSHNLFHGLI----PSGIVSLKNLMLLNISSNSFEGT---- 152 (832)
Q Consensus 87 ~~l~~L~~L~Ls~n-~l~~~----~~-~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~---- 152 (832)
.+-+.|+.|+|++| +|... +. .+..-+.|+.|+|++|.|...- ...+..-+.|++|+|++|.|...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 44566777888774 66432 11 3445567888888888776432 33344556788888888877642
Q ss_pred CCCCCCCCCCCCEeeCcCC---CCCC----ccchhhhcCCCCCEEECccCcC
Q 003307 153 FPSGFGGLGKLKYLDLRAN---RFGG----DIMHLLSQLGSVVHVDLSNNQF 197 (832)
Q Consensus 153 ~p~~~~~l~~L~~L~L~~N---~l~~----~~~~~l~~l~~L~~L~Ls~N~l 197 (832)
+-+++..-+.|++|+|++| .+.. .+.+.+..-+.|+.|+++.|.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2334555666888888755 3332 2344556667777777776654
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00017 Score=69.08 Aligned_cols=86 Identities=10% Similarity=0.152 Sum_probs=51.7
Q ss_pred CCCCCCCEEECCCC-CCCcc----CcccccCCCCCCEEEcccccccccCCCC----CCCCCCCCEeeCcCCCCCCc----
Q 003307 110 GSIQSLEFLDLSHN-LFHGL----IPSGIVSLKNLMLLNISSNSFEGTFPSG----FGGLGKLKYLDLRANRFGGD---- 176 (832)
Q Consensus 110 ~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~---- 176 (832)
..-+.|++|+|++| .|... +...+..-+.|+.|+|++|.|....-.+ +...+.|++|+|++|.|+..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34467888888875 66532 3345556677788888888776433223 33556677777777777643
Q ss_pred cchhhhcCCCCCEEECccC
Q 003307 177 IMHLLSQLGSVVHVDLSNN 195 (832)
Q Consensus 177 ~~~~l~~l~~L~~L~Ls~N 195 (832)
+.+.+..-+.|++|+|++|
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 2233444455666666543
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.004 Score=55.53 Aligned_cols=57 Identities=18% Similarity=0.196 Sum_probs=41.8
Q ss_pred CEEEccCCcCC-CCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCccc
Q 003307 381 TSFKVSNNSLE-GDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFS 439 (832)
Q Consensus 381 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 439 (832)
..++.+++.|+ ..+|..+. ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36677777775 34554332 46888888888888877777888888888888888764
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0047 Score=55.11 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=31.9
Q ss_pred EEECCCCCCC-ccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCC
Q 003307 117 FLDLSHNLFH-GLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFG 174 (832)
Q Consensus 117 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 174 (832)
.++.+++.++ ..+|..+. ++|++|+|++|+|+.+.+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666665 23343322 24666666666666555555666666666666666553
|
| >3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0031 Score=64.06 Aligned_cols=80 Identities=8% Similarity=-0.048 Sum_probs=61.5
Q ss_pred CeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
...+.|+.+.||+.... |..+++|............+.+|.+++..+. |..+.++++++...+. .++||||++|.+
T Consensus 20 ~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~--~~lv~e~i~G~~ 96 (263)
T 3tm0_A 20 KDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGW--SNLLMSEADGVL 96 (263)
T ss_dssp ECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTE--EEEEEECCSSEE
T ss_pred eeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCc--eEEEEEecCCee
Confidence 34677788899999864 7899999986422122345888999998874 6777889998876655 899999999999
Q ss_pred HHHH
Q 003307 817 LAVY 820 (832)
Q Consensus 817 L~~~ 820 (832)
|.+.
T Consensus 97 l~~~ 100 (263)
T 3tm0_A 97 CSEE 100 (263)
T ss_dssp HHHH
T ss_pred hhhc
Confidence 9875
|
| >1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0046 Score=62.56 Aligned_cols=73 Identities=12% Similarity=0.167 Sum_probs=55.8
Q ss_pred eeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcc--eeeeeEEECCCCceEEEEEecCCCCCHH
Q 003307 741 GRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNL--VSLQGYYWGPKEHEKLVISNYINAQSLA 818 (832)
Q Consensus 741 G~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~ni--v~l~g~~~~~~~~~~~lv~e~~~~GsL~ 818 (832)
+.|..+.||+....+|..++||..... ....+.+|++++..+++.++ .+++++....+. .++||||+++.+|.
T Consensus 29 ~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~--~~~v~e~i~G~~l~ 103 (264)
T 1nd4_A 29 IGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGR--DWLLLGEVPGQDLL 103 (264)
T ss_dssp CTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSC--EEEEEECCSSEETT
T ss_pred cCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCC--CEEEEEecCCcccC
Confidence 355569999998877888999987543 12457889999888865554 458888776655 89999999998874
|
| >3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.11 Score=53.17 Aligned_cols=73 Identities=19% Similarity=0.281 Sum_probs=52.0
Q ss_pred CeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCC---CcceeeeeEEECCCCceEEEEEecCCC
Q 003307 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKH---PNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H---~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
..+|.|..+.||+.++.||+.|.||+...........|.+|.+.|..+.- --+.+.+++. + -++||||++.
T Consensus 21 ~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~---~---~~lv~e~l~~ 94 (288)
T 3f7w_A 21 AERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD---D---RTLAMEWVDE 94 (288)
T ss_dssp EEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE---T---TEEEEECCCC
T ss_pred EecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc---C---ceEEEEeecc
Confidence 45899999999999999999999998754333333457889888876632 1234444432 2 4789999987
Q ss_pred CC
Q 003307 815 QS 816 (832)
Q Consensus 815 Gs 816 (832)
+.
T Consensus 95 ~~ 96 (288)
T 3f7w_A 95 RP 96 (288)
T ss_dssp CC
T ss_pred cC
Confidence 64
|
| >3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134} | Back alignment and structure |
|---|
Probab=92.01 E-value=0.1 Score=55.42 Aligned_cols=79 Identities=9% Similarity=0.146 Sum_probs=54.8
Q ss_pred CeeeeccCceEEEEEECCCCEEEEEEec--cCC-hhhHHHHHHHHHHHhcCC--CCcceeeeeEEECCCC-ceEEEEEec
Q 003307 738 EVIGRSCHGTLYKATLDSGSILAVKRLR--EGI-AKGKKEFAREVKKLGNIK--HPNLVSLQGYYWGPKE-HEKLVISNY 811 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~--~~~-~~~~~~f~~e~~~l~~~~--H~niv~l~g~~~~~~~-~~~~lv~e~ 811 (832)
..++.|.++.||+.... +..+++|+.. ... ......+.+|.+++..++ +..+.+++++|.+... +..++||||
T Consensus 44 ~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme~ 122 (359)
T 3dxp_A 44 EQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIMEF 122 (359)
T ss_dssp EECCC-CCSCEEEEECS-SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEEC
T ss_pred EEcCCcccceEEEEEEC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEEe
Confidence 45889999999999875 4678888775 322 122356888999998886 4567888988876521 127899999
Q ss_pred CCCCCH
Q 003307 812 INAQSL 817 (832)
Q Consensus 812 ~~~GsL 817 (832)
+++..+
T Consensus 123 v~G~~l 128 (359)
T 3dxp_A 123 VSGRVL 128 (359)
T ss_dssp CCCBCC
T ss_pred cCCeec
Confidence 998776
|
| >2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A* | Back alignment and structure |
|---|
Probab=89.03 E-value=0.42 Score=51.42 Aligned_cols=74 Identities=12% Similarity=0.043 Sum_probs=47.5
Q ss_pred CeeeeccCceEEEEEEC-CCCEEEEEEeccCCh-------hhHHHHHHHHHHHhcCCC--Ccce-eeeeEEECCCCceEE
Q 003307 738 EVIGRSCHGTLYKATLD-SGSILAVKRLREGIA-------KGKKEFAREVKKLGNIKH--PNLV-SLQGYYWGPKEHEKL 806 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~-------~~~~~f~~e~~~l~~~~H--~niv-~l~g~~~~~~~~~~~ 806 (832)
..+|.|.++.||++... +++.++||....... .....+..|.+++..+.+ +..| +++.+ +.+. .+
T Consensus 36 ~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~--~~ 111 (397)
T 2olc_A 36 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEM--AV 111 (397)
T ss_dssp EECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTT--TE
T ss_pred EECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCc--cE
Confidence 46899999999999764 578999997643211 112346778888876632 4444 45543 2344 68
Q ss_pred EEEecCCCC
Q 003307 807 VISNYINAQ 815 (832)
Q Consensus 807 lv~e~~~~G 815 (832)
+||||+++.
T Consensus 112 lvmE~l~g~ 120 (397)
T 2olc_A 112 TVMEDLSHL 120 (397)
T ss_dssp EEECCCTTS
T ss_pred EEEEeCCCc
Confidence 999999864
|
| >3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT} | Back alignment and structure |
|---|
Probab=87.53 E-value=1.2 Score=45.96 Aligned_cols=74 Identities=12% Similarity=0.055 Sum_probs=56.8
Q ss_pred CeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCC---CCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIK---HPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~---H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
..|+.|.+..+|+... ++..++||+.... ....|.+|.+.|+.+. ...+.+.++++...+. .++||||+++
T Consensus 42 ~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~--~~lvme~l~G 115 (312)
T 3jr1_A 42 EKLYSGEMNEIWLIND-EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGH--SFLLLEALNK 115 (312)
T ss_dssp EEECCSSSSEEEEEES-SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSE--EEEEEECCCC
T ss_pred EEeCCccceeeeEEEE-CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCc--eEEEEEeccC
Confidence 3588999999999886 4678889987532 2456888988887763 3567788888876555 8999999998
Q ss_pred CCH
Q 003307 815 QSL 817 (832)
Q Consensus 815 GsL 817 (832)
..+
T Consensus 116 ~~~ 118 (312)
T 3jr1_A 116 SKN 118 (312)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
|
| >4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A* | Back alignment and structure |
|---|
Probab=87.32 E-value=1.4 Score=44.21 Aligned_cols=78 Identities=14% Similarity=0.189 Sum_probs=56.3
Q ss_pred eeeeccCc-eEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 739 VIGRSCHG-TLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 739 ~iG~G~~g-~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+..|..| .||+.... ++..+.||+-... ...++.+|.+.|+.+. +--+.++++++...+. .++|||++++.
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~--~~lvme~l~G~ 105 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDD--AWLLTTAIPGK 105 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTE--EEEEEECCCSE
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCe--EEEEEEeeCCc
Confidence 35556665 69998764 5678899986432 3456888998887663 3335678888887766 89999999998
Q ss_pred CHHHHH
Q 003307 816 SLAVYL 821 (832)
Q Consensus 816 sL~~~l 821 (832)
++.+..
T Consensus 106 ~~~~~~ 111 (272)
T 4gkh_A 106 TAFQVL 111 (272)
T ss_dssp EHHHHH
T ss_pred cccccc
Confidence 877654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 832 | ||||
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 4e-21 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 5e-12 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-07 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 4e-07 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 3e-17 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-14 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-13 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-09 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 3e-09 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-08 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-05 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 6e-13 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 9e-13 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-11 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-10 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-09 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-08 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-05 | |
| d1qpca_ | 272 | d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom | 8e-13 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 8e-13 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 5e-11 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-10 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 3e-10 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 8e-05 | |
| d1k2pa_ | 258 | d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum | 5e-12 | |
| d1sm2a_ | 263 | d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu | 5e-12 | |
| d1byga_ | 262 | d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) | 1e-11 | |
| d1fmka3 | 285 | d.144.1.7 (A:249-533) c-src tyrosine kinase {Human | 2e-10 | |
| d1s9ja_ | 322 | d.144.1.7 (A:) Dual specificity mitogen-activated | 3e-10 | |
| d1uwha_ | 276 | d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) | 3e-10 | |
| d1koaa2 | 350 | d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C | 3e-10 | |
| d1koba_ | 352 | d.144.1.7 (A:) Twitchin, kinase domain {California | 4e-10 | |
| d1u5ra_ | 309 | d.144.1.7 (A:) Serine/threonine protein kinase TAO | 7e-10 | |
| d1u59a_ | 285 | d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum | 1e-09 | |
| d1o6ya_ | 277 | d.144.1.7 (A:) Mycobacterial protein kinase PknB, | 1e-09 | |
| d1vjya_ | 303 | d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human | 2e-09 | |
| d1opja_ | 287 | d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou | 2e-09 | |
| d2java1 | 269 | d.144.1.7 (A:3-271) Serine/threonine-protein kinas | 2e-09 | |
| d1q5ka_ | 350 | d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs | 2e-09 | |
| d2jfla1 | 288 | d.144.1.7 (A:21-308) STE20-like serine/threonine-p | 2e-09 | |
| d1a06a_ | 307 | d.144.1.7 (A:) Calmodulin-dependent protein kinase | 2e-09 | |
| d1t4ha_ | 270 | d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa | 2e-09 | |
| d1jpaa_ | 299 | d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou | 2e-09 | |
| d1r0pa_ | 311 | d.144.1.7 (A:) Hepatocyte growth factor receptor, | 3e-09 | |
| d1xbba_ | 277 | d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human | 3e-09 | |
| d1yhwa1 | 293 | d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [ | 3e-09 | |
| d1ob3a_ | 286 | d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod | 4e-09 | |
| d1t46a_ | 311 | d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens | 4e-09 | |
| d1nvra_ | 271 | d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 { | 5e-09 | |
| d1u46a_ | 273 | d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum | 6e-09 | |
| d1pmea_ | 345 | d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien | 7e-09 | |
| d1lufa_ | 301 | d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n | 1e-08 | |
| d1mp8a_ | 273 | d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma | 2e-08 | |
| d1mqba_ | 283 | d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum | 2e-08 | |
| d1tkia_ | 321 | d.144.1.7 (A:) Titin, kinase domain {Human (Homo s | 2e-08 | |
| d1fvra_ | 309 | d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [ | 3e-08 | |
| d1p4oa_ | 308 | d.144.1.7 (A:) Insulin-like growth factor 1 recept | 6e-08 | |
| d1cm8a_ | 346 | d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s | 1e-07 | |
| d2gfsa1 | 348 | d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa | 1e-07 | |
| d3bqca1 | 328 | d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu | 2e-07 | |
| d1ua2a_ | 299 | d.144.1.7 (A:) Cell division protein kinase 7, CDK | 2e-07 | |
| d1fota_ | 316 | d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni | 2e-07 | |
| d2ozaa1 | 335 | d.144.1.7 (A:51-385) MAP kinase activated protein | 2e-07 | |
| d1ywna1 | 299 | d.144.1.7 (A:818-1166) Vascular endothelial growth | 3e-07 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 3e-07 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 6e-06 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 3e-04 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 6e-04 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 7e-04 | |
| d1jksa_ | 293 | d.144.1.7 (A:) Death-associated protein kinase, Da | 3e-07 | |
| d1uu3a_ | 288 | d.144.1.7 (A:) 3-phosphoinositide dependent protei | 4e-07 | |
| d1unla_ | 292 | d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H | 5e-07 | |
| d1gz8a_ | 298 | d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H | 5e-07 | |
| d1xkka_ | 317 | d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb- | 5e-07 | |
| d1rjba_ | 325 | d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s | 6e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 9e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.001 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.001 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.002 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.004 | |
| d1fgka_ | 299 | d.144.1.7 (A:) Fibroblast growth factor receptor 1 | 1e-06 | |
| d1omwa3 | 364 | d.144.1.7 (A:186-549) G-protein coupled receptor k | 2e-06 | |
| d1xjda_ | 320 | d.144.1.7 (A:) Protein kinase C, theta type {Human | 2e-06 | |
| d2j4za1 | 263 | d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur | 2e-06 | |
| d1o6la_ | 337 | d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap | 2e-06 | |
| d2b1pa1 | 355 | d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3 | 2e-06 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 3e-06 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 6e-06 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 8e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 3e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 3e-04 | |
| d1ckia_ | 299 | d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n | 6e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 8e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 6e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 6e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 8e-05 | |
| d1blxa_ | 305 | d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H | 9e-06 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 1e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 5e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.001 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.004 | |
| d3blha1 | 318 | d.144.1.7 (A:8-325) Cell division protein kinase 9 | 1e-05 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 1e-05 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 1e-04 | |
| d1xwsa_ | 273 | d.144.1.7 (A:) Proto-oncogene serine/threonine-pro | 2e-05 | |
| d1rdqe_ | 350 | d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni | 2e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 2e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 9e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 3e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.002 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.002 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.002 | |
| d1vzoa_ | 322 | d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5 | 6e-05 | |
| d1zara2 | 191 | d.144.1.9 (A:91-281) Rio2 serine protein kinase C- | 1e-04 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 4e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 8e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.002 | |
| d1csna_ | 293 | d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast | 0.001 | |
| d1q8ya_ | 362 | d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces | 0.001 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 0.002 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 0.004 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 92.9 bits (229), Expect = 4e-21
Identities = 70/323 (21%), Positives = 121/323 (37%), Gaps = 23/323 (7%)
Query: 19 SDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITCTN----GYVTSIMLND 74
D +ALLQ+KK + +P+ + SW ++D C R W G+ C V ++ L+
Sbjct: 6 QDKQALLQIKKDL-GNPT--TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSG 59
Query: 75 MGLVGNFSFPTIIG-LKMLCNVSVSN--NQLMGNITDIGSIQSLEFLDLSHNLFHGLIPS 131
+ L + P+ + L L + + N + I + L +L ++H G IP
Sbjct: 60 LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119
Query: 132 GIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVD 191
+ +K L+ L+ S N+ GT P L L + NR G I
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS-----FSK 174
Query: 192 LSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLV 251
L + L +++ + + + E N + + N L
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234
Query: 252 GAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITS-AT 310
+ +L L L +N++ G+LP L Q L L++S N L G + +
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF--LHSLNVSFNNLCGEIPQGGNLQR 292
Query: 311 LKKVNLSSNKLSGSLPARVGHCT 333
++NK P + CT
Sbjct: 293 FDVSAYANNKCLCGSP--LPACT 313
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 65.5 bits (158), Expect = 5e-12
Identities = 55/255 (21%), Positives = 100/255 (39%), Gaps = 25/255 (9%)
Query: 311 LKKVNLSSNKLSG--SLPARVGHCT---IVDLSNN-RLSGDLSRMQNWGNYVEDIHLSSN 364
+ ++LS L +P+ + + + + L G + + ++++
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 365 FLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFT 424
++G +P+ SQ L + S N+L G LP + + P L I N ++G + S+ +
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171
Query: 425 STKLTDLNLSGNN--------------FSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNS 470
+KL N + + + ++ + T +
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231
Query: 471 LSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPN--GLKEFNVSFNNLSGVVPE--NLR 526
L + NL L+L NN+ G++P GL L NVSFNNL G +P+ NL+
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291
Query: 527 NFPDSAFHPGNSLLT 541
F SA+ N L
Sbjct: 292 RFDVSAYA-NNKCLC 305
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 52.1 bits (123), Expect = 1e-07
Identities = 46/276 (16%), Positives = 82/276 (29%), Gaps = 15/276 (5%)
Query: 207 DSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASN--NHLVGAIPSFNFVFSLR 264
+ + L++S +L + L N + P+ + L
Sbjct: 45 TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104
Query: 265 ILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGS 324
L + +SG++P L Q +++ + + P + L + N++SG+
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 325 LPARVGHCTIVDLSNNRLSGDLSRMQNW--GNYVEDIHLSSNFLTGMVPNQTSQFLRLTS 382
+P G + + S L+ N S + + + T
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224
Query: 383 FKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPL 442
+ +G L +DL N + G L L LN+S NN G +
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Query: 443 PLQEIQNNPSTGSTQNLSLTSLDLAYNS-LSGRLLP 477
P A N L G LP
Sbjct: 285 P----------QGGNLQRFDVSAYANNKCLCGSPLP 310
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 50.1 bits (118), Expect = 4e-07
Identities = 59/264 (22%), Positives = 94/264 (35%), Gaps = 18/264 (6%)
Query: 244 DASNNHLVGAIPSFNFVFSLRILRL----GSNQLSGSLPVALLQESSMMLSELDLSLNQL 299
D S +L P + + +L L G N L G +P A+ + + + + +
Sbjct: 56 DLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG 115
Query: 300 EGPVGSITSATLKKVNLSSNKLSGSLPARVGHCT---IVDLSNNRLSGDLSRMQNWGNYV 356
P TL ++ S N LSG+LP + + NR+SG + + +
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175
Query: 357 EDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNG 416
S T L L +S N LEGD + G+ + I L+ N L
Sbjct: 176 FTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235
Query: 417 FLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLL 476
L + +L N G LP Q + L SL++++N+L G +
Sbjct: 236 DLGKVGLSKNLNGL-DLRNNRIYGTLP-QGLTQLKF--------LHSLNVSFNNLCGEI- 284
Query: 477 PGISKFHNLVYLNLSNNKFEGSIP 500
P +NNK P
Sbjct: 285 PQGGNLQRFDVSAYANNKCLCGSP 308
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 82.4 bits (202), Expect = 3e-17
Identities = 64/378 (16%), Positives = 119/378 (31%), Gaps = 40/378 (10%)
Query: 105 NITDIGS---IQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLG 161
N+TD S + + L + G+ L NL +N S+N P L
Sbjct: 33 NVTDTVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLT 88
Query: 162 KLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISE 221
KL + + N+ + + + + L + S ++
Sbjct: 89 KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS 148
Query: 222 NSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRI---------LRLGSNQ 272
A+ L S N V + + L +NQ
Sbjct: 149 ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ 208
Query: 273 LSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLP-ARVGH 331
+S P L EL L+ NQL+ + L ++L++N++S P + +
Sbjct: 209 ISDITP----LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK 264
Query: 332 CTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLE 391
T + L N++S + +L N + S LT + N++
Sbjct: 265 LTELKLGANQISN----ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 320
Query: 392 GDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNP 451
P + + +L+ + + N ++ + S T + L+ N S PL +
Sbjct: 321 DISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTR-- 374
Query: 452 STGSTQNLSLTSLDLAYN 469
+T L L
Sbjct: 375 ---------ITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 74.3 bits (181), Expect = 1e-14
Identities = 61/391 (15%), Positives = 131/391 (33%), Gaps = 37/391 (9%)
Query: 135 SLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHL--LSQLGSVVHVDL 192
+L M + + T L ++ L I + + L ++ ++
Sbjct: 20 ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLG----IKSIDGVEYLNNLTQINF 73
Query: 193 SNNQFSGSLDLG-------LGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDA 245
SNNQ + L + ++ + + +L G ++ + D L+
Sbjct: 74 SNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133
Query: 246 SNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGS 305
N + + + + L + + L LD+S N++
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193
Query: 306 ITSATLKKVNLSSNKLSGSLPARVGHC-TIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSN 364
L+ + ++N++S P + + L+ N+L + + + N + D+ L++N
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-IGTLASLTN-LTDLDLANN 251
Query: 365 FLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFT 424
++ + P S +LT K+ N + P T LN +
Sbjct: 252 QISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNL----ELNENQLEDISPISN 305
Query: 425 STKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHN 484
LT L L NN S P+ + L L A N +S + ++ N
Sbjct: 306 LKNLTYLTLYFNNISDISPVSSLTK-----------LQRLFFANNKVSD--VSSLANLTN 352
Query: 485 LVYLNLSNNKFEGSIPDGLPNGLKEFNVSFN 515
+ +L+ +N+ P + + ++
Sbjct: 353 INWLSAGHNQISDLTPLANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 71.2 bits (173), Expect = 1e-13
Identities = 66/374 (17%), Positives = 122/374 (32%), Gaps = 46/374 (12%)
Query: 182 SQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLE 241
+ L + L + ++ + + + L + DG+ Y +NL
Sbjct: 19 TALAEKMKTVLGKTNVTDTVSQ-----TDLDQVTTLQADRLGIKSI----DGVEYLNNLT 69
Query: 242 VFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG 301
+ SNN L P N L + + +NQ++ P+A L + + + +
Sbjct: 70 QINFSNNQLTDITPLKNLT-KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL 128
Query: 302 PVGSITSATLKKVNL-------SSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGN 354
+ + N S L + L+N L N +
Sbjct: 129 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS 188
Query: 355 YVED---------IHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELK 405
+ + ++N ++ + P L ++ N L+ L + L
Sbjct: 189 DISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLT 244
Query: 406 VIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLS----- 460
+DL+ N ++ L TKLT+L L N S PL + + +N
Sbjct: 245 DLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP 302
Query: 461 ------LTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSF 514
LT L L +N++S + +S L L +NNK + +
Sbjct: 303 ISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGH 360
Query: 515 NNLSGVVP-ENLRN 527
N +S + P NL
Sbjct: 361 NQISDLTPLANLTR 374
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 58.1 bits (139), Expect = 2e-09
Identities = 31/175 (17%), Positives = 56/175 (32%), Gaps = 11/175 (6%)
Query: 1 MQTVSLIVLLLVVNALGQSDFEALLQLKKGIAKDPSG----QIIDSWDTKSLSSDGCPRN 56
+L L L N L D L L D + + L+ N
Sbjct: 216 GILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN 273
Query: 57 WFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLE 116
+T++ ++ I LK L +++ N + I+ + S+ L+
Sbjct: 274 QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD-ISPVSSLTKLQ 332
Query: 117 FLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRAN 171
L ++N S + +L N+ L+ N P L ++ L L
Sbjct: 333 RLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 57.3 bits (137), Expect = 3e-09
Identities = 29/150 (19%), Positives = 59/150 (39%), Gaps = 7/150 (4%)
Query: 46 KSLSSDGCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGN 105
+L+ N +T + +G + + GL L N+ ++ NQ + +
Sbjct: 241 TNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ-LED 299
Query: 106 ITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKY 165
I+ I ++++L +L L N + P + SL L L ++N S L + +
Sbjct: 300 ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINW 355
Query: 166 LDLRANRFGGDIMHLLSQLGSVVHVDLSNN 195
L N+ L+ L + + L++
Sbjct: 356 LSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 54.6 bits (130), Expect = 2e-08
Identities = 55/347 (15%), Positives = 102/347 (29%), Gaps = 56/347 (16%)
Query: 217 LNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGS 276
+ + ++ + D D + A + +I ++ +L + +NQL+
Sbjct: 27 TVLGKTNVTDTVSQTD----LDQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNNQLTDI 81
Query: 277 LPVALLQE--------------SSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLS 322
P+ L + + + L + I S
Sbjct: 82 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 141
Query: 323 GSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTS 382
++ + L ++ ++ N L + + ++ L S
Sbjct: 142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES 201
Query: 383 FKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPL 442
+NN + P + L + L+ N L + + + T LTDL+L+ N S
Sbjct: 202 LIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA 257
Query: 443 PLQEIQNNPSTGSTQNLSLTSLDLAYNSLSG--------------------RLLPGISKF 482
PL + LT L L N +S + IS
Sbjct: 258 PLSGLTK-----------LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 306
Query: 483 HNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFP 529
NL YL L N P L+ + N +S +L N
Sbjct: 307 KNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD--VSSLANLT 351
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 45.8 bits (107), Expect = 1e-05
Identities = 52/305 (17%), Positives = 93/305 (30%), Gaps = 31/305 (10%)
Query: 268 LGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLP- 326
LG ++ ++ L + ++ L ++ G L ++N S+N+L+ P
Sbjct: 29 LGKTNVTDTVSQTDLDQ----VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPL 84
Query: 327 ------------ARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQT 374
+ L+G + +L++ + N
Sbjct: 85 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 144
Query: 375 SQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTS-TKLTDLNL 433
S L+ G+ L L ++ N S T L L
Sbjct: 145 SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIA 204
Query: 434 SGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNN 493
+ N S PL + N L L L N L + ++ NL L+L+NN
Sbjct: 205 TNNQISDITPLGILTN-----------LDELSLNGNQLKD--IGTLASLTNLTDLDLANN 251
Query: 494 KFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFPDSAFHPGNSLLTFPNSPSQQDVPD 553
+ P L E + N +S + P + N L + +++
Sbjct: 252 QISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 311
Query: 554 LTLRG 558
LTL
Sbjct: 312 LTLYF 316
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 68.1 bits (165), Expect = 6e-13
Identities = 52/261 (19%), Positives = 92/261 (35%), Gaps = 15/261 (5%)
Query: 113 QSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANR 172
LDL +N + +LKNL L + +N P F L KL+ L L N+
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 173 FGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHD 232
+ + + + N+ + + + ++ S E
Sbjct: 91 LKELPEKMPKT---LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147
Query: 233 GMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSEL 292
GM L ++ ++ IP SL L L N+++ +L + L++L
Sbjct: 148 GMK---KLSYIRIADTNI-TTIPQGLPP-SLTELHLDGNKITKVDAASL--KGLNNLAKL 200
Query: 293 DLSLNQLEGPVGSITSAT--LKKVNLSSNKLSGSLPARVGHC--TIVDLSNNRLSG-DLS 347
LS N + + T L++++L++NKL H +V L NN +S +
Sbjct: 201 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSN 260
Query: 348 RMQNWGNYVEDIHLSSNFLTG 368
G + S L
Sbjct: 261 DFCPPGYNTKKASYSGVSLFS 281
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 67.8 bits (164), Expect = 9e-13
Identities = 45/313 (14%), Positives = 98/313 (31%), Gaps = 40/313 (12%)
Query: 129 IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVV 188
+P + + LL++ +N F L L L L N+ + L +
Sbjct: 25 VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82
Query: 189 HVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNN 248
+ LS NQ +L + ++ + +F + +E+
Sbjct: 83 RLYLSKNQLK---ELPEKMPKTLQELRVHENEITKVRKSVFNG--LNQMIVVELGTNPLK 137
Query: 249 HLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITS 308
+F + L +R+ ++ ++P L L+EL L N++
Sbjct: 138 SSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPS----LTELHLDGNKITKV------ 186
Query: 309 ATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTG 368
+ + + + LS N +S + ++ ++HL++N L
Sbjct: 187 -------------DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV- 232
Query: 369 MVPNQTSQFLRLTSFKVSNNSLEG------DLPAVLGTYPELKVIDLSLNHLNGFLLP-- 420
VP + + + NN++ P + L N + + +
Sbjct: 233 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 292
Query: 421 SFFTSTKLTDLNL 433
+F + L
Sbjct: 293 TFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 62.7 bits (151), Expect = 3e-11
Identities = 43/274 (15%), Positives = 85/274 (31%), Gaps = 14/274 (5%)
Query: 208 SSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRIL 266
L++ N + NL NN + P +F + L L
Sbjct: 27 KDLPPDTALLDLQNNKITE--IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 84
Query: 267 RLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLP 326
L NQL LP + + + + + + + ++ + K SG
Sbjct: 85 YLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 143
Query: 327 ARVGHCT---IVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSF 383
+ +++ ++ + Q + ++HL N +T + L
Sbjct: 144 GAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL 200
Query: 384 KVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLP 443
+S NS+ L P L+ + L+ N L + + L NN S
Sbjct: 201 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNISA--- 256
Query: 444 LQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLP 477
+ P +T+ S + + L N + +
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 290
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 59.3 bits (142), Expect = 5e-10
Identities = 44/282 (15%), Positives = 94/282 (33%), Gaps = 31/282 (10%)
Query: 239 NLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQ 298
+L V S+ L +P + +L L +N+++ + L L L N+
Sbjct: 11 HLRVVQCSDLGLE-KVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKN--LHTLILINNK 66
Query: 299 LEG-PVGSITSAT-LKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYV 356
+ G+ L+++ LS N+L + + N ++ + N N +
Sbjct: 67 ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 126
Query: 357 EDIHLSSNFL--TGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHL 414
+ L +N L +G+ +L+ ++++ ++ + P L + L N +
Sbjct: 127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKI 183
Query: 415 NGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQN--------------NPSTGSTQNLS 460
S L L LS N+ S G +
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 243
