Citrus Sinensis ID: 003315
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 831 | 2.2.26 [Sep-21-2011] | |||||||
| O81028 | 799 | Pentatricopeptide repeat- | yes | no | 0.903 | 0.939 | 0.418 | 1e-164 | |
| Q9LMH5 | 883 | Putative pentatricopeptid | no | no | 0.908 | 0.855 | 0.361 | 1e-138 | |
| Q9LFC5 | 729 | Pentatricopeptide repeat- | no | no | 0.738 | 0.842 | 0.265 | 7e-75 | |
| Q9FJE6 | 907 | Putative pentatricopeptid | no | no | 0.737 | 0.675 | 0.273 | 2e-70 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.756 | 0.848 | 0.271 | 7e-70 | |
| Q940A6 | 838 | Pentatricopeptide repeat- | no | no | 0.918 | 0.910 | 0.255 | 1e-68 | |
| P0C894 | 761 | Putative pentatricopeptid | no | no | 0.748 | 0.817 | 0.259 | 2e-68 | |
| Q9C6S6 | 840 | Putative pentatricopeptid | no | no | 0.706 | 0.698 | 0.268 | 2e-66 | |
| Q9FIT7 | 974 | Pentatricopeptide repeat- | no | no | 0.702 | 0.599 | 0.266 | 1e-64 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.878 | 0.797 | 0.251 | 2e-64 |
| >sp|O81028|PP171_ARATH Pentatricopeptide repeat-containing protein At2g26790, mitochondrial OS=Arabidopsis thaliana GN=At2g26790 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 580 bits (1496), Expect = e-164, Method: Compositional matrix adjust.
Identities = 327/782 (41%), Positives = 475/782 (60%), Gaps = 31/782 (3%)
Query: 65 SSVNNEHN--DEIKCSFSYLNTREVVEK-----LYSLRKEPKIALSFFEQLKRSGFSHNL 117
S++NN +N D + ++LN ++ + L S R +P +ALSF QLK G S N+
Sbjct: 30 SALNNPNNLSDSEQQQVNHLNLSKLTQHGLQRLLNSTRDDPNLALSFLRQLKEHGVSPNV 89
Query: 118 CTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEG-----STLLTRL 172
YA +VRIL G KL+S+L+EL+ K + F DLIE + + S +L R+
Sbjct: 90 NAYATLVRILTTWGLDIKLDSVLVELI-KNEERGFTVMDLIEVIGEQAEEKKRSFVLIRV 148
Query: 173 SDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLK 232
S A++KAYVS+GMFDE D+LFQ R V I +CN+ MN++ E GK+ M + +++ LK
Sbjct: 149 SGALVKAYVSLGMFDEATDVLFQSKRLDCVVDIKACNFLMNRMTEFGKIGMLMTLFKQLK 208
Query: 233 RLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLD 292
+LGL NEYTY IV+KALC+KG+++EA + +E E + F Y T I GLC+ G +
Sbjct: 209 QLGLCANEYTYAIVVKALCRKGNLEEAAMLLIENE------SVFGYKTFINGLCVTGETE 262
Query: 293 LGYELLL-----KWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYA 347
L+L K+ D + +V+R FC++ K++ AE V++ ME+ G DVYA
Sbjct: 263 KAVALILELIDRKYLAGDDLRAVLG--MVVRGFCNEMKMKAAESVIIEMEEIGFGLDVYA 320
Query: 348 YSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFK 407
A+I YCK + +AL +M KG+K NC ++S+IL+ C+ M +++F EF+
Sbjct: 321 CLAVIDRYCKNMNLPEALGFLDKMLGKGLKVNCVIVSLILQCYCKMDMCLEALEKFKEFR 380
Query: 408 DMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLG 467
DM FL++VCY+V D+L KLG VE+A L +EMKDR IVPDV+NYTT+I GYCLQGK+
Sbjct: 381 DMNIFLDRVCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVV 440
Query: 468 DALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMII 527
DALDL EM G PD+ITYNVL A+ G ++ ++ MK G +PN VT+++II
Sbjct: 441 DALDLIDEMIGNGMSPDLITYNVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVII 500
Query: 528 EGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKS 587
EGLC +V+EAE F L+ KC EN ++ + GYC+ G +K+A++ F+RL ++KS
Sbjct: 501 EGLCFARKVKEAEDFFSSLEQKCPENKASFVKGYCEAGLSKKAYKAFVRLEYP---LRKS 557
Query: 588 SCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVL 647
KL +L I A + K M EP +SM K+IGA C+ + +AQ++F+ +
Sbjct: 558 VYIKLFFSLCIEGYLEKAHDVLKKMSAYRVEPGRSMCGKMIGAFCKLNNVREAQVLFDTM 617
Query: 648 VDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLK 707
V++GL P L TYT+MIH YC++N L++A +F DMKQRGI PDVVTYTVL D + K++ +
Sbjct: 618 VERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLDRYLKLDPE 677
Query: 708 GSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEI 767
+ ++Q + AS E GI DV+ YTVLI + C NLE +F+ +
Sbjct: 678 HHETC--SVQGEVGKRKASEVLREFSAAGIGLDVVCYTVLIDRQCKMNNLEQAAELFDRM 735
Query: 768 SDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLERGIEKARIL 827
D GLEPD V YT L+ Y KG +D A+ LV E+S K + +++++ KA+
Sbjct: 736 IDSGLEPDMVAYTTLISSYFRKGYIDMAVTLVTELSKKYNIPSESFEAAVKSAALKAKRF 795
Query: 828 QY 829
QY
Sbjct: 796 QY 797
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LMH5|PPR42_ARATH Putative pentatricopeptide repeat-containing protein At1g13800 OS=Arabidopsis thaliana GN=At1g13800 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 492 bits (1267), Expect = e-138, Method: Compositional matrix adjust.
Identities = 295/815 (36%), Positives = 454/815 (55%), Gaps = 60/815 (7%)
Query: 62 LEESSVNNEHNDEIK-CSFSY----LNTREVVEKLYSLRKEPKIALSFFEQLKRSGFSHN 116
L +++ H++++K +F Y LN V+ L S++ +P +ALSF ++++ + +
Sbjct: 30 LARTNLTISHSEQVKEGTFDYKALELNDIGVLRVLNSMKDDPYLALSFLKRIEGNVTLPS 89
Query: 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDAN-FEATDLIEALCGE---GSTLLTRL 172
+ YA ++RI+C G KKL++ L ELVR+ + F DL++A+ GE LL R+
Sbjct: 90 VQAYATVIRIVCGWGLDKKLDTFLFELVRRGDEGRGFSVMDLLKAI-GEMEQSLVLLIRV 148
Query: 173 SDAMIKAYVSVGMFDEGIDILFQINRR-GFVWSICSCNYFMNQLVECGKVDMALAVYQHL 231
S A++KAY ++ MFDE IDI F+ G I + N+ +++++ G+ DM + + +
Sbjct: 149 STALVKAYANLDMFDEAIDIFFRAYYSLGRAPDIKALNFLISRMIASGRSDMVVGFFWEI 208
Query: 232 KRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGML 291
+RLGL + +TYV+V++AL + +E ++ + + Y IEGLC+N M
Sbjct: 209 ERLGLDADAHTYVLVVQALWRNDDKEELEKLLSRLLISETRNPCVFYLNFIEGLCLNQMT 268
Query: 292 DLGYELLLKWEEADIPLS----AFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYA 347
D+ Y LL +A+I + AY V+R C + ++E AE V+L MEK G+ PDVY
Sbjct: 269 DIAYFLLQPLRDANILVDKSDLGIAYRKVVRGLCYEMRIEDAESVVLDMEKHGIDPDVYV 328
Query: 348 YSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFK 407
YSA+I G+ K I KA+ + ++M K + NC ++S IL+ CQ G S F EF+
Sbjct: 329 YSAIIEGHRKNMNIPKAVDVFNKMLKKRKRINCVIVSSILQCYCQMGNFSEAYDLFKEFR 388
Query: 408 DMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLG 467
+ L++VCY+V D+L KLG+VE+A+ LF+EM + I PDV+NYTT+I G CLQGK
Sbjct: 389 ETNISLDRVCYNVAFDALGKLGKVEEAIELFREMTGKGIAPDVINYTTLIGGCCLQGKCS 448
Query: 468 DALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMII 527
DA DL EM G PDI+ YNVLAG A G Q+AF+ L M+ G++P +VTHNM+I
Sbjct: 449 DAFDLMIEMDGTGKTPDIVIYNVLAGGLATNGLAQEAFETLKMMENRGVKPTYVTHNMVI 508
Query: 528 EGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKS 587
EGL G +++AEAF + L+ K EN ++M+ G+C G AF+ F+RL + KS
Sbjct: 509 EGLIDAGELDKAEAFYESLEHKSRENDASMVKGFCAAGCLDHAFERFIRLE---FPLPKS 565
Query: 588 SCNKLITNLLILRDN-NNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNV 646
L T+L +D + A L M L EP KSMY KLIGA C+ + +A+ F +
Sbjct: 566 VYFTLFTSLCAEKDYISKAQDLLDRMWKLGVEPEKSMYGKLIGAWCRVNNVRKAREFFEI 625
Query: 647 LVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINL 706
LV K + P L TYT+MI+ YC++N ++A +F DMK+R + PDVVTY+VL ++ ++++
Sbjct: 626 LVTKKIVPDLFTYTIMINTYCRLNEPKQAYALFEDMKRRDVKPDVVTYSVLLNSDPELDM 685
Query: 707 KGSSSS----PDAL----------------------------QCKEDVVDASVFW----- 729
K + PD + + DVV +V
Sbjct: 686 KREMEAFDVIPDVVYYTIMINRYCHLNDLKKVYALFKDMKRREIVPDVVTYTVLLKNKPE 745
Query: 730 ----NEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCG 785
EMK ++PDV YTVLI C +L + +F+++ + G++PD YTAL+
Sbjct: 746 RNLSREMKAFDVKPDVFYYTVLIDWQCKIGDLGEAKRIFDQMIESGVDPDAAPYTALIAC 805
Query: 786 YLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLERG 820
G L A + D M G++ D ++L G
Sbjct: 806 CCKMGYLKEAKMIFDRMIESGVKPDVVPYTALIAG 840
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 282 bits (722), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 178/670 (26%), Positives = 321/670 (47%), Gaps = 56/670 (8%)
Query: 70 EHNDEIKCSFSYLNTREVVEKLYSLRKEPKIALSFFEQL--KRSGFSHNLCTYAAIVRIL 127
+ N+ ++ LN VVE LY R + + F +QL F H + +A++ IL
Sbjct: 64 QGNNNVRNHLIRLNPLAVVEVLYRCRNDLTLGQRFVDQLGFHFPNFKHTSLSLSAMIHIL 123
Query: 128 CCCGWQKKLESMLLELVRKKTDANFEATDLIEAL---CGEGSTLLTRLSDAMIKAYVSVG 184
G +S LL ++R+ + E + +++ CG ++ D +I+ YV
Sbjct: 124 VRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVF----DLLIRTYVQAR 179
Query: 185 MFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYV 244
E + + +GF SI +CN + LV G V++A VYQ + R G+ +N YT
Sbjct: 180 KLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLN 239
Query: 245 IVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEA 304
I++ ALCK G M++ ++++ GV P+ Y+T I G+++ +EL+
Sbjct: 240 IMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGK 299
Query: 305 DIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQG------------------------ 340
+ Y VI C K E+A+ V M + G
Sbjct: 300 GFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVET 359
Query: 341 -----------VVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKG 389
VVPD+ +S+++S + + G ++KAL+ + + G+ + + +++++G
Sbjct: 360 EKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQG 419
Query: 390 LCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCK---LGEVEKAMILFKEMKDRQI 446
C+KGM S + E G ++ V Y+ I+ LCK LGE +K LF EM +R +
Sbjct: 420 YCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADK---LFNEMTERAL 476
Query: 447 VPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFD 506
PD T +I G+C G L +A++LF++MKE + D++TYN L F + G + A +
Sbjct: 477 FPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKE 536
Query: 507 LLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENY----SAMINGYC 562
+ M + P +++++++ LC G + EA D + K ++ ++MI GYC
Sbjct: 537 IWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYC 596
Query: 563 KTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAE--PS 620
++G+ + ++ ++G + S N LI + + + A L K M P
Sbjct: 597 RSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPD 656
Query: 621 KSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFN 680
Y+ ++ C+ +M++A++V ++++G+ P TYT MI+G+ + L EA + +
Sbjct: 657 VFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHD 716
Query: 681 DMKQRGITPD 690
+M QRG +PD
Sbjct: 717 EMLQRGFSPD 726
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 267 bits (683), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 174/637 (27%), Positives = 314/637 (49%), Gaps = 24/637 (3%)
Query: 204 SICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVF 263
+I N ++ L + KV A+ + + L L + TY ++ LCK + +E+
Sbjct: 261 NIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMM 320
Query: 264 LEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQ 323
EM +P+ A S+ +EGL G ++ L+ + + + + F Y +I C
Sbjct: 321 DEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKG 380
Query: 324 NKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVL 383
K +AE + M K G+ P+ YS LI +C+ GK++ AL EM G+K +
Sbjct: 381 RKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPY 440
Query: 384 SVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKD 443
+ ++ G C+ G SA E + V Y ++ C G++ KA+ L+ EM
Sbjct: 441 NSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTG 500
Query: 444 RQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQK 503
+ I P + +TT++ G G + DA+ LF EM E KP+ +TYNV+ + + G + K
Sbjct: 501 KGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSK 560
Query: 504 AFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGL-KGKCLEN---YSAMIN 559
AF+ L M G+ P+ ++ +I GLC+ G+ EA+ F+DGL KG C N Y+ +++
Sbjct: 561 AFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLH 620
Query: 560 GYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEP 619
G+C+ G +EA + + +GV + LI L +D L K M +P
Sbjct: 621 GFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKP 680
Query: 620 SKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVF 679
+Y +I A + + ++A ++++++++G P+ VTYT +I+G CK + EA +
Sbjct: 681 DDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLC 740
Query: 680 NDMKQRGITPDVVTYTVLFDAHSK--INLKGSSSSPDALQ-----------------CKE 720
+ M+ P+ VTY D +K ++++ + +A+ C++
Sbjct: 741 SKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQ 800
Query: 721 DVVD-ASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTY 779
++ AS M G+ PD I+YT +I +LC +++ I ++N ++++G+ PD V Y
Sbjct: 801 GRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAY 860
Query: 780 TALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSS 816
L+ G G++ +A L +EM +G+ ++ T +
Sbjct: 861 NTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKTSRT 897
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 266 bits (679), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 177/651 (27%), Positives = 315/651 (48%), Gaps = 22/651 (3%)
Query: 76 KCSFSYLNTREVVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKK 135
+C F T ++ L ++ + ++ L FF+ RS NL + ++ + K
Sbjct: 82 ECKF---KTDHLIWVLMKIKCDYRLVLDFFD-WARSRRDSNLESLCIVIHLAVASKDLKV 137
Query: 136 LESMLLELVRKK----TDANFEATDLIEALCGE-GSTLLTRLSDAMIKAYVSVGMFDEGI 190
+S++ + TD+ + DL+ + GS R+ D + V G+ E
Sbjct: 138 AQSLISSFWERPKLNVTDSFVQFFDLLVYTYKDWGSD--PRVFDVFFQVLVDFGLLREAR 195
Query: 191 DILFQINRRGFVWSICSCNYFMNQLV-ECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA 249
+ ++ G V S+ SCN ++ +L +C K A+ V++ +G+ N +Y IVI
Sbjct: 196 RVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHF 255
Query: 250 LCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLS 309
+C+ G ++EA + L ME G TP+ +YST + G C G LD ++L+ + + +
Sbjct: 256 VCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPN 315
Query: 310 AFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHH 369
++ Y +I C KL +AE M +QG++PD Y+ LI G+CK G I A +
Sbjct: 316 SYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFY 375
Query: 370 EMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLG 429
EM S+ I + + I+ G CQ G K F E G + V + +++ CK G
Sbjct: 376 EMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAG 435
Query: 430 EVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYN 489
++ A + M P+VV YTT+I G C +G L A +L EM ++G +P+I TYN
Sbjct: 436 HMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYN 495
Query: 490 VLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGK 549
+ + G +++A L+ + GL + VT+ +++ C G +++A+ L + GK
Sbjct: 496 SIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGK 555
Query: 550 CLE----NYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNA 605
L+ ++ ++NG+C G ++ +L + +G+ ++ N L+ I + A
Sbjct: 556 GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAA 615
Query: 606 LKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHG 665
++K M + P Y+ L+ C+A M++A +F + KG + + TY+++I G
Sbjct: 616 TAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKG 675
Query: 666 YCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDAL 716
+ K EAR+VF+ M++ G+ D +FD S KG PD +
Sbjct: 676 FLKRKKFLEAREVFDQMRREGLAAD----KEIFDFFSDTKYKG--KRPDTI 720
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 261 bits (668), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 205/802 (25%), Positives = 362/802 (45%), Gaps = 39/802 (4%)
Query: 26 AAKLFPFRQYIKHVQLIPSRS--VSALAHLRLICSDSELEESSVNNEHNDEIKCSFSYLN 83
+ K F +Y++ P +S S+ HL S S L + S++ E ++ S L
Sbjct: 47 SRKCFHTSRYLQQCVHRPDKSEETSSDRHLHERLS-SVLSKRSLDYEQCKQLITVLSPLE 105
Query: 84 TREVVEKLYSLRKEPKIALSFFE-QLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLE 142
+ + S + PK AL FF FS +L +Y ++ +L +L+
Sbjct: 106 FDRLFPEFRS-KVNPKTALDFFRLASDSFSFSFSLRSYCLLIGLLLDANLLSAARVVLIR 164
Query: 143 LVRKKT--------DANFEATDLIEAL--CGEGSTLLTRLSDAMIKAYVSVGMFDE---G 189
L+ D+ D + +L C + + ++SD +I+ Y + D
Sbjct: 165 LINGNVPVLPCGLRDSRVAIADAMASLSLCFD-EEIRRKMSDLLIEVYCTQFKRDGCYLA 223
Query: 190 IDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA 249
+D+ + +G S +CN + LV + + + + G+S + Y + I A
Sbjct: 224 LDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTAINA 282
Query: 250 LCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLS 309
CK G ++EAV++F +ME+AGV PN ++T I+GL M G D + K E + +
Sbjct: 283 FCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPT 342
Query: 310 AFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHH 369
Y+++++ ++ A VL M K+G P+V Y+ LI + + G +NKA+ +
Sbjct: 343 LITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKD 402
Query: 370 EMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLG 429
M SKG+ + ++KG C+ G A + E +GF +N+ + ++ LC
Sbjct: 403 LMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHL 462
Query: 430 EVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYN 489
+ A+ EM R + P TT+I G C GK AL+L+ + G D T N
Sbjct: 463 MFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSN 522
Query: 490 VLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGK 549
L + G + +AF + + G + V++N +I G C +++EA FLD + +
Sbjct: 523 ALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKR 582
Query: 550 CLE----NYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNA 605
L+ YS +I G +EA Q + G+L + + +I
Sbjct: 583 GLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEG 642
Query: 606 LKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHG 665
+ F M++ N +P+ +Y+ LI A C++ + A + + KG++P+ TYT +I G
Sbjct: 643 QEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKG 702
Query: 666 YCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDA 725
I+ + EA+ +F +M+ G+ P+V YT L D + K+ +V
Sbjct: 703 MSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLG---------------QMVKV 747
Query: 726 SVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCG 785
EM + P+ I+YTV+I N+ + + NE+ ++G+ PD++TY + G
Sbjct: 748 ECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYG 807
Query: 786 YLAKGDLDRAIALVDEMSVKGI 807
YL +G + A DE + I
Sbjct: 808 YLKQGGVLEAFKGSDEENYAAI 829
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 261 bits (667), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 187/720 (25%), Positives = 325/720 (45%), Gaps = 98/720 (13%)
Query: 87 VVEKLYSLRKEPKIALSFFE-QLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVR 145
V L L+++PK+A FF+ + R+GF H++ +Y + IL C S+L E+V
Sbjct: 111 VPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVL 170
Query: 146 KKTDAN-FEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWS 204
K D + F+ +C G + DA+ + +GM +E I ++ R
Sbjct: 171 SKADCDVFDVLWSTRNVCVPGFGVF----DALFSVLIDLGMLEEAIQCFSKMKRFRVFPK 226
Query: 205 ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFL 264
SCN +++ + GK D ++ + G +TY I+I +CK+G ++ A +F
Sbjct: 227 TRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFE 286
Query: 265 EMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQN 324
EM+ G+ P+ Y++ I+G F
Sbjct: 287 EMKFRGLVPDTVTYNSMIDG-----------------------------------FGKVG 311
Query: 325 KLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLS 384
+L+ C M+ PDV Y+ALI+ +CKFGK+ L + EM G+K N S
Sbjct: 312 RLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYS 371
Query: 385 VILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDR 444
++ C++GM IK +++ + +G N+ Y ++D+ CK+G + A L EM
Sbjct: 372 TLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQV 431
Query: 445 QIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKA 504
+ +VV YT +I G C ++ +A +LF +M G P++ +YN L F + + +A
Sbjct: 432 GVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRA 491
Query: 505 FDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLD-----GLKGKCLENYSAMIN 559
+LLN +K G++P+ + + I GLC ++E A+ ++ G+K L Y+ +++
Sbjct: 492 LELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLI-YTTLMD 550
Query: 560 GYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEP 619
Y K+G+ E L L M L+ E
Sbjct: 551 AYFKSGNPTE-----------------------------------GLHLLDEMKELDIEV 575
Query: 620 SKSMYDKLIGALCQAEEMEQAQLVFNVLV-DKGLTPHLVTYTMMIHGYCKINCLREARDV 678
+ + LI LC+ + + +A FN + D GL + +T MI G CK N + A +
Sbjct: 576 TVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTL 635
Query: 679 FNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIR 738
F M Q+G+ PD YT L D + K + +V++A ++M E+G++
Sbjct: 636 FEQMVQKGLVPDRTAYTSLMDGNFK---------------QGNVLEALALRDKMAEIGMK 680
Query: 739 PDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIAL 798
D+++YT L+ L + L+ + E+ G+ PD V ++L + G +D A+ L
Sbjct: 681 LDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVEL 740
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C6S6|PPR67_ARATH Putative pentatricopeptide repeat-containing protein At1g31840 OS=Arabidopsis thaliana GN=At1g31840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 254 bits (650), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 171/636 (26%), Positives = 292/636 (45%), Gaps = 49/636 (7%)
Query: 184 GMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTY 243
G + +D + RGF I SCN + L ++++A + + G + N T+
Sbjct: 231 GEVTKALDFHRLVMERGFRVGIVSCNKVLKGL-SVDQIEVASRLLSLVLDCGPAPNVVTF 289
Query: 244 VIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEE 303
+I CK+G M A ++F ME+ G+ P+ AYST I+G GML +G++L +
Sbjct: 290 CTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALH 349
Query: 304 ADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINK 363
+ L ++ I + L A V M QG+ P+V Y+ LI G C+ G+I +
Sbjct: 350 KGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYE 409
Query: 364 ALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVD 423
A ++ ++ +G++ + S ++ G C+ G + + + MG+ + V Y V+VD
Sbjct: 410 AFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVD 469
Query: 424 SLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKP 483
L K G + AM +M + I +VV + ++I G+C + +AL +F+ M G KP
Sbjct: 470 GLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKP 529
Query: 484 DIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFL 543
D+ T+ + G +++A L M + GLEP+ +
Sbjct: 530 DVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALA--------------------- 568
Query: 544 DGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNN 603
Y +I+ +CK QLF + + + CN +I L
Sbjct: 569 ----------YCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIE 618
Query: 604 NALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMI 663
+A K F +I EP Y+ +I C +++A+ +F +L P+ VT T++I
Sbjct: 619 DASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILI 678
Query: 664 HGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSK-INLKGSSSSPDALQCKEDV 722
H CK N + A +F+ M ++G P+ VTY L D SK ++++GS
Sbjct: 679 HVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFK----------- 727
Query: 723 VDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTAL 782
+ EM+E GI P ++SY+++I LC +++ +F++ D L PD V Y L
Sbjct: 728 -----LFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAIL 782
Query: 783 LCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLE 818
+ GY G L A L + M G++ DD + +L
Sbjct: 783 IRGYCKVGRLVEAALLYEHMLRNGVKPDDLLQRALS 818
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (634), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 166/622 (26%), Positives = 302/622 (48%), Gaps = 38/622 (6%)
Query: 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGS 255
IN + +++ C C + + G ++ A A++ + GL Y +I+ C++ +
Sbjct: 343 INIKPYMYDCCIC-----VMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKN 397
Query: 256 MQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTV 315
+++ E+ +EM+K + + + Y T ++G+C +G LD Y ++ + + + YT
Sbjct: 398 VRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTT 457
Query: 316 VIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKG 375
+I+ F ++ A VL M++QG+ PD++ Y++LI G K ++++A EM G
Sbjct: 458 LIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENG 517
Query: 376 IKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAM 435
+K N + G + ++ K E ++ G NKV +++ CK G+V +A
Sbjct: 518 LKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEAC 577
Query: 436 ILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAF 495
++ M D+ I+ D YT ++ G K+ DA ++F+EM+ G PD+ +Y VL F
Sbjct: 578 SAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGF 637
Query: 496 AQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLE--- 552
++ G +QKA + + M GL PN + +NM++ G C G +E+A+ LD + K L
Sbjct: 638 SKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNA 697
Query: 553 -NYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKT 611
Y +I+GYCK+G EAF+LF + +G++ L+ L D A+ +F T
Sbjct: 698 VTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGT 757
Query: 612 MITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGL----TPHLVTYTMMIHGYC 667
S + ++ LI + + + E V N L+D P+ VTY +MI C
Sbjct: 758 N-KKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLC 816
Query: 668 KINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASV 727
K L A+++F+ M+ + P V+TYT L + + K+ + A +
Sbjct: 817 KEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRR-----------------AEM 859
Query: 728 F--WNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEI-----SDRGLEPDTVTYT 780
F ++E GI PD I Y+V+I + + +++ D G + T
Sbjct: 860 FPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCR 919
Query: 781 ALLCGYLAKGDLDRAIALVDEM 802
ALL G+ G+++ A +++ M
Sbjct: 920 ALLSGFAKVGEMEVAEKVMENM 941
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (632), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 202/802 (25%), Positives = 353/802 (44%), Gaps = 72/802 (8%)
Query: 88 VEKLYSLRKEPKIALSFFEQLKRSG-FSHNLCTYAAIVRILCCCGWQ-----------KK 135
V L+SL +PK AL+F + ++ + H++ +YA+++ +L G+ K
Sbjct: 93 VSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKS 152
Query: 136 LESM-----LLELVRK-KTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEG 189
+S+ +L+L RK D FE + + G +TLL L+ G+ DE
Sbjct: 153 CDSVGDALYVLDLCRKMNKDERFELK--YKLIIGCYNTLLNSLA--------RFGLVDEM 202
Query: 190 IDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA 249
+ ++ +I + N +N + G V+ A + GL + +TY +I
Sbjct: 203 KQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMG 262
Query: 250 LCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLS 309
C++ + A +VF EM G N AY+ I GLC+ +D +L +K ++ + +
Sbjct: 263 YCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPT 322
Query: 310 AFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHH 369
YTV+I+ C + +A ++ ME+ G+ P+++ Y+ LI C K KA L
Sbjct: 323 VRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLG 382
Query: 370 EMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLG 429
+M KG+ N + ++ G C++GM + + N Y+ ++ CK
Sbjct: 383 QMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-S 441
Query: 430 EVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYN 489
V KAM + +M +R+++PDVV Y ++I G C G A L M + G PD TY
Sbjct: 442 NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYT 501
Query: 490 VLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGK 549
+ + + V++A DL + +++ G+ PN V + +I+G C G+V+EA L+ + K
Sbjct: 502 SMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSK 561
Query: 550 -CLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNA 605
CL N ++A+I+G C G KEA L ++ G+ S+ LI LL D ++A
Sbjct: 562 NCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHA 621
Query: 606 LKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHG 665
F+ M++ +P Y I C+ + A+ + + + G++P L TY+ +I G
Sbjct: 622 YSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKG 681
Query: 666 YCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINL---KGSSSSPDALQCKEDV 722
Y + A DV M+ G P T+ L ++ KGS A+ +
Sbjct: 682 YGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEF 741
Query: 723 VDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEIS-DRGLEPDTVTYTA 781
+M E + P+ SY LI +C NL VF+ + + G+ P + + A
Sbjct: 742 DTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNA 801
Query: 782 LL-----------------------------------CGYLAKGDLDRAIALVDEMSVKG 806
LL CG KG+ +R ++ + G
Sbjct: 802 LLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCG 861
Query: 807 IQGDDYTKSSLERGIEKARILQ 828
D+ + G+ K +++
Sbjct: 862 YYEDELAWKIIIDGVGKQGLVE 883
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 831 | ||||||
| 255546727 | 809 | pentatricopeptide repeat-containing prot | 0.954 | 0.980 | 0.544 | 0.0 | |
| 225464790 | 817 | PREDICTED: pentatricopeptide repeat-cont | 0.973 | 0.990 | 0.539 | 0.0 | |
| 255569835 | 913 | pentatricopeptide repeat-containing prot | 0.894 | 0.813 | 0.505 | 0.0 | |
| 296087527 | 727 | unnamed protein product [Vitis vinifera] | 0.807 | 0.922 | 0.491 | 0.0 | |
| 356513749 | 819 | PREDICTED: pentatricopeptide repeat-cont | 0.901 | 0.914 | 0.465 | 0.0 | |
| 224076898 | 800 | predicted protein [Populus trichocarpa] | 0.877 | 0.911 | 0.463 | 0.0 | |
| 449505420 | 795 | PREDICTED: pentatricopeptide repeat-cont | 0.882 | 0.922 | 0.460 | 0.0 | |
| 449458001 | 920 | PREDICTED: pentatricopeptide repeat-cont | 0.880 | 0.795 | 0.459 | 0.0 | |
| 357463937 | 946 | Pentatricopeptide repeat-containing prot | 0.894 | 0.785 | 0.417 | 1e-170 | |
| 297825903 | 797 | pentatricopeptide repeat-containing prot | 0.903 | 0.942 | 0.426 | 1e-165 |
| >gi|255546727|ref|XP_002514422.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223546418|gb|EEF47918.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 887 bits (2293), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/801 (54%), Positives = 584/801 (72%), Gaps = 8/801 (0%)
Query: 22 MWVLAAKLFPFRQYIKHVQLIPSRSVSALAHLRLICSDSELEESSVNNEHNDEIKCSFSY 81
MWV + KLF R+YIKHV I +VSALAH EE ++N + + +
Sbjct: 1 MWVSSIKLFSCRKYIKHVNFIRLYTVSALAHFNYPIE----EEQTINTHYQNPVTNHLFE 56
Query: 82 LNTREVVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLL 141
+NT +VV L +LR EP +A S+F QLK SG+SH+ TYAAIVRILC GW +KL+S+L+
Sbjct: 57 INTAKVVITLNNLRNEPSLAFSYFNQLKESGYSHDPYTYAAIVRILCFWGWSRKLDSILM 116
Query: 142 ELVRKKTDANFEATDLIEAL----CGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQIN 197
E+++K + +F +L EAL E ++L ++SDA+IK V+ GMFD+ D+L Q
Sbjct: 117 EIIKKDGNLDFGIVNLFEALGDGIANESFSVLVQVSDALIKVCVASGMFDQAFDVLLQTK 176
Query: 198 RRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQ 257
GF I SCN+ MN+LVE KVDMA+A+Y+ LK GL+ N+YTY I IK C+KG++
Sbjct: 177 HCGFAPQILSCNFLMNRLVESRKVDMAIAIYRQLKAFGLNPNDYTYTIAIKGFCRKGNLA 236
Query: 258 EAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVI 317
EA++VF +ME++GVTPN+F+Y+T IEGLC++G DLG+++L A IP+ FAYTVVI
Sbjct: 237 EAIDVFRDMEESGVTPNSFSYTTFIEGLCLHGRSDLGFKVLQDVINAKIPMDVFAYTVVI 296
Query: 318 RWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIK 377
R FC + KL++AE +L MEKQG PDVY Y ALISGYC G + KAL LH EM SKG+K
Sbjct: 297 RGFCSEMKLKEAESILREMEKQGFAPDVYVYCALISGYCMVGNLLKALALHDEMVSKGVK 356
Query: 378 TNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMIL 437
TNC +LS IL+GL Q GMAS QF EFK MG F ++ CY+V++D+LCKLG+VE+A+ L
Sbjct: 357 TNCVILSSILQGLSQMGMASEVANQFKEFKKMGIFFDEACYNVVMDALCKLGKVEEAVEL 416
Query: 438 FKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQ 497
EMK +++VPD++NYTT+I GY L+GK+ DAL++++EMK++GHKPDI+TYNVLAG F++
Sbjct: 417 LVEMKGKKMVPDIINYTTVISGYFLKGKVVDALNIYREMKDIGHKPDIVTYNVLAGGFSR 476
Query: 498 YGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAM 557
G Q+A LLNYM+ G++P+ VTHNMIIEGLC+GG+V++A+AF D L+ KCLENYSAM
Sbjct: 477 NGLTQEALSLLNYMETQGVKPDTVTHNMIIEGLCIGGKVDDAQAFFDNLEEKCLENYSAM 536
Query: 558 INGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNA 617
+NGYC+ H +AF L +RLS QG ++KK+S KL+ NL D+ AL L +TM+ LN
Sbjct: 537 VNGYCEANHVNKAFALLIRLSKQGRILKKASFFKLLGNLCSEGDSEKALCLLETMVALNI 596
Query: 618 EPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARD 677
P+ MY K+IGAL QA EME+AQ VFN+LVD+GL P ++TYT+MI+GYC++N ++EA
Sbjct: 597 NPTMIMYSKVIGALFQAGEMEKAQYVFNMLVDRGLAPDVITYTIMINGYCRMNKMKEAWH 656
Query: 678 VFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGI 737
V DMK RGI PDV+TYTVL + SKI+L+ SSSS DA++ KE+++D S W+EMK+M I
Sbjct: 657 VLGDMKNRGIEPDVITYTVLLNNCSKIDLRSSSSSLDAMKSKENMMDPSALWSEMKDMDI 716
Query: 738 RPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIA 797
+PDVI YTVLI K C T N++D I +FNE+ DRGL PDTVTYTALL GY G++ +A+
Sbjct: 717 KPDVICYTVLIDKHCKTNNIQDAINLFNEMIDRGLAPDTVTYTALLSGYCNVGNIKKAVV 776
Query: 798 LVDEMSVKGIQGDDYTKSSLE 818
L DEM KGI+ D +T S L
Sbjct: 777 LFDEMLNKGIRPDAHTMSVLH 797
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225464790|ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790, mitochondrial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 885 bits (2287), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/817 (53%), Positives = 591/817 (72%), Gaps = 8/817 (0%)
Query: 22 MWVLAAKLFPFRQYIKHVQLIPSRSVSALAHLRLICSDSELEESSVNNEHNDEIKCSFSY 81
MWV + + R++I HVQL SV LAHL EE +V D + F
Sbjct: 1 MWVSSTRWVSCRKFITHVQLTRFNSVWGLAHLSPAAQYPIAEEQAVYTYSKDSVGDRFID 60
Query: 82 LNTREVVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLL 141
LNT VVE Y+L+ EP +A SFF QLK SGF HN+ TYAA++R+LC ++KL+S+L
Sbjct: 61 LNTSRVVEIFYNLKNEPNLAWSFFTQLKESGFQHNVDTYAALIRVLCRWRLERKLQSLLS 120
Query: 142 ELV-RKKTDANFEATDLIEAL-------CGEGSTLLTRLSDAMIKAYVSVGMFDEGIDIL 193
E+V K++ F+ T L + L GE S++L + D ++KAYV VGMFDE ID L
Sbjct: 121 EIVGSKESVLGFDITALFDVLREGGGEVEGEHSSVLILVLDMLVKAYVRVGMFDEAIDAL 180
Query: 194 FQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKK 253
FQ RRGFV I SCN+ MN+L+E GK+DMA+A+Y+HLKRLGL+ N+YTY I IKALC+K
Sbjct: 181 FQTKRRGFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRK 240
Query: 254 GSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAY 313
G+ +EAV+VF EME+AGV PNA ST IEGLC + DLGYE L A+ P+ FAY
Sbjct: 241 GNFEEAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAY 300
Query: 314 TVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTS 373
T VIR FC + KL++AE V + M +G+ PD Y Y ALI YCK G + +A+ LH++M S
Sbjct: 301 TAVIRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVS 360
Query: 374 KGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEK 433
GIKTNC ++S IL+ LC+ GMAS + QF EF+D G FL++V Y+++VD+LCKLG+VE+
Sbjct: 361 NGIKTNCVIVSSILQCLCEMGMASEVVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEE 420
Query: 434 AMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAG 493
A+ L EMK R++ DVV+YTT+I GYCLQGKL DA ++F+EMKE G +PDI+TYN+L G
Sbjct: 421 AVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVG 480
Query: 494 AFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN 553
F++ G ++A +LL+ + GL+PN THN IIEGLCM G+V+EAEAFL+ L+ KCLEN
Sbjct: 481 GFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEAEAFLNTLEDKCLEN 540
Query: 554 YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMI 613
YSAM++GYCK T++A++LF RLS QG+LVKK SC KL+++L + + + AL L + M+
Sbjct: 541 YSAMVDGYCKANFTRKAYELFSRLSKQGILVKKKSCFKLLSSLCMEGEYDKALILLERML 600
Query: 614 TLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLR 673
L+ EP++ MY KLIGA C+ +M++AQLVF++LV++G+TP ++TYTMMI+GYC++NCLR
Sbjct: 601 ALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLR 660
Query: 674 EARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMK 733
EARD+FNDMK+RGI PDV+TYTV+ D HSK+NLK + S + +E+ +DAS FW+EMK
Sbjct: 661 EARDIFNDMKERGIKPDVITYTVVLDGHSKVNLKMARSLQFSKGSEEEKMDASPFWSEMK 720
Query: 734 EMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLD 793
EMGI+PDV+ YTVLI C T NL+D I +++E+ RGL+PD VTYTALL ++GD+D
Sbjct: 721 EMGIKPDVVCYTVLIDSHCKTNNLQDAINLYDEMIARGLQPDIVTYTALLSSCCSRGDMD 780
Query: 794 RAIALVDEMSVKGIQGDDYTKSSLERGIEKARILQYR 830
RAI LV+EMS KGI+ D S L RGI KAR +Q+R
Sbjct: 781 RAITLVNEMSFKGIEPDSRAMSVLHRGILKARKVQFR 817
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255569835|ref|XP_002525881.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223534795|gb|EEF36485.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/758 (50%), Positives = 529/758 (69%), Gaps = 15/758 (1%)
Query: 82 LNTREVVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLL 141
L++ +VV+ LY+L+ +P ALSFF QLK SGF H++ TYAAI+RILC G K+L S+ L
Sbjct: 64 LDSFKVVDILYNLKNQPISALSFFNQLKDSGFKHDISTYAAIIRILCYWGLHKQLRSIFL 123
Query: 142 ELVR---KKTDANFEATDLIEALCG--------EGSTLLTRLSDAMIKAYVSVGMFDEGI 190
+++ D FE + ++ L + S ++++ DA++KAYVSVGMFD+ I
Sbjct: 124 DIIYVSCNDNDTPFEISHFLDTLSDGFVDVDSKKQSLFMSKVYDALVKAYVSVGMFDDAI 183
Query: 191 DILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKAL 250
D+LFQ+ RR FV I CN+ MN L++ K+DMALAVY+ LKRLGLS N+YTY IVIKAL
Sbjct: 184 DVLFQMGRRRFVPHIFICNFLMNSLIKNSKLDMALAVYKQLKRLGLSPNDYTYAIVIKAL 243
Query: 251 CKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSA 310
C GS++EA+ V EME++G+TP FAY+ IEGLC+N M DLGY++L W+ A+IPL
Sbjct: 244 CINGSLEEAMYVIKEMEESGITPTGFAYTAYIEGLCVNEMSDLGYQVLQAWKGANIPLDM 303
Query: 311 FAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHE 370
+AYTV +R FC++ K +KAE VL MEK+G+VPD++ Y+ALI +CK G + KA +E
Sbjct: 304 YAYTVAVRGFCNELKFDKAESVLRDMEKEGMVPDMHCYTALICRFCKAGNLLKAYAFLNE 363
Query: 371 MTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGE 430
M SKG+K NC ++ IL LC+ GM S + QF +FK +G FL+ V Y+ +VD+LCKLG+
Sbjct: 364 MMSKGVKVNCVIVGSILHCLCELGMHSEVVDQFNQFKSLGLFLDGVSYNNVVDALCKLGK 423
Query: 431 VEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNV 490
+E+A+ L EMK +QI DV++YTT+I GYC QG + DA +F+EM+E G + D++TY+V
Sbjct: 424 LEEAITLLDEMKMKQINMDVMHYTTLINGYCCQGNVVDAFKVFEEMRENGIEIDVVTYDV 483
Query: 491 LAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKC 550
L F + G +A +LL+YM+ L+PN +T+N+++E LCMGG+V+EAEA + ++ K
Sbjct: 484 LVSGFCRNGLATEALNLLDYMQTQKLKPNSITYNVVVESLCMGGKVKEAEAVFNSIEDKS 543
Query: 551 LENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFK 610
L+NY AMINGYCK HT A +LF RLS +G VK+S C L+ NL DN+ L L +
Sbjct: 544 LDNYFAMINGYCKANHTAGAAKLFFRLSVKG-HVKRSCCYNLLKNLCEEGDNDGILMLLE 602
Query: 611 TMITLNAEPSKSMYDKLIGALCQ---AEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYC 667
TM+ LN EPSK +Y KL +LC+ A M +AQ VF++L+ +G TP L+ YT+MI YC
Sbjct: 603 TMLNLNVEPSKFIYGKLFTSLCRAGGAAGMRKAQSVFDMLLKRGWTPDLIAYTIMITSYC 662
Query: 668 KINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASV 727
++NCL+EA D+F+DMKQRGI PD+VT+TVL D H K ++K S+ +A ED+ DA
Sbjct: 663 RMNCLKEAVDLFHDMKQRGIKPDLVTFTVLLDGHHKAHIKKVYSAANAKGGNEDIFDALA 722
Query: 728 FWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYL 787
W EMK+ I+PDVI YTVLI C +L D I VF+E+ +RGLEPD +TYTALL G
Sbjct: 723 IWTEMKDTEIKPDVIFYTVLIDGYCKVDSLHDAIGVFDEMIERGLEPDIITYTALLSGCC 782
Query: 788 AKGDLDRAIALVDEMSVKGIQGDDYTKSSLERGIEKAR 825
+GD+DRA+ L+D+MS+KGI D T S+L GI K R
Sbjct: 783 QRGDVDRAVNLLDQMSLKGISPDTRTMSALLHGILKTR 820
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296087527|emb|CBI34116.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/740 (49%), Positives = 491/740 (66%), Gaps = 69/740 (9%)
Query: 22 MWVLAAKLFPFRQYIKHVQLIPSRSVSALAHLRLICSDSELEESSVNNEHNDEIKCSFSY 81
MWV + + R++I HVQL SV LAHL EE +V D + F
Sbjct: 1 MWVSSTRWVSCRKFITHVQLTRFNSVWGLAHLSPAAQYPIAEEQAVYTYSKDSVGDRFID 60
Query: 82 LNTREVVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLL 141
LNT VVE Y+L+ EP +A SFF QLK SGF HN+ TYAA++R+LC ++KL+S+L
Sbjct: 61 LNTSRVVEIFYNLKNEPNLAWSFFTQLKESGFQHNVDTYAALIRVLCRWRLERKLQSLLS 120
Query: 142 ELV-RKKTDANFEATDLIEAL-------CGEGSTLLTRLSDAMIKAYVSVGMFDEGIDIL 193
E+V K++ F+ T L + L GE S++L + D ++KAYV VGMFDE ID L
Sbjct: 121 EIVGSKESVLGFDITALFDVLREGGGEVEGEHSSVLILVLDMLVKAYVRVGMFDEAIDAL 180
Query: 194 FQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKK 253
FQ RRGFV I SCN+ MN+L+E GK+DMA+A+Y+HLKRLGL+ N+YTY I IKALC+K
Sbjct: 181 FQTKRRGFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRK 240
Query: 254 GSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAY 313
G+ +EAV+VF EME+AGV PNA ST IEGLC + DLGYE L A+ P+ FAY
Sbjct: 241 GNFEEAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAY 300
Query: 314 TVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTS 373
T VIR FC + KL++AE V + M +G+ PD Y Y ALI YCK G + +A+ LH++M S
Sbjct: 301 TAVIRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVS 360
Query: 374 KGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEK 433
GIKTN + QF EF+D G FL++V Y+++VD+LCKLG+VE+
Sbjct: 361 NGIKTNL-------------------VDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEE 401
Query: 434 AMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAG 493
A+ L EMK R++ DVV+YTT+I GYCLQGKL DA ++F+EMKE G +PDI+TYN+L G
Sbjct: 402 AVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVG 461
Query: 494 AFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN 553
F++ G ++A +LL+ + GL+PN THN IIEGLCM G+V+EAEAFL+ L+ KCLEN
Sbjct: 462 GFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEAEAFLNTLEDKCLEN 521
Query: 554 YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMI 613
YSAM++GYCK T++A++LF RLS QG+L M+
Sbjct: 522 YSAMVDGYCKANFTRKAYELFSRLSKQGIL---------------------------RML 554
Query: 614 TLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLR 673
L+ EP++ MY KLIGA C+ +M++AQLVF++LV++G+TP ++TYTMMI+GYC++NCLR
Sbjct: 555 ALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLR 614
Query: 674 EARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMK 733
EARD+FNDMK+RGI PDV+TYTV+ D HSK N ++ DA ++EM
Sbjct: 615 EARDIFNDMKERGIKPDVITYTVVLDGHSKTN---------------NLQDAINLYDEMI 659
Query: 734 EMGIRPDVISYTVLIAKLCN 753
G++PD+++YT L+ CN
Sbjct: 660 ARGLQPDIVTYTALLPGKCN 679
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513749|ref|XP_003525573.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/758 (46%), Positives = 509/758 (67%), Gaps = 9/758 (1%)
Query: 80 SYLNTREVVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESM 139
S +T +V++ L+ L P ALSFF L+ +GFSH + TYAAI++IL Q++L+++
Sbjct: 63 SSFSTFDVLQTLHHLHNNPSHALSFFTHLRHTGFSHTISTYAAIIKILSFWNLQRQLDTL 122
Query: 140 LLELV-RKKTDANFEATDLIEALCGEGST------LLTRLSDAMIKAYVSVGMFDEGIDI 192
L L+ R F +L E L + +T L R + +K VS+ MFD+ ID
Sbjct: 123 FLHLINRDHPPLPFPLLNLFETLFQDFNTSHKNNYFLLRAFNGFVKTCVSLNMFDKAIDF 182
Query: 193 LFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK 252
LFQ RRG + + +CN+ N+LVE G+VD ALAVY+ LKR G N YTY IVIKALCK
Sbjct: 183 LFQTRRRGILPDVLTCNFLFNRLVEHGEVDKALAVYEQLKRFGFIPNCYTYAIVIKALCK 242
Query: 253 KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFA 312
KG +++ + VF EME+ GV P+++ ++ IEGLC N DLGYE+L + + + PL +A
Sbjct: 243 KGDLKQPLCVFEEMERVGVIPHSYCFAAYIEGLCNNHRSDLGYEVLQAFRKGNAPLEVYA 302
Query: 313 YTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMT 372
YT V+R FC++ KL++A+ V ME+QGVVPDVY YS+LI GYCK + +AL LH EM
Sbjct: 303 YTAVVRGFCNEMKLDEAQGVFDDMERQGVVPDVYVYSSLIHGYCKSHNLLRALALHDEMI 362
Query: 373 SKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVE 432
S+G+KTNC V+S IL L + GM + QF E K+ G FL+ V Y+++ D+LC LG+VE
Sbjct: 363 SRGVKTNCVVVSCILHCLGEMGMTLEVVDQFKELKESGMFLDGVAYNIVFDALCMLGKVE 422
Query: 433 KAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLA 492
A+ + +EMK +++ DV +YTT+I GYCLQG L A ++FKEMKE G KPDI+TYNVLA
Sbjct: 423 DAVEMVEEMKSKRLGLDVKHYTTLINGYCLQGDLVTAFNMFKEMKEKGLKPDIVTYNVLA 482
Query: 493 GAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLE 552
++ G ++ LL++M+ G++PN TH MIIEGLC GG+V EAE + + L+ K +E
Sbjct: 483 AGLSRNGHARETVKLLDFMESQGMKPNSTTHKMIIEGLCSGGKVLEAEVYFNSLEDKNIE 542
Query: 553 NYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTM 612
YSAM+NGYC+T K+++++F++L NQG + KK+SC KL++ L + D A+KL M
Sbjct: 543 IYSAMVNGYCETDLVKKSYEVFLKLLNQGDMAKKASCFKLLSKLCMTGDIEKAVKLLDRM 602
Query: 613 ITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCL 672
+ N EPSK MY K++ ALCQA +M+ A+ +F+V V +G TP +VTYT+MI+ YC++NCL
Sbjct: 603 LLSNVEPSKIMYSKILAALCQAGDMKNARTLFDVFVHRGFTPDVVTYTIMINSYCRMNCL 662
Query: 673 REARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEM 732
+EA D+F DMK+RGI PDV+T+TVL D K L SS + K + S +M
Sbjct: 663 QEAHDLFQDMKRRGIKPDVITFTVLLDGSLKEYLGKRFSSHG--KRKTTSLYVSTILRDM 720
Query: 733 KEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDL 792
++M I PDV+ YTVL+ T N + +++F+++ + GLEPDT+TYTAL+ G +G +
Sbjct: 721 EQMKINPDVVCYTVLMDGHMKTDNFQQAVSLFDKMIESGLEPDTITYTALVSGLCNRGHV 780
Query: 793 DRAIALVDEMSVKGIQGDDYTKSSLERGIEKARILQYR 830
++A+ L++EMS KG+ D + S+L+RGI KAR +Q+
Sbjct: 781 EKAVTLLNEMSSKGMTPDVHIISALKRGIIKARKVQFH 818
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224076898|ref|XP_002305039.1| predicted protein [Populus trichocarpa] gi|222848003|gb|EEE85550.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/758 (46%), Positives = 490/758 (64%), Gaps = 29/758 (3%)
Query: 69 NEHNDEIKCSFSY--LNTREVVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRI 126
N H D K L + ++V+ LY+L+ +P +A S F LK ++ YAAI+RI
Sbjct: 49 NNHTDPAKDDDQQQPLQSHKIVDTLYNLKNQPHLAFSIFSHLKNP----DIPAYAAIIRI 104
Query: 127 LCCCGWQKKLESMLLELVRKKTD-ANFEATDLIEALC---------------GEGSTLLT 170
LC G K L S+ L L + D +F+ + L++ L S+ L
Sbjct: 105 LCHWGLHKMLHSIFLHLHQNNNDFTSFDISHLLDTLSLPHHIDIDLEKEDTVKHRSSFLI 164
Query: 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQH 230
++ DA++K+YV+ GM DE I+ LFQI RRGF+ I + NY MN+L+ GKVD ALA+Y+
Sbjct: 165 QVYDALVKSYVTAGMLDEAINALFQIKRRGFLPHIFTFNYLMNKLIANGKVDAALAIYKQ 224
Query: 231 LKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGM 290
LK LGL+ N+YTY I+IKA C+KGS+ EA VF EME GV PNA+AY+T IEGLC N
Sbjct: 225 LKSLGLNPNDYTYSIIIKAFCRKGSLVEASNVFQEMELCGVIPNAYAYTTYIEGLCANQR 284
Query: 291 LDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSA 350
D GY++L W+E +IP+ +AY VIR FC++ K+++AE VL MEKQ ++ D YS
Sbjct: 285 SDFGYQVLQAWKEGNIPIDVYAYVAVIRGFCNEMKMDRAEVVLGDMEKQELISDARCYSE 344
Query: 351 LISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMG 410
LI GYCK G ++KAL LH++M SKGIKTNC ++S IL+ C+KGM S +++F FKD+
Sbjct: 345 LIRGYCKAGDLSKALALHNDMESKGIKTNCVIVSTILQYFCEKGMHSQVVEEFKRFKDLR 404
Query: 411 FFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDAL 470
FL++V Y+++VD+LCKL +V++A+ L EMK +Q+ D+++YTT+I GYC GKL DA
Sbjct: 405 IFLDEVSYNIVVDALCKLEKVDQAVALLDEMKGKQMDMDIMHYTTLINGYCHVGKLVDAF 464
Query: 471 DLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGL 530
+F+EM+ G +PD++T+N+L AF++ G +A L YMK L+PN +THN++IEGL
Sbjct: 465 RVFEEMEGKGLEPDVVTFNILLAAFSRRGLANEALKLYEYMKSQDLKPNAITHNVMIEGL 524
Query: 531 CMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCN 590
C+GG+V EAEAF ++ K ++NY AMI GYC+ HT++A +LF LS +G+L+ +
Sbjct: 525 CIGGKVTEAEAFFCNMEDKSIDNYGAMITGYCEAKHTEKASELFFELSERGLLMDRGYIY 584
Query: 591 KLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDK 650
KL+ L + + AL L KTM+ LN EPSK MY K+I A +A +M A+ VF++L
Sbjct: 585 KLLEKLCEEGEKDRALWLLKTMLDLNMEPSKDMYGKVITACYRAGDMRNAEAVFDILRKS 644
Query: 651 GLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSS 710
GLTP + TYT MI+ C+ N L EAR++F DMK RGI PD+VT+TVL D H LK
Sbjct: 645 GLTPDIFTYTTMINVCCRQNRLSEARNLFQDMKHRGIKPDLVTFTVLLDGH----LKRVH 700
Query: 711 SSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDR 770
S A + KE + AS W EM+ IRPDVI YT LI C LED I +++E+ R
Sbjct: 701 SEAFARKRKEVNLAASNIWKEMQNTEIRPDVICYTALIDGHCKVDRLEDAIGLYDEMMYR 760
Query: 771 GLEPDTVTYTALLCGYLAKGDLDRAIA---LVDEMSVK 805
G+EPD T TALL G +GD+D + L++ SVK
Sbjct: 761 GVEPDRATCTALLSGCRNRGDVDMVLTKLNLINLTSVK 798
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449505420|ref|XP_004162464.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/753 (46%), Positives = 487/753 (64%), Gaps = 20/753 (2%)
Query: 58 SDSELEESSVNNEHNDEIKCSFSYLNTREVVEKLYSLRKEPKIALSFFEQLKRSGFSHNL 117
SD E SS N N + K S +VV+ L SLR+EPKIA SFF +L+ GF HN+
Sbjct: 40 SDDEQSTSSFNTSLNVQCKPS-------KVVQVLESLRREPKIAFSFFCELEERGFQHNI 92
Query: 118 CTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTL---LTRLSD 174
TYAA++RILC G +KLE++ L L+ K F+ DLIE+L +G + R+ D
Sbjct: 93 STYAALIRILCSWGLGRKLETLFLNLIGSK-KVEFDVLDLIESL-NQGCVVDASFIRVYD 150
Query: 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL 234
A+IKAYVSV +FD +D+LF++ R+GFV I +CNY +N+L+E GK++MAL VY+ LKR
Sbjct: 151 ALIKAYVSVNLFDSVVDLLFRLGRKGFVPHIFTCNYLLNRLIEHGKMNMALVVYEQLKRF 210
Query: 235 GLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLG 294
G N+YTY VIK LCK G M++A+++F EM G+ PNAFA + IE LC + G
Sbjct: 211 GCQPNDYTYATVIKGLCKIGKMEKAIDIFEEMSGYGMVPNAFACAAYIEALCTHDCSTSG 270
Query: 295 YELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISG 354
Y+LL W P+ +AYTVVIR FCD+ K+++AE V L ME GVVPD Y LI+G
Sbjct: 271 YQLLQAWRAELFPIDTYAYTVVIRGFCDEMKIDEAESVFLDMENYGVVPDAQTYGVLING 330
Query: 355 YCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLN 414
YCK + KAL LH M SKGIK+NC ++S IL+ + M S + QF F+ G FL+
Sbjct: 331 YCKKLNLQKALSLHSLMLSKGIKSNCVIVSFILQCFLRMQMYSEVVNQFKVFQGKGVFLD 390
Query: 415 KVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFK 474
V Y+++V +LC+LG++E+A+ L +EM RQI DV++YTTMI G QGK+ +A+ +F+
Sbjct: 391 NVVYNIVVHALCELGKLEEAIELLEEMTSRQIQMDVMHYTTMIKGLFAQGKIHEAMMMFE 450
Query: 475 EMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGG 534
+K+ G +PD ITY+VLA F++ G V K DLL+YM+ HGL + ++IIE LC+GG
Sbjct: 451 NLKKNGVEPDSITYSVLAAGFSRNGLVSKVQDLLDYMEEHGLRKDPKMPDLIIENLCIGG 510
Query: 535 RVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLIT 594
+V+EA + L+ K ++NY+AMINGYC TK A++LF+ LS +G+ +++SS +L++
Sbjct: 511 KVKEATEIFNSLEVKTVDNYAAMINGYCAASDTKSAYKLFVNLSKEGIFIRRSSLVRLVS 570
Query: 595 NLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTP 654
L + + A+++ K + +N E + +Y+K+I +LC+ + M+ AQ +F+ LV GL P
Sbjct: 571 RLCMENSSFRAIEVMKQLPVMNVEAKEIVYNKVIASLCRVKNMKMAQCLFDCLVRAGLIP 630
Query: 655 HLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPD 714
L+TYTMMI+GYCKIN LREA ++ DM+ RG PD+ YTVL D K +L+ SS
Sbjct: 631 DLITYTMMINGYCKINYLREAYELLCDMRNRGREPDIFVYTVLLDGGFKTSLQKCSSVEI 690
Query: 715 ALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEP 774
AL S +NEMK+M I PDV+ YTVLI C NL D +F E+ D+G+E
Sbjct: 691 AL--------TSSIFNEMKDMKITPDVVYYTVLIDGYCKMNNLNDAFVLFEEMVDQGIEA 742
Query: 775 DTVTYTALLCGYLAKGDLDRAIALVDEMSVKGI 807
D VTYTALL G ++A L EM+ KGI
Sbjct: 743 DAVTYTALLSSCCRNGYKEKAQTLCYEMTSKGI 775
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458001|ref|XP_004146736.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/755 (45%), Positives = 486/755 (64%), Gaps = 23/755 (3%)
Query: 58 SDSELEESSVNNEHNDEIKCSFSYLNTREVVEKLYSLRKEPKIALSFFEQLKRSGFSHNL 117
SD E SS N N + K S +VV+ L SLR+EPKIA SFF +L+ GF HN+
Sbjct: 40 SDDEQSTSSFNTSLNVQCKPS-------KVVQVLESLRREPKIAFSFFCELEERGFQHNI 92
Query: 118 CTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTL---LTRLSD 174
TYAA++RILC G +KLE++ L L+ K F+ DLIE+L +G + R+ D
Sbjct: 93 STYAALIRILCSWGLGRKLETLFLNLIGSKK-VEFDVLDLIESL-NQGCVVDASFIRVYD 150
Query: 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL 234
A+IKAYVSV +FD +D+LF++ R+GFV I +CNY +N+L+E GK++MAL VY+ LKR
Sbjct: 151 ALIKAYVSVNLFDSVVDLLFRLGRKGFVPHIFTCNYLLNRLIEHGKMNMALVVYEQLKRF 210
Query: 235 GLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLG 294
G N+YTY VIK LCK G M++A+++F EM G+ PNAFA + IE LC + G
Sbjct: 211 GCQPNDYTYATVIKGLCKIGKMEKAIDIFEEMSGYGMVPNAFACAAYIEALCTHDCSTSG 270
Query: 295 YELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISG 354
Y+LL W P+ +AYTVVIR FCD+ K+++AE V L ME GVVPD Y LI+G
Sbjct: 271 YQLLQAWRAELFPIDTYAYTVVIRGFCDEMKIDEAESVFLDMENYGVVPDAQTYGVLING 330
Query: 355 YCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLN 414
YCK + KAL LH M SKGIK+NC ++S IL+ + M S + QF F+ G FL+
Sbjct: 331 YCKKLNLQKALSLHSLMLSKGIKSNCVIVSFILQCFLRMQMYSEVVNQFKVFQGKGVFLD 390
Query: 415 KVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFK 474
V Y+++V +LC+LG++E+A+ L +EM RQI DV++YTTMI G QGK+ +A+ +F+
Sbjct: 391 NVVYNIVVHALCELGKLEEAIELLEEMTSRQIQMDVMHYTTMIKGLFAQGKIHEAMMMFE 450
Query: 475 EMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGG 534
+K+ G +PD ITY+VLA F++ G V K DLL+YM+ HGL + ++IIE LC+GG
Sbjct: 451 NLKKNGVEPDSITYSVLAAGFSRNGLVSKVQDLLDYMEEHGLRKDPKMPDLIIENLCIGG 510
Query: 535 RVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLIT 594
+V+EA + L+ K ++NY+AMINGYC TK A++LF+ LS +G+ +++SS +L++
Sbjct: 511 KVKEATEIFNSLEVKTVDNYAAMINGYCAASDTKSAYKLFVNLSKEGIFIRRSSLVRLVS 570
Query: 595 NLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTP 654
L + + A+++ K + +N E + +Y+K+I +LC+ + M+ AQ +F+ LV GL P
Sbjct: 571 RLCMENSSFRAIEVMKQLPVMNVEAKEIVYNKVIASLCRVKNMKMAQCLFDCLVRAGLIP 630
Query: 655 HLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPD 714
L+TYTMMI+GYCKIN LREA ++ DM+ RG PD+ YTVL D K +L+ SS
Sbjct: 631 DLITYTMMINGYCKINYLREAYELLCDMRNRGREPDIFVYTVLLDGGFKTSLQKCSSVEI 690
Query: 715 ALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEP 774
AL S +NEMK+M I PDV+ YTVLI C NL D +F E+ D+G+E
Sbjct: 691 AL--------TSSIFNEMKDMKITPDVVYYTVLIDGYCKMNNLNDAFVLFEEMVDQGIEA 742
Query: 775 DTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQG 809
D VTYTALL G ++A L SVKG Q
Sbjct: 743 DAVTYTALLSSCCRNGYKEKAQTL---FSVKGSQS 774
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357463937|ref|XP_003602250.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355491298|gb|AES72501.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 605 bits (1561), Expect = e-170, Method: Compositional matrix adjust.
Identities = 328/785 (41%), Positives = 472/785 (60%), Gaps = 42/785 (5%)
Query: 58 SDSELEESSVNNEHNDEIKCSFSY-LNTREVVEKLYSLRKEPKIALSFFEQLK-RSGFSH 115
S + L +SS + H + S S+ NT ++++KL+ R P +ALS F +LK + GFSH
Sbjct: 36 SSTALAQSSTSETHFTKPSNSSSFHPNTSQILQKLHLYRNNPSLALSHFSELKNQHGFSH 95
Query: 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDAN--FEATDLIEAL-----CGEGSTL 168
N+ TY AI+RILC ++L+S+ +++ + N FE DL E L + +
Sbjct: 96 NIQTYVAIIRILCYWNLNRRLDSLFRDIIISHSKQNPLFEIHDLFEKLLEGVNVKDKNHY 155
Query: 169 LTRLSDAMIKAYVSVGMFDEGIDILF--QINRRGFVWSICSCNYFMNQLVECGKVDMALA 226
L R +KA V + MFD+ ID +F QI R G + +I +CN+ +N+LV+C +V+MA
Sbjct: 156 LLRAFVGFVKACVGLNMFDDAIDFMFMFQIRRFGILPNIFACNFLINRLVKCDQVNMAFE 215
Query: 227 VYQHLKRLGLSLNEYTYVIVIKAL-CKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGL 285
++ +K LGL N +TY I+IKAL K G +++A VF EM++AGVTPN++ Y+ IEGL
Sbjct: 216 IFDRIKSLGLCPNHHTYAIIIKALGTKGGDLKQASGVFDEMKEAGVTPNSYCYAAYIEGL 275
Query: 286 CMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDV 345
C N DLGY+LL E + P+ +AYT VIR FC++ KL+KA V ME Q +VPD
Sbjct: 276 CNNHQSDLGYDLLRALRENNAPIDVYAYTAVIRGFCNEMKLDKAMQVFYDMEWQRLVPDC 335
Query: 346 YAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLE 405
+ YS+LI GYCK + KAL L+ +M KGIKTNC ++S IL + G S + F E
Sbjct: 336 HVYSSLICGYCKTHDLVKALDLYEDMILKGIKTNCVIVSCILHCFAEMGEDSRVVDTFKE 395
Query: 406 FKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGK 465
K G FL+ V Y+++ DSL KLG++++ + +++K I D+ +YTT I GYCLQGK
Sbjct: 396 VKQSGVFLDGVAYNIVFDSLFKLGKMDEVAGMLEDLKSMHIDFDIKHYTTFIKGYCLQGK 455
Query: 466 LGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNM 525
A +FKEM+E G KPD++ YNVLA V +A DLLNYM G++PN TH +
Sbjct: 456 PDKAYIIFKEMEEKGFKPDVVAYNVLAAGLCGNRHVSEAMDLLNYMDSQGVKPNSTTHKI 515
Query: 526 IIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVK 585
IIEG C G++EEAE + + +K + +E Y+AM++GYC+ +++++LF LSN+G +
Sbjct: 516 IIEGFCSEGKIEEAEGYFNSMKDESVEIYTAMVSGYCEADLIEKSYELFHELSNRGDTAQ 575
Query: 586 KSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFN 645
+SSC K + SK +Y K++ LCQ M++A+ +F+
Sbjct: 576 ESSCLKQL--------------------------SKVLYSKVLAELCQKGNMQRARSLFD 609
Query: 646 VLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKIN 705
+ +G TP +VTYT+MI YC +NCL+EA D+F DMK RGI PDV+TYTVL D SK
Sbjct: 610 FFLGRGFTPDVVTYTIMIKSYCTMNCLQEAHDLFQDMKSRGIKPDVITYTVLLDGKSKQA 669
Query: 706 LKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFN 765
S + K+ D S W +MK+ + PDV+ YTVLI N ED I +FN
Sbjct: 670 RSKEHFSSQHGKGKDAPYDVSTIWRDMKDREVSPDVVIYTVLIDGHIKVDNFEDAIRLFN 729
Query: 766 EISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLERGIEKAR 825
E+ RGLEPD VTYTAL G L G+ + A+ L +EMS KG+ + + + I K R
Sbjct: 730 EVMKRGLEPDNVTYTALFSGLLNSGNSEIAVTLYNEMSSKGMTPPLH----INQRILKVR 785
Query: 826 ILQYR 830
LQ++
Sbjct: 786 KLQFQ 790
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297825903|ref|XP_002880834.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297326673|gb|EFH57093.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 590 bits (1521), Expect = e-165, Method: Compositional matrix adjust.