Query: 461 LTSLDLAYNSLSG------RLLPGISKFHNLVYLNLSNNKFE 496
+ + L N++S +K + ++L +N +
Sbjct: 244 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.0 bits (136), Expect = 3e-09
Identities = 32/197 (16%), Positives = 60/197 (30%), Gaps = 14/197 (7%)
Query: 333 TIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEG 392
+V S+ L ++ + L +N +T + L + + NN +
Sbjct: 13 RVVQCSDLGLE---KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69
Query: 393 DLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPS 452
P +L+ + LS N L T +L
Sbjct: 70 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV----------RKSV 119
Query: 453 TGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNV 512
+ + L SG L Y+ +++ +IP GLP L E ++
Sbjct: 120 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHL 178
Query: 513 SFNNLSGVVPENLRNFP 529
N ++ V +L+
Sbjct: 179 DGNKITKVDAASLKGLN 195
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.5 bits (127), Expect = 4e-08
Identities = 38/256 (14%), Positives = 83/256 (32%), Gaps = 19/256 (7%)
Query: 98 SNNQLMGNI-TDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSG 156
NN++ D ++++L L L +N + P L L L +S N +
Sbjct: 39 QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 98
Query: 157 FGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQY 216
L +L+ + N + + L ++ V+L N S + G + + Y
Sbjct: 99 PKTLQELRVHE---NEITKVRKSVFNGLNQMIVVELGTNPLK-SSGIENGAFQGMKKLSY 154
Query: 217 LNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGS 276
+ I++ ++ P +L N + + + S +
Sbjct: 155 IRIADTNI--TTIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209
Query: 277 LPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSG---------SLPA 327
+ L + + + ++ P G ++ V L +N +S
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 269
Query: 328 RVGHCTIVDLSNNRLS 343
+ + V L +N +
Sbjct: 270 KKASYSGVSLFSNPVQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 46.2 bits (108), Expect = 1e-05
Identities = 49/264 (18%), Positives = 90/264 (34%), Gaps = 32/264 (12%)
Query: 311 LKKVNLSSNKLSGSLPARVG-HCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGM 369
L+ V S L +P + ++DL NN+++ + + L +N ++ +
Sbjct: 12 LRVVQCSDLGLE-KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70
Query: 370 VPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLT 429
P + ++L +S N L+ + T EL+V + + + + + +
Sbjct: 71 SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVF-NGLNQMIVV 129
Query: 430 DLNLSGNNFSGPLP----------LQEIQNNPSTGSTQNL--SLTSLDLAYNSLSGRLLP 477
+L + SG I + T Q L SLT L L N ++
Sbjct: 130 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA 189
Query: 478 GISKFHNLVYLNLSNNKFEGSIPDGLPNG--LKEFNVSFNNLSGVVPE------------ 523
+ +NL L LS N L N L+E +++ N L V
Sbjct: 190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 249
Query: 524 ---NLRNFPDSAFHPGNSLLTFPN 544
N+ + F P +
Sbjct: 250 HNNNISAIGSNDFCPPGYNTKKAS 273
|
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.4 bits (164), Expect = 8e-13
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYY 797
E +G G ++ + + +AVK L++G + F E + ++H LV L
Sbjct: 19 ERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRLYAVV 77
Query: 798 WGPKEHEKLVISNYINAQSLAVYLQGKG 825
+ +I+ Y+ SL +L+
Sbjct: 78 ---TQEPIYIITEYMENGSLVDFLKTPS 102
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.5 bits (163), Expect = 8e-13
Identities = 37/193 (19%), Positives = 63/193 (32%), Gaps = 10/193 (5%)
Query: 109 IGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDL 168
+ L L L L P L L L + N+ + F LG L +L L
Sbjct: 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160
Query: 169 RANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGEL 228
NR L S+ + L N+ + +F + + + +
Sbjct: 161 HGNRISSVPERAFRGLHSLDRLLLHQNRV-----AHVHPHAFRDLGRLMTLYLFANNLSA 215
Query: 229 FPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMM 288
P + + L+ ++N V + L+ R S+++ SLP L
Sbjct: 216 LPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAG----- 270
Query: 289 LSELDLSLNQLEG 301
L+ N L+G
Sbjct: 271 RDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.1 bits (149), Expect = 5e-11
Identities = 48/276 (17%), Positives = 85/276 (30%), Gaps = 34/276 (12%)
Query: 95 VSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTF- 153
S L I + + + + L N + + + +NL +L + SN
Sbjct: 16 TSCPQQGLQAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73
Query: 154 ------------------------PSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVH 189
P+ F GLG+L L L L L ++ +
Sbjct: 74 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133
Query: 190 VDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNH 249
+ L +N D + ++ +L + N + P +L+ N
Sbjct: 134 LYLQDNALQALPD---DTFRDLGNLTHLFLHGNRISS--VPERAFRGLHSLDRLLLHQNR 188
Query: 250 LVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSIT-S 308
+ P + +LP L L L+ N +
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEA-LAPLRALQYLRLNDNPWVCDCRARPLW 247
Query: 309 ATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSG 344
A L+K SS+++ SLP R+ + L+ N L G
Sbjct: 248 AWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (146), Expect = 1e-10
Identities = 36/246 (14%), Positives = 71/246 (28%), Gaps = 16/246 (6%)
Query: 289 LSELDLSLNQLEG-PVGSITSATLKKVNL-----SSNKLSGSLPARVGHCTIVDLSNNRL 342
+ L N++ P S + + + + + + N +L
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 343 SGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYP 402
+ + +HL L + P L + +N+L+
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153
Query: 403 ELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLT 462
L + L N ++ +F L L L N + P
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF---- 209
Query: 463 SLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIP-DGLPNGLKEFNVSFNNLSGVV 521
N+LS ++ L YL L++N + L L++F S + + +
Sbjct: 210 -----ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSL 264
Query: 522 PENLRN 527
P+ L
Sbjct: 265 PQRLAG 270
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.8 bits (143), Expect = 3e-10
Identities = 31/163 (19%), Positives = 55/163 (33%), Gaps = 10/163 (6%)
Query: 91 MLCNVSVSNNQLMGNITD-IGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSF 149
L + + +N L D + +L L L N + L +L L + N
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189
Query: 150 EGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSS 209
P F LG+L L L AN L+ L ++ ++ L++N +
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA----RP 245
Query: 210 FISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVG 252
+ +Q S + + L ++ + N L G
Sbjct: 246 LWAWLQKFRGSSSEVPCSLPQR-----LAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (100), Expect = 8e-05
Identities = 41/235 (17%), Positives = 64/235 (27%), Gaps = 17/235 (7%)
Query: 333 TIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEG 392
L + + I L N ++ + LT + +N L
Sbjct: 14 VTTSCPQQGLQ---AVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR 70
Query: 393 DLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTS-TKLTDLNLSGNNFSGPLPLQEIQNNP 451
A L+ +DLS N + P+ F +L L+L Q
Sbjct: 71 IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL---------QELG 121
Query: 452 STGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPN--GLKE 509
+L L L N+L NL +L L N+ L
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181
Query: 510 FNVSFNNLSGVVPENLRNFPDSAF--HPGNSLLTFPNSPSQQDVPDLTLRGHGNH 562
+ N ++ V P R+ N+L P LR + N
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.7 bits (157), Expect = 5e-12
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYY 797
+ +G G + +A+K ++EG + + EF E K + N+ H LV L G
Sbjct: 10 KELGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQLYGVC 68
Query: 798 WGPKEHEKLVISNYINAQSLAVYLQGK 824
K+ +I+ Y+ L YL+
Sbjct: 69 T--KQRPIFIITEYMANGCLLNYLREM 93
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.7 bits (157), Expect = 5e-12
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYY 797
+ IG G ++ + +A+K +REG A +++F E + + + HP LV L G
Sbjct: 11 QEIGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLVQLYGVC 69
Query: 798 WGPKEHEKLVISNYINAQSLAVY 820
++ ++ ++ L+ Y
Sbjct: 70 L--EQAPICLVFEFMEHGCLSDY 90
|
| >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Carboxyl-terminal src kinase (csk) species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.5 bits (154), Expect = 1e-11
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYY 797
+ IG+ G + G+ +AVK ++ + F E + ++H NLV L G
Sbjct: 13 QTIGKGEFGDVMLGDYR-GNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVI 69
Query: 798 WGPKEHEKLVISNYINAQSLAVYLQGKG 825
K +V Y+ SL YL+ +G
Sbjct: 70 VEEKGGLYIVT-EYMAKGSLVDYLRSRG 96
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.5 bits (146), Expect = 2e-10
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYY 797
+G+ C G ++ T + + +A+K L+ G + F +E + + ++H LV L
Sbjct: 23 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLVQLYAVV 81
Query: 798 WGPK 801
Sbjct: 82 SEEP 85
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.1 bits (145), Expect = 3e-10
Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKG-KKEFAREVKKLGNIKHPNLVSLQG 795
+G G ++K + SG ++A K + I + + RE++ L P +V G
Sbjct: 12 SELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYG 71
Query: 796 YYWGPKEHEKLVISNYINAQSLAVYLQGKGLVLW 829
++ + E + +++ SL L+ G +
Sbjct: 72 AFY--SDGEISICMEHMDGGSLDQVLKKAGRIPE 103
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.6 bits (144), Expect = 3e-10
Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 3/88 (3%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYY 797
+ IG GT+YK + + + + + F EV L +H N++ GY
Sbjct: 14 QRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 73
Query: 798 WGPKEHEKLVISNYINAQSLAVYLQGKG 825
P+ +++ + SL +L
Sbjct: 74 TAPQ---LAIVTQWCEGSSLYHHLHIIE 98
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Score = 60.5 bits (146), Expect = 3e-10
Identities = 17/89 (19%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGY 796
E +G G +++ T +G+ A K + K+ +E++ + ++HP LV+L +
Sbjct: 32 EELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNL--H 89
Query: 797 YWGPKEHEKLVISNYINAQSLAVYLQGKG 825
++E ++I +++ L + +
Sbjct: 90 DAFEDDNEMVMIYEFMSGGELFEKVADEH 118
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Score = 60.1 bits (145), Expect = 4e-10
Identities = 14/92 (15%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGY 796
E +G G +++ +G + K + K E+ + + HP L++L +
Sbjct: 35 EELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINL--H 92
Query: 797 YWGPKEHEKLVISNYINAQSLAVYLQGKGLVL 828
++E ++I +++ L + + +
Sbjct: 93 DAFEDKYEMVLILEFLSGGELFDRIAAEDYKM 124
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.9 bits (142), Expect = 7e-10
Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGK---KEFAREVKKLGNIKHPNLVSL 793
IG G +Y A + + ++A+K++ + ++ +EV+ L ++HPN +
Sbjct: 21 REIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQY 80
Query: 794 QGYYWGPKEHEKLVISNYINAQSLAVYLQGKGLVLW 829
+G Y +EH ++ Y + + K +
Sbjct: 81 RGCYL--REHTAWLVMEYCLGSASDLLEVHKKPLQE 114
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.2 bits (140), Expect = 1e-09
Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 740 IGRSCHGTLYKATL---DSGSILAVKRLREGIAKG-KKEFAREVKKLGNIKHPNLVSLQG 795
+G G++ + +A+K L++G K +E RE + + + +P +V L G
Sbjct: 17 LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIG 76
Query: 796 YYWGPKEHEKLVISNYINAQSLAVYLQGKG 825
+ +++ L +L GK
Sbjct: 77 VC---QAEALMLVMEMAGGGPLHKFLVGKR 103
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 57.8 bits (139), Expect = 1e-09
Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGK---KEFAREVKKLGNIKHPNLVSL 793
E++G ++ A L +AVK LR +A+ F RE + + HP +V++
Sbjct: 13 EILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAV 72
Query: 794 QGYYWGPKEHEKLV--ISNYINAQSLAVYLQGKGLVLW 829
L + Y++ +L + +G +
Sbjct: 73 YDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTP 110
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (139), Expect = 2e-09
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYY 797
E IG+ G +++ G +AVK + E+ + ++H N++
Sbjct: 9 ESIGKGRFGEVWRGKWR-GEEVAVKIFSSREER-SWFREAEIYQTVMLRHENILGFIAAD 66
Query: 798 W--GPKEHEKLVISNYINAQSLAVYLQGKGL 826
+ ++S+Y SL YL +
Sbjct: 67 NKDNGTWTQLWLVSDYHEHGSLFDYLNRYTV 97
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.4 bits (138), Expect = 2e-09
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 738 EVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGY 796
+G +G +Y+ +AVK L+E +EF +E + IKHPNLV L
Sbjct: 23 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQL--L 79
Query: 797 YWGPKEHEKLVISNYINAQSLAVYLQGKG 825
+E +I+ ++ +L YL+
Sbjct: 80 GVCTREPPFYIITEFMTYGNLLDYLRECN 108
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.3 bits (138), Expect = 2e-09
Identities = 22/91 (24%), Positives = 29/91 (31%), Gaps = 3/91 (3%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQ 794
IG +G K G IL K L G K+ EV L +KHPN+V
Sbjct: 10 YTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYY 69
Query: 795 GYYWGPKEHEKLVISNYINAQSLAVYLQGKG 825
++ Y LA +
Sbjct: 70 DRIIDRTNTTLYIVMEYCEGGDLASVITKGT 100
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (139), Expect = 2e-09
Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 730 EELSHAPAEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHP 788
+E+S+ +VIG G +Y+A L DSG ++A+K++ + K+ RE++ + + H
Sbjct: 18 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVL----QDKRFKNRELQIMRKLDHC 73
Query: 789 NLVSLQGYYWGPKEHEKLV 807
N+V L+ +++ E + V
Sbjct: 74 NIVRLRYFFYSSGEKKDEV 92
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.3 bits (138), Expect = 2e-09
Identities = 16/92 (17%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGY 796
+G G +YKA ++ + A K + + +++ E+ L + HPN+V L
Sbjct: 18 GELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDA 77
Query: 797 YWGPKEHEKLVISNYINAQSLAVYLQGKGLVL 828
++ E+ ++ + ++ + L
Sbjct: 78 FY--YENNLWILIEFCAGGAVDAVMLELERPL 107
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 57.7 bits (139), Expect = 2e-09
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKE-FAREVKKLGNIKHPNLVSLQG 795
+V+G + A + ++A+K + + +GK+ E+ L IKHPN+V+L
Sbjct: 15 DVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDD 74
Query: 796 YYWGPKEHEKLVISNYINAQSLAVYLQGKGLVLW 829
Y +I ++ L + KG
Sbjct: 75 IYESGGHL--YLIMQLVSGGELFDRIVEKGFYTE 106
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.9 bits (137), Expect = 2e-09
Identities = 20/97 (20%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 738 EVIGRSCHGTLYKATL-DSGSILAVKRL--REGIAKGKKEFAREVKKLGNIKHPNLVSLQ 794
IGR T+YK ++ +A L R+ ++ F E + L ++HPN+V
Sbjct: 15 IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFY 74
Query: 795 GYYWGPKEHEKLV--ISNYINAQSLAVYLQGKGLVLW 829
+ + +K + ++ + + +L YL+ ++
Sbjct: 75 DSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKI 111
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.1 bits (137), Expect = 2e-09
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 21/113 (18%)
Query: 727 FTAEELSHAPA--------------EVIGRSCHGTLYKATL----DSGSILAVKRLREG- 767
FT E+ + A +VIG G + L +A+K L+ G
Sbjct: 7 FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY 66
Query: 768 IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQSLAVY 820
K +++F E +G HPN++ L K ++I+ ++ SL +
Sbjct: 67 TEKQRRDFLSEASIMGQFDHPNVIHL--EGVVTKSTPVMIITEFMENGSLDSF 117
|
| >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Hepatocyte growth factor receptor, c-MET species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.1 bits (137), Expect = 3e-09
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 738 EVIGRSCHGTLYKATLDSGS----ILAVKRLREGIAKGK-KEFAREVKKLGNIKHPNLVS 792
EVIGR G +Y TL AVK L G+ +F E + + HPN++S
Sbjct: 33 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 92
Query: 793 LQGYYWGPKEHEKLVISNYINAQSLAVYLQGKG 825
L G E LV+ Y+ L +++ +
Sbjct: 93 LLGICLRS-EGSPLVVLPYMKHGDLRNFIRNET 124
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.7 bits (136), Expect = 3e-09
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 8/96 (8%)
Query: 739 VIGRSCHGTLYKATL---DSGSILAVKRLREGIAKG--KKEFAREVKKLGNIKHPNLVSL 793
+G GT+ K +AVK L+ K E E + + +P +V +
Sbjct: 14 ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRM 73
Query: 794 QGYYWGPKEHEKLVISNYINAQSLAVYLQGKGLVLW 829
G +++ L YLQ V
Sbjct: 74 IGICEAES---WMLVMEMAELGPLNKYLQQNRHVKD 106
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.9 bits (137), Expect = 3e-09
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGY 796
E IG+ GT+Y A + +G +A++++ K+ E+ + K+PN+V+
Sbjct: 26 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDS 85
Query: 797 YWGPKEHEKLVISNYINAQSLAVYLQGKG 825
Y E V+ Y+ SL +
Sbjct: 86 YLVGDEL--WVVMEYLAGGSLTDVVTETC 112
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Score = 56.4 bits (135), Expect = 4e-09
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLR--EGIAKGKKEFAREVKKLGNIKHPNLVSLQG 795
E IG +G +YKA + G A+K++R + RE+ L +KH N+V L
Sbjct: 8 EKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYD 67
Query: 796 YYWGPKEHEKLVISNYINAQSLAVYLQGKGLVLW 829
+ +++ +++ + +G +
Sbjct: 68 VIH--TKKRLVLVFEHLDQDLKKLLDVCEGGLES 99
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.4 bits (135), Expect = 4e-09
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 738 EVIGRSCHGTLYKATL------DSGSILAVKRLR-EGIAKGKKEFAREVKKLGNIK-HPN 789
+ +G G + +AT D+ +AVK L+ ++ E+K L + H N
Sbjct: 29 KTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMN 88
Query: 790 LVSLQGYYWGPKEHEKLVISNYINAQSLAVYLQGKG 825
+V+L G LVI+ Y L +L+ K
Sbjct: 89 IVNLLGACT--IGGPTLVITEYCCYGDLLNFLRRKR 122
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.8 bits (134), Expect = 5e-09
Identities = 13/96 (13%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLR-EGIAKGKKEFAREVKKLGNIKHPNLVSLQG 795
+ +G +G + A + +AVK + + + +E+ + H N+V G
Sbjct: 11 QTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYG 70
Query: 796 YYWGPKEHEKLVISNYINAQSLAVYLQGKGLVLWFY 831
+ + + + + Y + L ++ +
Sbjct: 71 HRR--EGNIQYLFLEYCSGGELFDRIEPDIGMPEPD 104
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.5 bits (133), Expect = 6e-09
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 738 EVIGRSCHGTLYKATLDS----GSILAVKRLREGIA---KGKKEFAREVKKLGNIKHPNL 790
E +G G + + D+ +AVK L+ + + +F REV + ++ H NL
Sbjct: 14 EKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNL 73
Query: 791 VSLQGYYWGPKEH 803
+ L G P
Sbjct: 74 IRLYGVVLTPPMK 86
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (134), Expect = 7e-09
Identities = 16/93 (17%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKG-KKEFAREVKKLGNIKHPNLVSLQG 795
IG +G + A + +A+K++ + + RE+K L +H N++ +
Sbjct: 14 SYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGIND 73
Query: 796 YYWGP--KEHEKLVISNYINAQSLAVYLQGKGL 826
P ++ + + + ++ L L+ + L
Sbjct: 74 IIRAPTIEQMKDVYLVTHLMGADLYKLLKTQHL 106
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.2 bits (132), Expect = 1e-08
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 9/95 (9%)
Query: 738 EVIGRSCHGTLYKATL------DSGSILAVKRLR-EGIAKGKKEFAREVKKLGNIKHPNL 790
IG G +++A + +++AVK L+ E A + +F RE + +PN+
Sbjct: 19 RDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNI 78
Query: 791 VSLQGYYWGPKEHEKLVISNYINAQSLAVYLQGKG 825
V + ++ Y+ L +L+
Sbjct: 79 V--KLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMS 111
|
| >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Focal adhesion kinase 1 (fak) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.4 bits (130), Expect = 2e-08
Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 738 EVIGRSCHGTLYKATL----DSGSILAVKRLREGIAKGKKE-FAREVKKLGNIKHPNLVS 792
IG G +++ + +A+K + + +E F +E + HP++V
Sbjct: 13 RCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVK 72
Query: 793 LQGYYWGPKEHEKLVISNYINAQSLAVY 820
L G E+ +I L +
Sbjct: 73 LIGVIT---ENPVWIIMELCTLGELRSF 97
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.1 bits (129), Expect = 2e-08
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 738 EVIGRSCHGTLYKATLDSGS-----ILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLV 791
+VIG G +YK L + S +A+K L+ G K + +F E +G H N++
Sbjct: 13 KVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNII 72
Query: 792 SLQGYYWGPKEH 803
L+G K
Sbjct: 73 RLEGVISKYKPM 84
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.3 bits (130), Expect = 2e-08
Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGY 796
E +GR G +++ S K ++ + +E+ L +H N++ L
Sbjct: 11 EDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-GTDQVLVKKEISILNIARHRNILHLHES 69
Query: 797 YWGPKEHEKLVISNYINAQSLAVYLQGKGLVL 828
+ E ++I +I+ + + L
Sbjct: 70 FE--SMEELVMIFEFISGLDIFERINTSAFEL 99
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (128), Expect = 3e-08
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 738 EVIGRSCHGTLYKATLDSGSIL---AVKRLREGIAK-GKKEFAREVKKLGNI-KHPNLVS 792
+VIG G + KA + + A+KR++E +K ++FA E++ L + HPN+++
Sbjct: 16 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 75
Query: 793 LQGYYWGPKEHEKLVISNYINAQSLAVYLQGK 824
L G + Y +L +L+
Sbjct: 76 LLGACE--HRGYLYLAIEYAPHGNLLDFLRKS 105
|
| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Insulin-like growth factor 1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (126), Expect = 6e-08
Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 9/95 (9%)
Query: 738 EVIGRSCHGTLYKATL------DSGSILAVKRLREGIA-KGKKEFAREVKKLGNIKHPNL 790
+G+ G +Y+ + + +A+K + E + + + EF E + ++
Sbjct: 26 RELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHV 85
Query: 791 VSLQGYYWGPKEHEKLVISNYINAQSLAVYLQGKG 825
V + + LVI + L YL+
Sbjct: 86 V--RLLGVVSQGQPTLVIMELMTRGDLKSYLRSLR 118
|
| >d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38-gamma species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (124), Expect = 1e-07
Identities = 14/70 (20%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGK--KEFAREVKKLGNIKHPNLVSLQ 794
+ +G +G + A +G+ +A+K+L K RE++ L +++H N++ L
Sbjct: 24 QPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLL 83
Query: 795 GYYWGPKEHE 804
+ + +
Sbjct: 84 DVFTPDETLD 93
|
| >d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.2 bits (124), Expect = 1e-07
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGK--KEFAREVKKLGNIKHPNLVSLQ 794
+G +G++ A +G +AVK+L K RE++ L ++KH N++ L
Sbjct: 24 SPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLL 83
Query: 795 GYYWGPKEH 803
+ +
Sbjct: 84 DVFTPARSL 92
|
| >d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase CK2, alpha subunit species: Rattus norvegicus [TaxId: 10116]
Score = 51.8 bits (123), Expect = 2e-07
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKEFAREVKKLGNIK-HPNLVSLQG 795
+GR + +++A + + + VK L+ KK+ RE+K L N++ PN+++L
Sbjct: 41 RKLGRGKYSEVFEAINITNNEKVVVKILKP---VKKKKIKREIKILENLRGGPNIITLAD 97
Query: 796 YYWGPKEHEKLVISNYINAQSLAVYLQ 822
P ++ ++N Q
Sbjct: 98 IVKDPVSRTPALVFEHVNNTDFKQLYQ 124
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.4 bits (122), Expect = 2e-07
Identities = 18/98 (18%), Positives = 42/98 (42%), Gaps = 8/98 (8%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKE-----FAREVKKLGNIKHPNLV 791
+ +G T+YKA ++ I+A+K+++ G K+ RE+K L + HPN++
Sbjct: 4 DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII 63
Query: 792 SLQGYYWGPKEHEKLVISNYINAQSLAVYLQGKGLVLW 829
L + ++ +++ + ++
Sbjct: 64 GL--LDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTP 99
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.6 bits (123), Expect = 2e-07
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIA---KGKKEFAREVKKLGNIKHPNLVSL 793
+G G ++ +G A+K L++ I K + E L + HP ++ +
Sbjct: 10 RTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRM 69
Query: 794 QGYYWGPKEH 803
G + ++
Sbjct: 70 WGTFQDAQQI 79
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.3 bits (122), Expect = 2e-07
Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKEFAREVKKLGNI-KHPNLVSLQG 795
+V+G +G + + + A+K L++ + REV+ + P++V +
Sbjct: 18 QVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVD 72
Query: 796 YYWGPKEHEK--LVISNYINAQSLAVYLQGKG 825
Y K L++ ++ L +Q +G
Sbjct: 73 VYENLYAGRKCLLIVMECLDGGELFSRIQDRG 104
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (120), Expect = 3e-07
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 738 EVIGRSCHGTLYKAT------LDSGSILAVKRLREGIAKG-KKEFAREVKKLGNIKHPNL 790
+ +GR G + +A + +AVK L+EG + E+K L +I H
Sbjct: 19 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLN 78
Query: 791 VSLQGYYWGPKEHEKLVISNYINAQSLAVYLQGKG 825
V +VI + +L+ YL+ K
Sbjct: 79 VVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKR 113
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.5 bits (119), Expect = 3e-07
Identities = 46/201 (22%), Positives = 77/201 (38%), Gaps = 8/201 (3%)
Query: 240 LEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQL 299
LEV + +L A+P + IL L N L L+ + L++L+L +L
Sbjct: 13 LEV-NCDKRNLT-ALPP-DLPKDTTILHLSENLLYTFSLATLMPYTR--LTQLNLDRAEL 67
Query: 300 EGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVD--LSNNRLSGDLSRMQNWGNYVE 357
T L ++LS N+L + +S NRL+ ++
Sbjct: 68 TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 358 DIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGF 417
+++L N L + P + +L ++NN+L +L L + L N L
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186
Query: 418 LLPSFFTSTKLTDLNLSGNNF 438
+ FF S L L GN +
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (108), Expect = 6e-06
Identities = 32/209 (15%), Positives = 53/209 (25%), Gaps = 14/209 (6%)
Query: 92 LCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEG 151
V+ L D+ L LS NL + + ++ L LN+
Sbjct: 12 HLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK 69
Query: 152 TFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFI 211
L + L L+ S + L +
Sbjct: 70 LQVD--------GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 212 SSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGS 270
+ + + P + LE +NN+L N + +L L L
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181
Query: 271 NQLSGSLPVALLQESSMMLSELDLSLNQL 299
N L ++P L L N
Sbjct: 182 NSLY-TIPKGFFGSHL--LPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 3e-04
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 479 ISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFP 529
+SK + + +N ++P LP ++S N L L +
Sbjct: 6 VSKVASHLEVNCDKRNLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYT 55
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (93), Expect = 6e-04
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Query: 122 HNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLL 181
N L P + L L++++N+ GL L L L+ N I
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191
Query: 182 SQLGSVVHVDLSNNQFSGSLDL 203
+ L N + + ++
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEI 213
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.1 bits (92), Expect = 7e-04
Identities = 42/209 (20%), Positives = 61/209 (29%), Gaps = 31/209 (14%)
Query: 308 SATLKKVNLSSNKLSGSLPARVG-HCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFL 366
A+ +VN L+ +LP + TI+ LS N L + ++L L
Sbjct: 9 VASHLEVNCDKRNLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67
Query: 367 TGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHL------------ 414
T + + T L + L L L V L L
Sbjct: 68 TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 415 --------NGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDL 466
L P T T + NN LP + + L +L L
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN--------LDTLLL 179
Query: 467 AYNSLSGRLLPGISKFHNLVYLNLSNNKF 495
NSL + G H L + L N +
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.9 bits (121), Expect = 3e-07
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKG------KKEFAREVKKLGNIKHPNL 790
E +G + K +G A K +++ K +++ REV L I+HPN+
Sbjct: 16 EELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNV 75
Query: 791 VSLQGYYWGPKE 802
++L Y +
Sbjct: 76 ITLHEVYENKTD 87
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (120), Expect = 4e-07
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 6/92 (6%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIA---KGKKEFAREVKKLGNIKHPNLVSL 793
+++G T+ A L + A+K L + RE + + HP V L
Sbjct: 14 KILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKL 73
Query: 794 QGYYWGPKEHEKLVISNYINAQSLAVYLQGKG 825
Y+ + + +Y L Y++ G
Sbjct: 74 --YFTFQDDEKLYFGLSYAKNGELLKYIRKIG 103
|
| >d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (118), Expect = 5e-07
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAK--GKKEFAREVKKLGNIKHPNLVSLQ 794
E IG +GT++KA ++ I+A+KR+R RE+ L +KH N+V L
Sbjct: 8 EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLH 67
Query: 795 GYYWGPKEH 803
K+
Sbjct: 68 DVLHSDKKL 76
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.9 bits (118), Expect = 5e-07
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIA--KGKKEFAREVKKLGNIKHPNLVSLQ 794
E IG +G +YKA +G ++A+K++R RE+ L + HPN+V L
Sbjct: 8 EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLL 67
Query: 795 GYYWGPKEH 803
+
Sbjct: 68 DVIHTENKL 76
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (119), Expect = 5e-07
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSIL----AVKRLREGI-AKGKKEFAREVKKLGNIKHPNLV 791
+V+G GT+YK + G + A+K LRE K KE E + ++ +P++
Sbjct: 15 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVC 74
Query: 792 SLQGYYWGPKEHEKLVISNYINAQSLAVYLQGKGLVLW 829
L +L+ L + K +
Sbjct: 75 RL--LGICLTSTVQLITQLMPFGCLLDYVREHKDNIGS 110
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (118), Expect = 6e-07
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Query: 738 EVIGRSCHGTLYKATL------DSGSILAVKRLREGIAKG-KKEFAREVKKLGNI-KHPN 789
+V+G G + AT +AVK L+E ++ E+K + + H N
Sbjct: 43 KVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHEN 102
Query: 790 LVSLQGYYWGPKEHEKLVISNYINAQSLAVYLQGKG 825
+V+L G +I Y L YL+ K
Sbjct: 103 IVNLLGACT--LSGPIYLIFEYCCYGDLLNYLRSKR 136
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (118), Expect = 6e-07
Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 12/98 (12%)
Query: 425 STKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGR----LLPGIS 480
S + L++ S + + + L L+ + +
Sbjct: 1 SLDIQSLDIQCEELSDARWAELLPLLQQ--------CQVVRLDDCGLTEARCKDISSALR 52
Query: 481 KFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLS 518
L LNL +N+ + GL+ + LS
Sbjct: 53 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLS 90
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (104), Expect = 3e-05
Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 10/91 (10%)
Query: 458 NLSLTSLDLAYNSLSGRLLPGI-SKFHNLVYLNLSNNKFEGSIPDGLPNG------LKEF 510
+L + SLD+ LS + + L + + + + L E
Sbjct: 1 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 511 NVSFNNLSGVVPENLRNFPDSAFHPGNSLLT 541
N+ N L + P +
Sbjct: 61 NLRSNELGD---VGVHCVLQGLQTPSCKIQK 88
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (102), Expect = 5e-05
Identities = 11/90 (12%), Positives = 29/90 (32%), Gaps = 7/90 (7%)
Query: 138 NLMLLNISSNSF-EGTFPSGFGGLGKLKYLDLRANRFGGD----IMHLLSQLGSVVHVDL 192
++ L+I + + L + + + L I L ++ ++L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 193 SNNQFSGSLDLGLGDS--SFISSIQYLNIS 220
+N+ + + IQ L++
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (102), Expect = 5e-05
Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 9/94 (9%)
Query: 378 LRLTSFKVSNNSL-EGDLPAVLGTYPELKVIDLSLNHLNG----FLLPSFFTSTKLTDLN 432
L + S + L + +L + +V+ L L + + + L +LN
Sbjct: 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
Query: 433 LSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDL 466
L N + T + + L L
Sbjct: 62 LRSNELGD----VGVHCVLQGLQTPSCKIQKLSL 91
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (100), Expect = 9e-05
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 11/78 (14%)
Query: 460 SLTSLDLAYNSLSGR----LLPGISKFHNLVYLNLSNNKFEGSIPDGLPNG-------LK 508
L L LA +S L + H+L L+LSNN + L L+
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429
Query: 509 EFNVSFNNLSGVVPENLR 526
+ + S + + L+
Sbjct: 430 QLVLYDIYWSEEMEDRLQ 447
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (98), Expect = 1e-04
Identities = 12/91 (13%), Positives = 27/91 (29%), Gaps = 5/91 (5%)
Query: 114 SLEFLDLSHNLFHGLIPSGIVS-LKNLMLLNISSNSFEG----TFPSGFGGLGKLKYLDL 168
++ LD+ + ++ L+ ++ + S L L+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 169 RANRFGGDIMHLLSQLGSVVHVDLSNNQFSG 199
R+N G +H + Q +
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (98), Expect = 2e-04
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 9/83 (10%)
Query: 111 SIQSLEFLDLSHNLFHGL----IPSGIVSLKNLMLLNISSNSFEGTFPSGFGG-----LG 161
L L L+ + + +++ +L L++S+N
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426
Query: 162 KLKYLDLRANRFGGDIMHLLSQL 184
L+ L L + ++ L L
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (96), Expect = 2e-04
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 422 FFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISK 481
+ L L L+ + S ++ + N SL LDL+ N L + + +
Sbjct: 365 GQPGSVLRVLWLADCDVSD-----SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419
Query: 482 F-----HNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLS 518
L L L + + + D L L++ S +S
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRL-QALEKDKPSLRVIS 460
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (95), Expect = 4e-04
Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 9/112 (8%)
Query: 349 MQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVID 408
+Q N +ED + P + L L VS++S L A L L+ +D
Sbjct: 345 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCS-SLAATLLANHSLRELD 403
Query: 409 LSLNHLNGFLLPSFFTS-----TKLTDLNLSGNNFSGPLP--LQEI-QNNPS 452
LS N L + S L L L +S + LQ + ++ PS
Sbjct: 404 LSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPS 455
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (94), Expect = 4e-04
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 163 LKYLDLRANRFG-GDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDS-SFISSIQYLNIS 220
++ LD++ LL L V L + + + + + ++ LN+
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 221 ENSLVGE 227
N L
Sbjct: 64 SNELGDV 70
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (93), Expect = 6e-04
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Query: 239 NLEVFDASNNHL--VGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQ--ESSMMLSELDL 294
+++ D L + +++RL L+ + + + L+EL+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 295 SLNQLEGPVGSITSATLKKVNLSSNKLS 322
N+L L+ + KLS
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLS 90
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 7e-04
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 12/85 (14%)
Query: 395 PAVLGTYPELKVIDLSLNHLNG----FLLPSFFTSTKLTDLNLSGNNFS--GPLPLQEIQ 448
+ L+V+ L+ ++ L + + L +L+LS N G L L E
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421
Query: 449 NNPSTGSTQNLSLTSLDLAYNSLSG 473
P L L L S
Sbjct: 422 RQPGC------LLEQLVLYDIYWSE 440
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (91), Expect = 0.001
Identities = 13/93 (13%), Positives = 30/93 (32%), Gaps = 10/93 (10%)
Query: 356 VEDIHLSSNFLTGMVPNQTSQFLR-LTSFKVSNNSLEGD----LPAVLGTYPELKVIDLS 410
++ + + L+ + L+ ++ + L + + L P L ++L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 411 LNHLNGFLLPSFF-----TSTKLTDLNLSGNNF 438
N L + S K+ L+L
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (90), Expect = 0.001
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 6/73 (8%)