Identities = 332/779 (42%), Positives = 480/779 (61%), Gaps = 28/779 (3%)
Query: 65 SSVNNEHN-DEIKCSFSYLNTREVVEK-----LYSLRKEPKIALSFFEQLKRSGFSHNLC 118
S++NN +N + + ++LN ++ + L S R +P ALSF QLK S N+
Sbjct: 29 SALNNPNNLSDSEQQVNHLNLSKLTQYGLQRLLNSTRDDPNQALSFLRQLKEHDVSPNVN 88
Query: 119 TYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEAL------CGEGSTLLTRL 172
YA +VRIL G +KL+S+L+EL+ K + F DLIE + + S +L R+
Sbjct: 89 AYATLVRILTSWGLDRKLDSVLVELI-KNEERGFSVMDLIEVIGEEEAEEDQRSLVLIRV 147
Query: 173 SDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLK 232
S A++KAYV +GMFDE ID+LFQ R V I +CN+ MN+L+E GK+ M +A+++ LK
Sbjct: 148 SGALVKAYVGLGMFDEAIDVLFQSKRLDCVPDIKACNFLMNRLIEFGKIGMVVALFKQLK 207
Query: 233 RLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLD 292
+LGL NEYTY IV+KALC+KG ++ A + LE +P+ F+Y T I+GLC+NG +
Sbjct: 208 QLGLCANEYTYAIVVKALCRKGDLEGAAMLLLE------SPSVFSYKTFIDGLCVNGETE 261
Query: 293 LGYELLLKWEEADIPLSAFAYTV---VIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYS 349
L+ + + ++ + TV V+R FC++ K+E AE V+L MEK G PDV A S
Sbjct: 262 KAVVLIEEMIDTNVLVGDDLRTVFCMVVRGFCNEMKMEAAESVILEMEKIGFGPDVSACS 321
Query: 350 ALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDM 409
A+I YCK + +AL +M KG+K NC ++S IL+ C+ M +++F EF+DM
Sbjct: 322 AIIDRYCKNMNLPEALGFLDKMLGKGLKINCVIVSSILQCYCKMDMCLEALEKFKEFRDM 381
Query: 410 GFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDA 469
FL++VCY+V D+L KLG VE+A+ L +EMKD+ IVPDV+NYTT+I GYCL+GK+ DA
Sbjct: 382 NIFLDRVCYNVAFDALSKLGRVEEAIELLQEMKDKGIVPDVINYTTLIDGYCLKGKVVDA 441
Query: 470 LDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEG 529
LDL EM G PD+ITYNVL A+ G + ++ MK GL+PN VT N+IIEG
Sbjct: 442 LDLIDEMIGNGTSPDLITYNVLVSGLARNGHEEAVLEIYERMKAEGLKPNAVTDNVIIEG 501
Query: 530 LCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSC 589
LC +V+EAE F L+ KC EN ++++ GYC++G +K+AF+LF+ L ++KS
Sbjct: 502 LCFARKVKEAEDFFMSLEQKCPENKASLVKGYCESGLSKKAFKLFVTLEYP---LRKSVY 558
Query: 590 NKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVD 649
KL +L I + A + K M EP +SM K+IGALC+ AQ +F+ +V+
Sbjct: 559 IKLFFSLCIEGCLDKAHTVLKRMWAYRVEPGRSMCGKMIGALCRLNNAIDAQQLFDTMVE 618
Query: 650 KGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGS 709
+GL P L TYT+MIH YC++N L++A +F DMKQRGI PDVVTYTVL D + K++ +
Sbjct: 619 RGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLDRYLKLDPEHH 678
Query: 710 SSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISD 769
+ + + S E GI DV+SYTVLI + C LE +F+ + D
Sbjct: 679 ETGSVQGEVGK---RNSELLREFSASGIGLDVVSYTVLIDRQCKMDKLEQAAELFDRMID 735
Query: 770 RGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLERGIEKARILQ 828
GLEPD V YTAL+ Y KG +D+A+ LV E+S K ++ +++++R KA+ Q
Sbjct: 736 SGLEPDIVAYTALISSYFRKGYIDKAVTLVTELSKKYNIPTEHFEAAVKRAALKAKRFQ 794
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 831 | ||||||
| TAIR|locus:2039558 | 799 | AT2G26790 [Arabidopsis thalian | 0.902 | 0.938 | 0.424 | 1.3e-153 | |
| TAIR|locus:2014759 | 883 | FAC19 "AT1G13800" [Arabidopsis | 0.886 | 0.834 | 0.377 | 8.7e-127 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.791 | 0.902 | 0.280 | 1.4e-71 | |
| TAIR|locus:2016427 | 904 | AT1G19290 [Arabidopsis thalian | 0.864 | 0.794 | 0.268 | 2.7e-68 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.884 | 0.803 | 0.260 | 5.6e-68 | |
| TAIR|locus:2168078 | 907 | AT5G59900 "AT5G59900" [Arabido | 0.724 | 0.663 | 0.273 | 1.2e-65 | |
| TAIR|locus:2174008 | 974 | AT5G61990 "AT5G61990" [Arabido | 0.730 | 0.623 | 0.277 | 2.6e-64 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.667 | 0.742 | 0.260 | 8.8e-63 | |
| TAIR|locus:2095309 | 687 | AT3G09060 "AT3G09060" [Arabido | 0.737 | 0.892 | 0.251 | 2.1e-61 | |
| TAIR|locus:2077637 | 871 | AT3G06920 "AT3G06920" [Arabido | 0.756 | 0.722 | 0.239 | 1.3e-60 |
| TAIR|locus:2039558 AT2G26790 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1498 (532.4 bits), Expect = 1.3e-153, P = 1.3e-153
Identities = 332/783 (42%), Positives = 481/783 (61%)
Query: 65 SSVNNEHN--DEIKCSFSYLN----TREVVEKLY-SLRKEPKIALSFFEQLKRSGFSHNL 117
S++NN +N D + ++LN T+ +++L S R +P +ALSF QLK G S N+
Sbjct: 30 SALNNPNNLSDSEQQQVNHLNLSKLTQHGLQRLLNSTRDDPNLALSFLRQLKEHGVSPNV 89
Query: 118 CTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEG------STLLTR 171
YA +VRIL G KL+S+L+EL+ K + F DLIE + GE S +L R
Sbjct: 90 NAYATLVRILTTWGLDIKLDSVLVELI-KNEERGFTVMDLIEVI-GEQAEEKKRSFVLIR 147
Query: 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHL 231
+S A++KAYVS+GMFDE D+LFQ R V I +CN+ MN++ E GK+ M + +++ L
Sbjct: 148 VSGALVKAYVSLGMFDEATDVLFQSKRLDCVVDIKACNFLMNRMTEFGKIGMLMTLFKQL 207
Query: 232 KRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGML 291
K+LGL NEYTY IV+KALC+KG+++EA + +E E + F Y T I GLC+ G
Sbjct: 208 KQLGLCANEYTYAIVVKALCRKGNLEEAAMLLIENE------SVFGYKTFINGLCVTGET 261
Query: 292 DLGYELLLKWEE----ADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYA 347
+ L+L+ + A L A +V+R FC++ K++ AE V++ ME+ G DVYA
Sbjct: 262 EKAVALILELIDRKYLAGDDLRA-VLGMVVRGFCNEMKMKAAESVIIEMEEIGFGLDVYA 320
Query: 348 YSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFK 407
A+I YCK + +AL +M KG+K NC ++S+IL+ C+ M +++F EF+
Sbjct: 321 CLAVIDRYCKNMNLPEALGFLDKMLGKGLKVNCVIVSLILQCYCKMDMCLEALEKFKEFR 380
Query: 408 DMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLG 467
DM FL++VCY+V D+L KLG VE+A L +EMKDR IVPDV+NYTT+I GYCLQGK+
Sbjct: 381 DMNIFLDRVCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVV 440
Query: 468 DALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMII 527
DALDL EM G PD+ITYNVL A+ G ++ ++ MK G +PN VT+++II
Sbjct: 441 DALDLIDEMIGNGMSPDLITYNVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVII 500
Query: 528 EGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKS 587
EGLC +V+EAE F L+ KC EN ++ + GYC+ G +K+A++ F+RL ++KS
Sbjct: 501 EGLCFARKVKEAEDFFSSLEQKCPENKASFVKGYCEAGLSKKAYKAFVRLEYP---LRKS 557
Query: 588 SCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVL 647
KL +L I A + K M EP +SM K+IGA C+ + +AQ++F+ +
Sbjct: 558 VYIKLFFSLCIEGYLEKAHDVLKKMSAYRVEPGRSMCGKMIGAFCKLNNVREAQVLFDTM 617
Query: 648 VDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLK 707
V++GL P L TYT+MIH YC++N L++A +F DMKQRGI PDVVTYTVL D + K++ +
Sbjct: 618 VERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLDRYLKLDPE 677
Query: 708 GSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEI 767
+ ++Q + AS E GI DV+ YTVLI + C NLE +F+ +
Sbjct: 678 HHETC--SVQGEVGKRKASEVLREFSAAGIGLDVVCYTVLIDRQCKMNNLEQAAELFDRM 735
Query: 768 SDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVK-GIQGDDYTKSSLERGIEKARI 826
D GLEPD V YT L+ Y KG +D A+ LV E+S K I + + +++++ KA+
Sbjct: 736 IDSGLEPDMVAYTTLISSYFRKGYIDMAVTLVTELSKKYNIPSESF-EAAVKSAALKAKR 794
Query: 827 LQY 829
QY
Sbjct: 795 FQY 797
|
|
| TAIR|locus:2014759 FAC19 "AT1G13800" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1245 (443.3 bits), Expect = 8.7e-127, P = 8.7e-127
Identities = 294/778 (37%), Positives = 446/778 (57%)
Query: 62 LEESSVNNEHNDEIK-CSFSY----LNTREVVEKLYSLRKEPKIALSFFEQLKRSGFSHN 116
L +++ H++++K +F Y LN V+ L S++ +P +ALSF ++++ + +
Sbjct: 30 LARTNLTISHSEQVKEGTFDYKALELNDIGVLRVLNSMKDDPYLALSFLKRIEGNVTLPS 89
Query: 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDAN-FEATDLIEALCGE---GSTLLTRL 172
+ YA ++RI+C G KKL++ L ELVR+ + F DL++A+ GE LL R+
Sbjct: 90 VQAYATVIRIVCGWGLDKKLDTFLFELVRRGDEGRGFSVMDLLKAI-GEMEQSLVLLIRV 148
Query: 173 SDAMIKAYVSVGMFDEGIDILFQINRR-GFVWSICSCNYFMNQLVECGKVDMALAVYQHL 231
S A++KAY ++ MFDE IDI F+ G I + N+ +++++ G+ DM + + +
Sbjct: 149 STALVKAYANLDMFDEAIDIFFRAYYSLGRAPDIKALNFLISRMIASGRSDMVVGFFWEI 208
Query: 232 KRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFA-YSTCIEGLCMNGM 290
+RLGL + +TYV+V++AL + +E +E L T N Y IEGLC+N M
Sbjct: 209 ERLGLDADAHTYVLVVQALWRNDDKEE-LEKLLSRLLISETRNPCVFYLNFIEGLCLNQM 267
Query: 291 LDLGYELLLKWEEADIPLS----AFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVY 346
D+ Y LL +A+I + AY V+R C + ++E AE V+L MEK G+ PDVY
Sbjct: 268 TDIAYFLLQPLRDANILVDKSDLGIAYRKVVRGLCYEMRIEDAESVVLDMEKHGIDPDVY 327
Query: 347 AYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEF 406
YSA+I G+ K I KA+ + ++M K + NC ++S IL+ CQ G S F EF
Sbjct: 328 VYSAIIEGHRKNMNIPKAVDVFNKMLKKRKRINCVIVSSILQCYCQMGNFSEAYDLFKEF 387
Query: 407 KDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKL 466
++ L++VCY+V D+L KLG+VE+A+ LF+EM + I PDV+NYTT+I G CLQGK
Sbjct: 388 RETNISLDRVCYNVAFDALGKLGKVEEAIELFREMTGKGIAPDVINYTTLIGGCCLQGKC 447
Query: 467 GDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMI 526
DA DL EM G PDI+ YNVLAG A G Q+AF+ L M+ G++P +VTHNM+
Sbjct: 448 SDAFDLMIEMDGTGKTPDIVIYNVLAGGLATNGLAQEAFETLKMMENRGVKPTYVTHNMV 507
Query: 527 IEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKK 586
IEGL G +++AEAF + L+ K EN ++M+ G+C G AF+ F+RL + K
Sbjct: 508 IEGLIDAGELDKAEAFYESLEHKSRENDASMVKGFCAAGCLDHAFERFIRLEFP---LPK 564
Query: 587 SSCNKLITNLLILRDN-NNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFN 645
S L T+L +D + A L M L EP KSMY KLIGA C+ + +A+ F
Sbjct: 565 SVYFTLFTSLCAEKDYISKAQDLLDRMWKLGVEPEKSMYGKLIGAWCRVNNVRKAREFFE 624
Query: 646 VLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKIN 705
+LV K + P L TYT+MI+ YC++N ++A +F DMK+R + PDVVTY+VL ++ +++
Sbjct: 625 ILVTKKIVPDLFTYTIMINTYCRLNEPKQAYALFEDMKRRDVKPDVVTYSVLLNSDPELD 684
Query: 706 LKGSSSS----PDALQ--------CK-EDVVDASVFWNEMKEMGIRPDVISYTVLIAKLC 752
+K + PD + C D+ + +MK I PDV++YTVL+ K
Sbjct: 685 MKREMEAFDVIPDVVYYTIMINRYCHLNDLKKVYALFKDMKRREIVPDVVTYTVLL-KNK 743
Query: 753 NTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGD 810
+NL + F+ ++PD YT L+ GDL A + D+M G+ D
Sbjct: 744 PERNLSREMKAFD------VKPDVFYYTVLIDWQCKIGDLGEAKRIFDQMIESGVDPD 795
|
|
| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
Identities = 190/678 (28%), Positives = 319/678 (47%)
Query: 44 SRSVSALAHLRLICSDSELEESSVNN--EHNDEIKCSFSYLNTREVVEKLYSLRKEPKIA 101
S S S+ + SDS L E + + N+ ++ LN VVE LY R + +
Sbjct: 36 SSSSSSSSSASFSVSDSFLVEKICFSLKQGNNNVRNHLIRLNPLAVVEVLYRCRNDLTLG 95
Query: 102 LSFFEQL--KRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIE 159
F +QL F H + +A++ IL G +S LL ++R+ + E + ++
Sbjct: 96 QRFVDQLGFHFPNFKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLD 155
Query: 160 AL---CGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLV 216
+ CG ++ D +I+ YV E + + +GF SI +CN + LV
Sbjct: 156 STFSNCGSNDSVF----DLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLV 211
Query: 217 ECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFL-EMEKAGVTPNA 275
G V++A VYQ + R G+ +N YT I++ ALCK G M E V FL ++++ GV P+
Sbjct: 212 RIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKM-EKVGTFLSQVQEKGVYPDI 270
Query: 276 FAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLH 335
Y+T I G+++ +EL+ + Y VI C K E+A+ V
Sbjct: 271 VTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAE 330
Query: 336 MEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGM 395
M + G+ PD Y +L+ CK G + + + +M S+ + + S ++ + G
Sbjct: 331 MLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGN 390
Query: 396 ASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTT 455
+ F K+ G + V Y +++ C+ G + AM L EM + DVV Y T
Sbjct: 391 LDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNT 450
Query: 456 MICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHG 515
++ G C + LG+A LF EM E PD T +L + G +Q A +L MK
Sbjct: 451 ILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKR 510
Query: 516 LEPNFVTHNMIIEGLCMGGRVEEA-EAFLDGLKGKCLE---NYSAMINGYCKTGHTKEAF 571
+ + VT+N +++G G ++ A E + D + + L +YS ++N C GH EAF
Sbjct: 511 IRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAF 570
Query: 572 QLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGAL 631
+++ + ++ + CN +I + ++ + MI+ P Y+ LI
Sbjct: 571 RVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGF 630
Query: 632 CQAEEMEQA-QLVFNVLVDKG-LTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITP 689
+ E M +A LV + ++G L P + TY ++HG+C+ N ++EA V M +RG+ P
Sbjct: 631 VREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNP 690
Query: 690 DVVTYTVLFDAH-SKINL 706
D TYT + + S+ NL
Sbjct: 691 DRSTYTCMINGFVSQDNL 708
|
|
| TAIR|locus:2016427 AT1G19290 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
Identities = 199/741 (26%), Positives = 357/741 (48%)
Query: 91 LYSLRKEPKIALSFFEQL-KRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTD 149
L LR P+ L F K+ F + Y +V IL ++ +S L ELV
Sbjct: 77 LRRLRLNPEACLEIFNLASKQQKFRPDYKAYCKMVHILSRARNYQQTKSYLCELVALNHS 136
Query: 150 ANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCN 209
+L+ E S T + D ++K Y G+ + + + G + S+ SCN
Sbjct: 137 GFVVWGELVRVF-KEFSFSPT-VFDMILKVYAEKGLVKNALHVFDNMGNYGRIPSLLSCN 194
Query: 210 YFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKA 269
++ LV G+ +AL VY + +S + +T IV+ A C+ G++ +A+ E E +
Sbjct: 195 SLLSNLVRKGENFVALHVYDQMISFEVSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESS 254
Query: 270 -GVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEK 328
G+ N Y++ I G M G ++ +L E + + YT +I+ +C + +E+
Sbjct: 255 LGLELNVVTYNSLINGYAMIGDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEE 314
Query: 329 AECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILK 388
AE V ++++ +V D + Y L+ GYC+ G+I A+ +H M G++TN + + ++
Sbjct: 315 AEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLIN 374
Query: 389 GLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVP 448
G C+ G + F D + Y+ +VD C+ G V++A+ L +M +++VP
Sbjct: 375 GYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVP 434
Query: 449 DVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLL 508
V+ Y ++ GY G D L L+K M + G D I+ + L A + G +A L
Sbjct: 435 TVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLW 494
Query: 509 NYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLK-GKC---LENYSAMINGYCKT 564
+ GL + +T N++I GLC +V EA+ LD + +C ++ Y A+ +GY K
Sbjct: 495 ENVLARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKV 554
Query: 565 GHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMY 624
G+ KEAF + + +G+ N LI+ R N L + P+ + Y
Sbjct: 555 GNLKEAFAVKEYMERKGIFPTIEMYNTLISGAFKYRHLNKVADLVIELRARGLTPTVATY 614
Query: 625 DKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQ 684
LI C +++A +++KG+T ++ + + + +++ + EA + Q
Sbjct: 615 GALITGWCNIGMIDKAYATCFEMIEKGITLNVNICSKIANSLFRLDKIDEACLLL----Q 670
Query: 685 RGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISY 744
+ +V + +L + + +S+ L+ ++ + SV + K++ + P+ I Y
Sbjct: 671 K-----IVDFDLLLPGYQSLKEFLEASATTCLKTQK--IAESVENSTPKKLLV-PNNIVY 722
Query: 745 TVLIAKLCNTQNLEDGITVFNEI--SDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEM 802
V IA LC LED +F+++ SDR + PD TYT L+ G GD+++A L DEM
Sbjct: 723 NVAIAGLCKAGKLEDARKLFSDLLSSDRFI-PDEYTYTILIHGCAIAGDINKAFTLRDEM 781
Query: 803 SVKGIQGDDYTKSSLERGIEK 823
++KGI + T ++L +G+ K
Sbjct: 782 ALKGIIPNIVTYNALIKGLCK 802
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
Identities = 199/763 (26%), Positives = 358/763 (46%)
Query: 65 SSVNNEHNDEIKCSFSYLNTREVVEKLYSLRKEPKIALSFFEQLKRSG-FSHNLCTYAAI 123
S N + +K S ++ V L+SL +PK AL+F + ++ + H++ +YA++
Sbjct: 71 SKPNWHKSPSLKSMVSAISPSHV-SSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASL 129
Query: 124 VRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGST---------LLTRLSD 174
+ +L G+ + + L ++ K D+ +A +++ LC + + L+ +
Sbjct: 130 LTLLINNGYVGVVFKIRLLMI-KSCDSVGDALYVLD-LCRKMNKDERFELKYKLIIGCYN 187
Query: 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL 234
++ + G+ DE + ++ +I + N +N + G V+ A +
Sbjct: 188 TLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEA 247
Query: 235 GLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLG 294
GL + +TY +I C++ + A +VF EM G N AY+ I GLC+ +D
Sbjct: 248 GLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEA 307
Query: 295 YELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISG 354
+L +K ++ + + YTV+I+ C + +A ++ ME+ G+ P+++ Y+ LI
Sbjct: 308 MDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDS 367
Query: 355 YCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMA--SATIKQFLEFKDMGFF 412
C K KA L +M KG+ N + ++ G C++GM + + + +E + +
Sbjct: 368 LCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLS-- 425
Query: 413 LNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDL 472
N Y+ ++ CK V KAM + +M +R+++PDVV Y ++I G C G A L
Sbjct: 426 PNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRL 484
Query: 473 FKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCM 532
M + G PD TY + + + V++A DL + +++ G+ PN V + +I+G C
Sbjct: 485 LSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCK 544
Query: 533 GGRVEEAEAFLDGLKGK-CLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSS 588
G+V+EA L+ + K CL N ++A+I+G C G KEA L ++ G+ S+
Sbjct: 545 AGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVST 604
Query: 589 CNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLV 648
LI LL D ++A F+ M++ +P Y I C+ + A+ + +
Sbjct: 605 DTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMR 664
Query: 649 DKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINL-K 707
+ G++P L TY+ +I GY + A DV M+ G P T+ L ++ K
Sbjct: 665 ENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGK 724
Query: 708 GSSSSPDALQCKEDV-VDASV-FWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFN 765
S P+ + D V +M E + P+ SY LI +C NL VF+
Sbjct: 725 QKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFD 784
Query: 766 EIS-DRGLEPDTVTYTALL-CGYLAKGDLDRAIALVDEMSVKG 806
+ + G+ P + + ALL C K + A +VD+M G
Sbjct: 785 HMQRNEGISPSELVFNALLSCCCKLKKH-NEAAKVVDDMICVG 826
|
|
| TAIR|locus:2168078 AT5G59900 "AT5G59900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 170/621 (27%), Positives = 298/621 (47%)
Query: 204 SICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVF 263
+I N ++ L + KV A+ + + L L + TY ++ LCK + +E+
Sbjct: 261 NIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMM 320
Query: 264 LEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQ 323
EM +P+ A S+ +EGL G ++ L+ + + + + F Y +I C
Sbjct: 321 DEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKG 380
Query: 324 NKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVL 383
K +AE + M K G+ P+ YS LI +C+ GK++ AL EM G+K +
Sbjct: 381 RKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPY 440
Query: 384 SVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKD 443
+ ++ G C+ G SA E + V Y ++ C G++ KA+ L+ EM
Sbjct: 441 NSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTG 500
Query: 444 RQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQK 503
+ I P + +TT++ G G + DA+ LF EM E KP+ +TYNV+ + + G + K
Sbjct: 501 KGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSK 560
Query: 504 AFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGL-KGKCLEN---YSAMIN 559
AF+ L M G+ P+ ++ +I GLC+ G+ EA+ F+DGL KG C N Y+ +++
Sbjct: 561 AFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLH 620
Query: 560 GYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEP 619
G+C+ G +EA + + +GV + LI L +D L K M +P
Sbjct: 621 GFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKP 680
Query: 620 SKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVF 679
+Y +I A + + ++A ++++++++G P+ VTYT +I+G CK + EA +
Sbjct: 681 DDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLC 740
Query: 680 NDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRP 739
+ M+ P+ VTY D I KG A++ ++ G+
Sbjct: 741 SKMQPVSSVPNQVTYGCFLD----ILTKGEVDMQKAVELHNAILK-----------GLLA 785
Query: 740 DVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALV 799
+ +Y +LI C +E+ + + G+ PD +TYT ++ + D+ +AI L
Sbjct: 786 NTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELW 845
Query: 800 DEMSVKGIQGDDYTKSSLERG 820
+ M+ KGI+ D ++L G
Sbjct: 846 NSMTEKGIRPDRVAYNTLIHG 866
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| TAIR|locus:2174008 AT5G61990 "AT5G61990" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 659 (237.0 bits), Expect = 2.6e-64, P = 2.6e-64
Identities = 180/648 (27%), Positives = 319/648 (49%)
Query: 172 LSDAMIK---AYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVY 228
L D ++K A + G+ E + IN + +++ C C M++ E G ++ A A++
Sbjct: 318 LIDGLLKGRNADAAKGLVHEMVS--HGINIKPYMYDCCIC--VMSK--E-GVMEKAKALF 370
Query: 229 QHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMN 288
+ GL Y +I+ C++ ++++ E+ +EM+K + + + Y T ++G+C +
Sbjct: 371 DGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSS 430
Query: 289 GMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAY 348
G LD Y ++ + + + YT +I+ F ++ A VL M++QG+ PD++ Y
Sbjct: 431 GDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCY 490
Query: 349 SALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKD 408
++LI G K ++++A EM G+K N + G + ++ K E ++
Sbjct: 491 NSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE 550
Query: 409 MGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGD 468
G NKV +++ CK G+V +A ++ M D+ I+ D YT ++ G K+ D
Sbjct: 551 CGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDD 610
Query: 469 ALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIE 528
A ++F+EM+ G PD+ +Y VL F++ G +QKA + + M GL PN + +NM++
Sbjct: 611 AEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLG 670
Query: 529 GLCMGGRVEEAEAFLDGLKGKCLE----NYSAMINGYCKTGHTKEAFQLFMRLSNQGVLV 584
G C G +E+A+ LD + K L Y +I+GYCK+G EAF+LF + +G++
Sbjct: 671 GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVP 730
Query: 585 KKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVF 644
L+ L D A+ +F T S + ++ LI + + + E V
Sbjct: 731 DSFVYTTLVDGCCRLNDVERAITIFGTN-KKGCASSTAPFNALINWVFKFGKTELKTEVL 789
Query: 645 NVLVDKGLT----PHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDA 700
N L+D P+ VTY +MI CK L A+++F+ M+ + P V+TYT L +
Sbjct: 790 NRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNG 849
Query: 701 HSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLI-AKL---CNTQN 756
+ K+ + + P V D ++ GI PD I Y+V+I A L T+
Sbjct: 850 YDKMGRR-AEMFP--------VFDEAI------AAGIEPDHIMYSVIINAFLKEGMTTKA 894
Query: 757 LE--DGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEM 802
L D + N + D G + T ALL G+ G+++ A +++ M
Sbjct: 895 LVLVDQMFAKNAVDD-GCKLSISTCRALLSGFAKVGEMEVAEKVMENM 941
|
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| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 146/560 (26%), Positives = 273/560 (48%)
Query: 245 IVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGM-LDLGYELLLKWEE 303
+V+K+ + + +A+ + + G P +Y+ ++ + + + + E
Sbjct: 139 LVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLE 198
Query: 304 ADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINK 363
+ + + F Y ++IR FC ++ A + ME +G +P+V Y+ LI GYCK KI+
Sbjct: 199 SQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDD 258
Query: 364 ALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVD 423
L M KG++ N +V++ GLC++G E G+ L++V Y+ ++
Sbjct: 259 GFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIK 318
Query: 424 SLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKP 483
CK G +A+++ EM + P V+ YT++I C G + A++ +M+ G P
Sbjct: 319 GYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCP 378
Query: 484 DIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFL 543
+ TY L F+Q G + +A+ +L M +G P+ VT+N +I G C+ G++E+A A L
Sbjct: 379 NERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVL 438
Query: 544 DGLKGKCLE----NYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLIL 599
+ +K K L +YS +++G+C++ EA ++ + +G+ + + LI
Sbjct: 439 EDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQ 498
Query: 600 RDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTY 659
R A L++ M+ + P + Y LI A C ++E+A + N +V+KG+ P +VTY
Sbjct: 499 RRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTY 558
Query: 660 TMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCK 719
+++I+G K + REA+ + + P VTY L + S I K S K
Sbjct: 559 SVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMK 618
Query: 720 EDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTY 779
+ +A + M +PD +Y ++I C ++ T++ E+ G TVT
Sbjct: 619 GMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTV 678
Query: 780 TALLCGYLAKGDLDRAIALV 799
AL+ +G ++ +++
Sbjct: 679 IALVKALHKEGKVNELNSVI 698
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| TAIR|locus:2095309 AT3G09060 "AT3G09060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 585 (211.0 bits), Expect = 2.1e-61, Sum P(2) = 2.1e-61
Identities = 160/637 (25%), Positives = 297/637 (46%)
Query: 200 GFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEA 259
G+ S ++ + +L E V+ + + ++ +E + VIK K +A
Sbjct: 38 GYAHSAVVYHHILRRLSETRMVNHVSRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQA 97
Query: 260 VEVFLEMEKA-GVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIR 318
++VF M + G P +Y+T + L +E A + + Y V+I+
Sbjct: 98 LDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIK 157
Query: 319 WFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKT 378
C + + EKA L M K+G PDV++YS +I+ K GK++ AL L EM+ +G+
Sbjct: 158 MSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAP 217
Query: 379 NCGVLSVILKG-LCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMIL 437
+ ++++ G L +K +A +D + N +++++ L K G V+ + +
Sbjct: 218 DVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKI 277
Query: 438 FKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQ 497
++ MK + D+ Y+++I G C G + A +F E+ E D++TYN + G F +
Sbjct: 278 WERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCR 337
Query: 498 YGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAF--LDGLKGKCLEN-- 553
G ++++ +L M+ H N V++N++I+GL G+++EA L KG +
Sbjct: 338 CGKIKESLELWRIME-HKNSVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTT 396
Query: 554 YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMI 613
Y I+G C G+ +A + + + G + + +I L + A L K M
Sbjct: 397 YGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMS 456
Query: 614 TLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLR 673
E + + + LIG L + + +A + G P +V+Y ++I G CK
Sbjct: 457 KHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFG 516
Query: 674 EARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASV-FWNEM 732
EA +M + G PD+ TY++L L G C++ +D ++ W++
Sbjct: 517 EASAFVKEMLENGWKPDLKTYSIL--------LCGL--------CRDRKIDLALELWHQF 560
Query: 733 KEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDL 792
+ G+ DV+ + +LI LC+ L+D +TV + R + VTY L+ G+ GD
Sbjct: 561 LQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDS 620
Query: 793 DRAIALVDEMSVKGIQGDDYTKSSLERGIEKARILQY 829
+RA + M G+Q D + +++ +G+ R + Y
Sbjct: 621 NRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSY 657
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| TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 610 (219.8 bits), Expect = 1.3e-60, Sum P(2) = 1.3e-60
Identities = 156/651 (23%), Positives = 304/651 (46%)
Query: 176 MIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLG 235
+I A+ +V D + + Q+ G+ ++ + + G+VD AL++ +K
Sbjct: 174 LIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSS 233
Query: 236 LSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGY 295
L + Y + I + K G + A + F E+E G+ P+ Y++ I LC LD
Sbjct: 234 LDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAV 293
Query: 296 ELLLKWEE-ADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISG 354
E+ E+ +P + +AY +I + K ++A +L +G +P V AY+ +++
Sbjct: 294 EMFEHLEKNRRVPCT-YAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTC 352
Query: 355 YCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLN 414
K GK+++AL + EM K N ++++ LC+ G + + G F N
Sbjct: 353 LRKMGKVDEALKVFEEM-KKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPN 411
Query: 415 KVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFK 474
+++VD LCK ++++A +F+EM + PD + + ++I G G++ DA +++
Sbjct: 412 VRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYE 471
Query: 475 EMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGG 534
+M + + + I Y L F +G + + M P+ N ++ + G
Sbjct: 472 KMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAG 531
Query: 535 RVEEAEAFLDGLKGKCL----ENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCN 590
E+ A + +K + +YS +I+G K G E ++LF + QG ++ + N
Sbjct: 532 EPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYN 591
Query: 591 KLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDK 650
+I N A +L + M T EP+ Y +I L + + +++A ++F K
Sbjct: 592 IVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK 651
Query: 651 GLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSS 710
+ ++V Y+ +I G+ K+ + EA + ++ Q+G+TP++ T+ L DA K
Sbjct: 652 RIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKA------ 705
Query: 711 SSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDR 770
E++ +A V + MKE+ P+ ++Y +LI LC + + E+ +
Sbjct: 706 ---------EEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQ 756
Query: 771 GLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLERGI 821
G++P T++YT ++ G G++ A AL D G D +++ G+
Sbjct: 757 GMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGL 807
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O81028 | PP171_ARATH | No assigned EC number | 0.4181 | 0.9037 | 0.9399 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00037575001 | SubName- Full=Chromosome undetermined scaffold_89, whole genome shotgun sequence; (817 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 831 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-24 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-24 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-21 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-21 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-21 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-21 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-20 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-17 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-17 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-15 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
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Score = 109 bits (273), Expect = 3e-24
Identities = 79/343 (23%), Positives = 154/343 (44%), Gaps = 26/343 (7%)
Query: 418 YDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMK 477
Y ++ + K G+V+ +F EM + + +V + +I G G++ A + M+
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534
Query: 478 EMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMK--RHGLEPNFVTHNMIIEGLCMGGR 535
KPD + +N L A Q GAV +AFD+L MK H ++P+ +T +++ G+
Sbjct: 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594
Query: 536 VEEAEAFLD-----GLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCN 590
V+ A+ +KG E Y+ +N + G A ++ + +GV + +
Sbjct: 595 VDRAKEVYQMIHEYNIKGT-PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS 653
Query: 591 KLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDK 650
L+ D + A ++ + + Y L+GA A+ ++A ++ +
Sbjct: 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI 713
Query: 651 GLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSS 710
L P + T +I C+ N L +A +V ++MK+ G+ P+ +TY++L A
Sbjct: 714 KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE-------- 765
Query: 711 SSPDALQCKEDVVDASV-FWNEMKEMGIRPDVISYTVLIAKLC 752
++D D + ++ KE GI+P+++ + LC
Sbjct: 766 --------RKDDADVGLDLLSQAKEDGIKPNLVMCRCITG-LC 799
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 4e-24
Identities = 90/441 (20%), Positives = 173/441 (39%), Gaps = 98/441 (22%)
Query: 421 IVDSLCKLGEVEKAMIL----------FKEMKDRQIVPDVVNYT-----------TMICG 459
I D + L ++EK +L FK K ++ V + + M+
Sbjct: 386 IKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445
Query: 460 YCLQGKLGD-ALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEP 518
C + D AL + + ++E G K D Y L A+ G V F++ + M G+E
Sbjct: 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA 505
Query: 519 NFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLS 578
N T + A+I+G + G +AF +
Sbjct: 506 NVHT-------------------------------FGALIDGCARAGQVAKAFGAY---- 530
Query: 579 NQGVLV-KKSSCNKLITNLLILRDNNNAL-------KLFKTMITLNAE-----PSKSMYD 625
G++ K ++++ N LI +A + F + + AE P
Sbjct: 531 --GIMRSKNVKPDRVVFNALI-----SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVG 583
Query: 626 KLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQR 685
L+ A A ++++A+ V+ ++ + + YT+ ++ + A +++DMK++
Sbjct: 584 ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643
Query: 686 GITPDVVTYTVLFDA--HSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVIS 743
G+ PD V ++ L D H+ D+ A + ++ GI+ +S
Sbjct: 644 GVKPDEVFFSALVDVAGHAG-----------------DLDKAFEILQDARKQGIKLGTVS 686
Query: 744 YTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGD-LDRAIALVDEM 802
Y+ L+ N +N + + ++ +I L P T AL+ L +G+ L +A+ ++ EM
Sbjct: 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA-LCEGNQLPKALEVLSEM 745
Query: 803 SVKGIQGDDYTKSSLERGIEK 823
G+ + T S L E+
Sbjct: 746 KRLGLCPNTITYSILLVASER 766
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-21
Identities = 71/309 (22%), Positives = 140/309 (45%), Gaps = 2/309 (0%)
Query: 221 VDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYST 280
+D AL V + ++ GL + Y +I K G + EVF EM AGV N +
Sbjct: 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGA 512
Query: 281 CIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHM--EK 338
I+G G + + ++ + +I +++A VL M E
Sbjct: 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET 572
Query: 339 QGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASA 398
+ PD AL+ G++++A ++ + IK V ++ + QKG
Sbjct: 573 HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF 632
Query: 399 TIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMIC 458
+ + + K G ++V + +VD G+++KA + ++ + + I V+Y++++
Sbjct: 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692
Query: 459 GYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEP 518
AL+L++++K + +P + T N L A + + KA ++L+ MKR GL P
Sbjct: 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752
Query: 519 NFVTHNMII 527
N +T+++++
Sbjct: 753 NTITYSILL 761
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-21
Identities = 121/583 (20%), Positives = 239/583 (40%), Gaps = 46/583 (7%)
Query: 247 IKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLK-WEEAD 305
++ALC G +++A+++ M++ V + AY LC E + A
Sbjct: 58 LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKR---AVEEGSRVCSRAL 113
Query: 306 IPLSAFAY---TVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKIN 362
+ ++ F +L A V M ++ D+++++ L+ GY K G +
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFD 169
Query: 363 KALLLHHEMTSKGIKTNCGVLSVILK---GLCQKGMASATIKQFLEFKDMGFFLNKVCYD 419
+AL L+H M G++ + +L+ G+ + F GF L+ +
Sbjct: 170 EALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF---GFELDVDVVN 226
Query: 420 VIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEM 479
++ K G+V A ++F DR D +++ MI GY G+ + L+LF M+E+
Sbjct: 227 ALITMYVKCGDVVSARLVF----DRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL 282
Query: 480 GHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEA 539
PD++T + A G + ++ Y+ + G + N +I+ G EA
Sbjct: 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342
Query: 540 EAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLIL 599
E ++ K +++AMI+GY K G +A + + + V + + +++ L
Sbjct: 343 EKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402
Query: 600 RDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTY 659
D + +KL + + + LI + + +++A VF+ + +K ++++
Sbjct: 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISW 458
Query: 660 TMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKIN--LKGSSSSPDALQ 717
T +I G N EA F M + P+ VT A ++I + G L+
Sbjct: 459 TSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLR 517
Query: 718 CK---EDVVDASVF------------WNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGIT 762
+ + ++ WN+ DV+S+ +L+ +
Sbjct: 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVE 575
Query: 763 VFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVK 805
+FN + + G+ PD VT+ +LLC G + + + M K
Sbjct: 576 LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 4e-21
Identities = 72/319 (22%), Positives = 143/319 (44%), Gaps = 7/319 (2%)
Query: 218 CGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFA 277
GKVD V+ + G+ N +T+ +I + G + +A + M V P+
Sbjct: 485 SGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV 544
Query: 278 YSTCIEGLCMNGMLDLGYELL--LKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLH 335
++ I +G +D +++L +K E I +++ + ++++A+ V
Sbjct: 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604
Query: 336 MEKQGV--VPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQK 393
+ + + P+VY + ++ + G + AL ++ +M KG+K + S ++
Sbjct: 605 IHEYNIKGTPEVY--TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA 662
Query: 394 GMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNY 453
G + + + G L V Y ++ + +KA+ L++++K ++ P V
Sbjct: 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722
Query: 454 TTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKR 513
+I C +L AL++ EMK +G P+ ITY++L A + DLL+ K
Sbjct: 723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782
Query: 514 HGLEPNFVTHNMIIEGLCM 532
G++PN V I GLC+
Sbjct: 783 DGIKPNLVMCRCIT-GLCL 800
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 6e-21
Identities = 84/395 (21%), Positives = 169/395 (42%), Gaps = 55/395 (13%)
Query: 313 YTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMT 372
+ +++ ++ A VL +++ G+ D Y+ LIS K GK++ + HEM
Sbjct: 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499
Query: 373 SKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVE 432
+ G++ N + ++D + G+V
Sbjct: 500 NAGVEANVHT-----------------------------------FGALIDGCARAGQVA 524
Query: 433 KAMILFKEMKDRQIVPDVVNYTTMI--CGYCLQGKLGDALDLFKEMKEMGH--KPDIITY 488
KA + M+ + + PD V + +I CG G + A D+ EMK H PD IT
Sbjct: 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQ--SGAVDRAFDVLAEMKAETHPIDPDHITV 582
Query: 489 NVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKG 548
L A A G V +A ++ + + ++ + + + G + A + D +K
Sbjct: 583 GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642
Query: 549 KCLEN----YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNN 604
K ++ +SA+++ G +AF++ QG+ + S + L+ ++
Sbjct: 643 KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702
Query: 605 ALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIH 664
AL+L++ + ++ P+ S + LI ALC+ ++ +A V + + GL P+ +TY++++
Sbjct: 703 ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL- 761
Query: 665 GYCKINCLREAR-----DVFNDMKQRGITPDVVTY 694
+ R+ D+ + K+ GI P++V
Sbjct: 762 ----VASERKDDADVGLDLLSQAKEDGIKPNLVMC 792
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 94.6 bits (235), Expect = 7e-20
Identities = 85/413 (20%), Positives = 168/413 (40%), Gaps = 52/413 (12%)
Query: 210 YFMNQL----VECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLE 265
Y MN++ V+CG + A ++ + N ++ +I L G+ +EA +F E
Sbjct: 159 YMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFRE 214
Query: 266 MEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNK 325
M + G + + G G +L + + F +I +
Sbjct: 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD 274
Query: 326 LEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSV 385
+E A CV M ++ V A++++++GY G +AL L++EM G+ + S+
Sbjct: 275 IEDARCVFDGMPEKTTV----AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330
Query: 386 ILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQ 445
+++ + + + GF L+ V +VD K G +E A +F M +
Sbjct: 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK- 389
Query: 446 IVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAF 505
+++++ +I GY G+ A+++F+ M G P+ +T+ + A G ++ +
Sbjct: 390 ---NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGW 446
Query: 506 DLLNYMKR-HGLEPNFVTHNMIIEGLCMGGRVEEAEAF---------------------- 542
++ M H ++P + + +IE L G ++EA A
Sbjct: 447 EIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRI 506
Query: 543 -------------LDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGV 582
L G+ + L NY ++N Y +G EA ++ L +G+
Sbjct: 507 HKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 8e-18
Identities = 96/417 (23%), Positives = 171/417 (41%), Gaps = 36/417 (8%)
Query: 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECG----KVDMALAVYQH 230
+ I+ V+ G E ++ LF+I G +++ + Y + LVE + AVY H
Sbjct: 92 SQIEKLVACGRHREALE-LFEILEAGCPFTLPASTY--DALVEACIALKSIRCVKAVYWH 148
Query: 231 LKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGM 290
++ G ++Y V+ K G + +A +F EM + N ++ T I GL G
Sbjct: 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGN 204
Query: 291 LDLGYEL-LLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAE----CVLLHMEKQGVVPDV 345
+ L WE+ + V++R + CVL K GVV D
Sbjct: 205 YREAFALFREMWEDGSDAEPR-TFVVMLRASAGLGSARAGQQLHCCVL----KTGVVGDT 259
Query: 346 YAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLE 405
+ ALI Y K G I A + M K + +L G G + + + E
Sbjct: 260 FVSCALIDMYSKCGDIEDARCVFDGMPEKTTVA----WNSMLAGYALHGYSEEALCLYYE 315
Query: 406 FKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGK 465
+D G +++ + +++ +L +E A + D+V T ++ Y G+
Sbjct: 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR 375
Query: 466 LGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNM 525
+ DA ++F M + ++I++N L + +G KA ++ M G+ PN VT
Sbjct: 376 MEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA 431
Query: 526 IIEGLCMGGRVEEA-EAFL-----DGLKGKCLENYSAMINGYCKTGHTKEAFQLFMR 576
++ G E+ E F +K + + +Y+ MI + G EA+ + R
Sbjct: 432 VLSACRYSGLSEQGWEIFQSMSENHRIKPRAM-HYACMIELLGREGLLDEAYAMIRR 487
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 75.5 bits (187), Expect = 3e-17
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 654 PHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSK 703
P +VTY +I GYCK + EA +FN+MK+RGI P+V TY++L D K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 5e-17
Identities = 122/580 (21%), Positives = 225/580 (38%), Gaps = 107/580 (18%)
Query: 174 DAMIKAYVSVGMFDEGIDILFQI-----------------------------------NR 198
+ ++ Y G FDE + + ++ R
Sbjct: 156 NVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215
Query: 199 RGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLG-LSLNEYTYVIVIKALCKKGSMQ 257
GF + N + V+CG V A V+ + R +S N +I + G
Sbjct: 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNA-----MISGYFENGECL 270
Query: 258 EAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTV-- 315
E +E+F M + V P+ ++ I + G LG E+ + + FA V
Sbjct: 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREM-----HGYVVKTGFAVDVSV 325
Query: 316 ---VIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMT 372
+I+ + +AE V ME + D +++A+ISGY K G +KAL + M
Sbjct: 326 CNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALME 381
Query: 373 SKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVE 432
+ + ++ +L G +K + G V + +++ K ++
Sbjct: 382 QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441
Query: 433 KAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLA 492
KA+ +F + ++ DV+++T++I G L + +AL F++M + KP+ +T
Sbjct: 442 KALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAAL 496
Query: 493 GAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLE 552
A A+ GA+ ++ ++ R G+ DG L
Sbjct: 497 SACARIGALMCGKEIHAHVLRTGIG-------------------------FDGF----LP 527
Query: 553 NYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKK--SSCNKLITNLLILRDNNNALKLFK 610
N A+++ Y + G A+ NQ +K S N L+T + + A++LF
Sbjct: 528 N--ALLDLYVRCGRMNYAW-------NQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFN 578
Query: 611 TMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDK-GLTPHLVTYTMMIHGYCKI 669
M+ P + + L+ A ++ + Q F+ + +K +TP+L Y ++ +
Sbjct: 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA 638
Query: 670 NCLREARDVFNDMKQRGITPDVVTYTVLFDA---HSKINL 706
L EA + N M ITPD + L +A H + L
Sbjct: 639 GKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVEL 675
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 6e-17
Identities = 82/373 (21%), Positives = 147/373 (39%), Gaps = 45/373 (12%)
Query: 229 QHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMN 288
L + + + I+ L G +EA+E+F E L
Sbjct: 76 ARLDDTQIRKSGVSLCSQIEKLVACGRHREALELF-------------------EILEAG 116
Query: 289 GMLDLG---YELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAEC----VLLHMEKQGV 341
L Y+ L+ EA I L + + W + + E + VLL K G+
Sbjct: 117 CPFTLPASTYDALV---EACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGM 173
Query: 342 VPD------------VYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKG 389
+ D + ++ +I G G +A L EM G V+L+
Sbjct: 174 LIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233
Query: 390 LCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPD 449
G A A + G + ++D K G++E A +F M ++
Sbjct: 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT---- 289
Query: 450 VVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLN 509
V + +M+ GY L G +AL L+ EM++ G D T++++ F++ ++ A
Sbjct: 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349
Query: 510 YMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKE 569
+ R G + V + +++ GR+E+A D + K L +++A+I GY G +
Sbjct: 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTK 409
Query: 570 AFQLFMRLSNQGV 582
A ++F R+ +GV
Sbjct: 410 AVEMFERMIAEGV 422
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 71.3 bits (176), Expect = 1e-15
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 448 PDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQ 497
PDVV Y T+I GYC +GK+ +AL LF EMK+ G KP++ TY++L +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 4e-15
Identities = 133/623 (21%), Positives = 237/623 (38%), Gaps = 122/623 (19%)
Query: 198 RRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLG-LSLNEYTYVIVIKALCKKGSM 256
R GF + N + V+CG V A V+ + R +S N +I + G
Sbjct: 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNA-----MISGYFENGEC 269
Query: 257 QEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTV- 315
E +E+F M + V P+ ++ I + G LG E+ + + FA V
Sbjct: 270 LEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREM-----HGYVVKTGFAVDVS 324
Query: 316 ----VIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEM 371
+I+ + +AE V ME + D +++A+ISGY K G +KAL + M
Sbjct: 325 VCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALM 380
Query: 372 TSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEV 431
+ + ++ +L G +K + G V + +++ K +
Sbjct: 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440
Query: 432 EKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVL 491
+KA+ +F + ++ DV+++T++I G L + +AL F++M + KP+ +T
Sbjct: 441 DKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAA 495
Query: 492 AGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCL 551
A A+ GA+ ++ ++ R G+ DG L
Sbjct: 496 LSACARIGALMCGKEIHAHVLRTGIG-------------------------FDGF----L 526
Query: 552 ENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKK--SSCNKLITNLLILRDNNNALKLF 609
N A+++ Y + G A+ NQ +K S N L+T + + A++LF
Sbjct: 527 PN--ALLDLYVRCGRMNYAW-------NQFNSHEKDVVSWNILLTGYVAHGKGSMAVELF 577
Query: 610 KTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDK-GLTPHLVTYTMMIHGYCK 668
M+ P + + L+ A ++ + Q F+ + +K +TP+L Y ++ +
Sbjct: 578 NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR 637
Query: 669 INCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVF 728
L EA + N M ITPD + L +A C+
Sbjct: 638 AGKLTEAYNFINKMP---ITPDPAVWGALLNA-----------------CR--------- 668
Query: 729 WNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLA 788
I V + +L E L+P++V Y LLC A
Sbjct: 669 -------------IHRHVELGELAAQHIFE-------------LDPNSVGYYILLCNLYA 702
Query: 789 KGDLDRAIALVDE-MSVKGIQGD 810
+A V + M G+ D
Sbjct: 703 DAGKWDEVARVRKTMRENGLTVD 725
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 63.2 bits (155), Expect = 8e-13
Identities = 21/49 (42%), Positives = 35/49 (71%)
Query: 483 PDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLC 531
PD++TYN L + + G V++A L N MK+ G++PN T++++I+GLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 1e-12
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 416 VCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYC 461
V Y+ ++D CK G+VE+A+ LF EMK R I P+V Y+ +I G C
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.0 bits (152), Expect = 2e-12
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 311 FAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCK 357
Y +I +C + K+E+A + M+K+G+ P+VY YS LI G CK
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 3e-12
Identities = 77/366 (21%), Positives = 150/366 (40%), Gaps = 25/366 (6%)
Query: 441 MKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMG--HKPDIITYNVLAGAFAQY 498
+ D QI V+ + I G+ +AL+LF E+ E G TY+ L A
Sbjct: 78 LDDTQIRKSGVSLCSQIEKLVACGRHREALELF-EILEAGCPFTLPASTYDALVEACIAL 136
Query: 499 GAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMI 558
+++ + +++ G EP+ N ++ G + +A D + + L ++ +I
Sbjct: 137 KSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTII 196
Query: 559 NGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAE 618
G G+ +EAF LF + G + + ++ L +L ++
Sbjct: 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV 256
Query: 619 PSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDV 678
+ LI + ++E A+ VF+ + +K V + M+ GY EA +
Sbjct: 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT----TVAWNSMLAGYALHGYSEEALCL 312
Query: 679 FNDMKQRGITPDVVTYTVLFDAHSKINL----KGSSSS------PDALQCKEDVVDASVF 728
+ +M+ G++ D T++++ S++ L K + + P + +VD
Sbjct: 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372
Query: 729 WNEMK------EMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTAL 782
W M+ + R ++IS+ LIA N + +F + G+ P+ VT+ A+
Sbjct: 373 WGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432
Query: 783 L--CGY 786
L C Y
Sbjct: 433 LSACRY 438
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.9 bits (149), Expect = 4e-12
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 239 NEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLC 286
+ TY +I CKKG ++EA+++F EM+K G+ PN + YS I+GLC
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 3e-10
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 343 PDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQ 392
PDV Y+ LI GYCK GK+ +AL L +EM +GIK N S+++ GLC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 8e-10
Identities = 81/393 (20%), Positives = 159/393 (40%), Gaps = 63/393 (16%)
Query: 410 GFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDA 469
GF ++ + ++ K G + A LF EM +R + ++ T+I G G +A
Sbjct: 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLA----SWGTIIGGLVDAGNYREA 208
Query: 470 LDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEG 529
LF+EM E G + T+ V+ A A G+ + L + + G+ + +I+
Sbjct: 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDM 268
Query: 530 LCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSC 589
G +E+A DG+ K +++M+ GY G+++EA L+ + + GV + + +
Sbjct: 269 YSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT- 327
Query: 590 NKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVD 649
F MI + + + +E A+ L+
Sbjct: 328 -------------------FSIMIRIFSRLAL---------------LEHAKQAHAGLIR 353
Query: 650 KGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGS 709
G +V T ++ Y K + +AR+VF+ M ++ +++++ L +
Sbjct: 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRG-- 407
Query: 710 SSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISY-TVLIAKLCNTQNL-EDGITVFNEI 767
A + M G+ P+ +++ VL A C L E G +F +
Sbjct: 408 -------------TKAVEMFERMIAEGVAPNHVTFLAVLSA--CRYSGLSEQGWEIFQSM 452
Query: 768 S-DRGLEPDTVTYTALLCGYLAKGDLDRAIALV 799
S + ++P + Y ++ +G LD A A++
Sbjct: 453 SENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 1e-09
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 739 PDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGY 786
PDV++Y LI C +E+ + +FNE+ RG++P+ TY+ L+ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 2e-09
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 15/65 (23%)
Query: 689 PDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLI 748
PDVVTY L D + K K V +A +NEMK+ GI+P+V +Y++LI
Sbjct: 1 PDVVTYNTLIDGYCK---------------KGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
Query: 749 AKLCN 753
LC
Sbjct: 46 DGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 8e-09
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 774 PDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSL 817
PD VTY L+ GY KG ++ A+ L +EM +GI+ + YT S L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSIL 44
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 8e-09
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 204 SICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK 252
+ + N ++ + GKV+ AL ++ +K+ G+ N YTY I+I LCK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 1e-08
Identities = 16/45 (35%), Positives = 30/45 (66%)
Query: 624 YDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCK 668
Y+ LI C+ ++E+A +FN + +G+ P++ TY+++I G CK
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 5e-08
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 657 VTYTMMIHGYCKINCLREARDVFNDMKQRGITPDV 691
VTY +I G CK + EA ++F +MK+RGI PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.5 bits (117), Expect = 8e-08
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 444 RQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMK 477
+ + PDVV Y T+I G C G++ +A++L EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-07
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 453 YTTMICGYCLQGKLGDALDLFKEMKEMGHKPDI 485
Y T+I G C G++ +AL+LFKEMKE G +PD+
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.3 bits (114), Expect = 2e-07
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 650 KGLTPHLVTYTMMIHGYCKINCLREARDVFNDMK 683
KGL P +VTY +I G C+ + EA ++ ++M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 3e-07
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 770 RGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMS 803
+GL+PD VTY L+ G G +D A+ L+DEM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 5e-07
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 339 QGVVPDVYAYSALISGYCKFGKINKALLLHHEM 371
+G+ PDV Y+ LI G C+ G++++A+ L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (109), Expect = 8e-07
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 515 GLEPNFVTHNMIIEGLCMGGRVEEAEAFLD 544
GL+P+ VT+N +I+GLC GRV+EA LD
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLD 31
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.0 bits (108), Expect = 1e-06
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 235 GLSLNEYTYVIVIKALCKKGSMQEAVEVFLEME 267
GL + TY +I LC+ G + EAVE+ EME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-06
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 657 VTYTMMIHGYCKINCLREARDVFNDMKQRGI 687
VTY +I GYCK L EA ++F +MK++G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 4e-06
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 209 NYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEK 268
N + L E ++ AL V +KRLGL N TY I++ A +K +++ + ++
Sbjct: 723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782
Query: 269 AGVTPNAFAYSTCIEGLCM 287
G+ PN CI GLC+
Sbjct: 783 DGIKPN-LVMCRCITGLCL 800
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 4e-06
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 518 PNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGK-CLEN---YSAMINGYCK 563
P+ VT+N +I+G C G+VEEA + +K + N YS +I+G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 7e-06
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 241 YTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNA 275
TY +I LCK G ++EA+E+F EM++ G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 453 YTTMICGYCLQGKLGDALDLFKEMKEMG 480
Y ++I GYC GKL +AL+LFKEMKE G
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 3e-05
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 409 MGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMK 442
G + V Y+ ++D LC+ G V++A+ L EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 346 YAYSALISGYCKFGKINKALLLHHEMTSKGI 376
Y++LISGYCK GK+ +AL L EM KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 6e-05
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 241 YTYVIVIKALCKKGSMQEAVEVFLEMEKAGV 271
TY +I CK G ++EA+E+F EM++ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 21/35 (60%), Positives = 27/35 (77%)
Query: 416 VCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDV 450
V Y+ ++D LCK G VE+A+ LFKEMK+R I PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 2e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 240 EYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTP 273
TY ++ AL K G A+ V EM+ +G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 346 YAYSALISGYCKFGKINKALLLHHEMTSKGIKTNC 380
Y+ LI G CK G++ +AL L EM +GI+ +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 311 FAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDV 345
Y +I C ++E+A + M+++G+ PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 3e-04
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 485 IITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEP 518
+ TYN L A A+ G A +L MK GL+P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 9e-04
Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 25/167 (14%)
Query: 663 IHGYCKINCLREAR-----DVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQ 717
I Y ++ LR+ R D+ DM++RG L D KI + A +
Sbjct: 374 IDAYNRL--LRDGRIKDCIDLLEDMEKRG----------LLDM-DKIY---HAKFFKACK 417
Query: 718 CKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTV 777
+ V +A F ++ P + ++ +L++ ++Q+++ + V + + GL+ D
Sbjct: 418 KQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCK 473
Query: 778 TYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLERGIEKA 824
YT L+ G +D + EM G++ + +T +L G +A
Sbjct: 474 LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 74/377 (19%), Positives = 136/377 (36%), Gaps = 61/377 (16%)
Query: 459 GYCLQGKLGDALDLFKEMKEMGHKPDIITYNVL-----------AGAFAQYGAVQKAFDL 507
C G+L AL L + M+E+ D Y L G+ +
Sbjct: 60 ALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRV-CSRALSSHPS 118
Query: 508 LNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHT 567
L + + FV ++ + G++ E + F +++ ++ GY K G+
Sbjct: 119 LGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLF----------SWNVLVGGYAKAGYF 168
Query: 568 KEAFQLFMRLSNQGVL--VKKSSCNKLITNLLILRDNNNALKLFKT------MITLNAEP 619
EA L+ R+ GV V C +LR L + ++ E
Sbjct: 169 DEALCLYHRMLWAGVRPDVYTFPC--------VLRTCGGIPDLARGREVHAHVVRFGFEL 220
Query: 620 SKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVF 679
+ + LI + ++ A+LVF D+ +++ MI GY + E ++F
Sbjct: 221 DVDVVNALITMYVKCGDVVSARLVF----DRMPRRDCISWNAMISGYFENGECLEGLELF 276
Query: 680 NDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRP 739
M++ + PD++T T + A + + K G
Sbjct: 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT---------------GFAV 321
Query: 740 DVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALV 799
DV LI + + + VF+ + + D V++TA++ GY G D+A+
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETY 377
Query: 800 DEMSVKGIQGDDYTKSS 816
M + D+ T +S
Sbjct: 378 ALMEQDNVSPDEITIAS 394
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 0.001
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 554 YSAMINGYCKTGHTKEAFQLFMRLSNQGV 582
Y+ +I+GYCK G +EA +LF + +G+
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGI 34
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 416 VCYDVIVDSLCKLGEVEKAMILFKEMKDRQI 446
V Y+ ++ CK G++E+A+ LFKEMK++ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 777 VTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDD 811
VTY L+ G G ++ A+ L EM +GI+ D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 479 MGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMK 512
G KPD++TYN L + G V +A +LL+ M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.002
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 554 YSAMINGYCKTGHTKEAFQLF--MR 576
Y+ +I+G C+ G EA +L M
Sbjct: 10 YNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 554 YSAMINGYCKTGHTKEAFQLFMRLSNQGV 582
Y+++I+GYCK G +EA +LF + +GV
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 777 VTYTALLCGYLAKGDLDRAIALVDEMSVKGI 807
VTY +L+ GY G L+ A+ L EM KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 56/259 (21%), Positives = 107/259 (41%), Gaps = 30/259 (11%)
Query: 565 GHTKEAFQLFMRLSNQGVL-VKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSM 623
G +EA +LF L + S+ + L+ + L+ ++ + + EP + M
Sbjct: 101 GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160
Query: 624 YDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMK 683
++++ + + A+ +F+ + ++ +L ++ +I G REA +F +M
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMW 216
Query: 684 QRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQC---KEDVVDASVFWNEMKEMGIRPD 740
+ G + T+ V+ A + + GS+ + L C K VV D
Sbjct: 217 EDGSDAEPRTFVVMLRASAGL---GSARAGQQLHCCVLKTGVVG---------------D 258
Query: 741 VISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVD 800
LI ++ED VF+ + E TV + ++L GY G + A+ L
Sbjct: 259 TFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY 314
Query: 801 EMSVKGIQGDDYTKSSLER 819
EM G+ D +T S + R
Sbjct: 315 EMRDSGVSIDQFTFSIMIR 333
|
Length = 697 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 831 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.94 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.85 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.85 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.84 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.79 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.73 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.72 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.67 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.66 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.64 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.61 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.61 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.6 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.6 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.59 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.59 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.59 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.59 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.59 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.58 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.58 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.58 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.57 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.57 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.57 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.55 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.55 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.52 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.5 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.5 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.49 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.48 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.46 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.46 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.45 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.44 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.43 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.42 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.42 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.42 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.41 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.4 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.4 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.4 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.37 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.36 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.33 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.33 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.32 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.31 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.31 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.31 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.29 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.28 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.24 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.22 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.21 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.21 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.19 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.18 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.16 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.16 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.14 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.13 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.13 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.12 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.12 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.11 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.09 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.05 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.99 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.93 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.86 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.84 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.8 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.77 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.76 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.75 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.74 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.7 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.69 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.69 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.69 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.64 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.64 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.59 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.56 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.54 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.53 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.53 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.53 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.52 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.52 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.51 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.49 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.48 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.47 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.45 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.45 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.43 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.43 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.37 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.31 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.3 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.27 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.27 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.18 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.14 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.09 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.02 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.98 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.93 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.92 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.9 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.88 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.87 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.87 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.82 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.76 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.75 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.74 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.74 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.71 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.7 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.68 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.65 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.61 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.6 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.58 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.56 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.56 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.56 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.56 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.55 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.54 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.53 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.52 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.5 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.49 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.49 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.49 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.49 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.48 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.48 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.48 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.47 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.46 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.45 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.45 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.43 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.43 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.41 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.41 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.39 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.36 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.36 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.35 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.34 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.34 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.3 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.29 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.27 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.26 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.19 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.18 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.18 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.17 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.17 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.11 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.1 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.09 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.04 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.02 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.9 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.84 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.82 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.77 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.76 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.71 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.71 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.64 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.59 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.56 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.51 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.49 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.47 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.36 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.35 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.3 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.25 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.22 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.21 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.21 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.18 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.16 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.14 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.13 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.12 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.1 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.09 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.99 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.97 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.93 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.82 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.75 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.72 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.7 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.67 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.66 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.63 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.59 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.53 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.44 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.39 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.38 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.22 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.08 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.07 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.02 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.98 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 94.98 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.93 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.65 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.62 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.57 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.54 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.46 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.4 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.37 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.24 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.22 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.18 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.05 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.03 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 93.99 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 93.9 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.89 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.88 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.78 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.74 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.73 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.71 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.55 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.49 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.22 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.1 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 92.83 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.59 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.59 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.53 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.38 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.23 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.19 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.01 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.94 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.9 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 91.81 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.59 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.49 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.47 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 91.38 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.1 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.09 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.0 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.91 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.91 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.88 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 90.83 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.81 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.57 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.4 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.94 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.13 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 88.94 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.83 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.67 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 88.6 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.17 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.14 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 88.14 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 88.0 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 87.99 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.8 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 87.79 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 87.34 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 87.32 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 87.29 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 86.93 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.11 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.01 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 85.59 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 85.11 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.66 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 84.03 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 83.99 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 83.64 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 83.56 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 83.44 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 83.28 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 83.22 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.09 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 82.97 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 82.82 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.46 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.44 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 82.42 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.39 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 81.9 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 81.45 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.32 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 81.09 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 81.04 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 80.97 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 80.88 | |
| PRK09687 | 280 | putative lyase; Provisional | 80.74 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 80.71 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 80.07 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-80 Score=717.59 Aligned_cols=659 Identities=18% Similarity=0.237 Sum_probs=628.8
Q ss_pred CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHH
Q 003315 114 SHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDIL 193 (831)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 193 (831)
++++..++.++..+++.|++++|..++..+.+. +.+++..+|..+++.|.+.+.++.|..++
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~------------------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 109 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQEL------------------RVPVDEDAYVALFRLCEWKRAVEEGSRVC 109 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhc------------------CCCCChhHHHHHHHHHhhCCCHHHHHHHH
Confidence 567888999999999999999999999987665 33456678889999999999999999999
Q ss_pred HHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 003315 194 FQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTP 273 (831)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 273 (831)
.++.+.+..++...+|.++..|.+.|+.+.|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|...|+.|
T Consensus 110 ~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~P 185 (857)
T PLN03077 110 SRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP 185 (857)
T ss_pred HHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999974 799999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003315 274 NAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALIS 353 (831)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 353 (831)
|..||+.++.+|+..++++.+.+++..+.+.|+.++..+++.|+.+|++.|++++|.++|++|.+ ||..+|+++|.
T Consensus 186 d~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~ 261 (857)
T PLN03077 186 DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMIS 261 (857)
T ss_pred ChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999974 68999999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHH
Q 003315 354 GYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEK 433 (831)
Q Consensus 354 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 433 (831)
+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+.+.+.+++..+.+.|..||..+|+.|+.+|++.|++++
T Consensus 262 ~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003315 434 AMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKR 513 (831)
Q Consensus 434 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 513 (831)
|.++|++|.. ||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+
T Consensus 342 A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~ 417 (857)
T PLN03077 342 AEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417 (857)
T ss_pred HHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999974 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 003315 514 HGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLI 593 (831)
Q Consensus 514 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 593 (831)
.|+.++..+++.++.+|++.|++++|.++|++|.+.+..+|+.++.+|++.|+.++|+.+|++|.. +..||..++..++
T Consensus 418 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL 496 (857)
T PLN03077 418 KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAAL 496 (857)
T ss_pred hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999986 5899999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHH
Q 003315 594 TNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLR 673 (831)
Q Consensus 594 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 673 (831)
.+|++.|+.+.+.+++..+.+.|+.+|..+++.|+++|+++|++++|.++|+.+ .||..+||+||.+|++.|+.+
T Consensus 497 ~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~ 571 (857)
T PLN03077 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGS 571 (857)
T ss_pred HHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999999999999999999999987 579999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHH
Q 003315 674 EARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMK-EMGIRPDVISYTVLIAKLC 752 (831)
Q Consensus 674 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~ 752 (831)
+|+++|++|.+.|+.||..||+.++.+|++ .|.+++|.++|+.|. +.|+.|+..+|+.++++|+
T Consensus 572 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~---------------~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~ 636 (857)
T PLN03077 572 MAVELFNRMVESGVNPDEVTFISLLCACSR---------------SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG 636 (857)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHhh---------------cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 999999999999999999999999999998 456999999999999 7899999999999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhccccc
Q 003315 753 NTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYT-KSSLERGIEKARILQ 828 (831)
Q Consensus 753 ~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~-~~~l~~~~~~~~~~~ 828 (831)
+.|++++|.+++++|. ++||..+|++|+.+|...|+.+.|....+++.+ ++|+..+ |..+.+.|.+.|+.+
T Consensus 637 r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~ 708 (857)
T PLN03077 637 RAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWD 708 (857)
T ss_pred hCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChH
Confidence 9999999999999984 899999999999999999999999999999988 7777655 555567888888864
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-75 Score=673.58 Aligned_cols=666 Identities=17% Similarity=0.245 Sum_probs=626.8
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCC
Q 003315 87 VVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGS 166 (831)
Q Consensus 87 ~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (831)
.+...+...|+++.|+.+|..+.+.|..|+..+|..++..+...+..+.+..++..+++..+
T Consensus 56 ~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------------ 117 (857)
T PLN03077 56 SQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHP------------------ 117 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCC------------------
Confidence 34455567799999999999999999999999999999999999999999999888776632
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
.++...++.++..|.+.|+++.|..+|++|. .||..+|+.++.+|.+.|++++|+++|++|...|+.||..||+.+
T Consensus 118 ~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~l 193 (857)
T PLN03077 118 SLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCV 193 (857)
T ss_pred CCCchHHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH
Confidence 2355688999999999999999999999986 468899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKL 326 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 326 (831)
++++++.+++..+.+++..|.+.|+.||..+++.++.+|++.|++++|..+|++|.. +|..+|+.++.+|++.|++
T Consensus 194 l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~ 269 (857)
T PLN03077 194 LRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGEC 269 (857)
T ss_pred HHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCH
Confidence 999999999999999999999999999999999999999999999999999999863 5789999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 003315 327 EKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEF 406 (831)
Q Consensus 327 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 406 (831)
++|.++|++|.+.|+.||..+|+.++.++++.|+++.|.+++..|.+.|..||..+++.++.+|++.|++++|.++|++|
T Consensus 270 ~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m 349 (857)
T PLN03077 270 LEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349 (857)
T ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcc
Q 003315 407 KDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDII 486 (831)
Q Consensus 407 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 486 (831)
. .||..+|+.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.+.+.|+.|+..
T Consensus 350 ~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~ 425 (857)
T PLN03077 350 E----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425 (857)
T ss_pred C----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH
Confidence 6 368999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC---CCCChHHHHHHHHh
Q 003315 487 TYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGK---CLENYSAMINGYCK 563 (831)
Q Consensus 487 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~ 563 (831)
+|+.++.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|..+|++|... +..+|+.++.+|++
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACAR 501 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhh
Confidence 99999999999999999999999986 467889999999999999999999999999854 23349999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003315 564 TGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLV 643 (831)
Q Consensus 564 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 643 (831)
.|..+.+.+++..+.+.|..++..+++.++..|++.|+.++|..+|+.+ .||..+|+.++.+|++.|+.++|.++
T Consensus 502 ~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 502 IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred hchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999886 68999999999999999999999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCH
Q 003315 644 FNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMK-QRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDV 722 (831)
Q Consensus 644 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 722 (831)
|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.+++++++ .|+.
T Consensus 577 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r---------------~G~~ 641 (857)
T PLN03077 577 FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR---------------AGKL 641 (857)
T ss_pred HHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh---------------CCCH
Confidence 9999999999999999999999999999999999999999 68999999999999999998 5669
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003315 723 VDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPD-TVTYTALLCGYLAKGDLDRAIALVDE 801 (831)
Q Consensus 723 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~ 801 (831)
++|.+++++| .++||..+|++|+.+|...|+.+.+....+++.+ +.|+ ...|..|.+.|...|++++|.++.+.
T Consensus 642 ~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 642 TEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred HHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHH
Confidence 9999999988 4799999999999999999999999999999987 4665 66778888999999999999999999
Q ss_pred HHhCCCCCCH
Q 003315 802 MSVKGIQGDD 811 (831)
Q Consensus 802 ~~~~g~~pd~ 811 (831)
|.++|+.++.
T Consensus 717 M~~~g~~k~~ 726 (857)
T PLN03077 717 MRENGLTVDP 726 (857)
T ss_pred HHHcCCCCCC
Confidence 9999988654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-66 Score=585.02 Aligned_cols=547 Identities=17% Similarity=0.223 Sum_probs=446.2
Q ss_pred CcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 003315 202 VWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGL-SLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYST 280 (831)
Q Consensus 202 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 280 (831)
.++...|..+...+.+.|++++|+++|++|.+.|+ +++..+++.++.+|.+.|..++|+.+|+.|.. ||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 45677788888888899999999999999988774 46777788888899999999999999988863 89999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003315 281 CIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGK 360 (831)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 360 (831)
++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCcCHhhHHHHHHHHHhcCCHHHHHHHH
Q 003315 361 INKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKD--MGFFLNKVCYDVIVDSLCKLGEVEKAMILF 438 (831)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 438 (831)
+++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|.+|.. .++.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999876 578889999999999999999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003315 439 KEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEP 518 (831)
Q Consensus 439 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 518 (831)
++|.+.++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999888899999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 003315 519 NFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLI 598 (831)
Q Consensus 519 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 598 (831)
+..+|+.+|.+|++.|++++|.++|+ +|.+.|..||..+|+.++.+|++
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~-------------------------------eM~~~g~~PdvvtyN~LI~gy~k 731 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYE-------------------------------DIKSIKLRPTVSTMNALITALCE 731 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHH-------------------------------HHHHcCCCCCHHHHHHHHHHHHH
Confidence 98888888887777776666655554 45555666677777777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 003315 599 LRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDV 678 (831)
Q Consensus 599 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 678 (831)
.|++++|.+++++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|++++..|. +++++|..+
T Consensus 732 ~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l 809 (1060)
T PLN03218 732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACAL 809 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhh
Confidence 777777777777777777777777777777777777777777777777777777777777777775433 245555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 003315 679 FNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLE 758 (831)
Q Consensus 679 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 758 (831)
.+.+.... + +... ....-.++|..+|++|.+.|+.||..+|+.++.++++.+..+
T Consensus 810 ~~~v~~f~--~----------g~~~-------------~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~ 864 (1060)
T PLN03218 810 GEPVVSFD--S----------GRPQ-------------IENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDAT 864 (1060)
T ss_pred hhhhhhhh--c----------cccc-------------cccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHH
Confidence 44433210 0 0000 001224568888888888888888888888887777888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003315 759 DGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDY 812 (831)
Q Consensus 759 ~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~ 812 (831)
.+.++++.|...+..|+..+|++|+.++.+. .++|..++++|...|+.|+..
T Consensus 865 ~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 865 LRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 8888888887777778888888888887432 357888888888888888774
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-65 Score=573.60 Aligned_cols=546 Identities=17% Similarity=0.236 Sum_probs=492.6
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 168 LLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGF-VWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
.+...|..+...+++.|++++|+++|++|.+.|. .++...++.++..+.+.|..++|..+|+.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 3456778888889999999999999999999985 46777788899999999999999999999874 899999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKL 326 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 326 (831)
+.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 003315 327 EKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTS--KGIKTNCGVLSVILKGLCQKGMASATIKQFL 404 (831)
Q Consensus 327 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 404 (831)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 6899999999999999999999999999999
Q ss_pred HHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCC
Q 003315 405 EFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPD 484 (831)
Q Consensus 405 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 484 (831)
.|.+.++.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhc
Q 003315 485 IITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKT 564 (831)
Q Consensus 485 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 564 (831)
..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~e--------------------------- 736 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP--------------------------- 736 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH---------------------------
Confidence 99999999999999999999999999999999999998888777776665555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003315 565 GHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVF 644 (831)
Q Consensus 565 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 644 (831)
+|.++|++|...|..||..+|..++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|. +++++|..+.
T Consensus 737 ----eAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~ 810 (1060)
T PLN03218 737 ----KALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALG 810 (1060)
T ss_pred ----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhh
Confidence 5555666777788899999999999999999999999999999999999999999999987654 2456665554
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHH
Q 003315 645 NVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVD 724 (831)
Q Consensus 645 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (831)
+.+...+. +......+..++|+.+|++|++.|+.||..||+.++..+++ .++...
T Consensus 811 ~~v~~f~~----------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~---------------~~~~~~ 865 (1060)
T PLN03218 811 EPVVSFDS----------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQL---------------PHDATL 865 (1060)
T ss_pred hhhhhhhc----------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc---------------cccHHH
Confidence 44432210 11111223456799999999999999999999999955543 566888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 003315 725 ASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTV 777 (831)
Q Consensus 725 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~ 777 (831)
+..++++|...+..|+..+|+++|+++++. .++|+.++++|.+.|+.|+..
T Consensus 866 ~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 866 RNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 899999988888899999999999998543 468999999999999999975
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-59 Score=531.94 Aligned_cols=512 Identities=20% Similarity=0.299 Sum_probs=419.9
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 003315 238 LNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAG-VTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVV 316 (831)
Q Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 316 (831)
.+..+|+.++.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 344566666666666666777777776666543 5566677777777777777777777777777777777777777777
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 003315 317 IRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMA 396 (831)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 396 (831)
+.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|+++|++|.+.|+.|+..++..++.+|...|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 7777777777777777777753 577788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHH
Q 003315 397 SATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEM 476 (831)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 476 (831)
+.+.+++..+.+.|..+|..+|+.|+++|++.|++++|.++|++|.. +|..+|+.+|.+|++.|++++|+++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 88888888888888888999999999999999999999999999975 48999999999999999999999999999
Q ss_pred HHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHH
Q 003315 477 KEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSA 556 (831)
Q Consensus 477 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 556 (831)
.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|++||..+++.++.+|++.|++++|.++|++|.+.+..+||.
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~ 396 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNA 396 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887766666777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003315 557 MINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEE 636 (831)
Q Consensus 557 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 636 (831)
|+.+|++.|+.++|+++|++|.+ .|+.||..||+.++.+|.+.|+
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~-----------------------------------~g~~Pd~~T~~~ll~a~~~~g~ 441 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIA-----------------------------------EGVAPNHVTFLAVLSACRYSGL 441 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-----------------------------------hCCCCCHHHHHHHHHHHhcCCc
Confidence 77777777766666666655554 4567899999999999999999
Q ss_pred HHHHHHHHHHHHH-CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCch
Q 003315 637 MEQAQLVFNVLVD-KGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDA 715 (831)
Q Consensus 637 ~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~ 715 (831)
+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|+.++.+|..
T Consensus 442 ~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~------------ 506 (697)
T PLN03081 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRI------------ 506 (697)
T ss_pred HHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHH------------
Confidence 9999999999985 689999999999999999999999999998876 478999999999999987
Q ss_pred hhcccCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHH-------HHHH
Q 003315 716 LQCKEDVVDASVFWNEMKEMGIRPD-VISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTV-TYTAL-------LCGY 786 (831)
Q Consensus 716 ~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~-~~~~l-------~~~~ 786 (831)
.++++.|..+++++.+ +.|+ ..+|+.++.+|++.|++++|.+++++|.+.|++..+. +|..+ +.+-
T Consensus 507 ---~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d 581 (697)
T PLN03081 507 ---HKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGD 581 (697)
T ss_pred ---cCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCC
Confidence 5678899999888864 4554 5699999999999999999999999999999865432 22111 1110
Q ss_pred Hhc----CCHHHHHHHHHHHHhCCCCCCHH
Q 003315 787 LAK----GDLDRAIALVDEMSVKGIQGDDY 812 (831)
Q Consensus 787 ~~~----g~~~~A~~~~~~~~~~g~~pd~~ 812 (831)
..+ .-++...++..+|.+.|..||..
T Consensus 582 ~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 582 RLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred CCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 011 11355667888899999999854
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-58 Score=522.84 Aligned_cols=601 Identities=19% Similarity=0.260 Sum_probs=486.8
Q ss_pred CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHH
Q 003315 115 HNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILF 194 (831)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 194 (831)
.+..+|+.++..+.+.|++++|..++..+.... +..++..+|+.++.+|.+.++++.|..++.
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~-----------------~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~ 147 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGC-----------------PFTLPASTYDALVEACIALKSIRCVKAVYW 147 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcC-----------------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 456688999999999999999999998765432 234577899999999999999999999999
Q ss_pred HHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 003315 195 QINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPN 274 (831)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 274 (831)
.+.+.|+.||..+++.++..|.+.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.+.|+.|+
T Consensus 148 ~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~ 223 (697)
T PLN03081 148 HVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAE 223 (697)
T ss_pred HHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999964 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003315 275 AFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISG 354 (831)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 354 (831)
..+|+.++.++++.|+.+.+.+++..+.+.|+.+|..+++.|+.+|++.|++++|.++|++|.+ +|..+|+++|.+
T Consensus 224 ~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~ 299 (697)
T PLN03081 224 PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAG 299 (697)
T ss_pred hhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999964 589999999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHH
Q 003315 355 YCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKA 434 (831)
Q Consensus 355 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 434 (831)
|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..+.+.|..+|..+|+.|+++|++.|++++|
T Consensus 300 y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A 379 (697)
T PLN03081 300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 003315 435 MILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKR- 513 (831)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 513 (831)
.++|++|.+ ||..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|+.++|.++|+.|.+
T Consensus 380 ~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 380 RNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred HHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 999999875 588899999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 003315 514 HGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLI 593 (831)
Q Consensus 514 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 593 (831)
.|+.|+..+|+.++.+|++.|++++|.++++++
T Consensus 456 ~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----------------------------------------------- 488 (697)
T PLN03081 456 HRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----------------------------------------------- 488 (697)
T ss_pred cCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-----------------------------------------------
Confidence 688899888888888888888888777665432
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHH
Q 003315 594 TNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLR 673 (831)
Q Consensus 594 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 673 (831)
+..|+..+|+.|+.+|...|+++.|..+++++.+.++. +..+|+.|++.|++.|+++
T Consensus 489 ----------------------~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 489 ----------------------PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred ----------------------CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhCCCHH
Confidence 24789999999999999999999999999999765332 5779999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--
Q 003315 674 EARDVFNDMKQRGITPD-VVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAK-- 750 (831)
Q Consensus 674 ~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-- 750 (831)
+|.+++++|.+.|++.. ..+|..+-.. .......+..+ ....+-++...++..+|++.|+.||......=+.-
T Consensus 546 ~A~~v~~~m~~~g~~k~~g~s~i~~~~~---~~~f~~~d~~h-~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~ 621 (697)
T PLN03081 546 EAAKVVETLKRKGLSMHPACTWIEVKKQ---DHSFFSGDRLH-PQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDE 621 (697)
T ss_pred HHHHHHHHHHHcCCccCCCeeEEEECCe---EEEEccCCCCC-ccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHH
Confidence 99999999999998643 2222111000 00000000000 01223356677788888999999986532100000
Q ss_pred -----HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhc
Q 003315 751 -----LCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGI-QGDDYTKSSLERGIEKA 824 (831)
Q Consensus 751 -----~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~pd~~~~~~l~~~~~~~ 824 (831)
+....++.-|..++. .+|...+ .++.-+.-.||-..|.++..+...+.| .-|..-+++...|-+.+
T Consensus 622 ~~~~~~~hsekla~a~~l~~------~~~~~~i--~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc 693 (697)
T PLN03081 622 EKVSGRYHSEKLAIAFGLIN------TSEWTPL--QITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSC 693 (697)
T ss_pred HHHHHHhccHHHHHHhhCcc------CCCCCeE--EEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccc
Confidence 000001111111110 1111110 112334456777888888888776654 34555566655555555
Q ss_pred cc
Q 003315 825 RI 826 (831)
Q Consensus 825 ~~ 826 (831)
|+
T Consensus 694 ~d 695 (697)
T PLN03081 694 GD 695 (697)
T ss_pred cc
Confidence 54
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=401.17 Aligned_cols=714 Identities=13% Similarity=0.047 Sum_probs=553.0
Q ss_pred CCCChHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHH----
Q 003315 80 SYLNTREVVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEAT---- 155 (831)
Q Consensus 80 ~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---- 155 (831)
...........++...|+++.|+..++.+...+ +.+...+..++.++...|++++|...+..++...|.......
T Consensus 157 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 235 (899)
T TIGR02917 157 RSLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALAT 235 (899)
T ss_pred CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 334445555566667788888888888776543 346677777777888888888888888887776553221111
Q ss_pred ------------HHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhH
Q 003315 156 ------------DLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDM 223 (831)
Q Consensus 156 ------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 223 (831)
..++.+... .+.++......+..+...|++++|+..|+++.+.++. +...+..+...+...|++++
T Consensus 236 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~ 313 (899)
T TIGR02917 236 ILIEAGEFEEAEKHADALLKK-APNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQ 313 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHH
Confidence 111111111 1223344455566667778888888888887776543 34445556667778888888
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003315 224 ALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEE 303 (831)
Q Consensus 224 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (831)
|...|+.+.+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.|++++|.+.|+++.+
T Consensus 314 A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 391 (899)
T TIGR02917 314 AYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATE 391 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 888888877653 4456677777788888888888888888887654 44667778888888888888888888888887
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhH
Q 003315 304 ADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVL 383 (831)
Q Consensus 304 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 383 (831)
.+ |.+...+..+...+...|++++|.+.++.+.+..+. .......++..+.+.|++++|..+++.+.... +.+..++
T Consensus 392 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 468 (899)
T TIGR02917 392 LD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLH 468 (899)
T ss_pred cC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHH
Confidence 64 556777888888888888888888888888876543 34455667788888889999988888887653 3456778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 003315 384 SVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQ 463 (831)
Q Consensus 384 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 463 (831)
..+...+...|+.++|.+.|+++.+.... +...+..++..+...|++++|.+.++++..... .+...+..+...+.+.
T Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 546 (899)
T TIGR02917 469 NLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRT 546 (899)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHc
Confidence 88888888999999999999988876433 556677788888899999999999998876543 3667788888888889
Q ss_pred CChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003315 464 GKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFL 543 (831)
Q Consensus 464 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 543 (831)
|+.++|...++++...++ .+...+..++..+...|++++|..+++.+.+.. +.+..++..+..++.+.|++++|...+
T Consensus 547 ~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 624 (899)
T TIGR02917 547 GNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSF 624 (899)
T ss_pred CCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999877654 366677788888999999999999999988754 567788888888999999999999999
Q ss_pred HHhhhCCCCC---hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003315 544 DGLKGKCLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPS 620 (831)
Q Consensus 544 ~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 620 (831)
+++.+.+|.. +..++..+.+.|++++|...++++.+..+. +..++..++..+...|++++|..+++.+.... +.+
T Consensus 625 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 702 (899)
T TIGR02917 625 KKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKA 702 (899)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 9888776654 777888888999999999999998887654 67788888899999999999999999988775 556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003315 621 KSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDA 700 (831)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 700 (831)
...+..++..+...|++++|...|+.+.+.+ |+..++..++.++.+.|++++|.+.++++.+.. +.+...+..+...
T Consensus 703 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~ 779 (899)
T TIGR02917 703 ALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAEL 779 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 7778888899999999999999999998864 455777788899999999999999999988752 3455666666666
Q ss_pred hhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 003315 701 HSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYT 780 (831)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~ 780 (831)
+.. .++.++|..+|+++.+.. +++...++.+++.+.+.|+ ++|+++++++.+. .+.++.++.
T Consensus 780 ~~~---------------~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~-~~~~~~~~~ 841 (899)
T TIGR02917 780 YLA---------------QKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL-APNIPAILD 841 (899)
T ss_pred HHH---------------CcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh-CCCCcHHHH
Confidence 654 577999999999998764 4567789999999999999 8899999999875 333577888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccccc
Q 003315 781 ALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLERGIEKARILQY 829 (831)
Q Consensus 781 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~~~~~~ 829 (831)
.++..+...|++++|.++++++.+.+.. +..++..+..++.+.|+++.
T Consensus 842 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~ 889 (899)
T TIGR02917 842 TLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAE 889 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999999986533 78888899999999998754
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=393.78 Aligned_cols=707 Identities=13% Similarity=0.067 Sum_probs=410.2
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHH--------
Q 003315 87 VVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLI-------- 158 (831)
Q Consensus 87 ~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-------- 158 (831)
.....+...|+++.|+..|..+.+.. +.++..+..++.++...|++++|...+.++++..++.. .....+
T Consensus 27 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~a~~~~~~g 104 (899)
T TIGR02917 27 EAAKSYLQKNKYKAAIIQLKNALQKD-PNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKN-QVLPLLARAYLLQG 104 (899)
T ss_pred HHHHHHHHcCChHhHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChh-hhHHHHHHHHHHCC
Confidence 33455556677777777777666443 23666666677777777777777777776666544321 111111
Q ss_pred ------HHHh---cCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHH
Q 003315 159 ------EALC---GEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQ 229 (831)
Q Consensus 159 ------~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 229 (831)
..+. ....+.....+..++..+...|++++|...|+++.+.++. +..++..++..+...|++++|..+++
T Consensus 105 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~ 183 (899)
T TIGR02917 105 KFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR-SLYAKLGLAQLALAENRFDEARALID 183 (899)
T ss_pred CHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 0110 1122334567777888888888888888888888777643 56677777788888888888888888
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 003315 230 HLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLS 309 (831)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 309 (831)
++.+.. +++...+..+...+...|++++|.+.|+++.+.. +.+..++..++..+...|++++|...++.+.+.. +.+
T Consensus 184 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 260 (899)
T TIGR02917 184 EVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKA-PNS 260 (899)
T ss_pred HHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 877653 4566677777777888888888888888877654 4456677777777777888888887777777653 334
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 003315 310 AFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKG 389 (831)
Q Consensus 310 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 389 (831)
...+......+...|++++|...|+++.+.++. +...+..+...+...|++++|...++.+.+... .+......+...
T Consensus 261 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~ 338 (899)
T TIGR02917 261 PLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASI 338 (899)
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHH
Confidence 444444455555666666666666666654322 222333344445555555555555555554322 123334444445
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH-----------
Q 003315 390 LCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMIC----------- 458 (831)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~----------- 458 (831)
+...|++++|...+..+..... .+...+..+...+.+.|++++|.+.|+++.+... .+...+..+..
T Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 416 (899)
T TIGR02917 339 QLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEA 416 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHH
Confidence 5555555555555555544332 2344444555555555555555555555443321 13333444444
Q ss_pred -----------------------HHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003315 459 -----------------------GYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHG 515 (831)
Q Consensus 459 -----------------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 515 (831)
.+.+.|++++|..+++++.... +.+..++..+...+...|++++|.+.++++.+..
T Consensus 417 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 495 (899)
T TIGR02917 417 IADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE 495 (899)
T ss_pred HHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 4444455555555555444432 1244455555555555555555555555555442
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 003315 516 LEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKL 592 (831)
Q Consensus 516 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 592 (831)
+.+...+..+...+...|++++|.+.++++...+|.. +..++..+.+.|++++|...++++.+.++. +...+..+
T Consensus 496 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 573 (899)
T TIGR02917 496 -PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALAL 573 (899)
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHH
Confidence 3334444455555555566666666655555544433 444555555566666666666665554432 44455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH
Q 003315 593 ITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCL 672 (831)
Q Consensus 593 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 672 (831)
+..+...|++++|..+++.+.+.. +.+..+|..++.+|...|++++|...|+++.+.... +...+..++..|.+.|++
T Consensus 574 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 651 (899)
T TIGR02917 574 AQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNY 651 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCH
Confidence 666666666666666666665533 344555666666666666666666666666654322 455566666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003315 673 REARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLC 752 (831)
Q Consensus 673 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 752 (831)
++|...|+++.+.. +.+..++..+...+.. .+++++|.++++.+.+.+ +++...+..++..+.