Query: 162 KLKYLDLRANRFGGD----IMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDS--SFISSIQ 215
L+ L L + L S+ +DLSNN + L L +S ++
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429
Query: 216 YLNISENSLVGEL 228
L + + E+
Sbjct: 430 QLVLYDIYWSEEM 442
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (89), Expect = 0.002
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 9/72 (12%)
Query: 137 KNLMLLNISSNSFEGT----FPSGFGGLGKLKYLDLRANRFGGDIMHLLSQ-----LGSV 187
L +L ++ + + L+ LDL N G + L + +
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 188 VHVDLSNNQFSG 199
+ L + +S
Sbjct: 429 EQLVLYDIYWSE 440
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (86), Expect = 0.004
Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 311 LKKVNLSSNKLSG----SLPARVGHCTIVDLSNNRLSGD----LSRMQNWGNYVEDIHLS 362
++ +++ +LS L + C +V L + L+ +S + +++L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 363 SNFLTGMVPNQTSQFLRLTSFKVSNNSLEG 392
SN L + + Q L+ S K+ SL+
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fibroblast growth factor receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (115), Expect = 1e-06
Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 12/98 (12%)
Query: 738 EVIGRSCHGTLYKATL--------DSGSILAVKRLR-EGIAKGKKEFAREVKKLGNI-KH 787
+ +G G + A + + +AVK L+ + K + E++ + I KH
Sbjct: 19 KPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKH 78
Query: 788 PNLVSLQGYYWGPKEHEKLVISNYINAQSLAVYLQGKG 825
N++ ++ VI Y + +L YLQ +
Sbjct: 79 KNII--NLLGACTQDGPLYVIVEYASKGNLREYLQARR 114
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Score = 48.6 bits (115), Expect = 2e-06
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 9/99 (9%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGK------KEFAREVKKLGNIKHPNL 790
+IGR G +Y D+G + A+K L + K K + + P +
Sbjct: 10 RIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFI 69
Query: 791 VSLQGYYWGPKEHEKLVISNYINAQSLAVYLQGKGLVLW 829
V + Y + I + +N L +L G+
Sbjct: 70 VCM--SYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSE 106
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (114), Expect = 2e-06
Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKE---FAREVKKLG-NIKHPNLVS 792
+++G+ G ++ A + A+K L++ + + E + L +HP L
Sbjct: 8 KMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTH 67
Query: 793 LQGYYWGPKEHEKLVISNYINAQSLAVYLQGKG 825
+ + + + Y+N L ++Q
Sbjct: 68 MFCTFQ--TKENLFFVMEYLNGGDLMYHIQSCH 98
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (114), Expect = 2e-06
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 738 EVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSL 793
+G+ G +Y A S ILA+K L + A + + REV+ +++HPN++ L
Sbjct: 12 RPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRL 71
Query: 794 QGYYWGPKEHEKLVISNYINAQSLAVYLQGKGLVLW 829
GY+ +I Y ++ LQ
Sbjct: 72 YGYFH--DATRVYLILEYAPLGTVYRELQKLSKFDE 105
|
| >d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Pkb kinase (Akt-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (114), Expect = 2e-06
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKE---FAREVKKLGNIKHPNLVSL 793
+++G+ G + +G A+K LR+ + K E E + L N +HP L +L
Sbjct: 11 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTAL 70
Query: 794 QGYYWGPKEH 803
+ +
Sbjct: 71 KYAFQTHDRL 80
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.4 bits (114), Expect = 2e-06
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIA--KGKKEFAREVKKLGNIKHPNLVSLQ 794
+ IG G + A +A+K+L K RE+ + + H N++SL
Sbjct: 23 KPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLL 82
Query: 795 GYYWGPKEHE 804
+ K E
Sbjct: 83 NVFTPQKTLE 92
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.4 bits (111), Expect = 3e-06
Identities = 39/293 (13%), Positives = 84/293 (28%), Gaps = 29/293 (9%)
Query: 244 DASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG-P 302
D + +L + + R + + L S + +DLS + +E
Sbjct: 6 DLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF---SPFRVQHMDLSNSVIEVST 62
Query: 303 VGSITSA--TLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIH 360
+ I S L+ ++L +LS + + + + RL+ + +
Sbjct: 63 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS----NLVRLNLSGCSGFSEFALQTLLS 118
Query: 361 LSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLP 420
S + + V++ S + G N L
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK---------NLQKSDLST 169
Query: 421 SFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAY-NSLSGRLLPGI 479
L L+LS + QE L L L+ + L +
Sbjct: 170 LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN--------YLQHLSLSRCYDIIPETLLEL 221
Query: 480 SKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFPDSA 532
+ L L + +G++ L L ++ ++ + + + N +
Sbjct: 222 GEIPTLKTLQVFGIVPDGTLQL-LKEALPHLQINCSHFTTIARPTIGNKKNQE 273
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.6 bits (109), Expect = 6e-06
Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 12/110 (10%)
Query: 381 TSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLN-GFLLPSFFTSTKLTDLNLSGNNFS 439
+ ++ +L P V G VI L F+ ++ ++LS +
Sbjct: 3 QTLDLTGKNL---HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 59
Query: 440 GPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLN 489
+ L +L L LS ++ ++K NLV LN
Sbjct: 60 VSTLHGILSQCS--------KLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (100), Expect = 8e-05
Identities = 40/266 (15%), Positives = 91/266 (34%), Gaps = 13/266 (4%)
Query: 77 LVGNFSFPTIIG---LKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGI 133
L G P + G + + + + + + S ++ +DLS+++ GI
Sbjct: 7 LTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI 66
Query: 134 VS-LKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLR--ANRFGGDIMHLLSQLGSVVHV 190
+S L L++ + L L+L + + LLS + +
Sbjct: 67 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 126
Query: 191 DLSNNQFSGSLDLGLGDSSFISSIQYLNISE-NSLVGELFPHDGMPYFDNLEVFDASNNH 249
+LS + + + +I LN+S + + + NL D S++
Sbjct: 127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 186
Query: 250 LVGAIPSFNFVFS--LRILRL-GSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSI 306
++ F L+ L L + + L + + L L + +G + +
Sbjct: 187 MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT--LKTLQVFGIVPDGTLQLL 244
Query: 307 TSATLKKVNLSSNKLSGSLPARVGHC 332
A L + ++ + + +G+
Sbjct: 245 KEA-LPHLQINCSHFTTIARPTIGNK 269
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 3e-04
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Query: 333 TIVDLSNNRLSGD-LSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLE 391
+DL+ L D R+ + G V +F+ + S R+ +SN+ +E
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQG--VIAFRCPRSFMDQPLAEHFSP-FRVQHMDLSNSVIE 59
Query: 392 GD-LPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLN 432
L +L +L+ + L L+ ++ + ++ L LN
Sbjct: 60 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 3e-04
Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 14/104 (13%)
Query: 429 TDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYL 488
L+L+G N + + + + + + + L + ++
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQG----------VIAFRCPRSFMDQ-PLAEHFSPFRVQHM 51
Query: 489 NLSNNKFEGSIPDGLPNG---LKEFNVSFNNLSGVVPENLRNFP 529
+LSN+ E S G+ + L+ ++ LS + L
Sbjct: 52 DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 95
|
| >d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.8 bits (110), Expect = 6e-06
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGY 796
IG G +Y T + +G +A+K + + E K ++ + +
Sbjct: 13 RKIGSGSFGDIYLGTDIAAGEEVAIKLEC--VKTKHPQLHIESKIYKMMQGGVGIPTIRW 70
Query: 797 YWGPKEHEKLV 807
++ +V
Sbjct: 71 CGAEGDYNVMV 81
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 46.4 bits (108), Expect = 8e-06
Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 21/108 (19%)
Query: 409 LSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAY 468
LN + + L +LN+S N L E+ P L L ++
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNK------LIELPALPP-------RLERLIASF 313
Query: 469 NSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNN 516
N L+ +P + NL L++ N PD +P ++ ++ N+
Sbjct: 314 NHLAE--VPEL--PQNLKQLHVEYNPLR-EFPD-IPESVE--DLRMNS 353
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 45.2 bits (105), Expect = 2e-05
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 468 YNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGV--VPENL 525
N+ S + +L LN+SNNK +P P L+ SFN+L+ V +P+NL
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR-LERLIASFNHLAEVPELPQNL 326
Query: 526 RNFPDSAFHPGNSLLTFPNSPSQ 548
+ N L FP+ P
Sbjct: 327 KQLHVE----YNPLREFPDIPES 345
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 43.7 bits (101), Expect = 6e-05
Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 15/101 (14%)
Query: 120 LSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMH 179
N I S +L LN+S+N P+ +L+ L N +
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNH----LAE 318
Query: 180 LLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNIS 220
+ ++ + + N D+ S++ L ++
Sbjct: 319 VPELPQNLKQLHVEYNPLREFPDI-------PESVEDLRMN 352
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 43.7 bits (101), Expect = 6e-05
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 289 LSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSG 344
L EL++S N+L L+++ S N L+ +P + + + N L
Sbjct: 286 LEELNVSNNKLIELPALPPR--LERLIASFNHLA-EVPELPQNLKQLHVEYNPLRE 338
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 43.3 bits (100), Expect = 8e-05
Identities = 54/356 (15%), Positives = 107/356 (30%), Gaps = 40/356 (11%)
Query: 137 KNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQ 196
+ L +++ + P L+ L N + L S+ + + NN
Sbjct: 38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNS----LTELPELPQSLKSLLVDNNN 89
Query: 197 FSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPS 256
DL ++YL +S N +L + L++ D NN L
Sbjct: 90 LKALSDL-------PPLLEYLGVSNN----QLEKLPELQNSSFLKIIDVDNNSLKKLPDL 138
Query: 257 FNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNL 316
+ + +L + L + L + + + +
Sbjct: 139 PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP 198
Query: 317 SSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQ 376
L + + L + S + +++ S + N S
Sbjct: 199 ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG 258
Query: 377 FLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGN 436
L N+ ++ ++ P L+ +++S N L LP+ L L S N
Sbjct: 259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE--LPALPPR--LERLIASFN 314
Query: 437 NFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSN 492
+ L E+ P +L L + YN L P I ++ L +++
Sbjct: 315 H------LAEVPELPQ-------NLKQLHVEYNPLRE--FPDI--PESVEDLRMNS 353
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (108), Expect = 9e-06
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 738 EVIGRSCHGTLYKAT--LDSGSILAVKRLR-----EGIAKGKKEFAREVKKLGNIKHPNL 790
IG +G ++KA + G +A+KR+R EG+ ++ L +HPN+
Sbjct: 13 AEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNV 72
Query: 791 VSLQGYYWGPKEHEK 805
V L + +
Sbjct: 73 VRLFDVCTVSRTDRE 87
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.6 bits (102), Expect = 1e-05
Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 5/123 (4%)
Query: 96 SVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPS 155
+++ L + + + + LDLSHN L P+ + +L+ L +L S N+
Sbjct: 4 HLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNAL--ENVD 59
Query: 156 GFGGLGKLKYLDLRANRF-GGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSI 214
G L +L+ L L NR + L +V ++L N + + + S+
Sbjct: 60 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 119
Query: 215 QYL 217
+
Sbjct: 120 SSI 122
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.6 bits (97), Expect = 5e-05
Identities = 22/106 (20%), Positives = 30/106 (28%), Gaps = 15/106 (14%)
Query: 405 KVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLP------------LQEIQNNPS 452
+V+ L+ L L +T L+LS N P +
Sbjct: 1 RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
Query: 453 TGSTQNLSLTSLDLAYNSL-SGRLLPGISKFHNLVYLNLSNNKFEG 497
G L L L N L + + LV LNL N
Sbjct: 59 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.4 bits (86), Expect = 0.001
Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 4/120 (3%)
Query: 292 LDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQN 351
L L+ L + ++LS N+L PA + L + + +
Sbjct: 3 LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62
Query: 352 WGNYVEDIHLSSNFLTGMVPNQT-SQFLRLTSFKVSNNSL---EGDLPAVLGTYPELKVI 407
++++ L +N L Q RL + NSL EG + P + I
Sbjct: 63 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.8 bits (82), Expect = 0.004
Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 10/128 (7%)
Query: 191 DLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHL 250
L++ + L + + +L++S N L + LEV AS+N
Sbjct: 4 HLAHKDLTVLCHLE-----QLLLVTHLDLSHNRLRA---LPPALAALRCLEVLQASDNA- 54
Query: 251 VGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSAT 310
+ + + L+ L L +N+L S + L L L+L N L G
Sbjct: 55 LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPR-LVLLNLQGNSLCQEEGIQERLA 113
Query: 311 LKKVNLSS 318
++SS
Sbjct: 114 EMLPSVSS 121
|
| >d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 9, CDK9 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (108), Expect = 1e-05
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGK--KEFAREVKKLGNIKHPNLVSLQ 794
IG+ G ++KA +G +A+K++ K RE+K L +KH N+V+L
Sbjct: 16 AKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLI 75
Query: 795 GYYW 798
Sbjct: 76 EICR 79
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 45.6 bits (106), Expect = 1e-05
Identities = 38/340 (11%), Positives = 90/340 (26%), Gaps = 26/340 (7%)
Query: 137 KNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGD----IMHLLSQLGSVVHVDL 192
K+L L I++ + + + +K + L N G + + ++ + +
Sbjct: 8 KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66
Query: 193 SNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVG 252
S+ D + +++ ++
Sbjct: 67 SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126
Query: 253 AIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLK 312
+ + + Q A + L + T + +
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186
Query: 313 KVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPN 372
++ +G P + H + L+ Q + ++ + +
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAY---------CQELKVLDLQDNTFTHLGSSALAI 237
Query: 373 QTSQFLRLTSFKVSNNSLEGDLPAVLGTY------PELKVIDLSLNHLNGFLLPSFFTS- 425
+ L +++ L A + L+ + L N + + + T
Sbjct: 238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 297
Query: 426 ----TKLTDLNLSGNNFSG-PLPLQEIQNNPSTGSTQNLS 460
L L L+GN FS + EI+ ST L
Sbjct: 298 DEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELD 337
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 42.6 bits (98), Expect = 1e-04
Identities = 42/356 (11%), Positives = 85/356 (23%), Gaps = 42/356 (11%)
Query: 162 KLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDS-SFISSIQYLNIS 220
LK + + +L + SV + LS N L ++ + ++ S
Sbjct: 9 SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67
Query: 221 ENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVA 280
+ + L L S N
Sbjct: 68 DIFT--GRVKDEIPEALRLLLQALLKCPKLHTVRLSDN---------------------- 103
Query: 281 LLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNN 340
L + L L + A N
Sbjct: 104 ------AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNA 157
Query: 341 RLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGT 400
+ +N + F + + + + + L L
Sbjct: 158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 217
Query: 401 YPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLS 460
+ + + L + + L +L L+ S + +N+
Sbjct: 218 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL---ENIG 274
Query: 461 LTSLDLAYNSLSGRLLPGI-----SKFHNLVYLNLSNNKF--EGSIPDGLPNGLKE 509
L +L L YN + + + K +L++L L+ N+F E + D +
Sbjct: 275 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFST 330
|
| >d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Proto-oncogene serine/threonine-protein kinase Pim-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.1 bits (106), Expect = 2e-05
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 10/97 (10%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLR------EGIAKGKKEFAREVKKLGNIK--HP 788
++G G++Y + +A+K + G EV L +
Sbjct: 10 PLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFS 69
Query: 789 NLVSLQGYYWGPKEHEKLVISNYINAQSLAVYLQGKG 825
++ L ++ P L++ Q L ++ +G
Sbjct: 70 GVIRLLDWFERPDSF-VLILERPEPVQDLFDFITERG 105
|
| >d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.6 bits (107), Expect = 2e-05
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKE---FAREVKKLGNIKHPNLVSL 793
+ +G G + +SG+ A+K L + K+ E + L + P LV L
Sbjct: 47 KTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKL 106
Query: 794 QGYYW 798
+ +
Sbjct: 107 EFSFK 111
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 44.3 bits (103), Expect = 2e-05
Identities = 31/231 (13%), Positives = 64/231 (27%), Gaps = 24/231 (10%)
Query: 262 SLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKL 321
+ + G + ++ ++ A L ++ L + G L + L N++
Sbjct: 20 NAIKIAAGKSNVTDTVTQADLDG----ITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI 75
Query: 322 SGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLT 381
+ +L+ + + + L
Sbjct: 76 -------TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128
Query: 382 SFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGP 441
S + + + LS+ + L +KLT L N S
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI 188
Query: 442 LPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSN 492
PL + N L + L N +S + ++ NL + L+N
Sbjct: 189 SPLASLPN-----------LIEVHLKNNQISD--VSPLANTSNLFIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 42.3 bits (98), Expect = 9e-05
Identities = 32/222 (14%), Positives = 65/222 (29%), Gaps = 22/222 (9%)
Query: 88 GLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSN 147
L ++ + + +T + + L + G+ L NL+ L + N
Sbjct: 17 ALANAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDN 73
Query: 148 SFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGD 207
T + L K+ L+L N Q + + + L
Sbjct: 74 QI--TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131
Query: 208 SSFISSIQYLNI-----------SENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPS 256
+ + + ++ + L A +N + I
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-ISP 190
Query: 257 FNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQ 298
+ +L + L +NQ+S P+A L + L+ NQ
Sbjct: 191 LASLPNLIEVHLKNNQISDVSPLANTSN----LFIVTLT-NQ 227
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 40.8 bits (94), Expect = 3e-04
Identities = 14/93 (15%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Query: 53 CPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSI 112
N +T++ +G + L L + +N++ I+ + S+
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-ISPLASL 194
Query: 113 QSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNIS 145
+L + L +N + P + + NL ++ ++
Sbjct: 195 PNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 38.5 bits (88), Expect = 0.002
Identities = 9/70 (12%), Positives = 25/70 (35%), Gaps = 13/70 (18%)
Query: 426 TKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNL 485
+ +N + + ++ +T+L ++ + G+ +NL
Sbjct: 19 ANAIKIAAGKSNVTDTVTQADLDG-----------ITTLSAFGTGVTT--IEGVQYLNNL 65
Query: 486 VYLNLSNNKF 495
+ L L +N+
Sbjct: 66 IGLELKDNQI 75
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 38.1 bits (87), Expect = 0.002
Identities = 25/211 (11%), Positives = 62/211 (29%), Gaps = 10/211 (4%)
Query: 309 ATLKKVNLSSNKLSGSLP-ARVGHCTIVDLSNNRLS-----GDLSRMQNWGNYVEDIHLS 362
A K+ + ++ ++ A + T + ++ L+ + I
Sbjct: 19 ANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDL 78
Query: 363 SNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSF 422
+ + + L+ L + V L+ L
Sbjct: 79 APLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL 138
Query: 423 FTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKF 482
T ++ L N + ++ + + L+ D N +S + ++
Sbjct: 139 NQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD--DNKISD--ISPLASL 194
Query: 483 HNLVYLNLSNNKFEGSIPDGLPNGLKEFNVS 513
NL+ ++L NN+ P + L ++
Sbjct: 195 PNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 38.1 bits (87), Expect = 0.002
Identities = 32/249 (12%), Positives = 71/249 (28%), Gaps = 26/249 (10%)
Query: 218 NISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSL 277
+I++ + + +FP P N A +++ + + + L ++
Sbjct: 2 SITQPTAINVIFPD---PALANAIKIAAGKSNVTDTVTQADLD-GITTLSAFGTGVTTIE 57
Query: 278 PVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDL 337
V L L L+L NQ+ L K+ +
Sbjct: 58 GVQYLNN----LIGLELKDNQITDL---APLKNLTKITELELSGNPLKNVSAIAGLQSIK 110
Query: 338 SNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAV 397
+ + S ++ + L + + N + +S + +
Sbjct: 111 TLDLTSTQITDVTPLAGLSNLQVLYLDL--NQITNISPLAGLTNLQYLSIGNAQVSDLTP 168
Query: 398 LGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQ 457
L +L + N ++ + + L +++L N S PL N
Sbjct: 169 LANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSPLANTSN-------- 218
Query: 458 NLSLTSLDL 466
L + L
Sbjct: 219 ---LFIVTL 224
|
| >d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Ribosomal protein S6 kinase alpha 5, Msk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.7 bits (102), Expect = 6e-05
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 738 EVIGRSCHGTLYKATL----DSGSILAVKRLREGI----AKGKKEFAREVKKLGNIKH-P 788
+V+G +G ++ D+G + A+K L++ AK + E + L +I+ P
Sbjct: 30 KVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSP 89
Query: 789 NLVSLQGYYWGPKEHEKLVISNYINAQSLAVYLQGK 824
LV+L +Y E + +I +YIN L +L +
Sbjct: 90 FLVTL--HYAFQTETKLHLILDYINGGELFTHLSQR 123
|
| >d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: RIO1-like kinases domain: Rio2 serine protein kinase C-terminal domain species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 41.7 bits (97), Expect = 1e-04
Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 10/71 (14%)
Query: 738 EVIGRSCHGTLYKATLDSGSILAVKRLREGIA----------KGKKEFAREVKKLGNIKH 787
+++G ++ + VK + G G F+ + +
Sbjct: 6 KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEF 65
Query: 788 PNLVSLQGYYW 798
L LQG
Sbjct: 66 RALQKLQGLAV 76
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 40.4 bits (93), Expect = 4e-04
Identities = 25/201 (12%), Positives = 61/201 (30%), Gaps = 22/201 (10%)
Query: 266 LRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSL 325
L ++ ++ L + ++ + + ++ G + K+ L+ NKL+
Sbjct: 29 DNLKKKSVTDAVTQNELNS----IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-- 82
Query: 326 PARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKV 385
+ + + + + + + +
Sbjct: 83 IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLG 142
Query: 386 SNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQ 445
+N + + + L L + D ++ + TKL +L LS N+ S L
Sbjct: 143 NNKITDITVLSRLTKLDTLSLEDNQISDI-----VPLAGLTKLQNLYLSKNHISDLRALA 197
Query: 446 EIQNNPSTGSTQNLSLTSLDL 466
++N L L+L
Sbjct: 198 GLKN-----------LDVLEL 207
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (90), Expect = 8e-04
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 109 IGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPS 155
LD+S H L G+ +LK L + + P+
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (87), Expect = 0.002
Identities = 10/55 (18%), Positives = 15/55 (27%)
Query: 115 LEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLR 169
E +N L ++L+IS G L KL+
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 39.8 bits (92), Expect = 0.001
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 3/72 (4%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGY 796
IG G +++ T L + +A+K + E + + + Y
Sbjct: 11 RRIGEGSFGVIFEGTNLLNNQQVAIKFEPR--RSDAPQLRDEYRTYKLLAGCTGIPNVYY 68
Query: 797 YWGPKEHEKLVI 808
+ H LVI
Sbjct: 69 FGQEGLHNVLVI 80
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.6 bits (91), Expect = 0.001
Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 738 EVIGRSCHGTLYKAT-LDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGY 796
+G T++ A + + + +A+K +R + E+K L + +
Sbjct: 19 RKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSM 77
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (85), Expect = 0.002
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 419 LPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPG 478
+ + + +L+L G + I+N +T ++D + N + R L G
Sbjct: 11 AAQYTNAVRDRELDLRGYK------IPVIENLGATLD----QFDAIDFSDNEI--RKLDG 58
Query: 479 ISKFHNLVYLNLSNNKFEGSIP 500
L L ++NN+
Sbjct: 59 FPLLRRLKTLLVNNNRICRIGE 80
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 37.3 bits (85), Expect = 0.004
Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 13/72 (18%)
Query: 426 TKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNL 485
+ L N + + ++ +T+L + + G+ +NL
Sbjct: 18 AEKMKTVLGKTNVTDTVSQTDLDQ-----------VTTLQADRLGIKS--IDGVEYLNNL 64
Query: 486 VYLNLSNNKFEG 497
+N SNN+
Sbjct: 65 TQINFSNNQLTD 76
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 832 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 100.0 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.95 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.93 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.92 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.91 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.9 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.86 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.85 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.83 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.83 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.78 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.74 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.7 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.7 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.7 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.69 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.69 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.68 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.68 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.66 | |
| d1sm2a_ | 263 | Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie | 99.56 | |
| d2j4za1 | 263 | Aurora-related kinase 1 (aurora-2) {Human (Homo sa | 99.53 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.53 | |
| d1xbba_ | 277 | Tyrosine-protein kinase SYK {Human (Homo sapiens) | 99.52 | |
| d1jksa_ | 293 | Death-associated protein kinase, Dap {Human (Homo | 99.52 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.52 | |
| d1k2pa_ | 258 | Bruton's tyrosine kinase (Btk) {Human (Homo sapien | 99.51 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.51 | |
| d1opja_ | 287 | Abelsone tyrosine kinase (abl) {Mouse (Mus musculu | 99.51 | |
| d1jpaa_ | 299 | ephb2 receptor tyrosine kinase {Mouse (Mus musculu | 99.51 | |
| d1a06a_ | 307 | Calmodulin-dependent protein kinase {Rat (Rattus n | 99.5 | |
| d1qpca_ | 272 | Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax | 99.5 | |
| d1nvra_ | 271 | Cell cycle checkpoint kinase chk1 {Human (Homo sap | 99.5 | |
| d1u59a_ | 285 | Tyrosine-protein kinase ZAP-70 {Human (Homo sapien | 99.49 | |
| d2jfla1 | 288 | STE20-like serine/threonine-protein kinase, SLK {H | 99.49 | |
| d1t4ha_ | 270 | Protein kinase wnk1 {Human (Homo sapiens) [TaxId: | 99.48 | |
| d2java1 | 269 | Serine/threonine-protein kinase Nek2 {Human (Homo | 99.48 | |
| d1s9ja_ | 322 | Dual specificity mitogen-activated protein kinase | 99.48 | |
| d1koaa2 | 350 | Twitchin, kinase domain {Caenorhabditis elegans, p | 99.48 | |
| d1yhwa1 | 293 | pak1 {Human (Homo sapiens) [TaxId: 9606]} | 99.48 | |
| d1byga_ | 262 | Carboxyl-terminal src kinase (csk) {Human (Homo sa | 99.48 | |
| d1fmka3 | 285 | c-src tyrosine kinase {Human (Homo sapiens) [TaxId | 99.47 | |
| d1uu3a_ | 288 | 3-phosphoinositide dependent protein kinase-1 Pdk1 | 99.47 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.47 | |
| d1phka_ | 277 | gamma-subunit of glycogen phosphorylase kinase (Ph | 99.45 | |
| d1koba_ | 352 | Twitchin, kinase domain {California sea hare (Aply | 99.45 | |
| d1tkia_ | 321 | Titin, kinase domain {Human (Homo sapiens) [TaxId: | 99.45 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.44 | |
| d1uwha_ | 276 | B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | 99.44 | |
| d1u5ra_ | 309 | Serine/threonine protein kinase TAO2 {Rat (Rattus | 99.44 | |
| d1fvra_ | 309 | Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | 99.43 | |
| d1fota_ | 316 | cAMP-dependent PK, catalytic subunit {Baker's yeas | 99.42 | |
| d1mqba_ | 283 | epha2 receptor tyrosine kinase {Human (Homo sapien | 99.42 | |
| d1r0pa_ | 311 | Hepatocyte growth factor receptor, c-MET {Human (H | 99.42 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.41 | |
| d1o6la_ | 337 | Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9 | 99.41 | |
| d1vjya_ | 303 | Type I TGF-beta receptor R4 {Human (Homo sapiens) | 99.38 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.36 | |
| d1p4oa_ | 308 | Insulin-like growth factor 1 receptor {Human (Homo | 99.36 | |
| d1o6ya_ | 277 | Mycobacterial protein kinase PknB, catalytic domai | 99.36 | |
| d1lufa_ | 301 | Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax | 99.36 | |
| d1t46a_ | 311 | c-KIT receptor {Human (Homo sapiens) [TaxId: 9606] | 99.36 | |
| d1xjda_ | 320 | Protein kinase C, theta type {Human (Homo sapiens) | 99.35 | |
| d1rjba_ | 325 | Fl cytokine receptor {Human (Homo sapiens) [TaxId: | 99.35 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.34 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.34 | |
| d1ua2a_ | 299 | Cell division protein kinase 7, CDK7 {Human (Homo | 99.33 | |
| d1mp8a_ | 273 | Focal adhesion kinase 1 (fak) {Human (Homo sapiens | 99.31 | |
| d1omwa3 | 364 | G-protein coupled receptor kinase 2 {Cow (Bos taur | 99.3 | |
| d1xkka_ | 317 | EGF receptor tyrosine kinase, Erbb-1 {Human (Homo | 99.3 | |
| d1rdqe_ | 350 | cAMP-dependent PK, catalytic subunit {Mouse (Mus m | 99.28 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.28 | |
| d1u46a_ | 273 | Activated CDC42 kinase 1, ACK1 {Human (Homo sapien | 99.28 | |
| d1ob3a_ | 286 | Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) | 99.27 | |
| d2ozaa1 | 335 | MAP kinase activated protein kinase 2, mapkap2 {Hu | 99.26 | |
| d1fgka_ | 299 | Fibroblast growth factor receptor 1 {Human (Homo s | 99.23 | |
| d1gz8a_ | 298 | Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T | 99.2 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.2 | |
| d1unla_ | 292 | Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T | 99.19 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.18 | |
| d1ywna1 | 299 | Vascular endothelial growth factor receptor 2 (kdr | 99.15 | |
| d1xwsa_ | 273 | Proto-oncogene serine/threonine-protein kinase Pim | 99.13 | |
| d1pmea_ | 345 | MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606 | 99.09 | |
| d1vzoa_ | 322 | Ribosomal protein S6 kinase alpha 5, Msk1 {Human ( | 99.08 | |
| d3bqca1 | 328 | Protein kinase CK2, alpha subunit {Rattus norvegic | 99.06 | |
| d1cm8a_ | 346 | MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: | 99.05 | |
| d1q5ka_ | 350 | Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho | 99.04 | |
| d2gfsa1 | 348 | MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606] | 99.04 | |
| d3blha1 | 318 | Cell division protein kinase 9, CDK9 {Human (Homo | 99.04 | |
| d2b1pa1 | 355 | c-jun N-terminal kinase (jnk3s) {Human (Homo sapie | 99.02 | |
| d1csna_ | 293 | Casein kinase-1, CK1 {Fission yeast (Schizosacchar | 98.87 | |
| d1ckia_ | 299 | Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax | 98.87 | |
| d1blxa_ | 305 | Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T | 98.82 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.3 | |
| d1zara2 | 191 | Rio2 serine protein kinase C-terminal domain {Arch | 98.3 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.24 | |
| d1q8ya_ | 362 | Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T | 98.2 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.74 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.33 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.0 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.06 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=100.00 E-value=6.1e-38 Score=333.44 Aligned_cols=292 Identities=25% Similarity=0.429 Sum_probs=255.8
Q ss_pred CCHHHHHHHHHhhhcCCCCCCcccccCccccCCCCCCCCCCCCccccCC----CcEEEEEeCCCCCccccC-cccccCCC
Q 003307 16 LGQSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITCTN----GYVTSIMLNDMGLVGNFS-FPTIIGLK 90 (832)
Q Consensus 16 ~~~~~~~~l~~~k~~~~~~~~~~~l~~w~~~~~~~~~c~~~w~gv~C~~----~~v~~l~l~~~~l~g~~~-~~~~~~l~ 90 (832)
..++|++||++||+++ .||. ++++|..+ .|||.|.|.||+|+. .+|++|+|+++++.|..+ ++.+++|+
T Consensus 3 c~~~e~~aLl~~k~~~-~~~~--~l~sW~~~---~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~ 76 (313)
T d1ogqa_ 3 CNPQDKQALLQIKKDL-GNPT--TLSSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP 76 (313)
T ss_dssp SCHHHHHHHHHHHHHT-TCCG--GGTTCCTT---SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCT
T ss_pred CCHHHHHHHHHHHHHC-CCCC--cCCCCCCC---CCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCc
Confidence 3588999999999999 4664 48999753 589988899999972 379999999999998532 57899999
Q ss_pred CCCEEEcCC-CCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeC
Q 003307 91 MLCNVSVSN-NQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDL 168 (832)
Q Consensus 91 ~L~~L~Ls~-n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 168 (832)
+|++|+|++ |+++|.+| .|+++++|++|+|++|+|.+..+..+..+.+|+.+++++|.+.+.+|..|.++++|+++++
T Consensus 77 ~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l 156 (313)
T d1ogqa_ 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156 (313)
T ss_dssp TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred cccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeec
Confidence 999999997 89999888 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccchhhhcCCCC-CEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccC
Q 003307 169 RANRFGGDIMHLLSQLGSV-VHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASN 247 (832)
Q Consensus 169 ~~N~l~~~~~~~l~~l~~L-~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~ 247 (832)
++|.+++.+|..+..+..+ +.+++++|++++..+..+..+ .+..++++++...+.++.. +..+++|+.+++++
T Consensus 157 ~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l----~~~~l~l~~~~~~~~~~~~--~~~~~~l~~l~~~~ 230 (313)
T d1ogqa_ 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL----NLAFVDLSRNMLEGDASVL--FGSDKNTQKIHLAK 230 (313)
T ss_dssp CSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC----CCSEEECCSSEEEECCGGG--CCTTSCCSEEECCS
T ss_pred ccccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccc--cccccccccccccc
Confidence 9999999999999998886 899999999999888766543 4457999999999888776 78899999999999
Q ss_pred CcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccC-CCCCCEEEecCCee
Q 003307 248 NHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSIT-SATLKKVNLSSNKL 321 (832)
Q Consensus 248 N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~-~~~L~~L~L~~N~l 321 (832)
|.+.+.++.+..+++|+.|+|++|+++|.+|..+ ..+++|++|+|++|+|+|.+|... ..+|+.+++++|+.