T Consensus 652 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~---------------~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 714 (899)
T TIGR02917 652 AKAITSLKRALELK-PDNTEAQIGLAQLLLA---------------AKRTESAKKIAKSLQKQH-PKAALGFELEGDLYL 714 (899)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH---------------cCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHH
Confidence 66666666665531 2234444455444443 455666777776666543 344556666666777
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccc
Q 003315 753 NTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLERGIEKARILQ 828 (831)
Q Consensus 753 ~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~~~~~ 828 (831)
+.|++++|++.++++.+. .|+..++..++.++.+.|++++|.+.++++.+. .+.+...+..+...+.+.|+++
T Consensus 715 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~ 787 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYD 787 (899)
T ss_pred HCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHH
Confidence 777777777777777653 344456666667777777777777777776663 2334445555666666666543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-29 Score=299.95 Aligned_cols=651 Identities=12% Similarity=0.019 Sum_probs=379.9
Q ss_pred HHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcch
Q 003315 90 KLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLL 169 (831)
Q Consensus 90 ~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (831)
.+....++++.|.+.+.++....+ .++.++..+++++...|+.++|...+.++++..|+.. .+..+...+. -..+.
T Consensus 36 ~~~~~~~~~d~a~~~l~kl~~~~p-~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~-~~~~~~~~~~--~~~~~ 111 (1157)
T PRK11447 36 RLGEATHREDLVRQSLYRLELIDP-NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSN-AYRSSRTTML--LSTPE 111 (1157)
T ss_pred HHHHhhCChHHHHHHHHHHHccCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHH--hcCCc
Confidence 455677999999999999986543 3899999999999999999999999999999866532 2222111111 11223
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChh-hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSIC-SCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
......+++.+.+.|++++|+..|+++.+.+++ +.. ............|+.++|++.|+++.+.. |.++..+..+..
T Consensus 112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ 189 (1157)
T PRK11447 112 GRQALQQARLLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLAL 189 (1157)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 334567788899999999999999999887543 332 22122222334589999999999999864 557778889999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH--------------------HHHHHhcCChhHHHHHHHHHHHCCCCC
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTC--------------------IEGLCMNGMLDLGYELLLKWEEADIPL 308 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l--------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~ 308 (831)
.+...|++++|++.++++.+... .+...-... +..+-.....+.|...+.+.......|
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~-~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp 268 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPA-GRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADP 268 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCC-chHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCc
Confidence 99999999999999999876421 111111111 111111112333444444433321112
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-hhH----
Q 003315 309 SAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNC-GVL---- 383 (831)
Q Consensus 309 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~---- 383 (831)
.. ........+...|++++|+..|++..+..+. +...+..+..+|.+.|++++|+..|++.++....... ..+
T Consensus 269 ~~-~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 269 AF-RARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred ch-HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 21 1123456667788888888888888876443 6777788888888888888888888888765433211 111
Q ss_pred --------HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 003315 384 --------SVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTT 455 (831)
Q Consensus 384 --------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 455 (831)
......+.+.|++++|+..|+++....+. +...+..+..++...|++++|++.|+++.+... .+...+..
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~ 424 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRG 424 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 11233455667777777777777665432 445556666777777777777777777665422 23344444
Q ss_pred HHHHHHccCChhhHHHHHHHHHHcCCC--------CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003315 456 MICGYCLQGKLGDALDLFKEMKEMGHK--------PDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMII 527 (831)
Q Consensus 456 li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 527 (831)
+...|. .++.++|...++.+...... .....+..+...+...|++++|++.++++++.. +.+...+..+.
T Consensus 425 L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA 502 (1157)
T PRK11447 425 LANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLA 502 (1157)
T ss_pred HHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 555443 34566776666554322100 011223444555666667777777776666653 33455555666
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHH
Q 003315 528 EGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNN 604 (831)
Q Consensus 528 ~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 604 (831)
..|.+.|++++|+..++++....|.. +..+...+...+++++|+..++++......++...+.
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~-------------- 568 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELA-------------- 568 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHH--------------
Confidence 66666677777776666666555543 3333344455666666666666543221111100000
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003315 605 ALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQ 684 (831)
Q Consensus 605 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 684 (831)
.+ .....+..+...+...|+.++|..+++. .+++...+..+...+.+.|++++|+..|++.++
T Consensus 569 -----~~-------l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~ 631 (1157)
T PRK11447 569 -----QR-------LQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT 631 (1157)
T ss_pred -----HH-------HhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00 0000112234445555555555555541 122344445555555555666666666655554
Q ss_pred CCCCC-CHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 003315 685 RGITP-DVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRP-DVISYTVLIAKLCNTQNLEDGIT 762 (831)
Q Consensus 685 ~~~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 762 (831)
. .| +...+..+...+.. .+++++|.+.++.+.+. .| +...+..+..++...|++++|.+
T Consensus 632 ~--~P~~~~a~~~la~~~~~---------------~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 632 R--EPGNADARLGLIEVDIA---------------QGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred h--CCCCHHHHHHHHHHHHH---------------CCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHH
Confidence 3 23 23333344444333 34455555555554432 22 23344556666667777777777
Q ss_pred HHHHHHHCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 763 VFNEISDRGL--EP---DTVTYTALLCGYLAKGDLDRAIALVDEMS 803 (831)
Q Consensus 763 ~~~~~~~~g~--~p---d~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 803 (831)
+++++.+..- .| +..++..+...+...|+.++|++.|++..
T Consensus 693 ~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 693 TFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777765321 11 12345555666777777777777777664
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-27 Score=284.46 Aligned_cols=622 Identities=11% Similarity=0.004 Sum_probs=456.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhH--------
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTY-------- 243 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-------- 243 (831)
.....++.+...++.+.|.+.+.++....+. ++.++..++..+.+.|+.++|.+.++++.+.. |.+...+
T Consensus 30 ~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~ 107 (1157)
T PRK11447 30 QLLEQVRLGEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHh
Confidence 4567778888999999999999999988755 78888889999999999999999999998865 3333322
Q ss_pred --------HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHH
Q 003315 244 --------VIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFA-YSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYT 314 (831)
Q Consensus 244 --------~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 314 (831)
..+.+.+.+.|++++|++.|+++.+.+ +|+... ...........|+.++|++.++++.+.. |.+...+.
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~ 185 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRN 185 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 334456788999999999999998753 344321 1111222334689999999999999985 67788899
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HHH-----------------HHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003315 315 VVIRWFCDQNKLEKAECVLLHMEKQGVVPD--VYA-----------------YSALISGYCKFGKINKALLLHHEMTSKG 375 (831)
Q Consensus 315 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~-----------------~~~li~~~~~~~~~~~A~~~~~~~~~~~ 375 (831)
.+...+...|+.++|.+.++++.+...... ... +...+..+-.....+.|...+.......
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~ 265 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL 265 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc
Confidence 999999999999999999999876421100 001 1111111222223445555555554433
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHH
Q 003315 376 IKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVP-DVVNYT 454 (831)
Q Consensus 376 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~ 454 (831)
..|+.. .......+...|++++|+..|++.++..+. +...+..+..++.+.|++++|+..|++..+..... ....|.
T Consensus 266 ~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~ 343 (1157)
T PRK11447 266 ADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWE 343 (1157)
T ss_pred cCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHH
Confidence 333322 123456677899999999999999887543 67888899999999999999999999988753321 111121
Q ss_pred ------------HHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003315 455 ------------TMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVT 522 (831)
Q Consensus 455 ------------~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 522 (831)
.....+.+.|++++|...|+++.+..+. +...+..+...+...|++++|++.++++++.. +.+...
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a 421 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNA 421 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 2234567899999999999999987543 56677788899999999999999999999864 445666
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCC------------CCChHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHH
Q 003315 523 HNMIIEGLCMGGRVEEAEAFLDGLKGKC------------LENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCN 590 (831)
Q Consensus 523 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 590 (831)
+..+...+. .++.++|..+++.+.... ...+..++..+...|++++|++.|+++.+..+. ++..+.
T Consensus 422 ~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~ 499 (1157)
T PRK11447 422 VRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTY 499 (1157)
T ss_pred HHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 666776664 467899999888765432 122556778888999999999999999998765 677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh---------HHHH
Q 003315 591 KLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLV---------TYTM 661 (831)
Q Consensus 591 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---------~~~~ 661 (831)
.+...+...|++++|...++++.+.. +.+...+..+...+...|+.++|...++.+......++.. .+..
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~ 578 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLE 578 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHH
Confidence 99999999999999999999998764 3345555555566788999999999998875432222221 2234
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCH
Q 003315 662 MIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDV 741 (831)
Q Consensus 662 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 741 (831)
+...+...|+.++|+.+++. .+++...+..+-..+. ..+++++|+..+++..+.. +.+.
T Consensus 579 ~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~---------------~~g~~~~A~~~y~~al~~~-P~~~ 637 (1157)
T PRK11447 579 TANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQ---------------QRGDYAAARAAYQRVLTRE-PGNA 637 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHH---------------HcCCHHHHHHHHHHHHHhC-CCCH
Confidence 56788899999999999882 2233334444444443 3688999999999999753 3356
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C----CHHHHH
Q 003315 742 ISYTVLIAKLCNTQNLEDGITVFNEISDRGLEP-DTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQ-G----DDYTKS 815 (831)
Q Consensus 742 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p----d~~~~~ 815 (831)
..+..++.++...|++++|++.++++.+. .| +..++..+..++...|++++|.++++++....-. | +...+.
T Consensus 638 ~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~ 715 (1157)
T PRK11447 638 DARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLR 715 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHH
Confidence 78999999999999999999999998863 44 4667788899999999999999999999874211 2 123455
Q ss_pred HHHHHHHhcccc
Q 003315 816 SLERGIEKARIL 827 (831)
Q Consensus 816 ~l~~~~~~~~~~ 827 (831)
.+.+.+.+.|+.
T Consensus 716 ~~a~~~~~~G~~ 727 (1157)
T PRK11447 716 DAARFEAQTGQP 727 (1157)
T ss_pred HHHHHHHHcCCH
Confidence 556666666554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-25 Score=254.00 Aligned_cols=648 Identities=10% Similarity=0.001 Sum_probs=406.4
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcC
Q 003315 85 REVVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGE 164 (831)
Q Consensus 85 ~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (831)
...-..++..+|+++.|+..|+.+.+..+. ++.++..+++++...|+.++|...+++.++.+|.
T Consensus 47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~--------------- 110 (987)
T PRK09782 47 RLDKALKAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG--------------- 110 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc---------------
Confidence 333446667779999999999999876544 6999999999999999999999999999988553
Q ss_pred CCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHH--------HHHcCChhHHHHHHHHHHhcCC
Q 003315 165 GSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQ--------LVECGKVDMALAVYQHLKRLGL 236 (831)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~~~ 236 (831)
+...+..++ ..+++++|+.+|+++.+..+. +..++..+... |.+. ++|.+.++ ......
T Consensus 111 ----n~~~~~~La----~i~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~ 177 (987)
T PRK09782 111 ----DARLERSLA----AIPVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAA 177 (987)
T ss_pred ----cHHHHHHHH----HhccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCC
Confidence 233333332 229999999999999998755 66667666666 5555 55555555 333222
Q ss_pred CCChhhHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCChhhHH
Q 003315 237 SLNEYTYV-IVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCM-NGMLDLGYELLLKWEEADIPLSAFAYT 314 (831)
Q Consensus 237 ~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~ 314 (831)
.|++.+.. .+.+.|.+.|++++|++.++++.+.+ +.+......|..+|.. .++ +++..+++. ....++..+.
T Consensus 178 ~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ 251 (987)
T PRK09782 178 SPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRI 251 (987)
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHH
Confidence 33444444 44899999999999999999999986 4455557777778887 466 777777553 2335788999
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChH-HHHHHHHHHHhCCCCCCH-hhHHHHHHHHH
Q 003315 315 VVIRWFCDQNKLEKAECVLLHMEKQGVV-PDVYAYSALISGYCKFGKIN-KALLLHHEMTSKGIKTNC-GVLSVILKGLC 391 (831)
Q Consensus 315 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~~~~~-~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~ 391 (831)
.++..|.+.|+.++|.++++++...-.. |+..+|.-++ .+.+... .|..-|.+ ...++. ......+..+.
T Consensus 252 ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l---~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 324 (987)
T PRK09782 252 TYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLL---SKYSANPVQALANYTV----QFADNRQYVVGATLPVLL 324 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHH---HhccCchhhhccchhh----hhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998654222 4444443322 2222221 11111111 000000 01112234444
Q ss_pred hcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhH
Q 003315 392 QKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSL--CKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDA 469 (831)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 469 (831)
+.++++.+.++.. ..|.... ...... ...+...++...++.|.... +-+......+.....++|+.++|
T Consensus 325 ~~~~~~~~~~~~~------~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a 395 (987)
T PRK09782 325 KEGQYDAAQKLLA------TLPANEM--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREA 395 (987)
T ss_pred hccHHHHHHHHhc------CCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHH
Confidence 5555553333211 1111111 111111 12233444444444443321 11222333333334455555555
Q ss_pred HHHHHHHHHcC--CCCCcchHHHHHHHHHhcCC-------------------------HHHHH---HHHHHHHHCCCCC-
Q 003315 470 LDLFKEMKEMG--HKPDIITYNVLAGAFAQYGA-------------------------VQKAF---DLLNYMKRHGLEP- 518 (831)
Q Consensus 470 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~-------------------------~~~a~---~~~~~~~~~~~~~- 518 (831)
.++|+...... -.++......++..|.+.+. ..++. ..+...... .++
T Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~ 474 (987)
T PRK09782 396 ADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPS 474 (987)
T ss_pred HHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCC
Confidence 55555554420 11111222244444444433 22222 222222222 134
Q ss_pred -CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 003315 519 -NFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGY--CKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITN 595 (831)
Q Consensus 519 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 595 (831)
+...+..+..++.. ++.++|...+.+.....|+.++.+..++ ...|++++|...|+++.... |+...+..++..
T Consensus 475 ~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~a~~~la~a 551 (987)
T PRK09782 475 YDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--MSNEDLLAAANT 551 (987)
T ss_pred CCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCcHHHHHHHHH
Confidence 56677777767666 7888888888887777777766655444 47888888888888875542 334456667777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHH
Q 003315 596 LLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREA 675 (831)
Q Consensus 596 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 675 (831)
+...|+.++|...++++.+.+ +.+...+..+...+...|++++|...++++++. .|+...|..+..++.+.|++++|
T Consensus 552 ll~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 552 AQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 888888888888888888764 223333333444445568888888888888876 45677888888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHH-HHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003315 676 RDVFNDMKQRGITPDVVT-YTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNT 754 (831)
Q Consensus 676 ~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 754 (831)
+..+++.++. .|+... +..+-..+.. .++.++|+..+++..+.. +-+...+..+..++...
T Consensus 629 ~~~l~~AL~l--~Pd~~~a~~nLG~aL~~---------------~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~l 690 (987)
T PRK09782 629 VSDLRAALEL--EPNNSNYQAALGYALWD---------------SGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRL 690 (987)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHH---------------CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 8888888874 565444 3333334433 567888888888887643 23445778888888888
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003315 755 QNLEDGITVFNEISDRGLEPD-TVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDY 812 (831)
Q Consensus 755 g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~ 812 (831)
|++++|+..++++.+ ..|+ ..+.........+..+++.|.+.++.... +.|+.+
T Consensus 691 Gd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~--~~~~~~ 745 (987)
T PRK09782 691 DDMAATQHYARLVID--DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT--FSFDSS 745 (987)
T ss_pred CCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cCccch
Confidence 888888888888886 4565 35566667777777778888887777666 666666
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-24 Score=244.80 Aligned_cols=617 Identities=11% Similarity=-0.000 Sum_probs=438.8
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 003315 122 AIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGF 201 (831)
Q Consensus 122 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 201 (831)
..+..+...|++++|...|+++++.+|. ++.++..+++.|...|++++|+..++++.+.++
T Consensus 49 ~~a~~~~~~Gd~~~A~~~l~~Al~~dP~-------------------n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP 109 (987)
T PRK09782 49 DKALKAQKNNDEATAIREFEYIHQQVPD-------------------NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP 109 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC-------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 3444555668999999999999998765 456778999999999999999999999999875
Q ss_pred CcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH--------HHhcCChHHHHHHHHHHHhCCCCC
Q 003315 202 VWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA--------LCKKGSMQEAVEVFLEMEKAGVTP 273 (831)
Q Consensus 202 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~m~~~~~~p 273 (831)
.|...+..+... +++++|..+|+++.+.. |.+...+..+... |.+. ++|.+.++ .......|
T Consensus 110 -~n~~~~~~La~i----~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~ 179 (987)
T PRK09782 110 -GDARLERSLAAI----PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASP 179 (987)
T ss_pred -ccHHHHHHHHHh----ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCC
Confidence 366655554322 99999999999999864 4456666666655 5555 55555555 33333344
Q ss_pred CHHHHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCHhHHHHHHHHHHHCCCCCCHHHHHHH
Q 003315 274 NAFAYSTC-IEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCD-QNKLEKAECVLLHMEKQGVVPDVYAYSAL 351 (831)
Q Consensus 274 ~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 351 (831)
+..+.... ...|.+.|++++|+.++.++.+.+ +.+......|...|.. .++ +++..+++.. +..+...+..+
T Consensus 180 ~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~al 253 (987)
T PRK09782 180 EGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITY 253 (987)
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHH
Confidence 55555555 899999999999999999999997 6677778888888888 477 8888886642 23488899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHhcCChH-HHHHHHHHHHHCCCCcC-HhhHHHHHHHHHhc
Q 003315 352 ISGYCKFGKINKALLLHHEMTSKGIK-TNCGVLSVILKGLCQKGMAS-ATIKQFLEFKDMGFFLN-KVCYDVIVDSLCKL 428 (831)
Q Consensus 352 i~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 428 (831)
+..|.+.|+.++|..+++++...... |...++...+ .+.+... .+..-+..- ..++ ....-.++..+.+.
T Consensus 254 a~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l---~r~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 326 (987)
T PRK09782 254 ATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLL---SKYSANPVQALANYTVQ----FADNRQYVVGATLPVLLKE 326 (987)
T ss_pred HHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHH---HhccCchhhhccchhhh----hHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998654333 4444444433 3333322 111111110 0001 11122347888899
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 003315 429 GEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLL 508 (831)
Q Consensus 429 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 508 (831)
++++.+.++.. ..|.....-.-..+....+...++.+.++.|....+. +......+.-...+.|+.++|..++
T Consensus 327 ~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~ 399 (987)
T PRK09782 327 GQYDAAQKLLA------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLL 399 (987)
T ss_pred cHHHHHHHHhc------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHH
Confidence 99997776522 2222222211122233447778888888888775332 5555555666678899999999999
Q ss_pred HHHHHC-C-CCCCHHHHHHHHHHHHcCCC---HHHHH-------------------------HHHHHhhhCCCC--C---
Q 003315 509 NYMKRH-G-LEPNFVTHNMIIEGLCMGGR---VEEAE-------------------------AFLDGLKGKCLE--N--- 553 (831)
Q Consensus 509 ~~~~~~-~-~~~~~~~~~~l~~~~~~~g~---~~~a~-------------------------~~~~~~~~~~~~--~--- 553 (831)
+..... + -..+......++..|.+.+. ..++. ..+..+....|. .
T Consensus 400 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a 479 (987)
T PRK09782 400 LQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAA 479 (987)
T ss_pred HHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHH
Confidence 998762 1 22344556677777777655 22222 222333333344 2
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003315 554 YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQ 633 (831)
Q Consensus 554 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 633 (831)
|..++.++.. ++.++|+..+.+.....+ +......++..+...|++++|...++++... +|+...+..++.++.+
T Consensus 480 ~~~LG~~l~~-~~~~eAi~a~~~Al~~~P--d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~ 554 (987)
T PRK09782 480 WNRLAKCYRD-TLPGVALYAWLQAEQRQP--DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQA 554 (987)
T ss_pred HHHHHHHHHh-CCcHHHHHHHHHHHHhCC--chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHH
Confidence 6777777776 899999998888887753 4333444455557899999999999998664 4555556677888999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCC
Q 003315 634 AEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSP 713 (831)
Q Consensus 634 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~ 713 (831)
.|+.++|...++++++.++. +...+..+.....+.|++++|+..+++.++ +.|+...+..+-..+.+
T Consensus 555 ~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~---------- 621 (987)
T PRK09782 555 AGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQ---------- 621 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHH----------
Confidence 99999999999999986422 333333444455566999999999999997 46776667666666655
Q ss_pred chhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003315 714 DALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLD 793 (831)
Q Consensus 714 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~ 793 (831)
.+++++|...+++..+.. +-+...++.+..++...|++++|++.++++.+. .+-++..+..+..++...|+++
T Consensus 622 -----lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 622 -----RHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred -----CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHH
Confidence 678999999999998753 334458899999999999999999999999984 2335888999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHH
Q 003315 794 RAIALVDEMSVKGIQGDDYTK 814 (831)
Q Consensus 794 ~A~~~~~~~~~~g~~pd~~~~ 814 (831)
+|+..+++..+ +.|+..-.
T Consensus 695 eA~~~l~~Al~--l~P~~a~i 713 (987)
T PRK09782 695 ATQHYARLVID--DIDNQALI 713 (987)
T ss_pred HHHHHHHHHHh--cCCCCchh
Confidence 99999999998 77877443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-21 Score=199.33 Aligned_cols=559 Identities=11% Similarity=0.019 Sum_probs=369.1
Q ss_pred ChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHH--HcCChhHHHHHHHHHHHcCCCcChhhHH
Q 003315 132 WQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYV--SVGMFDEGIDILFQINRRGFVWSICSCN 209 (831)
Q Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 209 (831)
+.+.|...|..+++..|+ + +...+++++. ..|+|..|+.+|..++...+..-+...-
T Consensus 145 ~~~~A~a~F~~Vl~~sp~-------------------N--il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI 203 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQSPD-------------------N--ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI 203 (1018)
T ss_pred cHHHHHHHHHHHHhhCCc-------------------c--hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc
Confidence 357777778777777443 1 2335666664 5778999999999987765443333444
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc---CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003315 210 YFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKK---GSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLC 286 (831)
Q Consensus 210 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 286 (831)
.+...+.+.++.+.|+..|++.++.+ |.++.++..|...-... ..+..++..+...-..+ ..+++..+.|..-|.
T Consensus 204 gig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fy 281 (1018)
T KOG2002|consen 204 GIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFY 281 (1018)
T ss_pred hhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHh
Confidence 56677889999999999999988864 23334444443333333 33566777776665543 457778888888899
Q ss_pred hcCChhHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003315 287 MNGMLDLGYELLLKWEEADI--PLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKA 364 (831)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A 364 (831)
-.|+++.+..+...+..... +.-...|..+.++|-..|++++|...|.+..+....--+..+..+.++|.+.|+++.+
T Consensus 282 fK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s 361 (1018)
T KOG2002|consen 282 FKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEES 361 (1018)
T ss_pred hcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHH
Confidence 99999999999888877631 1224568889999999999999999998888763221133445578889999999999
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003315 365 LLLHHEMTSKGIKTNCGVLSVILKGLCQKG----MASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKE 440 (831)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 440 (831)
...|+.+.+.. +.+..+...+...|...+ ..+.|..++....+.- +.|...|-.+...+...+-+.. +..|..
T Consensus 362 ~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~ 438 (1018)
T KOG2002|consen 362 KFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGN 438 (1018)
T ss_pred HHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHH
Confidence 99999988763 335566767777776664 4455566665555543 3466677777777655544333 666654
Q ss_pred HH----hCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHc---CCCCCcc------hHHHHHHHHHhcCCHHHHHHH
Q 003315 441 MK----DRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEM---GHKPDII------TYNVLAGAFAQYGAVQKAFDL 507 (831)
Q Consensus 441 ~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~------~~~~l~~~~~~~g~~~~a~~~ 507 (831)
.. ..+..+.+...|.+...+...|+++.|...|...... ...+|.. +-..+...+-..++++.|.+.
T Consensus 439 A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~ 518 (1018)
T KOG2002|consen 439 ALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEM 518 (1018)
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHH
Confidence 43 3344466778888888888888998888888887654 1222331 122245555667788888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC---CCCChHHHHHHHHhcCCHHHHHHHHHHHHhCC-CC
Q 003315 508 LNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGK---CLENYSAMINGYCKTGHTKEAFQLFMRLSNQG-VL 583 (831)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 583 (831)
+..+++.. +.-...|..++.+....+...+|..+++.+... +|+.+..++..+.+...+..|.+-|..+.+.- ..
T Consensus 519 Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 519 YKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK 597 (1018)
T ss_pred HHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC
Confidence 88888763 333445555553444557778888888877655 34447777777887777777777666655442 22
Q ss_pred CCcccHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003315 584 VKKSSCNKLITNLLI------------LRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKG 651 (831)
Q Consensus 584 ~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 651 (831)
+|+.+...|+..+.. .+..++|+++|.++++.. +-+...-+.++-+++..|++.+|..+|.++.+..
T Consensus 598 ~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~ 676 (1018)
T KOG2002|consen 598 TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT 676 (1018)
T ss_pred CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH
Confidence 466666667665543 234566777777777654 4566666777777788888888888888877753
Q ss_pred CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHH
Q 003315 652 LTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGI-TPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWN 730 (831)
Q Consensus 652 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 730 (831)
.. +..+|-.+.++|..+|++..|+++|+...+.-. ..+......|-.++.. .+.+.+|.+...
T Consensus 677 ~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~---------------~~~~~eak~~ll 740 (1018)
T KOG2002|consen 677 SD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE---------------AGKLQEAKEALL 740 (1018)
T ss_pred hh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH---------------hhhHHHHHHHHH
Confidence 32 556777778888888888888888877665422 2233444444455443 344566665555
Q ss_pred HHHH
Q 003315 731 EMKE 734 (831)
Q Consensus 731 ~m~~ 734 (831)
....
T Consensus 741 ~a~~ 744 (1018)
T KOG2002|consen 741 KARH 744 (1018)
T ss_pred HHHH
Confidence 5443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-20 Score=194.99 Aligned_cols=572 Identities=12% Similarity=0.056 Sum_probs=431.3
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHH
Q 003315 98 PKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMI 177 (831)
Q Consensus 98 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 177 (831)
.+.|...|..+.+.. ++|.....--++++...+++..|+..|..++...|....+ .....+
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD------------------~rIgig 206 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKAD------------------VRIGIG 206 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC------------------ccchhh
Confidence 589999999998653 3466666666778888999999999999988876643322 223556
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcC---ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003315 178 KAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECG---KVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG 254 (831)
Q Consensus 178 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (831)
.++.+.|+.+.|+..|.++++.++ .++.++-.|...-.... .+..+...+...-... +.|+...+.|.+.|.-.|
T Consensus 207 ~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~ 284 (1018)
T KOG2002|consen 207 HCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKK 284 (1018)
T ss_pred hHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcc
Confidence 777899999999999999999986 36666655554443333 4566777777766543 568889999999999999
Q ss_pred ChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHH
Q 003315 255 SMQEAVEVFLEMEKAGVT--PNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECV 332 (831)
Q Consensus 255 ~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 332 (831)
+++.+..+..-+...... .-...|-.+.++|...|++++|..+|.+..+.+-......+..+...+.+.|+++.+...
T Consensus 285 dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~ 364 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFC 364 (1018)
T ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHH
Confidence 999999999998875311 123457889999999999999999999998875222255677889999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH--
Q 003315 333 LLHMEKQGVVPDVYAYSALISGYCKFG----KINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEF-- 406 (831)
Q Consensus 333 ~~~~~~~~~~p~~~~~~~li~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-- 406 (831)
|+.+.+..+. +..+...|...|...+ ..+.|..++.+..+.. ..|...|..+...+.....+.. +..|..+
T Consensus 365 fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d 441 (1018)
T KOG2002|consen 365 FEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALD 441 (1018)
T ss_pred HHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHH
Confidence 9999987443 6677888888887765 5677888888777654 3356666666666655544444 7666654
Q ss_pred --HHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCChh------hHHHHHHHHHccCChhhHHHHHHH
Q 003315 407 --KDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDR---QIVPDVV------NYTTMICGYCLQGKLGDALDLFKE 475 (831)
Q Consensus 407 --~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~ 475 (831)
...+..+.+...|.+...+...|++++|...|...... ...++.. +--.+...+-..++.+.|.+.+..
T Consensus 442 ~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~ 521 (1018)
T KOG2002|consen 442 ILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKS 521 (1018)
T ss_pred HHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 45566688999999999999999999999999988764 2223331 222344555667899999999999
Q ss_pred HHHcCCCCCc-chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCC---C
Q 003315 476 MKEMGHKPDI-ITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKC---L 551 (831)
Q Consensus 476 ~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~ 551 (831)
+.... |.. ..|..++......++..+|...+..+.... ..++.....+...+.+..++..|.+-|+.+.... +
T Consensus 522 Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~ 598 (1018)
T KOG2002|consen 522 ILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKT 598 (1018)
T ss_pred HHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCC
Confidence 98864 443 345555434445578889999999988753 5566667777778888888888888666665442 3
Q ss_pred CChHH--HHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003315 552 ENYSA--MINGYCK------------TGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNA 617 (831)
Q Consensus 552 ~~~~~--l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 617 (831)
++|.. |+..|.+ .+..++|+++|.+++...+. |...-+.++-+++..|++.+|..+|..+.+...
T Consensus 599 D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 599 DAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred chhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 44544 4554432 34578999999999998877 888889999999999999999999999988653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003315 618 EPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDK-GLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTV 696 (831)
Q Consensus 618 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 696 (831)
-...+|..+.++|..+|++..|.+.|+.+.+. ...-+......|..++.+.|.+.+|.+.+.......+....+.||.
T Consensus 678 -~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 678 -DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred -hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence 34557888999999999999999999998864 4445788899999999999999999999998887544444555555
Q ss_pred HH
Q 003315 697 LF 698 (831)
Q Consensus 697 ll 698 (831)
.+
T Consensus 757 a~ 758 (1018)
T KOG2002|consen 757 AL 758 (1018)
T ss_pred HH
Confidence 44
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-21 Score=194.95 Aligned_cols=445 Identities=16% Similarity=0.131 Sum_probs=322.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003315 173 SDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK 252 (831)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (831)
...|+.-..+.|++.+|.+.-..+-+.++. +......+-..+....+.++..+.-....+.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 446777778889999999887766555533 44445555566777777777655544444432 3456788889999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHH
Q 003315 253 KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECV 332 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 332 (831)
.|++++|+..++.|++.. +.....|..+..++...|+.+.|...|.+.++.+ |........+...+-..|++++|...
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhcchhHHHHhhcccchhHHH
Confidence 999999999999998863 3356788888899999999999999988888875 43444555666667778888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003315 333 LLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFF 412 (831)
Q Consensus 333 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 412 (831)
+.+.++..+. =...|+.|...+-.+|+...|+..|++.++.+ |+
T Consensus 207 YlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~--------------------------------- 250 (966)
T KOG4626|consen 207 YLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PN--------------------------------- 250 (966)
T ss_pred HHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC--Cc---------------------------------
Confidence 8888775321 24567778888888888888888888877643 22
Q ss_pred cCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHH
Q 003315 413 LNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLA 492 (831)
Q Consensus 413 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 492 (831)
=...|-.|...|...+.++.|...|.+...... .....+..+...|..+|..|-|+..+++.++..+. =...|+.+.
T Consensus 251 -f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~Nla 327 (966)
T KOG4626|consen 251 -FLDAYINLGNVYKEARIFDRAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLA 327 (966)
T ss_pred -chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHH
Confidence 123445566677777777777777777665422 24556666777777888888888888888775432 346788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcCCHHH
Q 003315 493 GAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTGHTKE 569 (831)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~ 569 (831)
.++-..|+..+|.+.+.+.+... +......+.+...|...|.+++|..+|....+..|+- .+.|...|.++|++++
T Consensus 328 nALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~ 406 (966)
T KOG4626|consen 328 NALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDD 406 (966)
T ss_pred HHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHH
Confidence 88888888888888888887763 4456667777888888888888888888877776654 7778888888888888
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 570 AFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPS-KSMYDKLIGALCQAEEMEQAQLVFNVLV 648 (831)
Q Consensus 570 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 648 (831)
|+..++++....+. -...+..++..|-..|+.+.|++.+.+++..+ |. ....+.|...|-..|++.+|.+-+++++
T Consensus 407 Ai~~YkealrI~P~-fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 407 AIMCYKEALRIKPT-FADALSNMGNTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHHHHHHHhcCch-HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 88888888776543 35667788888888888888888888888754 43 4567788888888999999999999888
Q ss_pred HCCCCCC-HhHHHHHHHHH
Q 003315 649 DKGLTPH-LVTYTMMIHGY 666 (831)
Q Consensus 649 ~~~~~p~-~~~~~~l~~~~ 666 (831)
+. +|| +..|..++.++
T Consensus 484 kl--kPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 484 KL--KPDFPDAYCNLLHCL 500 (966)
T ss_pred cc--CCCCchhhhHHHHHH
Confidence 85 444 34555454443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-21 Score=195.08 Aligned_cols=435 Identities=14% Similarity=0.082 Sum_probs=346.7
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHH
Q 003315 94 LRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLS 173 (831)
Q Consensus 94 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (831)
+.|++..|+.....+-+.+.. +.+..-.+..++....+.+...+--...++. .+.-.++|
T Consensus 60 q~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-------------------~~q~ae~y 119 (966)
T KOG4626|consen 60 QGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-------------------NPQGAEAY 119 (966)
T ss_pred hccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhc-------------------cchHHHHH
Confidence 568999999988887665433 2233333444454444444333222222222 23456789
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhh-HHHHHHHHHh
Q 003315 174 DAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYT-YVIVIKALCK 252 (831)
Q Consensus 174 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 252 (831)
..++..+-..|++++|+..|+.+++..+. .+.+|..+..++...|+.+.|.+.|.+.++.+ |+... ..-+...+-.
T Consensus 120 sn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka 196 (966)
T KOG4626|consen 120 SNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKA 196 (966)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHh
Confidence 99999999999999999999999998755 88899999999999999999999999988853 55443 3444555666
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHH
Q 003315 253 KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECV 332 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 332 (831)
.|+.++|...|.++++.. +--.+.|+.|...+-.+|+...|+..|++..+.+ |.-...|..|...|-..+.+++|...
T Consensus 197 ~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred hcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHH
Confidence 899999999999998762 2335689999999999999999999999999986 55678999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003315 333 LLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFF 412 (831)
Q Consensus 333 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 412 (831)
+.+.....+. ....+..+...|..+|.+|-|+..|++.++..+. =...|+.+..++-..|++.+|.+.|.+.+.....
T Consensus 275 Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ 352 (966)
T KOG4626|consen 275 YLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN 352 (966)
T ss_pred HHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc
Confidence 9999876433 5667888889999999999999999999886432 2467899999999999999999999999887543
Q ss_pred cCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCC-cchHHHH
Q 003315 413 LNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPD-IITYNVL 491 (831)
Q Consensus 413 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l 491 (831)
.....+.|..++...|.+++|.++|....+-... -...++.|...|-++|++++|+..+++.+.. +|+ ...|+.+
T Consensus 353 -hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~Nm 428 (966)
T KOG4626|consen 353 -HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNM 428 (966)
T ss_pred -cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhc
Confidence 4567788999999999999999999988764221 3456788999999999999999999998875 454 4678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHH
Q 003315 492 AGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMING 560 (831)
Q Consensus 492 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~ 560 (831)
...|-..|+.+.|.+.+.+++..+ +.-...++.+...|-..|++.+|+.-+++..+..|+. |..++.+
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHC 499 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHH
Confidence 889999999999999999998764 3346678889999999999999999999998887765 4444443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-18 Score=195.18 Aligned_cols=254 Identities=15% Similarity=0.050 Sum_probs=184.8
Q ss_pred cCCHHHHHHHHHHHHhCC-C-CCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 003315 428 LGEVEKAMILFKEMKDRQ-I-VPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAF 505 (831)
Q Consensus 428 ~g~~~~A~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 505 (831)
.+++++|.+.|+...+.+ . +.....+..+...+...|++++|+..+++..+..+. ....|..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHH
Confidence 356778888888777643 1 223445666667777788888888888887775432 3456677777777888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003315 506 DLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQGV 582 (831)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (831)
..++.+++.. +.+..++..+...+...|++++|...|++....+|.. +..++..+.+.|++++|+..|++..+..+
T Consensus 386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P 464 (615)
T TIGR00990 386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464 (615)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 8888887764 4556777777778888888888888888888777765 55667777888888888888888877654
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003315 583 LVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKS------MYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHL 656 (831)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 656 (831)
. ++..+..++..+...|++++|+..+++++......+.. .++..+..+...|++++|..+++++++.++. +.
T Consensus 465 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~ 542 (615)
T TIGR00990 465 E-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CD 542 (615)
T ss_pred C-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cH
Confidence 3 56777788888888888888888888888764321111 1122222334468999999999998886433 45
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003315 657 VTYTMMIHGYCKINCLREARDVFNDMKQR 685 (831)
Q Consensus 657 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 685 (831)
..+..++..+.+.|++++|+..|++..+.
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 67888999999999999999999998764
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.2e-17 Score=169.05 Aligned_cols=647 Identities=11% Similarity=0.096 Sum_probs=375.0
Q ss_pred HHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCc
Q 003315 124 VRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVW 203 (831)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 203 (831)
+..+...|+.++|..++.+++++.|. .+.+|..|+..|-..|+.+++...+-.+...++.
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~-------------------~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~- 205 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPR-------------------NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK- 205 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCcc-------------------chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-
Confidence 33344456666777777766666443 4456666777777777777766666666655544
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHH
Q 003315 204 SICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAF----AYS 279 (831)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~ 279 (831)
|..-|-.+.....+.|.++.|.-.|.+.++.. |++......-+..|-+.|+...|.+-|.++.....+.|.. ..-
T Consensus 206 d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~ 284 (895)
T KOG2076|consen 206 DYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIR 284 (895)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHH
Confidence 44566666666666666777777776666653 3444444444555666677777777766666552111111 222
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC------------------
Q 003315 280 TCIEGLCMNGMLDLGYELLLKWEEA-DIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQG------------------ 340 (831)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------ 340 (831)
.+++.+...++-+.|.+.++..... +-..+...++.++..|.+...++.|......+....
T Consensus 285 ~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 285 RVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 2344455555556666666666552 123344556666666666666666666665554411
Q ss_pred ---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003315 341 ---------VVPDVYAYSALISGYCKFGKINKALLLHHEMTSKG--IKTNCGVLSVILKGLCQKGMASATIKQFLEFKDM 409 (831)
Q Consensus 341 ---------~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 409 (831)
..++.... .+.-++......+....+.....+.+ +.-+...+.-+..++...|++.+|+..+..+...
T Consensus 365 ~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~ 443 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR 443 (895)
T ss_pred cccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 11222220 12222333344444444444444444 3334556777778888888888888888888777
Q ss_pred CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHH--------cCC
Q 003315 410 GFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKE--------MGH 481 (831)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~ 481 (831)
....+...|-.+..+|...|.+++|.+.|+.+..... .+......|...+-+.|+.++|.+.+..+.. .+.
T Consensus 444 ~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 444 EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 6666777888888888888888888888888776522 2444555666677788888888888877542 123
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------------------CCCCHHHHHHHHHHHHcCCCHHHH
Q 003315 482 KPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHG----------------------LEPNFVTHNMIIEGLCMGGRVEEA 539 (831)
Q Consensus 482 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~a 539 (831)
.|+..........+.+.|+.++=..+...|+... .+........++.+-.+.++....
T Consensus 523 ~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 602 (895)
T KOG2076|consen 523 EPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVM 602 (895)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHh
Confidence 3444444555666777777766554444443210 111222333334444444443322
Q ss_pred HHHHHHh--------hhCCCCC----hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-Ccc----cHHHHHHHHHhcCCH
Q 003315 540 EAFLDGL--------KGKCLEN----YSAMINGYCKTGHTKEAFQLFMRLSNQGVLV-KKS----SCNKLITNLLILRDN 602 (831)
Q Consensus 540 ~~~~~~~--------~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~----~~~~l~~~~~~~~~~ 602 (831)
++-+..- .....+. +..++..+++.+++++|+.+...+....... +.. .-...+.+.+..+++
T Consensus 603 ~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~ 682 (895)
T KOG2076|consen 603 EKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDP 682 (895)
T ss_pred hhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCH
Confidence 2221111 1111112 3446788899999999999998887764322 222 123445566788999
Q ss_pred HHHHHHHHHHHhC-CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 003315 603 NNALKLFKTMITL-NA--EPS-KSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDV 678 (831)
Q Consensus 603 ~~a~~~~~~~~~~-~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 678 (831)
..|...++.++.. +. .|. ...|+...+...+.|+-.-=.+.+..+......-++..+..........+.+..|+..
T Consensus 683 ~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~ 762 (895)
T KOG2076|consen 683 GDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQE 762 (895)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHH
Confidence 9999999999864 11 121 2345545555555554444444444444332222233444445556678889999998
Q ss_pred HHHHHHCCCCCCHHHHHHHHH-HhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 003315 679 FNDMKQRGITPDVVTYTVLFD-AHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRP-DVISYTVLIAKLCNTQN 756 (831)
Q Consensus 679 ~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~ 756 (831)
+-+... ..||....+..+. ++....+.. ....++..+..+..++.+..+....- -...+-.++++|-..|-
T Consensus 763 y~ra~~--~~pd~Pl~nl~lglafih~a~qr-----~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl 835 (895)
T KOG2076|consen 763 YMRAFR--QNPDSPLINLCLGLAFIHLALQR-----RVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGL 835 (895)
T ss_pred HHHHHH--hCCCCcHHHHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHccc
Confidence 877765 3566444444332 111111000 00113344566777777766543332 23466668999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCH-------------HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003315 757 LEDGITVFNEISDRGLEPDT-------------VTYTALLCGYLAKGDLDRAIALVDEM 802 (831)
Q Consensus 757 ~~~A~~~~~~~~~~g~~pd~-------------~~~~~l~~~~~~~g~~~~A~~~~~~~ 802 (831)
+.-|..++++.++. .|-. ..-..|.-.|...|+...|.+++++-
T Consensus 836 ~~LA~~YYekvL~~--~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 836 VHLAVSYYEKVLEV--SPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred HHHHHHHHHHHhCC--CccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhh
Confidence 99999999999963 3211 12223444699999999999998764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-18 Score=192.49 Aligned_cols=429 Identities=11% Similarity=-0.020 Sum_probs=246.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC 251 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (831)
.+...+..+.+.|++++|+..|+++++.. |+...+..+..+|.+.|++++|+..++..++.. +.+...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 45577888888999999999999888764 456677888888888999999999998888764 445668888888888
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHH
Q 003315 252 KKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAEC 331 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 331 (831)
..|++++|+..|..+...+-. +......++..+.. ..+........+.. +.+...+..+...+ .....+.+..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchh
Confidence 999999998888766554211 11111111111111 12222233333332 22222333222222 1111111111
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHH---HhcCChHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 003315 332 VLLHMEKQGVVPDV-YAYSALISGY---CKFGKINKALLLHHEMTSKG-IKTNCGVLSVILKGLCQKGMASATIKQFLEF 406 (831)
Q Consensus 332 ~~~~~~~~~~~p~~-~~~~~li~~~---~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 406 (831)
-++...+. .++. ..+..+...+ ...+++++|.+.|+..++.+ ..|+
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~--------------------------- 329 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEK--------------------------- 329 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChh---------------------------
Confidence 11111111 1110 0111111110 12345666666666665543 1111
Q ss_pred HHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcc
Q 003315 407 KDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDII 486 (831)
Q Consensus 407 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 486 (831)
....++.+...+...|++++|+..+++..+... .+...|..+...+...|++++|...|+++.+..+. +..
T Consensus 330 -------~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~ 400 (615)
T TIGR00990 330 -------EAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPD 400 (615)
T ss_pred -------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH
Confidence 233455555556666666666666666655421 12345555556666666666666666666555332 445
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHh
Q 003315 487 TYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCK 563 (831)
Q Consensus 487 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~ 563 (831)
.+..+...+...|++++|...+++.++.. +.+...+..+..++.+.|++++|+..|++.....|.. ++.++..+..
T Consensus 401 ~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~ 479 (615)
T TIGR00990 401 IYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLD 479 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 56666666666666666666666666653 3345555556666666677777777666666554443 5666666677
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcccH------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 003315 564 TGHTKEAFQLFMRLSNQGVLVKKSSC------NKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEM 637 (831)
Q Consensus 564 ~g~~~~A~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 637 (831)
.|++++|++.|++..+..+..+.... ...+..+...|++++|..+++++...+ +.+...+..++.++...|++
T Consensus 480 ~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 480 QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred ccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCH
Confidence 77777777777776665443221111 111122233578888888888887764 33445677888888999999
Q ss_pred HHHHHHHHHHHHC
Q 003315 638 EQAQLVFNVLVDK 650 (831)
Q Consensus 638 ~~A~~~~~~~~~~ 650 (831)
++|...|+++.+.
T Consensus 559 ~eAi~~~e~A~~l 571 (615)
T TIGR00990 559 DEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888775
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-19 Score=192.44 Aligned_cols=300 Identities=14% Similarity=0.058 Sum_probs=196.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC---hhhHHHHHHHHH
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLN---EYTYVIVIKALC 251 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 251 (831)
..+..+...|++++|+..|.++++.++. +..++..++..+...|++++|..+++.+.+.+..++ ...+..++..|.
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 4455667889999999999999888643 677788888889999999999999998886432111 245778888888
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHh
Q 003315 252 KKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLS----AFAYTVVIRWFCDQNKLE 327 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~ 327 (831)
+.|++++|+.+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..++..+.+.|+++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 8999999999999988753 45677888888888889999999988888887642221 124556777778888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 328 KAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFK 407 (831)
Q Consensus 328 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 407 (831)
+|.+.|+++.+..+. +...+..++..+.+.|++++|.+.++++.+.+......++..++.++...|+.++|...++.+.
T Consensus 198 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888888876432 4566777788888888888888888888765332222334444455555555555555555444
Q ss_pred HCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc---cCChhhHHHHHHHHHHcCC
Q 003315 408 DMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCL---QGKLGDALDLFKEMKEMGH 481 (831)
Q Consensus 408 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~ 481 (831)
+.. |+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++++.+++++.+.++
T Consensus 277 ~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 277 EEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 432 22233344444455555555555555444432 2344444444443332 2344445555554444333
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-18 Score=197.36 Aligned_cols=410 Identities=10% Similarity=0.001 Sum_probs=209.8
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
++....-.+.++...|+.++|++++.......+ ....++..++.++.+.|++++|+..|++
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~-------------------~~a~~~~~lA~~~~~~g~~~~A~~~~~~ 74 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQ-------------------LPARGYAAVAVAYRNLKQWQNSLTLWQK 74 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333444445555555555555555544433211 1233445555555555555555555555
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNA 275 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 275 (831)
+++..+. +......++.++...|++++|+..++++++.. +.+.. +..+..++...|+.++|+..++++.+.. +.+.
T Consensus 75 al~~~P~-~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~ 150 (765)
T PRK10049 75 ALSLEPQ-NDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQ 150 (765)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 5554322 34444455555555555555555555555432 23334 5555555555555555555555555542 2233
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHH-----hcCCH---hHHHHHHHHHHHC-CC
Q 003315 276 FAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLS-----AFAYTVVIRWFC-----DQNKL---EKAECVLLHMEKQ-GV 341 (831)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~~-~~ 341 (831)
..+..+..++...+..++|+..++.+... |.. ......+++... ..+++ ++|.+.++.+.+. ..
T Consensus 151 ~~~~~la~~l~~~~~~e~Al~~l~~~~~~--p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~ 228 (765)
T PRK10049 151 QYPTEYVQALRNNRLSAPALGAIDDANLT--PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHD 228 (765)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhccc
Confidence 33344445555555555555555443321 000 001111122111 11223 5566666666543 11
Q ss_pred CCCHH-HH----HHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc--
Q 003315 342 VPDVY-AY----SALISGYCKFGKINKALLLHHEMTSKGIK-TNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFL-- 413 (831)
Q Consensus 342 ~p~~~-~~----~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-- 413 (831)
.|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+. ....+...+...|++++|+..|+.+.+.....
T Consensus 229 ~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~ 307 (765)
T PRK10049 229 NPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIAD 307 (765)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCC
Confidence 22211 11 01122334556666676666666655432 221 12223445556666666666666655433211
Q ss_pred -CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC---hhhHHHHHHHHHccCChhhHHHHHHHHHH
Q 003315 414 -NKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQI-----------VPD---VVNYTTMICGYCLQGKLGDALDLFKEMKE 478 (831)
Q Consensus 414 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 478 (831)
.......+..++...|++++|..+++.+..... .|+ ...+..+...+...|+.++|+++++++..
T Consensus 308 ~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~ 387 (765)
T PRK10049 308 LSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY 387 (765)
T ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 123344455556677777777777777665421 112 12334455566677777777777777766
Q ss_pred cCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC
Q 003315 479 MGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN 553 (831)
Q Consensus 479 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 553 (831)
..+. +...+..+...+...|++++|++.++++++.. |.+...+...+..+.+.|++++|+.+++++.+..|++
T Consensus 388 ~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 388 NAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred hCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 5433 45566666667777777777777777777653 3344555555556667777777777777777666665
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-18 Score=191.35 Aligned_cols=352 Identities=10% Similarity=-0.015 Sum_probs=278.2
Q ss_pred HHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCc
Q 003315 88 VEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGST 167 (831)
Q Consensus 88 ~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (831)
+.+-..+.|+++.|+.++..+...... ++.....++..+...|++++|...+.+++...|.
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~------------------ 108 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC------------------ 108 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC------------------
Confidence 344446779999999999988755434 4566667777788899999999999999998665
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 003315 168 LLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVI 247 (831)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 247 (831)
++.++..++..+...|++++|+..|+++++..+. +..++..++.++...|++++|...++.+.... +.+...+..+
T Consensus 109 -~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~- 184 (656)
T PRK15174 109 -QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC- 184 (656)
T ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-
Confidence 5667889999999999999999999999998644 77788899999999999999999999887654 2334444333
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHh
Q 003315 248 KALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLE 327 (831)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 327 (831)
..+...|++++|+..++.+.+....++...+..+...+...|++++|...++++.+.+ |.+...+..+...+...|+++
T Consensus 185 ~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~ 263 (656)
T PRK15174 185 LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSR 263 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCch
Confidence 3478899999999999998876433445555666788899999999999999999875 667888999999999999998
Q ss_pred H----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 003315 328 K----AECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQF 403 (831)
Q Consensus 328 ~----A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 403 (831)
+ |...|++..+..+. +...+..+...+.+.|++++|+..+++....... +......+...+.+.|++++|+..+
T Consensus 264 eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l 341 (656)
T PRK15174 264 EAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEF 341 (656)
T ss_pred hhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6 89999999987544 6778999999999999999999999999986543 4556677788888999999999999
Q ss_pred HHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHc
Q 003315 404 LEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEM 479 (831)
Q Consensus 404 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 479 (831)
+.+....+. +...+..+..++...|+.++|...|++..+.. |+.. ...+++|...+.+..+.
T Consensus 342 ~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~~--P~~~-----------~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 342 VQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQAR--ASHL-----------PQSFEEGLLALDGQISA 403 (656)
T ss_pred HHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--hhhc-----------hhhHHHHHHHHHHHHHh
Confidence 888876433 22344445677888999999999999887652 2211 23445666666666554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.7e-18 Score=188.01 Aligned_cols=332 Identities=13% Similarity=0.057 Sum_probs=218.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003315 173 SDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK 252 (831)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (831)
...++..+.+.|++++|..+++.++...+. +..+...++.+....|++++|...|+++.+.. |.+...+..+...+.+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 346677788889999999999988887655 55666667777778899999999999988764 4566778888888889
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHH
Q 003315 253 KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECV 332 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 332 (831)
.|++++|++.++++.+.. +.+...+..++.++...|++++|...++.+.... |.+...+..++ .+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~~-~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATCL-SFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHHH-HHHHcCCHHHHHHH
Confidence 999999999999988753 3446677788888888899999988888877664 33444444433 47778888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHH----HHHHHHHHHH
Q 003315 333 LLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASA----TIKQFLEFKD 408 (831)
Q Consensus 333 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~ 408 (831)
++.+.+....++...+..+...+.+.|++++|+..+++....+.. +...+..+...+...|+.++ |...++....
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 888877644344455555667778888888888888888775432 34445555556666666553 4555555555
Q ss_pred CCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCc-ch
Q 003315 409 MGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDI-IT 487 (831)
Q Consensus 409 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~ 487 (831)
..+. +...+..+...+.+.|++++|+..+++....... +...+..+...+.+.|++++|...++++.+.+ |+. ..
T Consensus 279 l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~ 354 (656)
T PRK15174 279 FNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKW 354 (656)
T ss_pred hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHH
Confidence 4322 4455555555555666666666666555543221 33344445555555566666666655555442 222 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003315 488 YNVLAGAFAQYGAVQKAFDLLNYMKRH 514 (831)
Q Consensus 488 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 514 (831)
+..+..++...|+.++|...++.+.+.
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 222344455555555555555555543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-19 Score=190.24 Aligned_cols=303 Identities=16% Similarity=0.130 Sum_probs=177.4
Q ss_pred HHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCc
Q 003315 124 VRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVW 203 (831)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 203 (831)
+..+...|++++|...+.++++..|. +..++..++..+...|++++|+..++++...+..+
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~-------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 102 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPE-------------------TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLT 102 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcc-------------------cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCC
Confidence 33444556666666666665554332 33455566666666666666666666655532111
Q ss_pred C---hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----H
Q 003315 204 S---ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNA----F 276 (831)
Q Consensus 204 ~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~ 276 (831)
+ ...+..++..|.+.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|++.++++.+.+..+.. .
T Consensus 103 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 181 (389)
T PRK11788 103 REQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAH 181 (389)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 1 1344555666666666666666666665532 334556666666666666666666666666654322211 1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003315 277 AYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYC 356 (831)
Q Consensus 277 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 356 (831)
.+..++..+.+.|++++|...++++.+.. +.+...+..++..+.+.|++++|.+.|+++.+.++.....+++.++.+|.
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~ 260 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQ 260 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH
Confidence 23445555666666666666666666543 33455566666666666666666666666665432222345566666666
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHh---cCCHHH
Q 003315 357 KFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCK---LGEVEK 433 (831)
Q Consensus 357 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~ 433 (831)
+.|++++|...++++.+.. |+...+..+...+.+.|++++|...++++.+. .|+...++.++..+.. .|+.++
T Consensus 261 ~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~ 336 (389)
T PRK11788 261 ALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKE 336 (389)
T ss_pred HcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchh
Confidence 6677777766666666543 33344455666666667777777666666554 3566666666666654 457778
Q ss_pred HHHHHHHHHhCCCCCChh
Q 003315 434 AMILFKEMKDRQIVPDVV 451 (831)
Q Consensus 434 A~~~~~~~~~~~~~~~~~ 451 (831)
+..+++++..+++.|++.
T Consensus 337 a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 337 SLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 888888877766555554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-17 Score=182.32 Aligned_cols=445 Identities=10% Similarity=0.055 Sum_probs=279.8
Q ss_pred CChHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 003315 82 LNTREVVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEAL 161 (831)
Q Consensus 82 ~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (831)
+.....-.++..+.|+++.|+..|+++.+..+...+.++ .++.++...|+.++|...+.+.+. +.
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~--p~------------ 98 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS--SM------------ 98 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc--CC------------
Confidence 456667778889999999999999999876443223445 788888899999999999998772 21
Q ss_pred hcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChh
Q 003315 162 CGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEY 241 (831)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 241 (831)
+........++..|...|++++|+++|+++++..+. +...+..++..+...++.++|++.++++.+. .|+..
T Consensus 99 -----n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~ 170 (822)
T PRK14574 99 -----NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQ 170 (822)
T ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchH
Confidence 113345556688999999999999999999999866 6777888889999999999999999999875 36655
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhh------HHH
Q 003315 242 TYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFA------YTV 315 (831)
Q Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~ 315 (831)
.+..++..+...++..+|++.++++.+.. +.+...+..+..++.+.|-...|.++..+-... +.+.... ...
T Consensus 171 ~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~ 248 (822)
T PRK14574 171 NYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAE 248 (822)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHH
Confidence 66555444445677767999999999874 446777888889999999999998877653321 1111100 001
Q ss_pred HHHHHH-----hcCCH---hHHHHHHHHHHHC-CCCCCH-HHH----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh
Q 003315 316 VIRWFC-----DQNKL---EKAECVLLHMEKQ-GVVPDV-YAY----SALISGYCKFGKINKALLLHHEMTSKGIKTNCG 381 (831)
Q Consensus 316 l~~~~~-----~~g~~---~~A~~~~~~~~~~-~~~p~~-~~~----~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 381 (831)
+++.-. ...++ +.|+.-++.+... +..|.. ..| .-.+-++...|+..++++.|+.+...+.+....
T Consensus 249 ~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y 328 (822)
T PRK14574 249 QVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY 328 (822)
T ss_pred HHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH
Confidence 111100 11122 3334444444431 111221 111 112344556677777777777777666554555
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----------
Q 003315 382 VLSVILKGLCQKGMASATIKQFLEFKDMGF-----FLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQI---------- 446 (831)
Q Consensus 382 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------- 446 (831)
+...+..+|...+++++|..+|..+..... .++......|.-++...+++++|..+++.+.+...
T Consensus 329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~ 408 (822)
T PRK14574 329 ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPG 408 (822)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCC
Confidence 666666777777777777777766654321 12233345566666666666666666666665211
Q ss_pred -CCCh---hhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003315 447 -VPDV---VNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVT 522 (831)
Q Consensus 447 -~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 522 (831)
.|+. ..+..++..+...|+..+|++.++++....+. |......+...+...|.+.+|++.++.+... .+.+..+
T Consensus 409 ~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~ 486 (822)
T PRK14574 409 KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLIL 486 (822)
T ss_pred CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHH
Confidence 0111 11223344455666666666666666555433 5555666666666666666666666555444 2344455
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC
Q 003315 523 HNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN 553 (831)
Q Consensus 523 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 553 (831)
....+..+...+++++|.++.+.+....|+.
T Consensus 487 ~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 487 ERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 5555555666666666666666666555554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-17 Score=190.64 Aligned_cols=406 Identities=12% Similarity=-0.027 Sum_probs=284.0
Q ss_pred CcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHH
Q 003315 166 STLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVI 245 (831)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 245 (831)
.+.++......+.+....|+.++|+.++.++.... +.+...+..+..++.+.|++++|..+|++.++.. |.++..+..
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 88 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRG 88 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 34566677788889999999999999999988744 3456668899999999999999999999998764 456777888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 003315 246 VIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNK 325 (831)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 325 (831)
++..+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|...++++.+.. |.+...+..++..+...+.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 8899999999999999999998863 34555 8888899999999999999999999985 6677888888999999999
Q ss_pred HhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHhC-CCCCCHh-hHH----H
Q 003315 326 LEKAECVLLHMEKQGVVPDV------YAYSALISGYC-----KFGKI---NKALLLHHEMTSK-GIKTNCG-VLS----V 385 (831)
Q Consensus 326 ~~~A~~~~~~~~~~~~~p~~------~~~~~li~~~~-----~~~~~---~~A~~~~~~~~~~-~~~~~~~-~~~----~ 385 (831)
.++|.+.++.+.. .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+. .
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 9999999987664 2331 11222222222 12234 6788888888754 2222221 111 1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCC-cCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHH
Q 003315 386 ILKGLCQKGMASATIKQFLEFKDMGFF-LNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVP---DVVNYTTMICGYC 461 (831)
Q Consensus 386 ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~ 461 (831)
.+..+...++.++|+..|+.+.+.+.. |+. ....+...|...|++++|+..|+++....... .......+..++.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 133445667888888888887776532 222 22224667788888888888888876542111 1233455566677
Q ss_pred ccCChhhHHHHHHHHHHcCCC-----------CCc---chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003315 462 LQGKLGDALDLFKEMKEMGHK-----------PDI---ITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMII 527 (831)
Q Consensus 462 ~~g~~~~A~~~~~~~~~~~~~-----------~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 527 (831)
..|++++|.++++.+.+..+. |+. ..+..+...+...|+.++|+++++++.... +.+...+..+.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA 400 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYA 400 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 888888888888887765321 121 123445556667777777777777776653 45566666677
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003315 528 EGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQG 581 (831)
Q Consensus 528 ~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 581 (831)
..+...|+.++|++.++++...+|+. +..++..+.+.|++++|..+++++.+..
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 77777777777777777777766665 3344455666677777777777776654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-15 Score=156.98 Aligned_cols=606 Identities=14% Similarity=0.099 Sum_probs=390.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 003315 177 IKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSM 256 (831)
Q Consensus 177 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 256 (831)
+......|++++|..++..+++.++. +..+|..|..+|-..|+.+++...+-..... .|.|...|..+.....+.|.+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccH
Confidence 33344569999999999999999855 7888999999999999999999887665443 356778999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH----HHHHHHhcCCHhHHHHH
Q 003315 257 QEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTV----VIRWFCDQNKLEKAECV 332 (831)
Q Consensus 257 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~A~~~ 332 (831)
++|.-.|.++++.. +++...+-.-...|-+.|+...|...|.++.....+.+..-... .+..+...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999875 56777777778889999999999999999999864444333333 35556777888999999
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---------------------------CCHhhHH
Q 003315 333 LLHMEKQG-VVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIK---------------------------TNCGVLS 384 (831)
Q Consensus 333 ~~~~~~~~-~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~---------------------------~~~~~~~ 384 (831)
++.....+ -.-+...++.++..|.+..+++.|......+...... ++... .
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 98887621 1225566889999999999999999988887662111 11112 1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC--CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 003315 385 VILKGLCQKGMASATIKQFLEFKDMG--FFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCL 462 (831)
Q Consensus 385 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 462 (831)
.+.-++......+....+...+.... +.-++..|.-+.++|...|++.+|+++|..+......-+...|-.+..+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 22223334444444444444444444 4445778899999999999999999999999887555577889999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHcCC
Q 003315 463 QGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMK--------RHGLEPNFVTHNMIIEGLCMGG 534 (831)
Q Consensus 463 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g 534 (831)
.|..++|.+.++..+...+. +...-..|...+.+.|+.++|.+.+..+. ..+..|+..........+.+.|
T Consensus 462 l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 99999999999999886543 55666778888999999999999999854 2234555666666667788888
Q ss_pred CHHHHHHHHHHhhhCC-------CC-------------------ChHHHHHHHHhcCCHHHHHHHHHH------HHhCCC
Q 003315 535 RVEEAEAFLDGLKGKC-------LE-------------------NYSAMINGYCKTGHTKEAFQLFMR------LSNQGV 582 (831)
Q Consensus 535 ~~~~a~~~~~~~~~~~-------~~-------------------~~~~l~~~~~~~g~~~~A~~~~~~------~~~~~~ 582 (831)
+.++-...-..+.... |. ....++.+-.+.++.....+-... -...+.
T Consensus 541 k~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~L 620 (895)
T KOG2076|consen 541 KREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGL 620 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccC
Confidence 8877555444433210 00 011122222222221111111100 001111
Q ss_pred CCCc--ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC-
Q 003315 583 LVKK--SSCNKLITNLLILRDNNNALKLFKTMITLNAE--PSK---SMYDKLIGALCQAEEMEQAQLVFNVLVDK-GLT- 653 (831)
Q Consensus 583 ~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~- 653 (831)
..+. ..+..++.++++.++..+|..+...+.....- ++. ..-...+.+.+..+++..|...+..+... +..
T Consensus 621 siddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~ 700 (895)
T KOG2076|consen 621 SIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYL 700 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhh
Confidence 1111 12445566777778888888777777654322 111 12223445566777788877777777643 111
Q ss_pred -C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHH
Q 003315 654 -P-HLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNE 731 (831)
Q Consensus 654 -p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 731 (831)
| -...||...+.+.+.++-.--.+++..... ..|+......++.++.. ...+.+..|++.+-+
T Consensus 701 ~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~-------------~~~~s~~~Al~~y~r 765 (895)
T KOG2076|consen 701 DVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNL-------------FVNASFKHALQEYMR 765 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhH-------------hhccchHHHHHHHHH
Confidence 1 233455555555554443333333333322 12222112222222211 134557778887766
Q ss_pred HHHcCCCCCHHHHHHHH-HHHH----------hcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003315 732 MKEMGIRPDVISYTVLI-AKLC----------NTQNLEDGITVFNEISDRG-LEPDTVTYTALLCGYLAKGDLDRAIALV 799 (831)
Q Consensus 732 m~~~~~~p~~~~~~~l~-~~~~----------~~g~~~~A~~~~~~~~~~g-~~pd~~~~~~l~~~~~~~g~~~~A~~~~ 799 (831)
.... .||....+..+ -++. |+-.+-.++.++.+-.+.. ......+...++++|...|=..-|..++
T Consensus 766 a~~~--~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YY 843 (895)
T KOG2076|consen 766 AFRQ--NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYY 843 (895)
T ss_pred HHHh--CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 6543 45543333222 2221 1112334555555544421 1224567888999999999999999999
Q ss_pred HHHHh
Q 003315 800 DEMSV 804 (831)
Q Consensus 800 ~~~~~ 804 (831)
++.+.
T Consensus 844 ekvL~ 848 (895)
T KOG2076|consen 844 EKVLE 848 (895)
T ss_pred HHHhC
Confidence 99997
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.4e-14 Score=141.66 Aligned_cols=604 Identities=11% Similarity=-0.013 Sum_probs=455.1
Q ss_pred ChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHH
Q 003315 132 WQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYF 211 (831)
Q Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 211 (831)
+.+.|..++..+.+.+|. .|..|..-++.--..|++..|..+..+--+.- +.+...|...
T Consensus 266 DikKaR~llKSvretnP~-------------------hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~c-prSeDvWLea 325 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETNPK-------------------HPPGWIASARLEEVAGKLSVARNLIMKGCEEC-PRSEDVWLEA 325 (913)
T ss_pred HHHHHHHHHHHHHhcCCC-------------------CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhC-CchHHHHHHH
Confidence 455677777777666544 45577777777778888888888776655443 3355555433
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCC
Q 003315 212 MNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNA-FAYSTCIEGLCMNGM 290 (831)
Q Consensus 212 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~ 290 (831)
++....+.|..+....++.- |.++..|.--+. -..+...=.+++++.++. .|+. ..|.. -....+
T Consensus 326 ----iRLhp~d~aK~vvA~Avr~~-P~Sv~lW~kA~d---LE~~~~~K~RVlRKALe~--iP~sv~LWKa----AVelE~ 391 (913)
T KOG0495|consen 326 ----IRLHPPDVAKTVVANAVRFL-PTSVRLWLKAAD---LESDTKNKKRVLRKALEH--IPRSVRLWKA----AVELEE 391 (913)
T ss_pred ----HhcCChHHHHHHHHHHHHhC-CCChhhhhhHHh---hhhHHHHHHHHHHHHHHh--CCchHHHHHH----HHhccC
Confidence 35566777888888877652 334444433222 233455556788888876 3444 44443 344566
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003315 291 LDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHE 370 (831)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 370 (831)
.+.|.-++.+..+. +|.+...|.+| .+..-|+.|.++++...+. +..+...|.+-...=-.+|+.+....++.+
T Consensus 392 ~~darilL~rAvec-cp~s~dLwlAl----arLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~r 465 (913)
T KOG0495|consen 392 PEDARILLERAVEC-CPQSMDLWLAL----ARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDR 465 (913)
T ss_pred hHHHHHHHHHHHHh-ccchHHHHHHH----HHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 67799999998887 46666665544 4556789999999999886 445888888877777788999888888765
Q ss_pred H----HhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003315 371 M----TSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLN--KVCYDVIVDSLCKLGEVEKAMILFKEMKDR 444 (831)
Q Consensus 371 ~----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 444 (831)
- ...|+..+...|..=...|-..|..-.+..+.......|+... ..+|..-...|.+.+.++-|..+|....+.
T Consensus 466 gl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv 545 (913)
T KOG0495|consen 466 GLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV 545 (913)
T ss_pred HHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh
Confidence 4 4578888999998888899999999889899888888877543 468888889999999999999999988875
Q ss_pred CCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003315 445 QIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHN 524 (831)
Q Consensus 445 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 524 (831)
++.+...|...+..--..|..++-..+|+++...-++ ....|.....-+-..|+...|..++..+.+.. +.+...+.
T Consensus 546 -fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwl 622 (913)
T KOG0495|consen 546 -FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWL 622 (913)
T ss_pred -ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHH
Confidence 3346677877777667789999999999999887543 55666667777888999999999999999875 55778888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCC--hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCH
Q 003315 525 MIIEGLCMGGRVEEAEAFLDGLKGKCLEN--YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDN 602 (831)
Q Consensus 525 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 602 (831)
..+.......+++.|..+|.+.....+.. |.--+...--.++.++|++++++..+.-+. -...|..+++.+-..++.
T Consensus 623 aavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 623 AAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHH
Confidence 88999999999999999999988765544 555555555678999999999998887543 455678888889999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003315 603 NNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDM 682 (831)
Q Consensus 603 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 682 (831)
+.|...|..-.+. ++-....|..|...=-+.|.+-.|+.+++...-+++. +...|-..|+.-.+.|+.+.|..+..+.
T Consensus 702 e~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 702 EMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred HHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9998888766553 2344567777777778889999999999999988766 8889999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003315 683 KQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGIT 762 (831)
Q Consensus 683 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 762 (831)
++. ++.+...|.--|....+.+ .-...... |++ ..-|+...-.+...|....++++|.+
T Consensus 780 LQe-cp~sg~LWaEaI~le~~~~---------------rkTks~DA---Lkk--ce~dphVllaia~lfw~e~k~~kar~ 838 (913)
T KOG0495|consen 780 LQE-CPSSGLLWAEAIWLEPRPQ---------------RKTKSIDA---LKK--CEHDPHVLLAIAKLFWSEKKIEKARE 838 (913)
T ss_pred HHh-CCccchhHHHHHHhccCcc---------------cchHHHHH---HHh--ccCCchhHHHHHHHHHHHHHHHHHHH
Confidence 875 5556667776666554421 11111222 221 34567777778888889999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 763 VFNEISDRGLEPD-TVTYTALLCGYLAKGDLDRAIALVDEMSV 804 (831)
Q Consensus 763 ~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 804 (831)
.|.+.+.. .|| -.+|.-+...+.++|.-+.-.+++++...
T Consensus 839 Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 839 WFERAVKK--DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHcc--CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 99999974 454 56788888899999998888899988876
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-16 Score=174.16 Aligned_cols=439 Identities=13% Similarity=0.014 Sum_probs=280.4
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
.+.+...-+-+..+.|++..|.+.+.++++..|... +.++ .++..+...|+.++|+..+++
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~------------------~av~-dll~l~~~~G~~~~A~~~~ek 93 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQS------------------GQVD-DWLQIAGWAGRDQEVIDVYER 93 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccch------------------hhHH-HHHHHHHHcCCcHHHHHHHHH
Confidence 344444555678899999999999999988855421 1223 778888889999999999999
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNA 275 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 275 (831)
..... .........++..+...|++++|+++|+++.+.. |.++..+..++..+...++.++|++.++++... .|+.
T Consensus 94 a~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~ 169 (822)
T PRK14574 94 YQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTV 169 (822)
T ss_pred hccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--Ccch
Confidence 88322 2233334444668888999999999999999875 456777888888899999999999999999876 5776
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHH------H
Q 003315 276 FAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAY------S 349 (831)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~------~ 349 (831)
..+..++..+...++..+|++.++++.+.+ |.+...+..+...+.+.|-...|.++..+-... +.+....+ .
T Consensus 170 ~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a 247 (822)
T PRK14574 170 QNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAA 247 (822)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHH
Confidence 666556566656777767999999999986 778888899999999999988888776653321 11111111 0
Q ss_pred HHHHHH---H--hcCC---hHHHHHHHHHHHhC-CCCCCHh-----hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH
Q 003315 350 ALISGY---C--KFGK---INKALLLHHEMTSK-GIKTNCG-----VLSVILKGLCQKGMASATIKQFLEFKDMGFFLNK 415 (831)
Q Consensus 350 ~li~~~---~--~~~~---~~~A~~~~~~~~~~-~~~~~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 415 (831)
.++..- . ..++ .+.|+.-++.+... +..|... ...-.+-++...++..++++.|+.+...+.+...
T Consensus 248 ~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~ 327 (822)
T PRK14574 248 EQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD 327 (822)
T ss_pred HHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH
Confidence 111100 0 1112 34455555655542 2223211 1223445566777777777777777777765555
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCC---------
Q 003315 416 VCYDVIVDSLCKLGEVEKAMILFKEMKDRQ-----IVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGH--------- 481 (831)
Q Consensus 416 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------- 481 (831)
.+-..+.++|...++.++|+.+|+.+.... ..++......|..+|..++++++|..+++++.+..+
T Consensus 328 y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~ 407 (822)
T PRK14574 328 YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLP 407 (822)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCC
Confidence 566777777777777777777777765432 122333345677777777777777777777766322
Q ss_pred ----CCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---
Q 003315 482 ----KPDII-TYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN--- 553 (831)
Q Consensus 482 ----~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--- 553 (831)
.||-. .+..++..+...|+..+|++.++++.... |-|..........+...|...+|+..++.....+|..
T Consensus 408 ~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~ 486 (822)
T PRK14574 408 GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLIL 486 (822)
T ss_pred CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHH
Confidence 01111 12223444555566666666666665543 4455555555555566666666666665555555544
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003315 554 YSAMINGYCKTGHTKEAFQLFMRLSNQ 580 (831)
Q Consensus 554 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (831)
....+..+...+++.+|..+.+++.+.
T Consensus 487 ~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 487 ERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 223344444555555555555555444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-13 Score=139.37 Aligned_cols=609 Identities=10% Similarity=-0.019 Sum_probs=458.4
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHH
Q 003315 96 KEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDA 175 (831)
Q Consensus 96 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (831)
++..+|.-++..+.+.++. +|..|-.-++.=-..|++..|..+..+-.+..+. +..+|..
T Consensus 265 ~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cpr-------------------SeDvWLe 324 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEECPR-------------------SEDVWLE 324 (913)
T ss_pred HHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCc-------------------hHHHHHH
Confidence 4778899999988877644 6677877777777788888888877765555333 4444544
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 003315 176 MIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGS 255 (831)
Q Consensus 176 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 255 (831)
. ++..-.+.|..+..++.+..+. ++..|......- .+...=.+++...+++ +|.++..|-. ......
T Consensus 325 a----iRLhp~d~aK~vvA~Avr~~P~-Sv~lW~kA~dLE---~~~~~K~RVlRKALe~-iP~sv~LWKa----AVelE~ 391 (913)
T KOG0495|consen 325 A----IRLHPPDVAKTVVANAVRFLPT-SVRLWLKAADLE---SDTKNKKRVLRKALEH-IPRSVRLWKA----AVELEE 391 (913)
T ss_pred H----HhcCChHHHHHHHHHHHHhCCC-ChhhhhhHHhhh---hHHHHHHHHHHHHHHh-CCchHHHHHH----HHhccC
Confidence 4 3466778888888888877533 555554333322 2223334667776665 3445555543 445667
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 003315 256 MQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLH 335 (831)
Q Consensus 256 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 335 (831)
.+.|.-++.++.+. ++..... .-+|.+..-|+.|..+++++.+. +|.++.+|..-...--.+|+.+...+++.+
T Consensus 392 ~~darilL~rAvec-cp~s~dL----wlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~r 465 (913)
T KOG0495|consen 392 PEDARILLERAVEC-CPQSMDL----WLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDR 465 (913)
T ss_pred hHHHHHHHHHHHHh-ccchHHH----HHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 77799999998875 2333333 34566677789999999998886 688899999888888899999998888766
Q ss_pred H----HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003315 336 M----EKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTN--CGVLSVILKGLCQKGMASATIKQFLEFKDM 409 (831)
Q Consensus 336 ~----~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 409 (831)
- ...|+..+...|..=...+-..|-.--+..+....+..|+.-. ..|+..-...|.+.+.++-+..+|...++.
T Consensus 466 gl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv 545 (913)
T KOG0495|consen 466 GLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV 545 (913)
T ss_pred HHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh
Confidence 4 4468888888998888888888999999999999888876543 357888888999999999999999988875
Q ss_pred CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHH
Q 003315 410 GFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYN 489 (831)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 489 (831)
-+ .+...|......--..|..++-..+|++.... .+.....|-.....+-..|+...|..++.+..+.++. +...|.
T Consensus 546 fp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwl 622 (913)
T KOG0495|consen 546 FP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWL 622 (913)
T ss_pred cc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHH
Confidence 33 35677777777777789999999999998865 3345566666677778889999999999999888655 778888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcCC
Q 003315 490 VLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTGH 566 (831)
Q Consensus 490 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~ 566 (831)
.-+.....+.+++.|..+|.+.... .++..+|.--+....-.+..++|.+++++..+.-|.- |-.++..+-+.++
T Consensus 623 aavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ 700 (913)
T KOG0495|consen 623 AAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMEN 700 (913)
T ss_pred HHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHH
Confidence 8888999999999999999998864 5677777666666667899999999999998887765 7888888999999
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003315 567 TKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNV 646 (831)
Q Consensus 567 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 646 (831)
.+.|.+.|..=.+.-+. .+..|..+...-.+.|.+-.|..++++....+ +-+...|...+.+-.+.|..++|..+..+
T Consensus 701 ie~aR~aY~~G~k~cP~-~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 701 IEMAREAYLQGTKKCPN-SIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHHHHHHHhccccCCC-CchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99998888654444322 45567777777778899999999999998876 56778899999999999999999999999
Q ss_pred HHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHH
Q 003315 647 LVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDAS 726 (831)
Q Consensus 647 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 726 (831)
+++. ++.+-..|..-|....+.++--++.+.+++.. -|......+-..+- ....+++|.
T Consensus 779 ALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce-----~dphVllaia~lfw---------------~e~k~~kar 837 (913)
T KOG0495|consen 779 ALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE-----HDPHVLLAIAKLFW---------------SEKKIEKAR 837 (913)
T ss_pred HHHh-CCccchhHHHHHHhccCcccchHHHHHHHhcc-----CCchhHHHHHHHHH---------------HHHHHHHHH
Confidence 9876 34466778888888777777666666666653 23333333322222 135689999
Q ss_pred HHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 003315 727 VFWNEMKEMGIRPDV-ISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPD 775 (831)
Q Consensus 727 ~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd 775 (831)
+.|.+..+.+ ||. .+|..+...+.+.|.-++-.+++.+... .+|.
T Consensus 838 ~Wf~Ravk~d--~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~ 883 (913)
T KOG0495|consen 838 EWFERAVKKD--PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPT 883 (913)
T ss_pred HHHHHHHccC--CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCC
Confidence 9999988643 544 6898888989999998888899888876 4554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-15 Score=147.57 Aligned_cols=476 Identities=12% Similarity=0.068 Sum_probs=289.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----hhhHHHHHH
Q 003315 244 VIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAY-STCIEGLCMNGMLDLGYELLLKWEEADIPLS----AFAYTVVIR 318 (831)
Q Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~ 318 (831)
..|...|.......+|+..|+-+.+..+-|+.-.. ..+...+.+..++.+|+++|+-.+..-...+ ....+.+..
T Consensus 205 ~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigv 284 (840)
T KOG2003|consen 205 FNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGV 284 (840)
T ss_pred HHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCe
Confidence 34455566667777888888877776655665332 2344667777888888888877776521112 234455556
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhH--------HHHHHHH
Q 003315 319 WFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVL--------SVILKGL 390 (831)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--------~~ll~~~ 390 (831)
.|++.|.++.|..-|+...+. .|+..+-..|+-++..-|+-++..+.|++|+.....+|..-| ..++.-.
T Consensus 285 tfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred eEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 677889999999999888876 577766666666677788888888888888765433332211 1111111
Q ss_pred HhcCC--------hHHHHHHHHH---HHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 003315 391 CQKGM--------ASATIKQFLE---FKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICG 459 (831)
Q Consensus 391 ~~~~~--------~~~a~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 459 (831)
.+... -..|.+.... +..--+.|+- ..| .+-+++.++.-.-.....+. -..-...
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~f-----------a~g-~dwcle~lk~s~~~~la~dl--ei~ka~~ 428 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDF-----------AAG-CDWCLESLKASQHAELAIDL--EINKAGE 428 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccch-----------hcc-cHHHHHHHHHhhhhhhhhhh--hhhHHHH
Confidence 11110 0111111111 1110111110 000 11122222211100000000 0111234
Q ss_pred HHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHH
Q 003315 460 YCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGA--FAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVE 537 (831)
Q Consensus 460 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 537 (831)
|.++|+++.|.++++-+....-+.-...-+.+-.. +.--.++..|.++-+..+... .-+......-.......|+++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHH
Confidence 77889999999988877654322222222222222 222336677777766665432 223322222223334578899
Q ss_pred HHHHHHHHhhhCCCCChH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 538 EAEAFLDGLKGKCLENYS---AMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMIT 614 (831)
Q Consensus 538 ~a~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 614 (831)
+|...+++....+...-. .++-.+-..|+.++|+++|-++...=. .+...+..+...|..+.++.+|++++.++..
T Consensus 508 ka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 999999988877665433 344556778999999999887654322 2667788888888888999999999887776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003315 615 LNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTY 694 (831)
Q Consensus 615 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 694 (831)
. ++.|+.+.+.|.+.|-+.|+-.+|.+.+-.-.+. ++.++.+..-|...|....-+++|+.+|++..- +.|+...|
T Consensus 587 l-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kw 662 (840)
T KOG2003|consen 587 L-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKW 662 (840)
T ss_pred c-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHH
Confidence 4 3667888999999999999999998887665554 445788888888888888888999999988754 67888888
Q ss_pred HHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 003315 695 TVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEP 774 (831)
Q Consensus 695 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 774 (831)
..++..|.+ +.|++.+|+++++...++ ++.
T Consensus 663 qlmiasc~r-------------------------------------------------rsgnyqka~d~yk~~hrk-fpe 692 (840)
T KOG2003|consen 663 QLMIASCFR-------------------------------------------------RSGNYQKAFDLYKDIHRK-FPE 692 (840)
T ss_pred HHHHHHHHH-------------------------------------------------hcccHHHHHHHHHHHHHh-Ccc
Confidence 888777744 556666666666666554 555
Q ss_pred CHHHHHHHHHHHHhcCC
Q 003315 775 DTVTYTALLCGYLAKGD 791 (831)
Q Consensus 775 d~~~~~~l~~~~~~~g~ 791 (831)
|.....-|++.+...|-
T Consensus 693 dldclkflvri~~dlgl 709 (840)
T KOG2003|consen 693 DLDCLKFLVRIAGDLGL 709 (840)
T ss_pred chHHHHHHHHHhccccc
Confidence 66666666666666554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.3e-15 Score=143.30 Aligned_cols=493 Identities=14% Similarity=0.082 Sum_probs=319.4
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhH-HHHHHHHHHcCChhHHHHHHHHHHhcCCCCCh----h
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSC-NYFMNQLVECGKVDMALAVYQHLKRLGLSLNE----Y 241 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~ 241 (831)
..+-.+...|++-|....++.+|+..|+-+.+....|+.... ..+.+.+.+.+++.+|++.|.-.+..-...+. .
T Consensus 198 dltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rik 277 (840)
T KOG2003|consen 198 DLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIK 277 (840)
T ss_pred cchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHH
Confidence 344557788999999999999999999988887666665543 34667888999999999999877654211122 2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhH--------
Q 003315 242 TYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAY-------- 313 (831)
Q Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------- 313 (831)
..+.+.-.+.+.|+++.|+..|+...+. .|+..+-..|+-++..-|+-++..+.|.+++..-..+|..-|
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 3444445577899999999999988776 688887777777788889999999999999875333332211
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 003315 314 TVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQK 393 (831)
Q Consensus 314 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 393 (831)
..|+.--.+.. .++.|.+.+ ..+-++++-.-.+++.--+.|+-.. =...|
T Consensus 356 ~~ll~eai~nd-------~lk~~ek~~-----------------ka~aek~i~ta~kiiapvi~~~fa~---g~dwc--- 405 (840)
T KOG2003|consen 356 DNLLNEAIKND-------HLKNMEKEN-----------------KADAEKAIITAAKIIAPVIAPDFAA---GCDWC--- 405 (840)
T ss_pred hHHHHHHHhhH-------HHHHHHHhh-----------------hhhHHHHHHHHHHHhccccccchhc---ccHHH---
Confidence 11111111111 111121110 0112222222222222222222110 00000
Q ss_pred CChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc--cCChhhHHH
Q 003315 394 GMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCL--QGKLGDALD 471 (831)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~ 471 (831)
++.+..-.......+.. . .-...+.+.|+++.|+++++-..++........-+.|-..+.- ..++.+|.+
T Consensus 406 ------le~lk~s~~~~la~dle-i-~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqq 477 (840)
T KOG2003|consen 406 ------LESLKASQHAELAIDLE-I-NKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQ 477 (840)
T ss_pred ------HHHHHHhhhhhhhhhhh-h-hHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHH
Confidence 00000000000000000 0 1123456889999999999887766333222223333222222 346777777
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC--
Q 003315 472 LFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGK-- 549 (831)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 549 (831)
.-+...... .-+......-......+|++++|.+.+++.+...-.-....|+. .-.+...|++++|.+.|-++...
T Consensus 478 yad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~ 555 (840)
T KOG2003|consen 478 YADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILL 555 (840)
T ss_pred HHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHH
Confidence 777665432 11222222223334467899999999999986543333333443 33577889999999998876543
Q ss_pred -CCCChHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003315 550 -CLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLI 628 (831)
Q Consensus 550 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 628 (831)
+.+..-.+...|-...+..+|++++.+....-+ .|+.++..+...|-+.|+..+|.+.+-...+. ++.+..+...|.
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~slip-~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ 633 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIP-NDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLA 633 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCC-CCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHH
Confidence 444466677888888999999999988766533 48889999999999999999999987666554 467888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccc
Q 003315 629 GALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGY-CKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINL 706 (831)
Q Consensus 629 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 706 (831)
..|....-+++|..+|++..- ++|+..-|..|+..| .+.|++++|+++|++..++ ++-|......|++.|..+|+
T Consensus 634 ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 999999999999999998876 489999999887655 5889999999999999875 66677778888888877665
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.5e-13 Score=128.88 Aligned_cols=421 Identities=12% Similarity=0.100 Sum_probs=282.5
Q ss_pred HHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHh--cCCCchhHH--HHHHHHhc
Q 003315 88 VEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRK--KTDANFEAT--DLIEALCG 163 (831)
Q Consensus 88 ~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~--~~~~~~~~ 163 (831)
+..+.++ |....+--+|+.+.+.|..-++.+-..+.+..+..+.-+--..-.+..+.. .++.+-..+ ..+..+..
T Consensus 122 L~kmIS~-~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~ 200 (625)
T KOG4422|consen 122 LLKMISS-REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLF 200 (625)
T ss_pred HHHHHhh-cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHH
Confidence 3344454 578888889999998888778888878877766544332221111111211 111111110 11222444
Q ss_pred CCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhH
Q 003315 164 EGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTY 243 (831)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 243 (831)
+..+-++.++..++...++--..+.|.++|........+.+..++|.++.+-.-... .++..+|......||..|+
T Consensus 201 E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 201 ETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred hhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhH
Confidence 556778889999999999999999999999998887778889999999877654433 6788889988889999999
Q ss_pred HHHHHHHHhcCChHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHHC----C----CCCCh
Q 003315 244 VIVIKALCKKGSMQE----AVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDL-GYELLLKWEEA----D----IPLSA 310 (831)
Q Consensus 244 ~~l~~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~----~~~~~ 310 (831)
|+++....+.|+++. |++++.+|++.|+.|...+|..+|..+++.++..+ +..++.++... . .|.+.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 999999999998765 56778899999999999999999999999888755 44455554432 1 23456
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhH
Q 003315 311 FAYTVVIRWFCDQNKLEKAECVLLHMEKQG----VVPD---VYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVL 383 (831)
Q Consensus 311 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 383 (831)
..|..-+..|.+..+.+-|.++..-+.... +.|+ ...|..+....|+....+....+|+.|+-+-.-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 677788888889999999998887765431 2222 234667888899999999999999999988888999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcC-CH--------H-----HHHHHHH-------HHH
Q 003315 384 SVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLG-EV--------E-----KAMILFK-------EMK 442 (831)
Q Consensus 384 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~-----~A~~~~~-------~~~ 442 (831)
..++++....+.++-.-+++.+++..|...+.....-++..+++.. +. . -|..+++ ++.
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r 516 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR 516 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999888775555544444444444433 10 0 0111111 111
Q ss_pred hCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCC-CCCcchHH---HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003315 443 DRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGH-KPDIITYN---VLAGAFAQYGAVQKAFDLLNYMKRHG 515 (831)
Q Consensus 443 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~ 515 (831)
+. .......+..+-.+.+.|..++|.++|..+...+- -|-....+ -+++.-.+.++...|..+++.|...+
T Consensus 517 ~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 517 AQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred hc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 11 12233344444445566666666666665543321 12222233 33334444555556666666555444
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-13 Score=131.42 Aligned_cols=340 Identities=16% Similarity=0.192 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHH--cCChhHH-HHHHHHHHhcCCCCChhhHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVE--CGKVDMA-LAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
.-+.|++ ....|.+.++.-+|++|...|.+-+...-..+++...- ..+..-| ++.|-.|.+.| ..+..+|
T Consensus 118 ~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW----- 190 (625)
T KOG4422|consen 118 TENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW----- 190 (625)
T ss_pred chhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc-----
Confidence 3345555 36688999999999999999877777666666554332 2222211 12233333322 1111222
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhH
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEK 328 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 328 (831)
+.|...+ ++-+.. +.+..++..+|.++|+--..+.|.+++++..+...+.+..+||.+|.+-.-. .
T Consensus 191 ---K~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~ 256 (625)
T KOG4422|consen 191 ---KSGAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----V 256 (625)
T ss_pred ---ccccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----c
Confidence 2222211 111111 2233444455555554444455555554444443344444444444332211 1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHH-HHHHH
Q 003315 329 AECVLLHMEKQGVVPDVYAYSALISGYCKFGKINK----ALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASA-TIKQF 403 (831)
Q Consensus 329 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~ 403 (831)
-.+++.+|..+.+.||..|+|++++...+.|+++. |.+++.+|++.|+.|...+|..++...++.++..+ +..++
T Consensus 257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 14444555554455555555555555555554432 23444444455555555555555554444444322 22222
Q ss_pred HHHHH----CCCC----cCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---hhhHHHHHHHHHccCChhh
Q 003315 404 LEFKD----MGFF----LNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQ----IVPD---VVNYTTMICGYCLQGKLGD 468 (831)
Q Consensus 404 ~~~~~----~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~ 468 (831)
.++.. ..+. .+...|...+..|.+..+.+-|.++..-..... +.|+ ..-|..+....|+....+.
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 1111 123344455555556666666655554443221 1111 1234445555666666777
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003315 469 ALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCM 532 (831)
Q Consensus 469 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 532 (831)
-+..++.|.-.-.-|+..+...++++....|.++-.-++|.+++..|..........++..+++
T Consensus 417 ~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 417 TLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred HHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 7777777766555566666677777777777777777777777766655444444444444443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-12 Score=127.93 Aligned_cols=431 Identities=11% Similarity=0.033 Sum_probs=272.8
Q ss_pred HHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcch
Q 003315 90 KLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLL 169 (831)
Q Consensus 90 ~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (831)
..-..+++.+.|.++|+.+...+. .+...|..-+..=+++...+.|..++...+...|. .
T Consensus 81 qwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-------------------V 140 (677)
T KOG1915|consen 81 QWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-------------------V 140 (677)
T ss_pred HHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-------------------H
Confidence 333456677888888888876553 37778888888888888888888888887776443 3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA 249 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (831)
...|...+..--..|+...|.++|++-.+- .|+..++++.++.-.+-+..+.|..+|++.+-. .|++.+|....+.
T Consensus 141 dqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarF 216 (677)
T KOG1915|consen 141 DQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARF 216 (677)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHH
Confidence 345666666666778888888888887764 677888888888888888888888888888763 4888888888888
Q ss_pred HHhcCChHHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCC
Q 003315 250 LCKKGSMQEAVEVFLEMEKA-GV-TPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLS--AFAYTVVIRWFCDQNK 325 (831)
Q Consensus 250 ~~~~g~~~~A~~~~~~m~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 325 (831)
-.++|....|..+|+.+.+. |- ..+...+.+...--.++..++.|.-+|.-.++. +|.+ ...|..+...--+.|+
T Consensus 217 E~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd 295 (677)
T KOG1915|consen 217 EEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGD 295 (677)
T ss_pred HHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcc
Confidence 88888888888888887764 21 112233444444444667777888888777765 3333 4455555544444555
Q ss_pred HhHHHH--------HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh-------hHHHHHHHH
Q 003315 326 LEKAEC--------VLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCG-------VLSVILKGL 390 (831)
Q Consensus 326 ~~~A~~--------~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~ll~~~ 390 (831)
-...++ .++.+.+.++. |-.+|--.+..--..|+.+...++|+..+.+ ++|-.. +|.-+--++
T Consensus 296 ~~gIEd~Iv~KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYal 373 (677)
T KOG1915|consen 296 KEGIEDAIVGKRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYAL 373 (677)
T ss_pred hhhhHHHHhhhhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHH
Confidence 433332 24455555443 6667777777777778888888888887765 333211 111111111
Q ss_pred ---HhcCChHHHHHHHHHHHHCCCCcCHhhHHHH----HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 003315 391 ---CQKGMASATIKQFLEFKDMGFFLNKVCYDVI----VDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQ 463 (831)
Q Consensus 391 ---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 463 (831)
....+.+.+.++|+..++. ++....|+..+ .....+..++..|.+++.... |..|...+|...|..=.+.
T Consensus 374 yeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL 450 (677)
T KOG1915|consen 374 YEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQL 450 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHH
Confidence 1345666666666666652 22233343333 233335566666766666554 3355666666666666666
Q ss_pred CChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 003315 464 GKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHG-LEPNFVTHNMIIEGLCMGGRVEEAEAF 542 (831)
Q Consensus 464 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~ 542 (831)
+++|.+..++++.++.++. +..+|......-...|+.+.|..+|.-+++.. .......+...|..-...|.++.|..+
T Consensus 451 ~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~L 529 (677)
T KOG1915|consen 451 REFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARAL 529 (677)
T ss_pred hhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHH
Confidence 7777777777777766544 55666666666666677777777777666532 122234455555555566677777777
Q ss_pred HHHhhhCCC
Q 003315 543 LDGLKGKCL 551 (831)
Q Consensus 543 ~~~~~~~~~ 551 (831)
++.+.....
T Consensus 530 YerlL~rt~ 538 (677)
T KOG1915|consen 530 YERLLDRTQ 538 (677)
T ss_pred HHHHHHhcc
Confidence 666665543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-12 Score=125.27 Aligned_cols=476 Identities=11% Similarity=0.032 Sum_probs=302.0
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCh-hhHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNE-YTYVIVI 247 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~ 247 (831)
+...|..-++.-..++++..|..+|++++.-+.. ++..+...+..-.+++.+..|..++++.+.. -|-+ ..|.-.+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHH
Confidence 4556777777778899999999999999988744 8888999999999999999999999999875 2443 3455555
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHh
Q 003315 248 KALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLE 327 (831)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 327 (831)
..--..|+...|.++|++-.+. .|+..+|.+.|..-.+-+.++.|..+|++.+-. .|++..|...++.--+.|...
T Consensus 149 ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHH
Confidence 5555689999999999999876 899999999999999999999999999999876 489999999999999999999
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHH
Q 003315 328 KAECVLLHMEKQGVV--PDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTN-CGVLSVILKGLCQKGMASATIKQFL 404 (831)
Q Consensus 328 ~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~ 404 (831)
.|..+|+...+.--. -+...+.++...=..+..++.|..+|+-.++.=++.. ...+..+...--+-|+........-
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 999999998874111 1223344444444567778888888888876522211 1122222221112222211111100
Q ss_pred HHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCC
Q 003315 405 EFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPD 484 (831)
Q Consensus 405 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 484 (831)
.+-.--++.+...+ +.|-.+|--.+..--..|+.+...+++++.+..-++..
T Consensus 305 ---------------------------~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ 356 (677)
T KOG1915|consen 305 ---------------------------GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPAS 356 (677)
T ss_pred ---------------------------hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchh
Confidence 00000122222221 22444455555555555666666666666554322111
Q ss_pred c-chHHHHH----H-HH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HcCCCHHHHHHHHHHhhhCCC
Q 003315 485 I-ITYNVLA----G-AF---AQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGL----CMGGRVEEAEAFLDGLKGKCL 551 (831)
Q Consensus 485 ~-~~~~~l~----~-~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~a~~~~~~~~~~~~ 551 (831)
. ..|...| + +| ....+.+.+.++++..++. +|....|+.-+--+| .++.++..|.+++...+..+|
T Consensus 357 ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cP 435 (677)
T KOG1915|consen 357 EKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCP 435 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCC
Confidence 1 0111111 0 11 2345566666666666653 333444444333333 245566666666666666666
Q ss_pred CC--hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHH
Q 003315 552 EN--YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLN-AEPSKSMYDKLI 628 (831)
Q Consensus 552 ~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~ 628 (831)
.. +...|..-.+.++++.+..++++.++-++. +-.++...+..-..+|+.+.|..+|+-++... .......|...|
T Consensus 436 K~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYI 514 (677)
T KOG1915|consen 436 KDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYI 514 (677)
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhh
Confidence 54 445555555666666666666666666554 55666666666667777777777777776532 122344566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH-----HcC-----------CHHHHHHHHHHHH
Q 003315 629 GALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYC-----KIN-----------CLREARDVFNDMK 683 (831)
Q Consensus 629 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~ 683 (831)
+-=...|.++.|+.+++.+++. .+...+|-++...-. +.+ +...|..+|++..
T Consensus 515 dFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 515 DFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred hhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 7677889999999999998876 445556666554433 333 4566777776654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.1e-10 Score=115.35 Aligned_cols=314 Identities=12% Similarity=0.128 Sum_probs=195.9
Q ss_pred cCChhhHHHHHHHHHHcCCCCC------cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcC
Q 003315 463 QGKLGDALDLFKEMKEMGHKPD------IITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPN---FVTHNMIIEGLCMG 533 (831)
Q Consensus 463 ~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 533 (831)
.|+..+-...+.++... +.|. ...|..+...|-..|+.+.|..+|++..+...+.- ..+|.....+-.+.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 45555556666655442 1121 12355556666666677777777766665433222 23444444444555
Q ss_pred CCHHHHHHHHHHhhhCC---------------------CCChHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 003315 534 GRVEEAEAFLDGLKGKC---------------------LENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKL 592 (831)
Q Consensus 534 g~~~~a~~~~~~~~~~~---------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 592 (831)
.+++.|.++++...... +..|...++.--..|-++....+++++.+..+. ++......
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~Ny 517 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINY 517 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 66666666665543221 111444555555667888888999999888765 66666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHhH--HHHHHHHH
Q 003315 593 ITNLLILRDNNNALKLFKTMITLNAEPSK-SMYDKLIGALCQ---AEEMEQAQLVFNVLVDKGLTPHLVT--YTMMIHGY 666 (831)
Q Consensus 593 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~ 666 (831)
...+-...-++++.+.+++-+..-..|+. .+|+..+..+.+ .-+++.|+.+|+++++ |++|...- |-.....-
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 66667778889999999988776545654 467777666654 3578999999999999 56654322 22222222
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCHHHH
Q 003315 667 CKINCLREARDVFNDMKQRGITPD--VVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISY 744 (831)
Q Consensus 667 ~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 744 (831)
-+.|....|+++|++.... +++. ...|++.|.--.. .-++.....+|++.++. -||...-
T Consensus 597 Ee~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae---------------~yGv~~TR~iYekaIe~--Lp~~~~r 658 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAE---------------IYGVPRTREIYEKAIES--LPDSKAR 658 (835)
T ss_pred HHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHH---------------HhCCcccHHHHHHHHHh--CChHHHH
Confidence 3668999999999998754 5553 3457777754332 12244456667766654 4554322
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 003315 745 ---TVLIAKLCNTQNLEDGITVFNEISDRGLEP--DTVTYTALLCGYLAKGDLDRAIAL 798 (831)
Q Consensus 745 ---~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--d~~~~~~l~~~~~~~g~~~~A~~~ 798 (831)
--..+.=++.|.+++|..++.-.-+. +.| +...|.+.=.-=.++|+-+-..+.
T Consensus 659 ~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 659 EMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 33445567899999999999887654 555 466688887778899994443333
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.1e-13 Score=130.90 Aligned_cols=220 Identities=16% Similarity=0.088 Sum_probs=172.6
Q ss_pred HHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 003315 460 YCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEA 539 (831)
Q Consensus 460 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 539 (831)
+.-.|+...|..-|+..+.....++ ..|-.+..+|...++.++....|++..+.+ +-++.+|..-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 3456888889999998888754422 237777778888899999999999988875 55666777777777778899999
Q ss_pred HHHHHHhhhCCCCC---hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003315 540 EAFLDGLKGKCLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLN 616 (831)
Q Consensus 540 ~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 616 (831)
..-|++....+|++ |-.+..+..+.++++++...|++....-+. .++.++...+.+...+++++|.+.|+.++...
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 99999999998887 444555566788999999999998887554 78889999999999999999999999988763
Q ss_pred CC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003315 617 AE-------PSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQ 684 (831)
Q Consensus 617 ~~-------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 684 (831)
.. +.+.+-..++-.-++ ++++.|..++.++.+.+++ ....|..|...-.+.|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22 122222333333355 8999999999999997655 567899999999999999999999998764
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-11 Score=124.17 Aligned_cols=505 Identities=12% Similarity=0.009 Sum_probs=331.6
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
+..-+..+.+-+..+.++..|.-+-+++...+ .|+...-.+++++.-.++++.|..+...-.-. ..|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 33445566666777888999999988887765 34555667888888888888888777654321 357778888888
Q ss_pred HHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 003315 249 ALCKKGSMQEAVEVFLEMEKA--GVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKL 326 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 326 (831)
.+.+..++++|..++...... .+.-+..+- +.-... +.+.+.. ........+..-...|....+.
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~---~~~l~~----n~~~~~~------~~~~essic~lRgk~y~al~n~ 157 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDA---ANTLEL----NSAGEDL------MINLESSICYLRGKVYVALDNR 157 (611)
T ss_pred HHHHHHHHHHHHHHhcccchhhcchhhcchhh---hceecc----Ccccccc------cccchhceeeeeeehhhhhccH
Confidence 888999999999888733110 111111110 000001 1111000 0011111222233455566677
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC----CCCHhhHHHHHHHHHhcCChHHHHHH
Q 003315 327 EKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGI----KTNCGVLSVILKGLCQKGMASATIKQ 402 (831)
Q Consensus 327 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~ 402 (831)
++|...|.+.... |...+.++...-.. ..-.+.+.++.+...+. +-+......+.........-+.....
T Consensus 158 ~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r 231 (611)
T KOG1173|consen 158 EEARDKYKEALLA----DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTR 231 (611)
T ss_pred HHHHHHHHHHHhc----chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccccccc
Confidence 7777777777654 44444443222111 01111111222211110 01111222222111000000000000
Q ss_pred HHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCC
Q 003315 403 FLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHK 482 (831)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 482 (831)
-.+..-.+..-+........+-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+.-+.
T Consensus 232 ~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~ 310 (611)
T KOG1173|consen 232 NEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS 310 (611)
T ss_pred CchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC
Confidence 0101112233355556666777788899999999999988763 345556666777888889888888777888776543
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC---CChHHHHH
Q 003315 483 PDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCL---ENYSAMIN 559 (831)
Q Consensus 483 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~ 559 (831)
...+|-++.--|...|+..+|.+.|.+..... +.-...+-.+...|.-.|+.|.|...+....+.-+ .++-.++.
T Consensus 311 -~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgm 388 (611)
T KOG1173|consen 311 -KALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGM 388 (611)
T ss_pred -CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHH
Confidence 77889999888888899999999999987643 22344677788889999999999998887765533 34666778
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C-C-CCHHHHHHHHHHHHh
Q 003315 560 GYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLN----A-E-PSKSMYDKLIGALCQ 633 (831)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~-p~~~~~~~l~~~~~~ 633 (831)
-|.+.++.+-|.+.|.++....+. |+..+..++-.....+.+.+|..+|+..+..- . . .-..+++.|+.+|.+
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 888999999999999999888765 88888888888888999999999998887211 0 1 134568889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 003315 634 AEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSK 703 (831)
Q Consensus 634 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 703 (831)
.+++++|...+++.+....+ |..++.++.-.|...|+++.|++.|.+.+- ++||..+...++..+..
T Consensus 468 l~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 99999999999999987555 899999999999999999999999999885 78998887777765543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-12 Score=137.26 Aligned_cols=289 Identities=13% Similarity=-0.001 Sum_probs=163.9
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 003315 322 DQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIK 401 (831)
Q Consensus 322 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 401 (831)
..|+++.|++.+.+..+.... ....+-....++.+.|+++.|.+.+.+..+....+
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~----------------------- 151 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGND----------------------- 151 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC-----------------------
Confidence 456666666666665554222 12233334455556666666666666655432111
Q ss_pred HHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCC
Q 003315 402 QFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGH 481 (831)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 481 (831)
...........+...|+++.|...++.+.+.... +...+..+...+...|++++|.+.+..+.+.++
T Consensus 152 ------------~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~ 218 (409)
T TIGR00540 152 ------------NILVEIARTRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL 218 (409)
T ss_pred ------------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 1112222345555566666666666666655322 444555666666666666666666666666543
Q ss_pred CCCcchHH-HHHHHH---HhcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCh
Q 003315 482 KPDIITYN-VLAGAF---AQYGAVQKAFDLLNYMKRHGL---EPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENY 554 (831)
Q Consensus 482 ~~~~~~~~-~l~~~~---~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 554 (831)
. +...+. ....++ ...+..+.+.+.+..+.+... +.+...+..+...+...|+.++|.+.+++..+..|++.
T Consensus 219 ~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 219 F-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence 3 222221 111111 222222223334444433221 13566666677777777777777777777777666653
Q ss_pred H---HHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCc--ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003315 555 S---AMIN--GYCKTGHTKEAFQLFMRLSNQGVLVKK--SSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKL 627 (831)
Q Consensus 555 ~---~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 627 (831)
. .++. .....++.+.+.+.+++..+..+. |+ .....+++.+.+.|++++|.+.|+.+......|+..++.++
T Consensus 298 ~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 298 AISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred cchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence 2 1222 223346667777777777766544 44 56667777777888888888877754444446777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 003315 628 IGALCQAEEMEQAQLVFNVLVD 649 (831)
Q Consensus 628 ~~~~~~~g~~~~A~~~~~~~~~ 649 (831)
...+.+.|+.++|.++|++...
T Consensus 377 a~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888777776543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.7e-11 Score=118.73 Aligned_cols=509 Identities=11% Similarity=0.027 Sum_probs=258.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 003315 239 NEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIR 318 (831)
Q Consensus 239 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 318 (831)
+..-+..+.+-+..+.++..|.-+-++....+..| ...--+.+++.-.|++..|..+...-.-. ..+..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp--~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDP--ADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCh--HHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 45566677777777788888888888877654344 44445678888888888887777665332 346677777788
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHH
Q 003315 319 WFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASA 398 (831)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 398 (831)
++.+..++++|..++..... ..+...|..-=. ...-..+.+. ++. ++.........-.+.|....+.++
T Consensus 91 ~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~--~~~l~~n~~~----~~~--~~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDA--ANTLELNSAG----EDL--MINLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHHHhcccch---hhcchhhcchhh--hceeccCccc----ccc--cccchhceeeeeeehhhhhccHHH
Confidence 88888888888888763311 111111110000 0000000111 000 011111111112223444445555
Q ss_pred HHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CChhhHHHHHHHH-HccCChhhHHHHH
Q 003315 399 TIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIV----PDVVNYTTMICGY-CLQGKLGDALDLF 473 (831)
Q Consensus 399 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~-~~~g~~~~A~~~~ 473 (831)
|...|.+.... |...+..+...-.. .+-.+.+.++.+...... -+......+.... ++..+ ++....-
T Consensus 160 ar~~Y~~Al~~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r~ 232 (611)
T KOG1173|consen 160 ARDKYKEALLA----DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRN-EESLTRN 232 (611)
T ss_pred HHHHHHHHHhc----chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcc-ccccccC
Confidence 55555555443 22222222211110 111111112222111000 0111111111100 00000 0000000
Q ss_pred HHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC
Q 003315 474 KEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN 553 (831)
Q Consensus 474 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 553 (831)
.+..-.+..-+........+-+...+++.+..++.+...+.. +++...+..-|.++...|+..+-..+=.++.+..|..
T Consensus 233 ~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~ 311 (611)
T KOG1173|consen 233 EDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSK 311 (611)
T ss_pred chhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCC
Confidence 000011122244444445555556666666666666666543 4444455555555666666555555545555554443
Q ss_pred ---hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003315 554 ---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGA 630 (831)
Q Consensus 554 ---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 630 (831)
|-+++--|.-.|++++|..+|.+....++. -...|...+..+.-.+.-++|...+..+.+.- +-...-+.-++--
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgme 389 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGME 389 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHH
Confidence 555555555556666666666665554433 22344444555555555555555554444321 1011111112223
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCC
Q 003315 631 LCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSS 710 (831)
Q Consensus 631 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 710 (831)
|.+.+..+.|.++|.++....+. |+...+-+.-...+.+.+.+|...|+..++. .
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~--i---------------------- 444 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEV--I---------------------- 444 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHH--h----------------------
Confidence 44455555555555555543222 4445555554444555555555555544411 0
Q ss_pred CCCchhhcccCHHHHHHHHHHHHHcC-CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003315 711 SSPDALQCKEDVVDASVFWNEMKEMG-IR-PDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLA 788 (831)
Q Consensus 711 ~~~~~~~~~~~~~~a~~~~~~m~~~~-~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~ 788 (831)
++.+ -+ --..+++.|+.++.+.+++++|+..+++.+.. .+.|+.++.+++-.|..
T Consensus 445 ----------------------k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~l 501 (611)
T KOG1173|consen 445 ----------------------KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHL 501 (611)
T ss_pred ----------------------hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHH
Confidence 0000 01 12346788999999999999999999999986 55688999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003315 789 KGDLDRAIALVDEMSVKGIQGDDYTKSSLERGIE 822 (831)
Q Consensus 789 ~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~ 822 (831)
.|+++.|.+.|.+.+. +.||+.+...++.-..
T Consensus 502 lgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 502 LGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred hcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 9999999999999887 8999977776665433
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-11 Score=127.98 Aligned_cols=269 Identities=14% Similarity=0.156 Sum_probs=148.4
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNA 275 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 275 (831)
+...|+.|+-.+|..++..|+..|+.+.|- +|.-|.-...+.+...++.++.+..+.++.+.+. .|-.
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 344455555555555555555555555555 5555544444444555555555555555544443 3455
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 003315 276 FAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEK-QGVVPDVYAYSALISG 354 (831)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~li~~ 354 (831)
.+|..|..+|...||... ++..++ -...+...+...|--..-..++..+.- .+.-||..+ .+..
T Consensus 84 Dtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~ill 148 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILL 148 (1088)
T ss_pred hHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHH
Confidence 555555555555555443 111111 011122223333333333333322111 112233222 2333
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHH
Q 003315 355 YCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKG-MASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEK 433 (831)
Q Consensus 355 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 433 (831)
..-.|-|+.+++++..+....... +...+++-+.... .+++...+...... .++..+|..+++.-...|+++.
T Consensus 149 lv~eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~ 222 (1088)
T KOG4318|consen 149 LVLEGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDG 222 (1088)
T ss_pred HHHHHHHHHHHHHHhhCCcccccc---hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhh
Confidence 334455666666655443221110 1111233333222 22222222222222 5788889999999889999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCC
Q 003315 434 AMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGA 500 (831)
Q Consensus 434 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 500 (831)
|..++.+|++.|++.+.+-|..|+-+ .++...+..+++.|.+.|+.|+..|+...+..+..+|.
T Consensus 223 Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 223 AKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99999999999998888888888765 77888888888899999999999998888877777555
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.5e-13 Score=137.09 Aligned_cols=266 Identities=12% Similarity=0.033 Sum_probs=207.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHccCChhhHHHHHHH-HHHcCCCCCcchHHHHH
Q 003315 416 VCYDVIVDSLCKLGEVEKAMILFKEMKDRQI--VPDVVNYTTMICGYCLQGKLGDALDLFKE-MKEMGHKPDIITYNVLA 492 (831)
Q Consensus 416 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~ 492 (831)
.+...+..+|...+++++|.++|+.+.+... .-+..+|.+.+-.+-+ +-++..+.+ +.+.. +-.+.+|..+.
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~~-~~sPesWca~G 428 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQDLIDTD-PNSPESWCALG 428 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHHHHHHhhC-CCCcHHHHHhc
Confidence 5556677778888888888888888776421 1255567766644321 233333332 33332 34678999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHH---HHHHHHhcCCHHH
Q 003315 493 GAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSA---MINGYCKTGHTKE 569 (831)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~ 569 (831)
..|.-+++.+.|++.|++.++.+ +....+|+.+..-+....++|.|.+.|+.....+|.+||+ |+..|.++++++.
T Consensus 429 NcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~ 507 (638)
T KOG1126|consen 429 NCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEF 507 (638)
T ss_pred chhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhH
Confidence 99999999999999999998763 3467888888888888889999999999999999988666 6788999999999
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003315 570 AFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVD 649 (831)
Q Consensus 570 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 649 (831)
|.-.|+++.+.++. +......++..+.+.|+.++|+++++++...+ +-|+..--..+..+...+++++|...++++.+
T Consensus 508 Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 508 AEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 99999999998876 78888889999999999999999999999876 34444445567788899999999999999998
Q ss_pred CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003315 650 KGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPD 690 (831)
Q Consensus 650 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 690 (831)
.-++ +...|..+...|.+.|+.+.|+.-|.-+.+...++.
T Consensus 586 ~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 586 LVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 6333 667888999999999999999999988887544443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.9e-11 Score=118.11 Aligned_cols=255 Identities=14% Similarity=0.116 Sum_probs=186.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCC--CCcchHHHHHHHHHhcCC
Q 003315 423 DSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHK--PDIITYNVLAGAFAQYGA 500 (831)
Q Consensus 423 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 500 (831)
.++-...+.+++..-.+...+.|++-+...-+....+.-.+.++++|+.+|+++.+..+- -|..+|..++ |.++.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh
Confidence 344444566666666666666666655544444445555667778888888877766321 1445555444 223222
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcCCHHHHHHHHHHH
Q 003315 501 VQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTGHTKEAFQLFMRL 577 (831)
Q Consensus 501 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~ 577 (831)
-. +.++..-...-.+--+.|...+.+-|+-.++.++|...|+...+.+|.. |..|+.-|....+...|++.++.+
T Consensus 313 sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 313 SK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 21 1122211111012234566777777888888888888888888888776 788888899999999999999999
Q ss_pred HhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 003315 578 SNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLV 657 (831)
Q Consensus 578 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 657 (831)
++.++. |-..|..++++|..++-..=|+-.|+++.... +-|..+|.+|+++|.+.++.++|.+.|..+...|-. +..
T Consensus 391 vdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~ 467 (559)
T KOG1155|consen 391 VDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGS 467 (559)
T ss_pred HhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chH
Confidence 888776 88889999999999999999999999998875 567889999999999999999999999999987544 668
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003315 658 TYTMMIHGYCKINCLREARDVFNDMKQ 684 (831)
Q Consensus 658 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 684 (831)
.+..|.+.|-+.++..+|...|++.++
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 899999999999999999999988765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.7e-12 Score=131.58 Aligned_cols=296 Identities=14% Similarity=0.027 Sum_probs=160.4
Q ss_pred HHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcCh
Q 003315 126 ILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSI 205 (831)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 205 (831)
+....|+++.|...+.+..+..+. ....+...+.+....|+++.|...+.++.+..+.+..
T Consensus 93 la~~~g~~~~A~~~l~~~~~~~~~-------------------~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l 153 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADHAAE-------------------PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNI 153 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhcCCC-------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCch
Confidence 344577777777777665544221 1223445566677778888888888777665433333
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HH---
Q 003315 206 CSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYS-TC--- 281 (831)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l--- 281 (831)
.........+...|+++.|...++.+.+.. |.++.....+...+.+.|++++|.+.++.+.+.+.. +...+. .-
T Consensus 154 ~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a 231 (409)
T TIGR00540 154 LVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKA 231 (409)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 333445667777788888888888877654 445667777777777888888888888877776533 222221 11
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCC---CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHh
Q 003315 282 IEGLCMNGMLDLGYELLLKWEEAD---IPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYA-YSALISGYCK 357 (831)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~ 357 (831)
...+...+..+++.+.+..+.+.. .+.++..+..++..+...|+.++|.+++++..+..+...... ..........
T Consensus 232 ~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~ 311 (409)
T TIGR00540 232 EIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK 311 (409)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC
Confidence 111122233333334444444432 113666677777777777777777777777776533211111 1111122233
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHH
Q 003315 358 FGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMIL 437 (831)
Q Consensus 358 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 437 (831)
.++.+.+.+.++...+.... |. +.....++...+.+.|++++|.+.
T Consensus 312 ~~~~~~~~~~~e~~lk~~p~-~~---------------------------------~~~ll~sLg~l~~~~~~~~~A~~~ 357 (409)
T TIGR00540 312 PEDNEKLEKLIEKQAKNVDD-KP---------------------------------KCCINRALGQLLMKHGEFIEAADA 357 (409)
T ss_pred CCChHHHHHHHHHHHHhCCC-Ch---------------------------------hHHHHHHHHHHHHHcccHHHHHHH
Confidence 45556666666555543211 11 013333444555555555555555
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHH
Q 003315 438 FKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEM 476 (831)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 476 (831)
|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 358 le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 358 FKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 553222222344444455555555555555555555543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-10 Score=112.93 Aligned_cols=362 Identities=12% Similarity=0.046 Sum_probs=269.5
Q ss_pred CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh--hH
Q 003315 306 IPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCG--VL 383 (831)
Q Consensus 306 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~ 383 (831)
...|...+......+.+.|..+.|.+.|......-+ -.-..|..|.... .+.+.+.. +.. +...|.. .-
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P-~~W~AWleL~~li---t~~e~~~~----l~~-~l~~~~h~M~~ 230 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYP-WFWSAWLELSELI---TDIEILSI----LVV-GLPSDMHWMKK 230 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCC-cchHHHHHHHHhh---chHHHHHH----HHh-cCcccchHHHH
Confidence 345666666666777788999999999988886522 1444454444332 22222222 111 1221111 11
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHH
Q 003315 384 SVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIV--PDVVNYTTMICGYC 461 (831)
Q Consensus 384 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~ 461 (831)
-.+..++....+.+++.+-.......|++.+...-+....+.....++++|+.+|+++.+..+- -|..+|+.++ |.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv 308 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HH
Confidence 2345566677789999999999999998888887777888888899999999999999876321 2566777776 44
Q ss_pred ccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 003315 462 LQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEA 541 (831)
Q Consensus 462 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 541 (831)
++.+- .+..+.+-.-.--+-.+.|..++.+-|+-.++.++|..+|++.++.+ +.....++.+..-|....+...|..
T Consensus 309 ~~~~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 309 KNDKS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred HhhhH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHH
Confidence 44322 22333222221123466788888889999999999999999999986 5567788888999999999999999
Q ss_pred HHHHhhhCCCCC---hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003315 542 FLDGLKGKCLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAE 618 (831)
Q Consensus 542 ~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 618 (831)
-++...+.+|.. |-.|+.+|.-.+.+.=|+-.|+++.+..+. |+..|..|+.+|.++++.++|+..|++++..+ .
T Consensus 386 sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 386 SYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 999999999887 667999999999999999999999998776 89999999999999999999999999999877 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003315 619 PSKSMYDKLIGALCQAEEMEQAQLVFNVLVDK----GLTPH--LVTYTMMIHGYCKINCLREARDVFNDMK 683 (831)
Q Consensus 619 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 683 (831)
.+...+..|.+.|-+.++.++|.+.|.+.++. |...+ ...---|..-+.+.+++++|........
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 56788999999999999999999999988762 33322 2222335666778888888877666554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-10 Score=123.25 Aligned_cols=655 Identities=12% Similarity=0.044 Sum_probs=321.2
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhc-CCCchhHHHHHHHHhcC-----CCcchHHHHHHHHH
Q 003315 105 FEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKK-TDANFEATDLIEALCGE-----GSTLLTRLSDAMIK 178 (831)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~ 178 (831)
+......|..|+..+|.+++..|+..|+.+.|- .|..+--.. |........++..-+.. .-.+.+.+|..|..
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ 91 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLK 91 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHH
Confidence 334456788999999999999999999988776 443322111 11111001111000000 11344556666666
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHh-cCCCCChhhHHHHHHHHHhcCChH
Q 003315 179 AYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKR-LGLSLNEYTYVIVIKALCKKGSMQ 257 (831)
Q Consensus 179 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~ 257 (831)
+|...|+... |+...+ ....+...+...|--.....++..+.- .+.-||.. ..+....-.|-++
T Consensus 92 ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwa 156 (1088)
T KOG4318|consen 92 AYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWA 156 (1088)
T ss_pred HHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHH
Confidence 6666666554 222222 122333444444444444444433221 11123322 2333445567777
Q ss_pred HHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 003315 258 EAVEVFLEMEKAGV-TPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHM 336 (831)
Q Consensus 258 ~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 336 (831)
.+++++..+.-..- .|..+ .++-+.... .-..++........-.+++.++..++..-...|+++.|..++.+|
T Consensus 157 qllkll~~~Pvsa~~~p~~v----fLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQV----FLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHHhhCCcccccchHHH----HHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 77777766543211 11111 233333322 223333333333322588999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHh
Q 003315 337 EKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKV 416 (831)
Q Consensus 337 ~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 416 (831)
.+.|+..+...+-.|+-+ .++...+..++.-|.+.|+.|+..|+...+-.+..+|....+.+ |. +...
T Consensus 231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e--------~s-q~~h 298 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE--------GS-QLAH 298 (1088)
T ss_pred HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--------cc-chhh
Confidence 999988787777666655 78888888999999999999999999888777777655322211 11 2222
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHH------------HHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCC--C
Q 003315 417 CYDVIVDSLCKLGEVEKAMILFK------------EMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGH--K 482 (831)
Q Consensus 417 ~~~~l~~~~~~~g~~~~A~~~~~------------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~ 482 (831)
.+++-+..-.-.| ..|.+.++ +..-.|+.-...+|...+ -...+|+-++..++...+..-.. .
T Consensus 299 g~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s 375 (1088)
T KOG4318|consen 299 GFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDS 375 (1088)
T ss_pred hhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccC
Confidence 2222222222233 12222221 111123332333443322 23347777777777777653211 1
Q ss_pred -CCcchHHHHHHHHHhcCCHHHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhh----CCCCC--
Q 003315 483 -PDIITYNVLAGAFAQYGAVQKAFDLLN--YMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKG----KCLEN-- 553 (831)
Q Consensus 483 -~~~~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-- 553 (831)
.++..|..++.-|.+.-+.-....++. ..++. ..+....-.+.+...+. +...+.+-+..+.. ...++
T Consensus 376 ~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~--~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~ 452 (1088)
T KOG4318|consen 376 GQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSL--NLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWP 452 (1088)
T ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--hhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccch
Confidence 123334444444333221111111111 11111 11111111122222211 11111111111110 01111
Q ss_pred ---------hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHH
Q 003315 554 ---------YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLN--AEPSKS 622 (831)
Q Consensus 554 ---------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~ 622 (831)
-+.++..++..-+..+++..-++....-+ +..|..++.-++...+.+.|..+.++..... ...|..
T Consensus 453 ~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~ 529 (1088)
T KOG4318|consen 453 LIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLP 529 (1088)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccH
Confidence 22334444444444444433333222211 1455566666666666666666666554322 123334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003315 623 MYDKLIGALCQAEEMEQAQLVFNVLVDKGL-TPH-LVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDA 700 (831)
Q Consensus 623 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 700 (831)
-+..+.+.+.+.+....+..++.++.+.-. .|+ ..+.-.+.+.....|+.+...++.+-+...|+.-+ .-++..
T Consensus 530 ~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~v 605 (1088)
T KOG4318|consen 530 LMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMV 605 (1088)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEE
Confidence 455566666666666666666666654211 111 12222334444455555555555444444333221 000001
Q ss_pred hhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCHH---HHHHHHH------------------HHHhcCChHH
Q 003315 701 HSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVI---SYTVLIA------------------KLCNTQNLED 759 (831)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~------------------~~~~~g~~~~ 759 (831)
..++++...|.+.++...+ .++|.+. .+..++. .|.++|++.+
T Consensus 606 ---------------hLrkdd~s~a~ea~e~~~q-kyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~ 669 (1088)
T KOG4318|consen 606 ---------------HLRKDDQSAAQEAPEPEEQ-KYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVD 669 (1088)
T ss_pred ---------------EeeccchhhhhhcchHHHH-HhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccc
Confidence 1145677777877776653 2344443 3333322 2344455444
Q ss_pred HHHHHHHH--H-HCC---------CCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003315 760 GITVFNEI--S-DRG---------LEP---------DTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLE 818 (831)
Q Consensus 760 A~~~~~~~--~-~~g---------~~p---------d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~ 818 (831)
|.++.+.- . +.+ +.| +.....-|+..|.+.|+++.|..+|.++. +.|...+...|.
T Consensus 670 a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LA 746 (1088)
T KOG4318|consen 670 AGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLA 746 (1088)
T ss_pred hhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHH
Confidence 44433321 0 000 000 11233457778999999999999999998 788888888888
Q ss_pred HHHHhcc
Q 003315 819 RGIEKAR 825 (831)
Q Consensus 819 ~~~~~~~ 825 (831)
+.+.+-+
T Consensus 747 sIlr~~n 753 (1088)
T KOG4318|consen 747 SILRRMN 753 (1088)
T ss_pred HHHHhhc
Confidence 7776544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.6e-12 Score=122.14 Aligned_cols=223 Identities=13% Similarity=0.062 Sum_probs=175.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCH
Q 003315 422 VDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAV 501 (831)
Q Consensus 422 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 501 (831)
...+.-.|+.-.|..-|+........++ ..|..+...|....+.++-...|.+..+.++. +..+|..-.+...-.+++
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~ 410 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQY 410 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHH
Confidence 3345567888899999998887654433 23777777899999999999999999887765 788888888888888999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC---CChHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 502 QKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCL---ENYSAMINGYCKTGHTKEAFQLFMRLS 578 (831)
Q Consensus 502 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 578 (831)
++|..-|++.++.. +-+...|..+.-+..+.+++++++..|++..++-| +.|+.....+..++++++|.+.|+...
T Consensus 411 e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 411 EEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 99999999998864 44566666666667788999999999999988754 559999999999999999999999998
Q ss_pred hCCCCCC-----cccH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003315 579 NQGVLVK-----KSSC--NKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVD 649 (831)
Q Consensus 579 ~~~~~~~-----~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 649 (831)
+..+..+ ...+ ..++..-. .+++..|.++++++++.+ +-....|..|...-.+.|++++|.++|++...
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7755422 2111 12222222 289999999999999876 33456788899999999999999999998765
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-11 Score=130.30 Aligned_cols=127 Identities=13% Similarity=0.027 Sum_probs=58.6
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 003315 309 SAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILK 388 (831)
Q Consensus 309 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 388 (831)
++.....+++.+...|+.++|.+++++..+. .||... .++.+.+..++.+++++..+...+..+ -|...+..+..
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P-~~~~l~l~lgr 336 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG-DTPLLWSTLGQ 336 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 4444444445555555555555555444442 122211 112222233444445544444444322 13333444444
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 389 GLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMK 442 (831)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (831)
.+...+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++..
T Consensus 337 l~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 337 LLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555555555555544443 2445555556666666666666666666543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5e-09 Score=107.32 Aligned_cols=425 Identities=17% Similarity=0.102 Sum_probs=264.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHH
Q 003315 95 RKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSD 174 (831)
Q Consensus 95 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (831)
.+++...+.+.+.+... ++-.+++.....-.|...|+-++|....+..++.+.. +...|.
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-------------------S~vCwH 79 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-------------------SHVCWH 79 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-------------------cchhHH
Confidence 36788888888888764 3335666666677788899999999988877765433 556888
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG 254 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (831)
.++-.+...+++++|+..|+.++..+.. |...+.-+.-.-+..|+++.....-.++.+.. +.....|..++.++--.|
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g 157 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLG 157 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHH
Confidence 8998899999999999999999998744 77777777666778888888888888877753 334567888888888899
Q ss_pred ChHHHHHHHHHHHhCC-CCCCHHHHHHHH------HHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHh
Q 003315 255 SMQEAVEVFLEMEKAG-VTPNAFAYSTCI------EGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLE 327 (831)
Q Consensus 255 ~~~~A~~~~~~m~~~~-~~p~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 327 (831)
++..|..++++..+.. -.|+...+.... ....+.|.+++|.+.+...... +-.....-..-...+.+.++++
T Consensus 158 ~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lE 236 (700)
T KOG1156|consen 158 EYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLE 236 (700)
T ss_pred HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHH
Confidence 9999999999988753 235555444332 4456778888888877765443 1222233345567788999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCChHHHH-HHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 003315 328 KAECVLLHMEKQGVVPDVYAYSA-LISGYCKFGKINKAL-LLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLE 405 (831)
Q Consensus 328 ~A~~~~~~~~~~~~~p~~~~~~~-li~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 405 (831)
+|..++..++.. .||..-|.. +..++.+-.+--+++ .+|....+.-.. .......=+.......-.+..-+.+..
T Consensus 237 eA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~ 313 (700)
T KOG1156|consen 237 EAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRP 313 (700)
T ss_pred hHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHH
Confidence 999999999987 456555554 444443333333333 556555443111 100011111111111222333445555
Q ss_pred HHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH----hCC----------CCCChhhHH--HHHHHHHccCChhhH
Q 003315 406 FKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMK----DRQ----------IVPDVVNYT--TMICGYCLQGKLGDA 469 (831)
Q Consensus 406 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----------~~~~~~~~~--~li~~~~~~g~~~~A 469 (831)
..+.|+++ ++..+...|-.....+-..++.-.+. ..| -+|....|+ -++..+-+.|+++.|
T Consensus 314 ~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A 390 (700)
T KOG1156|consen 314 LLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVA 390 (700)
T ss_pred HhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHH
Confidence 56666543 22233333222111111111111111 110 134444444 345566777888888
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 003315 470 LDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGK 549 (831)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 549 (831)
...++......+. -+..|..-.+.+...|++++|..++++..+.. .+|...-.-...-..+.+++++|.++.......
T Consensus 391 ~~yId~AIdHTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~ 468 (700)
T KOG1156|consen 391 LEYIDLAIDHTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTRE 468 (700)
T ss_pred HHHHHHHhccCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhc
Confidence 8888877765321 23345555567777788888888888777654 445444445556666777777777776666554
Q ss_pred C
Q 003315 550 C 550 (831)
Q Consensus 550 ~ 550 (831)
+
T Consensus 469 ~ 469 (700)
T KOG1156|consen 469 G 469 (700)
T ss_pred c
Confidence 3
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-11 Score=114.65 Aligned_cols=272 Identities=14% Similarity=0.093 Sum_probs=165.5
Q ss_pred CCChHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHH
Q 003315 81 YLNTREVVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEA 160 (831)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 160 (831)
.++...+.++=+...++|++|...|..+.+.+. .+.++-.++...+-+.|..++|+.+-..+++. |+..++
T Consensus 34 ~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~------- 104 (389)
T COG2956 34 RLSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFE------- 104 (389)
T ss_pred hccHHHHhHHHHHhhcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchH-------
Confidence 345566666666777788888888888876532 25555667777777777788877777666554 322211
Q ss_pred HhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCh
Q 003315 161 LCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNE 240 (831)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 240 (831)
.-..+...|++-|+..|-+|.|..+|..+...+ ..-..+...++..|-..++|++|+++-+++.+.+..+..
T Consensus 105 -------qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~ 176 (389)
T COG2956 105 -------QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR 176 (389)
T ss_pred -------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch
Confidence 123456677777888888888888887777654 234556677777777777888888777777765533221
Q ss_pred ----hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 003315 241 ----YTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVV 316 (831)
Q Consensus 241 ----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 316 (831)
..|..|...+....+++.|...+.++.+.+ +..+..-..+.+.....|+++.|.+.++.+.+.+...-+.+...|
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 134455555555667777777777776653 223334444556666666666666666666666544445555666
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 317 IRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMT 372 (831)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 372 (831)
..+|...|+.++....+..+.+... ....-..+...-....-.+.|...+.+-+
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql 309 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQL 309 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 6666666666666666666665422 22233333333333444444544444433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=145.85 Aligned_cols=260 Identities=16% Similarity=0.123 Sum_probs=89.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcC-CCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRG-FVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKK 253 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (831)
.++..+.+.|++++|++++.+..... ++.+...+..+.......++++.|...++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 66888888999999999996654443 34466666667777778888999999999988765 3356677777766 688
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHhHHHHH
Q 003315 254 GSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEAD-IPLSAFAYTVVIRWFCDQNKLEKAECV 332 (831)
Q Consensus 254 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 332 (831)
+++++|.+++++..+. .++...+..++..+...++++++..+++.+.... .+.+...|..++..+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8999999988877665 3566667778888888899999988888877542 356777888888888888999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003315 333 LLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFF 412 (831)
Q Consensus 333 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 412 (831)
+++..+..+. |......++..+...|+.+++.++++...+.. +.|
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~--------------------------------- 213 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDD--------------------------------- 213 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTS---------------------------------
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCH---------------------------------
Confidence 9888887443 57778888888888888888888887776643 222
Q ss_pred cCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHH
Q 003315 413 LNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEM 476 (831)
Q Consensus 413 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 476 (831)
...+..+..++...|+.++|+.+|++..... +.|+.....+..++...|+.++|.++.+++
T Consensus 214 --~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 214 --PDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp --CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred --HHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 2333444555555555555555555544421 124444555555555555555555555444
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-14 Score=145.29 Aligned_cols=260 Identities=13% Similarity=0.057 Sum_probs=103.1
Q ss_pred HHHHhccCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCc
Q 003315 89 EKLYSLRKEPKIALSFFEQLKRSG-FSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGST 167 (831)
Q Consensus 89 ~~l~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (831)
..++...|+++.|++++....... .+.++..|..++.+....++++.|...+.+++..++.
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~------------------ 76 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA------------------ 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------------------
Confidence 556667788888888886554332 2446666766777777788888888888887766332
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcC-CCCChhhHHHH
Q 003315 168 LLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLG-LSLNEYTYVIV 246 (831)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l 246 (831)
++..+..++.. ...+++++|..++++..+.. ++...+...+..+.+.++++++..+++.+.... .+.++..|..+
T Consensus 77 -~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 152 (280)
T PF13429_consen 77 -NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLAL 152 (280)
T ss_dssp ---------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHH
T ss_pred -ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 33445566666 68888888888887766553 345556777788888888888888888876432 24566777788
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKL 326 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 326 (831)
...+.+.|+.++|++.++++++.. +.|......++..+...|+.+++.+++....+.. +.++..+..++.++...|+.
T Consensus 153 a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~ 230 (280)
T PF13429_consen 153 AEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRY 230 (280)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccc
Confidence 888888888888888888888763 2246677778888888888888888888877764 56667778888888888888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 327 EKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTS 373 (831)
Q Consensus 327 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 373 (831)
++|...|++..+..+. |......+..++.+.|+.++|.++.++...
T Consensus 231 ~~Al~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 231 EEALEYLEKALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHHHSTT--HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 8888888888876433 777777888888888888888888776543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.2e-12 Score=131.69 Aligned_cols=221 Identities=12% Similarity=0.052 Sum_probs=107.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCc-------chHHHHHHH
Q 003315 422 VDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDI-------ITYNVLAGA 494 (831)
Q Consensus 422 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~ 494 (831)
...+...|+++.|...++++.+.... ++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++..
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~ 238 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ 238 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 34445555566666665555544322 4444555555566666666666666665554432111 111222222
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhcCCHHHHHHHH
Q 003315 495 FAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLF 574 (831)
Q Consensus 495 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 574 (831)
.....+.+...++++.+.+. .+.++.....+...+...|+.++|.+.+++..+..++.--.++.+....++.+++++..
T Consensus 239 ~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~ 317 (398)
T PRK10747 239 AMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVL 317 (398)
T ss_pred HHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHH
Confidence 22233344444444444332 23455555556666666666666666666555543333222333333445555555555
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003315 575 MRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTP 654 (831)
Q Consensus 575 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 654 (831)
++..+..+. | ......++..+.+.|++++|.+.|+...+. .|
T Consensus 318 e~~lk~~P~-~-----------------------------------~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P 359 (398)
T PRK10747 318 RQQIKQHGD-T-----------------------------------PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RP 359 (398)
T ss_pred HHHHhhCCC-C-----------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 555544332 3 333444445555555555555555555543 34
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003315 655 HLVTYTMMIHGYCKINCLREARDVFNDM 682 (831)
Q Consensus 655 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m 682 (831)
+...+..+...+.+.|+.++|.+.+++-
T Consensus 360 ~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 360 DAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444445555555555555555555544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-11 Score=113.56 Aligned_cols=223 Identities=13% Similarity=0.061 Sum_probs=154.6
Q ss_pred HHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCh------hhHHHHHHHHHhcC
Q 003315 181 VSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNE------YTYVIVIKALCKKG 254 (831)
Q Consensus 181 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g 254 (831)
.-+++.++|++.|-.+.+.++. ...+-.++.+.|.+.|+.|.|+++.+.+.+. ||. .....|..=|...|
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhh
Confidence 3467899999999999987644 6777788999999999999999999998874 442 24456677788899
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHhHHH
Q 003315 255 SMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLS----AFAYTVVIRWFCDQNKLEKAE 330 (831)
Q Consensus 255 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~ 330 (831)
-++.|+++|..+.+.+ .--......|+..|-...+|++|++.-+++.+.+-.+. ...|..|...+....+++.|.
T Consensus 122 l~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 122 LLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 9999999999888754 33445677788888888888888888888877653332 224555556666667777888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003315 331 CVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDM 409 (831)
Q Consensus 331 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 409 (831)
.++.+..+.+.+ .+..--.+.+.+...|++++|.+.++...+.+..--..+...+..+|...|+.++....+..+.+.
T Consensus 201 ~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 201 ELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 888777776433 333344466777777888888877777777654433344444444455555555544444444443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-12 Score=132.35 Aligned_cols=287 Identities=14% Similarity=0.086 Sum_probs=141.2
Q ss_pred hhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChHHHHHHH
Q 003315 186 FDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGL--SLNEYTYVIVIKALCKKGSMQEAVEVF 263 (831)
Q Consensus 186 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 263 (831)
.++|+..|.++.... .....+...++.+|...+++++|+++|+.+.+... -.+...|.+.+..+-+ +-++..+
T Consensus 335 ~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 345555555533322 11224444455555555555555555555443210 0133344444433311 1111111
Q ss_pred -HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 003315 264 -LEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVV 342 (831)
Q Consensus 264 -~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 342 (831)
+++.+.. +..+.+|..+..+|.-+++.+.|++.|++.++.+ |-...+|+.+..-+....++|.|...|+..+.-.+.
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 1222211 2233455555555555555555555555555443 334455555555555555555555555555442111
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHH
Q 003315 343 PDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIV 422 (831)
Q Consensus 343 p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 422 (831)
+-..|..+..+|.++++++.|+-.|+...+.++. +.+....+...+.+.|+.++|+++++++...... |+..--.-+
T Consensus 488 -hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~ 564 (638)
T KOG1126|consen 488 -HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRA 564 (638)
T ss_pred -hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHH
Confidence 1122333445555555555555555555544322 3344444445555555555555555555544333 333333445
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCC
Q 003315 423 DSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKP 483 (831)
Q Consensus 423 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 483 (831)
..+...+++++|+..++++++. ++.+...+..+...|.+.|+.+.|+.-|.-+.+..+++
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 5566667777777777777764 23355566667777777777777777777776654443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-09 Score=111.58 Aligned_cols=515 Identities=13% Similarity=0.004 Sum_probs=267.7
Q ss_pred HHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HcCCChhhHHHHHHHHHHh-cCCC--chhHH----HHH
Q 003315 89 EKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRIL---CCCGWQKKLESMLLELVRK-KTDA--NFEAT----DLI 158 (831)
Q Consensus 89 ~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~-~~~~--~~~~~----~~~ 158 (831)
..|+...+++..+..-|..+..++.+.++..+.++-..+ .-.++.+++ .+...+.. ..+. ..++. -.+
T Consensus 234 ~~Lw~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm~~~ 311 (799)
T KOG4162|consen 234 PILWKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLMLLL 311 (799)
T ss_pred HHHhcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHHHHH
Confidence 345556677788888888777666666666665543322 223334443 22222222 1111 11111 122
Q ss_pred HHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 003315 159 EALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSL 238 (831)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 238 (831)
..++...+..++.+|..|.-+....|+++.+.+.|++....-+. ....|..+...+...|....|+.+++.-......|
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 33344455667788888888888888888888888887765433 56667888888888888888888887765432123
Q ss_pred -ChhhHHHHHHHHH-hcCChHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHhc----C-------ChhHHHHHHHHH
Q 003315 239 -NEYTYVIVIKALC-KKGSMQEAVEVFLEMEKA--GV--TPNAFAYSTCIEGLCMN----G-------MLDLGYELLLKW 301 (831)
Q Consensus 239 -~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~--~~--~p~~~~~~~l~~~~~~~----~-------~~~~a~~~~~~~ 301 (831)
++..+......|. +.|.+++++....++... +. .-....|..+.-+|... . .-.++++.+++.
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 3333333334444 346677777777766651 11 12334455554444421 1 123456667777
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh
Q 003315 302 EEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCG 381 (831)
Q Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 381 (831)
.+.+ +.|+.+...+.--|+..++++.|.+..++..+.+...+...|..|...+...+++.+|+.+.+.....-.. |..
T Consensus 471 v~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~ 548 (799)
T KOG4162|consen 471 VQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHV 548 (799)
T ss_pred HhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhh
Confidence 6665 44555555566667777778888888887777755557777777777777778888888777766543110 111
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHH
Q 003315 382 VLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDR--QIVPDVVNYTTMICG 459 (831)
Q Consensus 382 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~ 459 (831)
....-+..-..-++.++++.....++..-.. .... ...++-....+....+.-. .......++..+...
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~--~~~~-------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEA--EYGV-------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHh--hhhH-------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 1111111111233333333333322211000 0000 0000001111111111000 000011111111111
Q ss_pred HHccCChhhHHHHHHHHHHcCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHH
Q 003315 460 YCLQGKLGDALDLFKEMKEMGHKPDII-TYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEE 538 (831)
Q Consensus 460 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 538 (831)
....+. .+..-.. +....+.|... ++... ...+......+.+.+..++
T Consensus 620 ~a~~~~--~~~se~~-Lp~s~~~~~~~~~~~~~----------------------------~~lwllaa~~~~~~~~~~~ 668 (799)
T KOG4162|consen 620 VASQLK--SAGSELK-LPSSTVLPGPDSLWYLL----------------------------QKLWLLAADLFLLSGNDDE 668 (799)
T ss_pred HHhhhh--hcccccc-cCcccccCCCCchHHHH----------------------------HHHHHHHHHHHHhcCCchH
Confidence 100000 0000000 11111111111 00000 1122233344555566666
Q ss_pred HHHHHHHhhhCCCCC---hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHH--HHHHHH
Q 003315 539 AEAFLDGLKGKCLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALK--LFKTMI 613 (831)
Q Consensus 539 a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~ 613 (831)
|...+.+....++.. |...+..+...|..++|.+.|......++. ++.+...++..+.+.|+..-|.. ++..+.
T Consensus 669 a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dal 747 (799)
T KOG4162|consen 669 ARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDAL 747 (799)
T ss_pred HHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence 666665555555544 555556666667777777777776666554 56667777777777776666655 777777
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003315 614 TLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDK 650 (831)
Q Consensus 614 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 650 (831)
+.+ +.+...|-.++.++-+.|+.++|.+.|+.+.+.
T Consensus 748 r~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 748 RLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 765 456777777888888888888888888777654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-10 Score=106.32 Aligned_cols=157 Identities=10% Similarity=0.105 Sum_probs=97.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCC
Q 003315 635 EEMEQAQLVFNVLVDKGLTPHLV-TYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSP 713 (831)
Q Consensus 635 g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~ 713 (831)
..+..|.+.|+..-+.+..-|.. .-.++...+.-..++++.+..++.....-...|...++..-.-+.
T Consensus 337 eHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~a----------- 405 (557)
T KOG3785|consen 337 EHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLA----------- 405 (557)
T ss_pred HHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHH-----------
Confidence 34566777777666555444432 344566666666777888888877776545555555554433332
Q ss_pred chhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCH
Q 003315 714 DALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTY-TALLCGYLAKGDL 792 (831)
Q Consensus 714 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~-~~l~~~~~~~g~~ 792 (831)
.|++.+|.++|-.+....++-+......|.++|.++++++-|++++-++- .+.+..+. ..+..-|.+.+.+
T Consensus 406 -----tgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eF 477 (557)
T KOG3785|consen 406 -----TGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEF 477 (557)
T ss_pred -----hcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHH
Confidence 36678888887766544433333334677788888888888887776653 22233333 3445668888888
Q ss_pred HHHHHHHHHHHhCCCCCCHH
Q 003315 793 DRAIALVDEMSVKGIQGDDY 812 (831)
Q Consensus 793 ~~A~~~~~~~~~~g~~pd~~ 812 (831)
--|-+.|+++.. ++|+..
T Consensus 478 yyaaKAFd~lE~--lDP~pE 495 (557)
T KOG3785|consen 478 YYAAKAFDELEI--LDPTPE 495 (557)
T ss_pred HHHHHhhhHHHc--cCCCcc
Confidence 888888887776 444443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-07 Score=96.74 Aligned_cols=500 Identities=12% Similarity=0.088 Sum_probs=280.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003315 278 YSTCIEGLCMNGMLDLGYELLLKWEEA-DIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYC 356 (831)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 356 (831)
|...+..+.++|++......|...+.. .+.....+|...+......+-.+.+..++++.++- ++..-+..|..++
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~ 180 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLA 180 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHH
Confidence 333344444444444444444444432 11112234444444444444444555555554443 2222334444444
Q ss_pred hcCChHHHHHHHHHHHhCC------CCCCHhhHHHHHHHHHhcCChHH---HHHHHHHHHHCCCCcCHhhHHHHHHHHHh
Q 003315 357 KFGKINKALLLHHEMTSKG------IKTNCGVLSVILKGLCQKGMASA---TIKQFLEFKDMGFFLNKVCYDVIVDSLCK 427 (831)
Q Consensus 357 ~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 427 (831)
+.+++++|-+.+...+... .+.+...|..+....++..+.-. ...+++.....-...-...|+.|.+-|.+
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIR 260 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHH
Confidence 5555555554444443221 11222233333333222222111 11222222221111123456777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----------------cC------ChhhHHHHHHHHHHcCC----
Q 003315 428 LGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCL----------------QG------KLGDALDLFKEMKEMGH---- 481 (831)
Q Consensus 428 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----------------~g------~~~~A~~~~~~~~~~~~---- 481 (831)
.|.+++|.++|++....- .+..-|+.+...|+. .| +++-.+..|+.+....+
T Consensus 261 ~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred hhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 777777777777655431 122223333333221 11 22333444444443321
Q ss_pred -------CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 003315 482 -------KPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEP------NFVTHNMIIEGLCMGGRVEEAEAFLDGLKG 548 (831)
Q Consensus 482 -------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 548 (831)
..++..|..-+.. ..|+..+....+.++++. +.| -...+..+.+.|...|+++.|..+|++..+
T Consensus 339 sVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 1133444433332 356778888888888764 222 234677888889999999999999999887
Q ss_pred CCCCC-------hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----------------cccHHHHHHHHHhcCCHHH
Q 003315 549 KCLEN-------YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVK-----------------KSSCNKLITNLLILRDNNN 604 (831)
Q Consensus 549 ~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------------~~~~~~l~~~~~~~~~~~~ 604 (831)
..-.. |-.....-.+..+++.|+.+.+++....-.|. ...|...+...-..|-++.
T Consensus 416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 75544 44444445567789999999888765422211 1123444444455688888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHH-c--CCHHHHHHHHH
Q 003315 605 ALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHL-VTYTMMIHGYCK-I--NCLREARDVFN 680 (831)
Q Consensus 605 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~-~--g~~~~A~~~~~ 680 (831)
...++++++...+.....+.| ..-.+-...-++++.+++++-+..=..|+. ..|+..+.-+.+ - -.++.|..+|+
T Consensus 496 tk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 496 TKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 889999998876543333322 223344556678888888776665334554 467777666553 2 36799999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChH
Q 003315 681 DMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDV--ISYTVLIAKLCNTQNLE 758 (831)
Q Consensus 681 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~ 758 (831)
+.++ |++|...-+..++-+-.. . ..|-...|..++++... ++++.. ..||..|.--...=-+.
T Consensus 575 qaL~-~Cpp~~aKtiyLlYA~lE--E-----------e~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~ 639 (835)
T KOG2047|consen 575 QALD-GCPPEHAKTIYLLYAKLE--E-----------EHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVP 639 (835)
T ss_pred HHHh-cCCHHHHHHHHHHHHHHH--H-----------HhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCc
Confidence 9998 788876665555544332 1 34557788999998663 445544 47888887655555567
Q ss_pred HHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 759 DGITVFNEISDRGLEPDTVT---YTALLCGYLAKGDLDRAIALVDEMSV 804 (831)
Q Consensus 759 ~A~~~~~~~~~~g~~pd~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 804 (831)
...++++++++. -||... +--....=.+.|..+.|+.++.-..+
T Consensus 640 ~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 640 RTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred ccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 788999999984 666544 33444556688999999999887766
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.9e-09 Score=98.06 Aligned_cols=411 Identities=12% Similarity=0.079 Sum_probs=207.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 003315 212 MNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGML 291 (831)
Q Consensus 212 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 291 (831)
+.-+....++..|..+++--...+-.....+-..+...+.+.|++++|+..+.-+.... .++...+..|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 34444555666666665554432211111222233344445666666666665555432 44445555555555555555
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003315 292 DLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEM 371 (831)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~ 371 (831)
.+|..+-.+. +.++-.-..+...-.+.++-++-....+.+.. ...--.+|.++..-.-.+.+|+++++..
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544331 22222222333333344444444444333332 1122233333333344455555555555
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 003315 372 TSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDV-IVDSLCKLGEVEKAMILFKEMKDRQIVPDV 450 (831)
Q Consensus 372 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 450 (831)
+..+ |+....|. +.-+|.+..-++-+.++++-.... ++.++
T Consensus 178 L~dn-------------------------------------~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdSt 219 (557)
T KOG3785|consen 178 LQDN-------------------------------------PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDST 219 (557)
T ss_pred HhcC-------------------------------------hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcH
Confidence 4432 11222222 223444555556666666554432 22233
Q ss_pred hhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003315 451 VNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQY-----GAVQKAFDLLNYMKRHGLEPNFVTHNM 525 (831)
Q Consensus 451 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~ 525 (831)
...|.......+.=+-..|..-.+++.+.+-. . | ..+.-+++. .+-+.|++++--+.+. .|... -.
T Consensus 220 iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~---~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEAR--lN 290 (557)
T KOG3785|consen 220 IAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E---Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEAR--LN 290 (557)
T ss_pred HHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c---c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHhh--hh
Confidence 33443333333322222333334444333211 1 1 122222222 2446677776666543 33322 22
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHH
Q 003315 526 IIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKT-------GHTKEAFQLFMRLSNQGVLVK-KSSCNKLITNLL 597 (831)
Q Consensus 526 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-------g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 597 (831)
++-.|.+.+++.+|..+.+.+....|..|-.-+..++.. .+.+-|.+.|+-.-+.+..-| .....++...++
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF 370 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF 370 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence 333577788888888777665544443332222222222 245566666665555544333 334556666777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHH-HHHHHHHHHcCCHHHHH
Q 003315 598 ILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTY-TMMIHGYCKINCLREAR 676 (831)
Q Consensus 598 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~ 676 (831)
-..++++.+..+..+...-...|...+| +..+++..|.+.+|+++|-.+....++ |..+| ..|.++|.++|+++-|.
T Consensus 371 L~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHH
Confidence 7788888888888777665444554443 677888889999999998877655444 55555 45567888999998888
Q ss_pred HHHHHH
Q 003315 677 DVFNDM 682 (831)
Q Consensus 677 ~~~~~m 682 (831)
+++-++
T Consensus 449 ~~~lk~ 454 (557)
T KOG3785|consen 449 DMMLKT 454 (557)
T ss_pred HHHHhc
Confidence 776655
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-08 Score=107.03 Aligned_cols=129 Identities=13% Similarity=0.066 Sum_probs=108.8
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003315 554 YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQ 633 (831)
Q Consensus 554 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 633 (831)
|......+.+.++.++|...+.++....+. ....|...+..+...|..++|.+.|..+...+ +.+..+..++..++.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 445667778889999999999888877543 66777778888889999999999999998765 3456678889999999
Q ss_pred cCCHHHHHH--HHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003315 634 AEEMEQAQL--VFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQR 685 (831)
Q Consensus 634 ~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 685 (831)
.|+...|.. ++..+++.++. +...|..+...+-+.|+.++|.+-|....+.
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 999888887 99999998765 8899999999999999999999999987753
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-09 Score=103.04 Aligned_cols=287 Identities=10% Similarity=-0.010 Sum_probs=169.1
Q ss_pred HcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhh
Q 003315 128 CCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICS 207 (831)
Q Consensus 128 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 207 (831)
...|+|.+|..++.++-+..+. ....|...+.+--..|+.+.|-..+.++.+...+++...
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~-------------------p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v 155 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQ-------------------PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAV 155 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcc-------------------hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHH
Confidence 3477888887777764443221 223555666666778888888888888887755666777
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-------HHHH
Q 003315 208 CNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAF-------AYST 280 (831)
Q Consensus 208 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------~~~~ 280 (831)
.....+.+...|+++.|..-.+++.+.+ +.++.......+.|.+.|++.....++.++.+.|.-.+.. +|..
T Consensus 156 ~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~g 234 (400)
T COG3071 156 ELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEG 234 (400)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 7777788888888888888888887765 4566777778888888888888888888888877554443 3444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003315 281 CIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGK 360 (831)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 360 (831)
+++-....+..+.-....+..... ...++..-..++.-+.++|+.++|.++.++..+++.+|.. ...-.+.+.++
T Consensus 235 lL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d 309 (400)
T COG3071 235 LLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGD 309 (400)
T ss_pred HHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCC
Confidence 444443333333322333332222 2334555556666666666666666666666665544431 11122334455
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003315 361 INKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKE 440 (831)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 440 (831)
.+.-++..++-.+.... ++..+.+|...|.+.+.+.+|...|+.
T Consensus 310 ~~~l~k~~e~~l~~h~~------------------------------------~p~L~~tLG~L~~k~~~w~kA~~~lea 353 (400)
T COG3071 310 PEPLIKAAEKWLKQHPE------------------------------------DPLLLSTLGRLALKNKLWGKASEALEA 353 (400)
T ss_pred chHHHHHHHHHHHhCCC------------------------------------ChhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55444444444433111 224444555555555555555555554
Q ss_pred HHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHH
Q 003315 441 MKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMK 477 (831)
Q Consensus 441 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 477 (831)
..+. .|+..+|+-+..++.+.|+..+|.++.++..
T Consensus 354 Al~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 354 ALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4432 3455555555555555555555555555544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.4e-10 Score=107.44 Aligned_cols=289 Identities=11% Similarity=0.055 Sum_probs=153.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHH
Q 003315 253 KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECV 332 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 332 (831)
.|+|.+|++...+..+.+ +.....|..-+.+-.+.||.+.+-.++.++.+.--.++........+.....|++..|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 577777777777766665 2233455555666667777777777777777663345556666677777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003315 333 LLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFF 412 (831)
Q Consensus 333 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 412 (831)
++++.+.++. +........++|.+.|++.....++..+.+.+.-.+...-.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~---------------------------- 226 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR---------------------------- 226 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------
Confidence 7777776554 55666777777888888888888887777776554432110
Q ss_pred cCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHH
Q 003315 413 LNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLA 492 (831)
Q Consensus 413 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 492 (831)
....+|+.+++-....+..+.-..++++...+ ..-++..-..++.-+.+.|+.++|.++.++..+.+..|. ....
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~ 301 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRL 301 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHH
Confidence 01122333333333333333333344443321 112333444444555555555555555555555443333 1111
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC--hHHHHHHHHhcCCHHHH
Q 003315 493 GAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN--YSAMINGYCKTGHTKEA 570 (831)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A 570 (831)
-.+.+.++...-++..++-.+. .+.++..+..+...|.+.+.+.+|...|+...+..++. |+.+...+.+.|+..+|
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 1233444444444444444332 13333444455555555555555555555444433322 44444444444544444
Q ss_pred HHHHHHH
Q 003315 571 FQLFMRL 577 (831)
Q Consensus 571 ~~~~~~~ 577 (831)
.++.++.
T Consensus 381 ~~~r~e~ 387 (400)
T COG3071 381 EQVRREA 387 (400)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-08 Score=105.08 Aligned_cols=600 Identities=14% Similarity=0.060 Sum_probs=363.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG 254 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (831)
..++ +...+++...+...+++++.. +-...+....+-.+...|+.++|......-...+ ..+.+.|..+.-.+....