T Consensus 231 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l--~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~ 303 (313)
T d1ogqa_ 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL--TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp SEECCBGGGCCCCTTCCEEECCSSCCEECCCGGG--GGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSE
T ss_pred ccccccccccccccccccccCccCeecccCChHH--hCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCcc
Confidence 9999988888899999999999999999999988 567888888888888888777543 35677777777763
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.96 E-value=2.6e-29 Score=266.30 Aligned_cols=272 Identities=24% Similarity=0.348 Sum_probs=186.5
Q ss_pred CCCC-ccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCccc--CC-CCCCCCCCCEEECCC-CCCCccC
Q 003307 55 RNWF-GITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGN--IT-DIGSIQSLEFLDLSH-NLFHGLI 129 (832)
Q Consensus 55 ~~w~-gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~-~~~~l~~L~~L~Ls~-N~l~~~~ 129 (832)
.+|. +..|....+.+|.++..+- -.+++.|||++|.++|. +| ++++|++|++|+|++ |+++|.+
T Consensus 25 ~sW~~~~d~C~~~w~gv~C~~~~~-----------~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~i 93 (313)
T d1ogqa_ 25 SSWLPTTDCCNRTWLGVLCDTDTQ-----------TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI 93 (313)
T ss_dssp TTCCTTSCTTTTCSTTEEECCSSS-----------CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCC
T ss_pred CCCCCCCCCCCCcCCCeEEeCCCC-----------cEEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccc
Confidence 4684 5566433345555654321 13688999999999873 56 899999999999986 8898888
Q ss_pred cccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCC
Q 003307 130 PSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSS 209 (832)
Q Consensus 130 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 209 (832)
|..|++|++|++|+|++|++.+..+..+..+.+|+++++++|++.+.+|..+.+++.|+++++++|.++|.+|..+..+.
T Consensus 94 P~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~ 173 (313)
T d1ogqa_ 94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173 (313)
T ss_dssp CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred ccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccc
Confidence 99999999999999999999988888889999999999999998888888899999999999988888887776554331
Q ss_pred CCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCC
Q 003307 210 FISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMM 288 (832)
Q Consensus 210 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~ 288 (832)
. .++.++++.|++++..| .+..+ .+..+++..+.+.+.+|..+ ...+
T Consensus 174 ---~-------------------------l~~~l~~~~n~l~~~~~~~~~~l-~~~~l~l~~~~~~~~~~~~~--~~~~- 221 (313)
T d1ogqa_ 174 ---K-------------------------LFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLF--GSDK- 221 (313)
T ss_dssp ---T-------------------------TCCEEECCSSEEEEECCGGGGGC-CCSEEECCSSEEEECCGGGC--CTTS-
T ss_pred ---c-------------------------ccccccccccccccccccccccc-cccccccccccccccccccc--cccc-
Confidence 1 12455556666665555 33333 23345555555554444332 1111
Q ss_pred CCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcchhhccccCcccEEEcCCCcCCC
Q 003307 289 LSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTG 368 (832)
Q Consensus 289 L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~ 368 (832)
+++.+++++|.+++
T Consensus 222 ------------------------------------------------------------------~l~~l~~~~~~l~~ 235 (313)
T d1ogqa_ 222 ------------------------------------------------------------------NTQKIHLAKNSLAF 235 (313)
T ss_dssp ------------------------------------------------------------------CCSEEECCSSEECC
T ss_pred ------------------------------------------------------------------cccccccccccccc
Confidence 34445555555544
Q ss_pred CCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCc
Q 003307 369 MVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNN 437 (832)
Q Consensus 369 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 437 (832)
.+| .+..+++|+.|+|++|+|+|.+|..++++++|++|+|++|+|+|.+|. ++.+++|+.+++++|+
T Consensus 236 ~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 236 DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302 (313)
T ss_dssp BGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred ccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence 433 355566667777777777767777777777777777777777766653 4566677777777776
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.96 E-value=5.1e-27 Score=256.18 Aligned_cols=105 Identities=19% Similarity=0.278 Sum_probs=70.3
Q ss_pred cCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEe
Q 003307 87 IGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYL 166 (832)
Q Consensus 87 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 166 (832)
..+.+|++|+++++.++. +..+..+++|++|+|++|+|+++.| |+++++|++|++++|++++.. .++++++|+.|
T Consensus 41 ~~l~~l~~L~l~~~~I~~-l~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L 115 (384)
T d2omza2 41 TDLDQVTTLQADRLGIKS-IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGL 115 (384)
T ss_dssp HHHTTCCEEECCSSCCCC-CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEE
T ss_pred HHhCCCCEEECCCCCCCC-ccccccCCCCCEEeCcCCcCCCCcc--ccCCccccccccccccccccc--ccccccccccc
Confidence 345667777777777764 2456677777777777777776532 777777777777777777543 26777777777
Q ss_pred eCcCCCCCCccchhhhcCCCCCEEECccCcCc
Q 003307 167 DLRANRFGGDIMHLLSQLGSVVHVDLSNNQFS 198 (832)
Q Consensus 167 ~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 198 (832)
++++|.+++..+ ......+..+....|.+.
T Consensus 116 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~ 145 (384)
T d2omza2 116 TLFNNQITDIDP--LKNLTNLNRLELSSNTIS 145 (384)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC
T ss_pred cccccccccccc--cccccccccccccccccc
Confidence 777777765443 234455666666666554
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.95 E-value=9.4e-27 Score=254.01 Aligned_cols=356 Identities=20% Similarity=0.227 Sum_probs=207.0
Q ss_pred EcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCC
Q 003307 96 SVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGG 175 (832)
Q Consensus 96 ~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 175 (832)
.+..+.+++.+. ...+.+|++|++++|.|+.+ +.+..+++|++|+|++|+|++.. .|+++++|++|++++|++.+
T Consensus 28 ~l~~~~~~~~~~-~~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~ 102 (384)
T d2omza2 28 VLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIAD 102 (384)
T ss_dssp HTTCSSTTSEEC-HHHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred HhCCCCCCCccC-HHHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccc
Confidence 455566665443 34577899999999999865 46888999999999999999653 38999999999999999986
Q ss_pred ccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC
Q 003307 176 DIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP 255 (832)
Q Consensus 176 ~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 255 (832)
..+ ++++++|+.|++++|.+++..+.. ....+..+....|.+....... ................+ .
T Consensus 103 i~~--l~~l~~L~~L~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~----~ 169 (384)
T d2omza2 103 ITP--LANLTNLTGLTLFNNQITDIDPLK-----NLTNLNRLELSSNTISDISALS--GLTSLQQLSFGNQVTDL----K 169 (384)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCCCGGGT-----TCTTCSEEEEEEEEECCCGGGT--TCTTCSEEEEEESCCCC----G
T ss_pred ccc--cccccccccccccccccccccccc-----cccccccccccccccccccccc--ccccccccccccccchh----h
Confidence 543 788999999999999888543322 2345556666555553322111 11111111111111111 1
Q ss_pred CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEE
Q 003307 256 SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIV 335 (832)
Q Consensus 256 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L 335 (832)
.+.............|.... .... ..++.++.+++++|.+++..+.....+|++|++++|+++.. + .
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~--~~~~--~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~-~-~------- 236 (384)
T d2omza2 170 PLANLTTLERLDISSNKVSD--ISVL--AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-G-T------- 236 (384)
T ss_dssp GGTTCTTCCEEECCSSCCCC--CGGG--GGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-G-G-------
T ss_pred hhcccccccccccccccccc--cccc--ccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCc-c-h-------
Confidence 23333344444444444431 2222 34556677777777776655555555666666666665532 1 1
Q ss_pred ecCCCCCcCcchhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCccc
Q 003307 336 DLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLN 415 (832)
Q Consensus 336 ~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 415 (832)
+....+|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..++.++.++++.|.++
T Consensus 237 --------------l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~ 298 (384)
T d2omza2 237 --------------LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 298 (384)
T ss_dssp --------------GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCS
T ss_pred --------------hhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCCc--cccccccccccccccccc
Confidence 1112245666666666654332 5555666666666666654332 455566666666666665
Q ss_pred ccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcC
Q 003307 416 GFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKF 495 (832)
Q Consensus 416 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 495 (832)
+. ..+..+++++.|++++|++++..+. .... +|++|++++|+|++ + +.++++++|++|+|++|++
T Consensus 299 ~~--~~~~~~~~l~~L~ls~n~l~~l~~l--~~l~---------~L~~L~L~~n~l~~-l-~~l~~l~~L~~L~l~~N~l 363 (384)
T d2omza2 299 DI--SPISNLKNLTYLTLYFNNISDISPV--SSLT---------KLQRLFFANNKVSD-V-SSLANLTNINWLSAGHNQI 363 (384)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCSCCGGG--GGCT---------TCCEEECCSSCCCC-C-GGGGGCTTCCEEECCSSCC
T ss_pred cc--cccchhcccCeEECCCCCCCCCccc--ccCC---------CCCEEECCCCCCCC-C-hhHcCCCCCCEEECCCCcC
Confidence 42 3355566666666666666653321 1111 26666666666654 2 2466666666666666666
Q ss_pred cccCCCCccCCCcEEEcCCC
Q 003307 496 EGSIPDGLPNGLKEFNVSFN 515 (832)
Q Consensus 496 ~g~ip~~~~~~L~~l~ls~N 515 (832)
++..|-.-.++|+.|++++|
T Consensus 364 ~~l~~l~~l~~L~~L~L~~N 383 (384)
T d2omza2 364 SDLTPLANLTRITQLGLNDQ 383 (384)
T ss_dssp CBCGGGTTCTTCSEEECCCE
T ss_pred CCChhhccCCCCCEeeCCCC
Confidence 65444111146666666665
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=2e-24 Score=227.40 Aligned_cols=202 Identities=17% Similarity=0.227 Sum_probs=136.3
Q ss_pred CCCCCCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCcc
Q 003307 50 SDGCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGL 128 (832)
Q Consensus 50 ~~~c~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~ 128 (832)
+..|.|.|.+|.|+....++ + |+.+ .+++++|+|++|+|+...+ .|.++++|++|++++|.++.+
T Consensus 5 p~~c~c~~~~~~C~~~~L~~-----------l-P~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i 70 (305)
T d1xkua_ 5 PFRCQCHLRVVQCSDLGLEK-----------V-PKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70 (305)
T ss_dssp CTTCEEETTEEECTTSCCCS-----------C-CCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB
T ss_pred CCCCEecCCEEEecCCCCCc-----------c-CCCC--CCCCCEEECcCCcCCCcChhHhhcccccccccccccccccc
Confidence 45688889888886433332 2 2333 2579999999999998887 799999999999999999988
Q ss_pred CcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCC
Q 003307 129 IPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDS 208 (832)
Q Consensus 129 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 208 (832)
.|..|.++++|++|++++|+++. +|..+ ...|+.|++.+|.+.+..+..+.....+..++...|..... ......+
T Consensus 71 ~~~~f~~l~~L~~L~l~~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~-~~~~~~~ 146 (305)
T d1xkua_ 71 SPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-GIENGAF 146 (305)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG-GBCTTGG
T ss_pred chhhhhCCCccCEecccCCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhcccccccccccccccccc-CCCcccc
Confidence 88899999999999999999985 45443 35789999999999888888888888888888888765422 1122233
Q ss_pred CCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCC
Q 003307 209 SFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLS 274 (832)
Q Consensus 209 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~ 274 (832)
..+++|+.+++++|.++. ++. ..+++|+.|++++|...+..+ .+..++.++.|++++|.++
T Consensus 147 ~~l~~L~~l~l~~n~l~~-l~~----~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~ 208 (305)
T d1xkua_ 147 QGMKKLSYIRIADTNITT-IPQ----GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208 (305)
T ss_dssp GGCTTCCEEECCSSCCCS-CCS----SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred ccccccCccccccCCccc-cCc----ccCCccCEEECCCCcCCCCChhHhhcccccccccccccccc
Confidence 344555666666555542 111 123445555555554444443 3444444444444444444
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=7.9e-24 Score=222.80 Aligned_cols=81 Identities=28% Similarity=0.297 Sum_probs=44.0
Q ss_pred CCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCC
Q 003307 92 LCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRAN 171 (832)
Q Consensus 92 L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 171 (832)
++.+|-+++.++..++.+. +++++|+|++|+|+.+.+.+|.++++|++|++++|.+....|.+|.++++|++|++++|
T Consensus 12 ~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n 89 (305)
T d1xkua_ 12 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89 (305)
T ss_dssp TTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence 4455555555554333332 45555555555555544445555555555555555555555555555555555555555
Q ss_pred CCC
Q 003307 172 RFG 174 (832)
Q Consensus 172 ~l~ 174 (832)
+++
T Consensus 90 ~l~ 92 (305)
T d1xkua_ 90 QLK 92 (305)
T ss_dssp CCS
T ss_pred ccC
Confidence 554
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2e-24 Score=224.75 Aligned_cols=263 Identities=21% Similarity=0.174 Sum_probs=207.0
Q ss_pred EEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcc-c
Q 003307 69 SIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNIS-S 146 (832)
Q Consensus 69 ~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls-~ 146 (832)
.+++++.++. .+ |..+. +.+++|+|++|+|++..+ .|.++++|++|++++|.|..+.+..+..+..++.++.. .
T Consensus 15 ~v~c~~~~L~-~i-P~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~ 90 (284)
T d1ozna_ 15 TTSCPQQGLQ-AV-PVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (284)
T ss_dssp EEECCSSCCS-SC-CTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCCC-cc-CCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence 3455565555 33 22232 578999999999998887 79999999999999999999999999999999999765 6
Q ss_pred ccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCee
Q 003307 147 NSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVG 226 (832)
Q Consensus 147 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~ 226 (832)
|.++...+..|.++++|++|++++|.+....+..+..+++|+.+++++|++++..+..+ ..+++|+.|++++|++++
T Consensus 91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f---~~~~~L~~L~l~~N~l~~ 167 (284)
T d1ozna_ 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF---RDLGNLTHLFLHGNRISS 167 (284)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTTCCEEECCSSCCCE
T ss_pred cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHh---ccccchhhcccccCcccc
Confidence 77887888999999999999999999998888899999999999999999986544443 455889999999999986
Q ss_pred ccCCCCCCCCCCCcCEEEccCCcccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCCccCc
Q 003307 227 ELFPHDGMPYFDNLEVFDASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGS 305 (832)
Q Consensus 227 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~~~ 305 (832)
..+.. |..+++|+.+++++|++++..| .|..+++|++|++++|++.+..+..+ ..+++|++|++++|.+....+.
T Consensus 168 l~~~~--f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~--~~~~~L~~L~l~~N~l~C~C~~ 243 (284)
T d1ozna_ 168 VPERA--FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL--APLRALQYLRLNDNPWVCDCRA 243 (284)
T ss_dssp ECTTT--TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH--TTCTTCCEEECCSSCEECSGGG
T ss_pred cchhh--hccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccc--ccccccCEEEecCCCCCCCccc
Confidence 55544 8899999999999999998888 88999999999999999996655555 5688899999999988764331
Q ss_pred cC-CCCCCEEEecCCeecccCCCCCCCCCEEecCCCCC
Q 003307 306 IT-SATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRL 342 (832)
Q Consensus 306 ~~-~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l 342 (832)
.. ...++.+....+++....|..+.+....+++.+.+
T Consensus 244 ~~l~~~l~~~~~~~~~~~C~~p~~l~g~~l~~l~~~~l 281 (284)
T d1ozna_ 244 RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDL 281 (284)
T ss_dssp HHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGS
T ss_pred hHHHHHHHhCcCCCCceEeCCchHHcCCccccCCHHHC
Confidence 11 11344445555666666666555444444444443
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.2e-23 Score=216.85 Aligned_cols=130 Identities=14% Similarity=0.142 Sum_probs=91.5
Q ss_pred cccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEecc
Q 003307 355 YVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLS 434 (832)
Q Consensus 355 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 434 (832)
+|+.|++++|.+++..+..|.++++|+++++++|++++..|..|..+++|++|++++|++.+..+..|..+++|++|+|+
T Consensus 154 ~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~ 233 (284)
T d1ozna_ 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233 (284)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred chhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEec
Confidence 46666666666666667777778888888888888887778888888888888888888888888888888888888888
Q ss_pred CCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhhhcCCCCCEEeCcCCcCcc
Q 003307 435 GNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEG 497 (832)
Q Consensus 435 ~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 497 (832)
+|.+.+.-+...... .++.+....+.+....|..+.+ +..++++.+.|+|
T Consensus 234 ~N~l~C~C~~~~l~~----------~l~~~~~~~~~~~C~~p~~l~g---~~l~~l~~~~l~g 283 (284)
T d1ozna_ 234 DNPWVCDCRARPLWA----------WLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG 283 (284)
T ss_dssp SSCEECSGGGHHHHH----------HHHHCCSEECCCBEEESGGGTT---CBGGGSCGGGSCC
T ss_pred CCCCCCCccchHHHH----------HHHhCcCCCCceEeCCchHHcC---CccccCCHHHCCC
Confidence 888876443221111 1555666667777766765543 4445566666654
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1e-20 Score=194.11 Aligned_cols=195 Identities=19% Similarity=0.127 Sum_probs=111.4
Q ss_pred EEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEccc
Q 003307 68 TSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISS 146 (832)
Q Consensus 68 ~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 146 (832)
..|++++++|+. + |+.+. +++++|||++|+|++..+ .|.++++|++|+|++|+|+.+ | .++.+++|++|+|++
T Consensus 13 ~~v~C~~~~L~~-i-P~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls~ 86 (266)
T d1p9ag_ 13 LEVNCDKRNLTA-L-PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLSH 86 (266)
T ss_dssp CEEECTTSCCSS-C-CSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECCS
T ss_pred eEEEccCCCCCe-e-CcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccccccc
Confidence 345666666653 3 22232 467777777777776655 677777777777777777643 2 356677777777777
Q ss_pred ccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCee
Q 003307 147 NSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVG 226 (832)
Q Consensus 147 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~ 226 (832)
|+++. .+..+.++++|++|++++|.+.+..+..+..+.++++|++++|.++...+.. +..+++|+.|++++|++++
T Consensus 87 N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~---~~~l~~l~~l~l~~N~l~~ 162 (266)
T d1p9ag_ 87 NQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL---LTPTPKLEKLSLANNNLTE 162 (266)
T ss_dssp SCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT---TTTCTTCCEEECTTSCCSC
T ss_pred ccccc-cccccccccccccccccccccceeeccccccccccccccccccccceecccc---ccccccchhcccccccccc
Confidence 77763 4556777777777777777777666666666677777777777666332221 2223445555555555543
Q ss_pred ccCCCCCCCCCCCcCEEEccCCcccccCCCccccccccEEEccccCCC
Q 003307 227 ELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLS 274 (832)
Q Consensus 227 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~ 274 (832)
..+.. |..+++|+.|+|++|+|+...+.+..+++|+.|+|++|.+.
T Consensus 163 ~~~~~--~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 163 LPAGL--LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp CCTTT--TTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCccc--cccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence 32222 44444444444444444422223334444444444444443
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.1e-20 Score=194.06 Aligned_cols=202 Identities=21% Similarity=0.161 Sum_probs=172.4
Q ss_pred cCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEe
Q 003307 87 IGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYL 166 (832)
Q Consensus 87 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 166 (832)
.....+..+|.+++.++..++.+. ++|++|+|++|+|+++.+..|.++++|++|+|++|+|+.. | .++.+++|++|
T Consensus 7 ~~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L 82 (266)
T d1p9ag_ 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTL 82 (266)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEE
T ss_pred cccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccc
Confidence 345567778999999997544664 6899999999999988888999999999999999999954 3 46889999999
Q ss_pred eCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEcc
Q 003307 167 DLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDAS 246 (832)
Q Consensus 167 ~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls 246 (832)
+|++|+++. .+..+.++++|++|++++|.+.+..+.. +..+.+++.|++++|.++...+.. +..+++|+.++++
T Consensus 83 ~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~l~~l~~L~l~~n~l~~l~~~~--~~~l~~l~~l~l~ 156 (266)
T d1p9ag_ 83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGA---LRGLGELQELYLKGNELKTLPPGL--LTPTPKLEKLSLA 156 (266)
T ss_dssp ECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSST---TTTCTTCCEEECTTSCCCCCCTTT--TTTCTTCCEEECT
T ss_pred ccccccccc-cccccccccccccccccccccceeeccc---cccccccccccccccccceecccc--ccccccchhcccc
Confidence 999999985 4667899999999999999998544433 445689999999999998544433 7889999999999
Q ss_pred CCcccccCC-CccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCCC
Q 003307 247 NNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEG 301 (832)
Q Consensus 247 ~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~ 301 (832)
+|++++..+ .|..+++|++|+|++|+|+ .+|..++ ..++|+.|+|++|.+.-
T Consensus 157 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~--~~~~L~~L~L~~Np~~C 209 (266)
T d1p9ag_ 157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF--GSHLLPFAFLHGNPWLC 209 (266)
T ss_dssp TSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT--TTCCCSEEECCSCCBCC
T ss_pred cccccccCccccccccccceeecccCCCc-ccChhHC--CCCCCCEEEecCCCCCC
Confidence 999998777 6889999999999999999 8998884 57889999999998864
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.83 E-value=2.4e-18 Score=184.11 Aligned_cols=138 Identities=21% Similarity=0.260 Sum_probs=93.2
Q ss_pred CCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCc
Q 003307 90 KMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLR 169 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 169 (832)
.++++|||++|.++. +|+ .+++|++|+|++|+|+ .+|+. +.+|+.|++++|+++. ++.. .+.|++|+|+
T Consensus 38 ~~l~~LdLs~~~L~~-lp~--~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~-l~~l---p~~L~~L~L~ 106 (353)
T d1jl5a_ 38 RQAHELELNNLGLSS-LPE--LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVS 106 (353)
T ss_dssp HTCSEEECTTSCCSC-CCS--CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECC
T ss_pred cCCCEEEeCCCCCCC-CCC--CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccch-hhhh---cccccccccc
Confidence 368899999999875 443 2578999999999998 44654 4578999999998883 3321 1458899999
Q ss_pred CCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCc
Q 003307 170 ANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNH 249 (832)
Q Consensus 170 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 249 (832)
+|.+... |. ++.+++|++|++++|.++.... ....+..+.+..+.... ... +..++.++.++++.|.
T Consensus 107 ~n~l~~l-p~-~~~l~~L~~L~l~~~~~~~~~~-------~~~~l~~l~~~~~~~~~--~~~--l~~l~~l~~L~l~~n~ 173 (353)
T d1jl5a_ 107 NNQLEKL-PE-LQNSSFLKIIDVDNNSLKKLPD-------LPPSLEFIAAGNNQLEE--LPE--LQNLPFLTAIYADNNS 173 (353)
T ss_dssp SSCCSSC-CC-CTTCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSS--CCC--CTTCTTCCEEECCSSC
T ss_pred ccccccc-cc-hhhhccceeecccccccccccc-------ccccccchhhccccccc--ccc--ccccccceeccccccc
Confidence 9988754 33 5678888888888888763221 12455666665554432 111 4556666666666666
Q ss_pred cc
Q 003307 250 LV 251 (832)
Q Consensus 250 l~ 251 (832)
+.
T Consensus 174 ~~ 175 (353)
T d1jl5a_ 174 LK 175 (353)
T ss_dssp CS
T ss_pred cc
Confidence 55
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.83 E-value=6.7e-18 Score=180.54 Aligned_cols=200 Identities=24% Similarity=0.217 Sum_probs=134.9
Q ss_pred CcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEc
Q 003307 65 GYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNI 144 (832)
Q Consensus 65 ~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 144 (832)
..++.|+|++++++. +| + .+++|++|+|++|+|+.. |. .+.+|+.|++++|+++.+ +. + .+.|++|++
T Consensus 38 ~~l~~LdLs~~~L~~-lp-~---~~~~L~~L~Ls~N~l~~l-p~--~~~~L~~L~l~~n~l~~l-~~-l--p~~L~~L~L 105 (353)
T d1jl5a_ 38 RQAHELELNNLGLSS-LP-E---LPPHLESLVASCNSLTEL-PE--LPQSLKSLLVDNNNLKAL-SD-L--PPLLEYLGV 105 (353)
T ss_dssp HTCSEEECTTSCCSC-CC-S---CCTTCSEEECCSSCCSSC-CC--CCTTCCEEECCSSCCSCC-CS-C--CTTCCEEEC
T ss_pred cCCCEEEeCCCCCCC-CC-C---CCCCCCEEECCCCCCccc-cc--chhhhhhhhhhhcccchh-hh-h--ccccccccc
Confidence 356788999998864 42 2 256899999999999844 42 246889999999988843 22 1 146999999
Q ss_pred ccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCC
Q 003307 145 SSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSL 224 (832)
Q Consensus 145 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l 224 (832)
++|.++. +|. ++.+++|++|++++|.+..... ....+..+.+..+.... ...+..++.++.|++++|.+
T Consensus 106 ~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~~-----~~~l~~l~~l~~L~l~~n~~ 174 (353)
T d1jl5a_ 106 SNNQLEK-LPE-LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEE-----LPELQNLPFLTAIYADNNSL 174 (353)
T ss_dssp CSSCCSS-CCC-CTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSS-----CCCCTTCTTCCEEECCSSCC
T ss_pred ccccccc-ccc-hhhhccceeecccccccccccc----ccccccchhhccccccc-----cccccccccceecccccccc
Confidence 9999984 554 6789999999999998875433 24567788887776652 23345568889999999887
Q ss_pred eeccCCCCCCCCCCCcCEEEccCCcccccCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECCCCCCC
Q 003307 225 VGELFPHDGMPYFDNLEVFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLE 300 (832)
Q Consensus 225 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~ 300 (832)
.... ......+.+....+.+. .++.+..++.|+.+++++|... .++. ...++..+.+..+.+.
T Consensus 175 ~~~~------~~~~~~~~l~~~~~~~~-~~~~~~~l~~L~~l~l~~n~~~-~~~~-----~~~~l~~~~~~~~~~~ 237 (353)
T d1jl5a_ 175 KKLP------DLPLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLK-TLPD-----LPPSLEALNVRDNYLT 237 (353)
T ss_dssp SSCC------CCCTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCS-SCCS-----CCTTCCEEECCSSCCS
T ss_pred cccc------ccccccccccccccccc-cccccccccccccccccccccc-cccc-----cccccccccccccccc
Confidence 5321 11233455666655554 4556667788888888888765 3332 2234556666665554
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.78 E-value=3.1e-20 Score=180.30 Aligned_cols=137 Identities=22% Similarity=0.295 Sum_probs=114.7
Q ss_pred CCCCCCCCCccccCCCcEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCC--CCCCCCCCCEEECCCCCCCc
Q 003307 50 SDGCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNIT--DIGSIQSLEFLDLSHNLFHG 127 (832)
Q Consensus 50 ~~~c~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~l~~L~~L~Ls~N~l~~ 127 (832)
+..|.|.|..|.|+ +++|+ .+ |..+. +++++|+|++|+|++.++ .|..+++|++|+|++|.++.
T Consensus 3 P~~C~C~~~~v~Cs----------~~~L~-~i-P~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~ 68 (192)
T d1w8aa_ 3 PAMCHCEGTTVDCT----------GRGLK-EI-PRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 68 (192)
T ss_dssp CTTSEEETTEEECT----------TSCCS-SC-CSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC
T ss_pred CCCCEEcCCEEEEe----------CCCcC-cc-CCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccc
Confidence 45677777666664 44444 23 22332 689999999999987554 68899999999999999999
Q ss_pred cCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCccc
Q 003307 128 LIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGS 200 (832)
Q Consensus 128 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 200 (832)
..+..|..+++|++|+|++|+|+.+.|.+|.++++|++|+|++|+|+++.+.+|..+++|++|+|++|.+...
T Consensus 69 ~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~ 141 (192)
T d1w8aa_ 69 IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp BCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred ccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccc
Confidence 9999999999999999999999988888999999999999999999998899999999999999999988743
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=5.6e-20 Score=204.44 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=71.8
Q ss_pred CCCEEEcCCCCCcccC-C-CCCCCCCCCEEECCCCCCCc----cCcccccCCCCCCEEEccccccccc----CCCCCC-C
Q 003307 91 MLCNVSVSNNQLMGNI-T-DIGSIQSLEFLDLSHNLFHG----LIPSGIVSLKNLMLLNISSNSFEGT----FPSGFG-G 159 (832)
Q Consensus 91 ~L~~L~Ls~n~l~~~~-~-~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~-~ 159 (832)
+|+.||+++|++++.. . -+..+++++.|+|++|.|+. .++..+..+++|++|||++|.|+.. +...+. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 5677788888776542 1 35567777888888887763 2344566778888888888877531 222232 2
Q ss_pred CCCCCEeeCcCCCCCCc----cchhhhcCCCCCEEECccCcCc
Q 003307 160 LGKLKYLDLRANRFGGD----IMHLLSQLGSVVHVDLSNNQFS 198 (832)
Q Consensus 160 l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~ 198 (832)
..+|++|+|++|+++.. ++..+..+++|++|+|++|.++
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~ 125 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 125 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred CCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence 34688888888887644 3445666777888888888776
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=5.2e-17 Score=161.93 Aligned_cols=106 Identities=23% Similarity=0.300 Sum_probs=54.2
Q ss_pred ccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCE
Q 003307 86 IIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKY 165 (832)
Q Consensus 86 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 165 (832)
+..+.+|+.|++.+|.++.. +.+..+++|++|++++|.+++..| +..+++|++|++++|.++.. ..+.++++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~ 111 (227)
T d1h6ua2 37 QADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (227)
T ss_dssp HHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHHcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccccc--ccccccccccc
Confidence 34445555555555555532 345555555555555555554432 55555555555555555522 23555555555
Q ss_pred eeCcCCCCCCccchhhhcCCCCCEEECccCcCc
Q 003307 166 LDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFS 198 (832)
Q Consensus 166 L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 198 (832)
|+++++...+.. .+...+.+..+.++.+.+.
T Consensus 112 l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 142 (227)
T d1h6ua2 112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQIT 142 (227)
T ss_dssp EECTTSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred cccccccccccc--hhccccchhhhhchhhhhc
Confidence 555555544322 2344445555555555444
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=5.9e-17 Score=157.77 Aligned_cols=162 Identities=21% Similarity=0.294 Sum_probs=90.6
Q ss_pred cCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEe
Q 003307 87 IGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYL 166 (832)
Q Consensus 87 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 166 (832)
..+.+++.|++++|.++. ++.+..+++|++|+|++|+|++..| |.++++|++|++++|.+... + .+.++++|+.|
T Consensus 37 ~~l~~l~~L~l~~~~i~~-l~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L 111 (199)
T d2omxa2 37 TDLDQVTTLQADRLGIKS-IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLTGL 111 (199)
T ss_dssp HHHTTCCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEE
T ss_pred HHhcCCCEEECCCCCCCC-ccccccCCCcCcCccccccccCccc--ccCCcccccccccccccccc-c-ccccccccccc
Confidence 345566677777766653 2345666777777777777665433 66677777777777766632 2 36666677777
Q ss_pred eCcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEcc
Q 003307 167 DLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDAS 246 (832)
Q Consensus 167 ~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls 246 (832)
++++|.+... ..+..+++|+.|++++|++.. +..+..+++|+.|++.+|++++.. . +..+++|+.|+++
T Consensus 112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-----~~~l~~~~~L~~L~l~~n~l~~l~--~--l~~l~~L~~L~ls 180 (199)
T d2omxa2 112 TLFNNQITDI--DPLKNLTNLNRLELSSNTISD-----ISALSGLTSLQQLNFSSNQVTDLK--P--LANLTTLERLDIS 180 (199)
T ss_dssp ECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-----CGGGTTCTTCSEEECCSSCCCCCG--G--GTTCTTCCEEECC
T ss_pred cccccccccc--cccchhhhhHHhhhhhhhhcc-----cccccccccccccccccccccCCc--c--ccCCCCCCEEECC
Confidence 7766666543 235566666666666666652 112333455555555555554321 1 4445555555555
Q ss_pred CCcccccCCCccccccccE
Q 003307 247 NNHLVGAIPSFNFVFSLRI 265 (832)
Q Consensus 247 ~N~l~~~~~~~~~l~~L~~ 265 (832)
+|++++ ++.+..+++|+.
T Consensus 181 ~N~i~~-i~~l~~L~~L~~ 198 (199)
T d2omxa2 181 SNKVSD-ISVLAKLTNLES 198 (199)
T ss_dssp SSCCCC-CGGGGGCTTCSE
T ss_pred CCCCCC-CccccCCCCCCc
Confidence 555443 233444444443
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.70 E-value=7.9e-17 Score=160.60 Aligned_cols=74 Identities=15% Similarity=0.299 Sum_probs=45.4
Q ss_pred cccEEEcCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEecc
Q 003307 355 YVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLS 434 (832)
Q Consensus 355 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 434 (832)
+|+.|++++|.+++.. .+.++++|++|+|++|++++. + .++.+++|++|+|++|++++.. .+.++++|+.|+++
T Consensus 152 ~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 152 NLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT 225 (227)
T ss_dssp TCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred ccccccccccccccch--hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence 3555555555554322 255666777777777776643 2 2566677777777777776543 26667777777765
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.70 E-value=2e-17 Score=160.11 Aligned_cols=172 Identities=20% Similarity=0.215 Sum_probs=109.6
Q ss_pred CEEEecCCeecccCCCCC-CCCCEEecCCCCCcCcc-hhhccccCcccEEEcCCCcCCCCCcccccCCCCCCEEEccCCc
Q 003307 312 KKVNLSSNKLSGSLPARV-GHCTIVDLSNNRLSGDL-SRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNS 389 (832)
Q Consensus 312 ~~L~L~~N~l~~~~p~~l-~~l~~L~L~~N~l~~~~-~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 389 (832)
+.++.++++++ .+|..+ .++++|+|++|+|++.+ ...+....+|+.|+|++|.+.+..+..+..+++|++|+|++|+
T Consensus 11 ~~v~Cs~~~L~-~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~ 89 (192)
T d1w8aa_ 11 TTVDCTGRGLK-EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEEeCCCcC-ccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc
Confidence 45555555555 445444 34566666666665432 3444555567777887777777777777777778888888888
Q ss_pred CCCCcccccCCCCCCCEEEccCCcccccCcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCC
Q 003307 390 LEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYN 469 (832)
Q Consensus 390 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N 469 (832)
|+...|..|.++++|++|+|++|+|+++.+..|..+++|++|+|++|.+....+...... .++.+.+..|
T Consensus 90 l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~----------~l~~~~l~~~ 159 (192)
T d1w8aa_ 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE----------WLRKKSLNGG 159 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH----------HHHHHCCSGG
T ss_pred ccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhh----------hhhhhcccCC
Confidence 777667777777788888888888877777777777777777777777765433222111 1444555556
Q ss_pred cCcccCChhhhcCCCCCEEeCcCCcCcc
Q 003307 470 SLSGRLLPGISKFHNLVYLNLSNNKFEG 497 (832)
Q Consensus 470 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 497 (832)
.++...|.. +..++.++|+.|.|..
T Consensus 160 ~~~c~~p~~---l~~~~l~~L~~n~l~C 184 (192)
T d1w8aa_ 160 AARCGAPSK---VRDVQIKDLPHSEFKC 184 (192)
T ss_dssp GCBBCSSTT---TTTSBGGGSCTTTCCC
T ss_pred CeEeCCChh---hcCCEeeecCHhhCcC
Confidence 665555543 3344555666666654
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.5e-17 Score=167.83 Aligned_cols=184 Identities=16% Similarity=0.064 Sum_probs=116.2
Q ss_pred CCCCEEEcCCCCCcccCC-CCCCCCCCCEEECCCCCCCcc-CcccccCCCCCCEEEccc-ccccccCCCCCCCCCCCCEe
Q 003307 90 KMLCNVSVSNNQLMGNIT-DIGSIQSLEFLDLSHNLFHGL-IPSGIVSLKNLMLLNISS-NSFEGTFPSGFGGLGKLKYL 166 (832)
Q Consensus 90 ~~L~~L~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L 166 (832)
+++++|||++|.++...+ .|.++++|++|+|++|.+... .+..|.+++++++|++.. |++....+..|.++++|++|
T Consensus 29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l 108 (242)
T d1xwdc1 29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 108 (242)
T ss_dssp SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence 478888888888887666 688888888888888887654 345678888888888764 67777777788888888888
Q ss_pred eCcCCCCCCccch-hhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCE-EE
Q 003307 167 DLRANRFGGDIMH-LLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEV-FD 244 (832)
Q Consensus 167 ~L~~N~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~-L~ 244 (832)
++++|++....+. .+..++.+..+...++.+....+..+..+ ...++.|++++|+++.... . .....+++. ++
T Consensus 109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~--~~~l~~L~l~~n~l~~i~~-~--~~~~~~l~~~~~ 183 (242)
T d1xwdc1 109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL--SFESVILWLNKNGIQEIHN-C--AFNGTQLDELNL 183 (242)
T ss_dssp EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTS--BSSCEEEECCSSCCCEECT-T--TTTTCCEEEEEC
T ss_pred ccchhhhcccccccccccccccccccccccccccccccccccc--cccceeeeccccccccccc-c--cccchhhhcccc
Confidence 8888887654332 33455556666666666653322222221 1356666777666653222 2 222333333 34
Q ss_pred ccCCcccccCC-CccccccccEEEccccCCCCCCCh
Q 003307 245 ASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPV 279 (832)
Q Consensus 245 Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~ 279 (832)
+++|+++...+ .|..+++|++|+|++|+|+ .+|.
T Consensus 184 l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~ 218 (242)
T d1xwdc1 184 SDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS 218 (242)
T ss_dssp TTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCS
T ss_pred ccccccccccHHHhcCCCCCCEEECCCCcCC-ccCH
Confidence 55566654333 4566666666666666665 4443
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.69 E-value=8.7e-17 Score=157.95 Aligned_cols=165 Identities=21% Similarity=0.266 Sum_probs=106.9
Q ss_pred CCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEee
Q 003307 88 GLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLD 167 (832)
Q Consensus 88 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 167 (832)
.+..|+.|++++|.+... +.+..+++|++|+|++|.|++.. .++.+++|++|++++|+|++ +| .+.++++|+.|+
T Consensus 44 ~L~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~ 118 (210)
T d1h6ta2 44 ELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (210)
T ss_dssp HHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred HhcCccEEECcCCCCCCc-hhHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccc
Confidence 355677777777777653 24667777778888877777653 35677777888887777774 33 477777777777
Q ss_pred CcCCCCCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccC
Q 003307 168 LRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASN 247 (832)
Q Consensus 168 L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~ 247 (832)
+++|.+.. ...+..+++|+.+++++|.+++. ..+..+++|+.+++++|++++.. . +.++++|+.|++++
T Consensus 119 l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~-----~~~~~l~~L~~l~l~~n~l~~i~--~--l~~l~~L~~L~Ls~ 187 (210)
T d1h6ta2 119 LEHNGISD--INGLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQISDIV--P--LAGLTKLQNLYLSK 187 (210)
T ss_dssp CTTSCCCC--CGGGGGCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCCCCG--G--GTTCTTCCEEECCS
T ss_pred cccccccc--ccccccccccccccccccccccc-----ccccccccccccccccccccccc--c--ccCCCCCCEEECCC
Confidence 77777653 23467777777777777777632 12233466666666666665321 1 55566666666666
Q ss_pred CcccccCCCccccccccEEEcc
Q 003307 248 NHLVGAIPSFNFVFSLRILRLG 269 (832)
Q Consensus 248 N~l~~~~~~~~~l~~L~~L~L~ 269 (832)
|+++. ++.+..+++|++|+|+
T Consensus 188 N~i~~-l~~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 188 NHISD-LRALAGLKNLDVLELF 208 (210)
T ss_dssp SCCCB-CGGGTTCTTCSEEEEE
T ss_pred CCCCC-ChhhcCCCCCCEEEcc
Confidence 66653 3455666666666664
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=4.4e-19 Score=197.13 Aligned_cols=404 Identities=19% Similarity=0.123 Sum_probs=217.6
Q ss_pred cEEEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCccc----CC-CCCCCCCCCEEECCCCCCCcc----Cccccc-C
Q 003307 66 YVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGN----IT-DIGSIQSLEFLDLSHNLFHGL----IPSGIV-S 135 (832)
Q Consensus 66 ~v~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~-~~~~l~~L~~L~Ls~N~l~~~----~p~~~~-~ 135 (832)
.++.||++.+++++..-..-+..++++++|+|++|.++.. +. .+..+++|++|||++|.|+.. +...+. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 4789999999988642123466789999999999998742 23 467899999999999998642 222332 2
Q ss_pred CCCCCEEEccccccccc----CCCCCCCCCCCCEeeCcCCCCCCccchhhh-----cCCCCCEEECccCcCccccC-CCC
Q 003307 136 LKNLMLLNISSNSFEGT----FPSGFGGLGKLKYLDLRANRFGGDIMHLLS-----QLGSVVHVDLSNNQFSGSLD-LGL 205 (832)
Q Consensus 136 l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~-----~l~~L~~L~Ls~N~l~~~~~-~~~ 205 (832)
..+|++|+|++|+++.. ++..+..+++|++|+|++|.++......+. .......+......+..... ...
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 162 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence 35899999999999853 456678899999999999998744333222 12223344443333321000 000
Q ss_pred CCCCCCCCccEEECCCCCCeeccCCC--CCC-CCCCCcCEEEccCCcccccC-----CCccccccccEEEccccCCCCCC
Q 003307 206 GDSSFISSIQYLNISENSLVGELFPH--DGM-PYFDNLEVFDASNNHLVGAI-----PSFNFVFSLRILRLGSNQLSGSL 277 (832)
Q Consensus 206 ~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~-~~l~~L~~L~Ls~N~l~~~~-----~~~~~l~~L~~L~L~~N~l~~~~ 277 (832)
..+.....++.++++.+......... ..+ ........+++..+.+.... ..+.....++.+++..|++....
T Consensus 163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~ 242 (460)
T d1z7xw1 163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242 (460)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence 00111244555555555443210000 000 01122334444444332110 01223344555555555442110
Q ss_pred Chh---hhhhCCCCCCEEECCCCCCCCccCccCCCCCCEEEecCCeecccCCCCCCCCCEEecCCCCCcCcch-----hh
Q 003307 278 PVA---LLQESSMMLSELDLSLNQLEGPVGSITSATLKKVNLSSNKLSGSLPARVGHCTIVDLSNNRLSGDLS-----RM 349 (832)
Q Consensus 278 p~~---~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~l~~L~L~~N~l~~~~~-----~~ 349 (832)
... ........++.+++++|.+......... ........+..+++++|.+++... .+
T Consensus 243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~---------------~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l 307 (460)
T d1z7xw1 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC---------------RVLRAKESLKELSLAGNELGDEGARLLCETL 307 (460)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH---------------HHHHHCTTCCEEECTTCCCHHHHHHHHHHHH
T ss_pred cchhhccccccccccccccccccccccccccccc---------------ccccccccccccccccccccccccchhhccc
Confidence 000 0001223344444444444321110000 000112344555566655543211 11
Q ss_pred ccccCcccEEEcCCCcCCCCCcc----cccCCCCCCEEEccCCcCCCC----cccccC-CCCCCCEEEccCCccccc---
Q 003307 350 QNWGNYVEDIHLSSNFLTGMVPN----QTSQFLRLTSFKVSNNSLEGD----LPAVLG-TYPELKVIDLSLNHLNGF--- 417 (832)
Q Consensus 350 ~~~~~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~----~p~~~~-~l~~L~~L~Ls~N~l~~~--- 417 (832)
......|+.+++++|.++..... .+....+|++|+|++|+|++. ++..+. ..+.|++|+|++|.|+..
T Consensus 308 ~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~ 387 (460)
T d1z7xw1 308 LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCS 387 (460)
T ss_dssp TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH
T ss_pred cccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHH
Confidence 22233578888888877654322 334556788888888888643 233333 456789999999988753
Q ss_pred -CcccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCcccCChhh----hcCCCCCEE
Q 003307 418 -LLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGI----SKFHNLVYL 488 (832)
Q Consensus 418 -~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l----~~l~~L~~L 488 (832)
+...+..+++|++|+|++|+|+......+... +..+...|+.|++.+|.+.......+ ...++|+.|
T Consensus 388 ~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~----l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~ 459 (460)
T d1z7xw1 388 SLAATLLANHSLRELDLSNNCLGDAGILQLVES----VRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459 (460)
T ss_dssp HHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHH----HTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHH----HHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence 33445667889999999998874322222110 01112248999999999886555444 234566554
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.68 E-value=8.5e-17 Score=158.04 Aligned_cols=181 Identities=18% Similarity=0.249 Sum_probs=128.9
Q ss_pred EEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCC
Q 003307 94 NVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRF 173 (832)
Q Consensus 94 ~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 173 (832)
..++..+.+++.++ ...+.+|++|++++|.++... .+..+++|++|+|++|+|++.. .++++++|++|++++|++
T Consensus 28 ~~~l~~~~~~~~~~-~~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i 102 (210)
T d1h6ta2 28 KDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKV 102 (210)
T ss_dssp HHHTTCSCTTSEEC-HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred HHHhCcCccCCccC-HHHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccc
Confidence 34566666665443 234678999999999988653 4788999999999999998643 378899999999999998
Q ss_pred CCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCccccc
Q 003307 174 GGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGA 253 (832)
Q Consensus 174 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 253 (832)
++. + .+..+++|+.|++++|.+.. +..+..++.|+.+++++|.+++.. . +..+++|+.+++++|++++.
T Consensus 103 ~~l-~-~l~~l~~L~~L~l~~~~~~~-----~~~l~~l~~l~~l~~~~n~l~~~~--~--~~~l~~L~~l~l~~n~l~~i 171 (210)
T d1h6ta2 103 KDL-S-SLKDLKKLKSLSLEHNGISD-----INGLVHLPQLESLYLGNNKITDIT--V--LSRLTKLDTLSLEDNQISDI 171 (210)
T ss_dssp CCG-G-GGTTCTTCCEEECTTSCCCC-----CGGGGGCTTCCEEECCSSCCCCCG--G--GGGCTTCSEEECCSSCCCCC
T ss_pred ccc-c-cccccccccccccccccccc-----cccccccccccccccccccccccc--c--cccccccccccccccccccc
Confidence 753 3 47888999999999888762 223445677888888888776422 2 45677777888887777653
Q ss_pred CCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEEECC
Q 003307 254 IPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLS 295 (832)
Q Consensus 254 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~ 295 (832)
+.+..+++|+.|+|++|+++ .+| .+ ..+++|++|+|+
T Consensus 172 -~~l~~l~~L~~L~Ls~N~i~-~l~-~l--~~l~~L~~L~Ls 208 (210)
T d1h6ta2 172 -VPLAGLTKLQNLYLSKNHIS-DLR-AL--AGLKNLDVLELF 208 (210)
T ss_dssp -GGGTTCTTCCEEECCSSCCC-BCG-GG--TTCTTCSEEEEE
T ss_pred -ccccCCCCCCEEECCCCCCC-CCh-hh--cCCCCCCEEEcc
Confidence 34667777777777777776 344 23 345666666654
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.1e-16 Score=161.33 Aligned_cols=86 Identities=16% Similarity=0.107 Sum_probs=69.1
Q ss_pred CCCCEEECCCCCCCccCcccccCCCCCCEEEccccccccc-CCCCCCCCCCCCEeeCc-CCCCCCccchhhhcCCCCCEE
Q 003307 113 QSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGT-FPSGFGGLGKLKYLDLR-ANRFGGDIMHLLSQLGSVVHV 190 (832)
Q Consensus 113 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~-~N~l~~~~~~~l~~l~~L~~L 190 (832)
+++++|||++|.|+.+.+..|.++++|++|+|++|.+... .+.+|.+++++++|++. .|++....+..|.++++|++|
T Consensus 29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l 108 (242)
T d1xwdc1 29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 108 (242)
T ss_dssp SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence 5789999999999877777888999999999999988754 35578888888888876 467777777777888888888
Q ss_pred ECccCcCc
Q 003307 191 DLSNNQFS 198 (832)
Q Consensus 191 ~Ls~N~l~ 198 (832)
++++|.+.
T Consensus 109 ~l~~~~l~ 116 (242)
T d1xwdc1 109 LISNTGIK 116 (242)
T ss_dssp EEESCCCC
T ss_pred ccchhhhc
Confidence 88887775
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=4.3e-16 Score=151.56 Aligned_cols=179 Identities=18% Similarity=0.268 Sum_probs=130.9
Q ss_pred CEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCC
Q 003307 93 CNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANR 172 (832)
Q Consensus 93 ~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 172 (832)
..+.++.+.+++.++ ...+.++++|++++|.++.+ +.+..+++|++|++++|++++..| |+++++|++|++++|.
T Consensus 21 i~~~l~~~~~~~~~~-~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~ 95 (199)
T d2omxa2 21 MKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ 95 (199)
T ss_dssp HHHHTTCSSTTSEEC-HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred HHHHhCCCCCCCccC-HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCcccccccccccc
Confidence 344566677766443 34578899999999999864 357889999999999999986543 8899999999999998
Q ss_pred CCCccchhhhcCCCCCEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCeeccCCCCCCCCCCCcCEEEccCCcccc
Q 003307 173 FGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVG 252 (832)
Q Consensus 173 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 252 (832)
+.... .+.+++.|++|++++|.+.... .+..+++|+.|++++|.+... +. +..+++|+.|++.+|++++
T Consensus 96 ~~~~~--~l~~l~~L~~L~l~~~~~~~~~-----~~~~l~~L~~L~l~~n~l~~~--~~--l~~~~~L~~L~l~~n~l~~ 164 (199)
T d2omxa2 96 IADIT--PLANLTNLTGLTLFNNQITDID-----PLKNLTNLNRLELSSNTISDI--SA--LSGLTSLQQLNFSSNQVTD 164 (199)
T ss_dssp CCCCG--GGTTCTTCSEEECCSSCCCCCG-----GGTTCTTCSEEECCSSCCCCC--GG--GTTCTTCSEEECCSSCCCC
T ss_pred ccccc--cccccccccccccccccccccc-----ccchhhhhHHhhhhhhhhccc--cc--ccccccccccccccccccC
Confidence 87543 4788999999999988887422 244567888888888887532 22 6677888888888888775
Q ss_pred cCCCccccccccEEEccccCCCCCCChhhhhhCCCCCCEE
Q 003307 253 AIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSEL 292 (832)
Q Consensus 253 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L 292 (832)
. +.+..+++|++|++++|++++ ++ .+ ..+++|+.|
T Consensus 165 l-~~l~~l~~L~~L~ls~N~i~~-i~-~l--~~L~~L~~L 199 (199)
T d2omxa2 165 L-KPLANLTTLERLDISSNKVSD-IS-VL--AKLTNLESL 199 (199)
T ss_dssp C-GGGTTCTTCCEEECCSSCCCC-CG-GG--GGCTTCSEE
T ss_pred C-ccccCCCCCCEEECCCCCCCC-Cc-cc--cCCCCCCcC
Confidence 3 446777888888888888773 33 23 345555543
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=3.2e-15 Score=151.96 Aligned_cols=91 Identities=23% Similarity=0.360 Sum_probs=79.7
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
...||+|+||.||+|++.++..||||+++... ...++|.+|++++++++|||||+++|+|...+. .++|||||++|+
T Consensus 10 ~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~-~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~--~~lv~E~~~~g~ 86 (263)
T d1sm2a_ 10 VQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAP--ICLVFEFMEHGC 86 (263)
T ss_dssp EEEEECCSSCCEEEEEETTTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS--CEEEEECCTTCB
T ss_pred EEEEeeCCCeEEEEEEECCCCEEEEEEECCCc-CcHHHHHHHHHHHHhcCCCCcccccceeccCCc--eEEEEEecCCCc
Confidence 56799999999999999888899999996543 345789999999999999999999999988777 999999999999
Q ss_pred HHHHHhcC-CCcccc
Q 003307 817 LAVYLQGK-GLVLWF 830 (832)
Q Consensus 817 L~~~l~~~-~~l~w~ 830 (832)
|.++++.. ..++|+
T Consensus 87 L~~~l~~~~~~~~~~ 101 (263)
T d1sm2a_ 87 LSDYLRTQRGLFAAE 101 (263)
T ss_dssp HHHHHHTTTTCCCHH
T ss_pred HHHHhhccccCCCHH
Confidence 99998765 446664
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=6.1e-15 Score=149.42 Aligned_cols=92 Identities=26% Similarity=0.337 Sum_probs=80.0
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||+||+|+.. +|+.||||++.... ....+.+.+|++++++++|||||++++++.+.+. .++|||||
T Consensus 11 ~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~--~~ivmEy~ 88 (263)
T d2j4za1 11 GRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATR--VYLILEYA 88 (263)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSE--EEEEEECC
T ss_pred EEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCE--EEEEEeec
Confidence 578999999999999984 89999999985321 2235679999999999999999999999998777 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.++++..+.+++.
T Consensus 89 ~~g~L~~~l~~~~~l~e~ 106 (263)
T d2j4za1 89 PLGTVYRELQKLSKFDEQ 106 (263)
T ss_dssp TTCBHHHHHHHHSSCCHH
T ss_pred CCCcHHHHHhhcCCCCHH
Confidence 999999999987777764
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.53 E-value=1.1e-14 Score=128.98 Aligned_cols=103 Identities=24% Similarity=0.366 Sum_probs=82.0
Q ss_pred CEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCC
Q 003307 93 CNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANR 172 (832)
Q Consensus 93 ~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 172 (832)
+.|||++|+++.. +.+..+++|++||+++|.|+. +|+.|+.+++|++|++++|.|++. | .|.++++|++|++++|+
T Consensus 1 R~L~Ls~n~l~~l-~~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~ 76 (124)
T d1dcea3 1 RVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNR 76 (124)
T ss_dssp SEEECTTSCCSSC-CCGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCCCCC-cccccCCCCCEEECCCCccCc-chhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCc
Confidence 5788888888743 468888888888888888884 466788888888888888888853 3 48888888888888888
Q ss_pred CCCcc-chhhhcCCCCCEEECccCcCcc
Q 003307 173 FGGDI-MHLLSQLGSVVHVDLSNNQFSG 199 (832)
Q Consensus 173 l~~~~-~~~l~~l~~L~~L~Ls~N~l~~ 199 (832)
|+... ...+..+++|++|++++|+++.
T Consensus 77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~ 104 (124)
T d1dcea3 77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104 (124)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred cCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence 87654 3567888888888888888873
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=9.2e-15 Score=149.54 Aligned_cols=90 Identities=21% Similarity=0.225 Sum_probs=75.7
Q ss_pred CeeeeccCceEEEEEEC---CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 738 EVIGRSCHGTLYKATLD---SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~~---~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
..||+|+||+||+|++. .++.||||+++.. .....++|.+|+++|++++|||||+++|+|... . .++|||||
T Consensus 13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~-~--~~lvmE~~ 89 (277)
T d1xbba_ 13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAE-S--WMLVMEMA 89 (277)
T ss_dssp EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESS-S--EEEEEECC
T ss_pred CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEeccC-C--EEEEEEcC
Confidence 46999999999999863 4568999998543 223356799999999999999999999999753 4 78999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.++++..+.++|.
T Consensus 90 ~~g~L~~~l~~~~~l~~~ 107 (277)
T d1xbba_ 90 ELGPLNKYLQQNRHVKDK 107 (277)
T ss_dssp TTEEHHHHHHHCTTCCHH
T ss_pred CCCcHHHHHhhccCCCHH
Confidence 999999999998888875
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.1e-14 Score=150.49 Aligned_cols=92 Identities=22% Similarity=0.318 Sum_probs=80.2
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC------hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI------AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~------~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
.+.||+|+||+||+|+. .+|+.||||+++... ....+.|.+|+++|++++|||||++++++.+.+. .++||
T Consensus 15 ~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~--~~iv~ 92 (293)
T d1jksa_ 15 GEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTD--VILIL 92 (293)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE--EEEEE
T ss_pred eEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE--EEEEE
Confidence 67899999999999997 589999999985321 1235789999999999999999999999998777 99999
Q ss_pred ecCCCCCHHHHHhcCCCcccc
Q 003307 810 NYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~~l~w~ 830 (832)
|||++|+|.++|...+.+++.