T Consensus 13 ~~lk-~yE~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 13 RALK-CYETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHH-HHHHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhh
Confidence 3444 446788999999999988854 3366677666667778899999998888777644 456778888888888889
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHH
Q 003315 255 SMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLL 334 (831)
Q Consensus 255 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 334 (831)
++++|++.|+.++..+ +.|...+.-+.-.-.+.++++.....-.+..+.. +.....|..++.++.-.|++..|..+++
T Consensus 90 ~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILE 167 (700)
T ss_pred hHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998875 5567777777777778888888877777777663 5566778888888889999999999999
Q ss_pred HHHHCC-CCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 335 HMEKQG-VVPDVYAYSALI------SGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFK 407 (831)
Q Consensus 335 ~~~~~~-~~p~~~~~~~li------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 407 (831)
+..+.. -.|+...+.... ....+.|..++|++.+..-... +.........-...+.+.++.++|..++..++
T Consensus 168 ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 168 EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 888764 245555554432 3455678888888777654332 22122233445566778899999999999988
Q ss_pred HCCCCcCHhhHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCChhhHHHH-HHHHHccCChhhHHHHHHHHHHcCCCCCc
Q 003315 408 DMGFFLNKVCYDVIVDSLCKLGEVEKAM-ILFKEMKDRQIVPDVVNYTTM-ICGYCLQGKLGDALDLFKEMKEMGHKPDI 485 (831)
Q Consensus 408 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 485 (831)
..++. +...|..+..++.+..+.-+++ .+|....+. .|....-..+ +.......-.+..-.++..+.+.|+++-
T Consensus 247 ~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v- 322 (700)
T KOG1156|consen 247 ERNPD-NLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV- 322 (700)
T ss_pred hhCch-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch-
Confidence 87532 3444445555554343444444 666655543 1111111111 1111112223334456666777776542
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHH----HCC----------CCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 003315 486 ITYNVLAGAFAQYGAVQKAFDLLNYMK----RHG----------LEPNF--VTHNMIIEGLCMGGRVEEAEAFLDGLKGK 549 (831)
Q Consensus 486 ~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~----------~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 549 (831)
+..+...|-.....+-..++.-.+. ..| -+|.. .++..++..+-+.|+++.|..+++.....
T Consensus 323 --f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH 400 (700)
T KOG1156|consen 323 --FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH 400 (700)
T ss_pred --hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 3333333322221111111111111 110 13443 34556677788999999999999999988
Q ss_pred CCCC---hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----
Q 003315 550 CLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKS---- 622 (831)
Q Consensus 550 ~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---- 622 (831)
+|.. |-.-...+...|.+++|...+++..+.+.. |..+-...+.-..+.++.++|.++.....+.|. +..
T Consensus 401 TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a-DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~ 477 (700)
T KOG1156|consen 401 TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA-DRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLA 477 (700)
T ss_pred CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch-hHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHH
Confidence 8876 444467888999999999999999887643 666555777777888999999999998887764 221
Q ss_pred ----HHHH--HHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHhHHH----------HHHHHHHHc---C----CHHH
Q 003315 623 ----MYDK--LIGALCQAEEMEQAQLVFNVLVDK-----GLTPHLVTYT----------MMIHGYCKI---N----CLRE 674 (831)
Q Consensus 623 ----~~~~--l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~----------~l~~~~~~~---g----~~~~ 674 (831)
+|-. -+.+|.++|++..|.+-|..+.+. .-+.|-.+|. -|+...-.. - -...
T Consensus 478 ~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~ 557 (700)
T KOG1156|consen 478 EMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAAKG 557 (700)
T ss_pred HhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 2222 245677888888887766655432 1122333331 121111100 0 0133
Q ss_pred HHHHHHHHHHCCCCCCHHHHH-HHHHHhhccccCCCCCCCchh--hcccCHHHHHHHHHHHH---------HcCCC--CC
Q 003315 675 ARDVFNDMKQRGITPDVVTYT-VLFDAHSKINLKGSSSSPDAL--QCKEDVVDASVFWNEMK---------EMGIR--PD 740 (831)
Q Consensus 675 A~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~m~---------~~~~~--p~ 740 (831)
|+++|=+|.+. |+..+-. .-+...+ .+.-.. ..+.+-.+|..--+.+. +.|.+ ||
T Consensus 558 Ai~iYl~l~d~---p~~~~~~~~~~~~ms--------~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~~s~~~~~~~~d 626 (700)
T KOG1156|consen 558 AIEIYLRLHDS---PNMYTNKADEIEKMS--------DEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEAKSQSGKPVDID 626 (700)
T ss_pred HHHHHHHHhcC---cccccccchhhhhcc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Confidence 45555555542 2110000 0000000 000000 01111122222222211 12222 44
Q ss_pred HHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 741 VISYTVLIAKLCNTQN-LEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSV 804 (831)
Q Consensus 741 ~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 804 (831)
.. .+...+.+..+ +++|.+.+...... .+.+..+|.--...|.+.|++.-+.+.+++...
T Consensus 627 ~~---~~gekL~~t~~Pl~ea~kf~~~l~~~-~~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~ 687 (700)
T KOG1156|consen 627 ED---PFGEKLLKTEDPLEEARKFLPNLQHK-GKEKGETYILSFELYYRKGKFLLALACLNNAEG 687 (700)
T ss_pred Cc---chhhhHhhcCChHHHHHHHHHHHHHh-cccchhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 44 34455566655 57799988888876 566777877777889999999999999888765
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.8e-07 Score=97.96 Aligned_cols=81 Identities=12% Similarity=0.061 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003315 740 DVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLER 819 (831)
Q Consensus 740 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~ 819 (831)
.+..|+.+..+-.+.|...+|++-|-++- |+..|...+....+.|++++-.+++...+++.-+|...+ .|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHH
Confidence 34588889999999999999988776653 788888999999999999999999988888777777653 5778
Q ss_pred HHHhccccc
Q 003315 820 GIEKARILQ 828 (831)
Q Consensus 820 ~~~~~~~~~ 828 (831)
+|.|.+|+.
T Consensus 1175 AyAkt~rl~ 1183 (1666)
T KOG0985|consen 1175 AYAKTNRLT 1183 (1666)
T ss_pred HHHHhchHH
Confidence 888888763
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.6e-09 Score=99.90 Aligned_cols=274 Identities=15% Similarity=0.009 Sum_probs=204.5
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHH---HHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 003315 516 LEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSA---MINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKL 592 (831)
Q Consensus 516 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 592 (831)
++.|......+.+++...|+.++|+..|++....+|.+... ....+.+.|++++...+...+...... ...-|.--
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY-TASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc-chhhhhhh
Confidence 56677777888888888888888888888887777766333 344455677777777776666544211 33334444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH
Q 003315 593 ITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCL 672 (831)
Q Consensus 593 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 672 (831)
+..++..+++..|+.+-++.++.+ +.+...+..-+..+...|+.++|.-.|..+....+. +...|.-|+..|...|++
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchH
Confidence 556677788899999988888765 344555666677888999999999999998876333 889999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHH-HHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Q 003315 673 REARDVFNDMKQRGITPDVVTYTVL-FDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVI-SYTVLIAK 750 (831)
Q Consensus 673 ~~A~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~ 750 (831)
.+|.-+-+...+. +..+..+...+ -..|.. ....-++|.+++++-.. +.|+-. ..+.+...
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~--------------dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL 447 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFP--------------DPRMREKAKKFAEKSLK--INPIYTPAVNLIAEL 447 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeecc--------------CchhHHHHHHHHHhhhc--cCCccHHHHHHHHHH
Confidence 9998877766553 33344454444 133432 12345788888887654 356553 67888888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 003315 751 LCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYT 813 (831)
Q Consensus 751 ~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~ 813 (831)
+...|+.++++.++++... ..||....+.|+..+...+.+.+|++.|...++ ++|.+..
T Consensus 448 ~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~~ 506 (564)
T KOG1174|consen 448 CQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSKR 506 (564)
T ss_pred HHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccchH
Confidence 9999999999999999986 688999999999999999999999999999988 7887754
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.9e-11 Score=129.61 Aligned_cols=217 Identities=13% Similarity=0.069 Sum_probs=167.7
Q ss_pred ChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHH---------cCChhHHHHHHHHHHHcCCC
Q 003315 132 WQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVS---------VGMFDEGIDILFQINRRGFV 202 (831)
Q Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~ 202 (831)
..++|...+.+.++.+|. ++.++..++.+|.. .+++++|...++++++.++.
T Consensus 276 ~~~~A~~~~~~Al~ldP~-------------------~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~ 336 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-------------------SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN 336 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-------------------cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC
Confidence 356788888888887554 34566666665542 34589999999999999855
Q ss_pred cChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHH
Q 003315 203 WSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNA-FAYSTC 281 (831)
Q Consensus 203 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l 281 (831)
+..++..+..++...|++++|...|++.++.+ |.+...+..+...+...|++++|+..++++.+.+ |+. ..+..+
T Consensus 337 -~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~ 412 (553)
T PRK12370 337 -NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITK 412 (553)
T ss_pred -CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHH
Confidence 88888889999999999999999999999875 4567788889999999999999999999999874 443 333444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003315 282 IEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKI 361 (831)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 361 (831)
+..+...|++++|...++++.+...+.++..+..+...+...|++++|...++++...... +....+.+...|+..|
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g-- 489 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS-- 489 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--
Confidence 5557778999999999999887653445667888899999999999999999998765222 4445566667777777
Q ss_pred HHHHHHHHHHHhC
Q 003315 362 NKALLLHHEMTSK 374 (831)
Q Consensus 362 ~~A~~~~~~~~~~ 374 (831)
++|...++.+.+.
T Consensus 490 ~~a~~~l~~ll~~ 502 (553)
T PRK12370 490 ERALPTIREFLES 502 (553)
T ss_pred HHHHHHHHHHHHH
Confidence 4777777776653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.9e-08 Score=101.70 Aligned_cols=528 Identities=15% Similarity=0.150 Sum_probs=293.1
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHc--------CC-CcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRR--------GF-VWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLN 239 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 239 (831)
+..+|..+++.|++.++++-|.-.+-.|... .. .++ ..-....-.....|..++|+.+|.+-.+
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR------ 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR------ 828 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH------
Confidence 4468889999999998888887666544321 11 121 2333344455678999999999988765
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH----------HHCCC---
Q 003315 240 EYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKW----------EEADI--- 306 (831)
Q Consensus 240 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~----------~~~~~--- 306 (831)
|..|-+.|...|.+++|+++-+.--.. .=..||.....-+...+|.+.|++.|++. +..+.
T Consensus 829 ---~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 829 ---YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ---HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 345556778889999999987653222 23346777777777888888888888652 22110
Q ss_pred ------CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 003315 307 ------PLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNC 380 (831)
Q Consensus 307 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 380 (831)
..|...|.-....+-..|+++.|+.++..... |..+....|-+|+.++|-.+-++- -|.
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~ 967 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDK 967 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccH
Confidence 11233344444444456777777777766553 566777788889999988876653 255
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCC--------CcCHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCCh
Q 003315 381 GVLSVILKGLCQKGMASATIKQFLEFKDMGF--------FLNKVCYDVIVDSLCKL--GEVEKAMILFKEMKDRQIVPDV 450 (831)
Q Consensus 381 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~ 450 (831)
.....+.+.|...|++.+|+..|.......- ..+.. |.+.+... .+.-.|-+.|++...
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~----L~nlal~s~~~d~v~aArYyEe~g~------- 1036 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDR----LANLALMSGGSDLVSAARYYEELGG------- 1036 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH----HHHHHhhcCchhHHHHHHHHHHcch-------
Confidence 6677888889999999999988876543210 01111 11111111 223334444444321
Q ss_pred hhHHHHHHHHHccCChhhHHHHHHH--------HHHc--CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003315 451 VNYTTMICGYCLQGKLGDALDLFKE--------MKEM--GHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNF 520 (831)
Q Consensus 451 ~~~~~li~~~~~~g~~~~A~~~~~~--------~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 520 (831)
-....+..|-+.|.+.+|+++--+ ++.. ....|+...+.-.+-++...++++|..++....+.
T Consensus 1037 -~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~------ 1109 (1416)
T KOG3617|consen 1037 -YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF------ 1109 (1416)
T ss_pred -hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH------
Confidence 112233457777887777765322 1222 23345666677777778888888888887766542
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhC---CCCC------hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHH
Q 003315 521 VTHNMIIEGLCMGGRVEEAEAFLDGLKGK---CLEN------YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNK 591 (831)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 591 (831)
...+ .+|+..++.-.+++-+.|... .++. ...+...+.++|.+..|-+-|.++-.. ..
T Consensus 1110 ---~~Al-qlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~ 1176 (1416)
T KOG3617|consen 1110 ---SGAL-QLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LS 1176 (1416)
T ss_pred ---HHHH-HHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HH
Confidence 2222 223333333333333333211 1111 455677788888888887766543211 23
Q ss_pred HHHHHHhcCCHHHHH---------HH----HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 003315 592 LITNLLILRDNNNAL---------KL----FKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVT 658 (831)
Q Consensus 592 l~~~~~~~~~~~~a~---------~~----~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 658 (831)
.++++.+.|+.++.. ++ -..+...++..++.+...++.-|.+..-++---.+++...+- .+..
T Consensus 1177 AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqi----Eiee 1252 (1416)
T KOG3617|consen 1177 AMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQI----EIEE 1252 (1416)
T ss_pred HHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHh----hHHH
Confidence 455666666655421 01 122233455666666666666666655555444444444332 2222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccccCCCCCCCchh-hcccCHHHHHHHHHHHHHcC
Q 003315 659 YTMMIHGYCKINCLREARDVFNDMKQRGITPDVV-TYTVLFDAHSKINLKGSSSSPDAL-QCKEDVVDASVFWNEMKEMG 736 (831)
Q Consensus 659 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~m~~~~ 736 (831)
|..+-.+ .|-.++|..-+.+...++ +.. .++.|-.-...... ..... .-+++..+.+.-.+.|.+..
T Consensus 1253 ~q~ydKa---~gAl~eA~kCl~ka~~k~---~~~t~l~~Lq~~~a~vk~-----~l~~~q~~~eD~~~~i~qc~~lleep 1321 (1416)
T KOG3617|consen 1253 LQTYDKA---MGALEEAAKCLLKAEQKN---MSTTGLDALQEDLAKVKV-----QLRKLQIMKEDAADGIRQCTTLLEEP 1321 (1416)
T ss_pred HhhhhHH---hHHHHHHHHHHHHHHhhc---chHHHHHHHHHHHHHHHH-----HHHHHHHhhhhHHHHHHHHHHHhhCc
Confidence 2222222 234455555555554332 111 12221111110000 00000 01345555566666666555
Q ss_pred CCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003315 737 IRPDV----ISYTVLIAKLCNTQNLEDGITVFNEISDR 770 (831)
Q Consensus 737 ~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 770 (831)
..||+ ..|..+|..+....++..|...+++|..+
T Consensus 1322 ~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1322 ILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred CCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 44443 36777888888888888888888888765
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.9e-11 Score=130.05 Aligned_cols=251 Identities=12% Similarity=0.084 Sum_probs=186.4
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---------CCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCC
Q 003315 96 KEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCC---------CGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGS 166 (831)
Q Consensus 96 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (831)
++.+.|+.+|+++...++. ++..|..++.++.. .++.++|...+.++++.+|.
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~----------------- 336 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN----------------- 336 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-----------------
Confidence 4567899999999866433 56677777665442 23478899999999988655
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
++.++..++..+...|++++|+..|+++++.++. +..++..+..++...|++++|...+++..+.. |.++..+..+
T Consensus 337 --~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~ 412 (553)
T PRK12370 337 --NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITK 412 (553)
T ss_pred --CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHH
Confidence 6678889999999999999999999999999854 77788899999999999999999999999865 2233344445
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKL 326 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 326 (831)
+..+...|++++|+..++++.+...+.+...+..+..++...|++++|...++++.... +.+....+.+...|+..|
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g-- 489 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS-- 489 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--
Confidence 55577789999999999998875422245567778888999999999999999976653 445556677777788888
Q ss_pred hHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 327 EKAECVLLHMEKQG-VVPDVYAYSALISGYCKFGKINKALLLHHEMTSK 374 (831)
Q Consensus 327 ~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 374 (831)
++|...++.+.+.. ..+....+ +-..|.-.|+-+.+..+ +++.+.
T Consensus 490 ~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 490 ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 48888787776531 11111112 44445566777777666 666654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.4e-07 Score=96.24 Aligned_cols=125 Identities=12% Similarity=0.055 Sum_probs=85.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChh-----hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003315 208 CNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEY-----TYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCI 282 (831)
Q Consensus 208 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 282 (831)
+..+.+.+.+.|-...|++.|.++... +..+. .-..++ .|.-.-.++.+++.++.|+..++..|..+...+.
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DI--KR~vVhth~L~pEwLv-~yFg~lsve~s~eclkaml~~NirqNlQi~VQva 685 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDI--KRVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVA 685 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHH--HHHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 566778888888888888777765531 11111 011222 2334456788888999998888777777777666
Q ss_pred HHHHhcCChhHHHHHHHHHHHC-----------CCCCChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 003315 283 EGLCMNGMLDLGYELLLKWEEA-----------DIPLSAFAYTVVIRWFCDQNKLEKAECVLLH 335 (831)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 335 (831)
.-|+.+=-.+...++|+..... ++..|+.+....|.+.|+.|++.+.+++.++
T Consensus 686 tky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 686 TKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 6666665556666776665542 3466788888899999999999988887655
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.9e-09 Score=104.00 Aligned_cols=169 Identities=10% Similarity=0.153 Sum_probs=110.7
Q ss_pred CCCHHHHHHHHHHhhhCCCCC-hHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 003315 533 GGRVEEAEAFLDGLKGKCLEN-YSAMINGYC--KTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLF 609 (831)
Q Consensus 533 ~g~~~~a~~~~~~~~~~~~~~-~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 609 (831)
.+.-+.+.++...+....|.. +..++.... +...+.++.+++....+..+.-...+...+++.....|+++.|.+++
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 344455555555555555444 333332222 22356777777777776655544556667777888889999999988
Q ss_pred H--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhHHHHHHH----HHHHcCCHHHH
Q 003315 610 K--------TMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDK--GLTPHLVTYTMMIH----GYCKINCLREA 675 (831)
Q Consensus 610 ~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~----~~~~~g~~~~A 675 (831)
. .+.+.+..| .+...+...+.+.++.+.|..+++++++. ...+......+++. .-.+.|+.++|
T Consensus 400 ~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 8 444444444 44455677788888888888888887752 12233344444443 33477999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 003315 676 RDVFNDMKQRGITPDVVTYTVLFDAHSKI 704 (831)
Q Consensus 676 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 704 (831)
..+++++.+. -.+|..+..-++.+++..
T Consensus 478 ~s~leel~k~-n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 478 SSLLEELVKF-NPNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHHHHHHHh-CCchHHHHHHHHHHHHhc
Confidence 9999999985 356888888899998873
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.9e-07 Score=99.03 Aligned_cols=245 Identities=13% Similarity=-0.023 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 003315 432 EKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYM 511 (831)
Q Consensus 432 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 511 (831)
..|+..++...+..- .+...|+.|.-. ...|++.-|...|-+-....+. ...+|..+.-.+.++.+++.|...|...
T Consensus 800 ~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhheeccceeEEecccHHHhhHHHHhh
Confidence 356666665544321 145555555433 4446666666666655544332 5556666666667777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC-----CC---hHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 003315 512 KRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCL-----EN---YSAMINGYCKTGHTKEAFQLFMRLSNQ--- 580 (831)
Q Consensus 512 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 580 (831)
.... |.+...+..........|+.-++..+|..-...+. .. |-.-......+|++++-+..-+++...
T Consensus 877 qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 877 QSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred hhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 6542 33333333333333445666666666654221111 11 222222233445554444433333211
Q ss_pred ------CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHH
Q 003315 581 ------GVLVKKSSCNKLITNLLILRDNNNALKLFKTMITL-NAEPSKSMYD----KLIGALCQAEEMEQAQLVFNVLVD 649 (831)
Q Consensus 581 ------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~ 649 (831)
+.+-+...|...+...-+++.+..|.+...+.+.. ..+-+...|+ .+...++..|+++.|..-+.....
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~ 1035 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM 1035 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch
Confidence 11224445555555555556666655555444321 0112333333 234445556666655544332211
Q ss_pred CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003315 650 KGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQ 684 (831)
Q Consensus 650 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 684 (831)
. .+...-..-+.. .-.|+++++.+.|++...
T Consensus 1036 e---vdEdi~gt~l~l-Ffkndf~~sl~~fe~aLs 1066 (1238)
T KOG1127|consen 1036 E---VDEDIRGTDLTL-FFKNDFFSSLEFFEQALS 1066 (1238)
T ss_pred h---HHHHHhhhhHHH-HHHhHHHHHHHHHHHHhh
Confidence 0 011111111111 335677777777777764
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-07 Score=101.34 Aligned_cols=562 Identities=11% Similarity=-0.011 Sum_probs=319.9
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC--hhhHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLN--EYTYVIV 246 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l 246 (831)
...+|..|+..|...-+...|...|+++-+.+.. +..+...+...|++..++++|..+.-...+.. +.- ...|.-.
T Consensus 491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~r 568 (1238)
T KOG1127|consen 491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQR 568 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhc
Confidence 3457888999998888888999999999888744 88888888999999999999988843333221 111 1233334
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKL 326 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 326 (831)
.-.|.+.++...|+.-|+...... +.|...|..+..+|...|++..|.++|.++...+ |.+.....-..-..+..|++
T Consensus 569 G~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 569 GPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhH
Confidence 455778888999999999888764 4577789999999999999999999998888765 44555555566677888999
Q ss_pred hHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-------CCCCCCHhhHHHHHHHHHhc
Q 003315 327 EKAECVLLHMEKQG------VVPDVYAYSALISGYCKFGKINKALLLHHEMTS-------KGIKTNCGVLSVILKGLCQK 393 (831)
Q Consensus 327 ~~A~~~~~~~~~~~------~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~ 393 (831)
.+|...+....... -..-..++..+...+.-.|-..+|.++++..++ .....+...+..+..+
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asda---- 722 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDA---- 722 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH----
Confidence 99999888876531 111222333333334444444455555444332 1111122222222222
Q ss_pred CChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCH---H---HHHHHHHHHHhCCCCCChhhHHHHHHHHHc----c
Q 003315 394 GMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEV---E---KAMILFKEMKDRQIVPDVVNYTTMICGYCL----Q 463 (831)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 463 (831)
..+|-+.. .. .|+......+..-....+.. | -+.+.+-.-.+ ...+..+|..++..|.+ .
T Consensus 723 ------c~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l 792 (1238)
T KOG1127|consen 723 ------CYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLL 792 (1238)
T ss_pred ------HHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHc
Confidence 12222222 11 22332222222212222221 1 11111111111 11234455555544433 1
Q ss_pred ----CChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 003315 464 ----GKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEA 539 (831)
Q Consensus 464 ----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 539 (831)
.+...|+..+.+..+..- -+..+|+ .+......|++.-+...|-+-.... +....+|..+...+.+..+++.|
T Consensus 793 ~et~~~~~~Ai~c~KkaV~L~a-nn~~~Wn-aLGVlsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 793 GETMKDACTAIRCCKKAVSLCA-NNEGLWN-ALGVLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred CCcchhHHHHHHHHHHHHHHhh-ccHHHHH-HHHHhhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHh
Confidence 223467788887766432 2444555 4445566677777766666655543 55666777777778889999999
Q ss_pred HHHHHHhhhCCCCChHH-HHHHH--HhcCCHHHHHHHHHHH--Hh--CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 003315 540 EAFLDGLKGKCLENYSA-MINGY--CKTGHTKEAFQLFMRL--SN--QGVLVKKSSCNKLITNLLILRDNNNALKLFKTM 612 (831)
Q Consensus 540 ~~~~~~~~~~~~~~~~~-l~~~~--~~~g~~~~A~~~~~~~--~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 612 (831)
...|......+|.+... ++.++ ...|+.-++..+|..- .. .|-.++..-+..........|+.++-+...+.+
T Consensus 870 ~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 870 EPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred hHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 99999999999887322 34444 4678888888888762 22 122223333333333344455555544333333
Q ss_pred HhC---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhHHHH----HHHHHHHcCCHHHHHHH
Q 003315 613 ITL---------NAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDK-GLTPHLVTYTM----MIHGYCKINCLREARDV 678 (831)
Q Consensus 613 ~~~---------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~----l~~~~~~~g~~~~A~~~ 678 (831)
... +.+.+...|...+...-+.+.+..|.....+.... ..+-|...||. +.+.++..|.++.|..-
T Consensus 950 ~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a 1029 (1238)
T KOG1127|consen 950 SSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKA 1029 (1238)
T ss_pred hhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhh
Confidence 221 22344556666666666677777766666554320 01224455553 34455566777766544
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHH-cCCCCCH-HHHHHHHHHHHhcCC
Q 003315 679 FNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKE-MGIRPDV-ISYTVLIAKLCNTQN 756 (831)
Q Consensus 679 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~-~~~~p~~-~~~~~l~~~~~~~g~ 756 (831)
+...... .+...-..-+..+. .+++.++.+.|++... .+-..+. +....++.+....+.
T Consensus 1030 ~~~~~~e---vdEdi~gt~l~lFf----------------kndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~ 1090 (1238)
T KOG1127|consen 1030 SWKEWME---VDEDIRGTDLTLFF----------------KNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQ 1090 (1238)
T ss_pred hcccchh---HHHHHhhhhHHHHH----------------HhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhccc
Confidence 4322110 01111111111111 4667888888888764 2223333 355667777778888
Q ss_pred hHHHHHHHHHHHHC
Q 003315 757 LEDGITVFNEISDR 770 (831)
Q Consensus 757 ~~~A~~~~~~~~~~ 770 (831)
-+.|...+-+....
T Consensus 1091 k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1091 KNDAQFLLFEVKSL 1104 (1238)
T ss_pred chHHHHHHHHHHHh
Confidence 88888777766653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.6e-10 Score=111.03 Aligned_cols=201 Identities=11% Similarity=0.062 Sum_probs=158.6
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
....+..++..+...|++++|+..++++++..+. +...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 4667888999999999999999999998887643 67778888899999999999999999988764 446677888888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHh
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGV-TPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLE 327 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 327 (831)
.+...|++++|.+.++++.+... ......+..+..++...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 88999999999999999886422 2234466667778888888888888888888764 455677778888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 328 KAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTS 373 (831)
Q Consensus 328 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 373 (831)
+|...+++..+.. ..+...+..++..+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8888888887762 33556666777777788888888887776654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-08 Score=100.88 Aligned_cols=153 Identities=14% Similarity=0.089 Sum_probs=98.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHhhccccC
Q 003315 636 EMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFN--------DMKQRGITPDVVTYTVLFDAHSKINLK 707 (831)
Q Consensus 636 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~ll~~~~~~~~~ 707 (831)
....|..++...-+....-...+.-.++.....+|+++.|++++. ...+.+..|-.+.+ ++..+.+.+..
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~a--iv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGA--IVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHH--HHHHHHhccCC
Confidence 467777777777765333234555667777788999999999998 66666666665544 33333332210
Q ss_pred CCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003315 708 GSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDV-ISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGY 786 (831)
Q Consensus 708 ~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~ 786 (831)
+ + ...-..+|...|..-... .+.. ..+.-++..-.+.|+-++|..+++++.+. .++|..+...++.+|
T Consensus 434 ~--~------a~~vl~~Ai~~~~~~~t~--s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~ 502 (652)
T KOG2376|consen 434 D--S------ASAVLDSAIKWWRKQQTG--SIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAY 502 (652)
T ss_pred c--c------HHHHHHHHHHHHHHhccc--chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHH
Confidence 0 0 011234555555543211 1211 24444455556889999999999999986 567899999999999
Q ss_pred HhcCCHHHHHHHHHHH
Q 003315 787 LAKGDLDRAIALVDEM 802 (831)
Q Consensus 787 ~~~g~~~~A~~~~~~~ 802 (831)
.+. |.+.|..+-+.+
T Consensus 503 ~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 503 ARL-DPEKAESLSKKL 517 (652)
T ss_pred Hhc-CHHHHHHHhhcC
Confidence 988 789998876654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.4e-08 Score=101.71 Aligned_cols=297 Identities=16% Similarity=0.156 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHH-HHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYV-IVIKAL 250 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~ 250 (831)
+.......+...|++++|++.+...... +..........+..+.+.|+.++|..+|..+++.+ |+...|. .+..+.
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHH
Confidence 3345556678899999999999875554 33356667788899999999999999999999876 5555544 444444
Q ss_pred Hh-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 003315 251 CK-----KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGML-DLGYELLLKWEEADIPLSAFAYTVVIRWFCDQN 324 (831)
Q Consensus 251 ~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 324 (831)
.- ..+.+...++|+++.+. -|.......+.-.+.....+ ..+..++..+...|+|+ +|..+-..|....
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPE 157 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChh
Confidence 22 23567788888888765 35444443333222222233 34556667777777553 5666666666555
Q ss_pred CHhHHHHHHHHHHHC----C----------CCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 003315 325 KLEKAECVLLHMEKQ----G----------VVPDVY--AYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILK 388 (831)
Q Consensus 325 ~~~~A~~~~~~~~~~----~----------~~p~~~--~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 388 (831)
+.+-..+++...... + -.|... ++..+.+.|...|++++|++.+++.++..+. ....|..-.+
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~Kar 236 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 555555666655432 1 123332 4455677788889999999999888876422 3556666777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh------H--HHHHHHH
Q 003315 389 GLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVN------Y--TTMICGY 460 (831)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~--~~li~~~ 460 (831)
.+-..|++.+|.+.++........ |...-+..+..+.+.|++++|.+++......+..|-... | .....+|
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 777888888888888887776543 556666667777788888888888877765543222211 1 2334567
Q ss_pred HccCChhhHHHHHHHHHH
Q 003315 461 CLQGKLGDALDLFKEMKE 478 (831)
Q Consensus 461 ~~~g~~~~A~~~~~~~~~ 478 (831)
.+.|++..|++.|....+
T Consensus 316 ~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 777887777776665543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.7e-10 Score=108.30 Aligned_cols=164 Identities=13% Similarity=0.040 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCChhhHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGL-SLNEYTYVIVIKAL 250 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~ 250 (831)
++..++..+...|++++|+..++++.+..+. +...+..+...+...|++++|...|++..+... +.....+..+...+
T Consensus 67 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 67 AYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 3444445555555555555555555444322 333444445555555555555555555443211 11223344445555
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHH
Q 003315 251 CKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAE 330 (831)
Q Consensus 251 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 330 (831)
...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..++..+...|+.++|.
T Consensus 146 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (234)
T TIGR02521 146 LKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQ 223 (234)
T ss_pred HHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 55556666666655555432 223344555555555666666666666555554 2334445555556666666666666
Q ss_pred HHHHHHHH
Q 003315 331 CVLLHMEK 338 (831)
Q Consensus 331 ~~~~~~~~ 338 (831)
.+.+.+..
T Consensus 224 ~~~~~~~~ 231 (234)
T TIGR02521 224 RYGAQLQK 231 (234)
T ss_pred HHHHHHHh
Confidence 66555543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-10 Score=108.00 Aligned_cols=230 Identities=13% Similarity=0.086 Sum_probs=186.0
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 003315 454 TTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMG 533 (831)
Q Consensus 454 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 533 (831)
+.+.++|.+.|.+.+|.+-|+..++. .|-+.||..+-.+|.+.+++..|+.++.+-++. ++-++....-....+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 35667788888888888888877765 355667777888888888888888888887765 355555556666677778
Q ss_pred CCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 003315 534 GRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFK 610 (831)
Q Consensus 534 g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 610 (831)
++.++|.++++...+.++.+ ...+...|.-.++++-|+.+++++.+.|.. ++..+..++-+|...+++|-++.-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 88888888888888776655 444567778888999999999999999987 88899999999999999999999999
Q ss_pred HHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003315 611 TMITLNAEPS--KSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGIT 688 (831)
Q Consensus 611 ~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 688 (831)
++...-..|+ ..+|-.+..+....|++..|.+.|+-++..+.. +...+|.|.-.-.+.|++++|..+++.... +.
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s--~~ 459 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS--VM 459 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh--hC
Confidence 9987765565 346777888888999999999999999987555 678899999988999999999999999876 45
Q ss_pred CC
Q 003315 689 PD 690 (831)
Q Consensus 689 p~ 690 (831)
|+
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 55
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-07 Score=100.37 Aligned_cols=302 Identities=15% Similarity=0.120 Sum_probs=165.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---
Q 003315 248 KALCKKGSMQEAVEVFLEMEKAGVTPNA-FAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQ--- 323 (831)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 323 (831)
..+...|++++|++.+++-... .+|. .........+.+.|+.++|..++..+++.+ |.+..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 4466778888888887665443 3343 344555667777777777777777777775 44555555555555222
Q ss_pred --CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH-HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHH
Q 003315 324 --NKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKIN-KALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATI 400 (831)
Q Consensus 324 --g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 400 (831)
.+.+...++++++...- |.......+.-.+.....+. .+...+..++.+|+++ ++..+-..|.......-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 24566666777666652 33333333332233222232 3344555555666542 2222222222222222111
Q ss_pred HHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH--HHHHHHHHccCChhhHHHHHHHHHH
Q 003315 401 KQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNY--TTMICGYCLQGKLGDALDLFKEMKE 478 (831)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~ 478 (831)
+++...... +...+.+.... ....-+|+...| .-+.+.|-..|++++|++.+++.++
T Consensus 164 ~l~~~~~~~---------------l~~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ 222 (517)
T PF12569_consen 164 SLVEEYVNS---------------LESNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE 222 (517)
T ss_pred HHHHHHHHh---------------hcccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 222111110 00000000000 000112333333 4445667777888888888887777
Q ss_pred cCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC-----
Q 003315 479 MGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN----- 553 (831)
Q Consensus 479 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----- 553 (831)
..+. .+..|..-...+-..|++++|.+.++...+.. .-|-.+-+..+..+.+.|++++|++.+......+...
T Consensus 223 htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~ 300 (517)
T PF12569_consen 223 HTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLN 300 (517)
T ss_pred cCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHH
Confidence 6433 35667777777778888888888888877664 4455556666667778888888888777776554322
Q ss_pred -----h--HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003315 554 -----Y--SAMINGYCKTGHTKEAFQLFMRLSNQ 580 (831)
Q Consensus 554 -----~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (831)
| ...+.+|.+.|++..|+..|..+.+.
T Consensus 301 ~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 301 DMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 1 23466777888888887777665443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.7e-10 Score=104.10 Aligned_cols=230 Identities=10% Similarity=0.009 Sum_probs=173.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 003315 174 DAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKK 253 (831)
Q Consensus 174 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (831)
..++++|.+.|++.+|...++..++. .|.+.+|..+..+|.+..+.+.|+.+|.+.++. .|-|+.....+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 47899999999999999999998876 457778888999999999999999999998875 344555556777888889
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 003315 254 GSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVL 333 (831)
Q Consensus 254 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 333 (831)
++.++|.++|+...+.. +.++.....+...|.-.++++.|+.+|+++++.| ..++..|+.+.-+|.-.++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999988764 4566666777777888888888888888888888 457788888888888888888888888
Q ss_pred HHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 003315 334 LHMEKQGVVPD--VYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGF 411 (831)
Q Consensus 334 ~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 411 (831)
++....--.|+ ..+|-.+..+....|++..|.+.|+-.+..+..
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~---------------------------------- 427 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ---------------------------------- 427 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc----------------------------------
Confidence 87765433333 345666666666677777777777766654322
Q ss_pred CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003315 412 FLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDR 444 (831)
Q Consensus 412 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 444 (831)
+...+|.|.-.-.+.|++++|..++....+.
T Consensus 428 --h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 428 --HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred --hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 3455556666666777777777777766553
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-09 Score=109.10 Aligned_cols=219 Identities=10% Similarity=0.008 Sum_probs=153.2
Q ss_pred CChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHH
Q 003315 96 KEPKIALSFFEQLKRSG---FSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRL 172 (831)
Q Consensus 96 ~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (831)
+..+.++.-+.++.... ....+..|...+.++...|++++|...|.+.++..|+ ++.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-------------------~~~a 100 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-------------------MADA 100 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-------------------CHHH
Confidence 35666777777776421 1223566888888899999999999999998887554 5678
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003315 173 SDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK 252 (831)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (831)
|..++..+...|++++|+..|+++++.++. +..++..++.++...|++++|.+.|+...+.. |+.............
T Consensus 101 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~ 177 (296)
T PRK11189 101 YNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAES 177 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHc
Confidence 899999999999999999999999988755 67778888899999999999999999988754 433222222223345
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CC---CCChhhHHHHHHHHHhcCCH
Q 003315 253 KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEA---DI---PLSAFAYTVVIRWFCDQNKL 326 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~ 326 (831)
.+++++|.+.|++..... .|+...+ .......|+..++ +.++.+.+. .. +....+|..+...+.+.|++
T Consensus 178 ~~~~~~A~~~l~~~~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~ 252 (296)
T PRK11189 178 KLDPKQAKENLKQRYEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDL 252 (296)
T ss_pred cCCHHHHHHHHHHHHhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 678999999997765432 3332222 2223345555544 344444432 10 12345788888888888888
Q ss_pred hHHHHHHHHHHHCCC
Q 003315 327 EKAECVLLHMEKQGV 341 (831)
Q Consensus 327 ~~A~~~~~~~~~~~~ 341 (831)
++|...|++..+.++
T Consensus 253 ~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 253 DEAAALFKLALANNV 267 (296)
T ss_pred HHHHHHHHHHHHhCC
Confidence 888888888887643
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.5e-06 Score=87.63 Aligned_cols=111 Identities=17% Similarity=0.202 Sum_probs=71.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG 254 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (831)
..+.+-...++|.+|+.+++.+..... -...|..+..-|...|+++.|.++|.+.- .++-.|..|.+.|
T Consensus 737 kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccc
Confidence 445555667777778877777665532 22346667777777888888887775532 2344566777888
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 003315 255 SMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELL 298 (831)
Q Consensus 255 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 298 (831)
+|+.|.++-++.. |.......|..-..-+-+.|++.+|.++|
T Consensus 806 kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 806 KWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred cHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 8888877766543 33444555666556666777777766655
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-06 Score=88.52 Aligned_cols=216 Identities=16% Similarity=0.173 Sum_probs=109.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHH
Q 003315 423 DSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQ 502 (831)
Q Consensus 423 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 502 (831)
..+...|+++.|+..|-+... ....+.+....+.+.+|+.+++.+..... ...-|..+.+.|...|+++
T Consensus 714 ~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe 782 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFE 782 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHH
Confidence 334445555555555543321 12233444555666666666666655422 2233455556666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC--hHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003315 503 KAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN--YSAMINGYCKTGHTKEAFQLFMRLSNQ 580 (831)
Q Consensus 503 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (831)
.|.++|.+.- .++-.|.+|.+.|+++.|.++-.+.......+ |-+-..-+-++|++.+|.+++-.+
T Consensus 783 ~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti--- 850 (1636)
T KOG3616|consen 783 IAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITI--- 850 (1636)
T ss_pred HHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEc---
Confidence 6666665431 23445556666666666666655544332221 333333444556666665554221
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 003315 581 GVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYT 660 (831)
Q Consensus 581 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 660 (831)
..-...+..|-+.|..++.+++.++-.. ..-..|-..+..-|-..|++..|..-|-+..+ |.
T Consensus 851 ------~~p~~aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~k 912 (1636)
T KOG3616|consen 851 ------GEPDKAIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FK 912 (1636)
T ss_pred ------cCchHHHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HH
Confidence 1112334445555555555555543321 11123444555666667777777666654432 33
Q ss_pred HHHHHHHHcCCHHHHHHHH
Q 003315 661 MMIHGYCKINCLREARDVF 679 (831)
Q Consensus 661 ~l~~~~~~~g~~~~A~~~~ 679 (831)
+-++.|...+.+++|.++-
T Consensus 913 aavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 913 AAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HHHHHhhhhhhHHHHHHHH
Confidence 4455555566666655543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.5e-07 Score=86.94 Aligned_cols=268 Identities=12% Similarity=-0.015 Sum_probs=159.9
Q ss_pred cCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHH
Q 003315 413 LNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLA 492 (831)
Q Consensus 413 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 492 (831)
-|+.....+.+.+...|+.++|+..|++....+.. +..........+.+.|+.++...+...+.... +.....|..-+
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 35555566666666666666666666665543110 11111112223445566666665555554321 11222233333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC---CChHHHHHHHHhcCCHHH
Q 003315 493 GAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCL---ENYSAMINGYCKTGHTKE 569 (831)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~ 569 (831)
..+...++++.|+.+-++.++.+ +.+...+-.-...+...|+.++|.-.|+.....-| +.|.-|+.+|...|++.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 33445566666666666665543 33334444444455566666666666666555433 336666777777777666
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003315 570 AFQLFMRLSNQGVLVKKSSCNKLI-TNLL-ILRDNNNALKLFKTMITLNAEPS-KSMYDKLIGALCQAEEMEQAQLVFNV 646 (831)
Q Consensus 570 A~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 646 (831)
|.-+-+.....-. .+..++..++ .++. ...--++|..++++..+. .|+ ....+.+.+.+...|+.+.+..+++.
T Consensus 387 A~~~An~~~~~~~-~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 387 ANALANWTIRLFQ-NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHhh-cchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 6655544433211 1344444442 2222 223457888888888765 454 33456677788889999999999999
Q ss_pred HHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003315 647 LVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPD 690 (831)
Q Consensus 647 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 690 (831)
.+.. .||....+.|.+.+...+.+++|++.|...+. +.|+
T Consensus 464 ~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~ 503 (564)
T KOG1174|consen 464 HLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPK 503 (564)
T ss_pred HHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCcc
Confidence 8874 78999999999999999999999999998886 4554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-06 Score=90.67 Aligned_cols=508 Identities=16% Similarity=0.146 Sum_probs=284.6
Q ss_pred ChhhHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-C-------CCC
Q 003315 239 NEYTYVIVIK--ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEA-D-------IPL 308 (831)
Q Consensus 239 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------~~~ 308 (831)
|..|-..+++ .|...|+.+.|.+-.+-++ ....|..+.+.|.+..+.|-|.-.+..|... | .+.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 5566666664 3556788888887776654 3456777888888777777666555443321 0 011
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 003315 309 SAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILK 388 (831)
Q Consensus 309 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 388 (831)
+...-...+-.....|-+++|+.++++-++ |..|=..|...|.|++|.++-+.--.... ..||.....
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~ 866 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAK 866 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHH
Confidence 112222334445567888899998888775 33455667778999999887665322222 346666677
Q ss_pred HHHhcCChHHHHHHHHHHHHC----------CC---------CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003315 389 GLCQKGMASATIKQFLEFKDM----------GF---------FLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPD 449 (831)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~----------~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 449 (831)
-+...++.+.|++.|++.... .+ ..|...|.--...+...|+.+.|+.+|...++
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------ 940 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------ 940 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------
Confidence 777788888888887753211 11 12334444445555667788888887776653
Q ss_pred hhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHH
Q 003315 450 VVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHG--------LEPNFV 521 (831)
Q Consensus 450 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~ 521 (831)
|-.+++..|-+|+.++|-++-++- -|......+.+.|-..|++.+|...|.++.... ...+..
T Consensus 941 ---~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~ 1011 (1416)
T KOG3617|consen 941 ---YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDR 1011 (1416)
T ss_pred ---hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 456777788889999988887653 255666678888999999999988888765310 001111
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhcCCHHHHHHHHHH--------H--HhCCCCCCcccHHH
Q 003315 522 THNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMR--------L--SNQGVLVKKSSCNK 591 (831)
Q Consensus 522 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--------~--~~~~~~~~~~~~~~ 591 (831)
..+.. ......+.-.|-++|++. +......+..|-+.|.+.+|+++--+ + ...+...|+..++.
T Consensus 1012 L~nla--l~s~~~d~v~aArYyEe~----g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~R 1085 (1416)
T KOG3617|consen 1012 LANLA--LMSGGSDLVSAARYYEEL----GGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRR 1085 (1416)
T ss_pred HHHHH--hhcCchhHHHHHHHHHHc----chhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHH
Confidence 11110 011112222333333332 12233345566677777777665221 1 12234446666777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----------CCC----------------CCCH----HHHHHHHHHHHhcCCHHHHH
Q 003315 592 LITNLLILRDNNNALKLFKTMIT----------LNA----------------EPSK----SMYDKLIGALCQAEEMEQAQ 641 (831)
Q Consensus 592 l~~~~~~~~~~~~a~~~~~~~~~----------~~~----------------~p~~----~~~~~l~~~~~~~g~~~~A~ 641 (831)
....++...++++|..++-.+.+ .|+ .|+. .+...+.+.|.++|.+..|.
T Consensus 1086 cadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~At 1165 (1416)
T KOG3617|consen 1086 CADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAAT 1165 (1416)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHH
Confidence 77777777777777766644332 111 1222 25556778889999999888
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH----------------HHHHHHHHHHCCCCCC------HHHH-----
Q 003315 642 LVFNVLVDKGLTPHLVTYTMMIHGYCKINCLRE----------------ARDVFNDMKQRGITPD------VVTY----- 694 (831)
Q Consensus 642 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----------------A~~~~~~m~~~~~~p~------~~~~----- 694 (831)
+-|.++-.+ -.-++++.+.|+.++ |..+++.+ ....| +.||
T Consensus 1166 KKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtl---DWq~~pq~mK~I~tFYTKgq 1233 (1416)
T KOG3617|consen 1166 KKFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTL---DWQDNPQTMKDIETFYTKGQ 1233 (1416)
T ss_pred HHHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhc---ccccChHHHhhhHhhhhcch
Confidence 877765432 123455555555444 11222111 11111 2221
Q ss_pred --HH---HHHHhhccccCCCCCCCchh----hcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-----------c
Q 003315 695 --TV---LFDAHSKINLKGSSSSPDAL----QCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCN-----------T 754 (831)
Q Consensus 695 --~~---ll~~~~~~~~~~~~~~~~~~----~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-----------~ 754 (831)
.. .-..|+.+. ++.+ +..+..++|-+-+.+....+ .....|+.|=.-..+ .
T Consensus 1234 afd~LanFY~~cAqiE-------iee~q~ydKa~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l~~~q~~~ 1304 (1416)
T KOG3617|consen 1234 AFDHLANFYKSCAQIE-------IEELQTYDKAMGALEEAAKCLLKAEQKN--MSTTGLDALQEDLAKVKVQLRKLQIMK 1304 (1416)
T ss_pred hHHHHHHHHHHHHHhh-------HHHHhhhhHHhHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 112222211 0111 12233444555554444322 111233333222221 1
Q ss_pred CChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003315 755 QNLEDGITVFNEISDRGLEPDT----VTYTALLCGYLAKGDLDRAIALVDEMSVKG 806 (831)
Q Consensus 755 g~~~~A~~~~~~~~~~g~~pd~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 806 (831)
.+..+.++-...|.+...-||+ .+|.-|+..+....++..|-+.+++|..+-
T Consensus 1305 eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1305 EDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred hhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 2445555556666655444443 467788899999999999999999999863
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-08 Score=101.30 Aligned_cols=199 Identities=16% Similarity=0.082 Sum_probs=148.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
.+..|..++..|...|++++|+..|+++++.++. +..+++.+...+...|++++|...|++.++.. +.+..+|..+..
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~ 140 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGI 140 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4567889999999999999999999999998755 78899999999999999999999999999864 345678888888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhH
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEK 328 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 328 (831)
.+...|++++|++.|++..+. .|+..........+...++.++|...+++..... +++...+ .+ .....|+...
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~ 214 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NI--VEFYLGKISE 214 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HH--HHHHccCCCH
Confidence 899999999999999999886 4543322222333456788999999997766543 3332221 22 2334555554
Q ss_pred HHHHHHHHHHC---CC--C-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003315 329 AECVLLHMEKQ---GV--V-PDVYAYSALISGYCKFGKINKALLLHHEMTSKGI 376 (831)
Q Consensus 329 A~~~~~~~~~~---~~--~-p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 376 (831)
+ +.++.+.+. .+ . .....|..+...+.+.|++++|+..|++....++
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 4 355555432 11 1 1335788889999999999999999999987654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-08 Score=91.04 Aligned_cols=201 Identities=15% Similarity=0.058 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA 249 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (831)
..+...|+-.|...|++..|..-++++++.++. +..++..+...|.+.|+.+.|.+.|+..++.. +.+....|.....
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~F 112 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHH
Confidence 346678899999999999999999999999855 78889999999999999999999999999865 4567788889999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhH
Q 003315 250 LCKKGSMQEAVEVFLEMEKAGVT-PNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEK 328 (831)
Q Consensus 250 ~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 328 (831)
+|..|++++|...|+++...-.- .-..+|..+.-+-.+.|+++.|...|++.++.+ +..+.+...+.+...+.|++..
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchH
Confidence 99999999999999999875222 234578888888889999999999999999886 5667788889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 329 AECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSK 374 (831)
Q Consensus 329 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 374 (831)
|...++.....+. ++..+.-..|..--..|+.+.+.+.=.++...
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999988766 68888888888888889988887776666553
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.7e-11 Score=82.48 Aligned_cols=50 Identities=46% Similarity=0.883 Sum_probs=45.2
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 003315 654 PHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSK 703 (831)
Q Consensus 654 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 703 (831)
||..+||+++++|++.|++++|.++|++|.+.|+.||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999998864
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.4e-11 Score=81.91 Aligned_cols=49 Identities=37% Similarity=0.853 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003315 739 PDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYL 787 (831)
Q Consensus 739 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~ 787 (831)
||..+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.3e-09 Score=107.33 Aligned_cols=176 Identities=14% Similarity=0.129 Sum_probs=114.4
Q ss_pred CChHHHHHHHHhccCChhHHHHHHHHHHhC-----CCC-CCHHHH-HHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhH
Q 003315 82 LNTREVVEKLYSLRKEPKIALSFFEQLKRS-----GFS-HNLCTY-AAIVRILCCCGWQKKLESMLLELVRKKTDANFEA 154 (831)
Q Consensus 82 ~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~-----~~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 154 (831)
......+...|..+|+++.|...|.++.+. |.. +...+. ..++..|...+++.+|..+|.+++.-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i-------- 270 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI-------- 270 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------
Confidence 344555678888999999999999998732 322 222222 33677888999999999999987654
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-----C-CcChh-hHHHHHHHHHHcCChhHHHHH
Q 003315 155 TDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRG-----F-VWSIC-SCNYFMNQLVECGKVDMALAV 227 (831)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~-~~~~~-~~~~l~~~~~~~~~~~~A~~~ 227 (831)
++...+...+....++..|+.+|.+.|++++|...++++.+.- . .+.+. .++.+...+...+++++|..+
T Consensus 271 ---~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l 347 (508)
T KOG1840|consen 271 ---REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKL 347 (508)
T ss_pred ---HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4455566667778899999999999999999999988876421 0 11111 233444555556666666666
Q ss_pred HHHHHhcC---CCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 228 YQHLKRLG---LSLN----EYTYVIVIKALCKKGSMQEAVEVFLEMEK 268 (831)
Q Consensus 228 ~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 268 (831)
+....+.- +.++ ..+++.|...|.+.|++++|.++|++++.
T Consensus 348 ~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 348 LQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 65543210 1111 23555666666666666666666665543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-08 Score=105.49 Aligned_cols=208 Identities=18% Similarity=0.087 Sum_probs=111.6
Q ss_pred CCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-----C-CCcChhh-HHHHHHHHHHcCChhHHHHHHHHHHhc--
Q 003315 164 EGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR-----G-FVWSICS-CNYFMNQLVECGKVDMALAVYQHLKRL-- 234 (831)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~-- 234 (831)
.+.+....+...++..|...|+++.|...+.++++. | ..|.+.+ .+.+...|...+++++|..+|++++..
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 344555566667888888888888888888777654 1 0122322 233566667777777777777766542
Q ss_pred ---CC-CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhC-----CC-CCCHH-HHHHHHHHHHhcCChhHHHHHHHHHH
Q 003315 235 ---GL-SL-NEYTYVIVIKALCKKGSMQEAVEVFLEMEKA-----GV-TPNAF-AYSTCIEGLCMNGMLDLGYELLLKWE 302 (831)
Q Consensus 235 ---~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (831)
|- .| -..+++.|...|.+.|++++|...++++.+. |. .|.+. .++.++..++..+++++|..+++...
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 10 01 1235566666677777777766666665431 11 11221 34444555666666666666665544
Q ss_pred HCC---CCC----ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC----C--CC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 003315 303 EAD---IPL----SAFAYTVVIRWFCDQNKLEKAECVLLHMEKQG----V--VP-DVYAYSALISGYCKFGKINKALLLH 368 (831)
Q Consensus 303 ~~~---~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~--~p-~~~~~~~li~~~~~~~~~~~A~~~~ 368 (831)
+.- +.+ -..+++.|...|...|++++|++++++.+... . .+ ....++.|...|.+.+++.+|.++|
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 320 111 13455556666666666666666665554320 0 11 1223444555555555555555555
Q ss_pred HHH
Q 003315 369 HEM 371 (831)
Q Consensus 369 ~~~ 371 (831)
.+.
T Consensus 433 ~~~ 435 (508)
T KOG1840|consen 433 EEA 435 (508)
T ss_pred HHH
Confidence 443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.3e-08 Score=87.22 Aligned_cols=194 Identities=11% Similarity=-0.061 Sum_probs=125.2
Q ss_pred HHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCc
Q 003315 124 VRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVW 203 (831)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 203 (831)
+-.|...|+...|..-++++++.+|. +..++..++..|.+.|..+.|.+.|+++++..+.
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~DPs-------------------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~- 101 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEHDPS-------------------YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN- 101 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcc-------------------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-
Confidence 33445555566666666666665443 4456667777777777777777777777776644
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003315 204 SICSCNYFMNQLVECGKVDMALAVYQHLKRLG-LSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCI 282 (831)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 282 (831)
+..+.|.....++..|++++|...|++..... ...-..+|..+.-...+.|+.+.|...|++.++.. +....+...+.
T Consensus 102 ~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a 180 (250)
T COG3063 102 NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELA 180 (250)
T ss_pred ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHH
Confidence 66667777777777777777777777766531 11123466666666667777777777777777653 22344556666
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 283 EGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
....+.|++..|...++.....+ +++....-..|+.--+.|+.+.+.+.=..+.+.
T Consensus 181 ~~~~~~~~y~~Ar~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 181 RLHYKAGDYAPARLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHhcccchHHHHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77777777777777777776665 366666666677777777777666665555554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.1e-07 Score=91.81 Aligned_cols=423 Identities=15% Similarity=0.080 Sum_probs=223.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCC
Q 003315 177 IKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLN-EYTYVIVIKALCKKGS 255 (831)
Q Consensus 177 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 255 (831)
+.+.+..|+++.|+..|..++..++. |...|..-..+|...|++++|++--.+-++. .|+ +..|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 45566788888888888888888755 7777888888888888888888776665553 344 4578888888888888
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CHhHHHHHHH
Q 003315 256 MQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQN-KLEKAECVLL 334 (831)
Q Consensus 256 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~ 334 (831)
+++|+..|.+-++.. +.+...++-+..++. .+.+. +. .-.++..+..+..-=.... -.+.+.....
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~----~~~~~-----~~---~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYL----EDYAA-----DQ---LFTKPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhh----HHHHh-----hh---hccCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 888888888877763 334555665655551 11110 11 1112233322221111111 0112222222
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-----HHhCC-------CCCCHhhHHHHHHHHHhcCChHHHHHH
Q 003315 335 HMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHE-----MTSKG-------IKTNCGVLSVILKGLCQKGMASATIKQ 402 (831)
Q Consensus 335 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~-----~~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~ 402 (831)
+....++. +. ..|.+-.++..|...+.. +...+ ..|... ........++..+-.+.
T Consensus 153 ~~~~~~p~-~l-------~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~~d~~ee~~~ 220 (539)
T KOG0548|consen 153 EIIQKNPT-SL-------KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQ----EHNGFPIIEDNTEERRV 220 (539)
T ss_pred HHhhcCcH-hh-------hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccc----cCCCCCccchhHHHHHH
Confidence 22222111 11 111111111111111110 00011 111100 00000000000000000
Q ss_pred HHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCC
Q 003315 403 FLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHK 482 (831)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 482 (831)
..-..-...+++...+..+++.|++.+....... .+..-++....+|...|.+.+....-....+.|-.
T Consensus 221 ---------k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre 289 (539)
T KOG0548|consen 221 ---------KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE 289 (539)
T ss_pred ---------HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH
Confidence 0011223456666777777888888887776653 35555666666777777777766666665554432
Q ss_pred CCcchHHH-------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC--
Q 003315 483 PDIITYNV-------LAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN-- 553 (831)
Q Consensus 483 ~~~~~~~~-------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-- 553 (831)
...-|+. +..++.+.++++.++..+.+.+.....|+. ..+....+++.+..+...-.+|+.
T Consensus 290 -~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~ 359 (539)
T KOG0548|consen 290 -LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEKAE 359 (539)
T ss_pred -HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHH
Confidence 2222222 333555566777888888776654333332 222333344444443333333333
Q ss_pred -hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003315 554 -YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALC 632 (831)
Q Consensus 554 -~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 632 (831)
...-+..+.+.|++..|+..|.+++...+. |...|....-+|.+++.+..|+.-.+..++.+ ++....|.-=+.++.
T Consensus 360 e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 360 EEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHH
Confidence 222366677777888888888887777654 66777777777777777777777777666653 222333444445555
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 003315 633 QAEEMEQAQLVFNVLVDK 650 (831)
Q Consensus 633 ~~g~~~~A~~~~~~~~~~ 650 (831)
...+++.|.+.|++.++.
T Consensus 438 ~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 566777777777777765
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.7e-07 Score=84.63 Aligned_cols=210 Identities=11% Similarity=-0.007 Sum_probs=113.4
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCC
Q 003315 87 VVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGS 166 (831)
Q Consensus 87 ~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (831)
-++.-...+|+...|+..|..+..-++. +-.++.+-+..|+..|+.+.|+.=+..+++..|+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpD----------------- 104 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPD----------------- 104 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCcc-----------------
Confidence 3444445567777777777776654211 3333444455566667766666666666666433
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
...+-..-+..+.+.|.+++|..-|+++++..+. ..+ ...+..+.--.++-+. ....
T Consensus 105 --F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s--~~~---~~eaqskl~~~~e~~~----------------l~~q 161 (504)
T KOG0624|consen 105 --FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPS--NGL---VLEAQSKLALIQEHWV----------------LVQQ 161 (504)
T ss_pred --HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCC--cch---hHHHHHHHHhHHHHHH----------------HHHH
Confidence 1222334444556666666666666666665422 110 0111111110111111 1122
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKL 326 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 326 (831)
+..+...|+...|++....+++.. +-|...+..-..+|...|++..|+.-+....+.. ..+..++.-+-..+...|+.
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~ 239 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDA 239 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhH
Confidence 233445677777777777776642 3455566666666777777777766666655543 44555666666666666776
Q ss_pred hHHHHHHHHHHHC
Q 003315 327 EKAECVLLHMEKQ 339 (831)
Q Consensus 327 ~~A~~~~~~~~~~ 339 (831)
+.++...++..+.
T Consensus 240 ~~sL~~iRECLKl 252 (504)
T KOG0624|consen 240 ENSLKEIRECLKL 252 (504)
T ss_pred HHHHHHHHHHHcc
Confidence 6666666666654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.5e-07 Score=96.14 Aligned_cols=201 Identities=13% Similarity=0.001 Sum_probs=140.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-cCh-hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFV-WSI-CSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
.+.++..++..+...|+.+++...+.+..+.... .+. .........+...|++++|.+.+++..+.. |.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-
Confidence 4557778888888889999988888887665432 121 122223445677899999999999988753 344444442
Q ss_pred HHHHHh----cCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 003315 247 IKALCK----KGSMQEAVEVFLEMEKAGVTPN-AFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFC 321 (831)
Q Consensus 247 ~~~~~~----~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (831)
...+.. .+....+.+.++.. ....|+ ......+...+...|++++|...+++..+.. |.+...+..+...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 222222 45555555555441 122333 3344566678889999999999999999886 667788888999999
Q ss_pred hcCCHhHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 322 DQNKLEKAECVLLHMEKQGVV-PDV--YAYSALISGYCKFGKINKALLLHHEMTSK 374 (831)
Q Consensus 322 ~~g~~~~A~~~~~~~~~~~~~-p~~--~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 374 (831)
..|++++|...+++....... |+. ..|..+...+...|++++|...+++....
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 999999999999988875321 232 34557888899999999999999998643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=8e-07 Score=84.13 Aligned_cols=333 Identities=12% Similarity=0.033 Sum_probs=194.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChh-hHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEY-TYVIVI 247 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~ 247 (831)
+..-...+++.+...|++.+|+..|-.+++.++. +-.++-.-...|...|+..-|+.-+.++++. +||-. .-..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 4445568999999999999999999999887543 4445555667888999999999999999984 56643 223334
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHh
Q 003315 248 KALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLE 327 (831)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 327 (831)
..+.++|.+++|..-|+..++.. |+..+- ..+..+.-..++-. .....+..+...|+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQ 172 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchh
Confidence 56789999999999999999873 432111 11111111111111 1122333445566777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 328 KAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFK 407 (831)
Q Consensus 328 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 407 (831)
.|......+++-.+- |...|..-..+|...|++..|+.-++...+.... +..++..+-..+...|+.+.++...++.+
T Consensus 173 ~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 173 NAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 777777777665333 6666666667777777777776666555443222 34445555566666666666666666655
Q ss_pred HCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcch
Q 003315 408 DMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIIT 487 (831)
Q Consensus 408 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 487 (831)
+.++. ...+...|+.+++. .... .-+....+.++|.++++..+...+..+......
T Consensus 251 Kldpd------------------HK~Cf~~YKklkKv-----~K~l-es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir 306 (504)
T KOG0624|consen 251 KLDPD------------------HKLCFPFYKKLKKV-----VKSL-ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIR 306 (504)
T ss_pred ccCcc------------------hhhHHHHHHHHHHH-----HHHH-HHHHHHHhhhhHHHHHHHHHHHHhcCCccccee
Confidence 54321 11122222222210 0000 001123455666666666666666544322222
Q ss_pred H---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC
Q 003315 488 Y---NVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLE 552 (831)
Q Consensus 488 ~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 552 (831)
| ..+-.++...+++.+|++...+.++.. +.|+.++.--..+|.-...+|.|+.-|+...+.++.
T Consensus 307 ~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 307 YNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred eeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 2 233344455667777777777776542 334666666666666666666776666666655443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.5e-08 Score=89.45 Aligned_cols=351 Identities=14% Similarity=0.062 Sum_probs=224.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHH-HHHHHHH
Q 003315 173 SDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYV-IVIKALC 251 (831)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~ 251 (831)
+...+..+.+..++.+|++++..-.+..+. +......+...|....++..|...|+++-.. .|...-|. .-...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 456666678889999999999988887644 6667888899999999999999999998764 35544443 2344566
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHH
Q 003315 252 KKGSMQEAVEVFLEMEKAGVTPNAFAY--STCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKA 329 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 329 (831)
+.+.+..|+.+...|.+. |+...- ..-.......+|+..+..++++....| +..+.+...-...+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 889999999999888753 333222 222233557888999998888866433 444555566667789999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh----HHHHHHHHHhcCChHHHHHHHHH
Q 003315 330 ECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGV----LSVILKGLCQKGMASATIKQFLE 405 (831)
Q Consensus 330 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~ 405 (831)
.+-|+...+-+--.....|+..+. ..+.++++.|++...+++++|++..+.. ..-.+.+-. .|+ -+.+...
T Consensus 164 vqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs-vgN---t~~lh~S 238 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS-VGN---TLVLHQS 238 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc-ccc---hHHHHHH
Confidence 999999887643335566775554 4577999999999999999886532210 000000000 000 0000000
Q ss_pred HHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCC
Q 003315 406 FKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDR-QIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPD 484 (831)
Q Consensus 406 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 484 (831)
--...+|.-...+.+.|+++.|.+.+.+|.-+ ....|+++...+.-. --.+++.+..+-+.-+.+.++- .
T Consensus 239 -------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P 309 (459)
T KOG4340|consen 239 -------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-P 309 (459)
T ss_pred -------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-C
Confidence 01234555556677889999999998888644 234566666655422 2245666666666666666553 4
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 003315 485 IITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLE-PNFVTHNMIIEGLCMGGRVEEAEAFLDGL 546 (831)
Q Consensus 485 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 546 (831)
..||..++-.||++.-++.|-+++.+--..... .+...|+.+=......-..+++.+-++.+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 578888888999998888888887653322111 22333333222222344566666655544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.2e-07 Score=93.66 Aligned_cols=408 Identities=11% Similarity=0.006 Sum_probs=216.0
Q ss_pred HHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcC
Q 003315 125 RILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWS 204 (831)
Q Consensus 125 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 204 (831)
......|+++.|...|.+.+..+|. +...|..-..+|+..|+|++|+.--.+.++..+. .
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-------------------nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w 69 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-------------------NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-W 69 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-------------------ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-h
Confidence 4567789999999999999988554 4456778888999999999999999999888755 6
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH--HHhCCCCCCHHHHHHHH
Q 003315 205 ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLE--MEKAGVTPNAFAYSTCI 282 (831)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--m~~~~~~p~~~~~~~l~ 282 (831)
...|+..+.++.-.|++++|+..|.+-++.. +.|...++.+..++... .. +.+.|.. |.. ++..++.|-
T Consensus 70 ~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~~-~~~~~~~p~~~~-~l~~~p~t~---- 140 (539)
T KOG0548|consen 70 AKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLED--YA-ADQLFTKPYFHE-KLANLPLTN---- 140 (539)
T ss_pred hhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH--HH-hhhhccCcHHHH-HhhcChhhh----
Confidence 7789999999999999999999999998864 45666777777776211 00 0111110 000 001111110
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhhHH---HHHHHHHhcCCHhH-HHHHHHHHHH-CCCCC--------------
Q 003315 283 EGLCMNGMLDLGYELLLKWEEADIPLSAFAYT---VVIRWFCDQNKLEK-AECVLLHMEK-QGVVP-------------- 343 (831)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~-A~~~~~~~~~-~~~~p-------------- 343 (831)
.+... .+.....+.+..+ |-+...|. .++.+.......+. ....-..+.. .+..|
T Consensus 141 -~~~~~----~~~~~~l~~~~~~-p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~ 214 (539)
T KOG0548|consen 141 -YSLSD----PAYVKILEIIQKN-PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDN 214 (539)
T ss_pred -hhhcc----HHHHHHHHHhhcC-cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchh
Confidence 11111 1111111111110 00000000 00000000000000 0000000000 00000
Q ss_pred --------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH
Q 003315 344 --------DVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNK 415 (831)
Q Consensus 344 --------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 415 (831)
-..-...+.+...+..+++.|++-+....+.. .+..-++....++...|...+.+.......+.|.. ..
T Consensus 215 ~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~r 291 (539)
T KOG0548|consen 215 TEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LR 291 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HH
Confidence 01123445666666677777777777766654 24444455555666666666665555554444332 12
Q ss_pred hhHH-------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchH
Q 003315 416 VCYD-------VIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITY 488 (831)
Q Consensus 416 ~~~~-------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 488 (831)
..|+ .+..+|.+.++++.|+..|.+.......|+. ..+....+++........-.++.. ..-.
T Consensus 292 ad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~ 361 (539)
T KOG0548|consen 292 ADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEE 361 (539)
T ss_pred HHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHH
Confidence 2222 2333555566677777777765543322221 122233444444444433322221 1111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcC
Q 003315 489 NVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTG 565 (831)
Q Consensus 489 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g 565 (831)
..-...+.+.|++..|...+.++++.. |.|...|....-+|.+.|.+..|.+--+...+.+|.. |..=+.++....
T Consensus 362 r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk 440 (539)
T KOG0548|consen 362 REKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMK 440 (539)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 112445566777777777777777765 5566777777777777777777777776666666654 222333344445
Q ss_pred CHHHHHHHHHHHHhCC
Q 003315 566 HTKEAFQLFMRLSNQG 581 (831)
Q Consensus 566 ~~~~A~~~~~~~~~~~ 581 (831)
+|++|++.|.+..+.+
T Consensus 441 ~ydkAleay~eale~d 456 (539)
T KOG0548|consen 441 EYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 5666666666655554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.9e-07 Score=83.79 Aligned_cols=325 Identities=11% Similarity=-0.002 Sum_probs=212.6
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 003315 123 IVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFV 202 (831)
Q Consensus 123 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 202 (831)
.+..+.+..+++.+.+++..-.+..|. +......|+.+|-...++..|.+.|+++-...+.
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~p~-------------------~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~ 76 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERSPR-------------------SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE 76 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCcc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH
Confidence 334455566777777777665544332 4456779999999999999999999998876433
Q ss_pred cChhhH-HHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH--HhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 003315 203 WSICSC-NYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKAL--CKKGSMQEAVEVFLEMEKAGVTPNAFAYS 279 (831)
Q Consensus 203 ~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 279 (831)
..-| ..-.+.+.+.+.+..|+++...|... ++...-..-+.+. -..+++..+..+.++.... .+..+.+
T Consensus 77 --~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~i 148 (459)
T KOG4340|consen 77 --LEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQI 148 (459)
T ss_pred --HHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhc
Confidence 3323 22456777889999999999887642 3333222222222 3468888888888876532 3556666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-------------CCH-
Q 003315 280 TCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVV-------------PDV- 345 (831)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------------p~~- 345 (831)
.......+.|+++.|.+-|+...+-+--.....|+.-+ +..+.|+++.|++...+++++|+. ||+
T Consensus 149 n~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr 227 (459)
T KOG4340|consen 149 NLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR 227 (459)
T ss_pred cchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh
Confidence 77777889999999999999998875333445566444 455778999999999999887643 221
Q ss_pred --------------HHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 003315 346 --------------YAYSALISGYCKFGKINKALLLHHEMTSK-GIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMG 410 (831)
Q Consensus 346 --------------~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 410 (831)
..+|.-...+.+.++++.|.+.+..|.-+ ....|+.|+..+.-. -..+++.+..+-+.-++..+
T Consensus 228 svgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 228 SVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred cccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC
Confidence 11233334566889999999998888643 334566666544322 23455666666667777665
Q ss_pred CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHccCChhhHHHHHHHHH
Q 003315 411 FFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQI-VPDVVNYTTMICGYCLQGKLGDALDLFKEMK 477 (831)
Q Consensus 411 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 477 (831)
+ ....||..++-.||+..-++-|-+++.+-...-. -.+...|+.|-....-.-.+++|.+-+..+.
T Consensus 307 P-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 307 P-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred C-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 5 4577888899999999889988888765332211 0133344433222223456666666555543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-06 Score=91.06 Aligned_cols=203 Identities=12% Similarity=0.030 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003315 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQI 196 (831)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 196 (831)
+..|..++..+...|+.+.+...+....+..+... + ........+..+...|++++|...++++
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------~~e~~~~~a~~~~~~g~~~~A~~~~~~~ 69 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARA-T---------------ERERAHVEALSAWIAGDLPKALALLEQL 69 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCC-C---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44455555566666666666555555554433211 0 1122334455567788888888888888
Q ss_pred HHcCCCcChhhHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 003315 197 NRRGFVWSICSCNYFMNQLVE----CGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVT 272 (831)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 272 (831)
++..+. +..++.. ...+.. .+..+.+.+.++.... ..+........+...+...|++++|.+.+++..+.. +
T Consensus 70 l~~~P~-~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p 145 (355)
T cd05804 70 LDDYPR-DLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-P 145 (355)
T ss_pred HHHCCC-cHHHHHH-hHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C
Confidence 877543 4444332 222222 3444555555544111 112223344455567778889999999998888764 4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCh--hhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 273 PNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADI-PLSA--FAYTVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 273 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
.+...+..+..++...|++++|...+++...... +++. ..|..+...+...|++++|..++++....
T Consensus 146 ~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 146 DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 4556777788888889999999998888877532 1222 23556788888899999999999887644
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.99 E-value=0.0001 Score=79.45 Aligned_cols=225 Identities=18% Similarity=0.159 Sum_probs=143.8
Q ss_pred HHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHH--HHHcCChhHHHHHHHHHHHcCCCcC
Q 003315 127 LCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKA--YVSVGMFDEGIDILFQINRRGFVWS 204 (831)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~ 204 (831)
....++++.|++...+++++.|+. .|..++++ +.+.|+.++|..+++.....+.. |
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~---------------------~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D 76 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNA---------------------LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-D 76 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCc---------------------HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-c
Confidence 345678888888888888875541 12233333 46899999999888877666544 8
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003315 205 ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEG 284 (831)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 284 (831)
..+...+-..|.+.++.++|..+|++..... |+......+..+|.+.+++.+-.++--++-+. .+.+...+=.+++.
T Consensus 77 ~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Sl 153 (932)
T KOG2053|consen 77 DLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISL 153 (932)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHH
Confidence 8889999999999999999999999998753 67777777778888888876655544444432 22233333333333
Q ss_pred HHhcC-C---------hhHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHhHHHHHH-HHHHHCCCCCCHHHHHHHH
Q 003315 285 LCMNG-M---------LDLGYELLLKWEEAD-IPLSAFAYTVVIRWFCDQNKLEKAECVL-LHMEKQGVVPDVYAYSALI 352 (831)
Q Consensus 285 ~~~~~-~---------~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~p~~~~~~~li 352 (831)
+...- . ..-|...++.+.+.+ .-.+..-.......+-..|++++|.+++ ....+.-..-+...-+.-+
T Consensus 154 ilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~ 233 (932)
T KOG2053|consen 154 ILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKL 233 (932)
T ss_pred HHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 33211 1 123455556665543 1112222233344455678888888888 3344332333444445566
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCC
Q 003315 353 SGYCKFGKINKALLLHHEMTSKGI 376 (831)
Q Consensus 353 ~~~~~~~~~~~A~~~~~~~~~~~~ 376 (831)
..+...++|.+..++..++...|.
T Consensus 234 dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 234 DLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHhcChHHHHHHHHHHHHhCC
Confidence 777788888888888888877754
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.3e-07 Score=94.35 Aligned_cols=223 Identities=9% Similarity=-0.020 Sum_probs=140.6
Q ss_pred HHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCc
Q 003315 88 VEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGST 167 (831)
Q Consensus 88 ~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (831)
.+..+...|+...|.-+|+.+.+.++ .+.+.|..+..+-...++...|..++++.++.+|.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~------------------ 351 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPT------------------ 351 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc------------------
Confidence 34455566777777777777765543 36777777777777777777777777777777554
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHH-----------HHHHHcCChhHHHHHHHHHH-hcC
Q 003315 168 LLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFM-----------NQLVECGKVDMALAVYQHLK-RLG 235 (831)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~A~~~~~~~~-~~~ 235 (831)
+..+.-.|+..|...|.-.+|+..++.-++..++ |..+. ..+..........++|-++. ..+
T Consensus 352 -NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~ 425 (579)
T KOG1125|consen 352 -NLEALMALAVSYTNEGLQNQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP 425 (579)
T ss_pred -cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC
Confidence 4455667777777777777777777776554322 00000 01111112233444454444 333
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH
Q 003315 236 LSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTV 315 (831)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 315 (831)
..+|+..+..|.-.|--.|++++|++.|+.++... +.|...||-|...+....+.++|+..|++.++.. |--++++..
T Consensus 426 ~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-P~yVR~RyN 503 (579)
T KOG1125|consen 426 TKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-PGYVRVRYN 503 (579)
T ss_pred CCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-CCeeeeehh
Confidence 33566666666666777777777777777777653 3455677777777777777777777777777763 334556666
Q ss_pred HHHHHHhcCCHhHHHHHHHHHH
Q 003315 316 VIRWFCDQNKLEKAECVLLHME 337 (831)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~~ 337 (831)
|.-.|...|.+++|.+.|-..+
T Consensus 504 lgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 504 LGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred hhhhhhhhhhHHHHHHHHHHHH
Confidence 7777777777777777766554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.1e-06 Score=84.79 Aligned_cols=221 Identities=14% Similarity=0.092 Sum_probs=163.7
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHH
Q 003315 96 KEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDA 175 (831)
Q Consensus 96 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (831)
+++..|..+|+.+... .++.++|+.++.++++..|. +..+|..
T Consensus 34 ~~~~~a~~~~ra~l~~------------------~e~serAL~lt~~aI~lnP~-------------------~ytaW~~ 76 (320)
T PLN02789 34 PEFREAMDYFRAVYAS------------------DERSPRALDLTADVIRLNPG-------------------NYTVWHF 76 (320)
T ss_pred HHHHHHHHHHHHHHHc------------------CCCCHHHHHHHHHHHHHCch-------------------hHHHHHH
Confidence 4677777777766543 34566777788888877554 4457777
Q ss_pred HHHHHHHcC-ChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCCh--hHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003315 176 MIKAYVSVG-MFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKV--DMALAVYQHLKRLGLSLNEYTYVIVIKALCK 252 (831)
Q Consensus 176 l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (831)
-..++...| .+++++..++++++.+++ +..+++....++.+.++. ++++..++.+++.. +.|..+|+....++.+
T Consensus 77 R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~ 154 (320)
T PLN02789 77 RRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRT 154 (320)
T ss_pred HHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 777777777 689999999999998866 667788877777777763 67888998888765 5678899998888999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCh----hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc--
Q 003315 253 KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMN---GML----DLGYELLLKWEEADIPLSAFAYTVVIRWFCDQ-- 323 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 323 (831)
.|+++++++.++++++.+ ..|..+|+....++.+. |.. ++......+++... |.+...|+.+...+...
T Consensus 155 l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~ 232 (320)
T PLN02789 155 LGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKE 232 (320)
T ss_pred hhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCc
Confidence 999999999999999876 44666777776665554 222 45677777777765 67788888888877763
Q ss_pred --CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003315 324 --NKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKF 358 (831)
Q Consensus 324 --g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 358 (831)
++..+|.+.+.+..+.++. +......|++.|+..
T Consensus 233 ~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~ 268 (320)
T PLN02789 233 ALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEG 268 (320)
T ss_pred ccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhh
Confidence 3456688888887765433 667777888888753
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.7e-05 Score=94.83 Aligned_cols=56 Identities=23% Similarity=0.312 Sum_probs=31.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhC----CCC-----ChHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003315 526 IIEGLCMGGRVEEAEAFLDGLKGK----CLE-----NYSAMINGYCKTGHTKEAFQLFMRLSNQG 581 (831)
Q Consensus 526 l~~~~~~~g~~~~a~~~~~~~~~~----~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 581 (831)
+..++...|+.++|...+++.... +.. ....+..++...|+.++|...+.++.+..
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 344455556666665555554332 000 13334556667777777777777776654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.5e-05 Score=93.46 Aligned_cols=375 Identities=11% Similarity=-0.022 Sum_probs=198.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 003315 174 DAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKK 253 (831)
Q Consensus 174 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (831)
...+..+...|++.+|...+..+... ..-..........+...|+.+.+..+++.+.......++.........+...
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence 34455566666666666544332111 0001112222334455666666666665542211112222233344445566
Q ss_pred CChHHHHHHHHHHHhCC--C----CCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----hhhHHHHHHHHH
Q 003315 254 GSMQEAVEVFLEMEKAG--V----TPNA--FAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLS----AFAYTVVIRWFC 321 (831)
Q Consensus 254 g~~~~A~~~~~~m~~~~--~----~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~ 321 (831)
|++++|...++.+.+.- . .+.. .....+...+...|++++|...+++..+.....+ ....+.+...+.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 77777777776654320 0 0111 1222233445567777777777777665311111 123445556666
Q ss_pred hcCCHhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC--C-CHhhHHHHHHH
Q 003315 322 DQNKLEKAECVLLHMEKQ----GV-VPDVYAYSALISGYCKFGKINKALLLHHEMTSK----GIK--T-NCGVLSVILKG 389 (831)
Q Consensus 322 ~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~ll~~ 389 (831)
..|++++|...+++.... |. .+...++..+...+...|+++.|...+++.... +.. + ....+..+...
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 777777777777666532 11 111234445566677777777777776665431 211 1 12233344455
Q ss_pred HHhcCChHHHHHHHHHHHHC----CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChh--hH--HHHHHH
Q 003315 390 LCQKGMASATIKQFLEFKDM----GFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDR--QIVPDVV--NY--TTMICG 459 (831)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~--~~--~~li~~ 459 (831)
+...|++++|...+.+.... +.......+..+...+...|+.++|.+.++..... ....... .. ...+..
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 66667777777777665432 11112334455666777888888888877776432 1110110 10 112233
Q ss_pred HHccCChhhHHHHHHHHHHcCCCCCc---chHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHH
Q 003315 460 YCLQGKLGDALDLFKEMKEMGHKPDI---ITYNVLAGAFAQYGAVQKAFDLLNYMKRH----GLEP-NFVTHNMIIEGLC 531 (831)
Q Consensus 460 ~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~ 531 (831)
+...|+.+.|...+............ ..+..+..++...|++++|...++..... +... ...+...+..++.
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 45578888888887665432111110 11345666777888888888888877642 2222 1235556666778
Q ss_pred cCCCHHHHHHHHHHhhhCC
Q 003315 532 MGGRVEEAEAFLDGLKGKC 550 (831)
Q Consensus 532 ~~g~~~~a~~~~~~~~~~~ 550 (831)
+.|+.++|...+.+.....
T Consensus 743 ~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 743 QQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 8889888888888876553
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00062 Score=73.78 Aligned_cols=516 Identities=13% Similarity=0.081 Sum_probs=284.4
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHH
Q 003315 95 RKEPKIALSFFEQLKRSGFSHNLCTYAAI--VRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRL 172 (831)
Q Consensus 95 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (831)
.+++..|+.-...+.+. .|+.. |..+ +-.+.+.|+.++|..+++..-.. +. + +..+
T Consensus 22 ~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~-~~-----------------~-D~~t 79 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGL-KG-----------------T-DDLT 79 (932)
T ss_pred hHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccC-CC-----------------C-chHH
Confidence 45889999999998765 23332 2333 33467899999998666543222 11 1 5567
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003315 173 SDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK 252 (831)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (831)
...+-..|...|++++|..+|+++.+.. |+......+..+|++.+.+.+-.++=-++-+ .++.++..+..++....+
T Consensus 80 Lq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 80 LQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHH
Confidence 7889999999999999999999999875 4577778888899998887664444444333 245567777777777665
Q ss_pred cCC----------hHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHH-HHHHHCCCCCChhhHHHHHHHH
Q 003315 253 KGS----------MQEAVEVFLEMEKAG-VTPNAFAYSTCIEGLCMNGMLDLGYELL-LKWEEADIPLSAFAYTVVIRWF 320 (831)
Q Consensus 253 ~g~----------~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~ 320 (831)
.-. ..-|.+.++.+.+.+ ---+..-.......+...|++++|.+++ ....+.-.+.+...-+.-+..+
T Consensus 157 s~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dll 236 (932)
T KOG2053|consen 157 SIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLL 236 (932)
T ss_pred hccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 321 234666677776653 2222333334445677889999999999 4444444445556666778888
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----------------HhcCChHHHHHHHHHHHhCCCCCCHhhHH
Q 003315 321 CDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGY----------------CKFGKINKALLLHHEMTSKGIKTNCGVLS 384 (831)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~----------------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 384 (831)
...+++.+..++-.++...|.+ | |...++.+ ...+..+...+..++......+...-...
T Consensus 237 k~l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~l 312 (932)
T KOG2053|consen 237 KLLNRWQELFELSSRLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARL 312 (932)
T ss_pred HHhcChHHHHHHHHHHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHH
Confidence 8999999999999999988654 3 33322211 11223333344333333321111111111
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-------hHHHHH
Q 003315 385 VILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVV-------NYTTMI 457 (831)
Q Consensus 385 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li 457 (831)
-+..-+..-|+.++..-.|-.-... ..+|..=+..|...=..+.-..++...... .++.. .+...+
T Consensus 313 el~kr~~~~gd~ee~~~~y~~kfg~-----kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l 385 (932)
T KOG2053|consen 313 ELDKRYKLIGDSEEMLSYYFKKFGD-----KPCCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVL 385 (932)
T ss_pred HHHHHhcccCChHHHHHHHHHHhCC-----CcHhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHH
Confidence 1222223456666655444322111 111111122222222233333333332211 01111 011111
Q ss_pred HHHHccC-----ChhhHHHHHHHHH---HcC------CCCCcch---------HHHHHHHHHhcCCHH---HHHHHHHHH
Q 003315 458 CGYCLQG-----KLGDALDLFKEMK---EMG------HKPDIIT---------YNVLAGAFAQYGAVQ---KAFDLLNYM 511 (831)
Q Consensus 458 ~~~~~~g-----~~~~A~~~~~~~~---~~~------~~~~~~~---------~~~l~~~~~~~g~~~---~a~~~~~~~ 511 (831)
..-.-.| .-+....+++++. +.| .-|...+ .+.+++.+.+.++.. +|+-+++..
T Consensus 386 ~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~g 465 (932)
T KOG2053|consen 386 LLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENG 465 (932)
T ss_pred HHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 1111112 1233333343332 222 2233322 356677888887765 455555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC--CChHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCCccc
Q 003315 512 KRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCL--ENYSAMI-NGYCKTGHTKEAFQLFMRLSNQGVLVKKSS 588 (831)
Q Consensus 512 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 588 (831)
.... +.|..+--.+|..|+-.|-+..|.++++.+.-+.. ++...++ .-+...|++..+...++.....--. +..-
T Consensus 466 lt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy~~-~~kE 543 (932)
T KOG2053|consen 466 LTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFYDS-SLKE 543 (932)
T ss_pred hhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhh-hhhh
Confidence 5543 55666667788889888999999999987765433 3344433 3344567777777777665443211 1222
Q ss_pred HHHHHHHHHhcCCHHHHHHHH---HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 589 CNKLITNLLILRDNNNALKLF---KTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLV 648 (831)
Q Consensus 589 ~~~l~~~~~~~~~~~~a~~~~---~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 648 (831)
...++..-.+.|.+.+..++. +++..........+-+..++.++..++.++-...+..+.
T Consensus 544 ~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 544 TPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred hHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 233444445666666655443 333322222233344556677777787777766666554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.4e-06 Score=81.75 Aligned_cols=216 Identities=14% Similarity=-0.006 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcC-ChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECG-KVDMALAVYQHLKRLGLSLNEYTYVIVIKA 249 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (831)
.++..+-..+...++.++|+..+.++++.++. +..+++....++...| .+++++..++++.+.. +.+..+|+.....
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 34555555666788999999999999998755 7778888888888888 5799999999999765 4566678766666
Q ss_pred HHhcCCh--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---C
Q 003315 250 LCKKGSM--QEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQ---N 324 (831)
Q Consensus 250 ~~~~g~~--~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g 324 (831)
+.+.|+. ++++..++++.+.. +-|..+|+...-++...|+++++++.+.++++.+ +.+..+|+.....+.+. |
T Consensus 116 l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccc
Confidence 6667763 67899999998875 4577889988888999999999999999999987 55677777766665544 2
Q ss_pred CH----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 003315 325 KL----EKAECVLLHMEKQGVVPDVYAYSALISGYCKF----GKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQ 392 (831)
Q Consensus 325 ~~----~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 392 (831)
.+ +++.+...+++...+. |...|+-+..++... +...+|.+.+.+....++ .+...+..++..++.
T Consensus 194 ~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred cccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 22 4567777677776554 777888888777763 344667777777666432 245556666666654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.9e-06 Score=87.91 Aligned_cols=257 Identities=10% Similarity=-0.007 Sum_probs=179.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG 254 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (831)
..+.-+.+.|++.+|.-.|+.+++.+|. +..+|..|+..-...++-..|+..+++.++.. +.|......|.-.|...|
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhh
Confidence 5566677888888888888888888755 88888888888888888888888888888764 445667777777888888
Q ss_pred ChHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCChhhHHHHHHHHHhcCC
Q 003315 255 SMQEAVEVFLEMEKAGVT--------PNAFAYSTCIEGLCMNGMLDLGYELLLKWEE-ADIPLSAFAYTVVIRWFCDQNK 325 (831)
Q Consensus 255 ~~~~A~~~~~~m~~~~~~--------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~ 325 (831)
.-.+|++.++.-+....+ ++...-.. ..+.....+....++|-++.. .+..+|+.+...|.-.|--.|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 888888888877553210 00000000 111222233444455555443 3444788888888888888999
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCChHHHHHHHH
Q 003315 326 LEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNC-GVLSVILKGLCQKGMASATIKQFL 404 (831)
Q Consensus 326 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~ 404 (831)
+++|.+.|+..+...+. |...||.|...+....+.++|+..|++.++. +|+- ....-|.-.|...|.+++|.+.|-
T Consensus 446 fdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 99999999998887554 7788999999998888999999999998874 4443 344556677888899999988887
Q ss_pred HHHHC---------CCCcCHhhHHHHHHHHHhcCCHHHHHHHH
Q 003315 405 EFKDM---------GFFLNKVCYDVIVDSLCKLGEVEKAMILF 438 (831)
Q Consensus 405 ~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 438 (831)
..+.. ...++...|.+|=.++.-.++.|.+.+..
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 65432 12234567777777777777776554443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.6e-07 Score=91.23 Aligned_cols=163 Identities=17% Similarity=0.149 Sum_probs=118.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccc
Q 003315 626 KLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKIN 705 (831)
Q Consensus 626 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 705 (831)
....++...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ +..|.. ..-+..++..+.
T Consensus 107 ~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~~-l~qLa~awv~l~ 177 (290)
T PF04733_consen 107 LAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDSI-LTQLAEAWVNLA 177 (290)
T ss_dssp HHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHH-HHHHHHHHHHHH
Confidence 3345566788888888877542 3667777788899999999999999999986 344543 333444444322
Q ss_pred cCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003315 706 LKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCG 785 (831)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~ 785 (831)
. +.+.+.+|..+|+++.+. ..+++.+.|.+..++...|++++|.+++.+..+.. +-|+.+...++.+
T Consensus 178 ~-----------g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~ 244 (290)
T PF04733_consen 178 T-----------GGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVC 244 (290)
T ss_dssp H-----------TTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHH
T ss_pred h-----------CchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHH
Confidence 1 235688999999998753 56788899999999999999999999999998753 3357788888888
Q ss_pred HHhcCCH-HHHHHHHHHHHhCCCCCCHH
Q 003315 786 YLAKGDL-DRAIALVDEMSVKGIQGDDY 812 (831)
Q Consensus 786 ~~~~g~~-~~A~~~~~~~~~~g~~pd~~ 812 (831)
....|+. +.+.++++++.. ..|+..
T Consensus 245 ~~~~gk~~~~~~~~l~qL~~--~~p~h~ 270 (290)
T PF04733_consen 245 SLHLGKPTEAAERYLSQLKQ--SNPNHP 270 (290)
T ss_dssp HHHTT-TCHHHHHHHHHCHH--HTTTSH
T ss_pred HHHhCCChhHHHHHHHHHHH--hCCCCh
Confidence 8888887 778889999887 567654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.8e-06 Score=78.35 Aligned_cols=165 Identities=18% Similarity=0.052 Sum_probs=137.5
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003315 204 SICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIE 283 (831)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 283 (831)
|... ..+-..+.-.|+-+....+....... .+.|......++....+.|++..|+..|+++.... ++|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 4444 56677788888888888888776543 24566666778889999999999999999998765 789999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 003315 284 GLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINK 363 (831)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 363 (831)
+|.+.|++++|..-|.+..+.. +-++...+.+...+.-.|+++.|+.++......+.. |..+-..+..+....|+++.
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHH
Confidence 9999999999999999999884 567888899999999999999999999999887544 77777788888899999999
Q ss_pred HHHHHHHHHh
Q 003315 364 ALLLHHEMTS 373 (831)
Q Consensus 364 A~~~~~~~~~ 373 (831)
|..+...-..
T Consensus 221 A~~i~~~e~~ 230 (257)
T COG5010 221 AEDIAVQELL 230 (257)
T ss_pred HHhhcccccc
Confidence 9988766544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.1e-07 Score=88.67 Aligned_cols=81 Identities=15% Similarity=0.152 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH-HHHHHHHH
Q 003315 602 NNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCL-REARDVFN 680 (831)
Q Consensus 602 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~ 680 (831)
+.+|..+|+++... ..++..+.+.+..+....|++++|.+++.+..+.+.. |+.+...++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 33444444443322 2344555555555555556666666555555544333 444444555555555555 44445555
Q ss_pred HHHH
Q 003315 681 DMKQ 684 (831)
Q Consensus 681 ~m~~ 684 (831)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 5544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00065 Score=69.26 Aligned_cols=426 Identities=12% Similarity=0.099 Sum_probs=212.6
Q ss_pred CCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHH
Q 003315 165 GSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYV 244 (831)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 244 (831)
.++.+..+|+.|++-+... -++++.+.|+++...- +.....|..-+....+.++++.++.+|.+-+.. ..+...|.
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~ 90 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWK 90 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHH
Confidence 3456788999999977666 9999999999988763 446777888899999999999999999998754 35677777
Q ss_pred HHHHHHHh-cCCh----HHHHHHHHHHHh-CCCCCCH-HHHHHHH---HH------HHhcCChhHHHHHHHHHHHCCCCC
Q 003315 245 IVIKALCK-KGSM----QEAVEVFLEMEK-AGVTPNA-FAYSTCI---EG------LCMNGMLDLGYELLLKWEEADIPL 308 (831)
Q Consensus 245 ~l~~~~~~-~g~~----~~A~~~~~~m~~-~~~~p~~-~~~~~l~---~~------~~~~~~~~~a~~~~~~~~~~~~~~ 308 (831)
.-+.--.+ .|+. +...+.|+-..+ .|+.+-. ..|+..+ .. +..+.+.+...++|++++..-+..
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 66654332 2333 233444544433 4544332 2333333 22 333445566777777777642111
Q ss_pred ChhhHH------HH-----HHHHH--hcCCHhHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCChHH--HHHHHHHH
Q 003315 309 SAFAYT------VV-----IRWFC--DQNKLEKAECVLLHMEK--QGVVPDVYAYSALISGYCKFGKINK--ALLLHHEM 371 (831)
Q Consensus 309 ~~~~~~------~l-----~~~~~--~~g~~~~A~~~~~~~~~--~~~~p~~~~~~~li~~~~~~~~~~~--A~~~~~~~ 371 (831)
=...|+ .= ++-++ +...+-.|.++++++.. .|......+ .-..|--++ ..+++...
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n~ 243 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKNW 243 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHHH
Confidence 111111 11 11111 22345666666666643 222111111 000111111 11111111
Q ss_pred H----hCCCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHH-HHCCCCcCHhh-----HHHHHHHHHhcCC-------HHH
Q 003315 372 T----SKGIK-TNCGVLSVILKGLCQKGMASATIKQFLEF-KDMGFFLNKVC-----YDVIVDSLCKLGE-------VEK 433 (831)
Q Consensus 372 ~----~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~-----~~~l~~~~~~~g~-------~~~ 433 (831)
+ +++.. -+...... ...-.+++. .-.+..|+... +....+.+...|+ -++
T Consensus 244 I~wEksNpL~t~~~~~~~~------------Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e 311 (656)
T KOG1914|consen 244 IKWEKSNPLRTLDGTMLTR------------RVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDE 311 (656)
T ss_pred HHHHhcCCcccccccHHHH------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHH
Confidence 1 11111 00000000 000000100 00011111000 0000111111221 345
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHH---HccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 003315 434 AMILFKEMKDRQIVPDVVNYTTMICGY---CLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNY 510 (831)
Q Consensus 434 A~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 510 (831)
+..+++.....-...+..+|..+..-- ....+.+.....++++......--..+|...+..-.+..-...|..+|.+
T Consensus 312 ~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~k 391 (656)
T KOG1914|consen 312 AASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKK 391 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHH
Confidence 555555544322222333333332211 11113445555555554432222334555666666666666777777777
Q ss_pred HHHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-
Q 003315 511 MKRHGLEP-NFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVK- 585 (831)
Q Consensus 511 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~- 585 (831)
+.+.+..+ ++.++++++..+| .++.+.|.++|+--.+.-++. -...+..+...|+-..+..+|++....+..++
T Consensus 392 aR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k 470 (656)
T KOG1914|consen 392 AREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK 470 (656)
T ss_pred HhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh
Confidence 77655544 5556666665443 456666777776655543333 34455556666777777777777776643333
Q ss_pred -cccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 586 -KSSCNKLITNLLILRDNNNALKLFKTMIT 614 (831)
Q Consensus 586 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 614 (831)
..+|..++.--..-|+...+.++-+++..
T Consensus 471 s~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 471 SKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 35677777777777888877777766654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.5e-06 Score=83.44 Aligned_cols=187 Identities=17% Similarity=0.075 Sum_probs=132.5
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCc--ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChh---
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVW--SICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEY--- 241 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--- 241 (831)
+..+..+..++..+...|++++|+..|++++...+.. ...++..+..++...|++++|...|+++.+.. +.+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHH
Confidence 4466788899999999999999999999998876431 12466788899999999999999999998754 22222
Q ss_pred hHHHHHHHHHhc--------CChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhh
Q 003315 242 TYVIVIKALCKK--------GSMQEAVEVFLEMEKAGVTPNAF-AYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFA 312 (831)
Q Consensus 242 ~~~~l~~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 312 (831)
++..+...+.+. |++++|.+.|+++.+. .|+.. .+..+..... ... .. ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~--------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RL--------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HH--------HHH
Confidence 455556666554 7889999999999876 34432 2222211100 000 00 011
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 313 YTVVIRWFCDQNKLEKAECVLLHMEKQGVV-P-DVYAYSALISGYCKFGKINKALLLHHEMTSK 374 (831)
Q Consensus 313 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 374 (831)
...+...+.+.|++++|...++...+..+. | ....+..+..++.+.|++++|...++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 235667788899999999999998876331 2 3567888889999999999999988887765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.3e-06 Score=93.42 Aligned_cols=167 Identities=14% Similarity=0.054 Sum_probs=130.0
Q ss_pred ccCChhHHHHHHHHHH--hCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHH
Q 003315 94 LRKEPKIALSFFEQLK--RSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTR 171 (831)
Q Consensus 94 ~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (831)
..+..+.+.+.+-.+. -+.+.+++..+..++++..+.|.+++|..+++.+++..|+ +..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-------------------~~~ 121 (694)
T PRK15179 61 RHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-------------------SSE 121 (694)
T ss_pred HhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-------------------cHH
Confidence 3344444444333332 2335778999999999999999999999999998888665 566
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC 251 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (831)
+...++..+.+.+++++|+..+++++..++. +......+..++.+.|++++|..+|+++...+ +.+..++..+...+.
T Consensus 122 a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~ 199 (694)
T PRK15179 122 AFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLT 199 (694)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 7788899999999999999999999988755 77788888889999999999999999988743 445788888888999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003315 252 KKGSMQEAVEVFLEMEKAGVTPNAFAYSTCI 282 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 282 (831)
+.|+.++|...|++..+.. .|....|+.++
T Consensus 200 ~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 200 RRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 9999999999999988753 45555555544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.9e-06 Score=76.22 Aligned_cols=160 Identities=14% Similarity=0.037 Sum_probs=130.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 003315 174 DAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKK 253 (831)
Q Consensus 174 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (831)
..+...+...|+-+.+..+..+.....+. +....+..+....+.|++..|+..|.+..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 56777788888888888888876655433 66677778888999999999999999988754 67888999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 003315 254 GSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVL 333 (831)
Q Consensus 254 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 333 (831)
|+++.|...|.+..+.- .-+...++.+.-.+.-.|+++.|..++....... +.+..+-..+.......|++++|+++-
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999999999988863 3355677888888889999999999998888775 457778888888899999999998887
Q ss_pred HHHH
Q 003315 334 LHME 337 (831)
Q Consensus 334 ~~~~ 337 (831)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 6544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.5e-06 Score=80.03 Aligned_cols=65 Identities=11% Similarity=-0.068 Sum_probs=36.7
Q ss_pred ChHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHcCCChhhHHHHHHHHHHhcC
Q 003315 83 NTREVVEKLYSLRKEPKIALSFFEQLKRSGFSHNL---CTYAAIVRILCCCGWQKKLESMLLELVRKKT 148 (831)
Q Consensus 83 ~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 148 (831)
+.....+..+...|+++.|...|+.+...... ++ ..+..++.++...|++++|...+..+++..|
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p 101 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPF-SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP 101 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc
Confidence 33334444555667777777777766544221 22 3445556666666666666666666665533
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.6e-08 Score=59.31 Aligned_cols=32 Identities=31% Similarity=0.823 Sum_probs=20.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003315 736 GIRPDVISYTVLIAKLCNTQNLEDGITVFNEI 767 (831)
Q Consensus 736 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 767 (831)
|+.||..+||++|.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45666666666666666666666666666655
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.0017 Score=66.37 Aligned_cols=421 Identities=11% Similarity=0.097 Sum_probs=235.1
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 003315 237 SLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVV 316 (831)
Q Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 316 (831)
|-|+.+|+.|++-+... -++++.+.++++... .+-....|..-|..-.+.++++..+.+|.+.+..-+ +...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHH
Confidence 56788888888776544 888888888888753 234456788888888888888888888888877643 35555555
Q ss_pred HHHHHh-cCCHhH----HHHHHHHHHH-CCCCCC-HHHHHHHHHH---------HHhcCChHHHHHHHHHHHhCCCCCCH
Q 003315 317 IRWFCD-QNKLEK----AECVLLHMEK-QGVVPD-VYAYSALISG---------YCKFGKINKALLLHHEMTSKGIKTNC 380 (831)
Q Consensus 317 ~~~~~~-~g~~~~----A~~~~~~~~~-~~~~p~-~~~~~~li~~---------~~~~~~~~~A~~~~~~~~~~~~~~~~ 380 (831)
+.--.+ .|+... ..+.|+-... -|+++- ...|+..+.- |..+.+++...+++++++...+.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~--- 169 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH--- 169 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc---
Confidence 543222 233222 2233333332 343322 2234444332 23344555566666666554222
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCChh-------
Q 003315 381 GVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKD--RQIVPDVV------- 451 (831)
Q Consensus 381 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~------- 451 (831)
++++..+-|..... ..|..+-..++. .+...+..|.++++++.. +|......
T Consensus 170 --------------nlEkLW~DY~~fE~---~IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T 230 (656)
T KOG1914|consen 170 --------------NLEKLWKDYEAFEQ---EINIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGT 230 (656)
T ss_pred --------------cHHHHHHHHHHHHH---HHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Confidence 12222221111111 112222111111 123345666666666542 22211111
Q ss_pred --------hHHHHHHHHHccC------Ch--hhHHHHHHHHH-HcCCCCCcch----HHHH-HHHHHhcCC-------HH
Q 003315 452 --------NYTTMICGYCLQG------KL--GDALDLFKEMK-EMGHKPDIIT----YNVL-AGAFAQYGA-------VQ 502 (831)
Q Consensus 452 --------~~~~li~~~~~~g------~~--~~A~~~~~~~~-~~~~~~~~~~----~~~l-~~~~~~~g~-------~~ 502 (831)
.|..+|..=..++ .. ....-.+++.+ -.+..|+... |..- -+.+...|+ .+
T Consensus 231 ~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~ 310 (656)
T KOG1914|consen 231 KDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTD 310 (656)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHH
Confidence 1333332211111 00 01111222211 1122222211 1110 112223333 45
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHhhhC---CCC-ChHHHHHHHHhcCCHHHHHHHHH
Q 003315 503 KAFDLLNYMKRHGLEPNFVTHNMIIEGLCMG---GRVEEAEAFLDGLKGK---CLE-NYSAMINGYCKTGHTKEAFQLFM 575 (831)
Q Consensus 503 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~---~~~-~~~~l~~~~~~~g~~~~A~~~~~ 575 (831)
++..+++..+..-...+..+|..+...-... ...+.....++++... ++. .|-.++..-.+..-.+.|..+|.
T Consensus 311 e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ 390 (656)
T KOG1914|consen 311 EAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFK 390 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHH
Confidence 6666666665543333444554444321111 1244444555555433 333 27788888888889999999999
Q ss_pred HHHhCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003315 576 RLSNQGVLV-KKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTP 654 (831)
Q Consensus 576 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 654 (831)
++.+.+..+ +..+...++.-+ -.++..-|..+|+--.+.- ..++.--...++-+...++-+.|+.+|+..+..++.|
T Consensus 391 kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 391 KAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred HHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence 999998777 445555555544 4688999999998777642 3444555667888999999999999999999886665
Q ss_pred C--HhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003315 655 H--LVTYTMMIHGYCKINCLREARDVFNDMKQR 685 (831)
Q Consensus 655 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 685 (831)
| ...|..++.--..-|+...++++-+++...
T Consensus 469 ~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 469 DKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 5 478999999999999999999998887653
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.2e-05 Score=75.09 Aligned_cols=128 Identities=13% Similarity=0.141 Sum_probs=99.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 003315 564 TGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGAL-CQAEE--MEQA 640 (831)
Q Consensus 564 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A 640 (831)
.++.+++...+++..+.++. +...|..++..+...|++++|...++++.+.. +.+..++..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45667777777777777655 77788888888888888888888888888765 44677777888764 66677 5899
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003315 641 QLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYT 695 (831)
Q Consensus 641 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 695 (831)
.++++++++.++. +...+..+...+.+.|++++|+..|+++++. ..|+...+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~~ 182 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNRTQ 182 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHHH
Confidence 9999999988665 7888899999999999999999999999875 445544433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.9e-06 Score=78.23 Aligned_cols=125 Identities=9% Similarity=0.039 Sum_probs=91.8
Q ss_pred CCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHH
Q 003315 130 CGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCN 209 (831)
Q Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 209 (831)
.++.+++...+...++..|+ +...|..++..|...|++++|+..|+++.+.++. +...+.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-------------------~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~ 111 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-------------------NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYA 111 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 34455666666776666444 5667888888888888888888888888887754 777777
Q ss_pred HHHHHH-HHcCC--hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 003315 210 YFMNQL-VECGK--VDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAF 276 (831)
Q Consensus 210 ~l~~~~-~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 276 (831)
.+..++ ...|+ .++|.+++++.++.+ +.++.++..+...+.+.|++++|+..|+++.+.. +|+..
T Consensus 112 ~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~ 179 (198)
T PRK10370 112 ALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVN 179 (198)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcc
Confidence 777764 56666 488888888888765 4466777888888888888888888888887764 44443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.1e-06 Score=73.11 Aligned_cols=96 Identities=15% Similarity=-0.064 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC 251 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (831)
.+..++..+...|++++|+..|++++..++. +..++..+..++.+.|++++|...|+...+.. +.++..+..+...+.
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 4556788888899999999999998888744 77888888889999999999999999988764 567788888888888
Q ss_pred hcCChHHHHHHHHHHHhC
Q 003315 252 KKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~ 269 (831)
+.|++++|++.|+...+.
T Consensus 104 ~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 899999999999988876
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=3e-06 Score=74.64 Aligned_cols=108 Identities=15% Similarity=0.065 Sum_probs=56.4
Q ss_pred HHHHHhhhCCCCChHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003315 541 AFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPS 620 (831)
Q Consensus 541 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 620 (831)
.++++..+.+|..+..++..+.+.|++++|...|+++....+. +...+..++.++...|++++|...|+++...+ +.+
T Consensus 14 ~~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~ 91 (144)
T PRK15359 14 DILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASH 91 (144)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence 4455555555555444555555566666666666655555433 44444555555555555555555555555443 234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003315 621 KSMYDKLIGALCQAEEMEQAQLVFNVLVDK 650 (831)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 650 (831)
...+..++.++...|+.++|...|+.+++.
T Consensus 92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444445555555555555555555555543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=5e-06 Score=87.19 Aligned_cols=217 Identities=18% Similarity=0.227 Sum_probs=126.5
Q ss_pred CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHH
Q 003315 412 FLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVL 491 (831)
Q Consensus 412 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 491 (831)
+|-...-..+...+...|-...|..++++.. .|...|.+|+..|+..+|..+..+..++ +||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3344445566777778888888888887654 4566777788888888888888777763 5677777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC---ChHHHHHHHHhcCCHH
Q 003315 492 AGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLE---NYSAMINGYCKTGHTK 568 (831)
Q Consensus 492 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~ 568 (831)
.+......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+|- +|-.++.+..+.++++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 77766666677777776654322 1112222233467777777777765555443 3666666666777777
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 569 EAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLV 648 (831)
Q Consensus 569 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 648 (831)
.|.+.|.......+. +...|+.+..++.+.++..+|...++++.+.+ .-+..+|...+.+..+.|.+++|.+.+.++.
T Consensus 537 ~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 777777666655433 34444444444444444444444444444443 2222233333333344444444444444443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-07 Score=58.14 Aligned_cols=34 Identities=44% Similarity=0.911 Sum_probs=28.0
Q ss_pred CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003315 650 KGLTPHLVTYTMMIHGYCKINCLREARDVFNDMK 683 (831)
Q Consensus 650 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 683 (831)
+|+.||..+||+||++||+.|+.++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888873
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.7e-05 Score=84.51 Aligned_cols=163 Identities=15% Similarity=0.052 Sum_probs=126.5
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
+.++.++..|+.+..+.|.+++|..+++.+.+..+. +..+...++.++.+.+++++|+..+++..... +.+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 335778889999999999999999999999988755 77778888899999999999999999988865 4566777888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKL 326 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 326 (831)
..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+.. .+....|+.++. ++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HH
Confidence 888889999999999999998743 3447788888899999999999999999988763 333444444432 33
Q ss_pred hHHHHHHHHHHHC
Q 003315 327 EKAECVLLHMEKQ 339 (831)
Q Consensus 327 ~~A~~~~~~~~~~ 339 (831)
..-...++.+.-.
T Consensus 233 ~~~~~~~~~~~~~ 245 (694)
T PRK15179 233 NADLAALRRLGVE 245 (694)
T ss_pred HHHHHHHHHcCcc
Confidence 3344455555433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00014 Score=81.44 Aligned_cols=171 Identities=13% Similarity=-0.019 Sum_probs=108.8
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
+....++..|+..|...|++++|+.+.+..++..+. ....|..++..+...++.+.+..+ .+..
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~------------- 91 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLID------------- 91 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhh-------------
Confidence 446678899999999999999999999988877543 555555555577777776665555 3222
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKL 326 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 326 (831)
......++.-...+...|.+. ..+..++-.+..+|-+.|+.+++..+++++++.+ +.++.+.|.++..|... ++
T Consensus 92 --~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 92 --SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred --hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 222233333333333344433 2233456666677777777777777777777766 56667777777777766 77
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 327 EKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSK 374 (831)
Q Consensus 327 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 374 (831)
++|++++.+.... |...+++..+.+++.++...
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 7777766666543 44455666666666666554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.5e-05 Score=84.06 Aligned_cols=205 Identities=12% Similarity=0.008 Sum_probs=144.6
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-CCC---cChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRR-GFV---WSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYV 244 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 244 (831)
+.-.|...+.-....++.+.|.+++++++.. ++. -....|.++++....-|.-+...++|++..+. ...-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 4556777777777888888888888887653 111 12335666777777777777778888887763 22344677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHh
Q 003315 245 IVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPL--SAFAYTVVIRWFCD 322 (831)
Q Consensus 245 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 322 (831)
.|...|.+.+.+++|-++++.|.+. +......|...+..+.++++-+.|..++.++++.- |- ........+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhh
Confidence 7888888888888888888888774 23456677888888888888888888888777652 22 23444455556667
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 003315 323 QNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKT 378 (831)
Q Consensus 323 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~ 378 (831)
.|+-+.++.+|+.....-++ -...|+..|+.=.++|+.+.+..+|++....++.|
T Consensus 1613 ~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 78888888888888776444 56678888888888888888888888887776654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00013 Score=82.21 Aligned_cols=215 Identities=13% Similarity=0.035 Sum_probs=133.3
Q ss_pred HHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc-CCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 193 LFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL-GLS---LNEYTYVIVIKALCKKGSMQEAVEVFLEMEK 268 (831)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 268 (831)
|++.+... +.+...|-..+.-....++.++|++++++.+.. ++. --...|.++++.-...|.-+...++|+++.+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 34444443 224555666677777777888888888777642 111 1123677777777777777777788887776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHH
Q 003315 269 AGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVP-DVYA 347 (831)
Q Consensus 269 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~ 347 (831)
. ...-..|..|...|.+.+.+++|-++++.|.+. +......|..++..+.++.+-+.|..++.+..+.-+.. ....
T Consensus 1526 y--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 Y--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred h--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 4 223345677777777888888888888887776 23566777777777777777777777777776642211 1223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003315 348 YSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFF 412 (831)
Q Consensus 348 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 412 (831)
....+..-.+.|+.+++..+|+..+...++ -...|+.++..-.+.|+.+.+..+|+.+...++.
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 344555556677777777777777665433 2334555555555555555555555555554443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.5e-05 Score=83.55 Aligned_cols=239 Identities=9% Similarity=0.001 Sum_probs=154.3
Q ss_pred cChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003315 203 WSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCI 282 (831)
Q Consensus 203 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 282 (831)
.+...+..++..+...+++++|.++.+...+.. |.....|..+...+.+.++..++..+ .+..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~-------------- 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLID-------------- 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhh--------------
Confidence 467788899999999999999999999877653 23344555555567777776666555 3332
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003315 283 EGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKIN 362 (831)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 362 (831)
......++.....+...+... +.+..++..++.+|-+.|+.++|..+++++.+..+. |..+.|.+...|... +++
T Consensus 92 -~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 92 -SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred -hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHH
Confidence 222233333333333334332 345568888999999999999999999999998755 888999999999999 999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 363 KALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMK 442 (831)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (831)
+|.+++.+.+.. +....++..+.++|..+....+. +++.-..+.+.+.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-----------------d~d~f~~i~~ki~ 214 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-----------------DFDFFLRIERKVL 214 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-----------------cchHHHHHHHHHH
Confidence 999999887664 44555677777777776655332 2233333333333
Q ss_pred hC-CCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 003315 443 DR-QIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFA 496 (831)
Q Consensus 443 ~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 496 (831)
.. +...-..++-.+-..|-..++++++..+++.+++.... |.....-++..|.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 22 21222334444445555666666666666666665433 4444444454443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.0006 Score=69.03 Aligned_cols=113 Identities=18% Similarity=0.176 Sum_probs=57.7
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhH
Q 003315 215 LVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPN-AFAYSTCIEGLCMNGMLDL 293 (831)
Q Consensus 215 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~ 293 (831)
+...|+++.|+..++.+++. .|.|+..+......+.+.|+..+|.+.++++... .|+ ......+..+|.+.|++++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 33445555555555555443 1334444444455555555555555555555544 333 3334444455555555555
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHH
Q 003315 294 GYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAEC 331 (831)
Q Consensus 294 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 331 (831)
|..+++...... |.++..|..|.+.|...|+..++..
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHH
Confidence 555555555543 4455555555555555555444433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.4e-05 Score=80.36 Aligned_cols=214 Identities=13% Similarity=0.076 Sum_probs=102.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 003315 174 DAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKK 253 (831)
Q Consensus 174 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (831)
..++..+...|....|+.+|++.-. +...+..|...|+..+|..+..+..+. +|++..|..+++.....
T Consensus 402 ~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 3455555555555555555554321 233344455555555555555444441 34555555555444444
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 003315 254 GSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVL 333 (831)
Q Consensus 254 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 333 (831)
.-+++|.++.+..... +-..+.....+.++++++.+.++.-.+.+ +....+|..+..+..+.++++.|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 4444444444432211 11111222223455555555555544443 334445555555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc
Q 003315 334 LHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFL 413 (831)
Q Consensus 334 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 413 (831)
.......+. +...||.+-.+|.+.++-.+|...+++..+- + ..
T Consensus 543 ~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-----------------------------------n-~~ 585 (777)
T KOG1128|consen 543 HRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-----------------------------------N-YQ 585 (777)
T ss_pred HHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-----------------------------------C-CC
Confidence 555543222 3344555555555555555555555555443 3 22
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 414 NKVCYDVIVDSLCKLGEVEKAMILFKEMKD 443 (831)
Q Consensus 414 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 443 (831)
+...|...+....+.|.+++|++.+.++.+
T Consensus 586 ~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 586 HWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 344444444455566677777776666543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00013 Score=73.54 Aligned_cols=149 Identities=15% Similarity=0.077 Sum_probs=126.7
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC-hhhHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLN-EYTYVIVI 247 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~ 247 (831)
...+..-.+..+...|++++|...++.+++..+ .|+.........+.+.++.++|.+.++.++... |+ ...+..+.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a 381 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLA 381 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHH
Confidence 445666777788899999999999999888764 488888888999999999999999999999864 54 67788889
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHh
Q 003315 248 KALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLE 327 (831)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 327 (831)
.++.+.|++.+|+.+++...... +.|...|..|.++|...|+..++.... ...+...|+++
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~ 442 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLE 442 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHH
Confidence 99999999999999999988764 678899999999999999988776554 44666779999
Q ss_pred HHHHHHHHHHHC
Q 003315 328 KAECVLLHMEKQ 339 (831)
Q Consensus 328 ~A~~~~~~~~~~ 339 (831)
.|...+....+.
T Consensus 443 ~A~~~l~~A~~~ 454 (484)
T COG4783 443 QAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHHh
Confidence 999999888876
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00047 Score=63.85 Aligned_cols=127 Identities=24% Similarity=0.182 Sum_probs=78.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 003315 422 VDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCL----QGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQ 497 (831)
Q Consensus 422 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 497 (831)
+.++.+..+.+-|...+++|.+. .+..+.+.|..++.+ .+++.+|.-+|++|-+. ..|+..+.+-...++..
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~ 219 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQ 219 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHH
Confidence 34445566677777777777764 244556656555543 34677777777777654 34677777777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCH-HHHHHHHHHhhhCCCCC
Q 003315 498 YGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRV-EEAEAFLDGLKGKCLEN 553 (831)
Q Consensus 498 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~ 553 (831)
.|++++|..+++..+... ..++.+...++.+....|.. +-..+.+.++....|++
T Consensus 220 ~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 220 LGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred hcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 778888888887777664 34455555555444444443 33455556665555543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.3e-05 Score=68.79 Aligned_cols=104 Identities=11% Similarity=0.014 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA 249 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (831)
..+...++..+...|++++|...++++...++. +...+..+...+.+.|++++|...|++..+.+ +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 345667888888888899998888888877643 77778888888888888888888888887764 4566777778888
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 003315 250 LCKKGSMQEAVEVFLEMEKAGVTPNAFA 277 (831)
Q Consensus 250 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 277 (831)
+...|++++|++.|++..+. .|+...
T Consensus 95 ~~~~g~~~~A~~~~~~al~~--~p~~~~ 120 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI--CGENPE 120 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh--ccccch
Confidence 88888888888888888875 455444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0024 Score=58.90 Aligned_cols=166 Identities=12% Similarity=0.076 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003315 207 SCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLC 286 (831)
Q Consensus 207 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 286 (831)
.+..++-+....++.+.|...++++... +|.+...-..-.-.+-..|++++|+++++..++.+ +.|.+++.--+...-
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 4566777788889999999999997754 33333332222233556799999999999998875 566777777777777
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChHH
Q 003315 287 MNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFG---KINK 363 (831)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~---~~~~ 363 (831)
..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.++++.-..+. +...+..+...+.-.| +.+-
T Consensus 132 a~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHH
Confidence 888888998888888887 5789999999999999999999999999999876433 4455556666655444 4566
Q ss_pred HHHHHHHHHhCCC
Q 003315 364 ALLLHHEMTSKGI 376 (831)
Q Consensus 364 A~~~~~~~~~~~~ 376 (831)
|.+.|.+.++...
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 7888888877644
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00021 Score=66.09 Aligned_cols=245 Identities=15% Similarity=0.112 Sum_probs=138.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHH-
Q 003315 427 KLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAF- 505 (831)
Q Consensus 427 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~- 505 (831)
-.|.+..++..-....... -+...-.-+.++|...|.+..... +..... .|.......+.......++.+...
T Consensus 20 Y~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 20 YLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHHH
Confidence 3455555555444332221 122222334445555554433222 222211 233333333333333334433332
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003315 506 DLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVK 585 (831)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 585 (831)
++.+.+.......+......-...|+..|++++|.+.+... .+.+..-.=+..+.+..+.+-|.+.+++|.+-+ +
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---e 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---E 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---h
Confidence 33333333333334333344444677777777777776652 122222222344556677777777777777653 5
Q ss_pred cccHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 003315 586 KSSCNKLITNLLIL----RDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTM 661 (831)
Q Consensus 586 ~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 661 (831)
..|++.|..++.+. +...+|.-+|+++... ..|+..+.+....++...|++++|..+++.++.+..+ ++.+...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHH
Confidence 66777777777654 4577888888888763 3788888888888888999999999999999987665 6777766
Q ss_pred HHHHHHHcCCHHHH-HHHHHHHHH
Q 003315 662 MIHGYCKINCLREA-RDVFNDMKQ 684 (831)
Q Consensus 662 l~~~~~~~g~~~~A-~~~~~~m~~ 684 (831)
++..-...|...++ .+.+.++..
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHh
Confidence 66666666665444 345555544
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0023 Score=58.94 Aligned_cols=165 Identities=16% Similarity=0.066 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC 251 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (831)
.+..+.-+....|+.+.|..++.++...- +.+..+-..-.-.+-..|++++|.++|+.+++.+ |.|..++-.-+...-
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 45566666678899999999999987663 3244443334445667799999999999999876 566777777777777
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---CHhH
Q 003315 252 KKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQN---KLEK 328 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~ 328 (831)
..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++++-.. |.++..+..+...+.-.| +++.
T Consensus 132 a~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 789988999998888775 46799999999999999999999999999999875 777888888888877665 4667
Q ss_pred HHHHHHHHHHCC
Q 003315 329 AECVLLHMEKQG 340 (831)
Q Consensus 329 A~~~~~~~~~~~ 340 (831)
|.+.|.+..+..
T Consensus 210 arkyy~~alkl~ 221 (289)
T KOG3060|consen 210 ARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHhC
Confidence 889999988863
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.14 E-value=9e-05 Score=65.02 Aligned_cols=94 Identities=17% Similarity=0.128 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003315 208 CNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCM 287 (831)
Q Consensus 208 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 287 (831)
...++..+...|++++|...|+.+...+ +.+...+..+...+.+.|++++|...++...+.+ +.+...+..+..++..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3334444444444444444444444332 2233344444444444444444444444443332 2223333333334444
Q ss_pred cCChhHHHHHHHHHHH
Q 003315 288 NGMLDLGYELLLKWEE 303 (831)
Q Consensus 288 ~~~~~~a~~~~~~~~~ 303 (831)
.|++++|...++...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4444444444444333
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00016 Score=64.07 Aligned_cols=119 Identities=17% Similarity=0.131 Sum_probs=66.6
Q ss_pred CCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcCh--hh
Q 003315 130 CGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSI--CS 207 (831)
Q Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~ 207 (831)
.++...+...+..++...+.. +....+...++..+...|++++|...|+.+....+.+.. .+
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s----------------~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a 87 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSS----------------PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLA 87 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCC----------------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 455555555555555553321 122344556666666777777777777776665433221 23
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 003315 208 CNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEM 266 (831)
Q Consensus 208 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 266 (831)
...+..++...|++++|+..++..... ...+..+......+.+.|++++|...|++.
T Consensus 88 ~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 88 RLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 344556666667777777666553322 233445556666666667777776666653
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00019 Score=73.54 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=85.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 003315 244 VIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQ 323 (831)
Q Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (831)
..|+..+...++++.|+.+|+++.+. .|+. ...+++.+...++..+|.+++.+.++.. |.+.......++.+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER--DPEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc--CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 34455555567777777777777765 3443 3346666666677777777777777653 55666777777778888
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 324 NKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMT 372 (831)
Q Consensus 324 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 372 (831)
++++.|.++.+++.+..+. +..+|..|..+|.+.|+++.|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888876333 45578888888888888888887777664
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0003 Score=62.29 Aligned_cols=124 Identities=15% Similarity=0.062 Sum_probs=65.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCcC---hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC--hhhHHHHH
Q 003315 173 SDAMIKAYVSVGMFDEGIDILFQINRRGFVWS---ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLN--EYTYVIVI 247 (831)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~ 247 (831)
|..++..+ ..++...+...++.+.+..+. + ..+...+...+...|++++|...|+.+......++ ......+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33333333 366666666666666665432 2 22233344666666777777777777665431121 12344455
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003315 248 KALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLK 300 (831)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (831)
..+...|++++|+..++..... ......+.....++.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666667777777666553322 22333444455556666666666665554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00078 Score=66.39 Aligned_cols=312 Identities=13% Similarity=0.012 Sum_probs=186.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhc
Q 003315 488 YNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKT 564 (831)
Q Consensus 488 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~ 564 (831)
.......+.+..++..|+..+..+++.. +.+..-|..-...+...|+++++.-..+.-...++.. +......+...
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhh
Confidence 3444556667777888888888888775 3344445444446666777777766655544433322 34445555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHH-HHHHHhcCCHHHHHH
Q 003315 565 GHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAE-PSKSMYDKL-IGALCQAEEMEQAQL 642 (831)
Q Consensus 565 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l-~~~~~~~g~~~~A~~ 642 (831)
+...+|.+.++.- ..+ ....++..++........ |.-..+..+ ..++.-.|+.++|.+
T Consensus 131 ~~~i~A~~~~~~~---------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ 190 (486)
T KOG0550|consen 131 SDLIEAEEKLKSK---------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQS 190 (486)
T ss_pred HHHHHHHHHhhhh---------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHH
Confidence 5555665555410 000 111222233333322222 333444443 245667899999988
Q ss_pred HHHHHHHCCCCCCHhHHHHHHH--HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhccc
Q 003315 643 VFNVLVDKGLTPHLVTYTMMIH--GYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKE 720 (831)
Q Consensus 643 ~~~~~~~~~~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 720 (831)
+--..++.+.. + .+..+++ ++.-.++.+.|...|++.+. ..|+...-...-..+-.+....... .-....|
T Consensus 191 ea~~ilkld~~-n--~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~g--N~~fk~G 263 (486)
T KOG0550|consen 191 EAIDILKLDAT-N--AEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKERG--NDAFKNG 263 (486)
T ss_pred HHHHHHhcccc-h--hHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhhh--hhHhhcc
Confidence 88877775322 2 3333333 33366788999999998886 5677655433322222111000000 1123578
Q ss_pred CHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 003315 721 DVVDASVFWNEMKE---MGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPD-TVTYTALLCGYLAKGDLDRAI 796 (831)
Q Consensus 721 ~~~~a~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~ 796 (831)
.+.+|.+.+.+.+. .+.+|+...|.....+..+.|+..+|+.--++... +.|. ...+..-..++...+++++|+
T Consensus 264 ~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 264 NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999874 35566777888888889999999999999998875 2322 223334456788889999999
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcccccc
Q 003315 797 ALVDEMSVKGIQG-DDYTKSSLERGIEKARILQY 829 (831)
Q Consensus 797 ~~~~~~~~~g~~p-d~~~~~~l~~~~~~~~~~~~ 829 (831)
+-+++..+..-.+ +..++.....++.++.|..|
T Consensus 342 ~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ 375 (486)
T KOG0550|consen 342 EDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDW 375 (486)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhhhhhH
Confidence 9999988754432 34556666667777766543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00034 Score=71.71 Aligned_cols=124 Identities=15% Similarity=0.124 Sum_probs=89.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003315 209 NYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMN 288 (831)
Q Consensus 209 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 288 (831)
..++..+...++++.|..+|+++.+.. |+ ....+++.+...++-.+|++++.+.++.. +.+..........|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 444555556677888888888877643 33 44456777777777788888888777642 34555566666677788
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 003315 289 GMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEK 338 (831)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 338 (831)
++++.|+++.+++.+.. |.+..+|..|+.+|...|++++|+-.++.+.-
T Consensus 248 ~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 88888888888888774 56677888888888888888888888877654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0089 Score=59.25 Aligned_cols=280 Identities=11% Similarity=0.002 Sum_probs=136.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003315 173 SDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK 252 (831)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (831)
....+..+.+...|.+|+..+..+++..+. +...|..-+..+...+++++|+--.+.-++.. +.....+...-+.+..
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLA 129 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhh
Confidence 335556678889999999999999998766 56667777778888889998887776655432 1122233333444444
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCChhhHHHH-HHHHHhcCCHhHHH
Q 003315 253 KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADI-PLSAFAYTVV-IRWFCDQNKLEKAE 330 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~g~~~~A~ 330 (831)
.++..+|.+.++.- ..+ ....++..++....... +|....+..+ ..++.-.|++++|.
T Consensus 130 ~~~~i~A~~~~~~~---------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSK---------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred hHHHHHHHHHhhhh---------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 44444444444310 000 01112222222222111 1111222211 23344455555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HhhHHHH----------HHHHHhcCChHHH
Q 003315 331 CVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTN-CGVLSVI----------LKGLCQKGMASAT 399 (831)
Q Consensus 331 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l----------l~~~~~~~~~~~a 399 (831)
++--...+.... +......-..++.-.++.+.|...|++.+..++.-. ..+.... ..-..+.|.+..|
T Consensus 190 ~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 190 SEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 555554443211 111111111222334555555555555544322110 0011111 1113345566666
Q ss_pred HHHHHHHHHCC---CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH---HHHHHHHHccCChhhHHHHH
Q 003315 400 IKQFLEFKDMG---FFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNY---TTMICGYCLQGKLGDALDLF 473 (831)
Q Consensus 400 ~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~ 473 (831)
.+.|.+.+... ..++...|........+.|+..+|+.--++..+. |.... ..-..++...++|++|.+-+
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~ 344 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDY 344 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555432 3345555666666666667777666666655543 32211 11223344456666666666
Q ss_pred HHHHHc
Q 003315 474 KEMKEM 479 (831)
Q Consensus 474 ~~~~~~ 479 (831)
++..+.
T Consensus 345 ~~a~q~ 350 (486)
T KOG0550|consen 345 EKAMQL 350 (486)
T ss_pred HHHHhh
Confidence 666543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.2e-05 Score=49.61 Aligned_cols=33 Identities=39% Similarity=0.911 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 003315 743 SYTVLIAKLCNTQNLEDGITVFNEISDRGLEPD 775 (831)
Q Consensus 743 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd 775 (831)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00018 Score=68.13 Aligned_cols=99 Identities=20% Similarity=0.245 Sum_probs=85.4
Q ss_pred ccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 003315 719 KEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPD-TVTYTALLCGYLAKGDLDRAIA 797 (831)
Q Consensus 719 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~ 797 (831)
.+++.+|+..|.+.++.. +-|.+.|..-..+|++.|.++.|++-.+..+. +.|. ..+|..|+.+|...|++++|++
T Consensus 94 ~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 578999999999999753 44667889999999999999999999999987 5665 6789999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHH
Q 003315 798 LVDEMSVKGIQGDDYTKSSLERGIE 822 (831)
Q Consensus 798 ~~~~~~~~g~~pd~~~~~~l~~~~~ 822 (831)
.|++.++ ++|+..+|-.=+..-.
T Consensus 171 aykKaLe--ldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 171 AYKKALE--LDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHhhhc--cCCCcHHHHHHHHHHH
Confidence 9999998 9999998876555443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.5e-05 Score=49.30 Aligned_cols=33 Identities=45% Similarity=0.893 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003315 658 TYTMMIHGYCKINCLREARDVFNDMKQRGITPD 690 (831)
Q Consensus 658 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 690 (831)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 689999999999999999999999999999887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00065 Score=57.93 Aligned_cols=97 Identities=9% Similarity=0.029 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCC--cChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC--CChhhHHHHHH
Q 003315 173 SDAMIKAYVSVGMFDEGIDILFQINRRGFV--WSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLS--LNEYTYVIVIK 248 (831)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~ 248 (831)
+..++..+.+.|++++|+..|.++.+..+. ....++..+..++.+.|+++.|...|+.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344455555555555555555555543321 01223444555555555555555555555442200 01233444445
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 003315 249 ALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~ 269 (831)
.+.+.|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00075 Score=57.55 Aligned_cols=108 Identities=15% Similarity=0.004 Sum_probs=85.0
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHH
Q 003315 206 CSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLN---EYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVT--PNAFAYST 280 (831)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~ 280 (831)
.++..++..+.+.|++++|...|+.+.+.. +.+ ...+..+...+.+.|++++|.+.|+.+...... ....++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 346677888999999999999999998753 222 356777899999999999999999999875211 12456778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH
Q 003315 281 CIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTV 315 (831)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 315 (831)
+..++.+.|++++|...++++.+.. |.+..+..+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~ 115 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY-PGSSAAKLA 115 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC-cCChhHHHH
Confidence 8889999999999999999999885 555554443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.75 E-value=5.4e-05 Score=47.31 Aligned_cols=32 Identities=19% Similarity=0.618 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 003315 743 SYTVLIAKLCNTQNLEDGITVFNEISDRGLEP 774 (831)
Q Consensus 743 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 774 (831)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 56666666666666666666666666666665
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0015 Score=62.43 Aligned_cols=113 Identities=14% Similarity=0.008 Sum_probs=87.1
Q ss_pred CcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcC---ChhHHHHHHHHHHhcCCCCChhh
Q 003315 166 STLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECG---KVDMALAVYQHLKRLGLSLNEYT 242 (831)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~ 242 (831)
++-+.+-|..|+..|++.|+++.|...|.++.+..++ ++..+..+..++.... ...++..+|+++++.+ +.|+.+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ira 229 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRA 229 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHH
Confidence 3446778889999999999999999999999888744 7777888887776553 3568889999988765 456777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003315 243 YVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCI 282 (831)
Q Consensus 243 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 282 (831)
...|...+...|++.+|...|+.|++.. |.......+|
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~i 267 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHH
Confidence 7777888889999999999999998863 3333344444
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.74 E-value=5.5e-05 Score=47.28 Aligned_cols=33 Identities=27% Similarity=0.553 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003315 657 VTYTMMIHGYCKINCLREARDVFNDMKQRGITP 689 (831)
Q Consensus 657 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 689 (831)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.011 Score=57.26 Aligned_cols=183 Identities=13% Similarity=0.070 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhH---HHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSC---NYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVI 245 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 245 (831)
++......+..+...|++++|+..|+++....+.+ ..+. ..++.++.+.+++++|...|+++++.........|..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 44455567777788899999999999988875442 3332 4566778888999999999999887542211223333
Q ss_pred HHHHHHh--cC---------------C---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003315 246 VIKALCK--KG---------------S---MQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEAD 305 (831)
Q Consensus 246 l~~~~~~--~g---------------~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (831)
.+.+.+. .+ + ..+|++.|+++++. -|+..- ..+|...+..+...=
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~y-------------a~~A~~rl~~l~~~l 174 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQY-------------TTDATKRLVFLKDRL 174 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChh-------------HHHHHHHHHHHHHHH
Confidence 3333321 11 1 23444555555543 343321 122322222221110
Q ss_pred CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003315 306 IPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQG--VVPDVYAYSALISGYCKFGKINKALLLHHEM 371 (831)
Q Consensus 306 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~ 371 (831)
..--..+++.|.+.|.+..|..-++.+.+.= ..........++.+|...|..++|......+
T Consensus 175 ----a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 175 ----AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred ----HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0011235566666777777777777766541 1112334445566666666666666655544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00057 Score=55.37 Aligned_cols=95 Identities=19% Similarity=0.165 Sum_probs=68.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003315 173 SDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK 252 (831)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (831)
+..++..+...|++++|+..++++.+..+. +..++..+...+...+++++|.+.|+...+.. +.+...+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 456777777788888888888887776533 44566677777777888888888888777654 3344567777777777
Q ss_pred cCChHHHHHHHHHHHhC
Q 003315 253 KGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~~~ 269 (831)
.|++++|...+++..+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 78888888877776643
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00097 Score=57.63 Aligned_cols=97 Identities=10% Similarity=-0.091 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003315 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQI 196 (831)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 196 (831)
.+....++..+...|++++|..+|+.+...+|. +..-|..|+-++-..|++++|+..|.++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-------------------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A 95 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-------------------SFDYWFRLGECCQAQKHWGEAIYAYGRA 95 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-------------------cHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 444445555555566666666666655554332 4445556666666666666666666666
Q ss_pred HHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003315 197 NRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKR 233 (831)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 233 (831)
...++. |+..+-.+..++...|+.+.|.+.|+..+.
T Consensus 96 ~~L~~d-dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 96 AQIKID-APQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HhcCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555532 555555566666666666666666655553
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.001 Score=68.66 Aligned_cols=99 Identities=14% Similarity=-0.025 Sum_probs=80.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG 254 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (831)
..+..+...|++++|+..|+++++.++. +...+..+..++.+.|++++|+..++++++.. +.+...|..+..+|...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 4456677889999999999999988754 77788888889999999999999999988764 446778888888888999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHH
Q 003315 255 SMQEAVEVFLEMEKAGVTPNAFA 277 (831)
Q Consensus 255 ~~~~A~~~~~~m~~~~~~p~~~~ 277 (831)
++++|+..|++.++. .|+...
T Consensus 85 ~~~eA~~~~~~al~l--~P~~~~ 105 (356)
T PLN03088 85 EYQTAKAALEKGASL--APGDSR 105 (356)
T ss_pred CHHHHHHHHHHHHHh--CCCCHH
Confidence 999999999998876 344433
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00098 Score=53.95 Aligned_cols=87 Identities=24% Similarity=0.135 Sum_probs=33.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHh
Q 003315 248 KALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLE 327 (831)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 327 (831)
..+...|++++|+..++++.+.. +.+...+..+...+...+++++|.+.++...... +.+..++..++..+...|+++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHH
Confidence 33334444444444444443321 1122233333333333444444444444433332 222233334444444444444
Q ss_pred HHHHHHHHH
Q 003315 328 KAECVLLHM 336 (831)
Q Consensus 328 ~A~~~~~~~ 336 (831)
+|...+...
T Consensus 86 ~a~~~~~~~ 94 (100)
T cd00189 86 EALEAYEKA 94 (100)
T ss_pred HHHHHHHHH
Confidence 444444443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.012 Score=57.02 Aligned_cols=57 Identities=11% Similarity=-0.049 Sum_probs=35.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 003315 281 CIEGLCMNGMLDLGYELLLKWEEA--DIPLSAFAYTVVIRWFCDQNKLEKAECVLLHME 337 (831)
Q Consensus 281 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 337 (831)
+..-|.+.|.+..|..-++.+++. +.+........++.+|...|..++|.++...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 345566667777777777766664 233345556666777777777777776665543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0014 Score=56.57 Aligned_cols=87 Identities=13% Similarity=-0.031 Sum_probs=50.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCH
Q 003315 526 IIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDN 602 (831)
Q Consensus 526 l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 602 (831)
+...+...|++++|+++|+-+...+|.. |-.|+.++...|++++|+..|..+...++. |+..+-.++.++...|+.
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCH
Confidence 3334556667777777766666666554 555666666666666666666666655543 555555555555555555
Q ss_pred HHHHHHHHHHH
Q 003315 603 NNALKLFKTMI 613 (831)
Q Consensus 603 ~~a~~~~~~~~ 613 (831)
+.|.+-|+.++
T Consensus 120 ~~A~~aF~~Ai 130 (157)
T PRK15363 120 CYAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.12 Score=52.35 Aligned_cols=97 Identities=14% Similarity=0.094 Sum_probs=48.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc-----cHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHH-
Q 003315 554 YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKS-----SCNKLITNLL----ILRDNNNALKLFKTMITLNAEPSKSM- 623 (831)
Q Consensus 554 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~p~~~~- 623 (831)
+..++....+.++..+|.+.+.-+.-.++..... +-..+-...+ ..-+...-+.+|+.+...++..-.-+
T Consensus 301 F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh 380 (549)
T PF07079_consen 301 FGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVH 380 (549)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHH
Confidence 5556666677777777777776665554332110 0011111111 11223344556666655432211111
Q ss_pred -HHHHHHHHHhcCC-HHHHHHHHHHHHHC
Q 003315 624 -YDKLIGALCQAEE-MEQAQLVFNVLVDK 650 (831)
Q Consensus 624 -~~~l~~~~~~~g~-~~~A~~~~~~~~~~ 650 (831)
...-..-+|+.|. -++|..++..+++-
T Consensus 381 ~L~~~Ak~lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 381 YLVFGAKHLWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 1112344777777 67788888888764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0045 Score=61.90 Aligned_cols=166 Identities=11% Similarity=0.079 Sum_probs=75.7
Q ss_pred HHHHhccCChhHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhc
Q 003315 89 EKLYSLRKEPKIALSFFEQLKR----SGFS-HNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCG 163 (831)
Q Consensus 89 ~~l~~~~~~~~~A~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (831)
...+...|+++.|...|..+.. .+.. .....|..++.++... ++++|...+.+.++.... .
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~-------------~ 107 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYRE-------------A 107 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHH-------------C
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHh-------------c
Confidence 4566677888888888887652 1111 1233344444444333 666666666655543110 0
Q ss_pred CCCcchHHHHHHHHHHHHHc-CChhHHHHHHHHHHHc----CCC-cChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 003315 164 EGSTLLTRLSDAMIKAYVSV-GMFDEGIDILFQINRR----GFV-WSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLS 237 (831)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 237 (831)
..+..-...+..++..|-.. |++++|++.|.++.+. +.. .-...+..++..+.+.|++++|.++|+++......
T Consensus 108 G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 108 GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 00111234555666666655 6666666666665432 100 01123344555555666666666666655543211
Q ss_pred CC-----hh-hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 238 LN-----EY-TYVIVIKALCKKGSMQEAVEVFLEMEK 268 (831)
Q Consensus 238 ~~-----~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~ 268 (831)
.+ +. .+...+-.+...|+...|.+.|++...
T Consensus 188 ~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 188 NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11 11 111222233445555555555555543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0046 Score=61.86 Aligned_cols=26 Identities=8% Similarity=-0.064 Sum_probs=13.8
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHH
Q 003315 120 YAAIVRILCCCGWQKKLESMLLELVR 145 (831)
Q Consensus 120 ~~~~~~~~~~~~~~~~a~~~~~~~~~ 145 (831)
|...+..+-..|++++|...|.+..+
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~ 63 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAAD 63 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHH
Confidence 34444455556666666666665443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.17 Score=53.93 Aligned_cols=154 Identities=15% Similarity=0.157 Sum_probs=88.8
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCChHH
Q 003315 323 QNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTN----CGVLSVILKGLCQKGMASA 398 (831)
Q Consensus 323 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~ 398 (831)
-|++++|++++-++.++ | ..|..+.+.|+|-...++++.- |-..| ...+..+...+.....+++
T Consensus 747 ~g~feeaek~yld~drr----D-----LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~ 814 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRR----D-----LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEE 814 (1189)
T ss_pred hcchhHhhhhhhccchh----h-----hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888877776654 2 2355666777777766655431 11111 2345566666666666666
Q ss_pred HHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHH
Q 003315 399 TIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKE 478 (831)
Q Consensus 399 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 478 (831)
|.+.|..-... ...+.++.+..++++-+.+-+.+.+ +....-.+..++...|.-++|.+.+-+.-
T Consensus 815 A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s- 879 (1189)
T KOG2041|consen 815 AAKYYSYCGDT---------ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS- 879 (1189)
T ss_pred HHHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc-
Confidence 66666543221 1245555555555554444444332 45556667777788888888777664321
Q ss_pred cCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 003315 479 MGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYM 511 (831)
Q Consensus 479 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 511 (831)
. | ...+..|...+++.+|.++-+..
T Consensus 880 --~-p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 880 --L-P-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred --C-c-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 1 23456677777777777766554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0034 Score=52.40 Aligned_cols=108 Identities=21% Similarity=0.114 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcC--hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC----hhhHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWS--ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLN----EYTYVI 245 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ 245 (831)
+...++.++-..|+.++|+.+|++.+..|.... ...+-.+...+...|++++|+.++++..... |+ ......
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f 80 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVF 80 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHH
Confidence 455778888999999999999999999875533 3456667788899999999999999988642 33 222223
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003315 246 VIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGL 285 (831)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 285 (831)
+..++...|+.++|++.+-.... ++...|.--|..|
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~y 116 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFY 116 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 33456788999999998877664 2333444444444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0037 Score=57.30 Aligned_cols=95 Identities=12% Similarity=-0.062 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcC--hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWS--ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
....+..++..+...|++++|+..|+++++.++.+. ...+..++.++.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 456788999999999999999999999987654332 4578888899999999999999999988753 3456677777
Q ss_pred HHHHHhcCChHHHHHHHH
Q 003315 247 IKALCKKGSMQEAVEVFL 264 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~ 264 (831)
...+...|+...+..-++
T Consensus 113 g~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHHcCChHhHhhCHH
Confidence 778888777555444433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00021 Score=56.15 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=40.7
Q ss_pred cCChhHHHHHHHHHHHcCCC-cChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 003315 183 VGMFDEGIDILFQINRRGFV-WSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVE 261 (831)
Q Consensus 183 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (831)
.|+++.|+.+++++.+..+. ++...+..+..++.+.|++++|..+++. .+.+ +.+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35566666666666655432 1233334455666666666666666655 2221 1222333344555566666666666
Q ss_pred HHHH
Q 003315 262 VFLE 265 (831)
Q Consensus 262 ~~~~ 265 (831)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0011 Score=62.93 Aligned_cols=103 Identities=12% Similarity=0.064 Sum_probs=84.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG 254 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (831)
.-+.-.++.++|++|+..|.++++..+. |...|..-..+|.+.|.++.|++-.+..+..+ +--..+|..|..+|...|
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccC
Confidence 3344567889999999999999999865 77777778889999999999999999888753 233568999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003315 255 SMQEAVEVFLEMEKAGVTPNAFAYSTC 281 (831)
Q Consensus 255 ~~~~A~~~~~~m~~~~~~p~~~~~~~l 281 (831)
++++|++.|++.++. .|+..+|-.=
T Consensus 164 k~~~A~~aykKaLel--dP~Ne~~K~n 188 (304)
T KOG0553|consen 164 KYEEAIEAYKKALEL--DPDNESYKSN 188 (304)
T ss_pred cHHHHHHHHHhhhcc--CCCcHHHHHH
Confidence 999999999998875 6777766443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.045 Score=48.09 Aligned_cols=94 Identities=12% Similarity=0.080 Sum_probs=43.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhc
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGL-SLNEYTYVIVIKALCKK 253 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 253 (831)
.|+.+....|++.+|...|++.+.--+..|......+.++....++..+|...++.+-+... ..++.+...+.+.+...
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~ 173 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQ 173 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhc
Confidence 44445555555555555555544332333444444444555555555555555555444210 01122333444444455
Q ss_pred CChHHHHHHHHHHHh
Q 003315 254 GSMQEAVEVFLEMEK 268 (831)
Q Consensus 254 g~~~~A~~~~~~m~~ 268 (831)
|++.+|...|+....
T Consensus 174 g~~a~Aesafe~a~~ 188 (251)
T COG4700 174 GKYADAESAFEVAIS 188 (251)
T ss_pred CCchhHHHHHHHHHH
Confidence 555555555555443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.002 Score=51.33 Aligned_cols=87 Identities=14% Similarity=0.302 Sum_probs=65.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCC
Q 003315 660 TMMIHGYCKINCLREARDVFNDMKQRGI-TPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIR 738 (831)
Q Consensus 660 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 738 (831)
...|..+...|++.....+|+.+++.|+ .|+..+|+.++.+..+..+.+ ..-....-+.+.++++|...+++
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~-------~~ie~kl~~LLtvYqDiL~~~lK 101 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDS-------EDIENKLTNLLTVYQDILSNKLK 101 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccc-------hhHHHHHHHHHHHHHHHHHhccC
Confidence 3455566666999999999999999999 899999999999888744321 11123456677888888888888
Q ss_pred CCHHHHHHHHHHHHh
Q 003315 739 PDVISYTVLIAKLCN 753 (831)
Q Consensus 739 p~~~~~~~l~~~~~~ 753 (831)
|+..+|+.++..+.+
T Consensus 102 P~~etYnivl~~Llk 116 (120)
T PF08579_consen 102 PNDETYNIVLGSLLK 116 (120)
T ss_pred CcHHHHHHHHHHHHH
Confidence 888888888876654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00037 Score=52.17 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=52.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003315 752 CNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLER 819 (831)
Q Consensus 752 ~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~ 819 (831)
.+.|++++|+++|+++.+. .+-+..++..++.+|.+.|++++|.++++++.. ..|+...+..+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHHHHh
Confidence 4679999999999999875 344688888999999999999999999999988 6788777666543
|
... |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0026 Score=65.75 Aligned_cols=93 Identities=12% Similarity=0.008 Sum_probs=73.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003315 557 MINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEE 636 (831)
Q Consensus 557 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 636 (831)
.+..+...|++++|+++|+++++..+. +...+..+..++...|++++|+..+++++..+ +.+...|..++.+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 355666778888888888888887765 66777788888888888888888888888765 3456677778888888888
Q ss_pred HHHHHHHHHHHHHCC
Q 003315 637 MEQAQLVFNVLVDKG 651 (831)
Q Consensus 637 ~~~A~~~~~~~~~~~ 651 (831)
+++|...|+++++.+
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 888888888888763
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0048 Score=56.51 Aligned_cols=84 Identities=14% Similarity=0.035 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003315 207 SCNYFMNQLVECGKVDMALAVYQHLKRLGLSLN--EYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEG 284 (831)
Q Consensus 207 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 284 (831)
.+..++..+...|++++|...|++..+....+. ...+..+...+.+.|++++|+..++++.+.. +.+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344444555555555555555555554321111 2344445555555555555555555555431 1123333344444
Q ss_pred HHhcCCh
Q 003315 285 LCMNGML 291 (831)
Q Consensus 285 ~~~~~~~ 291 (831)
+...|+.
T Consensus 116 ~~~~g~~ 122 (172)
T PRK02603 116 YHKRGEK 122 (172)
T ss_pred HHHcCCh
Confidence 4444443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.088 Score=55.91 Aligned_cols=206 Identities=15% Similarity=0.098 Sum_probs=124.1
Q ss_pred CcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc-CCCC--------ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 003315 202 VWSICSCNYFMNQLVECGKVDMALAVYQHLKRL-GLSL--------NEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVT 272 (831)
Q Consensus 202 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 272 (831)
.|.+..|..+.......-..+-|+..|-+.... |++. +...-.+=+ -.--|++++|.++|-+|-.+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei--~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEI--SAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhH--hhhhcchhHhhhhhhccchhh--
Confidence 467777877777666666677777766554321 1110 011111111 223588999999988876542
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHH
Q 003315 273 PNAFAYSTCIEGLCMNGMLDLGYELLLKWEEA-DIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSAL 351 (831)
Q Consensus 273 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 351 (831)
..|..+.+.||+-...++++.--.. +-..-..+++.+...+.....+++|.+.+..-.. . ...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhH
Confidence 3456667778877666655431110 0011145788888888888888888888866432 1 224
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCH
Q 003315 352 ISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEV 431 (831)
Q Consensus 352 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 431 (831)
+.++....++++-..+...+.+ +...+-.+...+...|.-++|.+.|-.... + ...+..|...+++
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s~---p------kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRSL---P------KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhccC---c------HHHHHHHHHHHHH
Confidence 5566666666665555444433 445566778888888888888877654321 1 1355667777888
Q ss_pred HHHHHHHHHH
Q 003315 432 EKAMILFKEM 441 (831)
Q Consensus 432 ~~A~~~~~~~ 441 (831)
.+|.++-+..
T Consensus 895 ~~avelaq~~ 904 (1189)
T KOG2041|consen 895 GEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHhc
Confidence 8888776654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0023 Score=63.65 Aligned_cols=128 Identities=10% Similarity=0.147 Sum_probs=71.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 003315 242 TYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEG-LCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWF 320 (831)
Q Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (831)
+|..+++...+.+..+.|.++|.++.+.+ .-+...|...+.. +...++.+.|..+|+...+. ++.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45556666666666666666666665432 2233334444333 22244555566666666654 355666666666666
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 321 CDQNKLEKAECVLLHMEKQGVVPDV----YAYSALISGYCKFGKINKALLLHHEMTS 373 (831)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~ 373 (831)
.+.++.+.|+.+|++.... .|.. ..|...+..=.+.|+++.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6667777777777766654 2222 3666666666666666666666666655
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.033 Score=48.86 Aligned_cols=129 Identities=16% Similarity=0.007 Sum_probs=63.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCChhhHHHH
Q 003315 238 LNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADI-PLSAFAYTVV 316 (831)
Q Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l 316 (831)
|++..-..|..+..+.|++.+|...|++...--.-.|......+.++....+++..|...++++-+.+. .-++.....+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 444444455555555555555555555554422234444444555555555555555555555544320 0123344555
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003315 317 IRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLH 368 (831)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~ 368 (831)
.+.+...|++++|+..|+..... -|+...-......+.++|+.+++..-+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 56666666666666666666654 233332222333344555555444333
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00014 Score=44.18 Aligned_cols=29 Identities=34% Similarity=0.830 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 003315 743 SYTVLIAKLCNTQNLEDGITVFNEISDRG 771 (831)
Q Consensus 743 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 771 (831)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666665544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0034 Score=57.30 Aligned_cols=96 Identities=11% Similarity=-0.067 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCc--ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVW--SICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
....+..++..+...|++++|+..|++++...+.+ ...++..+..++...|++++|+..++...+.. +....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 34566788888888899999999998887664332 23467778888888888888888888887653 3344556666
Q ss_pred HHHHH-------hcCChHHHHHHHHH
Q 003315 247 IKALC-------KKGSMQEAVEVFLE 265 (831)
Q Consensus 247 ~~~~~-------~~g~~~~A~~~~~~ 265 (831)
...+. +.|+++.|+..+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 66665 55665544444433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00024 Score=55.88 Aligned_cols=20 Identities=20% Similarity=0.492 Sum_probs=8.6
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 003315 246 VIKALCKKGSMQEAVEVFLE 265 (831)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~ 265 (831)
+...+.+.|++++|.+++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444444433
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00016 Score=43.91 Aligned_cols=30 Identities=50% Similarity=1.041 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003315 658 TYTMMIHGYCKINCLREARDVFNDMKQRGI 687 (831)
Q Consensus 658 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 687 (831)
+||+++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 678888888888888888888888877653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.15 Score=50.47 Aligned_cols=224 Identities=13% Similarity=0.093 Sum_probs=121.7
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHH
Q 003315 94 LRKEPKIALSFFEQLKRSGFSHNLCTYAAIVR--ILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTR 171 (831)
Q Consensus 94 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (831)
.-..|..+.++|...++. .-|..+.. +....|+...|..+-.+.-..-..+. .+-
T Consensus 65 iw~sP~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~~llssDq-----------------epL 121 (531)
T COG3898 65 IWESPYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQ-----------------EPL 121 (531)
T ss_pred HHhCcHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccc-----------------hHH
Confidence 335788888988877632 12333433 33456676667666554322211111 122
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC 251 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (831)
+...-.+.-.-.|++++|.+-|+.|+... ..-......|.-.--+.|..+.|.+.-++.-... +.-...+...+...|
T Consensus 122 IhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~ 199 (531)
T COG3898 122 IHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARC 199 (531)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHH
Confidence 23334445566799999999999887631 1111122233333346788888888888776543 334567888889999
Q ss_pred hcCChHHHHHHHHHHHhCC-CCCCHHH--HHHHHHH--HH-hcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcC
Q 003315 252 KKGSMQEAVEVFLEMEKAG-VTPNAFA--YSTCIEG--LC-MNGMLDLGYELLLKWEEADIPLS-AFAYTVVIRWFCDQN 324 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~-~~p~~~~--~~~l~~~--~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 324 (831)
..|+++.|+++.+.-.+.. +.++..- -..|+.+ -. -.-+...|...-.+..+. .|+ ...-..-.+.+.+.|
T Consensus 200 ~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~ 277 (531)
T COG3898 200 AAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDG 277 (531)
T ss_pred hcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhcc
Confidence 9999999999998766542 2344321 1112211 11 112334444443333332 222 122233445566666
Q ss_pred CHhHHHHHHHHHHHCCCCCC
Q 003315 325 KLEKAECVLLHMEKQGVVPD 344 (831)
Q Consensus 325 ~~~~A~~~~~~~~~~~~~p~ 344 (831)
+..++-.+++.+-+..+.|+
T Consensus 278 ~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 278 NLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred chhhhhhHHHHHHhcCCChH
Confidence 66666666666666544444
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0084 Score=50.06 Aligned_cols=105 Identities=20% Similarity=0.092 Sum_probs=60.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---ChhhHHHHHHHH
Q 003315 246 VIKALCKKGSMQEAVEVFLEMEKAGVTPN--AFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPL---SAFAYTVVIRWF 320 (831)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~ 320 (831)
+..++-..|+.++|+..|++..+.|+... ...+..+...+...|++++|..++++..... |. +......+...+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 44555566777777777777776665433 2345555566667777777777777666542 22 333344445566
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003315 321 CDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGY 355 (831)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 355 (831)
...|+.++|.+.+-..... +...|..-|..|
T Consensus 86 ~~~gr~~eAl~~~l~~la~----~~~~y~ra~~~y 116 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAE----TLPRYRRAIRFY 116 (120)
T ss_pred HHCCCHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 6677777777666554432 333444444444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00062 Score=50.34 Aligned_cols=62 Identities=16% Similarity=0.256 Sum_probs=52.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 003315 747 LIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDD 811 (831)
Q Consensus 747 l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~ 811 (831)
+...+.+.|++++|++.|+++++.. +-+...+..++.++...|++++|...++++++ ..|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE--LDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 4567889999999999999999863 33578899999999999999999999999988 67765
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0018 Score=66.78 Aligned_cols=120 Identities=10% Similarity=0.087 Sum_probs=77.6
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 003315 585 KKSSCNKLITNLLILRDNNNALKLFKTMITL--NAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMM 662 (831)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 662 (831)
+...+..++..+....+.+++..++-+.... ....-..|..++++.|.+.|..+++..+++.=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4445555555555555666666666555543 11122334456777777777777777777777777777777777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 003315 663 IHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKI 704 (831)
Q Consensus 663 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 704 (831)
++.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777776666666666666666666654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0021 Score=66.23 Aligned_cols=120 Identities=17% Similarity=0.184 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC--CCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRG--FVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
++.....++..+....+.+++..++-+..... ...-..+..++++.|.+.|..+.++.++..=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 33334445555555555666666665555431 1122334456666666677667777666666666666777777777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMN 288 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 288 (831)
|+.+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777666666555455555555555554443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0012 Score=49.55 Aligned_cols=65 Identities=12% Similarity=0.101 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcC-ChhHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVG-MFDEGIDILF 194 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~ 194 (831)
++.+|..++.++...|++++|...|.++++.+|. ++.++..++.+|...| ++++|+..++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-------------------~~~~~~~~g~~~~~~~~~~~~A~~~~~ 62 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-------------------NAEAYYNLGLAYMKLGKDYEEAIEDFE 62 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-------------------HHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------------------CHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 3445555555555555555555555555555333 3445555555555555 4555555555
Q ss_pred HHHHc
Q 003315 195 QINRR 199 (831)
Q Consensus 195 ~~~~~ 199 (831)
++++.