T Consensus 93 E~~~gg~L~~~i~~~~~l~~~ 113 (293)
T d1jksa_ 93 ELVAGGELFDFLAEKESLTEE 113 (293)
T ss_dssp ECCCSCBHHHHHHHHSSCCHH
T ss_pred EcCCCccccchhccccccchh
Confidence 999999999999887777764
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=3.9e-15 Score=138.83 Aligned_cols=113 Identities=16% Similarity=0.055 Sum_probs=73.4
Q ss_pred ccccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCC
Q 003307 84 PTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKL 163 (832)
Q Consensus 84 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 163 (832)
+.+.+...++.|||++|+|+.....+..+++|++|||++|.|+.+ +.|..+++|++|++++|+++...+..+..+++|
T Consensus 12 ~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L 89 (162)
T d1a9na_ 12 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 89 (162)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred HhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccc
Confidence 345566667777777777765533445667777777777777644 246677777777777777775544455667777
Q ss_pred CEeeCcCCCCCCccc-hhhhcCCCCCEEECccCcCc
Q 003307 164 KYLDLRANRFGGDIM-HLLSQLGSVVHVDLSNNQFS 198 (832)
Q Consensus 164 ~~L~L~~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~ 198 (832)
++|+|++|+|+.... ..+..+++|++|++++|.++
T Consensus 90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~ 125 (162)
T d1a9na_ 90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 125 (162)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred ccceeccccccccccccccccccccchhhcCCCccc
Confidence 777777777764322 45666677777777777665
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.1e-14 Score=147.17 Aligned_cols=90 Identities=23% Similarity=0.328 Sum_probs=78.5
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
.+.||+|+||.||+|++++++.||||+++.... ..++|.+|++++++++|||||+++|+|.+.+. .++|||||++|+
T Consensus 9 ~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~-~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~--~~iv~Ey~~~g~ 85 (258)
T d1k2pa_ 9 LKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRP--IFIITEYMANGC 85 (258)
T ss_dssp CCCCCEETTEEEEEEEETTTEEEEEEEEESSSS-CHHHHHHHHHHHHTCCCTTBCCEEEEECCSSS--EEEEEECCTTEE
T ss_pred eEEEecCCCeEEEEEEECCCCEEEEEEECcCcC-CHHHHHHHHHHHHhcCCCceeeEEEEEeeCCc--eEEEEEccCCCc
Confidence 678999999999999998888999999975433 45789999999999999999999999988777 999999999999
Q ss_pred HHHHHhcC-CCccc
Q 003307 817 LAVYLQGK-GLVLW 829 (832)
Q Consensus 817 L~~~l~~~-~~l~w 829 (832)
|.+++... ..++|
T Consensus 86 l~~~~~~~~~~~~~ 99 (258)
T d1k2pa_ 86 LLNYLREMRHRFQT 99 (258)
T ss_dssp HHHHHHSGGGCCCH
T ss_pred HHHhhhccccCCcH
Confidence 99997654 34544
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=9.8e-16 Score=157.86 Aligned_cols=256 Identities=14% Similarity=0.133 Sum_probs=152.2
Q ss_pred EEEEeCCCCCccccCcccccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCcc-CcccccCCCCCCEEEccc
Q 003307 68 TSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGL-IPSGIVSLKNLMLLNISS 146 (832)
Q Consensus 68 ~~l~l~~~~l~g~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~ 146 (832)
+.+|+++..+.+.. ...+.. ..+..+.++...+...........+|++|||++|.++.. ++..+..+++|++|+|++
T Consensus 3 ~~lDLs~~~l~~~~-l~~l~~-~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~ 80 (284)
T d2astb2 3 QTLDLTGKNLHPDV-TGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80 (284)
T ss_dssp SEEECTTCBCCHHH-HHHHHH-TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred CEEECCCCCCCchH-HHHHHh-ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence 46777776664332 111111 234566666655544333445567888888888887644 344567788888888888
Q ss_pred ccccccCCCCCCCCCCCCEeeCcCC-CCCCcc-chhhhcCCCCCEEECccC-cCccc-cCCCCCCCCCCCCccEEECCCC
Q 003307 147 NSFEGTFPSGFGGLGKLKYLDLRAN-RFGGDI-MHLLSQLGSVVHVDLSNN-QFSGS-LDLGLGDSSFISSIQYLNISEN 222 (832)
Q Consensus 147 N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~-~~~l~~l~~L~~L~Ls~N-~l~~~-~~~~~~~~~~l~~L~~L~L~~N 222 (832)
|.+++..+..++.+++|++|+|+++ .++... ...+.++++|++|+++++ .++.. +...+.. ..++|+.|+++++
T Consensus 81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~--~~~~L~~L~l~~~ 158 (284)
T d2astb2 81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH--VSETITQLNLSGY 158 (284)
T ss_dssp CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH--SCTTCCEEECCSC
T ss_pred cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcc--cccccchhhhccc
Confidence 8887777777888888888888885 455322 233457888888888875 34321 1111111 1267888888765
Q ss_pred C--CeeccCCCCCCCCCCCcCEEEccCCc-ccccCC-CccccccccEEEcccc-CCCCCCChhhhhhCCCCCCEEECCCC
Q 003307 223 S--LVGELFPHDGMPYFDNLEVFDASNNH-LVGAIP-SFNFVFSLRILRLGSN-QLSGSLPVALLQESSMMLSELDLSLN 297 (832)
Q Consensus 223 ~--l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~l~~L~~L~L~~N-~l~~~~p~~~~~~~~~~L~~L~L~~N 297 (832)
. ++...... ....+++|+.|++++|. +++... .+..+++|++|+|++| .+++.....+ ..+++|+.|+++++
T Consensus 159 ~~~i~~~~l~~-l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L--~~~~~L~~L~l~~~ 235 (284)
T d2astb2 159 RKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL--GEIPTLKTLQVFGI 235 (284)
T ss_dssp GGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG--GGCTTCCEEECTTS
T ss_pred ccccccccccc-cccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHH--hcCCCCCEEeeeCC
Confidence 2 33221111 02457788888888764 554333 6777888888888884 5665544444 45678888888776
Q ss_pred CCCCccCccCCCCCCEEEecCCeecccCCCCCCC
Q 003307 298 QLEGPVGSITSATLKKVNLSSNKLSGSLPARVGH 331 (832)
Q Consensus 298 ~l~~~~~~~~~~~L~~L~L~~N~l~~~~p~~l~~ 331 (832)
++...-......+..|.+..+++++..+..+++
T Consensus 236 -~~d~~l~~l~~~lp~L~i~~~~ls~~~~~~~~~ 268 (284)
T d2astb2 236 -VPDGTLQLLKEALPHLQINCSHFTTIARPTIGN 268 (284)
T ss_dssp -SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred -CCHHHHHHHHHhCccccccCccCCCCCCCccCc
Confidence 221110111123444555666666555544443
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.51 E-value=9.8e-15 Score=150.17 Aligned_cols=91 Identities=27% Similarity=0.367 Sum_probs=78.9
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|+||+||+|+.. +|+.||||+++.... ..++|.+|+++|++++|||||+++|+|.+.+. .++|||||++|
T Consensus 22 ~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~-~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~--~~iv~E~~~~g 98 (287)
T d1opja_ 22 KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP--FYIITEFMTYG 98 (287)
T ss_dssp EEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS--CEEEEECCTTC
T ss_pred eeEEeeCCCeEEEEEEECCCCeEEEEEEECCccc-hHHHHHHHHHHHHhCCCCCEecCCccEeeCCe--eEEEeecccCc
Confidence 568999999999999985 789999999965433 45789999999999999999999999988777 99999999999
Q ss_pred CHHHHHhcC--CCcccc
Q 003307 816 SLAVYLQGK--GLVLWF 830 (832)
Q Consensus 816 sL~~~l~~~--~~l~w~ 830 (832)
+|.++++.. ..++|.
T Consensus 99 ~l~~~l~~~~~~~~~~~ 115 (287)
T d1opja_ 99 NLLDYLRECNRQEVSAV 115 (287)
T ss_dssp BHHHHHHHSCTTTSCHH
T ss_pred chHHHhhhccccchHHH
Confidence 999999764 456653
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.51 E-value=1.8e-14 Score=149.02 Aligned_cols=92 Identities=26% Similarity=0.538 Sum_probs=77.0
Q ss_pred cCeeeeccCceEEEEEEC-CCC---EEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGS---ILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~---~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.++||+|+||+||+|+.. +|+ .||||++... .....++|.+|+++|++++|||||+++|+|...+. .++||||
T Consensus 31 ~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~--~~iv~Ey 108 (299)
T d1jpaa_ 31 EQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTP--VMIITEF 108 (299)
T ss_dssp EEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS--CEEEEEC
T ss_pred eeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCE--EEEEEEe
Confidence 578999999999999974 343 6899998653 34456789999999999999999999999988777 9999999
Q ss_pred CCCCCHHHHHhcC-CCcccc
Q 003307 812 INAQSLAVYLQGK-GLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~-~~l~w~ 830 (832)
|++|+|.++++.. +.++|.
T Consensus 109 ~~~g~L~~~~~~~~~~l~~~ 128 (299)
T d1jpaa_ 109 MENGSLDSFLRQNDGQFTVI 128 (299)
T ss_dssp CTTEEHHHHHHTTTTCSCHH
T ss_pred cCCCcceeeeccccCCCCHH
Confidence 9999999998874 457774
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.50 E-value=1.2e-14 Score=150.81 Aligned_cols=92 Identities=21% Similarity=0.287 Sum_probs=76.1
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||+||+|+.. +|+.||||++.... ....+.|.+|++++++++|||||++++++.+.+. .++|||||++
T Consensus 14 ~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~--~~lvmE~~~g 91 (307)
T d1a06a_ 14 RDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGH--LYLIMQLVSG 91 (307)
T ss_dssp EEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSE--EEEEECCCCS
T ss_pred EEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE--EEEEEeccCC
Confidence 678999999999999974 79999999986432 2234568899999999999999999999998776 9999999999
Q ss_pred CCHHHHHhcCCCcccc
Q 003307 815 QSLAVYLQGKGLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~~~l~w~ 830 (832)
|+|.++|..++.+++.
T Consensus 92 g~L~~~l~~~~~l~e~ 107 (307)
T d1a06a_ 92 GELFDRIVEKGFYTER 107 (307)
T ss_dssp CBHHHHHHTCSCCCHH
T ss_pred CcHHHhhhcccCCCHH
Confidence 9999999988877764
|
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1e-14 Score=148.87 Aligned_cols=90 Identities=21% Similarity=0.332 Sum_probs=76.2
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
.+.||+|+||.||+|++.+++.||||+++... ...++|.+|++++++++|||||+++|+|.. +. .++|||||++|+
T Consensus 18 ~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~-~~--~~iv~Ey~~~g~ 93 (272)
T d1qpca_ 18 VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EP--IYIITEYMENGS 93 (272)
T ss_dssp EEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SS--CEEEEECCTTCB
T ss_pred eEEEecCCCcEEEEEEECCCCEEEEEEEccCc-CCHHHHHHHHHHHHhCCCCCEeEEEeeecc-CC--eEEEEEeCCCCc
Confidence 56799999999999999888899999996543 245789999999999999999999998864 44 799999999999
Q ss_pred HHHHHhcCC--Ccccc
Q 003307 817 LAVYLQGKG--LVLWF 830 (832)
Q Consensus 817 L~~~l~~~~--~l~w~ 830 (832)
|.++++... .++|.
T Consensus 94 L~~~~~~~~~~~l~~~ 109 (272)
T d1qpca_ 94 LVDFLKTPSGIKLTIN 109 (272)
T ss_dssp HHHHTTSHHHHTCCHH
T ss_pred HHHHHhhcCCCCCCHH
Confidence 999876543 46664
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=6.3e-15 Score=149.94 Aligned_cols=92 Identities=14% Similarity=0.086 Sum_probs=78.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||+||+|+. .+|+.||||+++... ....+.|.+|++++++++|||||++++++.+.+. .++|||||++
T Consensus 10 ~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~--~~ivmEy~~g 87 (271)
T d1nvra_ 10 VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNI--QYLFLEYCSG 87 (271)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTE--EEEEEECCTT
T ss_pred EEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCce--eEEEEeccCC
Confidence 56899999999999997 489999999986432 2334679999999999999999999999998777 9999999999
Q ss_pred CCHHHHHhcCCCcccc
Q 003307 815 QSLAVYLQGKGLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~~~l~w~ 830 (832)
|+|+++|+.++.+++.
T Consensus 88 g~L~~~l~~~~~l~e~ 103 (271)
T d1nvra_ 88 GELFDRIEPDIGMPEP 103 (271)
T ss_dssp EEGGGGSBTTTBCCHH
T ss_pred CcHHHHHhcCCCCCHH
Confidence 9999999887777764
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.5e-14 Score=146.70 Aligned_cols=89 Identities=19% Similarity=0.304 Sum_probs=74.6
Q ss_pred eeeeccCceEEEEEEC---CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 739 VIGRSCHGTLYKATLD---SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 739 ~iG~G~~g~Vy~~~~~---~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.||+|+||.||+|++. ++..||||+++.. .....++|.+|+++|++++|||||+++|+|.. +. .++|||||++
T Consensus 16 ~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~--~~lvmE~~~~ 92 (285)
T d1u59a_ 16 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EA--LMLVMEMAGG 92 (285)
T ss_dssp EEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-SS--EEEEEECCTT
T ss_pred EEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-Ce--EEEEEEeCCC
Confidence 3999999999999863 4568999999654 33446789999999999999999999999975 34 8999999999
Q ss_pred CCHHHHHhcC-CCcccc
Q 003307 815 QSLAVYLQGK-GLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~-~~l~w~ 830 (832)
|+|.++++.. +.++|.
T Consensus 93 g~L~~~l~~~~~~l~~~ 109 (285)
T d1u59a_ 93 GPLHKFLVGKREEIPVS 109 (285)
T ss_dssp EEHHHHHTTCTTTSCHH
T ss_pred CcHHHHhhccccCCCHH
Confidence 9999998754 467764
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.6e-14 Score=148.32 Aligned_cols=92 Identities=15% Similarity=0.282 Sum_probs=79.8
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
...||+|+||.||+|+. .+|+.||||+++.......+.|.+|++++++++|||||++++++.+.+. .++|||||++|
T Consensus 17 ~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~--~~lvmEy~~~g 94 (288)
T d2jfla1 17 IGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENN--LWILIEFCAGG 94 (288)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTE--EEEEEECCTTE
T ss_pred eEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCe--EEEEEecCCCC
Confidence 45799999999999997 4899999999976555556789999999999999999999999998777 99999999999
Q ss_pred CHHHHHhc-CCCcccc
Q 003307 816 SLAVYLQG-KGLVLWF 830 (832)
Q Consensus 816 sL~~~l~~-~~~l~w~ 830 (832)
+|.+++.+ .+.+++.
T Consensus 95 ~L~~~~~~~~~~l~e~ 110 (288)
T d2jfla1 95 AVDAVMLELERPLTES 110 (288)
T ss_dssp EHHHHHHHHTSCCCHH
T ss_pred cHHHHHHhcCCCCCHH
Confidence 99999765 4556653
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=3.3e-14 Score=144.53 Aligned_cols=94 Identities=19% Similarity=0.298 Sum_probs=78.2
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECC--CCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGP--KEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~--~~~~~~lv~e~ 811 (832)
+..||+|+||+||+|+.. +|+.||||++... .....+.|.+|+++|++++|||||+++++|... +....++||||
T Consensus 14 ~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivmE~ 93 (270)
T d1t4ha_ 14 DIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTEL 93 (270)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEEC
T ss_pred eeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEEeC
Confidence 456999999999999974 7899999998543 334456799999999999999999999998652 22247999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
|++|+|.++++..+.++|.
T Consensus 94 ~~~g~L~~~l~~~~~~~~~ 112 (270)
T d1t4ha_ 94 MTSGTLKTYLKRFKVMKIK 112 (270)
T ss_dssp CCSCBHHHHHHHHSSCCHH
T ss_pred CCCCcHHHHHhccccccHH
Confidence 9999999999887777664
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=3.7e-14 Score=144.16 Aligned_cols=94 Identities=23% Similarity=0.273 Sum_probs=75.8
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|+||+||+|+. .+|+.||||.++.. .....+.|.+|++++++++|||||++++++.+......++|||||+
T Consensus 9 ~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~ivmEy~~ 88 (269)
T d2java1 9 LYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCE 88 (269)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEEEECCT
T ss_pred eEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEEEecCC
Confidence 56899999999999997 48999999998643 2334567999999999999999999999997644334899999999
Q ss_pred CCCHHHHHhc----CCCcccc
Q 003307 814 AQSLAVYLQG----KGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~----~~~l~w~ 830 (832)
+|+|.++++. ++.++|.
T Consensus 89 ~g~L~~~i~~~~~~~~~l~e~ 109 (269)
T d2java1 89 GGDLASVITKGTKERQYLDEE 109 (269)
T ss_dssp TEEHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHhccccCCCCCHH
Confidence 9999999863 3456553
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.5e-14 Score=151.60 Aligned_cols=92 Identities=20% Similarity=0.286 Sum_probs=80.9
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||+||+|+. .+|+.||||+++.. .....+.+.+|+++|++++|||||+++++|.+.+. .++|||||++
T Consensus 11 ~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~--~~iVmEy~~g 88 (322)
T d1s9ja_ 11 ISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGE--ISICMEHMDG 88 (322)
T ss_dssp EEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSE--EEEEEECCTT
T ss_pred EEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE--EEEEEEcCCC
Confidence 56799999999999997 48999999998643 33345779999999999999999999999998777 9999999999
Q ss_pred CCHHHHHhcCCCcccc
Q 003307 815 QSLAVYLQGKGLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~~~l~w~ 830 (832)
|+|++++++.+.++|.
T Consensus 89 g~L~~~l~~~~~l~~~ 104 (322)
T d1s9ja_ 89 GSLDQVLKKAGRIPEQ 104 (322)
T ss_dssp EEHHHHHHHHSSCCHH
T ss_pred CcHHHHHhhcCCCCHH
Confidence 9999999987777764
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Probab=99.48 E-value=3.5e-14 Score=149.94 Aligned_cols=92 Identities=18% Similarity=0.294 Sum_probs=80.8
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|+||.||+|+. .+|+.||||++........+.+.+|++++++++|||||++++++.+.+. .++|||||++|
T Consensus 31 ~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~--~~ivmE~~~gg 108 (350)
T d1koaa2 31 HEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNE--MVMIYEFMSGG 108 (350)
T ss_dssp EEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTE--EEEEECCCCSC
T ss_pred EEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE--EEEEEEcCCCC
Confidence 56899999999999997 4899999999976665566789999999999999999999999998776 99999999999
Q ss_pred CHHHHHhcC-CCcccc
Q 003307 816 SLAVYLQGK-GLVLWF 830 (832)
Q Consensus 816 sL~~~l~~~-~~l~w~ 830 (832)
+|.+++..+ +.++|.
T Consensus 109 ~L~~~l~~~~~~l~e~ 124 (350)
T d1koaa2 109 ELFEKVADEHNKMSED 124 (350)
T ss_dssp BHHHHHTCTTSCBCHH
T ss_pred CHHHHHHhhcCCCCHH
Confidence 999999654 456653
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=3.6e-14 Score=145.94 Aligned_cols=90 Identities=23% Similarity=0.300 Sum_probs=77.8
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|+||+||+|+. .+|+.||||+++.......+.+.+|++++++++|||||++++++.+.+. .++|||||++|
T Consensus 25 ~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~--~~ivmEy~~gg 102 (293)
T d1yhwa1 25 FEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDE--LWVVMEYLAGG 102 (293)
T ss_dssp CEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTE--EEEEEECCTTC
T ss_pred EEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCE--EEEEEEecCCC
Confidence 56799999999999997 5899999999865444446779999999999999999999999998877 99999999999
Q ss_pred CHHHHHhcCCCccc
Q 003307 816 SLAVYLQGKGLVLW 829 (832)
Q Consensus 816 sL~~~l~~~~~l~w 829 (832)
+|.++++++ .+++
T Consensus 103 ~L~~~~~~~-~l~~ 115 (293)
T d1yhwa1 103 SLTDVVTET-CMDE 115 (293)
T ss_dssp BHHHHHHHS-CCCH
T ss_pred cHHHHhhcc-CCCH
Confidence 999988764 3544
|
| >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Carboxyl-terminal src kinase (csk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.5e-14 Score=146.34 Aligned_cols=89 Identities=24% Similarity=0.390 Sum_probs=74.4
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECC-CCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGP-KEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~-~~~~~~lv~e~~~~G 815 (832)
.+.||+|+||.||+|++ .|..||||+++... ..++|.+|++++++++|||||+++|+|... +. .++||||+++|
T Consensus 12 ~~~lG~G~fg~Vy~~~~-~~~~vAvK~i~~~~--~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~--~~lv~ey~~~g 86 (262)
T d1byga_ 12 LQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGG--LYIVTEYMAKG 86 (262)
T ss_dssp EEEEEECSSCEEEEEEE-TTEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--C--CEEEECCCTTE
T ss_pred eEEEecCCCeEEEEEEE-CCeEEEEEEECcHH--HHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCc--EEEEEeccCCC
Confidence 57799999999999998 47899999996543 346799999999999999999999999654 34 79999999999
Q ss_pred CHHHHHhcCC--Ccccc
Q 003307 816 SLAVYLQGKG--LVLWF 830 (832)
Q Consensus 816 sL~~~l~~~~--~l~w~ 830 (832)
+|.++|+.++ .++|.
T Consensus 87 ~L~~~l~~~~~~~l~~~ 103 (262)
T d1byga_ 87 SLVDYLRSRGRSVLGGD 103 (262)
T ss_dssp EHHHHHHHHHHHHCCHH
T ss_pred CHHHHHHhcCCCCCCHH
Confidence 9999997643 36664
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=3.9e-14 Score=145.10 Aligned_cols=90 Identities=21% Similarity=0.430 Sum_probs=77.1
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQS 816 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~Gs 816 (832)
.+.||+|+||+||+|+..+++.||||+++... ...+.|.+|+.++++++|||||+++|+|.. +. .++|||||++|+
T Consensus 22 ~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~-~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~-~~--~~lv~Ey~~~g~ 97 (285)
T d1fmka3 22 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EP--IYIVTEYMSKGS 97 (285)
T ss_dssp EEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SS--CEEEECCCTTCB
T ss_pred eeEEeeCCCeEEEEEEECCCCEEEEEEECccc-CCHHHHHHHHHHHHhcccCCEeEEEEEEec-CC--eEEEEEecCCCc
Confidence 67899999999999999888889999996543 345789999999999999999999999854 44 799999999999
Q ss_pred HHHHHhcC--CCcccc
Q 003307 817 LAVYLQGK--GLVLWF 830 (832)
Q Consensus 817 L~~~l~~~--~~l~w~ 830 (832)
|.++++.. +.++|.
T Consensus 98 l~~~~~~~~~~~l~~~ 113 (285)
T d1fmka3 98 LLDFLKGETGKYLRLP 113 (285)
T ss_dssp HHHHHSHHHHTTCCHH
T ss_pred hhhhhhhcccccchHH
Confidence 99998753 457774
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=2.7e-14 Score=146.61 Aligned_cols=92 Identities=17% Similarity=0.180 Sum_probs=80.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||+||+|+. .+|+.||||+++... ....+.|.+|++++++++|||||++++++.+.+. .++|||||
T Consensus 13 ~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~--~~ivmEy~ 90 (288)
T d1uu3a_ 13 GKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEK--LYFGLSYA 90 (288)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSE--EEEEECCC
T ss_pred EEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCE--EEEEEEcc
Confidence 67899999999999997 489999999985421 2234679999999999999999999999998776 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.++++..+.+++.
T Consensus 91 ~gg~L~~~~~~~~~l~e~ 108 (288)
T d1uu3a_ 91 KNGELLKYIRKIGSFDET 108 (288)
T ss_dssp TTEEHHHHHHHHSSCCHH
T ss_pred CCCCHHHhhhccCCCCHH
Confidence 999999999988877764
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=3.4e-14 Score=132.30 Aligned_cols=89 Identities=21% Similarity=0.146 Sum_probs=76.9
Q ss_pred CCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCC
Q 003307 107 TDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGS 186 (832)
Q Consensus 107 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~ 186 (832)
+.+.++.+|++|||++|+|+.+ +..+..+++|+.|+|++|.|+.. +.|..+++|++|+|++|+++...+..+..+++
T Consensus 12 ~~~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~ 88 (162)
T d1a9na_ 12 AQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 88 (162)
T ss_dssp CEEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred HhccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccc
Confidence 4567788899999999999865 66678899999999999999954 45889999999999999998877777888999
Q ss_pred CCEEECccCcCc
Q 003307 187 VVHVDLSNNQFS 198 (832)
Q Consensus 187 L~~L~Ls~N~l~ 198 (832)
|++|++++|+++
T Consensus 89 L~~L~L~~N~i~ 100 (162)
T d1a9na_ 89 LTELILTNNSLV 100 (162)
T ss_dssp CCEEECCSCCCC
T ss_pred cccceecccccc
Confidence 999999999887
|
| >d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: gamma-subunit of glycogen phosphorylase kinase (Phk) species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.45 E-value=5.9e-14 Score=143.22 Aligned_cols=92 Identities=20% Similarity=0.227 Sum_probs=79.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---------hhhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---------AKGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEK 805 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---------~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~ 805 (832)
.+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|++++++++ |||||++++++.+.+. .
T Consensus 8 ~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~--~ 85 (277)
T d1phka_ 8 KEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTF--F 85 (277)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSE--E
T ss_pred ceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccCcc--e
Confidence 67899999999999997 589999999985431 112346889999999997 9999999999998777 9
Q ss_pred EEEEecCCCCCHHHHHhcCCCcccc
Q 003307 806 LVISNYINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 806 ~lv~e~~~~GsL~~~l~~~~~l~w~ 830 (832)
++|||||++|+|.++|+.++.++|.
T Consensus 86 ~ivmE~~~~g~L~~~l~~~~~l~e~ 110 (277)
T d1phka_ 86 FLVFDLMKKGELFDYLTEKVTLSEK 110 (277)
T ss_dssp EEEEECCTTCBHHHHHHHHSSCCHH
T ss_pred EEEEEcCCCchHHHHHHhcCCCCHH
Confidence 9999999999999999988888774
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Probab=99.45 E-value=9.2e-14 Score=146.79 Aligned_cols=92 Identities=15% Similarity=0.273 Sum_probs=80.1
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|+||.||+|+. .+|+.||||+++.......+.+.+|++++++++|||||++++++.+.+. .++|||||++|
T Consensus 34 ~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~--~~ivmE~~~gg 111 (352)
T d1koba_ 34 LEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYE--MVLILEFLSGG 111 (352)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSE--EEEEEECCCCC
T ss_pred EEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE--EEEEEEcCCCC
Confidence 56899999999999997 4899999999976655556789999999999999999999999997776 99999999999
Q ss_pred CHHHHHhcCC-Ccccc
Q 003307 816 SLAVYLQGKG-LVLWF 830 (832)
Q Consensus 816 sL~~~l~~~~-~l~w~ 830 (832)
+|.+++..++ ++++.
T Consensus 112 ~L~~~~~~~~~~l~e~ 127 (352)
T d1koba_ 112 ELFDRIAAEDYKMSEA 127 (352)
T ss_dssp BHHHHTTCTTCCBCHH
T ss_pred hHHHHHHhcCCCCCHH
Confidence 9999877554 46653
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=9.3e-14 Score=145.09 Aligned_cols=91 Identities=16% Similarity=0.172 Sum_probs=78.8
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCCC
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINAQ 815 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~G 815 (832)
.+.||+|+||+||+|+.. +|+.||||.++.... ....+.+|+++|.+++|||||++++++.+.+. .++|||||++|
T Consensus 10 ~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~-~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~--~~lvmE~~~gg 86 (321)
T d1tkia_ 10 AEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGT-DQVLVKKEISILNIARHRNILHLHESFESMEE--LVMIFEFISGL 86 (321)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEECCCTH-HHHHHHHHHHHHHHSCCTTBCCEEEEEEETTE--EEEEECCCCCC
T ss_pred EEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcc-cHHHHHHHHHHHHhCCCCCCCeEEEEEEECCE--EEEEEecCCCC
Confidence 568999999999999974 899999999965433 34568899999999999999999999998777 99999999999
Q ss_pred CHHHHHhcCC-Ccccc
Q 003307 816 SLAVYLQGKG-LVLWF 830 (832)
Q Consensus 816 sL~~~l~~~~-~l~w~ 830 (832)
+|.++|+..+ .+++.
T Consensus 87 ~L~~~i~~~~~~l~e~ 102 (321)
T d1tkia_ 87 DIFERINTSAFELNER 102 (321)
T ss_dssp BHHHHHTSSSCCCCHH
T ss_pred cHHHHHHhcCCCCCHH
Confidence 9999998665 56653
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.44 E-value=1.5e-13 Score=121.55 Aligned_cols=78 Identities=22% Similarity=0.270 Sum_probs=60.1
Q ss_pred CEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccC
Q 003307 116 EFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNN 195 (832)
Q Consensus 116 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N 195 (832)
|+|||++|+|+.. + .+.++++|++|++++|+|+ .+|+.|+.+++|++|++++|.|++. + .++.+++|++|++++|
T Consensus 1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence 5788888888744 3 4788888888888888887 4566788888888888888888754 2 4777778888888888
Q ss_pred cCc
Q 003307 196 QFS 198 (832)
Q Consensus 196 ~l~ 198 (832)
+++
T Consensus 76 ~i~ 78 (124)
T d1dcea3 76 RLQ 78 (124)
T ss_dssp CCC
T ss_pred ccC
Confidence 776
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=6.6e-14 Score=142.86 Aligned_cols=89 Identities=24% Similarity=0.305 Sum_probs=74.9
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|++. ..||||+++.. .....+.|.+|++++++++|||||+++|+|.. +. .++|||||++
T Consensus 13 ~~~lG~G~fg~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~-~~--~~lv~Ey~~~ 87 (276)
T d1uwha_ 13 GQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA-PQ--LAIVTQWCEG 87 (276)
T ss_dssp CSEEEECSSCEEEEEESS--SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SS--CEEEEECCCE
T ss_pred EEEEeeCCCcEEEEEEEC--CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEec-cE--EEEEEecCCC
Confidence 678999999999999874 36999998543 33456789999999999999999999999864 34 7999999999
Q ss_pred CCHHHHHhcC-CCcccc
Q 003307 815 QSLAVYLQGK-GLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~-~~l~w~ 830 (832)
|+|.++|+.. ..++|.
T Consensus 88 g~L~~~l~~~~~~~~~~ 104 (276)
T d1uwha_ 88 SSLYHHLHIIETKFEMI 104 (276)
T ss_dssp EEHHHHHHTSCCCCCHH
T ss_pred CCHHHHHhhccCCCCHH
Confidence 9999999865 457764
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.44 E-value=5.5e-14 Score=145.80 Aligned_cols=92 Identities=18% Similarity=0.307 Sum_probs=79.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
-+.||+|+||.||+|+. .+|+.||||+++... ....+.|.+|+++|++++|||||+++++|.+.+. .++|||||
T Consensus 20 l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~--~~iv~E~~ 97 (309)
T d1u5ra_ 20 LREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHT--AWLVMEYC 97 (309)
T ss_dssp EEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTE--EEEEEECC
T ss_pred eEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCE--EEEEEEec
Confidence 45799999999999997 589999999986432 2234679999999999999999999999998777 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|..++..++.++|.
T Consensus 98 ~~g~l~~~~~~~~~l~e~ 115 (309)
T d1u5ra_ 98 LGSASDLLEVHKKPLQEV 115 (309)
T ss_dssp SEEHHHHHHHHTSCCCHH
T ss_pred CCCchHHHHHhCCCCCHH
Confidence 999999888877778764
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=1e-13 Score=144.22 Aligned_cols=86 Identities=27% Similarity=0.419 Sum_probs=71.5
Q ss_pred cCeeeeccCceEEEEEEC-CCC--EEEEEEeccC-ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGS--ILAVKRLREG-IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~--~vAvK~l~~~-~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|+||.||+|++. +|. .||||+++.. .....++|.+|+++|+++ +|||||+++|+|...+. .++||||
T Consensus 15 ~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~--~~iV~ey 92 (309)
T d1fvra_ 15 QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGY--LYLAIEY 92 (309)
T ss_dssp EEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTE--EEEEECC
T ss_pred EEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCe--eEEEEEe
Confidence 678999999999999974 555 4788887543 333456799999999998 79999999999998776 9999999
Q ss_pred CCCCCHHHHHhcC
Q 003307 812 INAQSLAVYLQGK 824 (832)
Q Consensus 812 ~~~GsL~~~l~~~ 824 (832)
+++|+|.++|+..
T Consensus 93 ~~~g~L~~~l~~~ 105 (309)
T d1fvra_ 93 APHGNLLDFLRKS 105 (309)
T ss_dssp CTTCBHHHHHHTT
T ss_pred cCCCcHHHHHhhc
Confidence 9999999999865
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.42 E-value=1.3e-13 Score=143.48 Aligned_cols=91 Identities=20% Similarity=0.279 Sum_probs=79.2
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|++++++++|||||++++++.+.+. .++|||||
T Consensus 9 ~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~--~~ivmE~~ 86 (316)
T d1fota_ 9 LRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQ--IFMIMDYI 86 (316)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSE--EEEEECCC
T ss_pred EEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCe--eeeEeeec
Confidence 56899999999999997 489999999985421 2235679999999999999999999999998777 99999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
++|+|.+++..+..+++
T Consensus 87 ~gg~l~~~~~~~~~~~~ 103 (316)
T d1fota_ 87 EGGELFSLLRKSQRFPN 103 (316)
T ss_dssp CSCBHHHHHHHTSSCCH
T ss_pred CCccccccccccccccc
Confidence 99999999988876664
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.7e-13 Score=140.69 Aligned_cols=92 Identities=28% Similarity=0.498 Sum_probs=77.2
Q ss_pred cCeeeeccCceEEEEEECC-C----CEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATLDS-G----SILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~-g----~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.++||+|+||.||+|++.. + ..||||+++.. ......+|.+|++++++++|||||+++|+|...+. .++|||
T Consensus 12 ~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~--~~~v~e 89 (283)
T d1mqba_ 12 QKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKP--MMIITE 89 (283)
T ss_dssp EEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS--EEEEEE
T ss_pred eeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCc--eEEEEE
Confidence 6789999999999999742 2 47999999654 33445679999999999999999999999988777 999999
Q ss_pred cCCCCCHHHHHhcC-CCcccc
Q 003307 811 YINAQSLAVYLQGK-GLVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~-~~l~w~ 830 (832)
||++|++.+++... +.++|.