T Consensus 63 ~al~l 67 (69)
T PF13414_consen 63 KALKL 67 (69)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 55543
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.033 Score=51.81 Aligned_cols=132 Identities=14% Similarity=0.029 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH-----
Q 003315 207 SCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTC----- 281 (831)
Q Consensus 207 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l----- 281 (831)
+.+.+++.+...|++.-....+.++++...+.++..-..|++.-.+.|+.+.|...|++..+..-..|..+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 456677777777888888888888887665667777788888888888888888888876654323333333333
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 282 IEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
...+.-.+++..|...+.++...+ +.++..-|.-+-+..-.|+..+|.+.++.|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 234555667777777777766664 445555555444555567777777777777765
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.004 Score=61.92 Aligned_cols=139 Identities=12% Similarity=0.131 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcC
Q 003315 658 TYTMMIHGYCKINCLREARDVFNDMKQRG-ITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMG 736 (831)
Q Consensus 658 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~ 736 (831)
+|..+++...+.+..+.|..+|++..+.+ +..+.....+++.-++ .++...|.++|+...+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~----------------~~d~~~A~~Ife~glk~- 65 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC----------------NKDPKRARKIFERGLKK- 65 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT----------------CS-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh----------------CCCHHHHHHHHHHHHHH-
Confidence 46666666666666777777777766432 1223333333333322 24455577777776643
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 003315 737 IRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDT---VTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYT 813 (831)
Q Consensus 737 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~ 813 (831)
+..+...|...++.+.+.|+.+.|..+|++.+.. +.++. .+|..++.-=.+.|+.+.+.++.+++.+ ..|+...
T Consensus 66 f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~ 142 (280)
T PF05843_consen 66 FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNS 142 (280)
T ss_dssp HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-H
T ss_pred CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhH
Confidence 3455667788888888888888888888888865 44333 4788888888888888888888888877 5555444
Q ss_pred HHH
Q 003315 814 KSS 816 (831)
Q Consensus 814 ~~~ 816 (831)
+..
T Consensus 143 ~~~ 145 (280)
T PF05843_consen 143 LEL 145 (280)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.013 Score=56.32 Aligned_cols=114 Identities=15% Similarity=0.029 Sum_probs=93.9
Q ss_pred CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHc---CChhHHH
Q 003315 114 SHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSV---GMFDEGI 190 (831)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~ 190 (831)
+.|.+.|..+++++...|+...|...|...++..++ ++..+..++.++... .+-.++.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-------------------n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-------------------NPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-------------------CHHHHHHHHHHHHHhcCCcccHHHH
Confidence 348999999999999999999999999999998665 556677777777544 3467899
Q ss_pred HHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003315 191 DILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA 249 (831)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (831)
.+|+++++.++. |+.+...+...+...|++.+|...|+.|++.. |....+..++..
T Consensus 214 ~ll~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~ 269 (287)
T COG4235 214 ALLRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIER 269 (287)
T ss_pred HHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHH
Confidence 999999999855 89999999999999999999999999999864 444445555543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.026 Score=53.23 Aligned_cols=69 Identities=12% Similarity=0.014 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003315 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQI 196 (831)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 196 (831)
+......+..+...|++.+|...|..++...|. ++..+.+...++.++.+.|++++|+..+++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~----------------s~~a~~A~l~la~a~y~~~~y~~A~~~~~~f 68 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPN----------------SPYAPQAQLMLAYAYYKQGDYEEAIAAYERF 68 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT----------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC----------------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444455556666677777777777776665332 2334456666677777777777777777776
Q ss_pred HHcCC
Q 003315 197 NRRGF 201 (831)
Q Consensus 197 ~~~~~ 201 (831)
++.-|
T Consensus 69 i~~yP 73 (203)
T PF13525_consen 69 IKLYP 73 (203)
T ss_dssp HHH-T
T ss_pred HHHCC
Confidence 66543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00088 Score=50.28 Aligned_cols=63 Identities=19% Similarity=0.298 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 003315 740 DVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEP-DTVTYTALLCGYLAKG-DLDRAIALVDEMSV 804 (831)
Q Consensus 740 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 804 (831)
+...|..++..+...|++++|++.|++.++. .| ++.+|..++.+|...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4567888999999999999999999999985 45 5788999999999999 79999999999887
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0065 Score=55.43 Aligned_cols=62 Identities=16% Similarity=0.117 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 207 SCNYFMNQLVECGKVDMALAVYQHLKRLGLSL--NEYTYVIVIKALCKKGSMQEAVEVFLEMEK 268 (831)
Q Consensus 207 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 268 (831)
.+..++..+...|++++|+..|++.......+ ...++..+...+...|++++|++.+++..+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444555555555555555554332111 112444455555555555555555555544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0012 Score=48.78 Aligned_cols=58 Identities=24% Similarity=0.246 Sum_probs=36.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 176 MIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 176 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
++..+...|++++|+..|+++++..+. +..++..+..++...|++++|...|+++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455566666666666666666666533 5566666666666666666666666666553
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.012 Score=63.68 Aligned_cols=139 Identities=10% Similarity=0.018 Sum_probs=90.2
Q ss_pred CCCcChhhHHHHHHHHHHc--C---ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--------CChHHHHHHHHHH
Q 003315 200 GFVWSICSCNYFMNQLVEC--G---KVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKK--------GSMQEAVEVFLEM 266 (831)
Q Consensus 200 ~~~~~~~~~~~l~~~~~~~--~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~m 266 (831)
..+.+..+|...+++.... + ..+.|..+|++.++.. |.....|..+..++... ++...+.+..++.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3455777777777664432 2 2567888888888754 22344454444333221 1234455555554
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 003315 267 EKA-GVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGV 341 (831)
Q Consensus 267 ~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 341 (831)
... ....+...|..+.-.....|++++|...++++++.+ |+...|..+...+...|+.++|.+.+++....++
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 442 123455667777666667788888888888888875 4677888888888888999999888888887643
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.019 Score=62.10 Aligned_cols=137 Identities=17% Similarity=0.100 Sum_probs=71.7
Q ss_pred CCCCCHHHHHHHHHHHHc--CC---ChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcC--
Q 003315 112 GFSHNLCTYAAIVRILCC--CG---WQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVG-- 184 (831)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~--~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 184 (831)
..+.|+..|....+.... .+ ....|.++|.++++.+|+ ...++..++.++....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-------------------~a~a~A~la~~~~~~~~~ 392 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-------------------FTYAQAEKALADIVRHSQ 392 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-------------------cHHHHHHHHHHHHHHHhc
Confidence 345678888777666443 22 356788899999998665 3334444444332221
Q ss_pred ------ChhHHHHHHHHHHHcC-CCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH
Q 003315 185 ------MFDEGIDILFQINRRG-FVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQ 257 (831)
Q Consensus 185 ------~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (831)
+...+.+..++..... ...+..++..+.-.....|++++|...+++.+... |+...|..+...+...|+.+
T Consensus 393 ~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~ 470 (517)
T PRK10153 393 QPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNR 470 (517)
T ss_pred CCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHH
Confidence 1222233333322211 12233444444444444555666666666655543 45555555555555566666
Q ss_pred HHHHHHHHHHhC
Q 003315 258 EAVEVFLEMEKA 269 (831)
Q Consensus 258 ~A~~~~~~m~~~ 269 (831)
+|.+.++++...
T Consensus 471 eA~~~~~~A~~L 482 (517)
T PRK10153 471 LAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHhc
Confidence 666666555543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.32 Score=49.02 Aligned_cols=79 Identities=24% Similarity=0.280 Sum_probs=38.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCH
Q 003315 422 VDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAV 501 (831)
Q Consensus 422 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 501 (831)
+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-.+.-.. +-.+..|..++.+|.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 334444555555555544432 13555555555555555555544443221 11345555555555555555
Q ss_pred HHHHHHHHH
Q 003315 502 QKAFDLLNY 510 (831)
Q Consensus 502 ~~a~~~~~~ 510 (831)
.+|..++.+
T Consensus 254 ~eA~~yI~k 262 (319)
T PF04840_consen 254 KEASKYIPK 262 (319)
T ss_pred HHHHHHHHh
Confidence 555555444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.08 Score=55.66 Aligned_cols=83 Identities=13% Similarity=0.027 Sum_probs=50.5
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHh
Q 003315 484 DIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCK 563 (831)
Q Consensus 484 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 563 (831)
+..+...+..-+-+...+..|.++|.+|-. ...+++.....+++++|..+-++..+.-++.|..-..-++.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 334444444445555566667777766642 23455566677777777777777666666666666666666
Q ss_pred cCCHHHHHHHHH
Q 003315 564 TGHTKEAFQLFM 575 (831)
Q Consensus 564 ~g~~~~A~~~~~ 575 (831)
+.++++|.+.|.
T Consensus 817 ~DrFeEAqkAfh 828 (1081)
T KOG1538|consen 817 NDRFEEAQKAFH 828 (1081)
T ss_pred hhhHHHHHHHHH
Confidence 666666665543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.34 Score=49.06 Aligned_cols=128 Identities=17% Similarity=0.242 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcC
Q 003315 658 TYTMMIHGYCKINCLREARDVFNDMKQRG-ITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMG 736 (831)
Q Consensus 658 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~ 736 (831)
.|...++.-.+..-.+.|..+|-+..+.| +.+++..+++++.-++. ++...|.++|+-=..
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~----------------~d~~ta~~ifelGl~-- 460 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT----------------GDRATAYNIFELGLL-- 460 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc----------------CCcchHHHHHHHHHH--
Confidence 34444444444444555555555555544 34444555555544432 444445555443111
Q ss_pred CCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 737 IRPDVISY-TVLIAKLCNTQNLEDGITVFNEISDRGLEPD--TVTYTALLCGYLAKGDLDRAIALVDEMSV 804 (831)
Q Consensus 737 ~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 804 (831)
.-||...| +..+.-+.+-++-+.|..+|++.+++ +..+ ..+|..++.-=..-|+...+..+=+.|..
T Consensus 461 ~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 461 KFPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 12333332 33444455555555555555554443 3323 34455555555555555555555555544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.004 Score=61.31 Aligned_cols=233 Identities=16% Similarity=0.089 Sum_probs=130.6
Q ss_pred HHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH--H--Hc
Q 003315 124 VRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQI--N--RR 199 (831)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~--~~ 199 (831)
...|++.|+.+.-.+.|...++...+ +......+|..|+.+|.-.++|++|++....= + ..
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe---------------Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l 88 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE---------------DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL 88 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch---------------HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh
Confidence 45688899999999999988887433 12224568999999999999999999886541 1 11
Q ss_pred CC-CcChhhHHHHHHHHHHcCChhHHHHHHHHHH----hcCCC-CChhhHHHHHHHHHhcCC------------------
Q 003315 200 GF-VWSICSCNYFMNQLVECGKVDMALAVYQHLK----RLGLS-LNEYTYVIVIKALCKKGS------------------ 255 (831)
Q Consensus 200 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~------------------ 255 (831)
|- .....+...+.+.+--.|.+++|+-...+-+ +.|-. .....+..+...|...|+
T Consensus 89 gdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~ 168 (639)
T KOG1130|consen 89 GDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVT 168 (639)
T ss_pred cchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHH
Confidence 21 1133455667777888889988876654432 22211 123355566777766553
Q ss_pred --hHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCC-CCChhhHHHHHHHHHhc
Q 003315 256 --MQEAVEVFLEMEKA----GV-TPNAFAYSTCIEGLCMNGMLDLGYELLLKWEE----ADI-PLSAFAYTVVIRWFCDQ 323 (831)
Q Consensus 256 --~~~A~~~~~~m~~~----~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~ 323 (831)
++.|.+.|.+=++. |- -....+|..|...|.-.|+++.|+...+.-+. .|- ......+..+..+++-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 23344444432221 10 01123455555555566777777666544322 111 11234555666666666
Q ss_pred CCHhHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003315 324 NKLEKAECVLLHMEK----QGV-VPDVYAYSALISGYCKFGKINKALLLHHEM 371 (831)
Q Consensus 324 g~~~~A~~~~~~~~~----~~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~~ 371 (831)
|+++.|.+.++.... .|- .....+..+|...|.-..++++|+..+.+-
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 676666666554322 111 112233444555555556666666655543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.28 Score=53.68 Aligned_cols=180 Identities=16% Similarity=0.124 Sum_probs=113.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 003315 242 TYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAF--AYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRW 319 (831)
Q Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 319 (831)
....-+..+.+...++-|+.+.+. .+..++.. ......+-+.+.|++++|...|-+-+..- .|. .++.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EPS-----EVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-ChH-----HHHHH
Confidence 344556667777788888777654 23233322 23333445667888888887776655442 222 35666
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHH
Q 003315 320 FCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASAT 399 (831)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 399 (831)
|....+..+--.+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 67777778888888999888876 66777788999999999888877766544 2322 11234556666666666666
Q ss_pred HHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 400 IKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMK 442 (831)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (831)
.-+-..... +... +--.+...+++++|++.+..+.
T Consensus 483 ~~LA~k~~~-----he~v---l~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWV---LDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHhcc-----CHHH---HHHHHHHhcCHHHHHHHHhcCC
Confidence 555444333 2222 2233445688999998887764
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0016 Score=48.69 Aligned_cols=52 Identities=27% Similarity=0.271 Sum_probs=29.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 287 MNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
+.|++++|.+.|+++.... |.+..++..++.+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455556666666555553 445555556666666666666666666666554
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.012 Score=47.13 Aligned_cols=28 Identities=11% Similarity=0.194 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003315 328 KAECVLLHMEKQGVVPDVYAYSALISGY 355 (831)
Q Consensus 328 ~A~~~~~~~~~~~~~p~~~~~~~li~~~ 355 (831)
+.+.+++.|...+++|+..+|+.++..+
T Consensus 87 ~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 87 NLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3445555555555555555555555443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.12 Score=48.21 Aligned_cols=143 Identities=14% Similarity=0.085 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHH--
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVI-- 247 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~-- 247 (831)
..+.+.++..+.-.|.+.-.+.++..+++.+++.++.....+++.-...|+.+.|...|+++.+..-..|..+.+.++
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 346678888888999999999999999998877788888999999999999999999999877543344444444333
Q ss_pred ---HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH
Q 003315 248 ---KALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTV 315 (831)
Q Consensus 248 ---~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 315 (831)
..|.-.+++..|...+.+....+ +.|....|.-.-++.-.|+...|.+.++.++... |.+.+.++
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~es 324 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHES 324 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--Cccchhhh
Confidence 34556788999999999888765 4566666776667777899999999999999874 44444443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.11 Score=48.92 Aligned_cols=67 Identities=13% Similarity=0.123 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC--cChhhHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFV--WSICSCNYFMNQLVECGKVDMALAVYQHLKRLG 235 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 235 (831)
++......+..+...|++++|+..|+.+....+. --..+...++.++.+.|+++.|...|+++++.-
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4556678888889999999999999999876433 223456677888999999999999999988753
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.021 Score=55.72 Aligned_cols=95 Identities=15% Similarity=0.017 Sum_probs=56.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcC--hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC--CCChhhHHHHHHHH
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWS--ICSCNYFMNQLVECGKVDMALAVYQHLKRLGL--SLNEYTYVIVIKAL 250 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~ 250 (831)
.....+.+.|++++|+..|+.+++..+... ..++..++.+|...|++++|...|+.+.+... +.....+..++..+
T Consensus 148 ~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~ 227 (263)
T PRK10803 148 AAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIM 227 (263)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHH
Confidence 333333555677777777777666643321 24556666777777777777777777665320 11233444455556
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 003315 251 CKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 251 ~~~g~~~~A~~~~~~m~~~ 269 (831)
...|+.++|.+.|+++.+.
T Consensus 228 ~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 228 QDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6677777777777777664
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.039 Score=53.83 Aligned_cols=62 Identities=13% Similarity=-0.017 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCC--cChhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFV--WSICSCNYFMNQLVECGKVDMALAVYQHLKR 233 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 233 (831)
++..++.+|...|++++|+..|+.+++..+. ....++..++.++...|+.++|..+|+.+++
T Consensus 182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444444444444433211 1122233333444444455555555544444
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0074 Score=45.79 Aligned_cols=66 Identities=12% Similarity=0.147 Sum_probs=55.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003315 749 AKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSL 817 (831)
Q Consensus 749 ~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l 817 (831)
..|.+.+++++|++.++.++.. .+.++..|...+.++.+.|++++|.+.+++..+ ..|+......+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL-DPDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh-CcccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcHHHHHH
Confidence 4678999999999999999985 233577888899999999999999999999998 67877765543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.78 Score=46.77 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=40.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003315 561 YCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDK 626 (831)
Q Consensus 561 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 626 (831)
+..+|++.++.-.-..+.+- .|++.++..++-++...+++++|+.++..+ +|+..+++.
T Consensus 472 Lysqgey~kc~~ys~WL~~i--aPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKI--APSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHhcccHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 34567777776555444443 457788888888888888888888887754 667666664
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.06 Score=56.56 Aligned_cols=214 Identities=17% Similarity=0.180 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCC----CCcchHHHHHHHHHhcCCHHHHHHHH
Q 003315 433 KAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHK----PDIITYNVLAGAFAQYGAVQKAFDLL 508 (831)
Q Consensus 433 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~ 508 (831)
+-+.-+++++++|..|+... +...++.+|++.+|-++|.+--..+-. -|...| -..+-+...|..++-..+.
T Consensus 618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMF-D~aQE~~~~g~~~eKKmL~ 693 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMF-DYAQEFLGSGDPKEKKMLI 693 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHH-HHHHHHhhcCChHHHHHHH
Confidence 34444566777777676543 334456677777777777643111000 011111 1223333444444433333
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCccc
Q 003315 509 NYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSS 588 (831)
Q Consensus 509 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 588 (831)
++--+ ...+..--.+..+++...|+.++|..+.- .+|-.+-+.++-+++... +..+
T Consensus 694 RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~~------------------d~gW~d~lidI~rkld~~----ere~ 749 (1081)
T KOG1538|consen 694 RKRAD--WARNIKEPKAAAEMLISAGEHVKAIEICG------------------DHGWVDMLIDIARKLDKA----EREP 749 (1081)
T ss_pred HHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhhh------------------cccHHHHHHHHHhhcchh----hhhH
Confidence 32111 00011111233445556677776665431 122222222222222111 2333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-----------
Q 003315 589 CNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLV----------- 657 (831)
Q Consensus 589 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----------- 657 (831)
+..+..-+.+...+.-|.++|.+|-.. ..++......+++++|..+-+...+. .||+.
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEND 818 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhh
Confidence 344444444444455555555544321 12334444555555555554444332 22221
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003315 658 TYTMMIHGYCKINCLREARDVFNDMKQR 685 (831)
Q Consensus 658 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 685 (831)
-+.---.+|.+.|+-++|..+++++...
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1233345667778888888888887643
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.84 Score=46.36 Aligned_cols=421 Identities=10% Similarity=0.073 Sum_probs=212.7
Q ss_pred CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHH
Q 003315 114 SHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDIL 193 (831)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 193 (831)
+-|.-+|..+++-|...|..++..+++.++..- ++..+++|..-+..-...+++.....+|
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-------------------fp~~~~aw~ly~s~ELA~~df~svE~lf 99 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-------------------FPIMEHAWRLYMSGELARKDFRSVESLF 99 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-------------------CccccHHHHHHhcchhhhhhHHHHHHHH
Confidence 448889999999999999999999988885442 4557788989998888899999999999
Q ss_pred HHHHHcCCCcChhhHHHHHHHHHHcC-----C-hhHHHHHHHHHHh-cCCCCC-hhhHHHHHHHHH---hcC------Ch
Q 003315 194 FQINRRGFVWSICSCNYFMNQLVECG-----K-VDMALAVYQHLKR-LGLSLN-EYTYVIVIKALC---KKG------SM 256 (831)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~~~~~~~~-----~-~~~A~~~~~~~~~-~~~~~~-~~~~~~l~~~~~---~~g------~~ 256 (831)
.+.++.. .+...|...+.-..+.. + .....+.|+-... .++.|. ...|+..+..+- ..| +.
T Consensus 100 ~rCL~k~--l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqri 177 (660)
T COG5107 100 GRCLKKS--LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRI 177 (660)
T ss_pred HHHHhhh--ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHH
Confidence 9988864 34555655554333322 1 1223344544443 344443 234554443322 223 34
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHH------HHHHH-----HH--hcCChhHHHHHHHHHHHC--CC----CCChhhHHHHH
Q 003315 257 QEAVEVFLEMEKAGVTPNAFAYS------TCIEG-----LC--MNGMLDLGYELLLKWEEA--DI----PLSAFAYTVVI 317 (831)
Q Consensus 257 ~~A~~~~~~m~~~~~~p~~~~~~------~l~~~-----~~--~~~~~~~a~~~~~~~~~~--~~----~~~~~~~~~l~ 317 (831)
+.....+.+|+...+..=...|+ .=+.- +. ...-+-.|...++++... |+ +.+..+++...
T Consensus 178 d~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~ 257 (660)
T COG5107 178 DKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAA 257 (660)
T ss_pred HHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccc
Confidence 55666677776532111011111 11111 11 112234455566655432 22 22223333221
Q ss_pred H-----------HHHhcC-----CH--hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 003315 318 R-----------WFCDQN-----KL--EKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTN 379 (831)
Q Consensus 318 ~-----------~~~~~g-----~~--~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~ 379 (831)
+ .-...| +. ...--++++.... +.-....|.---.-+...++-++|+..... |++..
T Consensus 258 r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~r----g~~~s 332 (660)
T COG5107 258 RTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVER----GIEMS 332 (660)
T ss_pred ccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHh----cccCC
Confidence 1 000000 00 0000011111110 000111111111222334445555544333 33222
Q ss_pred HhhHHHHHHHHH-hcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCC
Q 003315 380 CGVLSVILKGLC-QKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCK---------LGEVEKAMILFKEMKDRQIVPD 449 (831)
Q Consensus 380 ~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~ 449 (831)
+. +...+.-|. ...+.+.+...|+...+ .|.+-|.+ -|+.+.-.+++-.-.. .-
T Consensus 333 ps-L~~~lse~yel~nd~e~v~~~fdk~~q-----------~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~----k~ 396 (660)
T COG5107 333 PS-LTMFLSEYYELVNDEEAVYGCFDKCTQ-----------DLKRKYSMGESESASKVDNNFEYSKELLLKRIN----KL 396 (660)
T ss_pred Cc-hheeHHHHHhhcccHHHHhhhHHHHHH-----------HHHHHHhhhhhhhhccccCCccccHHHHHHHHh----hh
Confidence 22 222233333 23333333333333221 11111110 1223222222211111 13
Q ss_pred hhhHHHHHHHHHccCChhhHHHHHHHHHHcC-CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003315 450 VVNYTTMICGYCLQGKLGDALDLFKEMKEMG-HKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIE 528 (831)
Q Consensus 450 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 528 (831)
...|...+..-.+..-.+.|..+|-++.+.+ +.+++..+++++..++. |+...|..+|+.-... ++.+...-...+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 4567777877778888899999999998887 67788889999987765 7888899999887665 2333333344555
Q ss_pred HHHcCCCHHHHHHHHHHhhhCC-----CCChHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 529 GLCMGGRVEEAEAFLDGLKGKC-----LENYSAMINGYCKTGHTKEAFQLFMRLS 578 (831)
Q Consensus 529 ~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 578 (831)
.+...++-+.|..+|+...++- ...|..++.--..-|+...+..+=+++.
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 6778888888998888554321 1124445544444555544444444443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.038 Score=50.42 Aligned_cols=116 Identities=15% Similarity=0.229 Sum_probs=78.7
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 003315 224 ALAVYQHLKRLGLSLNEYTYVIVIKALCKK-----GSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELL 298 (831)
Q Consensus 224 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 298 (831)
....|+..... ..+..+|..+++.+.+. |..+=....+..|.+.|+.-|..+|+.|++++=+ |.+-
T Consensus 33 ~~~~f~~~~~~--~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv------ 103 (228)
T PF06239_consen 33 HEELFERAPGQ--AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV------ 103 (228)
T ss_pred hHHHHHHHhhc--cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc------
Confidence 34555554322 46788888888888753 6677777788888888988899999988887654 2211
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003315 299 LKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGK 360 (831)
Q Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 360 (831)
|.. .+.+.-..| -.+-+-|.+++++|...|+.||..++..+++++.+.+.
T Consensus 104 ---------p~n-~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 104 ---------PRN-FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---------ccc-HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111 111111111 12456788999999999999999999999999866554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.039 Score=50.36 Aligned_cols=101 Identities=14% Similarity=0.177 Sum_probs=64.3
Q ss_pred CHhHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCc--hhhcccCHHHHHH
Q 003315 655 HLVTYTMMIHGYCK-----INCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPD--ALQCKEDVVDASV 727 (831)
Q Consensus 655 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~ 727 (831)
|-.+|..+++.|.+ .|..+=....+++|.+.|+.-|..+|+.||+.+=+-..... +... -..-..+.+-|++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~-n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPR-NFFQAEFMHYPRQQECAID 124 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccc-cHHHHHhccCcHHHHHHHH
Confidence 55555555655552 35566666667777777777777777777776644111000 0000 0012334567889
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003315 728 FWNEMKEMGIRPDVISYTVLIAKLCNTQN 756 (831)
Q Consensus 728 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 756 (831)
++++|...|+.||..++..+++.+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 99999999999999999999998877764
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.057 Score=53.57 Aligned_cols=285 Identities=16% Similarity=0.085 Sum_probs=142.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCcChh----hHHHHHHHHHHcCChhHHHHHHHHHH--h--cCCC-CChhhHHHH
Q 003315 176 MIKAYVSVGMFDEGIDILFQINRRGFVWSIC----SCNYFMNQLVECGKVDMALAVYQHLK--R--LGLS-LNEYTYVIV 246 (831)
Q Consensus 176 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~--~--~~~~-~~~~~~~~l 246 (831)
-+.-+++.|+.+..+.+|+.+++.|-. |.. .|..+.++|.-.+++++|+++...=+ . .|-+ ....+...|
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 345678999999999999999998743 443 46667788888899999988753311 1 1100 122233445
Q ss_pred HHHHHhcCChHHHHHHHHHHH----hCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 003315 247 IKALCKKGSMQEAVEVFLEME----KAGV-TPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFC 321 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~----~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (831)
.+.+--.|.+++|+-.-.+-+ +.|- ......+-.+..+|...|+--.... |.+...++.=+.
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----------pee~g~f~~ev~--- 168 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----------PEEKGAFNAEVT--- 168 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----------hhhcccccHHHH---
Confidence 555666777777765543322 2221 1223445555666655543211000 000000100000
Q ss_pred hcCCHhHHHHHHHHHH----HCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCC-CCHhhHHHHHHHHH
Q 003315 322 DQNKLEKAECVLLHME----KQGV-VPDVYAYSALISGYCKFGKINKALLLHHEMTS----KGIK-TNCGVLSVILKGLC 391 (831)
Q Consensus 322 ~~g~~~~A~~~~~~~~----~~~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~~~~~ll~~~~ 391 (831)
..++.|.+.|.+=. +.|- -.....|..|...|.-.|+++.|+...+.-+. -|-+ .....+..+..++.
T Consensus 169 --~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi 246 (639)
T KOG1130|consen 169 --SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI 246 (639)
T ss_pred --HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh
Confidence 11233333333211 1110 01223456666677777888888877655432 1211 11234455566666
Q ss_pred hcCChHHHHHHHHHHHHC----C-CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCChhhHHHHHHHHH
Q 003315 392 QKGMASATIKQFLEFKDM----G-FFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDR-----QIVPDVVNYTTMICGYC 461 (831)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~ 461 (831)
-.|+++.|.+.|+..... | ........-.|.+.|.-..++++|+..+.+-... ...-....+.+|..+|.
T Consensus 247 flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 247 FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN 326 (639)
T ss_pred hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 667777777766653221 1 1122333444555555555666666555432110 01113344555555666
Q ss_pred ccCChhhHHHHHHHH
Q 003315 462 LQGKLGDALDLFKEM 476 (831)
Q Consensus 462 ~~g~~~~A~~~~~~~ 476 (831)
..|..++|+...+.-
T Consensus 327 alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 327 ALGEHRKALYFAELH 341 (639)
T ss_pred hhhhHHHHHHHHHHH
Confidence 666666665555443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.014 Score=44.18 Aligned_cols=56 Identities=14% Similarity=0.099 Sum_probs=33.8
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 178 KAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 178 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
..|.+.+++++|+.+++++++.++. ++..+.....++.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455666666666666666666533 5555555666666666666666666666654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.74 Score=46.89 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003315 743 SYTVLIAKLCNTQNLEDGITVFNEISDR 770 (831)
Q Consensus 743 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 770 (831)
.+.+++.+..-.|+.++|.+..++|...
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3355666666666666666666666653
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.59 Score=47.61 Aligned_cols=106 Identities=11% Similarity=0.096 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC---CCcChhhHHHHHHHHHH---cCChhHHHHHHHHHHhcCCCCChhh
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRG---FVWSICSCNYFMNQLVE---CGKVDMALAVYQHLKRLGLSLNEYT 242 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~ 242 (831)
++.+...++-+|...++|+.-+.+.+.+.... .......--..+-++.+ .|+.++|++++..++.....+++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 55566677778999999999999999887652 11123333345556667 7999999999999665555788889
Q ss_pred HHHHHHHHHh---------cCChHHHHHHHHHHHhCCCCCCHH
Q 003315 243 YVIVIKALCK---------KGSMQEAVEVFLEMEKAGVTPNAF 276 (831)
Q Consensus 243 ~~~l~~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~ 276 (831)
|..+.+.|-. ....++|+..|.+.-+. .||..
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y 260 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYY 260 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--Ccccc
Confidence 9888887753 12356677777766544 34443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.47 E-value=1.1 Score=44.74 Aligned_cols=117 Identities=14% Similarity=0.072 Sum_probs=59.5
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhcCCHHHHHHHHHH---HHhCCCCCCcccHHHHHHHHHhcCCHHHH
Q 003315 529 GLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMR---LSNQGVLVKKSSCNKLITNLLILRDNNNA 605 (831)
Q Consensus 529 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 605 (831)
.+.+.|++.++-++++.+-+..|..--...+.+.+.|+.. +.-+++ +....+ .+..+...+.++-...|++..|
T Consensus 272 alf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta--~dRlkRa~~L~slk~-nnaes~~~va~aAlda~e~~~A 348 (531)
T COG3898 272 ALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTA--LDRLKRAKKLESLKP-NNAESSLAVAEAALDAGEFSAA 348 (531)
T ss_pred HHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcH--HHHHHHHHHHHhcCc-cchHHHHHHHHHHHhccchHHH
Confidence 4445555555555555554444444333333344444321 111111 111111 1444555555666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHC
Q 003315 606 LKLFKTMITLNAEPSKSMYDKLIGALC-QAEEMEQAQLVFNVLVDK 650 (831)
Q Consensus 606 ~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~ 650 (831)
..--+.+... .|....|..|.+.-. ..|+-.+++..+.+.++.
T Consensus 349 Ra~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 349 RAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 5555544433 566677776666543 347777888777777764
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.065 Score=47.48 Aligned_cols=70 Identities=21% Similarity=0.315 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHh-----cCCCCChhh
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKR-----LGLSLNEYT 242 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~ 242 (831)
+...++..+...|++++|+...++++..+|- +...+..++.+|...|+...|.++|+.+.+ .|+.|++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555566666666666666666666533 566666666666666666666666665532 355555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0087 Score=46.13 Aligned_cols=63 Identities=19% Similarity=0.247 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 742 ISYTVLIAKLCNTQNLEDGITVFNEISDR--GLE---PD-TVTYTALLCGYLAKGDLDRAIALVDEMSV 804 (831)
Q Consensus 742 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~---pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 804 (831)
.+|+.+..+|...|++++|++.+++..+. ... |+ ..++..++.+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 47899999999999999999999998753 122 22 45788999999999999999999998765
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.30 E-value=2.2 Score=46.51 Aligned_cols=123 Identities=16% Similarity=0.140 Sum_probs=69.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHH--------HcCCCcChhhH-----HHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhh
Q 003315 176 MIKAYVSVGMFDEGIDILFQIN--------RRGFVWSICSC-----NYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYT 242 (831)
Q Consensus 176 l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 242 (831)
+++++.+..++++-+.+.+.+. ..|++....-| ..+++-++..+.+..|.++-+.+...-. .+...
T Consensus 395 fGk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~-~~~~V 473 (829)
T KOG2280|consen 395 FGKASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPES-QGDRV 473 (829)
T ss_pred hcccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccc-cccHH
Confidence 3444555556666555554432 23444333333 3456777888899999998877653211 11445
Q ss_pred HHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003315 243 YVIVIKALCKKGS--MQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLK 300 (831)
Q Consensus 243 ~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (831)
|.....-+.+..+ -+++++..++=..... -+...|..+.+--...|+.+-|..+++.
T Consensus 474 l~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 474 LLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred HHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 5555666665532 2333333333222212 3445677777777788998888887764
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.063 Score=46.91 Aligned_cols=99 Identities=8% Similarity=-0.102 Sum_probs=79.2
Q ss_pred cccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003315 718 CKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIA 797 (831)
Q Consensus 718 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~ 797 (831)
..|++++|..+|+-+...+ .-|...|..|..++-..+++++|+..|..+...+ .-|+......+.+|...|+.+.|+.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHH
Confidence 4689999999999988644 3355677888888999999999999999988754 3577778889999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHH
Q 003315 798 LVDEMSVKGIQGDDYTKSSLERGI 821 (831)
Q Consensus 798 ~~~~~~~~g~~pd~~~~~~l~~~~ 821 (831)
.|+.... .|...........+
T Consensus 127 ~f~~a~~---~~~~~~l~~~A~~~ 147 (165)
T PRK15331 127 CFELVNE---RTEDESLRAKALVY 147 (165)
T ss_pred HHHHHHh---CcchHHHHHHHHHH
Confidence 9999887 46555554433333
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.93 Score=41.30 Aligned_cols=65 Identities=9% Similarity=-0.002 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
.+.+|+.|+--+...|+++.|.+.|+...+.++.-+ .+...-.-.+.--|++..|.+-|...-+.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 455677777666777777777777777776664422 22222222333456677776666655543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.79 Score=42.63 Aligned_cols=22 Identities=14% Similarity=0.043 Sum_probs=10.7
Q ss_pred HHHHHHHHhcCCHhHHHHHHHH
Q 003315 314 TVVIRWFCDQNKLEKAECVLLH 335 (831)
Q Consensus 314 ~~l~~~~~~~g~~~~A~~~~~~ 335 (831)
...|-.+.-..++..|++.++.
T Consensus 194 va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 194 VAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHHHHHhhHHHHHHHHHHhcc
Confidence 3333444444455555555555
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.21 E-value=1.1 Score=41.83 Aligned_cols=180 Identities=16% Similarity=0.122 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
-...|.....+|...+++++|...+.++.+-. ..+... +-..+.++.|.-+.+++.+. +--+..|+--..
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~y-Ennrsl-------fhAAKayEqaamLake~~kl--sEvvdl~eKAs~ 99 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSL-------FHAAKAYEQAAMLAKELSKL--SEVVDLYEKASE 99 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccH-------HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHH
Confidence 34577788889999999999999888877432 212221 22234456666677776653 223445666677
Q ss_pred HHHhcCChHHHHHHHHHHHhC--CCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 003315 249 ALCKKGSMQEAVEVFLEMEKA--GVTPNAF--AYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQN 324 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~--~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 324 (831)
.|..+|..+.|-..++++-+. ++.|+.. .|..-+......++...|. ..+....+++++..
T Consensus 100 lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~---------------el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF---------------ELYGKCSRVLVRLE 164 (308)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH---------------HHHHHhhhHhhhhH
Confidence 888999998888888776542 3344432 2222222222223322332 33444566777777
Q ss_pred CHhHHHHHHHHHHHCC----CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 325 KLEKAECVLLHMEKQG----VVPDV-YAYSALISGYCKFGKINKALLLHHEMTS 373 (831)
Q Consensus 325 ~~~~A~~~~~~~~~~~----~~p~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~ 373 (831)
++++|-..|.+-.... -.++. ..|...|-.|.-..++..|...++.--+
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence 7777766655433210 01121 3355566667777788888887776444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.12 Score=49.28 Aligned_cols=92 Identities=15% Similarity=0.062 Sum_probs=45.6
Q ss_pred HHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-c-C
Q 003315 127 LCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFV-W-S 204 (831)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-~ 204 (831)
+...|++..|...|...++..|+ ....+.++.-|+.++...|++++|...|..+.+.-++ | -
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~----------------s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA 214 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPN----------------STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA 214 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCC----------------CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC
Confidence 33444455555555555554332 2334445555555555555555555555555543222 1 1
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 205 ICSCNYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
+.++..+..+..+.|+.++|..+|+++.+.
T Consensus 215 pdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 215 PDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 234444555555555555555555555543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.045 Score=56.18 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003315 740 DVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDT----VTYTALLCGYLAKGDLDRAIALVDEMSVK 805 (831)
Q Consensus 740 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 805 (831)
+...|+.+..+|.+.|++++|+..|++.++ +.|+. .+|+.+..+|...|+.++|++.+++.++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 446899999999999999999999999997 57774 35999999999999999999999998874
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.21 Score=43.80 Aligned_cols=94 Identities=9% Similarity=-0.079 Sum_probs=63.2
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 003315 120 YAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR 199 (831)
Q Consensus 120 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 199 (831)
....+.-+-..|++++|..+|+.+...++ .+++-+..|+.++-..|++++|+..|..+...
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-------------------~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l 100 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDF-------------------YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL 100 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445555667777777777776655432 24556667777777777888888877776655
Q ss_pred CCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003315 200 GFVWSICSCNYFMNQLVECGKVDMALAVYQHLKR 233 (831)
Q Consensus 200 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 233 (831)
+. .|+...-.....+...|+.+.|...|+...+
T Consensus 101 ~~-~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 101 LK-NDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cc-CCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 53 2555555667777777788888877777765
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.13 E-value=1 Score=41.01 Aligned_cols=186 Identities=14% Similarity=0.070 Sum_probs=111.4
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH
Q 003315 180 YVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEA 259 (831)
Q Consensus 180 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (831)
|-..|-++-|..-|.+.+...+. -+.++|.+.--+...|+++.|.+.|+...+.+..-+-...|.-|..| --|++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhh
Confidence 44455566666667777766644 66789999999999999999999999999865222222333333322 47899999
Q ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHH-HHHHHCCCCCChhhHHH-HHHHHHhcCCHhHHHHHHHHH
Q 003315 260 VEVFLEMEKAGV-TPNAFAYSTCIEGLCMNGMLDLGYELL-LKWEEADIPLSAFAYTV-VIRWFCDQNKLEKAECVLLHM 336 (831)
Q Consensus 260 ~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~ 336 (831)
.+-|...-+.+. .|-...|.-+ -...-++.+|..-+ ++.... +..-|.. ++..|...=..+. +++++
T Consensus 153 q~d~~~fYQ~D~~DPfR~LWLYl---~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e~---l~~~~ 222 (297)
T COG4785 153 QDDLLAFYQDDPNDPFRSLWLYL---NEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEET---LMERL 222 (297)
T ss_pred HHHHHHHHhcCCCChHHHHHHHH---HHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHHH---HHHHH
Confidence 988877766531 2222333322 23445666665544 333332 2233322 2333332222222 33333
Q ss_pred HHCCCC------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 003315 337 EKQGVV------PDVYAYSALISGYCKFGKINKALLLHHEMTSKGIK 377 (831)
Q Consensus 337 ~~~~~~------p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 377 (831)
....-. .=..+|--|...+...|+.++|..+|+-.+..++.
T Consensus 223 ~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVy 269 (297)
T COG4785 223 KADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVY 269 (297)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHH
Confidence 321110 12457888999999999999999999988876543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.12 E-value=1.3 Score=42.02 Aligned_cols=79 Identities=13% Similarity=0.022 Sum_probs=44.6
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 003315 122 AIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGF 201 (831)
Q Consensus 122 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 201 (831)
.-+....+.|++++|...|..+....| ..+..+.+...++.++.+.+++++|+...++.++..+
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p----------------~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP 102 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRHP----------------FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP 102 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC----------------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Confidence 333444556666666666666554422 2344556666777777777777777777777666544
Q ss_pred CcChhhHHHHHHHHH
Q 003315 202 VWSICSCNYFMNQLV 216 (831)
Q Consensus 202 ~~~~~~~~~l~~~~~ 216 (831)
...-..|-..+.+++
T Consensus 103 ~~~n~dY~~YlkgLs 117 (254)
T COG4105 103 THPNADYAYYLKGLS 117 (254)
T ss_pred CCCChhHHHHHHHHH
Confidence 322223444444444
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.13 Score=53.06 Aligned_cols=67 Identities=6% Similarity=-0.189 Sum_probs=59.0
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcCh---hhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSI---CSCNYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
+.++.+++.++.+|...|++++|+..|+++++.++. +. .++..+..+|...|+.++|+..+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457789999999999999999999999999998755 33 35889999999999999999999999874
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.87 Score=43.97 Aligned_cols=53 Identities=19% Similarity=0.166 Sum_probs=26.2
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 003315 179 AYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLK 232 (831)
Q Consensus 179 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 232 (831)
.....|++.+|...|..+...... +......++..|...|+.+.|..++..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 334455555555555555544433 33344445555555555555555555543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.84 Score=44.04 Aligned_cols=154 Identities=16% Similarity=0.128 Sum_probs=111.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 003315 212 MNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGML 291 (831)
Q Consensus 212 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 291 (831)
.......|++.+|...|....... +.+...-..++..|...|+.+.|..++..+...--.........-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 345667889999999999988754 3456677788999999999999999999876542222223323345666666666
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003315 292 DLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQ--GVVPDVYAYSALISGYCKFGKINKALLLHH 369 (831)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 369 (831)
.+...+-+++-.. |.|......+...+...|+.++|.+.+-.+.+. |.. |...-..|+..+.-.|.-+.+...++
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 6666666655553 668889999999999999999999888777664 333 66777888888888776555444443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.068 Score=47.33 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 003315 743 SYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSV-----KGIQGDDYTKS 815 (831)
Q Consensus 743 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~pd~~~~~ 815 (831)
+...++..+...|++++|+++.+++... -+-|...|..++.+|...|+..+|.+.|+++.+ .|+.|+..+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 4556777888999999999999999984 344688999999999999999999999998753 49999988655
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.93 E-value=3.6 Score=45.60 Aligned_cols=76 Identities=12% Similarity=0.138 Sum_probs=45.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----HHhCCCCCCHHHHHHHHHHHH
Q 003315 747 LIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDE----MSVKGIQGDDYTKSSLERGIE 822 (831)
Q Consensus 747 l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~g~~pd~~~~~~l~~~~~ 822 (831)
++..++...+.+.++.+.+..- +-|+..|..++..+.+.+.++.-.+..++ +.....-|... ++..+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g----~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~----VL~~La 782 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLG----KEDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLH----VLQILA 782 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhC----ccChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHH----HHHHHh
Confidence 3445667777777777666653 33788888888888888755544444443 33434444444 455666
Q ss_pred hccccccc
Q 003315 823 KARILQYR 830 (831)
Q Consensus 823 ~~~~~~~~ 830 (831)
|.+.+.|.
T Consensus 783 kn~~ltls 790 (933)
T KOG2114|consen 783 KNGTLTLS 790 (933)
T ss_pred cCCceEEe
Confidence 66655443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.82 E-value=2.3 Score=42.42 Aligned_cols=62 Identities=16% Similarity=0.187 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHcCCh---hHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 207 SCNYFMNQLVECGKV---DMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 207 ~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 269 (831)
++..++.++...+.. ++|..+++.+.+.. +..+..+..-++.+.+.++.+.+.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 344455555555543 34455555554321 222444444555555566677777777777654
|
It is also involved in sporulation []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.06 Score=41.37 Aligned_cols=70 Identities=10% Similarity=0.165 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003315 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQI 196 (831)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 196 (831)
..++..++.++...|++++|...+.+.++..... ++..+....++..++.+|...|++++|++.++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQL------------GDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT------------TTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH------------CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567889999999999999999999887651110 0111224668899999999999999999999987
Q ss_pred HH
Q 003315 197 NR 198 (831)
Q Consensus 197 ~~ 198 (831)
.+
T Consensus 73 l~ 74 (78)
T PF13424_consen 73 LD 74 (78)
T ss_dssp HH
T ss_pred Hh
Confidence 65
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.72 E-value=2.7 Score=42.52 Aligned_cols=84 Identities=21% Similarity=0.230 Sum_probs=50.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhcCC
Q 003315 487 TYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGH 566 (831)
Q Consensus 487 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 566 (831)
+.+..+.-+...|+...|.++-.+.. .|+...|-..+.+++..++|++-+++-.. ++.|..|...+..+.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCC
Confidence 44444555566666666666554442 45666666666777777777766665432 4455556666666666666
Q ss_pred HHHHHHHHHH
Q 003315 567 TKEAFQLFMR 576 (831)
Q Consensus 567 ~~~A~~~~~~ 576 (831)
..+|..++.+
T Consensus 253 ~~eA~~yI~k 262 (319)
T PF04840_consen 253 KKEASKYIPK 262 (319)
T ss_pred HHHHHHHHHh
Confidence 6666665544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.26 Score=49.55 Aligned_cols=141 Identities=13% Similarity=0.011 Sum_probs=93.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003315 556 AMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAE 635 (831)
Q Consensus 556 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 635 (831)
.-+..|.+.|++..|...|+++...=. +.+.-+.++..... ..-..+++.+.-+|.+.+
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~-------------~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLE-------------YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLK 271 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhh-------------ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhh
Confidence 346677777777777777776543210 00001111111111 111235666777889999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCch
Q 003315 636 EMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDA 715 (831)
Q Consensus 636 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~ 715 (831)
++..|...-++.+..+.. |....-.=..++...|.++.|+..|+++++ +.|+......-+..|..
T Consensus 272 ~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~------------ 336 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQ------------ 336 (397)
T ss_pred hHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHH------------
Confidence 999999999999987544 777777888899999999999999999997 67877777766666654
Q ss_pred hhcccCHHHHHHHHHHHH
Q 003315 716 LQCKEDVVDASVFWNEMK 733 (831)
Q Consensus 716 ~~~~~~~~~a~~~~~~m~ 733 (831)
+.++..++..++|..|.
T Consensus 337 -k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 337 -KIREYEEKEKKMYANMF 353 (397)
T ss_pred -HHHHHHHHHHHHHHHHh
Confidence 12233445577777776
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.23 Score=42.06 Aligned_cols=82 Identities=21% Similarity=0.111 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 740 DVISYTVLIAKLCNTQNLEDGITVFNEISDR---------------GLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSV 804 (831)
Q Consensus 740 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 804 (831)
|..++.+++.++++.|+++...++++..-.- ...|+..+..+++.+|+..|++..|+++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4567888999999999999999998875321 2467889999999999999999999999999865
Q ss_pred C-CCCCCHHHHHHHHHHH
Q 003315 805 K-GIQGDDYTKSSLERGI 821 (831)
Q Consensus 805 ~-g~~pd~~~~~~l~~~~ 821 (831)
. +++-+..+|..|++=.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HcCCCCCHHHHHHHHHHH
Confidence 4 8888888888887733
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.31 Score=41.66 Aligned_cols=86 Identities=15% Similarity=0.147 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC--cChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFV--WSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
++..+..-+....+.|++++|++.|+.+...-+. -...+...++.++.+.+++++|...++++++....-....|-..
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 4566677788889999999999999998876432 23445677889999999999999999999986532223456555
Q ss_pred HHHHHhcC
Q 003315 247 IKALCKKG 254 (831)
Q Consensus 247 ~~~~~~~g 254 (831)
+.+++...
T Consensus 89 ~~gL~~~~ 96 (142)
T PF13512_consen 89 MRGLSYYE 96 (142)
T ss_pred HHHHHHHH
Confidence 66655433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.028 Score=37.27 Aligned_cols=40 Identities=18% Similarity=0.022 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHH
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYF 211 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 211 (831)
.++..++..|.+.|++++|+++|+++++..+. |...+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 45667888888888888888888888887644 55555444
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.2 Score=50.28 Aligned_cols=124 Identities=15% Similarity=-0.040 Sum_probs=79.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhC-----CC---------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhH
Q 003315 248 KALCKKGSMQEAVEVFLEMEKA-----GV---------TPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAY 313 (831)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~-----~~---------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 313 (831)
+.|.+.|++..|...|++++.. +. ..-..+++.+.-++.+.+++.+|++.-.+.+..+ +.|+...
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 3455555665555555554331 00 1122356667777888888888888888888876 6777777
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH-HHHHHHHHHHh
Q 003315 314 TVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKIN-KALLLHHEMTS 373 (831)
Q Consensus 314 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~-~A~~~~~~~~~ 373 (831)
..-.+++...|+++.|+..|+++.+..+. |-..-+.|+.+..+..+.. +..++|..|..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77888888888888888888888876433 4444555555554444443 33667777654
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.67 Score=38.49 Aligned_cols=66 Identities=17% Similarity=0.274 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003315 622 SMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGIT 688 (831)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 688 (831)
......++.+.++|+-++-.++...+.+ +-++++...-.+..+|.+.|+..++-+++++.-++|++
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3344455666777777777777777764 23567777777777777888877777777777776653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.65 Score=38.38 Aligned_cols=95 Identities=16% Similarity=0.024 Sum_probs=68.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChh---hHHHHHHHHH
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEY---TYVIVIKALC 251 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~ 251 (831)
.-+.+.+..|+++.|++.|.+.+..-+. ...+||.-.+++.-+|+.++|+.-+++.++..-+.+.. .|..-...|.
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 4455667788888888888888877544 77788888888888888888888888877643222222 2333344566
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 003315 252 KKGSMQEAVEVFLEMEKAG 270 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~ 270 (831)
..|+-+.|..-|+...+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 7788888888888877766
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.39 E-value=3.3 Score=41.30 Aligned_cols=62 Identities=10% Similarity=0.021 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 277 AYSTCIEGLCMNGMLD---LGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 277 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
++..++.+|...+..+ +|..+++.+... .+..+.++..-++.+.+.++.+++.+++.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4555666666665544 344455555333 2333555555566666677777777777777765
|
It is also involved in sporulation []. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.38 E-value=2.6 Score=40.05 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=29.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003315 250 LCKKGSMQEAVEVFLEMEKAGV--TPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEA 304 (831)
Q Consensus 250 ~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (831)
-.+.|++++|.+.|+.+..... +-...+...++.++.+.+++++|+...++.+..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3456666666666666654310 112234444555555666666666666665554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.22 E-value=2.8 Score=43.75 Aligned_cols=147 Identities=10% Similarity=0.047 Sum_probs=79.5
Q ss_pred ChHHHHHHHHhccCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCC---CchhH---H
Q 003315 83 NTREVVEKLYSLRKEPKIALSFFEQLKRSGFSHN-LCTYAAIVRILCCCGWQKKLESMLLELVRKKTD---ANFEA---T 155 (831)
Q Consensus 83 ~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~---~ 155 (831)
.+..-+..-+-+..+|..-...-+++.+. .|+ +..|..++.- .+....++..++++.++.... .+... .
T Consensus 169 r~Aq~IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g 244 (539)
T PF04184_consen 169 RPAQEIMQKAWRERNPQARIKAAKEALEI--NPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHG 244 (539)
T ss_pred CHHHHHHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhccc
Confidence 33333333344556777777766666654 222 2333222211 133456788888887765321 00000 0
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-cChhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003315 156 DLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFV-WSICSCNYFMNQLVECGKVDMALAVYQHLKR 233 (831)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 233 (831)
...+.+..++..+...+-..++.+.-+.|+.++|++.++.+.+..+. .+......++..+...+++.++..++.+-.+
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 01122223333344445556666667778888888887777765432 2344566677777777777777777776543
|
The molecular function of this protein is uncertain. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.73 Score=39.45 Aligned_cols=85 Identities=14% Similarity=0.037 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
++..+..-+......|++++|...+..+....|- .+..+.+-..|+.+|.+.+++++|+..+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~----------------g~ya~qAqL~l~yayy~~~~y~~A~a~~~r 72 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPF----------------GEYAEQAQLDLAYAYYKQGDYEEAIAAYDR 72 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC----------------CcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4555666777788899999999988887666442 234566778999999999999999999999
Q ss_pred HHHcCCCcChhhHHHHHHHHH
Q 003315 196 INRRGFVWSICSCNYFMNQLV 216 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~ 216 (831)
.++..+..--..|-..+.+++
T Consensus 73 FirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 73 FIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHhCCCCCCccHHHHHHHHH
Confidence 999876533333444444443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=1.4 Score=45.77 Aligned_cols=110 Identities=11% Similarity=0.034 Sum_probs=77.0
Q ss_pred ChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 003315 185 MFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFL 264 (831)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 264 (831)
...+|.+..+++.+.+.. |..+...+..++.-.++++.|...|++....+ |....+|........-.|+.++|.+.++
T Consensus 319 ~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456778888888888844 88888888888888888999999999988764 2334566666666777899999999999
Q ss_pred HHHhCCCCCCHHHH---HHHHHHHHhcCChhHHHHHHH
Q 003315 265 EMEKAGVTPNAFAY---STCIEGLCMNGMLDLGYELLL 299 (831)
Q Consensus 265 ~m~~~~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~ 299 (831)
+..+. .|..... ...++.|+..+ .++|..+|-
T Consensus 397 ~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 397 KSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 97765 4544322 22233444433 455555553
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.59 Score=44.65 Aligned_cols=58 Identities=21% Similarity=0.279 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC------hHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003315 522 THNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN------YSAMINGYCKTGHTKEAFQLFMRLSNQ 580 (831)
Q Consensus 522 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~ 580 (831)
.|+..+. +.+.|++.+|+..|....+..|.+ +.-|+.++...|++++|...|..+.+.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~ 207 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD 207 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence 4554443 345556666666666666655443 333555555555555555555555444
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.98 E-value=2.2 Score=42.20 Aligned_cols=161 Identities=11% Similarity=0.032 Sum_probs=82.0
Q ss_pred ccCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHH
Q 003315 94 LRKEPKIALSFFEQLKRS--GFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTR 171 (831)
Q Consensus 94 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (831)
+.++...|+....+...+ +....-.++..+..+.+..|++++++......+....+. .+....-.
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~-------------~ds~~~~e 84 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL-------------EDSDFLLE 84 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHH
Confidence 345677777776665532 111123344555666777777777665544333321110 01122334
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCc---ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC-----CChhh
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRG-FVW---SICSCNYFMNQLVECGKVDMALAVYQHLKRLGLS-----LNEYT 242 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~ 242 (831)
+|..+.+++-+.-++.+++.+-..-.... -.+ -......+.+++...+.++++++.|+...+.... .....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 66677777777777777666544433221 111 1122334555555566666666666665532110 11235
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 243 YVIVIKALCKKGSMQEAVEVFLEME 267 (831)
Q Consensus 243 ~~~l~~~~~~~g~~~~A~~~~~~m~ 267 (831)
+..|...|.+..++++|+-...++.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~ 189 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAA 189 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHH
Confidence 5566666666666666665555544
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=94.98 E-value=8.2 Score=43.64 Aligned_cols=203 Identities=13% Similarity=0.056 Sum_probs=99.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC-CC-----HHHHHHH--HHHHHhcCCHHHHHHHHH--------HHHHCCCCCCH
Q 003315 593 ITNLLILRDNNNALKLFKTMITLNAE-PS-----KSMYDKL--IGALCQAEEMEQAQLVFN--------VLVDKGLTPHL 656 (831)
Q Consensus 593 ~~~~~~~~~~~~a~~~~~~~~~~~~~-p~-----~~~~~~l--~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~ 656 (831)
++..+-.+++..+...++.+.....+ |+ ...+..+ +-.+...|+++.|...|. .....+...+.
T Consensus 368 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El 447 (608)
T PF10345_consen 368 IWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFREL 447 (608)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHH
Confidence 34455678888888888887754321 11 1222222 223445799999999997 44455445444
Q ss_pred hHHHH--HHHHHHHcCC--HHH--HHHHHHHHHHC-CCCC--CHHHHHH-HHHHhhccccCCCCCCCchhhcccCHHHHH
Q 003315 657 VTYTM--MIHGYCKINC--LRE--ARDVFNDMKQR-GITP--DVVTYTV-LFDAHSKINLKGSSSSPDALQCKEDVVDAS 726 (831)
Q Consensus 657 ~~~~~--l~~~~~~~g~--~~~--A~~~~~~m~~~-~~~p--~~~~~~~-ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 726 (831)
..+.. ++..+...+. .++ +.++++.+... .-.| +..++.. ++.++..... ......+..+.+++
T Consensus 448 ~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~ne~k~~l~~~L 521 (608)
T PF10345_consen 448 YILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEP------FSSNEAKRHLQEAL 521 (608)
T ss_pred HHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCc------cccHHHHHHHHHHH
Confidence 44432 2222222222 223 66666665432 1122 3333333 3333322110 00001222333444
Q ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC--HHHHH-----HHHHHHHhcCCHHHHHH
Q 003315 727 VFWNEMKEMGIR-PDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLE-PD--TVTYT-----ALLCGYLAKGDLDRAIA 797 (831)
Q Consensus 727 ~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-pd--~~~~~-----~l~~~~~~~g~~~~A~~ 797 (831)
+.. ....+.. --...++.+...+. .|+..+..+.........-+ || ...|. .+...+...|+.++|.+
T Consensus 522 ~~~--~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~ 598 (608)
T PF10345_consen 522 KMA--NNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEE 598 (608)
T ss_pred HHH--HHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 443 0111111 11123454444444 78888876666654422111 23 34453 34455778899999999
Q ss_pred HHHHHHh
Q 003315 798 LVDEMSV 804 (831)
Q Consensus 798 ~~~~~~~ 804 (831)
...+...
T Consensus 599 ~~~~~~~ 605 (608)
T PF10345_consen 599 ARQQLDR 605 (608)
T ss_pred HHHHHHH
Confidence 8877654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.45 Score=39.28 Aligned_cols=91 Identities=15% Similarity=0.005 Sum_probs=73.1
Q ss_pred HHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcCh
Q 003315 126 ILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSI 205 (831)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 205 (831)
.+...|+.+.|++.|.+.+...|. .+.+|+.-++++.-.|+.++|++-+.++++.......
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-------------------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~tr 112 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-------------------RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTR 112 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-------------------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccch
Confidence 466788999999999998888655 5678999999999999999999999999886433333
Q ss_pred hhH---HHHHHHHHHcCChhHHHHHHHHHHhcC
Q 003315 206 CSC---NYFMNQLVECGKVDMALAVYQHLKRLG 235 (831)
Q Consensus 206 ~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~ 235 (831)
..+ -.-...|...|+-+.|..-|+...+.|
T Consensus 113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 333 334456778899999999999988876
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.65 E-value=1.5 Score=47.27 Aligned_cols=137 Identities=13% Similarity=0.104 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHH----cCChhHHHHHHH
Q 003315 119 TYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVS----VGMFDEGIDILF 194 (831)
Q Consensus 119 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~ 194 (831)
...+++.++...|+-+..+++++...+...-..+ +.. ...-.|...+..++. ....+.|.+++.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~-----la~-------L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~ 257 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSP-----LAA-------LVLLWYHLVVPSFLGIDGEDVPLEEAEELLE 257 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchH-----HHH-------HHHHHHHHHHHHHcCCcccCCCHHHHHHHHH
Confidence 3445666666666666666666654442111000 000 011233333333322 234555666666
Q ss_pred HHHHcCCCcChhhH-HHHHHHHHHcCChhHHHHHHHHHHhc--CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 195 QINRRGFVWSICSC-NYFMNQLVECGKVDMALAVYQHLKRL--GL-SLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 195 ~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 269 (831)
.+.+.- |+...+ -.-.+.+...|+.++|++.|+..... .. +.....+..++..+.-.++|++|.+.|..+.+.
T Consensus 258 ~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 258 EMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 666553 222222 22334555566666666666654321 00 011223334444555566666666666666654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.62 E-value=1.6 Score=47.12 Aligned_cols=116 Identities=15% Similarity=-0.032 Sum_probs=55.9
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChHHHH
Q 003315 289 GMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQG---VVPDVYAYSALISGYCKFGKINKAL 365 (831)
Q Consensus 289 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~li~~~~~~~~~~~A~ 365 (831)
.+.+.|.++++.+.++- |........-.+.+...|++++|.+.|++..... .+.....+-.+.-.+.-.++|++|.
T Consensus 247 ~~~~~a~~lL~~~~~~y-P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRY-PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 34455666666665552 3333333344555556666666666666543210 0112223334455555666666666
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHH-HHhcCCh-------HHHHHHHHHH
Q 003315 366 LLHHEMTSKGIKTNCGVLSVILKG-LCQKGMA-------SATIKQFLEF 406 (831)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~-------~~a~~~~~~~ 406 (831)
+.|..+.+..-. +..+|..+..+ +...++. ++|.+.+.++
T Consensus 326 ~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 326 EYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 666666654322 22223222222 2234444 5666666554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=2.7 Score=43.80 Aligned_cols=162 Identities=10% Similarity=0.028 Sum_probs=103.4
Q ss_pred hhH--HHHHHHHHHc--C---ChhHHHHHHHHHHhc-CCCCC-hhhHHHHHHHHHh---------cCChHHHHHHHHHHH
Q 003315 206 CSC--NYFMNQLVEC--G---KVDMALAVYQHLKRL-GLSLN-EYTYVIVIKALCK---------KGSMQEAVEVFLEME 267 (831)
Q Consensus 206 ~~~--~~l~~~~~~~--~---~~~~A~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~m~ 267 (831)
..| ...+++.... + ..+.|+.+|.+.... ...|+ ...|..+...+.. .....+|.+..++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 4455554442 1 346788889998821 22343 3444444433321 233566777788888
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHH-
Q 003315 268 KAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVY- 346 (831)
Q Consensus 268 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~- 346 (831)
+.+ +-|..+...+..++.-.++++.|...|++....+ |....+|........-.|+.++|.+.+++..+..+..-..
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 776 5677777788887888888999999999988876 5567777777777788899999999999877753221112
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q 003315 347 AYSALISGYCKFGKINKALLLHHE 370 (831)
Q Consensus 347 ~~~~li~~~~~~~~~~~A~~~~~~ 370 (831)
.....++.|+. ..++.|+.+|-+
T Consensus 410 ~~~~~~~~~~~-~~~~~~~~~~~~ 432 (458)
T PRK11906 410 VIKECVDMYVP-NPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHcC-CchhhhHHHHhh
Confidence 22223345554 346677766644
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.73 Score=39.06 Aligned_cols=99 Identities=9% Similarity=0.042 Sum_probs=72.3
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHH
Q 003315 655 HLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKE 734 (831)
Q Consensus 655 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 734 (831)
|..++..++.++++.|+.+....++++.- |+.++...- .+. --..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~------------------------~~~---------~~~~ 45 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKK------------------------EGD---------YPPS 45 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccc------------------------cCc---------cCCC
Confidence 45678889999999999998888887664 444431100 000 0012
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 003315 735 MGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDR-GLEPDTVTYTALLCGYLA 788 (831)
Q Consensus 735 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~pd~~~~~~l~~~~~~ 788 (831)
....|+.....+++.+|+..|++..|+++++...+. +++.+..+|..|+.=+..
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999999999999998854 667778889888755443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.46 E-value=2.4 Score=44.17 Aligned_cols=63 Identities=10% Similarity=0.117 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003315 622 SMYDKLIGALCQAEEMEQAQLVFNVLVDKGLT-PHLVTYTMMIHGYCKINCLREARDVFNDMKQ 684 (831)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 684 (831)
.+-..+..++.+.|+.++|.+.|.++.+.... .+......|+.++...+.+.++..++.+.-+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33344666777888888888888888764322 2344667788888888888888888887643
|
The molecular function of this protein is uncertain. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.40 E-value=2.3 Score=42.03 Aligned_cols=200 Identities=11% Similarity=-0.009 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHH----HHHcC-CCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc-CCCCC---hhh
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQ----INRRG-FVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL-GLSLN---EYT 242 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~---~~~ 242 (831)
++..+..+..+.|.+++++..--. +.+.. ....-.+|..+.+.+.+.-++.+++.+-..-... |..|. -..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 555677777888888877654322 22211 0112234445555555555566666665554432 11111 123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCC-C-----
Q 003315 243 YVIVIKALCKKGSMQEAVEVFLEMEKAGVT-----PNAFAYSTCIEGLCMNGMLDLGYELLLKWEEA--DIPL-S----- 309 (831)
Q Consensus 243 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~-~----- 309 (831)
..++..++.-.+.++++++.|+.+...... .....+..|...|.+..|+++|.-+..+..+. .... |
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 445667777788899999999887753111 12346778888888888888887766655442 1111 1
Q ss_pred -hhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCCHHH----HHHHHHHHHhcCChHHHHHHHHHH
Q 003315 310 -AFAYTVVIRWFCDQNKLEKAECVLLHMEKQGV-VPDVYA----YSALISGYCKFGKINKALLLHHEM 371 (831)
Q Consensus 310 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~----~~~li~~~~~~~~~~~A~~~~~~~ 371 (831)
......+..++...|++.+|.+..++..+..+ .-|..+ ...+.++|-..|+.|.|..-|++.
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 11223345566677777777777776554211 113333 344667777777777777666654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.37 E-value=3.2 Score=36.50 Aligned_cols=53 Identities=11% Similarity=0.172 Sum_probs=22.2
Q ss_pred HHcCChhHHHHHHHHHHHcCCCcChh-hHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003315 181 VSVGMFDEGIDILFQINRRGFVWSIC-SCNYFMNQLVECGKVDMALAVYQHLKR 233 (831)
Q Consensus 181 ~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~ 233 (831)
.+.+..++|+..|..+.+.|...-+. ............|+...|...|+++-.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 34444455555555444444332111 122223333444445555555555443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.24 E-value=1.3 Score=43.31 Aligned_cols=117 Identities=13% Similarity=0.007 Sum_probs=81.2
Q ss_pred HHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHH----HHHHHHHhcCCh
Q 003315 181 VSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYV----IVIKALCKKGSM 256 (831)
Q Consensus 181 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~ 256 (831)
-..|++.+|...++++++.- +.|..+.+..=.++.-.|+.+.-...++++.-. ..++...|. ...-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 45677777877888887764 447777777777888888888888888877643 123443332 222234467888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003315 257 QEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLK 300 (831)
Q Consensus 257 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (831)
++|++.-++..+.+ +.|..+-..+...+...|+..++.++..+
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 88888888887765 55666777777888888888888777655
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.22 E-value=1.2 Score=47.42 Aligned_cols=106 Identities=19% Similarity=0.118 Sum_probs=49.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 003315 242 TYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFC 321 (831)
Q Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (831)
..+.++..+.+.|..+.|+++-..-. .-.....+.|+++.|.++.++ ..++..|..|.+...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHH
Confidence 34555555555555555555432211 112233345555555444321 224445555666666
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 322 DQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSK 374 (831)
Q Consensus 322 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 374 (831)
++|+++-|++.|.+... +..|+-.|.-.|+.++-.++.+.....
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 66666666655555432 344445555555555555555444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.18 E-value=12 Score=43.69 Aligned_cols=19 Identities=32% Similarity=0.186 Sum_probs=12.1
Q ss_pred HHHHHHHHhcCCHHHHHHH
Q 003315 780 TALLCGYLAKGDLDRAIAL 798 (831)
Q Consensus 780 ~~l~~~~~~~g~~~~A~~~ 798 (831)
..|+.++...|..++|.++
T Consensus 1188 ~~Ll~~l~~~g~~eqa~~L 1206 (1265)
T KOG1920|consen 1188 KRLLEVLVTFGMDEQARAL 1206 (1265)
T ss_pred HHHHHHHHHcCCcHHHHHH
Confidence 3566666667766666655
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.16 Score=33.66 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=15.5
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 003315 312 AYTVVIRWFCDQNKLEKAECVLLHMEKQG 340 (831)
Q Consensus 312 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 340 (831)
++..+.+.|.+.|++++|+++|+++.+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34445555555555555555555555543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.03 E-value=3.6 Score=37.18 Aligned_cols=95 Identities=18% Similarity=0.063 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCcC--hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003315 174 DAMIKAYVSVGMFDEGIDILFQINRRGFVWS--ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC 251 (831)
Q Consensus 174 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (831)
..+++.++..|++++|...+++.+....+.+ ..+-..+.++....|.+|+|+..++.....+. .......-.+.+.
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 4566777788888888888887765421211 11223355666777788888887777655321 2223344456677
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 003315 252 KKGSMQEAVEVFLEMEKAG 270 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~ 270 (831)
..|+-++|...|++.++.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7788888888887777654
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=8.6 Score=39.71 Aligned_cols=125 Identities=12% Similarity=0.012 Sum_probs=74.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003315 285 LCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKA 364 (831)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A 364 (831)
-...|+.-.|-+-+...+.+. +.++.........+...|+++.+.+.+...... +.....+...++....+.|+++.|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 334566655554444444432 334444444555666778888887777666543 223445666677777778888888
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003315 365 LLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFF 412 (831)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 412 (831)
..+-.-|+...+. +...........-..|-++++.-.|+++...+.+
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 8888877776655 3333333333334556677777777777655443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.90 E-value=14 Score=41.77 Aligned_cols=164 Identities=15% Similarity=0.066 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHH----HHHcCChhHHHHHHHHHHhcCCCCChhhHHH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQ----LVECGKVDMALAVYQHLKRLGLSLNEYTYVI 245 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 245 (831)
..........+...|.+++|++.. ...+ |+.....++.- +...++....+...+.+...-+.-++.....
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hA---laA~---d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll 420 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHA---LAAG---DPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLL 420 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHH---HhCC---CHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHH
Confidence 567778888888899999888763 3333 22322333322 2233444333333333221000011111222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-------HHHHHH-HHHHhcCChhHHHHHHHHHHHCC----CCCChhhH
Q 003315 246 VIKALCKKGSMQEAVEVFLEMEKAGVTPNAF-------AYSTCI-EGLCMNGMLDLGYELLLKWEEAD----IPLSAFAY 313 (831)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~ 313 (831)
-+....-..++.+|..++.++...-..|+.. .++.+- ......|+++++.++.+.....= .......+
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 2233445788899988888876542122211 233332 23445678888888877776641 12234456
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 314 TVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 314 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
..+..+..-.|++++|..+..+..+.
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 66677777788888888777665543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.89 E-value=3.7 Score=36.18 Aligned_cols=123 Identities=19% Similarity=0.145 Sum_probs=55.5
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHH--HHHHHhcCCh
Q 003315 216 VECGKVDMALAVYQHLKRLGLSLNEY-TYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAF-AYSTC--IEGLCMNGML 291 (831)
Q Consensus 216 ~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l--~~~~~~~~~~ 291 (831)
...+..++|+.-|..+.+.|...=+. ............|+...|+..|++.-...-.|-.. -...| .-.+...|-+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 44556667777777766654321111 12222333455677777777777665432222221 00111 1123344445
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 003315 292 DLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEK 338 (831)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 338 (831)
+......+-+...+-+.-......|.-+-.+.|++.+|.+.|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 44444444443333333333334444444444555555555444443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.88 E-value=3.3 Score=34.57 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003315 590 NKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLT 653 (831)
Q Consensus 590 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 653 (831)
+..+..+...|+.+.-.+++..+.+. -.+++...-.+..+|.+.|+..++.+++.++-+.|++
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33444455556666666666665542 2566667777777777777777777777777766543
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.78 E-value=4.1 Score=35.56 Aligned_cols=42 Identities=12% Similarity=0.040 Sum_probs=19.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 003315 280 TCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCD 322 (831)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (831)
.++..+...+.......+++.+...+ +.++..++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444444455555555444443 2344444444444443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.74 E-value=1.8 Score=42.31 Aligned_cols=158 Identities=13% Similarity=0.005 Sum_probs=88.4
Q ss_pred HHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-CCC
Q 003315 124 VRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR-GFV 202 (831)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~ 202 (831)
+-++-..|++.+|.....++++..|. +.-++...=.+|.-.|+.+.-...++++.-. +..
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~Pt-------------------Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~d 170 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPT-------------------DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNAD 170 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCch-------------------hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCC
Confidence 33556677777777777777776443 2223334445566677777777777776654 221
Q ss_pred cChhhH--HHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHH
Q 003315 203 WSICSC--NYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPN---AFA 277 (831)
Q Consensus 203 ~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~ 277 (831)
..-.+| ....-.+..+|-+++|++.-++..+.+ +.|...-.++...+--.|++.++.+...+-...=-..+ ..-
T Consensus 171 lp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHN 249 (491)
T KOG2610|consen 171 LPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHN 249 (491)
T ss_pred CcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhh
Confidence 111122 223334456777888877777776654 34555566666667677777777776655433100001 011
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 003315 278 YSTCIEGLCMNGMLDLGYELLLKW 301 (831)
Q Consensus 278 ~~~l~~~~~~~~~~~~a~~~~~~~ 301 (831)
|=...-.+...+.++.|+++|..-
T Consensus 250 yWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 250 YWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred hHHHHHhhhcccchhHHHHHHHHH
Confidence 112223344557778888777553
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.73 E-value=6.8 Score=37.63 Aligned_cols=132 Identities=20% Similarity=0.036 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH-
Q 003315 241 YTYVIVIKALCKKGSMQEAVEVFLEMEKA-GVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIR- 318 (831)
Q Consensus 241 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 318 (831)
..+......+...+.+..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444444455555555555555544431 112233334444444444444555555555544432111 111111222
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 319 WFCDQNKLEKAECVLLHMEKQGV--VPDVYAYSALISGYCKFGKINKALLLHHEMTS 373 (831)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 373 (831)
.+...|+++.|...+++...... ......+......+...++.+.+...+.....
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 44555555555555555533211 01222222223334444555555555555544
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.71 E-value=4.4 Score=35.36 Aligned_cols=84 Identities=14% Similarity=0.089 Sum_probs=48.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG 254 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (831)
.++..+...+.+...+..++.+.+.+. .+....+.++..|++.++ ++....++. . .+......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 455556666677777777777766653 456666777777765532 222333321 1 23333444566666666
Q ss_pred ChHHHHHHHHHH
Q 003315 255 SMQEAVEVFLEM 266 (831)
Q Consensus 255 ~~~~A~~~~~~m 266 (831)
.++++..++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 666666666554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.55 E-value=12 Score=40.09 Aligned_cols=134 Identities=10% Similarity=0.050 Sum_probs=91.2
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 003315 238 LNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAF-AYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVV 316 (831)
Q Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 316 (831)
.+-..|+.++.---...+.+.+..++..++.. -|... .|......=.+.|..+.+.++|++.+.. +|.+...|..+
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y 119 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSY 119 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHH
Confidence 34556666664444444456667777777754 46554 4455555566788889999999988875 57777788777
Q ss_pred HHHHHh-cCCHhHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 317 IRWFCD-QNKLEKAECVLLHMEKQ-GVV-PDVYAYSALISGYCKFGKINKALLLHHEMTSK 374 (831)
Q Consensus 317 ~~~~~~-~g~~~~A~~~~~~~~~~-~~~-p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 374 (831)
...+.. .|+.+...+.|+..... |.. -....|...|..-..++++.....++++.++.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 766654 47777788888887764 211 13456777777777788888888888888775
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.19 Score=30.89 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003315 777 VTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGD 810 (831)
Q Consensus 777 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd 810 (831)
.+|..++.+|...|++++|++.+++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3566677777777777777777777766 5554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.22 E-value=14 Score=39.72 Aligned_cols=130 Identities=11% Similarity=0.044 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChh-hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSIC-SCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKAL 250 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (831)
.+..++.---.....+.+..+|..++.. -|... -|......=.+.|..+.+.++|++-+. +++.+...|...+..+
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFL 123 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHH
Confidence 3444444333334445666666666644 23332 344455555677888888888888775 3566666776666555
Q ss_pred H-hcCChHHHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003315 251 C-KKGSMQEAVEVFLEMEKA-GVT-PNAFAYSTCIEGLCMNGMLDLGYELLLKWEEA 304 (831)
Q Consensus 251 ~-~~g~~~~A~~~~~~m~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (831)
. ..|+.+.....|+.++.. |.. -....|-..|..-..++++.....+++++++.
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 4 357777778888887763 322 23345666666667777888888888887764
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.10 E-value=1.7 Score=46.10 Aligned_cols=98 Identities=21% Similarity=0.305 Sum_probs=53.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHH
Q 003315 425 LCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKA 504 (831)
Q Consensus 425 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 504 (831)
..+.|+++.|.++.++.. +...|..|......+|+++-|.+.|.+..+ +..++-.|.-.|+.+..
T Consensus 328 Al~lg~L~~A~~~a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKELD------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHCT-HHHHHHHCCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HHhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 345666666665543322 555677777777777777777777665432 34455556666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003315 505 FDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFL 543 (831)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 543 (831)
.++.+.....| . ++....++.-.|+.++..+++
T Consensus 393 ~kl~~~a~~~~-~-----~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 393 SKLAKIAEERG-D-----INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHHcc-C-----HHHHHHHHHHcCCHHHHHHHH
Confidence 66666665554 1 233333444456666555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=92.83 E-value=20 Score=40.52 Aligned_cols=191 Identities=14% Similarity=0.104 Sum_probs=114.1
Q ss_pred hHHHHHHHHHH-hCCCCC--CHHHHHHHHHHHH-cCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHH
Q 003315 99 KIALSFFEQLK-RSGFSH--NLCTYAAIVRILC-CCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSD 174 (831)
Q Consensus 99 ~~A~~~~~~~~-~~~~~~--~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (831)
..|+.+++.+. +..++| +..++.+++.+|. ...+.++|...+.+.+.......+. + .--.+-.