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~~ 110 (283)
T d1mqba_ 90 YMENGALDKFLREKDGEFSVL 110 (283)
T ss_dssp CCTTEEHHHHHHHTTTCSCHH
T ss_pred ecccCcchhhhhcccccccHH
Confidence 99999999988755 457664
|
| >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Hepatocyte growth factor receptor, c-MET species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=2.1e-13 Score=141.63 Aligned_cols=88 Identities=30% Similarity=0.428 Sum_probs=73.3
Q ss_pred cCeeeeccCceEEEEEECC--C--CEEEEEEecc-CChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLDS--G--SILAVKRLRE-GIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~--g--~~vAvK~l~~-~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
+++||+|+||+||+|++.+ + ..||||+++. ......++|.+|+++|++++|||||+++|+|...+. ..++||||
T Consensus 32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~-~~~lv~E~ 110 (311)
T d1r0pa_ 32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEG-SPLVVLPY 110 (311)
T ss_dssp EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTT-EEEEEEEC
T ss_pred ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCC-ceEEEEEE
Confidence 5689999999999999742 2 3689999964 344456789999999999999999999999876542 38999999
Q ss_pred CCCCCHHHHHhcCC
Q 003307 812 INAQSLAVYLQGKG 825 (832)
Q Consensus 812 ~~~GsL~~~l~~~~ 825 (832)
|++|+|.++++.+.
T Consensus 111 ~~~g~l~~~~~~~~ 124 (311)
T d1r0pa_ 111 MKHGDLRNFIRNET 124 (311)
T ss_dssp CTTCBHHHHHHCTT
T ss_pred eecCchhhhhcccc
Confidence 99999999998654
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.5e-13 Score=141.10 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=35.6
Q ss_pred cccEEEcCCC-cCCCCCcccccCCCCCCEEEccCC-cCCCCcccccCCCCCCCEEEccCC
Q 003307 355 YVEDIHLSSN-FLTGMVPNQTSQFLRLTSFKVSNN-SLEGDLPAVLGTYPELKVIDLSLN 412 (832)
Q Consensus 355 ~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N 412 (832)
+|++|++++| .+++.....+..+++|++|+|+++ .+++.....++.+++|+.|+++++
T Consensus 176 ~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 176 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 5666666654 355445555666667777777763 455555555666677777777665
|
| >d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Pkb kinase (Akt-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.8e-13 Score=143.54 Aligned_cols=92 Identities=20% Similarity=0.252 Sum_probs=80.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.++||+|+||+||+|+. .+|+.||||+++... ....+.+.+|+++|++++|||||++++++.+.+. .++|||||
T Consensus 10 ~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~--~~iv~ey~ 87 (337)
T d1o6la_ 10 LKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDR--LCFVMEYA 87 (337)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSE--EEEEEECC
T ss_pred EEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccc--cccceecc
Confidence 57899999999999997 589999999996431 2235678999999999999999999999998877 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.++++..+.+++.
T Consensus 88 ~gg~L~~~~~~~~~~~e~ 105 (337)
T d1o6la_ 88 NGGELFFHLSRERVFTEE 105 (337)
T ss_dssp TTCBHHHHHHHHSCCCHH
T ss_pred CCCchhhhhhcccCCcHH
Confidence 999999999987777653
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=2.8e-13 Score=140.37 Aligned_cols=91 Identities=20% Similarity=0.199 Sum_probs=70.7
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC--ceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE--HEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~--~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|++ +|+.||||+++.... ....+..|+..+.+++|||||+++|+|...+. ...++|||||++
T Consensus 8 ~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~~~-~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~Ey~~~ 85 (303)
T d1vjya_ 8 QESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEH 85 (303)
T ss_dssp EEEEECCSSSEEEEEEE-TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTT
T ss_pred EEEEeeCCCeEEEEEEE-CCEEEEEEEECccch-hHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEEecccC
Confidence 56799999999999997 689999999964322 12223345555568899999999999986542 247999999999
Q ss_pred CCHHHHHhcCCCcccc
Q 003307 815 QSLAVYLQGKGLVLWF 830 (832)
Q Consensus 815 GsL~~~l~~~~~l~w~ 830 (832)
|+|.++|++. .++|.
T Consensus 86 g~L~~~l~~~-~l~~~ 100 (303)
T d1vjya_ 86 GSLFDYLNRY-TVTVE 100 (303)
T ss_dssp CBHHHHHHHC-CBCHH
T ss_pred CCHHHHHhcC-CCCHH
Confidence 9999999875 46664
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.36 E-value=6.8e-14 Score=148.48 Aligned_cols=216 Identities=18% Similarity=0.208 Sum_probs=114.9
Q ss_pred cccCCCCCCEEEcCCCCCccc----CC-CCCCCCCCCEEECCCCCCCcc----------CcccccCCCCCCEEEcccccc
Q 003307 85 TIIGLKMLCNVSVSNNQLMGN----IT-DIGSIQSLEFLDLSHNLFHGL----------IPSGIVSLKNLMLLNISSNSF 149 (832)
Q Consensus 85 ~~~~l~~L~~L~Ls~n~l~~~----~~-~~~~l~~L~~L~Ls~N~l~~~----------~p~~~~~l~~L~~L~Ls~N~l 149 (832)
.+.....|+.|+|++|.+... +. .+...++|+.|+++++.+... +...+..+++|++|+|++|.+
T Consensus 26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i 105 (344)
T d2ca6a1 26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 105 (344)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence 455667788888888777442 12 466677888888877654322 123345567777777777777
Q ss_pred ccc----CCCCCCCCCCCCEeeCcCCCCCCccchh-------------hhcCCCCCEEECccCcCccccCCCCC-CCCCC
Q 003307 150 EGT----FPSGFGGLGKLKYLDLRANRFGGDIMHL-------------LSQLGSVVHVDLSNNQFSGSLDLGLG-DSSFI 211 (832)
Q Consensus 150 ~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~~~-------------l~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~l 211 (832)
+.. +...+..+++|++|++++|.+....... ....+.|+.|++++|.++...-..+. .+...
T Consensus 106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~ 185 (344)
T d2ca6a1 106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 185 (344)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred ccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhh
Confidence 643 2223345677777777777664211111 12455677777777766521100000 01123
Q ss_pred CCccEEECCCCCCeeccC---CCCCCCCCCCcCEEEccCCccccc----C-CCccccccccEEEccccCCCCCCChhhhh
Q 003307 212 SSIQYLNISENSLVGELF---PHDGMPYFDNLEVFDASNNHLVGA----I-PSFNFVFSLRILRLGSNQLSGSLPVALLQ 283 (832)
Q Consensus 212 ~~L~~L~L~~N~l~~~~~---~~~~~~~l~~L~~L~Ls~N~l~~~----~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 283 (832)
+.|+.|+|++|.++..-. -...+..+++|+.|++++|.++.. + ..+..+++|++|+|++|.|++.-...+..
T Consensus 186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~ 265 (344)
T d2ca6a1 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 265 (344)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHH
Confidence 556666666666643200 011145566666666666665432 1 13455666666666666665332222211
Q ss_pred ----hCCCCCCEEECCCCCCC
Q 003307 284 ----ESSMMLSELDLSLNQLE 300 (832)
Q Consensus 284 ----~~~~~L~~L~L~~N~l~ 300 (832)
.....|++|++++|+++
T Consensus 266 ~l~~~~~~~L~~L~ls~N~i~ 286 (344)
T d2ca6a1 266 AFSKLENIGLQTLRLQYNEIE 286 (344)
T ss_dssp HHHTCSSCCCCEEECCSSCCB
T ss_pred HhhhccCCCCCEEECCCCcCC
Confidence 12234555555555554
|
| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Insulin-like growth factor 1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=4.8e-13 Score=138.94 Aligned_cols=86 Identities=21% Similarity=0.357 Sum_probs=74.3
Q ss_pred cCeeeeccCceEEEEEEC------CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
...||+|+||.||+|++. +++.||||+++.. .......|.+|++++.+++|||||+++|+|...+. .++||
T Consensus 25 ~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~--~~lv~ 102 (308)
T d1p4oa_ 25 SRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQP--TLVIM 102 (308)
T ss_dssp EEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSS--CEEEE
T ss_pred eeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCCc--eeEEE
Confidence 678999999999999862 3578999999643 34445679999999999999999999999987777 99999
Q ss_pred ecCCCCCHHHHHhcC
Q 003307 810 NYINAQSLAVYLQGK 824 (832)
Q Consensus 810 e~~~~GsL~~~l~~~ 824 (832)
|||++|+|.++++..
T Consensus 103 e~~~~g~l~~~~~~~ 117 (308)
T d1p4oa_ 103 ELMTRGDLKSYLRSL 117 (308)
T ss_dssp ECCTTCBHHHHHHHH
T ss_pred eecCCCCHHHHHHhc
Confidence 999999999998753
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.36 E-value=5.2e-13 Score=136.67 Aligned_cols=94 Identities=18% Similarity=0.195 Sum_probs=79.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC--ceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE--HEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~--~~~~lv~e 810 (832)
.+.||+|+||.||+|+. .+|+.||||+++... ....+.|.+|++++++++|||||++++++...+. ...++|||
T Consensus 12 ~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~~lvmE 91 (277)
T d1o6ya_ 12 GEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVME 91 (277)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEEEEEEE
T ss_pred eEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCceEEEEEE
Confidence 56899999999999997 589999999996432 2335679999999999999999999999876432 23789999
Q ss_pred cCCCCCHHHHHhcCCCcccc
Q 003307 811 YINAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~~l~w~ 830 (832)
||++|+|.+++...+.++|.
T Consensus 92 ~~~g~~L~~~~~~~~~l~~~ 111 (277)
T d1o6ya_ 92 YVDGVTLRDIVHTEGPMTPK 111 (277)
T ss_dssp CCCEEEHHHHHHHHCSCCHH
T ss_pred CCCCCEehhhhcccCCCCHH
Confidence 99999999999888888774
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.36 E-value=7.9e-13 Score=136.94 Aligned_cols=87 Identities=25% Similarity=0.394 Sum_probs=75.6
Q ss_pred cCeeeeccCceEEEEEEC------CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
.+.||+|+||+||+|+.. +++.||||+++... ....++|.+|++++++++||||++++++|...+. .++||
T Consensus 18 ~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~--~~~v~ 95 (301)
T d1lufa_ 18 VRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKP--MCLLF 95 (301)
T ss_dssp EEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS--CEEEE
T ss_pred eEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeeccCCc--eEEEE
Confidence 567999999999999862 45789999996543 3346779999999999999999999999988777 99999
Q ss_pred ecCCCCCHHHHHhcCC
Q 003307 810 NYINAQSLAVYLQGKG 825 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~ 825 (832)
|||++|+|.++|+..+
T Consensus 96 e~~~~g~L~~~l~~~~ 111 (301)
T d1lufa_ 96 EYMAYGDLNEFLRSMS 111 (301)
T ss_dssp ECCTTCBHHHHHHHTC
T ss_pred EecCCCcHHHHHHhcC
Confidence 9999999999998654
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=4.7e-13 Score=139.30 Aligned_cols=87 Identities=28% Similarity=0.370 Sum_probs=75.4
Q ss_pred cCeeeeccCceEEEEEE------CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATL------DSGSILAVKRLREG-IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~------~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv 808 (832)
.+.||+|+||.||+|++ .+++.||||+++.. ......+|.+|++++.++ +|||||+++|+|...+. .++|
T Consensus 28 ~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~~--~~lv 105 (311)
T d1t46a_ 28 GKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGP--TLVI 105 (311)
T ss_dssp EEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS--CEEE
T ss_pred eeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCCE--EEEE
Confidence 67899999999999985 35678999999654 334456799999999998 69999999999998877 9999
Q ss_pred EecCCCCCHHHHHhcCC
Q 003307 809 SNYINAQSLAVYLQGKG 825 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~ 825 (832)
||||++|+|.++|++..
T Consensus 106 mE~~~~g~l~~~l~~~~ 122 (311)
T d1t46a_ 106 TEYCCYGDLLNFLRRKR 122 (311)
T ss_dssp EECCTTEEHHHHHHHTT
T ss_pred EEcCCCCCHHHHHHhcc
Confidence 99999999999998754
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=5.1e-13 Score=139.23 Aligned_cols=91 Identities=16% Similarity=0.290 Sum_probs=76.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHHHHHHHHh-cCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFAREVKKLG-NIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~-~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|+||+||+|+.. +|+.||||+++... ....+.+..|+.++. .++|||||++++++.+.+. .++||||
T Consensus 7 ~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~--~yivmEy 84 (320)
T d1xjda_ 7 HKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKEN--LFFVMEY 84 (320)
T ss_dssp EEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSE--EEEEEEC
T ss_pred eeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCc--eeEEEee
Confidence 578999999999999984 89999999995421 223456778887765 6899999999999998877 9999999
Q ss_pred CCCCCHHHHHhcCCCccc
Q 003307 812 INAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w 829 (832)
|++|+|.++++..+.+++
T Consensus 85 ~~~g~L~~~i~~~~~~~e 102 (320)
T d1xjda_ 85 LNGGDLMYHIQSCHKFDL 102 (320)
T ss_dssp CTTCBHHHHHHHHSSCCH
T ss_pred cCCCcHHHHhhccCCCCH
Confidence 999999999988776664
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=6.4e-13 Score=139.15 Aligned_cols=87 Identities=26% Similarity=0.333 Sum_probs=71.7
Q ss_pred cCeeeeccCceEEEEEEC-CC-----CEEEEEEeccC-ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SG-----SILAVKRLREG-IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g-----~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv 808 (832)
.+.||+|+||+||+|+.. .+ ..||||++... .......|.+|++++.++ +|||||+++|+|...+. .++|
T Consensus 42 ~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~--~~lv 119 (325)
T d1rjba_ 42 GKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGP--IYLI 119 (325)
T ss_dssp EEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS--CEEE
T ss_pred eeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCCe--EEEE
Confidence 678999999999999863 22 36999998543 233456799999999998 89999999999998887 9999
Q ss_pred EecCCCCCHHHHHhcCC
Q 003307 809 SNYINAQSLAVYLQGKG 825 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~ 825 (832)
||||++|+|.++|+.++
T Consensus 120 ~Ey~~~g~L~~~l~~~~ 136 (325)
T d1rjba_ 120 FEYCCYGDLLNYLRSKR 136 (325)
T ss_dssp EECCTTCBHHHHHHTTT
T ss_pred EEcCCCCcHHHHHHhcc
Confidence 99999999999998653
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=2.4e-12 Score=118.74 Aligned_cols=88 Identities=20% Similarity=0.197 Sum_probs=41.2
Q ss_pred CCCCCCCCEEECCCC-CCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCC
Q 003307 109 IGSIQSLEFLDLSHN-LFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSV 187 (832)
Q Consensus 109 ~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 187 (832)
+..+++|++|++++| .|+.+.+.+|.++++|+.|+|++|+|+.+.+.+|.++++|++|+|++|+|+...+..|..+ +|
T Consensus 27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l 105 (156)
T d2ifga3 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SL 105 (156)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CC
T ss_pred ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-cc
Confidence 334444444444433 2444444445555555555555555554444445555555555555555544333333332 34
Q ss_pred CEEECccCcC
Q 003307 188 VHVDLSNNQF 197 (832)
Q Consensus 188 ~~L~Ls~N~l 197 (832)
++|+|++|.+
T Consensus 106 ~~L~L~~Np~ 115 (156)
T d2ifga3 106 QELVLSGNPL 115 (156)
T ss_dssp CEEECCSSCC
T ss_pred cccccCCCcc
Confidence 4444444444
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.34 E-value=3e-14 Score=151.28 Aligned_cols=119 Identities=25% Similarity=0.347 Sum_probs=62.7
Q ss_pred cCCCCCCEEEccCCcCCCC-----cccccCCCCCCCEEEccCCccccc----CcccccCCCCCCeEeccCCcccccCCcc
Q 003307 375 SQFLRLTSFKVSNNSLEGD-----LPAVLGTYPELKVIDLSLNHLNGF----LLPSFFTSTKLTDLNLSGNNFSGPLPLQ 445 (832)
Q Consensus 375 ~~l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 445 (832)
..+..|+.|+|++|+++.. +...+..+++|+.|+|++|.++.. +...+..+++|++|+|++|.+++.-...
T Consensus 183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~ 262 (344)
T d2ca6a1 183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 262 (344)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence 3445556666666655421 223345556666777776666432 2234456667777777777665321111
Q ss_pred cccCCCCCcccCcccccEEEccCCcCcccCC----hhh-hcCCCCCEEeCcCCcCc
Q 003307 446 EIQNNPSTGSTQNLSLTSLDLAYNSLSGRLL----PGI-SKFHNLVYLNLSNNKFE 496 (832)
Q Consensus 446 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p----~~l-~~l~~L~~L~Ls~N~l~ 496 (832)
+...- ....+..|++||+++|.++.... ..+ .++++|+.|+|++|++.
T Consensus 263 l~~~l---~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 263 VVDAF---SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp HHHHH---HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHh---hhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 11000 00011237777777777764322 223 24667777888777775
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=5.5e-13 Score=138.18 Aligned_cols=91 Identities=19% Similarity=0.326 Sum_probs=74.1
Q ss_pred CeeeeccCceEEEEEE-CCCCEEEEEEeccCChh-----hHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 738 EVIGRSCHGTLYKATL-DSGSILAVKRLREGIAK-----GKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 738 ~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~-----~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
++||+|+||+||+|+. .+|+.||||+++..... ..+.+.+|++++++++|||||++++++...+. .++||||
T Consensus 4 ~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~--~~ivmE~ 81 (299)
T d1ua2a_ 4 DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSN--ISLVFDF 81 (299)
T ss_dssp EEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTC--CEEEEEC
T ss_pred eEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCc--eeehhhh
Confidence 5799999999999997 47999999998543221 12468899999999999999999999998877 9999999
Q ss_pred CCCCCHHHHHhcCCCcccc
Q 003307 812 INAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~~~l~w~ 830 (832)
|++|++..+.+.++.+++.
T Consensus 82 ~~~~~~~~~~~~~~~l~~~ 100 (299)
T d1ua2a_ 82 METDLEVIIKDNSLVLTPS 100 (299)
T ss_dssp CSEEHHHHHTTCCSSCCSS
T ss_pred hcchHHhhhhhcccCCCHH
Confidence 9999888777766666653
|
| >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Focal adhesion kinase 1 (fak) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=2e-12 Score=131.77 Aligned_cols=91 Identities=18% Similarity=0.234 Sum_probs=74.4
Q ss_pred cCeeeeccCceEEEEEEC----CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATLD----SGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~----~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~ 811 (832)
.+.||+|+||.||+|++. .+..||||+++.. .....+.|.+|++++++++|||||+++|+|.. +. .++||||
T Consensus 12 ~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~-~~--~~iv~E~ 88 (273)
T d1mp8a_ 12 GRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE-NP--VWIIMEL 88 (273)
T ss_dssp EEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS-SS--CEEEEEC
T ss_pred EEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-Ce--EEEEEEe
Confidence 678999999999999873 2357899998643 33345779999999999999999999999954 44 8999999
Q ss_pred CCCCCHHHHHhcC-CCcccc
Q 003307 812 INAQSLAVYLQGK-GLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~~~-~~l~w~ 830 (832)
|++|+|.+++... ..++|.
T Consensus 89 ~~~g~l~~~~~~~~~~l~~~ 108 (273)
T d1mp8a_ 89 CTLGELRSFLQVRKYSLDLA 108 (273)
T ss_dssp CTTEEHHHHHHHTTTTSCHH
T ss_pred ccCCcHHhhhhccCCCCCHH
Confidence 9999999987754 356663
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.30 E-value=2.1e-12 Score=136.98 Aligned_cols=91 Identities=20% Similarity=0.273 Sum_probs=74.2
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccCC---hhhHHHHH---HHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREGI---AKGKKEFA---REVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~---~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
.++||+|+||.||+|+.. +|+.||||++.... ......+. .|+++++.++|||||++++++...+. .++||
T Consensus 9 ~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~--~~ivm 86 (364)
T d1omwa3 9 HRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDK--LSFIL 86 (364)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSE--EEEEE
T ss_pred eeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCE--EEEEE
Confidence 678999999999999974 89999999985321 11223343 44777888899999999999998777 99999
Q ss_pred ecCCCCCHHHHHhcCCCccc
Q 003307 810 NYINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~~l~w 829 (832)
|||++|+|.++|.....+++
T Consensus 87 E~~~gg~L~~~l~~~~~~~e 106 (364)
T d1omwa3 87 DLMNGGDLHYHLSQHGVFSE 106 (364)
T ss_dssp CCCCSCBHHHHHHHHCSCCH
T ss_pred EecCCCcHHHHHHhcccccH
Confidence 99999999999988776665
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=2.5e-12 Score=134.04 Aligned_cols=91 Identities=24% Similarity=0.369 Sum_probs=72.7
Q ss_pred cCeeeeccCceEEEEEE-CCCC----EEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGS----ILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~----~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e 810 (832)
.++||+|+||+||+|+. .+|+ .||||+++.. .....++|.+|++++++++|||||+++|+|.+.+ .++++|
T Consensus 14 ~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~---~~~v~e 90 (317)
T d1xkka_ 14 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST---VQLITQ 90 (317)
T ss_dssp EEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESSS---EEEEEE
T ss_pred eeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC---eeEEEE
Confidence 57899999999999997 3554 5899988643 3345678999999999999999999999998644 689999
Q ss_pred cCCCCCHHHHHhcC-CCcccc
Q 003307 811 YINAQSLAVYLQGK-GLVLWF 830 (832)
Q Consensus 811 ~~~~GsL~~~l~~~-~~l~w~ 830 (832)
|+++|+|.+++..+ ..++|.
T Consensus 91 ~~~~~~l~~~~~~~~~~~~~~ 111 (317)
T d1xkka_ 91 LMPFGCLLDYVREHKDNIGSQ 111 (317)
T ss_dssp CCTTCBHHHHHHHTSSSCCHH
T ss_pred eccCCcccccccccccCCCHH
Confidence 99999999988765 456664
|
| >d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.28 E-value=2.5e-12 Score=135.57 Aligned_cols=92 Identities=18% Similarity=0.205 Sum_probs=79.2
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC---hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI---AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~ 812 (832)
.+.||+|+||.||+|+. .+|+.||||++.... ....+.+.+|+++|++++|||||++++++..... .++|+||+
T Consensus 46 ~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~--~~~v~e~~ 123 (350)
T d1rdqe_ 46 IKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSN--LYMVMEYV 123 (350)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE--EEEEEECC
T ss_pred EEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeecccccccccc--cccccccc
Confidence 56799999999999997 489999999985321 1234678999999999999999999999988777 99999999
Q ss_pred CCCCHHHHHhcCCCcccc
Q 003307 813 NAQSLAVYLQGKGLVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w~ 830 (832)
++|+|.+++...+.+++.
T Consensus 124 ~~g~l~~~l~~~~~l~e~ 141 (350)
T d1rdqe_ 124 AGGEMFSHLRRIGRFSEP 141 (350)
T ss_dssp TTCBHHHHHHHHCCCCHH
T ss_pred cccchhhhHhhcCCCCHH
Confidence 999999999887777653
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=3.6e-12 Score=117.51 Aligned_cols=91 Identities=22% Similarity=0.223 Sum_probs=80.0
Q ss_pred cccccCCCCCCEEEcCCC-CCcccCC-CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCC
Q 003307 83 FPTIIGLKMLCNVSVSNN-QLMGNIT-DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGL 160 (832)
Q Consensus 83 ~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 160 (832)
+..+..+++|++|++++| .++...+ .|.++++|+.|+|++|+|+.+.|..|..+++|++|+|++|+|+...+..|..+
T Consensus 24 p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~ 103 (156)
T d2ifga3 24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL 103 (156)
T ss_dssp TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC
T ss_pred cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc
Confidence 346778899999999876 4887766 79999999999999999999999999999999999999999996666666555
Q ss_pred CCCCEeeCcCCCCC
Q 003307 161 GKLKYLDLRANRFG 174 (832)
Q Consensus 161 ~~L~~L~L~~N~l~ 174 (832)
+|++|+|++|.+.
T Consensus 104 -~l~~L~L~~Np~~ 116 (156)
T d2ifga3 104 -SLQELVLSGNPLH 116 (156)
T ss_dssp -CCCEEECCSSCCC
T ss_pred -cccccccCCCccc
Confidence 7999999999986
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=1.7e-12 Score=132.05 Aligned_cols=91 Identities=26% Similarity=0.371 Sum_probs=66.9
Q ss_pred cCeeeeccCceEEEEEE--CCC--CEEEEEEeccC---ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL--DSG--SILAVKRLREG---IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~--~~g--~~vAvK~l~~~---~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~ 809 (832)
.+.||+|+||.||+|++ .++ ..||||+++.. .....++|.+|++++++++|||||+++|+|.+. . .++||
T Consensus 13 ~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~~-~--~~lv~ 89 (273)
T d1u46a_ 13 LEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTP-P--MKMVT 89 (273)
T ss_dssp EEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS-S--CEEEE
T ss_pred EEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeec-c--hheee
Confidence 55799999999999986 233 36899988543 223456899999999999999999999999754 4 68999
Q ss_pred ecCCCCCHHHHHhcC-CCcccc
Q 003307 810 NYINAQSLAVYLQGK-GLVLWF 830 (832)
Q Consensus 810 e~~~~GsL~~~l~~~-~~l~w~ 830 (832)
|||++|++.+++..+ +.++|.
T Consensus 90 e~~~~~~l~~~~~~~~~~l~~~ 111 (273)
T d1u46a_ 90 ELAPLGSLLDRLRKHQGHFLLG 111 (273)
T ss_dssp ECCTTCBHHHHHHHHGGGSCHH
T ss_pred eeecCcchhhhhhcccCCCCHH
Confidence 999999999987754 356664
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Probab=99.27 E-value=3.4e-12 Score=131.23 Aligned_cols=91 Identities=23% Similarity=0.265 Sum_probs=78.1
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
-+.||+|+||+||+|+.++|+.||||+++... ....+.|.+|+.+|++++|||||++++++...+. .++++||+.+
T Consensus 7 ~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~--~~i~~e~~~~ 84 (286)
T d1ob3a_ 7 LEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKR--LVLVFEHLDQ 84 (286)
T ss_dssp EEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSC--EEEEEECCSE
T ss_pred ccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCc--eeEEEEeehh
Confidence 46799999999999999899999999995432 2235679999999999999999999999998887 9999999998
Q ss_pred CCHHHHHhcCCCccc
Q 003307 815 QSLAVYLQGKGLVLW 829 (832)
Q Consensus 815 GsL~~~l~~~~~l~w 829 (832)
|.+..+.+..+.+++
T Consensus 85 ~~~~~~~~~~~~l~~ 99 (286)
T d1ob3a_ 85 DLKKLLDVCEGGLES 99 (286)
T ss_dssp EHHHHHHTSTTCCCH
T ss_pred hhHHHHHhhcCCcch
Confidence 888877776666665
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=2.9e-12 Score=134.25 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=71.7
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhc-CCCCcceeeeeEEECC--CCceEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGN-IKHPNLVSLQGYYWGP--KEHEKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~-~~H~niv~l~g~~~~~--~~~~~~lv~e~~ 812 (832)
+.+||+|+||+||+|+. .+|+.||||+++.. ..+.+|++++.+ .+|||||++++++.+. .....++|||||
T Consensus 17 ~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~-----~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~ivmEy~ 91 (335)
T d2ozaa1 17 SQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECL 91 (335)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECC
T ss_pred eEEeeeccCeEEEEEEECCCCCEEEEEEECCc-----HHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEEEEEECC
Confidence 35799999999999997 58999999998642 456789988765 5899999999998642 222489999999
Q ss_pred CCCCHHHHHhcCC--Ccccc
Q 003307 813 NAQSLAVYLQGKG--LVLWF 830 (832)
Q Consensus 813 ~~GsL~~~l~~~~--~l~w~ 830 (832)
++|+|+++|..++ .++|.
T Consensus 92 ~gg~L~~~i~~~~~~~l~e~ 111 (335)
T d2ozaa1 92 DGGELFSRIQDRGDQAFTER 111 (335)
T ss_dssp CSEEHHHHHHSCSCCCEEHH
T ss_pred CCCcHHHHHHhcCCCCcCHH
Confidence 9999999998653 56653
|
| >d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fibroblast growth factor receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=4.3e-12 Score=131.11 Aligned_cols=87 Identities=25% Similarity=0.336 Sum_probs=68.8
Q ss_pred cCeeeeccCceEEEEEEC--------CCCEEEEEEeccCC-hhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEE
Q 003307 737 AEVIGRSCHGTLYKATLD--------SGSILAVKRLREGI-AKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKL 806 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~--------~g~~vAvK~l~~~~-~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~ 806 (832)
.+.||+|+||.||+|+.. ++..||||+++... .....+|.+|+..+.++ +|||||+++|+|...+. .+
T Consensus 18 ~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~~~--~~ 95 (299)
T d1fgka_ 18 GKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGP--LY 95 (299)
T ss_dssp EEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS--CE
T ss_pred eeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccCCe--EE
Confidence 568999999999999852 23479999996543 34467899999999888 89999999999998777 99
Q ss_pred EEEecCCCCCHHHHHhcCC
Q 003307 807 VISNYINAQSLAVYLQGKG 825 (832)
Q Consensus 807 lv~e~~~~GsL~~~l~~~~ 825 (832)
+|||||++|+|.++|+.++
T Consensus 96 ~v~e~~~~g~l~~~i~~~~ 114 (299)
T d1fgka_ 96 VIVEYASKGNLREYLQARR 114 (299)
T ss_dssp EEECCCTTCBHHHHHHTTS
T ss_pred EEEEccCCCcHHHHHHhhc
Confidence 9999999999999998654
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=1e-11 Score=128.24 Aligned_cols=91 Identities=22% Similarity=0.353 Sum_probs=71.5
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCC--hhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGI--AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
.+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|++++++++|||||++++++.+.+. .++|||||.
T Consensus 7 ~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~--~~iv~e~~~ 84 (298)
T d1gz8a_ 7 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENK--LYLVFEFLH 84 (298)
T ss_dssp EEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTE--EEEEEECCS
T ss_pred ccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccc--eeEEEeecC
Confidence 46799999999999997 589999999985432 2234679999999999999999999999998777 999999998
Q ss_pred CCCHHHHHhc--CCCcccc
Q 003307 814 AQSLAVYLQG--KGLVLWF 830 (832)
Q Consensus 814 ~GsL~~~l~~--~~~l~w~ 830 (832)
+| +.+++.. ...++|.
T Consensus 85 ~~-~~~~~~~~~~~~l~e~ 102 (298)
T d1gz8a_ 85 QD-LKKFMDASALTGIPLP 102 (298)
T ss_dssp EE-HHHHHHHTTTTCCCHH
T ss_pred Cc-hhhhhhhhcccCCCHH
Confidence 65 4444432 3446653
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.20 E-value=6.5e-14 Score=135.19 Aligned_cols=113 Identities=22% Similarity=0.237 Sum_probs=79.1
Q ss_pred ccccCCCCCCEEEcCCCCCcccCCCCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCC
Q 003307 84 PTIIGLKMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKL 163 (832)
Q Consensus 84 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 163 (832)
..+..|++|+.|+|++|+|+.. +.+..+++|++|+|++|.|+.+ |..+..+++|++|++++|+|+.. +.+.++++|
T Consensus 42 ~sl~~L~~L~~L~Ls~n~I~~i-~~l~~l~~L~~L~Ls~N~i~~i-~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L 117 (198)
T d1m9la_ 42 ATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASL--SGIEKLVNL 117 (198)
T ss_dssp HHHHHTTTCCEEECSEEEESCC-CCHHHHTTCCEEECCEEEECSC-SSHHHHHHHCCEEECSEEECCCH--HHHHHHHHS
T ss_pred hHHhcccccceeECcccCCCCc-ccccCCccccChhhcccccccc-ccccccccccccccccccccccc--ccccccccc
Confidence 4567777888888888877743 4577777888888888877743 44445556778888888877743 246677778
Q ss_pred CEeeCcCCCCCCccc-hhhhcCCCCCEEECccCcCccc
Q 003307 164 KYLDLRANRFGGDIM-HLLSQLGSVVHVDLSNNQFSGS 200 (832)
Q Consensus 164 ~~L~L~~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~ 200 (832)
++|+|++|+|+.... ..+..+++|++|+|++|++...
T Consensus 118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~ 155 (198)
T d1m9la_ 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred cccccccchhccccccccccCCCccceeecCCCccccC
Confidence 888888887765432 4577777777777777777643
|
| >d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=1.8e-11 Score=126.15 Aligned_cols=91 Identities=24% Similarity=0.280 Sum_probs=79.2
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCceEEEEEecCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISNYIN 813 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~~~~lv~e~~~ 813 (832)
-+.||+|+||+||+|+. .+|+.||||+++.. .....+.+.+|++++++++|||||+++++|..... .++|+||+.
T Consensus 7 i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~--~~iv~~~~~ 84 (292)
T d1unla_ 7 LEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKK--LTLVFEFCD 84 (292)
T ss_dssp EEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE--EEEEEECCS
T ss_pred eeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccc--eeEEeeecc
Confidence 46799999999999997 58999999998543 23346789999999999999999999999998887 999999999
Q ss_pred CCCHHHHHhcCCCccc
Q 003307 814 AQSLAVYLQGKGLVLW 829 (832)
Q Consensus 814 ~GsL~~~l~~~~~l~w 829 (832)
+++|..+++..+.+++
T Consensus 85 ~~~l~~~~~~~~~~~~ 100 (292)
T d1unla_ 85 QDLKKYFDSCNGDLDP 100 (292)
T ss_dssp EEHHHHHHHTTTCCCH
T ss_pred ccccccccccccccch
Confidence 9999999887776665
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.18 E-value=1e-13 Score=133.77 Aligned_cols=111 Identities=16% Similarity=0.216 Sum_probs=74.4
Q ss_pred CCCCCCCCCEEECCCCCCCccCcccccCCCCCCEEEcccccccccCCCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCC
Q 003307 108 DIGSIQSLEFLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSV 187 (832)
Q Consensus 108 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 187 (832)
.+..+++|++|+|++|+|+.+ + .|..+++|++|+|++|.|+ .+|..+..+++|++|++++|+++.. +.+..+++|
T Consensus 43 sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L 117 (198)
T d1m9la_ 43 TLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNL 117 (198)
T ss_dssp HHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHS
T ss_pred HHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--ccccccccc
Confidence 466788888888888888854 3 4778888888888888887 3455555566788888888888753 347777888
Q ss_pred CEEECccCcCccccCCCCCCCCCCCCccEEECCCCCCe
Q 003307 188 VHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLV 225 (832)
Q Consensus 188 ~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 225 (832)
++|++++|+++.... +..+..+++|+.|+|++|.+.
T Consensus 118 ~~L~L~~N~i~~~~~--~~~l~~l~~L~~L~L~~N~l~ 153 (198)
T d1m9la_ 118 RVLYMSNNKITNWGE--IDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp SEEEESEEECCCHHH--HHHHTTTTTCSEEEECSSHHH
T ss_pred cccccccchhccccc--cccccCCCccceeecCCCccc
Confidence 888888887763211 112233344445555444443
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=2.8e-11 Score=125.07 Aligned_cols=88 Identities=30% Similarity=0.422 Sum_probs=70.1
Q ss_pred cCeeeeccCceEEEEEEC------CCCEEEEEEeccC-ChhhHHHHHHHHHHHhcC-CCCcceeeeeEEECCCCceEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREG-IAKGKKEFAREVKKLGNI-KHPNLVSLQGYYWGPKEHEKLVI 808 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~-~H~niv~l~g~~~~~~~~~~~lv 808 (832)
.+.||+|+||.||+|+.. +++.||||+++.. .....+.|.+|++.+.++ +|+|||.+++++...+. ..++|
T Consensus 18 ~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~-~~~iv 96 (299)
T d1ywna1 18 GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG-PLMVI 96 (299)
T ss_dssp EEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTS-CCEEE
T ss_pred eeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccCCC-eEEEE
Confidence 678999999999999852 4568999999653 334456788899888776 78999999999876543 38999
Q ss_pred EecCCCCCHHHHHhcCC
Q 003307 809 SNYINAQSLAVYLQGKG 825 (832)
Q Consensus 809 ~e~~~~GsL~~~l~~~~ 825 (832)
||||++|+|.++|+.++
T Consensus 97 ~E~~~~g~L~~~l~~~~ 113 (299)
T d1ywna1 97 VEFCKFGNLSTYLRSKR 113 (299)
T ss_dssp EECCTTCBHHHHHHHTG
T ss_pred EEecCCCcHHHHHHhcc
Confidence 99999999999998653
|
| >d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Proto-oncogene serine/threonine-protein kinase Pim-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=8.3e-12 Score=127.03 Aligned_cols=92 Identities=15% Similarity=0.256 Sum_probs=75.7
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCCh------hhHHHHHHHHHHHhcCC--CCcceeeeeEEECCCCceEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIA------KGKKEFAREVKKLGNIK--HPNLVSLQGYYWGPKEHEKLV 807 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~------~~~~~f~~e~~~l~~~~--H~niv~l~g~~~~~~~~~~~l 807 (832)
.++||+|+||.||+|+. .+|+.||||+++.... .....+.+|++++++++ |||||++++++.+.+. .++
T Consensus 9 ~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~--~~l 86 (273)
T d1xwsa_ 9 GPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS--FVL 86 (273)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE--EEE
T ss_pred eEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCe--EEE
Confidence 67899999999999997 5899999999853211 11234778999999986 9999999999998777 999
Q ss_pred EEecCCC-CCHHHHHhcCCCcccc
Q 003307 808 ISNYINA-QSLAVYLQGKGLVLWF 830 (832)
Q Consensus 808 v~e~~~~-GsL~~~l~~~~~l~w~ 830 (832)
||||+.+ +++.+++..++.+++.
T Consensus 87 v~e~~~~~~~l~~~~~~~~~l~e~ 110 (273)
T d1xwsa_ 87 ILERPEPVQDLFDFITERGALQEE 110 (273)
T ss_dssp EEECCSSEEEHHHHHHHHCSCCHH
T ss_pred EEEeccCcchHHHHHhccCCCCHH
Confidence 9999975 6899998877777764
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=6.6e-11 Score=124.73 Aligned_cols=92 Identities=16% Similarity=0.172 Sum_probs=70.2
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC-ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCCc--eEEEEEecC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG-IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEH--EKLVISNYI 812 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~~--~~~lv~e~~ 812 (832)
...||+|+||+||+|+. .+|+.||||+++.. .....+.+.+|+++|.+++|||||+++++|...... ..++++||+
T Consensus 13 ~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~~l~~~~ 92 (345)
T d1pmea_ 13 LSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYLVTHL 92 (345)
T ss_dssp EEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEEEC
T ss_pred EEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceEEEEEee
Confidence 57899999999999986 58999999999643 334456799999999999999999999999754321 134555677
Q ss_pred CCCCHHHHHhcCCCccc
Q 003307 813 NAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 813 ~~GsL~~~l~~~~~l~w 829 (832)
.+|+|++++..+ +++|
T Consensus 93 ~~g~L~~~l~~~-~l~~ 108 (345)
T d1pmea_ 93 MGADLYKLLKTQ-HLSN 108 (345)
T ss_dssp CCEEHHHHHHHC-CCCH
T ss_pred cCCchhhhhhcC-CCCH
Confidence 899999999754 4554
|
| >d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Ribosomal protein S6 kinase alpha 5, Msk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=1.9e-11 Score=127.33 Aligned_cols=90 Identities=26% Similarity=0.368 Sum_probs=74.9
Q ss_pred cCeeeeccCceEEEEEE----CCCCEEEEEEeccCC----hhhHHHHHHHHHHHhcCCC-CcceeeeeEEECCCCceEEE
Q 003307 737 AEVIGRSCHGTLYKATL----DSGSILAVKRLREGI----AKGKKEFAREVKKLGNIKH-PNLVSLQGYYWGPKEHEKLV 807 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~----~~g~~vAvK~l~~~~----~~~~~~f~~e~~~l~~~~H-~niv~l~g~~~~~~~~~~~l 807 (832)
.+.||+|+||+||+|+. .+|+.||||.++... ....+.+.+|++++.+++| |||+++++++.+... .++
T Consensus 29 ~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~--~~~ 106 (322)
T d1vzoa_ 29 LKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK--LHL 106 (322)
T ss_dssp EEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE--EEE
T ss_pred EEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCc--eee
Confidence 67899999999999985 268999999985321 1224568899999999977 899999999988877 999
Q ss_pred EEecCCCCCHHHHHhcCCCcc
Q 003307 808 ISNYINAQSLAVYLQGKGLVL 828 (832)
Q Consensus 808 v~e~~~~GsL~~~l~~~~~l~ 828 (832)
|+|||++|+|.++++..+.+.
T Consensus 107 v~e~~~~~~L~~~i~~~~~~~ 127 (322)
T d1vzoa_ 107 ILDYINGGELFTHLSQRERFT 127 (322)
T ss_dssp EECCCCSCBHHHHHHHHSCCC
T ss_pred eeecccccHHHHHHHhccccc
Confidence 999999999999998766543
|
| >d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase CK2, alpha subunit species: Rattus norvegicus [TaxId: 10116]
Probab=99.06 E-value=8.7e-11 Score=123.01 Aligned_cols=81 Identities=22% Similarity=0.347 Sum_probs=69.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCC-CCcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIK-HPNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~-H~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
...||+|+||+||+|+. .+|+.||||+++... .+.+.+|+++|.+++ ||||+++++++........++|||||++
T Consensus 40 ~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~---~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~e~~~~ 116 (328)
T d3bqca1 40 VRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNN 116 (328)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEECSSC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEEECCCS
T ss_pred EEEEecCcCeEEEEEEECCCCCEEEEEEECHHH---HHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEEeecCC
Confidence 56899999999999997 589999999996533 467899999999995 9999999999986544348999999999
Q ss_pred CCHHHH
Q 003307 815 QSLAVY 820 (832)
Q Consensus 815 GsL~~~ 820 (832)
|+|.++
T Consensus 117 ~~L~~~ 122 (328)
T d3bqca1 117 TDFKQL 122 (328)
T ss_dssp CBGGGT
T ss_pred CcHHHH
Confidence 998765
|
| >d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=1.2e-10 Score=122.79 Aligned_cols=91 Identities=16% Similarity=0.247 Sum_probs=66.6
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC----ceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE----HEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~----~~~~lv~ 809 (832)
...||+|+||+||+|+. .+|+.||||+++.. .....+.+.+|+++|++++|||||+++++|...+. ...++||
T Consensus 23 i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~ 102 (346)
T d1cm8a_ 23 LQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVM 102 (346)
T ss_dssp EEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEEEE
T ss_pred EEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccceEEEEE
Confidence 56799999999999997 58999999999643 33345678999999999999999999999976542 1369999
Q ss_pred ecCCCCCHHHHHhcCCCccc
Q 003307 810 NYINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 810 e~~~~GsL~~~l~~~~~l~w 829 (832)
||| +++|..+.+. +.+++
T Consensus 103 e~~-~~~l~~~~~~-~~l~~ 120 (346)
T d1cm8a_ 103 PFM-GTDLGKLMKH-EKLGE 120 (346)
T ss_dssp ECC-SEEHHHHHHH-CCCCH
T ss_pred ecc-cccHHHHHHh-ccccH
Confidence 999 4578777654 34554
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=9.4e-11 Score=123.80 Aligned_cols=90 Identities=24% Similarity=0.416 Sum_probs=68.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCC----CceEEEEEec
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK----EHEKLVISNY 811 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~----~~~~~lv~e~ 811 (832)
.++||+|+||+||+|+. .+|+.||||++..... .+.+|+++|++++|||||+++++|.... ....++||||
T Consensus 25 ~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~----~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~Ey 100 (350)
T d1q5ka_ 25 TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDY 100 (350)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS----SCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEEEEEC
T ss_pred eeEEeeCcCeEEEEEEECCCCCEEEEEEECccch----HHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEEEEec
Confidence 56899999999999998 4899999999965432 2347999999999999999999986432 2237899999
Q ss_pred CCCCCHHHHHh---cCCCcccc
Q 003307 812 INAQSLAVYLQ---GKGLVLWF 830 (832)
Q Consensus 812 ~~~GsL~~~l~---~~~~l~w~ 830 (832)
|++|.+..+.+ ....++|.
T Consensus 101 ~~~~~~~~l~~~~~~~~~l~~~ 122 (350)
T d1q5ka_ 101 VPETVYRVARHYSRAKQTLPVI 122 (350)
T ss_dssp CSEEHHHHHHHHHHTTCCCCHH
T ss_pred cCCccHHHHHhhhhccCCCCHH
Confidence 99775444433 44456653
|
| >d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=9.8e-11 Score=123.77 Aligned_cols=92 Identities=18% Similarity=0.232 Sum_probs=73.3
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCCC---ceEEEEEe
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKE---HEKLVISN 810 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~~---~~~~lv~e 810 (832)
...||+|+||+||+|+. .+|+.||||+++.. .....+.+.+|+++|++++|||+|++++++..... ...++|+|
T Consensus 23 ~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~~~~i~~ 102 (348)
T d2gfsa1 23 LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVT 102 (348)
T ss_dssp EEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCCCCEEEE
T ss_pred EEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCceEEEEE
Confidence 56799999999999996 58999999999643 23345678999999999999999999999864321 12467788
Q ss_pred cCCCCCHHHHHhcCCCccc
Q 003307 811 YINAQSLAVYLQGKGLVLW 829 (832)
Q Consensus 811 ~~~~GsL~~~l~~~~~l~w 829 (832)
|+.+|+|.++++.+ .+++
T Consensus 103 ~~~gg~L~~~~~~~-~l~e 120 (348)
T d2gfsa1 103 HLMGADLNNIVKCQ-KLTD 120 (348)
T ss_dssp ECCSEEHHHHHTTC-CCCH
T ss_pred eecCCchhhhcccc-cccH
Confidence 88999999998754 4554
|
| >d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 9, CDK9 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=1.4e-10 Score=120.89 Aligned_cols=91 Identities=19% Similarity=0.189 Sum_probs=69.9
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCC------CceEEE
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK------EHEKLV 807 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~------~~~~~l 807 (832)
.+.||+|+||+||+|+. .+|+.||||++... .....+.+.+|+++|++++|||++++++++.... .+..++
T Consensus 15 ~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~~~~~~i 94 (318)
T d3blha1 15 LAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYL 94 (318)
T ss_dssp EEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC----------CEEE
T ss_pred EEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeecccccccccCceEEE
Confidence 56899999999999997 58999999998432 2233567899999999999999999999986532 123799
Q ss_pred EEecCCCCCHHHHHhcCCCc
Q 003307 808 ISNYINAQSLAVYLQGKGLV 827 (832)
Q Consensus 808 v~e~~~~GsL~~~l~~~~~l 827 (832)
|||||++|.+..+......+
T Consensus 95 v~e~~~~~~~~~~~~~~~~~ 114 (318)
T d3blha1 95 VFDFCEHDLAGLLSNVLVKF 114 (318)
T ss_dssp EEECCCEEHHHHHTCTTCCC
T ss_pred EEeccCCCccchhhhccccc
Confidence 99999988777665544443
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=1.6e-10 Score=122.19 Aligned_cols=85 Identities=21% Similarity=0.272 Sum_probs=66.5
Q ss_pred cCeeeeccCceEEEEEEC-CCCEEEEEEeccC--ChhhHHHHHHHHHHHhcCCCCcceeeeeEEECCC----CceEEEEE
Q 003307 737 AEVIGRSCHGTLYKATLD-SGSILAVKRLREG--IAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPK----EHEKLVIS 809 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~~~~----~~~~~lv~ 809 (832)
.+.||+|+||+||+|+.. +|+.||||+++.. .....+.+.+|++++++++|||||++++++...+ ....++||
T Consensus 22 ~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~~~iv~ 101 (355)
T d2b1pa1 22 LKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVM 101 (355)
T ss_dssp EEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEEEE
T ss_pred EEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCceeEEEE
Confidence 568999999999999974 7999999999643 2334567899999999999999999999997542 12489999
Q ss_pred ecCCCCCHHHHHh
Q 003307 810 NYINAQSLAVYLQ 822 (832)
Q Consensus 810 e~~~~GsL~~~l~ 822 (832)
|||.+| +.+.++
T Consensus 102 Ey~~~~-l~~~~~ 113 (355)
T d2b1pa1 102 ELMDAN-LCQVIQ 113 (355)
T ss_dssp ECCSEE-HHHHHT
T ss_pred eccchH-HHHhhh
Confidence 999765 555554
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.87 E-value=1.5e-09 Score=111.15 Aligned_cols=88 Identities=13% Similarity=0.120 Sum_probs=71.4
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCC-CcceeeeeEEECCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKH-PNLVSLQGYYWGPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H-~niv~l~g~~~~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||+||+|+. .+|+.||||.+..... .+++.+|++.+..++| +|++.+++++..... .++||||+ +
T Consensus 10 ~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~--~~~vme~~-~ 84 (293)
T d1csna_ 10 GRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD--APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLH--NVLVIDLL-G 84 (293)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT--SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTE--EEEEEECC-C
T ss_pred EEEEecCCCeEEEEEEECCCCCEEEEEEEccccC--cHHHHHHHHHHHHhcCCCCCCEEEEEeecCCc--cEEEEEec-C
Confidence 67899999999999997 4899999998854322 2457788899998875 899999999987776 89999999 5
Q ss_pred CCHHHHHhcCC-Cccc
Q 003307 815 QSLAVYLQGKG-LVLW 829 (832)
Q Consensus 815 GsL~~~l~~~~-~l~w 829 (832)
|+|.++++..+ .+++
T Consensus 85 ~~l~~~~~~~~~~~~~ 100 (293)
T d1csna_ 85 PSLEDLLDLCGRKFSV 100 (293)
T ss_dssp CBHHHHHHHTTTCCCH
T ss_pred CCHHHHHHhhccchhh
Confidence 89999987654 4544
|
| >d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.87 E-value=1.2e-09 Score=112.40 Aligned_cols=89 Identities=13% Similarity=0.087 Sum_probs=67.0
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCCCCcceeeeeEEE-CCCCceEEEEEecCCC
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYW-GPKEHEKLVISNYINA 814 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~H~niv~l~g~~~-~~~~~~~~lv~e~~~~ 814 (832)
.+.||+|+||.||+|+. .+|+.||||.+..... .+++..|++++++++|+|+|..+++|. ..+. .++|||||+
T Consensus 12 ~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~--~~ivme~~~- 86 (299)
T d1ckia_ 12 GRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDY--NVMVMELLG- 86 (299)
T ss_dssp EEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT--SCCHHHHHHHHHHSTTSTTCCCEEEEEEETTE--EEEEEECCC-
T ss_pred eEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc--CHHHHHHHHHHHHccCCCcccEEEEEEecCCE--EEEEEEEcC-
Confidence 57899999999999997 5799999998864322 245789999999999888777666654 4444 889999996
Q ss_pred CCHHHHHh-cCCCcccc
Q 003307 815 QSLAVYLQ-GKGLVLWF 830 (832)
Q Consensus 815 GsL~~~l~-~~~~l~w~ 830 (832)
|++.+.+. ..+.+++.
T Consensus 87 ~~l~~~~~~~~~~~~~~ 103 (299)
T d1ckia_ 87 PSLEDLFNFCSRKFSLK 103 (299)
T ss_dssp CBHHHHHHHTTTCCCHH
T ss_pred CchhhhhhhccCCCcHH
Confidence 46655554 45556653
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=1.7e-09 Score=111.68 Aligned_cols=93 Identities=23% Similarity=0.218 Sum_probs=65.4
Q ss_pred cCeeeeccCceEEEEEE-CC-CCEEEEEEeccC--ChhhHHHHHHHHHHHhc---CCCCcceeeeeEEECC---CCceEE
Q 003307 737 AEVIGRSCHGTLYKATL-DS-GSILAVKRLREG--IAKGKKEFAREVKKLGN---IKHPNLVSLQGYYWGP---KEHEKL 806 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~-g~~vAvK~l~~~--~~~~~~~f~~e~~~l~~---~~H~niv~l~g~~~~~---~~~~~~ 806 (832)
...||+|+||+||+|+. .+ ++.||||+++.. .......+.+|+++++. .+|||||+++++|... .....+
T Consensus 12 ~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~~~~~~~ 91 (305)
T d1blxa_ 12 VAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLT 91 (305)
T ss_dssp EEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEE
T ss_pred EEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccccCceEE
Confidence 56799999999999997 44 678999998532 11122345667766655 4899999999998632 222489
Q ss_pred EEEecCCCCCHHHHHhcC-CCccc
Q 003307 807 VISNYINAQSLAVYLQGK-GLVLW 829 (832)
Q Consensus 807 lv~e~~~~GsL~~~l~~~-~~l~w 829 (832)
+++|||++|.+....... ..+++
T Consensus 92 ~~~e~~~~~~~~~~~~~~~~~~~~ 115 (305)
T d1blxa_ 92 LVFEHVDQDLTTYLDKVPEPGVPT 115 (305)
T ss_dssp EEEECCSCBHHHHHHHSCTTCSCH
T ss_pred EEEEeccCCchhhhhhccCCCCCH
Confidence 999999998776554433 34544
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=1.4e-08 Score=93.54 Aligned_cols=69 Identities=20% Similarity=0.073 Sum_probs=41.7
Q ss_pred cccccCCCCCCEEEcccccccccC--CCCCCCCCCCCEeeCcCCCCCCccchhhhcCCCCCEEECccCcCc
Q 003307 130 PSGIVSLKNLMLLNISSNSFEGTF--PSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFS 198 (832)
Q Consensus 130 p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 198 (832)
+..+..+++|++|+|++|+|+... +..+..+++|+.|+|++|+|+...+-.+....+|+.|++++|.++
T Consensus 58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~ 128 (162)
T d1koha1 58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128 (162)
T ss_dssp HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence 334455667777777777776432 234556677777777777776544433444445666677776665
|
| >d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: RIO1-like kinases domain: Rio2 serine protein kinase C-terminal domain species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.30 E-value=3.2e-07 Score=86.87 Aligned_cols=75 Identities=13% Similarity=0.201 Sum_probs=58.2
Q ss_pred cCeeeeccCceEEEEEECCCCEEEEEEeccCCh------------------hhHHHHHHHHHHHhcCCCCcceeeeeEEE
Q 003307 737 AEVIGRSCHGTLYKATLDSGSILAVKRLREGIA------------------KGKKEFAREVKKLGNIKHPNLVSLQGYYW 798 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~~g~~vAvK~l~~~~~------------------~~~~~f~~e~~~l~~~~H~niv~l~g~~~ 798 (832)
++.||+|+||.||+|+..+|+.||||.++.... .....+.+|.+.+.++.|.++++.+++.
T Consensus 5 g~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~~- 83 (191)
T d1zara2 5 GKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWE- 83 (191)
T ss_dssp EEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEEE-
T ss_pred CCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEec-
Confidence 678999999999999998999999998642110 1123456788999999999999887653
Q ss_pred CCCCceEEEEEecCCCCCH
Q 003307 799 GPKEHEKLVISNYINAQSL 817 (832)
Q Consensus 799 ~~~~~~~~lv~e~~~~GsL 817 (832)
. .+++|||++++.+
T Consensus 84 --~---~~lvme~~~~~~~ 97 (191)
T d1zara2 84 --G---NAVLMELIDAKEL 97 (191)
T ss_dssp --T---TEEEEECCCCEEG
T ss_pred --C---CEEEEEeeccccc
Confidence 2 4799999998654
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=3.1e-08 Score=91.23 Aligned_cols=86 Identities=31% Similarity=0.334 Sum_probs=46.8
Q ss_pred ccccCCCCCCCEEEccCCcccccC--cccccCCCCCCeEeccCCcccccCCcccccCCCCCcccCcccccEEEccCCcCc
Q 003307 395 PAVLGTYPELKVIDLSLNHLNGFL--LPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLS 472 (832)
Q Consensus 395 p~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~ 472 (832)
+..+..+++|++|+|++|+|+... +..+..+++|+.|+|++|+++..-+...... ..|+.|++++|.+.
T Consensus 58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~---------~~L~~L~L~~Npl~ 128 (162)
T d1koha1 58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG---------LKLEELWLDGNSLS 128 (162)
T ss_dssp HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTT---------CCCSSCCCTTSTTS
T ss_pred HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhc---------cccceeecCCCCcC
Confidence 333445666777777777766542 2335556677777777776664322222211 12566666666665
Q ss_pred ccCCh-------hhhcCCCCCEEe
Q 003307 473 GRLLP-------GISKFHNLVYLN 489 (832)
Q Consensus 473 ~~~p~-------~l~~l~~L~~L~ 489 (832)
..... .+..+++|+.||
T Consensus 129 ~~~~~~~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 129 DTFRDQSTYISAIRERFPKLLRLD 152 (162)
T ss_dssp SSSSSHHHHHHHHHTTSTTCCEET
T ss_pred cCcccchhHHHHHHHHCCCCCEEC
Confidence 44332 144566666665
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.20 E-value=5e-07 Score=95.11 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=60.9
Q ss_pred cCeeeeccCceEEEEEE-CCCCEEEEEEeccCChhhHHHHHHHHHHHhcCC-----------CCcceeeeeEEECCCCce
Q 003307 737 AEVIGRSCHGTLYKATL-DSGSILAVKRLREGIAKGKKEFAREVKKLGNIK-----------HPNLVSLQGYYWGPKEHE 804 (832)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~e~~~l~~~~-----------H~niv~l~g~~~~~~~~~ 804 (832)
...||+|+||+||+|+. .+|+.||||+++.... ..+.+.+|++++.+++ |+|||++++++.......
T Consensus 18 ~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~-~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~ 96 (362)
T d1q8ya_ 18 VRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKV-YTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNG 96 (362)
T ss_dssp EEEEEECSSEEEEEEEETTTTEEEEEEEECSCHH-HHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTE
T ss_pred EEEEeeCCCeEEEEEEECCCCCEEEEEEEecccc-chHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeeccccc
Confidence 57899999999999997 5899999999975432 3467788998888775 578999999886544334
Q ss_pred EEEEEecCCCCC
Q 003307 805 KLVISNYINAQS 816 (832)
Q Consensus 805 ~~lv~e~~~~Gs 816 (832)
.+++++++..+.
T Consensus 97 ~~~~~~~~~~~~ 108 (362)
T d1q8ya_ 97 VHVVMVFEVLGE 108 (362)
T ss_dssp EEEEEEECCCCE
T ss_pred eeeeeeeccccc
Confidence 677777766554
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.74 E-value=8.8e-06 Score=74.64 Aligned_cols=110 Identities=15% Similarity=0.106 Sum_probs=68.8
Q ss_pred CCCCCCEEEcCCC-CCccc----CC-CCCCCCCCCEEECCCCCCCcc----CcccccCCCCCCEEEccccccccc----C
Q 003307 88 GLKMLCNVSVSNN-QLMGN----IT-DIGSIQSLEFLDLSHNLFHGL----IPSGIVSLKNLMLLNISSNSFEGT----F 153 (832)
Q Consensus 88 ~l~~L~~L~Ls~n-~l~~~----~~-~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~ 153 (832)
+.+.|+.|+|+++ .+... +- .+...+.|++|+|++|.+... +...+...+.|++|+|++|.|+.. +
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l 92 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 92 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence 3467788888763 45432 11 355667788888888877633 223344567788888888877642 2
Q ss_pred CCCCCCCCCCCEeeCcCCCCCCc-------cchhhhcCCCCCEEECccCcC
Q 003307 154 PSGFGGLGKLKYLDLRANRFGGD-------IMHLLSQLGSVVHVDLSNNQF 197 (832)
Q Consensus 154 p~~~~~l~~L~~L~L~~N~l~~~-------~~~~l~~l~~L~~L~Ls~N~l 197 (832)
-.++...+.|++|+|++|++... +...+...++|+.|+++.+..
T Consensus 93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~ 143 (167)
T d1pgva_ 93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 143 (167)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence 23456667788888887765432 334455667777777766543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.33 E-value=6.1e-05 Score=68.77 Aligned_cols=42 Identities=17% Similarity=0.133 Sum_probs=18.7
Q ss_pred cCCCCCCCEEEccCCcccccC----cccccCCCCCCeEeccCCccc
Q 003307 398 LGTYPELKVIDLSLNHLNGFL----LPSFFTSTKLTDLNLSGNNFS 439 (832)
Q Consensus 398 ~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~ 439 (832)
+...+.|+.|+|++|.+.... ...+...+.|+.|+|++|.++
T Consensus 40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~ 85 (167)
T d1pgva_ 40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 85 (167)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence 334444555555555443211 112233445555555555544
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.00 E-value=0.0001 Score=67.10 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=70.1
Q ss_pred cCCCCCCEEEcCC-CCCcccC----C-CCCCCCCCCEEECCCCCCCccC----cccccCCCCCCEEEccccccccc----
Q 003307 87 IGLKMLCNVSVSN-NQLMGNI----T-DIGSIQSLEFLDLSHNLFHGLI----PSGIVSLKNLMLLNISSNSFEGT---- 152 (832)
Q Consensus 87 ~~l~~L~~L~Ls~-n~l~~~~----~-~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~---- 152 (832)
.+.+.|+.|+|++ +.++... - .+...++|++|+|++|.++... ...+...+.|+.|++++|.++..
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~ 93 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 93 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence 3457788888876 4454321 1 3556778888888888876442 23445567888888888877532
Q ss_pred CCCCCCCCCCCCEeeC--cCCCCCC----ccchhhhcCCCCCEEECccCcC
Q 003307 153 FPSGFGGLGKLKYLDL--RANRFGG----DIMHLLSQLGSVVHVDLSNNQF 197 (832)
Q Consensus 153 ~p~~~~~l~~L~~L~L--~~N~l~~----~~~~~l~~l~~L~~L~Ls~N~l 197 (832)
+...+...++|+.++| ++|.+.. .+...+...++|+.|+++.+..
T Consensus 94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~ 144 (166)
T d1io0a_ 94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 144 (166)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence 2245566777776544 4566653 2344556777777777766644
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.06 E-value=0.00084 Score=60.78 Aligned_cols=42 Identities=21% Similarity=0.163 Sum_probs=21.2
Q ss_pred cCCCCCCCEEEccCCcccccCc----ccccCCCCCCeEeccCCccc
Q 003307 398 LGTYPELKVIDLSLNHLNGFLL----PSFFTSTKLTDLNLSGNNFS 439 (832)
Q Consensus 398 ~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~ 439 (832)
+...++|+.|++++|.++.... ..+...+.++.|++++|.++
T Consensus 42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~ 87 (166)
T d1io0a_ 42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 87 (166)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence 3445555666666655543211 22334455666666666554
|