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~--d-----------~k~~~~~ 104 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLT--D-----------LKFRCQF 104 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH--H-----------HHHHHHH
Confidence 45778887776 443343 3556778888887 5778899999988876653321111 0 0122344
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcC----CCcChhhHHHH-HHHHHHcCChhHHHHHHHHHHhcC---CCCChhhHHHH
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRG----FVWSICSCNYF-MNQLVECGKVDMALAVYQHLKRLG---LSLNEYTYVIV 246 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l 246 (831)
.+++.+.+.+... |....++.++.- ..+....+..+ +..+...+++..|.+.++.+.... ..|....+-.+
T Consensus 105 ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l 183 (608)
T PF10345_consen 105 LLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL 183 (608)
T ss_pred HHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 6678777777776 888888866532 12333344444 333334478999999998877532 12333444444
Q ss_pred HHHHH--hcCChHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHH
Q 003315 247 IKALC--KKGSMQEAVEVFLEMEKAG---------VTPNAFAYSTCIEGLC--MNGMLDLGYELLLKWEE 303 (831)
Q Consensus 247 ~~~~~--~~g~~~~A~~~~~~m~~~~---------~~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 303 (831)
+.+.. +.+..+++++.++++.... ..|...++..+++.++ ..|+++.+...++++.+
T Consensus 184 ~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 184 SEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44443 4566777777777764321 1234556777766644 56776677666655543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.24 Score=30.33 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003315 777 VTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGD 810 (831)
Q Consensus 777 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd 810 (831)
..|..++.+|...|++++|++.+++..+ +.|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 3456666677777777777777777666 4554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.59 E-value=12 Score=37.54 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH
Q 003315 759 DGITVFNEISDRGLEPDTVTYTALL 783 (831)
Q Consensus 759 ~A~~~~~~~~~~g~~pd~~~~~~l~ 783 (831)
++.++++.+.+.|+++....|..++
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHcCCccccccccHHH
Confidence 4555555555555555554444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.53 E-value=6.8 Score=34.47 Aligned_cols=87 Identities=10% Similarity=-0.153 Sum_probs=45.1
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH
Q 003315 180 YVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEA 259 (831)
Q Consensus 180 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (831)
-.+.++.+++..++..+.-..|. ....-..-...++..|++.+|+.+|+++.... |....-..|+..|....+-..=
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChHH
Confidence 34566777777777766665433 33333334455667777777777777765532 3333333444444333332233
Q ss_pred HHHHHHHHhC
Q 003315 260 VEVFLEMEKA 269 (831)
Q Consensus 260 ~~~~~~m~~~ 269 (831)
...-+++.+.
T Consensus 97 r~~A~evle~ 106 (160)
T PF09613_consen 97 RRYADEVLES 106 (160)
T ss_pred HHHHHHHHhc
Confidence 3333444444
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.38 E-value=11 Score=36.19 Aligned_cols=120 Identities=23% Similarity=0.071 Sum_probs=78.3
Q ss_pred cCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHhHHH
Q 003315 253 KGSMQEAVEVFLEMEKAGVT-PNAFAYSTCIEGLCMNGMLDLGYELLLKWEEA-DIPLSAFAYTVVIRWFCDQNKLEKAE 330 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 330 (831)
.+....+...+......... .....+......+...+++..+...+...... ..+.....+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45556666666666554211 12466677777788888888888888777652 23455666777777777788888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHh
Q 003315 331 CVLLHMEKQGVVPDVYAYSALIS-GYCKFGKINKALLLHHEMTS 373 (831)
Q Consensus 331 ~~~~~~~~~~~~p~~~~~~~li~-~~~~~~~~~~A~~~~~~~~~ 373 (831)
+.+.........+ ......... .+...|+++.|...+.+...
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 158 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE 158 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888887754332 122222223 67778888888888887754
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.23 E-value=2.5 Score=38.10 Aligned_cols=97 Identities=12% Similarity=0.002 Sum_probs=72.3
Q ss_pred HHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCc
Q 003315 124 VRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVW 203 (831)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 203 (831)
..-+...|.+.+|.+-|..++...|+.+... ..-.|..-+.++.+.+.++.|+.--.++++.++.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~--------------rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt- 166 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEE--------------RSILYSNRAAALIKLRKWESAIEDCSKAIELNPT- 166 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHH--------------HHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-
Confidence 3346678888999999998888877655443 2335667777888889999999988888888754
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 003315 204 SICSCNYFMNQLVECGKVDMALAVYQHLKRLG 235 (831)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 235 (831)
...+...-..+|.+...++.|+.-|..+.+..
T Consensus 167 y~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 167 YEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 44455555667788888888888888888753
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.31 Score=30.47 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=18.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH
Q 003315 173 SDAMIKAYVSVGMFDEGIDILFQIN 197 (831)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~ 197 (831)
+..|+.+|.+.|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5577778888888888888887754
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.01 E-value=14 Score=36.89 Aligned_cols=49 Identities=18% Similarity=0.159 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHhCC
Q 003315 327 EKAECVLLHMEKQGVVPDVYAYSALISGYCK--FG----KINKALLLHHEMTSKG 375 (831)
Q Consensus 327 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~--~~----~~~~A~~~~~~~~~~~ 375 (831)
++...+++.|.+.|...+..+|.+....... .. ...+|.++|+.|++..
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 4455667777777777666555543222222 22 2446777777777654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.94 E-value=8.8 Score=34.27 Aligned_cols=134 Identities=10% Similarity=0.077 Sum_probs=83.1
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccC
Q 003315 642 LVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKED 721 (831)
Q Consensus 642 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 721 (831)
++...+.+.++.|+...+..+++.+.+.|++... ..++..++-||.......+-.+... ...-
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~-------------~~~~ 77 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQ-------------YPPA 77 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHcc-------------ChHH
Confidence 4555566778888888999999999988886554 4444556777777766665444331 1122
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003315 722 VVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDE 801 (831)
Q Consensus 722 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~ 801 (831)
..-|.+++.++.. .+..++..+...|++-+|+++....... +......++.+-.+.+|...-..+++-
T Consensus 78 ~Ql~lDMLkRL~~--------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~f 145 (167)
T PF07035_consen 78 YQLGLDMLKRLGT--------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRF 145 (167)
T ss_pred HHHHHHHHHHhhh--------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3445555555542 3566777888999999999998875321 111223456666666665544444444
Q ss_pred HHh
Q 003315 802 MSV 804 (831)
Q Consensus 802 ~~~ 804 (831)
...
T Consensus 146 f~~ 148 (167)
T PF07035_consen 146 FEE 148 (167)
T ss_pred HHH
Confidence 443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.42 Score=29.31 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRGF 201 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 201 (831)
.+|..++.+|...|++++|+..|+++++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4677888888888888888888888887653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.81 E-value=1.3 Score=42.10 Aligned_cols=86 Identities=16% Similarity=0.129 Sum_probs=46.3
Q ss_pred ChhhHHHHHHHHHH-----cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC----------------hHHHHHH
Q 003315 204 SICSCNYFMNQLVE-----CGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGS----------------MQEAVEV 262 (831)
Q Consensus 204 ~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------------~~~A~~~ 262 (831)
|-.+|...+..+.. .+.++-....++.|.+.|+..|..+|+.|++.+-+..- -+-++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 44455555544433 23455555566667777777777777777766543221 1234455
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003315 263 FLEMEKAGVTPNAFAYSTCIEGLCMNG 289 (831)
Q Consensus 263 ~~~m~~~~~~p~~~~~~~l~~~~~~~~ 289 (831)
+++|...|+.||..+-..|++++.+.+
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 555555555555555555555544443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.59 E-value=16 Score=36.42 Aligned_cols=204 Identities=11% Similarity=0.017 Sum_probs=125.2
Q ss_pred CcccHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHCCCCCC
Q 003315 585 KKSSCNKLITNLLILRDN----NNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEM-----EQAQLVFNVLVDKGLTPH 655 (831)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~~~~~~p~ 655 (831)
|+..-...++++...|+. +++...+..+... .++..+-...+.++...+.. ..+...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 444455555566666553 3456666555332 46666665666666554421 223333333333 346
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHc
Q 003315 656 LVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEM 735 (831)
Q Consensus 656 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 735 (831)
..+-...+.++.+.|+ ++|+..+-.+++ .+|...-...+.+++..+. +...+...+..+..
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~--------------~~~~~~~~L~~~L~- 202 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKY--------------DNPDIREAFVAMLQ- 202 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCC--------------CCHHHHHHHHHHhc-
Confidence 6666677777777776 567777777775 3454455555555554211 12345555555552
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003315 736 GIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKS 815 (831)
Q Consensus 736 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~ 815 (831)
.+|...-...+.++.+.|. .+|+..+-+..+.+ + .....+.++...|+ ++|+..+..+.. -.||..+..
T Consensus 203 --D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~-~~a~p~L~~l~~--~~~d~~v~~ 271 (280)
T PRK09687 203 --DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGD-KTLLPVLDTLLY--KFDDNEIIT 271 (280)
T ss_pred --CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCC-HhHHHHHHHHHh--hCCChhHHH
Confidence 4566777778888988888 67887777777542 3 34567888999999 579999999987 466888777
Q ss_pred HHHHHHHh
Q 003315 816 SLERGIEK 823 (831)
Q Consensus 816 ~l~~~~~~ 823 (831)
..+.++.+
T Consensus 272 ~a~~a~~~ 279 (280)
T PRK09687 272 KAIDKLKR 279 (280)
T ss_pred HHHHHHhc
Confidence 77776654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.25 Score=30.45 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGI 190 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~ 190 (831)
++.+|..++..|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 7789999999999999999986
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.47 E-value=2.2 Score=41.61 Aligned_cols=77 Identities=19% Similarity=0.193 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 003315 743 SYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSV-----KGIQGDDYTKSSL 817 (831)
Q Consensus 743 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~pd~~~~~~l 817 (831)
++..++..+...|+++.+.+.++++.+. -+-|...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 6677888899999999999999999986 344788999999999999999999999998875 4899998877766
Q ss_pred HHH
Q 003315 818 ERG 820 (831)
Q Consensus 818 ~~~ 820 (831)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 555
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.38 E-value=2.6 Score=40.23 Aligned_cols=31 Identities=26% Similarity=0.384 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 003315 674 EARDVFNDMKQRGITPDVVTYTVLFDAHSKI 704 (831)
Q Consensus 674 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 704 (831)
=++.++++|...|+-||..+-.+++.++++-
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~ 171 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRW 171 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhccc
Confidence 3678899999999999999988898888763
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.10 E-value=29 Score=38.66 Aligned_cols=172 Identities=12% Similarity=0.105 Sum_probs=92.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCc-ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVW-SICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKK 253 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (831)
.=++.+.+.+++++|+.+-......-... -.......+.-|...|++++|-...-.|.. .+..-|..-+..+...
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 34567788899999998866544332110 123456677777888899999888888774 4666777777777766
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 003315 254 GSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVL 333 (831)
Q Consensus 254 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 333 (831)
++......+ +.......+...|..++..+.. .+. .-|.+.++. +|.+...-...+.+ ...
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~----~~F~e~i~~-Wp~~Lys~l~iisa---------~~~-- 496 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDV----KGFLELIKE-WPGHLYSVLTIISA---------TEP-- 496 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHH----HHHHHHHHh-CChhhhhhhHHHhh---------cch--
Confidence 665443332 2221112345567777766655 222 222222222 22222111111111 111
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 334 LHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTS 373 (831)
Q Consensus 334 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 373 (831)
+..+. -. +...-..|+..|...+++++|+.++-...+
T Consensus 497 -q~~q~-Se-~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 497 -QIKQN-SE-STALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred -HHHhh-cc-chhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 11111 11 223334477788888888888877766543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.51 Score=29.49 Aligned_cols=27 Identities=22% Similarity=0.301 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 778 TYTALLCGYLAKGDLDRAIALVDEMSV 804 (831)
Q Consensus 778 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 804 (831)
+|..|...|.+.|++++|++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356777788888888888888877543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.00 E-value=2.3 Score=41.42 Aligned_cols=79 Identities=20% Similarity=0.370 Sum_probs=50.9
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHHHH
Q 003315 205 ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEK-----AGVTPNAFAYS 279 (831)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 279 (831)
..++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3455666666777777777777777777654 45666777777777777777777777776654 35566655544
Q ss_pred HHHHH
Q 003315 280 TCIEG 284 (831)
Q Consensus 280 ~l~~~ 284 (831)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44333
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.91 E-value=0.6 Score=28.51 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRG 200 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 200 (831)
.++..++..+...|++++|++.|+++++..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 456788888888888888888888887764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.91 E-value=11 Score=33.28 Aligned_cols=51 Identities=16% Similarity=-0.053 Sum_probs=22.6
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 288 NGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
.++.+++..++..+.-.. |-.+..-..-...++..|++.+|..+|+++.+.
T Consensus 23 ~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred cCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 344444444444444332 222222233334444555555555555555443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.88 E-value=39 Score=39.73 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHH
Q 003315 429 GEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFK 474 (831)
Q Consensus 429 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 474 (831)
++++.|+..+.++.. ..|.-.+..--+.|-+.+|+.++.
T Consensus 894 ~ry~~AL~hLs~~~~-------~~~~e~~n~I~kh~Ly~~aL~ly~ 932 (1265)
T KOG1920|consen 894 KRYEDALSHLSECGE-------TYFPECKNYIKKHGLYDEALALYK 932 (1265)
T ss_pred HHHHHHHHHHHHcCc-------cccHHHHHHHHhcccchhhhheec
Confidence 456666666555442 133333444445666666666653
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.83 E-value=31 Score=38.44 Aligned_cols=179 Identities=12% Similarity=0.066 Sum_probs=110.7
Q ss_pred hhHHHHHHHHHHHcCCCcChhhHHHHHHHHH-----HcCChhHHHHHHHHHHh-------cCCCCChhhHHHHHHHHHhc
Q 003315 186 FDEGIDILFQINRRGFVWSICSCNYFMNQLV-----ECGKVDMALAVYQHLKR-------LGLSLNEYTYVIVIKALCKK 253 (831)
Q Consensus 186 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 253 (831)
...|...++.+.+.| +......++.++. ...+.+.|...|+...+ .+ .+.....+...|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 567888888888776 3444444444433 44678899999988866 44 344666777777764
Q ss_pred C-----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHH----hc
Q 003315 254 G-----SMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCM-NGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFC----DQ 323 (831)
Q Consensus 254 g-----~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 323 (831)
. +.+.|+.++.+..+.| .|+.......+.-... ..+...|.++|......|. ...+..+..+|. -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcC
Confidence 3 5677999998888877 4555444333322222 2467789999999888873 333333444333 23
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003315 324 NKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGI 376 (831)
Q Consensus 324 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 376 (831)
.+.+.|..++.+..+.| .|....-...+..+.. ++++.+.-.+..+.+.|.
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 46788888888888876 2222222222333333 777777766666666554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.81 E-value=2.8 Score=38.28 Aligned_cols=82 Identities=12% Similarity=0.208 Sum_probs=61.2
Q ss_pred HcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003315 734 EMGIRPDV-ISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPD--TVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGD 810 (831)
Q Consensus 734 ~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd 810 (831)
+..++-+. ..+..++.-|++.|+.++|++.+.++.+....+. ...+-.+++...-.|++..+...+.+....--.++
T Consensus 28 ~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~ 107 (177)
T PF10602_consen 28 SNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG 107 (177)
T ss_pred hccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence 33344444 4788999999999999999999999998755554 34577889999999999999999888765433334
Q ss_pred HHHHH
Q 003315 811 DYTKS 815 (831)
Q Consensus 811 ~~~~~ 815 (831)
+....
T Consensus 108 d~~~~ 112 (177)
T PF10602_consen 108 DWERR 112 (177)
T ss_pred hHHHH
Confidence 34333
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.57 E-value=0.31 Score=30.00 Aligned_cols=32 Identities=13% Similarity=0.034 Sum_probs=17.1
Q ss_pred HHHHHHcCCCcChhhHHHHHHHHHHcCChhHHH
Q 003315 193 LFQINRRGFVWSICSCNYFMNQLVECGKVDMAL 225 (831)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 225 (831)
|+++++.+|. +..+++.+..+|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 3444454433 5555555666666666555553
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.40 E-value=3.4 Score=37.68 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003315 242 TYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNA--FAYSTCIEGLCMNGMLDLGYELLLKWEE 303 (831)
Q Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (831)
.+..+...|++.|+.+.|++.|.++.+....+.. ..+..+|+.....+++..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4556666677777777777777776664333322 2445555666666666666655555443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.94 E-value=13 Score=38.64 Aligned_cols=65 Identities=11% Similarity=0.081 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 740 DVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEP---DTVTYTALLCGYLAKGDLDRAIALVDEMSV 804 (831)
Q Consensus 740 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 804 (831)
...+|..++..+.+.|+++.|...+.++...+..+ ++.+...-...+...|+.++|+..+++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34588889999999999999999999998643211 344455556778899999999999988887
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.13 E-value=6.9 Score=31.08 Aligned_cols=64 Identities=13% Similarity=0.111 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003315 759 DGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLERGIEK 823 (831)
Q Consensus 759 ~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~ 823 (831)
+..+-++.+....+.|++.+..+.+++|.+.+|+..|+++++.+..+ ..+....|..++..+.-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqElkP 91 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQELKP 91 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHHhh
Confidence 56666777777778899999999999999999999999999888765 23333367777665543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=88.94 E-value=3.5 Score=36.79 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003315 757 LEDGITVFNEISDRGLEPD-TVTYTALLCGYLAKGD-----------LDRAIALVDEMSVKGIQGDDYTKSSLERGIEK 823 (831)
Q Consensus 757 ~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~ 823 (831)
+++|+.-|++++. +.|+ ..++..|+.+|...+. +++|.+.|++... .+|++..|+.-+....|
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHh
Confidence 4566666666665 6787 4677788887776542 5667777777777 79999999876655443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.83 E-value=15 Score=31.84 Aligned_cols=53 Identities=11% Similarity=-0.107 Sum_probs=36.4
Q ss_pred HHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 181 VSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 181 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
...++++++..+++.+.-..|. ....-..-...++..|++++|.++|+++.+.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3477888888888877766543 3333334455677888888888888887764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.67 E-value=17 Score=32.45 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=13.3
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003315 335 HMEKQGVVPDVYAYSALISGYCKFGKIN 362 (831)
Q Consensus 335 ~~~~~~~~p~~~~~~~li~~~~~~~~~~ 362 (831)
.+.+.++.|+...+..+++.+.+.|++.
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3334444445555555555555555433
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=88.60 E-value=2.1 Score=29.55 Aligned_cols=42 Identities=26% Similarity=0.300 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003315 780 TALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLERGIEK 823 (831)
Q Consensus 780 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~ 823 (831)
..+.-++.+.|++++|.++.+.+++ ++|+..-...|...+.+
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~i~~ 46 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKELIED 46 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHH
Confidence 3456678888888888888888888 78888877777665543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.17 E-value=0.84 Score=27.89 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 778 TYTALLCGYLAKGDLDRAIALVDEMSV 804 (831)
Q Consensus 778 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 804 (831)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666667777777777777776665
|
... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.14 E-value=4.6 Score=36.50 Aligned_cols=93 Identities=14% Similarity=0.000 Sum_probs=50.0
Q ss_pred HHccCChhhHHHHHHHHHHcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 003315 460 YCLQGKLGDALDLFKEMKEMGHKPD----IITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGR 535 (831)
Q Consensus 460 ~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 535 (831)
+...|++++|..-|...++..+... ...|..-..++.+.+.++.|++-..+.++.+ +........-..+|.+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence 4566667777666666665432211 1223333445556666666666666666654 2222333333445666666
Q ss_pred HHHHHHHHHHhhhCCCCC
Q 003315 536 VEEAEAFLDGLKGKCLEN 553 (831)
Q Consensus 536 ~~~a~~~~~~~~~~~~~~ 553 (831)
+++|..-++++.+.+|..
T Consensus 184 ~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 184 YEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHHHHHHHHHhCcch
Confidence 666666666666655543
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.14 E-value=25 Score=33.59 Aligned_cols=191 Identities=14% Similarity=0.081 Sum_probs=114.7
Q ss_pred CChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc---C--CCcCh
Q 003315 131 GWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR---G--FVWSI 205 (831)
Q Consensus 131 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~--~~~~~ 205 (831)
...++|++.|.++++..++.. .+--.+.-..++.+.+.+++++.+..|.+++.. . -.-+.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKg---------------eWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE 105 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKG---------------EWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE 105 (440)
T ss_pred cCHHHHHHHHHHHHhcccccc---------------hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH
Confidence 356677777777777654321 112234557888999999999999999987532 1 12345
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhc-CCCCChh----hHHHHHHHHHhcCChHHHHHHHHHHHhCCC----CCC--
Q 003315 206 CSCNYFMNQLVECGKVDMALAVYQHLKRL-GLSLNEY----TYVIVIKALCKKGSMQEAVEVFLEMEKAGV----TPN-- 274 (831)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~----~p~-- 274 (831)
.+.|.++.-.+...+.+.....|+.-++. .-..|.. |-.-|...|...|.+.+..++++++...-. ..|
T Consensus 106 KsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~k 185 (440)
T KOG1464|consen 106 KSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQK 185 (440)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhh
Confidence 67888888888778887777777654421 0012222 335677778888888888888888764311 111
Q ss_pred -----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCChhhHHHHHH-----HHHhcCCHhHHHH-HHHHHH
Q 003315 275 -----AFAYSTCIEGLCMNGMLDLGYELLLKWEEAD-IPLSAFAYTVVIR-----WFCDQNKLEKAEC-VLLHME 337 (831)
Q Consensus 275 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~-----~~~~~g~~~~A~~-~~~~~~ 337 (831)
...|..-|+.|-.+.+-..-..+|++.+... --|.+... ..|+ +..+.|++++|.. .|+...
T Consensus 186 KGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 186 KGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred ccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 2356666677777777777777777765432 12333222 2222 3345667776643 334333
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.00 E-value=27 Score=33.93 Aligned_cols=72 Identities=14% Similarity=0.089 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 003315 743 SYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSV-----KGIQGDDYTKS 815 (831)
Q Consensus 743 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~pd~~~~~ 815 (831)
+++.....|..+|++.+|+++.++.++. -+.+...+..|+..+...||--.|.+.++++.+ .|+.-|+..+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 4456667889999999999999999874 344677889999999999998888888777653 37777776543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.99 E-value=21 Score=32.55 Aligned_cols=91 Identities=14% Similarity=-0.040 Sum_probs=49.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003315 283 EGLCMNGMLDLGYELLLKWEEADI--PLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGK 360 (831)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 360 (831)
..+...|++++|...++....... .....+-..|.+.....|.+++|+..++.....+.. ......-.+++...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCc
Confidence 445566666666666665554310 111223344556666667777777776665543221 1122333456666677
Q ss_pred hHHHHHHHHHHHhCC
Q 003315 361 INKALLLHHEMTSKG 375 (831)
Q Consensus 361 ~~~A~~~~~~~~~~~ 375 (831)
-++|..-|++.+..+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 777777776666654
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.80 E-value=4.4 Score=31.75 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=24.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 760 GITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMS 803 (831)
Q Consensus 760 A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 803 (831)
+.+-++.+....+.|++.+..+-+++|.+.+|+..|.++++...
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444444555666666666666666666666666665554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.79 E-value=50 Score=36.75 Aligned_cols=101 Identities=18% Similarity=0.194 Sum_probs=60.2
Q ss_pred hcCCCCChhhHH-----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CC
Q 003315 233 RLGLSLNEYTYV-----IVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEA-DI 306 (831)
Q Consensus 233 ~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~ 306 (831)
..|++.+..-|. .++.-+...+.+..|+++-+-+...-.. +...|.....-+.+..+. .-.++++.+.++ +.
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~-~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDK-MDEEVLDKIDEKLSA 502 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCc-cchHHHHHHHHHhcc
Confidence 446665555443 4566777888999999988776532111 145666666666665322 112223333222 11
Q ss_pred -CCChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 003315 307 -PLSAFAYTVVIRWFCDQNKLEKAECVLLH 335 (831)
Q Consensus 307 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 335 (831)
-.....|..+++.....|+.+-|..+++.
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 13445677788888888998888887765
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.34 E-value=53 Score=36.51 Aligned_cols=124 Identities=14% Similarity=0.141 Sum_probs=73.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC-CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 003315 559 NGYCKTGHTKEAFQLFMRLSNQG-VLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEM 637 (831)
Q Consensus 559 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 637 (831)
-++.--|+-++|-.++++|.... +.........++-+|+-.|+.....+++.-++.. +..|..-+..+.-++.-..++
T Consensus 509 iaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 509 IALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 34445677777777777776542 2223344556666777777777766666655542 234444444444455566677
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 003315 638 EQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKIN-CLREARDVFNDMKQ 684 (831)
Q Consensus 638 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 684 (831)
+.-..+.+-+.+. ..|.+..-.++.-+.+-.| -..+|+.+++-|..
T Consensus 588 ~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGLKEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhc
Confidence 7777777666554 4555554444444433333 35788899988875
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=87.32 E-value=14 Score=31.33 Aligned_cols=83 Identities=16% Similarity=0.246 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003315 738 RPDVISYTVLIAKLCNTQN---LEDGITVFNEISDRGLEPD--TVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDY 812 (831)
Q Consensus 738 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~pd--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~ 812 (831)
.++..+--.+.|++.+..+ ..+.+.+++.+.+. -.|+ .....-|.-++.+.+++++++++++.+++ .+||+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCcH
Confidence 5666777778899988775 45678888888863 2333 33444566689999999999999999998 788887
Q ss_pred HHHHHHHHHHh
Q 003315 813 TKSSLERGIEK 823 (831)
Q Consensus 813 ~~~~l~~~~~~ 823 (831)
-...|-+.+.+
T Consensus 106 Qa~~Lk~~ied 116 (149)
T KOG3364|consen 106 QALELKETIED 116 (149)
T ss_pred HHHHHHHHHHH
Confidence 76666655544
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=87.29 E-value=60 Score=37.08 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=20.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC
Q 003315 661 MMIHGYCKINCLREARDVFNDMKQR 685 (831)
Q Consensus 661 ~l~~~~~~~g~~~~A~~~~~~m~~~ 685 (831)
.|+..+...|++++|...++++...
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 6778888889999999888887754
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=86.93 E-value=12 Score=33.49 Aligned_cols=33 Identities=9% Similarity=-0.045 Sum_probs=19.8
Q ss_pred ChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc
Q 003315 185 MFDEGIDILFQINRRGFVWSICSCNYFMNQLVEC 218 (831)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (831)
.+++|+.-|++++..+|. ...++..+.++|...
T Consensus 50 miedAisK~eeAL~I~P~-~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPN-KHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHH
Confidence 456666667777776644 456666677766543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.11 E-value=8.8 Score=37.46 Aligned_cols=99 Identities=14% Similarity=0.155 Sum_probs=58.4
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHH
Q 003315 655 HLVTYTMMIHGYCKINCLREARDVFNDMKQR---GITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNE 731 (831)
Q Consensus 655 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 731 (831)
...+...++..-....+++++...+-++... -..|+.. ....+..|.+ -++++++.++..
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlllk----------------y~pq~~i~~l~n 125 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLLK----------------YDPQKAIYTLVN 125 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHHc----------------cChHHHHHHHhC
Confidence 3444444444444456667777666665532 1112211 1222333322 245677777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003315 732 MKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDR 770 (831)
Q Consensus 732 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 770 (831)
=++.|+-||..+.+.+++.+.+.+++.+|..+...|+..
T Consensus 126 pIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 126 PIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 777788888888888888888888888877777776643
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.01 E-value=4.2 Score=39.94 Aligned_cols=96 Identities=15% Similarity=-0.009 Sum_probs=65.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG 254 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (831)
.-+.-|.++|+|++|++.|.+.+...+- |...+..-..+|.+..++..|+.-.+..+..+ ..-+..|..-+.+--..|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 4456688899999999999987776532 77777777888889888888887777766532 111234544444444556
Q ss_pred ChHHHHHHHHHHHhCCCCCC
Q 003315 255 SMQEAVEVFLEMEKAGVTPN 274 (831)
Q Consensus 255 ~~~~A~~~~~~m~~~~~~p~ 274 (831)
...+|.+-++..++. .|+
T Consensus 180 ~~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLAL--EPK 197 (536)
T ss_pred hHHHHHHhHHHHHhh--Ccc
Confidence 666666666666654 455
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=85.59 E-value=50 Score=34.51 Aligned_cols=97 Identities=6% Similarity=0.022 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC 251 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (831)
............|.|+.+...+..+.+.- .....+...+++...+.|+++.|..+-+-|+...+. ++..........-
T Consensus 325 ~i~l~~~i~~~lg~ye~~~~~~s~~~~~~-~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~ 402 (831)
T PRK15180 325 LIQLRSVIFSHLGYYEQAYQDISDVEKII-GTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSAD 402 (831)
T ss_pred hhHHHHHHHHHhhhHHHHHHHhhchhhhh-cCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHH
Confidence 33455566677888888888776654432 223445677788888888888888888877754432 3333333233334
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 003315 252 KKGSMQEAVEVFLEMEKAG 270 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~ 270 (831)
..|-++++.-.+++....+
T Consensus 403 ~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 403 ALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHhHHHHHHHHHHHHhccC
Confidence 5577788888888776654
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=85.11 E-value=73 Score=36.03 Aligned_cols=61 Identities=8% Similarity=0.005 Sum_probs=37.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-------HhHHHHHHHHHHHCCC
Q 003315 280 TCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNK-------LEKAECVLLHMEKQGV 341 (831)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~ 341 (831)
.+|--|.+.|++++|.++..+..+. .......+..++..|+...+ -++....|+...+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 4566678999999999988554443 34455667777777776532 2355566666665433
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.66 E-value=9 Score=35.15 Aligned_cols=78 Identities=13% Similarity=0.090 Sum_probs=60.8
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHH
Q 003315 97 EPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAM 176 (831)
Q Consensus 97 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 176 (831)
.-+.|++-|.++...+---+++....++..|. ..+.+.+..++.++++...+ +..+++..+..|
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~---------------~~~~n~eil~sL 184 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP---------------DDNFNPEILKSL 184 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC---------------CCCCCHHHHHHH
Confidence 44678888888875554558888888887776 56788899999988887443 235688899999
Q ss_pred HHHHHHcCChhHHH
Q 003315 177 IKAYVSVGMFDEGI 190 (831)
Q Consensus 177 ~~~~~~~~~~~~A~ 190 (831)
+..|.+.|+++.|-
T Consensus 185 as~~~~~~~~e~AY 198 (203)
T PF11207_consen 185 ASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHhcchhhhh
Confidence 99999999998874
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.03 E-value=77 Score=35.38 Aligned_cols=231 Identities=14% Similarity=0.050 Sum_probs=118.4
Q ss_pred CChHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHH
Q 003315 552 ENYSAMINGYCKTG-----HTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLIL---RDNNNALKLFKTMITLNAEPSKSM 623 (831)
Q Consensus 552 ~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~p~~~~ 623 (831)
.....++.+|.+.. +.+.|+.++.+..+.|.+ .....++..+..- .+...|.++|..+...|.. +...
T Consensus 289 ~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~---~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~ 364 (552)
T KOG1550|consen 289 PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP---DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIY 364 (552)
T ss_pred ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHH
Confidence 33455555555432 456677777776666532 2333333333322 3456777777777776632 2222
Q ss_pred HHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 003315 624 YDKLIGAL--CQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAH 701 (831)
Q Consensus 624 ~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 701 (831)
+..+.... .-.-+.+.|..++.++.+.|. |....--..+..+.. +.++.+.-.+..+.+.|.+--...-..++...
T Consensus 365 ~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~ 442 (552)
T KOG1550|consen 365 RLALCYELGLGVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQS 442 (552)
T ss_pred HHHHHHHhCCCcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhc
Confidence 21111111 123367788888888888762 221111222233333 77777777777776655432222222222221
Q ss_pred hccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---C-ChHHHHHHHHHHHHCCCCCCHH
Q 003315 702 SKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNT---Q-NLEDGITVFNEISDRGLEPDTV 777 (831)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g-~~~~A~~~~~~~~~~g~~pd~~ 777 (831)
. ... .......+...+...|......| +......+.+.|..- + +++.|...+...-+.+ ..
T Consensus 443 ~-~~~-------~~~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~ 507 (552)
T KOG1550|consen 443 E-EDL-------FSRGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQ 507 (552)
T ss_pred c-ccc-------cccccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hH
Confidence 1 000 00011335666777777666554 455555666555433 2 4788888888887654 33
Q ss_pred HHHHHHHHHH----hcCCHHHHHHHHHHHHh
Q 003315 778 TYTALLCGYL----AKGDLDRAIALVDEMSV 804 (831)
Q Consensus 778 ~~~~l~~~~~----~~g~~~~A~~~~~~~~~ 804 (831)
....|...+- -.. +..|.++++...+
T Consensus 508 ~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 508 ALFNLGYMHEHGEGIKV-LHLAKRYYDQASE 537 (552)
T ss_pred HHhhhhhHHhcCcCcch-hHHHHHHHHHHHh
Confidence 3333433322 233 6888888887766
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=83.99 E-value=57 Score=33.84 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=44.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 554 YSAMINGYCKTGHTKEAFQLFMRLSNQGVLV---KKSSCNKLITNLLILRDNNNALKLFKTMIT 614 (831)
Q Consensus 554 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 614 (831)
|..+...+.+.|+++.|...+.++...+... .+.....-+..+...|+..+|+..++....
T Consensus 149 ~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 149 WLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6667777788888888888888877654322 345555566777778888888888877776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.64 E-value=0.065 Score=47.26 Aligned_cols=53 Identities=21% Similarity=0.165 Sum_probs=29.7
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003315 317 IRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHH 369 (831)
Q Consensus 317 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 369 (831)
+..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44444555556666666666654444455666666666666665566555554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.56 E-value=80 Score=35.22 Aligned_cols=42 Identities=7% Similarity=0.060 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHH-HcCCCcChhhHHHHH
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQIN-RRGFVWSICSCNYFM 212 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~l~ 212 (831)
.+-..+-+.|...|+|++|++.--.+- ..++.++......++
T Consensus 60 ~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etiv 102 (929)
T KOG2062|consen 60 LAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIV 102 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHH
Confidence 344566778888899999888744432 233444444444444
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=83.44 E-value=48 Score=32.55 Aligned_cols=142 Identities=10% Similarity=0.119 Sum_probs=92.3
Q ss_pred CCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHH-HcCCCCCHHHHHHH
Q 003315 670 NCLREARDVFNDMKQ-RGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMK-EMGIRPDVISYTVL 747 (831)
Q Consensus 670 g~~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~l 747 (831)
....+|+.+|+..-- ..+--|..+...++.....-. +.....-.++.+-+. +.+-.++..+....
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~-------------~~~l~alYEvV~~l~~t~~~~l~~~vi~~I 208 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDE-------------NTKLNALYEVVDFLVSTFSKSLTRNVIISI 208 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhcc-------------ccchhhHHHHHHHHHhccccCCChhHHHHH
Confidence 345667777763211 124445556666666554310 011111122222222 34567888888899
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHhCCCCCCHHHHHHHHHHH
Q 003315 748 IAKLCNTQNLEDGITVFNEISDR-GLEPDTVTYTALLCGYLAKGDLDRAIALVDE-----MSVKGIQGDDYTKSSLERGI 821 (831)
Q Consensus 748 ~~~~~~~g~~~~A~~~~~~~~~~-g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~-----~~~~g~~pd~~~~~~l~~~~ 821 (831)
+..+++.++|.+-.++++..... +..-|...|..++..-...||.+-...++++ +.+.|+.-+...-..+-+-+
T Consensus 209 l~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 209 LEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 99999999999999999998754 5566889999999999999998888877766 34556666666666655555
Q ss_pred Hhc
Q 003315 822 EKA 824 (831)
Q Consensus 822 ~~~ 824 (831)
.++
T Consensus 289 ~~v 291 (292)
T PF13929_consen 289 KKV 291 (292)
T ss_pred Hhc
Confidence 443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.28 E-value=7.2 Score=38.41 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=25.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCChhhHHHHHHHH
Q 003315 422 VDSLCKLGEVEKAMILFKEMKDRQIVP-DVVNYTTMICGYCLQGKLGDALDLFKEM 476 (831)
Q Consensus 422 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 476 (831)
.+-|.+.|.+++|++.|...... .| +++++..-..+|.+..++..|..--...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 34455555555555555543332 22 4445555555555555555444433333
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.22 E-value=85 Score=36.50 Aligned_cols=38 Identities=5% Similarity=0.041 Sum_probs=25.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003315 495 FAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCM 532 (831)
Q Consensus 495 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 532 (831)
+......+.+..+++.+....-.++....+.++..|++
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 44556667777777777766555566666777666654
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.09 E-value=3 Score=26.77 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 777 VTYTALLCGYLAKGDLDRAIALVDEMSV 804 (831)
Q Consensus 777 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 804 (831)
.+++.|...|...|++++|.+++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777776653
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=82.97 E-value=2.2 Score=25.67 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRG 200 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 200 (831)
++..++.++.+.|++++|+..|+++++.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 34466777777777777777777776653
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=82.82 E-value=3.3 Score=25.15 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRG 200 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 200 (831)
.+|..++..|...|++++|...|+++++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 356788888888888888888888887653
|
... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.46 E-value=3 Score=26.75 Aligned_cols=28 Identities=11% Similarity=0.175 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003315 742 ISYTVLIAKLCNTQNLEDGITVFNEISD 769 (831)
Q Consensus 742 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 769 (831)
.+++.+...|...|++++|.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 5788999999999999999999999875
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.44 E-value=32 Score=29.86 Aligned_cols=51 Identities=8% Similarity=-0.103 Sum_probs=24.8
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 288 NGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
.++.+++..++..+.-.. |.....-..-...++..|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 445555555555544432 222223333344445556666666666666554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.42 E-value=7.8 Score=41.18 Aligned_cols=102 Identities=10% Similarity=-0.008 Sum_probs=73.2
Q ss_pred CCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHH
Q 003315 130 CGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCN 209 (831)
Q Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 209 (831)
.|+...|...+..++...|..++. ....|+....+.|..-+|-.++.+.+... ...+.++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v------------------~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~ 680 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDV------------------PLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFL 680 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcc------------------cHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHH
Confidence 677778888777766654432211 23367777778888888888888877766 33556677
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003315 210 YFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC 251 (831)
Q Consensus 210 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (831)
.+.+++....+.+.|++.|.+..+.. +.++..-+.|...-|
T Consensus 681 ~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 681 SLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred hcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 88888888899999999998888764 456677777776655
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.39 E-value=19 Score=38.73 Aligned_cols=100 Identities=14% Similarity=0.114 Sum_probs=54.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003315 562 CKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQ 641 (831)
Q Consensus 562 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 641 (831)
.+.|+++.|.++..+.. +..-|..|..+....+++..|.+.+.++.. |..|+-.+...|+.+.-.
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 34555555555544331 344556666666666666666666555443 234444455566655544
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003315 642 LVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDM 682 (831)
Q Consensus 642 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 682 (831)
.+-....+.|.. |.-..+|...|+++++.+++.+-
T Consensus 713 ~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 713 VLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 444444444332 34445566777777777776554
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=81.90 E-value=2.6 Score=27.72 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=15.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 781 ALLCGYLAKGDLDRAIALVDEMSV 804 (831)
Q Consensus 781 ~l~~~~~~~g~~~~A~~~~~~~~~ 804 (831)
.|..+|...|+.+.|+++++++..
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 355666666666666666666665
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=81.45 E-value=1e+02 Score=34.93 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHc---cCChhhHHHHHHHHHH
Q 003315 451 VNYTTMICGYCL---QGKLGDALDLFKEMKE 478 (831)
Q Consensus 451 ~~~~~li~~~~~---~g~~~~A~~~~~~~~~ 478 (831)
.-+..||..|.+ ..++.+|++++--+..
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 345666666654 3466666666665543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.32 E-value=13 Score=29.34 Aligned_cols=62 Identities=11% Similarity=0.155 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003315 721 DVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALL 783 (831)
Q Consensus 721 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~ 783 (831)
+.-+..+-++.+...++.|++....+.++++.+.+++.-|+.+|+-...+ +..+..+|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 44566777777778899999999999999999999999999999988854 333444565554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=81.09 E-value=13 Score=34.04 Aligned_cols=72 Identities=19% Similarity=0.109 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCChhhHHHHHHHHHhcCCHhHH
Q 003315 257 QEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEA---DIPLSAFAYTVVIRWFCDQNKLEKA 329 (831)
Q Consensus 257 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A 329 (831)
+.|++.|-.+...+.-.++.....|...|. ..|.++++.++....+. +-.+|+..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555555554443333333333333332 44455555555555443 1134455555555555555555544
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=81.04 E-value=2.2 Score=24.17 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILF 194 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~ 194 (831)
+...++..+...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34566777777777777776654
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.97 E-value=50 Score=31.12 Aligned_cols=22 Identities=5% Similarity=0.356 Sum_probs=13.6
Q ss_pred HhcCChHHHHHHHHHHHhCCCC
Q 003315 251 CKKGSMQEAVEVFLEMEKAGVT 272 (831)
Q Consensus 251 ~~~g~~~~A~~~~~~m~~~~~~ 272 (831)
...+++.+|+++|++.....+.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3456677777777776655433
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.88 E-value=81 Score=33.47 Aligned_cols=65 Identities=12% Similarity=-0.044 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHH-HHHcCChhHHHHHHHHHHhc
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQ-LVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~ 234 (831)
+...|...+.-+-+.+.+.+.-.+|.+++...+. ++..|-....- |-....++.|..+|..-++.
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 4445555555555555566666666666655432 33333322222 22223366666666665554
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=80.74 E-value=64 Score=32.15 Aligned_cols=157 Identities=13% Similarity=-0.070 Sum_probs=80.5
Q ss_pred cChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh----HHHHHHHHHHHhCCCCCCHHHH
Q 003315 203 WSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSM----QEAVEVFLEMEKAGVTPNAFAY 278 (831)
Q Consensus 203 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~m~~~~~~p~~~~~ 278 (831)
++.......+..+...|. +.+...+..+.+ .+|+..-...+.++.+.|+. .++...+..+... .|+...-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 455566666666766664 334444444443 24666666666777777763 4567777666433 4565555
Q ss_pred HHHHHHHHhcCCh-----hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003315 279 STCIEGLCMNGML-----DLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALIS 353 (831)
Q Consensus 279 ~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 353 (831)
...+.+++..+.. ..+...+..... .++..+....+.++.+.++ +++...+-.+.+. +|..+-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 5555555554321 122233222222 2255566666666666665 4455555555542 34444444444
Q ss_pred HHHhcC-ChHHHHHHHHHHH
Q 003315 354 GYCKFG-KINKALLLHHEMT 372 (831)
Q Consensus 354 ~~~~~~-~~~~A~~~~~~~~ 372 (831)
++.+.+ +.+.+...+..++
T Consensus 182 aLg~~~~~~~~~~~~L~~~L 201 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAML 201 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHh
Confidence 444432 1334444444444
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.71 E-value=10 Score=34.94 Aligned_cols=56 Identities=21% Similarity=0.304 Sum_probs=32.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 747 LIAKLCNTQNLEDGITVFNEISDRGLEP-DTVTYTALLCGYLAKGDLDRAIALVDEMSV 804 (831)
Q Consensus 747 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 804 (831)
-+..+.+.+.+++|+...+.-++. +| |..+...|+..|+-.|++++|..-++-...
T Consensus 7 t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 344455666666666666655542 33 333444556666666666666666665554
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=80.07 E-value=2.3 Score=25.55 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=14.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 781 ALLCGYLAKGDLDRAIALVDEMSV 804 (831)
Q Consensus 781 ~l~~~~~~~g~~~~A~~~~~~~~~ 804 (831)
.++.++.+.|++++|.+.|+++.+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 445555666666666666666655
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 76.0 bits (185), Expect = 3e-14
Identities = 19/168 (11%), Positives = 50/168 (29%), Gaps = 8/168 (4%)
Query: 421 IVDSLCKLGEVEKAMIL---FKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMK 477
++ A L + ++ + + Y ++ G+ QG + + + +K
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 478 EMGHKPDIITYNVLAGAFAQYG-AVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRV 536
+ G PD+++Y + L M + GL+ + +++ +
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252
Query: 537 EEAEAFLDGLKG----KCLENYSAMINGYCKTGHTKEAFQLFMRLSNQ 580
+ N S ++ +L + L
Sbjct: 253 KAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTL 300
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 73.3 bits (178), Expect = 2e-13
Identities = 28/166 (16%), Positives = 54/166 (32%), Gaps = 17/166 (10%)
Query: 627 LIGALCQAEEMEQAQLVFNVL---VDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMK 683
+++ A + V K L Y ++ G+ + +E V +K
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 684 QRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVIS 743
G+TPD+++Y + +D +M + G++ +
Sbjct: 193 DAGLTPDLLSYAAALQCMGR--------------QDQDAGTIERCLEQMSQEGLKLQALF 238
Query: 744 YTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAK 789
VL+++ L+ V S P V + LL AK
Sbjct: 239 TAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 72.5 bits (176), Expect = 4e-13
Identities = 26/237 (10%), Positives = 76/237 (32%), Gaps = 33/237 (13%)
Query: 222 DMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTC 281
MA + ++ S E +++ K S+ + +A ++
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 282 IEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGV 341
+ + L L + LL+ ++
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHG--------------------------------QRQKRK 161
Query: 342 VPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIK 401
+ + Y+A++ G+ + G + + + + G+ + + L+ + ++ + TI+
Sbjct: 162 LLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIE 221
Query: 402 QFL-EFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMI 457
+ L + G L + V++ + ++ + +P VN + ++
Sbjct: 222 RCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLL 278
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 70.6 bits (171), Expect = 2e-12
Identities = 37/352 (10%), Positives = 86/352 (24%), Gaps = 11/352 (3%)
Query: 329 AECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILK 388
A C+ + P + L+ ++ + + + L K
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 389 GLCQKGM---ASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQ 445
A + + L Y+ ++ + G ++ + + +KD
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 446 IVPDVVNYTTMICGYCLQGK-LGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKA 504
+ PD+++Y + Q + G ++M + G K + VL + ++
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 505 FDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKT 564
+ P V + ++ + LK +
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASR 315
Query: 565 GHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMY 624
+ + K L + + +
Sbjct: 316 VCVVSVEKPTLPSKEVKHARK-------TLKTLRDQWEKALCRALRETKNRLEREVYEGR 368
Query: 625 DKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREAR 676
L LC +E E +++ VL T + R
Sbjct: 369 FSLYPFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQR 420
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 67.5 bits (163), Expect = 1e-11
Identities = 26/166 (15%), Positives = 54/166 (32%), Gaps = 4/166 (2%)
Query: 211 FMNQLVECGKVDMALAVYQHLKRL---GLSLNEYTYVIVIKALCKKGSMQEAVEVFLEME 267
F + ++ +A + L Y V+ ++G+ +E V V ++
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 268 KAGVTPNAFAYSTCIEGLCMNGMLDLGYE-LLLKWEEADIPLSAFAYTVVIRWFCDQNKL 326
AG+TP+ +Y+ ++ + E L + + + L A V++ L
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252
Query: 327 EKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMT 372
+ V +P S L+ LH +
Sbjct: 253 KAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLK 298
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 55.2 bits (131), Expect = 9e-08
Identities = 22/164 (13%), Positives = 49/164 (29%), Gaps = 19/164 (11%)
Query: 672 LREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNE 731
L + Q ++ F + + A
Sbjct: 108 LDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTD---------------QLPLAHHLLVV 152
Query: 732 MKEMGIR---PDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLA 788
+ + Y ++ ++ + V + D GL PD ++Y A L
Sbjct: 153 HHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR 212
Query: 789 KGDLDRAIA-LVDEMSVKGIQGDDYTKSSLERGIEKARILQYRH 831
+ I +++MS +G++ + L ++A +L+ H
Sbjct: 213 QDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVH 256
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.4 bits (103), Expect = 2e-04
Identities = 34/358 (9%), Positives = 97/358 (27%), Gaps = 32/358 (8%)
Query: 88 VEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKK 147
+ + + + + Q ++ S A + +L+ ++
Sbjct: 98 LLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR 157
Query: 148 TDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICS 207
+ L + +A++ + G F E + +LF + G + S
Sbjct: 158 Q---------------KRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 208 CNYFMNQLVECGKVDMALAVY-QHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEM 266
+ + + + + + + GL L +++ + ++ +V
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262
Query: 267 EKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKL 326
P S + + +L L + F Q +
Sbjct: 263 SLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCL------------FEKQLHM 310
Query: 327 EKAECVLLHMEKQGVVPDVYAYSALISG----YCKFGKINKALLLHHEMTSKGIKTNCGV 382
E A V + ++ +P A + + +AL + +
Sbjct: 311 ELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFS 370
Query: 383 LSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKE 440
L L L ++ + ++ G + ++ + + + + +
Sbjct: 371 LYPFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQ 428
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.2 bits (176), Expect = 5e-13
Identities = 76/522 (14%), Positives = 155/522 (29%), Gaps = 156/522 (29%)
Query: 395 MASATIKQFLEFKDMGFFLNKVCYDVIVDSLCK-LGEVEKAMILFKEMKDRQIVPDVVNY 453
M T + ++KD+ + + CK + ++ K+++ +E+ + D V+
Sbjct: 7 MDFETGEHQYQYKDILSVFED---AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 454 TTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKR 513
T + L K + + F E + + Y L + Q + Y+++
Sbjct: 64 TLRLFW-TLLSKQEEMVQKFVEE---VLRIN---YKFLMSPI-KTEQRQPSMMTRMYIEQ 115
Query: 514 HG--------LEPNFVT----HNMIIEGLC------------MGG--------------- 534
V+ + + + L + G
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 535 ---------------RVEEAEAFLDGLKGKCLE---NYSAMINGYCKTGHTKEAFQLFMR 576
E L+ L+ + N+++ + + Q
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA--E 233
Query: 577 LSNQGVLVKKSSCNKLITNLLILRD--NNNALKLF----KTMITLNAEPSKSMYDKLIGA 630
L +L K N LL+L + N A F K ++T K + D L A
Sbjct: 234 LRR--LLKSKPYEN----CLLVLLNVQNAKAWNAFNLSCKILLTTR---FKQVTDFLSAA 284
Query: 631 LCQAEEMEQAQLVFNVLVDKGLTPH-----LVTYTMMIHGYCKINCL-REARDV------ 678
++ LTP L+ Y C+ L RE
Sbjct: 285 TTTHISLDH--------HSMTLTPDEVKSLLLKYL-----DCRPQDLPREVLTTNPRRLS 331
Query: 679 -FNDMKQRGI-TPDVVTYTVLFDAHSKINLKGSSSSPDALQCKED---VVDASVF----- 728
+ + G+ T D + V D + I SS + L+ E SVF
Sbjct: 332 IIAESIRDGLATWDNWKH-VNCDKLTTII----ESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 729 ---------WNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTY 779
W ++ + + ++ + +L ++ + T++
Sbjct: 387 IPTILLSLIWFDVIKSDVM--------VVVNKLHKYSL----------VEKQPKESTISI 428
Query: 780 TALLCGYLAKGDLDRAI--ALVDEMSV-KGIQGDDYTKSSLE 818
++ K + + A+ ++VD ++ K DD L+
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 70.3 bits (171), Expect = 2e-12
Identities = 94/657 (14%), Positives = 184/657 (28%), Gaps = 225/657 (34%)
Query: 57 CSD-SELEESSVNNEHNDEIKCSFSYLNTREVVEKLYSL-----RKEPKIALSFFEQLKR 110
C D ++ +S ++ E D I + +++ V L K+ ++ F E++ R
Sbjct: 35 CKDVQDMPKSILSKEEIDHI------IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88
Query: 111 SGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEA------------TDLI 158
+ + R Q + + + R + + + L
Sbjct: 89 INYKFLMSPIKTEQR-------QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 159 EALC--------------GEGSTLLTR--LSDAMIKA-------YVSVGMFDEGIDILFQ 195
+AL G G T + ++ ++++ + +L
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEY--TYVI-------- 245
+ + + N+ ++ L+RL L Y ++
Sbjct: 202 LQK---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLLNVQNAK 257
Query: 246 VIKAL---CK------------KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGM 290
A CK S + L+ +TP+ E
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--------EVK----- 304
Query: 291 LDLGYELLLKW---EEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYA 347
LLLK+ D+P N L
Sbjct: 305 -----SLLLKYLDCRPQDLPREV----------LTTNPR-----RL-------------- 330
Query: 348 YSALISGYCKFGKINKALLLHHEMTSKGIKT-NCGVLSVILKGLCQKGMASATIKQFLEF 406
++I+ + T K NC L+ I++ + A ++ F
Sbjct: 331 --SIIA----------ESIRDGLATWDNWKHVNCDKLTTIIE-SSLNVLEPAEYRKM--F 375
Query: 407 KDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKL 466
+ F + L +++ ++ + V VVN KL
Sbjct: 376 DRLSVFPPSA--HIPTILLS---------LIWFDV-IKSDVMVVVN------------KL 411
Query: 467 GDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMI 526
+ K+ KE T ++ + +K LE + H I
Sbjct: 412 HKYSLVEKQPKES-------TISIP--------------SIYLELKVK-LENEYALHRSI 449
Query: 527 IEGLCMGGRVEEAEAF-LDGLKGKCLENYSAMINGYCKTGHTKEA-----FQLFMRL-SN 579
++ + F D L L+ Y G+ H K LF + +
Sbjct: 450 VD------HYNIPKTFDSDDLIPPYLDQYFYSHIGH----HLKNIEHPERMTLFRMVFLD 499
Query: 580 QGVLVKK-----SSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGAL 631
L +K ++ N + L L+ LK +K I N +P Y++L+ A+
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQ----LKFYKPYICDN-DPK---YERLVNAI 548
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 7e-04
Identities = 62/476 (13%), Positives = 121/476 (25%), Gaps = 91/476 (19%)
Query: 178 KAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLS 237
+ Y G + +L + S LV+ AL +
Sbjct: 125 QVYCCTGDYARAKCLLT--KEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKD 182
Query: 238 LNE----YTYVIVIK-----------ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCI 282
IK + A E + E A+ +
Sbjct: 183 EKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLV 241
Query: 283 EGLCMNGMLDLGYELLLKWEEADIPLSAFA---YTVVIRWFCDQNKLEKAECVLLHMEKQ 339
+ + L L + +AF Y + + +++L +AE L +
Sbjct: 242 SNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL 301
Query: 340 GVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASAT 399
+ L +T+K ++ +
Sbjct: 302 E--KSSDLLLCKADTLFVRSRFIDVL----AITTKILEID-------------------- 335
Query: 400 IKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVN-YTTMIC 458
L+ Y + + SL + GE K ++ ++ DR P+ + +
Sbjct: 336 -PYNLD-----------VYPLHLASLHESGEKNKLYLISNDLVDRH--PEKAVTWLAVGI 381
Query: 459 GYCLQGKLGDALDLFKEMKEMGHKPD-IITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLE 517
Y K+ +A F + M P + A +FA G +A + Y L
Sbjct: 382 YYLCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQA--ISAYTTAARLF 437
Query: 518 PNFVT--HNMIIEGLCMG--GRVEEAEAFLDGLKGKCLE---NYSAMING----YCKTGH 566
+ G+ G + A +L ++N
Sbjct: 438 QGTHLPYLFL---GMQHMQLGNILLANEYLQ----SSYALFQYDPLLLNELGVVAFNKSD 490
Query: 567 TKEAFQLFMR---LSNQGVLVKKSSC---NKLITNLLILRDNNNALKLFKTMITLN 616
+ A F L + +K L L+ + A+ + L+
Sbjct: 491 MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 831 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.77 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.75 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.75 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.74 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.7 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.65 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.64 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.62 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.62 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.61 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.61 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.6 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.59 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.59 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.58 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.58 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.57 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.57 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.57 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.56 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.56 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.56 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.53 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.49 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.48 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.47 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.46 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.46 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.46 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.45 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.42 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.42 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.41 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.41 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.4 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.37 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.34 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.33 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.33 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.32 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.31 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.29 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.28 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.28 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.24 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.23 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.23 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.19 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.17 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.11 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.09 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.07 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.07 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.06 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.06 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.05 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.04 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.03 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.03 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.02 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.01 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.99 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.98 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.97 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.97 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.96 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.96 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.96 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.94 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.94 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.93 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.93 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.93 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.91 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.89 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.84 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.83 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.82 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.78 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.75 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.73 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.73 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.73 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.71 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.7 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.7 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.67 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.66 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.62 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.61 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.61 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.6 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.59 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.58 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.57 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.55 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.55 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.54 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.53 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.52 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.52 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.51 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.51 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.49 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.48 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.48 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.47 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.47 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.47 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.46 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.45 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.44 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.44 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.43 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.42 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.38 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.38 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.37 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.37 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.36 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.33 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.31 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.3 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.3 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.28 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.27 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.25 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.25 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.23 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.23 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.22 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.22 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.21 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.2 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.17 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.14 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.13 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.12 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.1 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.03 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.03 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.01 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.01 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.0 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.0 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.0 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.98 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.98 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.97 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.96 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.96 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.96 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.95 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.94 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.93 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.91 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.82 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.81 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.79 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.73 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.72 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.69 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.67 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.65 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.64 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.64 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.63 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.54 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.46 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.44 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.31 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.25 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.23 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.02 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.95 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.9 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.86 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.73 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.71 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.7 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.68 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.65 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.6 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.46 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.35 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.3 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.22 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.19 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.19 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.1 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.91 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.65 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.54 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.44 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.22 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.12 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.96 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.93 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.9 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.7 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.66 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 92.78 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.76 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.5 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.22 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.73 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.31 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.71 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 89.84 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.42 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.25 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.46 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.24 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 87.99 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 87.37 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.67 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 84.79 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 84.47 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.62 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 81.82 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 80.81 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 80.42 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-38 Score=355.65 Aligned_cols=512 Identities=10% Similarity=-0.008 Sum_probs=328.2
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH
Q 003315 180 YVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEA 259 (831)
Q Consensus 180 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (831)
+...|.+..+...+..+ +.++...++.++..+.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHH
Confidence 34445555554444332 2346677788888888888888888888887753 36777777788888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 260 VEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 260 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
+.+|+++... +++..+++.++.+|.+.|++++|.++|+++... +.. ...+.+.++ ...
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-----~~~~~~~~~-----------~~~ 194 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPF----RKD-----EKNANKLLM-----------QDG 194 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTT----C---------------C-----------CCS
T ss_pred HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCc----ccc-----ccccccccc-----------ccc
Confidence 8888877543 567777777777788888888877777742111 100 000000000 011
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHH--HH-HHHHHHCCCCcCHh
Q 003315 340 GVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATI--KQ-FLEFKDMGFFLNKV 416 (831)
Q Consensus 340 ~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~ 416 (831)
+..++..+|+.++.+|.+.|++++|++.|+++.+.+.. +...+..+...+...+..+... .+ +..+...+..+...
T Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 273 (597)
T 2xpi_A 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273 (597)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHH
Confidence 23345666777777777777777777777777664322 2233333332222221111111 00 23333333444556
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 003315 417 CYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFA 496 (831)
Q Consensus 417 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 496 (831)
+|+.++..|.+.|++++|.++|+++.+. +++..+++.++.+|.+.|++++|.++|+++.+.++. +..++..++.++.
T Consensus 274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 350 (597)
T 2xpi_A 274 LYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLH 350 (597)
T ss_dssp HHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHH
Confidence 6777788888889999999999888764 468888999999999999999999999998877644 7788888999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcCCHHHHHHH
Q 003315 497 QYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTGHTKEAFQL 573 (831)
Q Consensus 497 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~ 573 (831)
+.|++++|..+++++.+.. +.+..++..++.+|.+.|++++|.++|+++.+.+|.. |+.++..|.+.|++++|+++
T Consensus 351 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999888653 5667778888888888888888888777766544432 55555555555555555555
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003315 574 FMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLT 653 (831)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 653 (831)
|+++.+. + +.+..++..++.+|.+.|++++|.++|+++.+....
T Consensus 430 ~~~~~~~-----------------------------------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 473 (597)
T 2xpi_A 430 YTTAARL-----------------------------------F-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY 473 (597)
T ss_dssp HHHHHHT-----------------------------------T-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHh-----------------------------------C-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 5555443 2 345667777888888888888888888888775433
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHH
Q 003315 654 PHLVTYTMMIHGYCKINCLREARDVFNDMKQR----GITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFW 729 (831)
Q Consensus 654 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 729 (831)
+..+|+.++..|.+.|++++|+++|+++.+. +..|+.
T Consensus 474 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~-------------------------------------- 514 (597)
T 2xpi_A 474 -DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP-------------------------------------- 514 (597)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG--------------------------------------
T ss_pred -ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh--------------------------------------
Confidence 6778888888888888888888888888764 333330
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 003315 730 NEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQG 809 (831)
Q Consensus 730 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 809 (831)
...+|..++.+|.+.|++++|++.++++.+.+ +.+..+|..++.+|.+.|++++|.+.++++.+ +.|
T Consensus 515 ----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p 581 (597)
T 2xpi_A 515 ----------WAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISP 581 (597)
T ss_dssp ----------GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCT
T ss_pred ----------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCC
Confidence 03355566666666677777777777766542 33566667777777777777777777777666 455
Q ss_pred CHH
Q 003315 810 DDY 812 (831)
Q Consensus 810 d~~ 812 (831)
+..
T Consensus 582 ~~~ 584 (597)
T 2xpi_A 582 NEI 584 (597)
T ss_dssp TCH
T ss_pred CCh
Confidence 543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=350.69 Aligned_cols=499 Identities=9% Similarity=-0.026 Sum_probs=356.1
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 003315 168 LLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVI 247 (831)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 247 (831)
.+...|..++..|.+.|++++|+.+|+++... .|+..++..++.++.+.|++++|..+|+.+... ++++.+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 56778999999999999999999999999865 457788899999999999999999999998653 58899999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHh
Q 003315 248 KALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLE 327 (831)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 327 (831)
.+|.+.|++++|+++|+++.. +.. ...++...++. ..+.+.+..+|+.++.+|.+.|+++
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNP-----FRK----DEKNANKLLMQ-----------DGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCT-----TC--------------CC-----------CSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhHHHHHHHHhccCC-----ccc----ccccccccccc-----------ccccchhHHHHHHHHHHHHHcCCHH
Confidence 999999999999999986322 110 00011111111 1123445556666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH--H-HHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 003315 328 KAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALL--L-HHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFL 404 (831)
Q Consensus 328 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~--~-~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 404 (831)
+|.++|+++.+.++. +...+..++..+...+..+.+.. + +..+...+..+...++..++..|.+.|++++|.+.|+
T Consensus 218 ~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 218 RAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 666666666654332 34444444443333322221111 1 3333333333333444444555666666666666666
Q ss_pred HHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCC
Q 003315 405 EFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPD 484 (831)
Q Consensus 405 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 484 (831)
.+.+. +++..+++.++.+|.+.|++++|.++|+++.+.+. .+..++..++.++.+.|++++|.++++++.+..+ .+
T Consensus 297 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~ 372 (597)
T 2xpi_A 297 SINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EK 372 (597)
T ss_dssp TSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TS
T ss_pred HhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-cc
Confidence 65544 35677777777777777777777777777765543 2566777777777777888888888877775543 35
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHH
Q 003315 485 IITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGY 561 (831)
Q Consensus 485 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~ 561 (831)
..++..++..|.+.|++++|.++|+++.+.. +.+..++..++.+|.+.|++++|.++|+++....|.. |..++.+|
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 6677777777777888888888887777653 4456677777778888888888888887777665543 77778888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcC
Q 003315 562 CKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITL----NAEPS--KSMYDKLIGALCQAE 635 (831)
Q Consensus 562 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g 635 (831)
.+.|++++|.++|+++.+..+. +..++..++..+.+.|++++|.++++++.+. +..|+ ..+|..++.+|.+.|
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 8888888888888888776554 6778888888888888888888888888776 55677 789999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 003315 636 EMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPD-VVTYTVLFDA 700 (831)
Q Consensus 636 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~ 700 (831)
++++|...|+++.+.++ .+..+|..++.+|.+.|++++|.+.|+++.+. .|+ ...+..+-..
T Consensus 531 ~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLST-NDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDLLKRA 593 (597)
T ss_dssp CHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHH
Confidence 99999999999998753 37889999999999999999999999999884 554 3444444333
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-26 Score=246.56 Aligned_cols=369 Identities=13% Similarity=0.067 Sum_probs=268.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG 254 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (831)
.++..+.+.|++++|+..+.++.+..+. +...+..+...+...|++++|...++...+.. +.+..+|..++..+.+.|
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 3567788999999999999999988744 67778888899999999999999999988764 567889999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHH
Q 003315 255 SMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLL 334 (831)
Q Consensus 255 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 334 (831)
++++|++.|+++.+.. +.+..++..++.++.+.|++++|...|+++.+.+ |.+...+..+...+...|++++|.+.|+
T Consensus 82 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999998863 3456689999999999999999999999999875 6667788899999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC
Q 003315 335 HMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLN 414 (831)
Q Consensus 335 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 414 (831)
++.+..+. +..+|..+...+.+.|++++|+..|+++++.++. +...+..+...+...|++++|+..+.+.....+. +
T Consensus 160 ~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~ 236 (388)
T 1w3b_A 160 KAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H 236 (388)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-C
Confidence 99987544 6788999999999999999999999999876432 3445555666666666666666666665554322 3
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHH
Q 003315 415 KVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGA 494 (831)
Q Consensus 415 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 494 (831)
..++..+...+.+.|++++|++.|+++.+.+.. +..+|..+...+.+.|++++|.+.|+++.+..+ .+..++..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHH
Confidence 455555666666666666666666665554221 344555555666666666666666666655432 244555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC
Q 003315 495 FAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN 553 (831)
Q Consensus 495 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 553 (831)
+...|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++.+.+|..
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~ 372 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 666666666666666655542 3344555555555555555555555555555544443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-26 Score=243.44 Aligned_cols=383 Identities=16% Similarity=0.051 Sum_probs=333.2
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 003315 123 IVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFV 202 (831)
Q Consensus 123 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 202 (831)
++..+...|++++|...+..+++..|+ ++.++..++..+...|++++|...++.+++..+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p- 64 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD-------------------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP- 64 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-
Confidence 456677889999999999998888554 456778899999999999999999999998874
Q ss_pred cChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003315 203 WSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCI 282 (831)
Q Consensus 203 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 282 (831)
.+..++..++.++.+.|++++|...|+++.+.. |.+..+|..++..+.+.|++++|++.|+++.+.. +.+...+..+.
T Consensus 65 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 142 (388)
T 1w3b_A 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLG 142 (388)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 488899999999999999999999999999864 4456789999999999999999999999999864 33456777888
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003315 283 EGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKIN 362 (831)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 362 (831)
..+...|++++|.+.|+++.+.. |.+..++..+...+...|++++|...|+++.+.++. +...|..+...+...|+++
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~ 220 (388)
T 1w3b_A 143 NLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHH
Confidence 89999999999999999999875 667889999999999999999999999999987654 6788999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 363 KALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMK 442 (831)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (831)
+|+..+++....... +..++..+...+...|++++|++.++.+.+..+. +..++..+...+.+.|++++|.+.|+++.
T Consensus 221 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 221 RAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999876432 5778889999999999999999999999987543 57789999999999999999999999998
Q ss_pred hCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003315 443 DRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVT 522 (831)
Q Consensus 443 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 522 (831)
+.. +.+..++..+...+...|++++|...++++.+..+ .+..++..+...+.+.|++++|...++++++.. +.+...
T Consensus 299 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a 375 (388)
T 1w3b_A 299 RLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADA 375 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHH
T ss_pred hhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHH
Confidence 763 44788999999999999999999999999988643 356789999999999999999999999999864 456677
Q ss_pred HHHHHHHHHcCC
Q 003315 523 HNMIIEGLCMGG 534 (831)
Q Consensus 523 ~~~l~~~~~~~g 534 (831)
+..+...+...|
T Consensus 376 ~~~lg~~~~~~~ 387 (388)
T 1w3b_A 376 YSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHhHHHHHHHcc
Confidence 777776665554
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-28 Score=259.38 Aligned_cols=205 Identities=16% Similarity=0.194 Sum_probs=180.5
Q ss_pred HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC---------HHH
Q 003315 605 ALKLFKTMITLNAEPSK-SMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINC---------LRE 674 (831)
Q Consensus 605 a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---------~~~ 674 (831)
+..+.+++.+.+..+.+ .+++.++++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. .++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 33444555555554443 46888999999999999999999999999999999999999999987664 688
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003315 675 ARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNT 754 (831)
Q Consensus 675 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 754 (831)
|.++|++|.+.|+.||..||+++|.+|++ .+++++|.++|++|.+.|+.||..+||.+|.+|++.
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~---------------~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~ 153 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVA---------------KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK 153 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHH---------------HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHh---------------cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC
Confidence 99999999999999999999999999998 567999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003315 755 QNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLERGIEKA 824 (831)
Q Consensus 755 g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~ 824 (831)
|++++|.++|++|.+.|+.||..||++|+.+|++.|++++|.+++++|.+.|+.|+..|++.+...+...
T Consensus 154 g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 154 GDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999888764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-27 Score=252.09 Aligned_cols=206 Identities=16% Similarity=0.143 Sum_probs=178.5
Q ss_pred HHHHHHHHHHhCCCCCCcc-cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------HH
Q 003315 569 EAFQLFMRLSNQGVLVKKS-SCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEE---------ME 638 (831)
Q Consensus 569 ~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---------~~ 638 (831)
.+..+.+++.+.+....+. .++.++.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 4445556666666655544 5788899999999999999999999999999999999999999987665 68
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhc
Q 003315 639 QAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQC 718 (831)
Q Consensus 639 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 718 (831)
+|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~--------------- 152 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR--------------- 152 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH---------------
Confidence 89999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003315 719 KEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAK 789 (831)
Q Consensus 719 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~ 789 (831)
.++.++|.++|++|.+.|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|...
T Consensus 153 ~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 153 KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 56799999999999999999999999999999999999999999999999999999999999999988764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-23 Score=228.36 Aligned_cols=446 Identities=10% Similarity=-0.051 Sum_probs=283.3
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
....+...+..+.+.|++++|+..|+++++.+ |+..++..++.++.+.|++++|...|+++++.+ +.+..+|..++.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 34567789999999999999999999999886 578889999999999999999999999998865 456778999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhH
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEK 328 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 328 (831)
++.+.|++++|+..|+++.+.+ +++......++..+........+.+.+..+...+..++...................
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 9999999999999999998875 344444444444444433333333333222221111111100000000000111111
Q ss_pred HHHHHHHHHHCCCC--------C-CHHHHHHHHHHHHh---cCChHHHHHHHHHHHh-----CCCCCCHhhHHHHHHHHH
Q 003315 329 AECVLLHMEKQGVV--------P-DVYAYSALISGYCK---FGKINKALLLHHEMTS-----KGIKTNCGVLSVILKGLC 391 (831)
Q Consensus 329 A~~~~~~~~~~~~~--------p-~~~~~~~li~~~~~---~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~ll~~~~ 391 (831)
...+...+...... | +...+......+.. .|++++|+..++++.+ ....|+....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------- 232 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL-------- 232 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH--------
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc--------
Confidence 11111111111000 1 13333334443443 5666666666666655 2112211000
Q ss_pred hcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHH
Q 003315 392 QKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALD 471 (831)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 471 (831)
.+.+...+..+...+...|++++|...++++.+... +...+..+...+...|++++|..
T Consensus 233 -------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~ 291 (514)
T 2gw1_A 233 -------------------KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYN 291 (514)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGG
T ss_pred -------------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHH
Confidence 012345666777778888888888888888776533 36677777788888888888888
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC
Q 003315 472 LFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCL 551 (831)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 551 (831)
.++++.+..+. +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++....|
T Consensus 292 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 369 (514)
T 2gw1_A 292 YFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP 369 (514)
T ss_dssp HHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 88888776433 56677777888888888888888888887764 44566777777777788888888888877766555
Q ss_pred CC---hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----cccHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCC
Q 003315 552 EN---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVK-----KSSCNKLITNLLI---LRDNNNALKLFKTMITLNAEPS 620 (831)
Q Consensus 552 ~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~ 620 (831)
.. +..++..+...|++++|...++++.+..+... ...+..++..+.. .|++++|...++++.... +.+
T Consensus 370 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 448 (514)
T 2gw1_A 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRS 448 (514)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTC
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-ccc
Confidence 43 66677777777788888777777765533211 2266666777777 777777777777776654 334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003315 621 KSMYDKLIGALCQAEEMEQAQLVFNVLVDK 650 (831)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 650 (831)
..++..++.+|.+.|++++|...|+++.+.
T Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 449 EQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 566666777777777777777777777765
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-23 Score=229.58 Aligned_cols=451 Identities=11% Similarity=-0.036 Sum_probs=304.4
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003315 205 ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEG 284 (831)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 284 (831)
...+...+..+.+.|++++|+..|+++++.. |++..|..++..+.+.|++++|++.++++.+.+ +.+..++..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3445556666666777777777777766643 566666666666767777777777777666653 3344566666666
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003315 285 LCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKA 364 (831)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A 364 (831)
+...|++++|...|+++.+.+ +++......++..+........+.+.+..+...+..|+......-......
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------- 154 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK------- 154 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhh-------
Confidence 666666666666666666654 334444444444444333333333333333332222222111110000000
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHh---cCCHHHHHHHHHHH
Q 003315 365 LLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCK---LGEVEKAMILFKEM 441 (831)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~ 441 (831)
....|+.......+..+...... .....+.+...+......+.. .|++++|...|+++
T Consensus 155 ---------~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 155 ---------QENLPSVTSMASFFGIFKPELTF----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCC----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred ---------ccCCchhHHHHHHHhhcCHHHHH----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 01111211111111000000000 000001124444444554544 78999999999988
Q ss_pred Hh-----CCC--------CCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 003315 442 KD-----RQI--------VPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLL 508 (831)
Q Consensus 442 ~~-----~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 508 (831)
.+ ... +.+...+..+...+...|++++|...++++.+..+. ...+..+...+...|++++|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77 311 223557778888899999999999999999987644 778888999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003315 509 NYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVK 585 (831)
Q Consensus 509 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 585 (831)
+.+.+.. +.+..++..+...+...|++++|...++++...+|.. +..++..+...|++++|+..++++.+..+. +
T Consensus 294 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 371 (514)
T 2gw1_A 294 DKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-A 371 (514)
T ss_dssp HHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-C
T ss_pred HHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-C
Confidence 9999874 5567788899999999999999999999998887765 777889999999999999999999887654 6
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHh
Q 003315 586 KSSCNKLITNLLILRDNNNALKLFKTMITLNAE-PS----KSMYDKLIGALCQ---AEEMEQAQLVFNVLVDKGLTPHLV 657 (831)
Q Consensus 586 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~ 657 (831)
...+..++..+...|++++|...++++...... ++ ..++..++.++.. .|++++|...++++.+.... +..
T Consensus 372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~ 450 (514)
T 2gw1_A 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQ 450 (514)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHH
Confidence 788999999999999999999999999875322 11 3488899999999 99999999999999987433 678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003315 658 TYTMMIHGYCKINCLREARDVFNDMKQRGITPDVV 692 (831)
Q Consensus 658 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 692 (831)
.+..++..|.+.|++++|...|++..+. .|+..
T Consensus 451 ~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~ 483 (514)
T 2gw1_A 451 AKIGLAQMKLQQEDIDEAITLFEESADL--ARTME 483 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccH
Confidence 8999999999999999999999999984 56543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-21 Score=210.68 Aligned_cols=327 Identities=14% Similarity=0.060 Sum_probs=243.4
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
+.+..++..++..+.+.|++++|+..|+++++..+. +..++..++.++...|++++|...|+++.+.+ +.+...+..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 346778999999999999999999999999987644 78899999999999999999999999999875 4568899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC-H---HHHHHH------------HHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKAGVTPN-A---FAYSTC------------IEGLCMNGMLDLGYELLLKWEEADIPLSA 310 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 310 (831)
+..|.+.|++++|++.|+++.+.. |+ . ..+..+ ...+...|++++|...++++.+.. |.+.
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 999999999999999999999763 44 3 455544 344788889999999998888764 6678
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 003315 311 FAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGL 390 (831)
Q Consensus 311 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 390 (831)
.++..++.+|.+.|++++|.+.|+++.+..+. +..++..++.+|.+.|++++|+..|+++.... |+.......+...
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~ 254 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHH
Confidence 88888888888899999999998888876433 67888888888888899999988888887643 2222211111000
Q ss_pred HhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHccCC
Q 003315 391 CQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPD-----VVNYTTMICGYCLQGK 465 (831)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~ 465 (831)
. .......++..+.+.|++++|...|+++.+.. |+ ...+..+...+.+.|+
T Consensus 255 ~----------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 255 K----------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp H----------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTC
T ss_pred H----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCC
Confidence 0 01112234666777777777777777776542 22 2356667777777788
Q ss_pred hhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003315 466 LGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMII 527 (831)
Q Consensus 466 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 527 (831)
+++|+..++++.+..+ .+...+..+..+|...|++++|...++++++.. +.+...+..+.
T Consensus 311 ~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 311 PVEAIRVCSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 8888888777766532 256677777777777788888888887777643 33444444443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-21 Score=208.92 Aligned_cols=304 Identities=10% Similarity=-0.012 Sum_probs=192.4
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
++..+..++..+...|++++|...|.++++..|. ++.++..++.+|...|++++|+..|++
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-------------------NYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-------------------cHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4555566666666666666666666666655332 344566666666666666666666666
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCh---hhHHHH------------HHHHHhcCChHHHH
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNE---YTYVIV------------IKALCKKGSMQEAV 260 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~A~ 260 (831)
+++.++. +..++..++.++.+.|++++|...|+++.+.. +.+. ..+..+ ...+.+.|++++|+
T Consensus 86 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 86 VIQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 6666533 55566666666666666666666666666543 2222 333333 33466777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 003315 261 EVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQG 340 (831)
Q Consensus 261 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 340 (831)
+.|+++.+.. +.+..++..++.+|...|++++|...++++.+.+ |.+..++..++..|...|++++|...|+++.+..
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777653 3456677777777777788888877777777654 5567777777777777888888888887777653
Q ss_pred CCCCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHhcCChHHHHHHHHH
Q 003315 341 VVPDVYAYSAL------------ISGYCKFGKINKALLLHHEMTSKGIKTN---CGVLSVILKGLCQKGMASATIKQFLE 405 (831)
Q Consensus 341 ~~p~~~~~~~l------------i~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~ 405 (831)
+. +...+..+ +..+.+.|++++|+..|+++.+...... ...+..+...+.+.|++++|+..++.
T Consensus 242 p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 242 QD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 32 34444433 6667777777777777777766432200 22455555666666666666666666
Q ss_pred HHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003315 406 FKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDR 444 (831)
Q Consensus 406 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 444 (831)
+....+ .+...+..+..+|...|++++|...++++.+.
T Consensus 321 a~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 321 VLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 555432 24566666666666777777777777666654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-21 Score=218.43 Aligned_cols=439 Identities=12% Similarity=0.009 Sum_probs=265.0
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
....+..++..+.+.|++++|+..|+++++.++. +..++..++.++.+.|++++|+..|+++++.+ +.+..++..++.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 4567889999999999999999999999998754 88899999999999999999999999999875 557888999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCH
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEAD--IPLSAFAYTVVIRWFCDQNKL 326 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 326 (831)
.+...|++++|++.|+ .... .|+.. ...+..+...+...+|...++++.... ..+........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHH-HHhc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 9999999999999996 4432 23322 222344555556678888888876541 011111122334445556666
Q ss_pred hHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh--------cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChH
Q 003315 327 EKAECVLLHMEKQGVVPDVY-AYSALISGYCK--------FGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMAS 397 (831)
Q Consensus 327 ~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 397 (831)
+.+...+...... .+... ....+...+.. .|++++|+..++++.+.... +...+..+
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~----------- 242 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENA----------- 242 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHH-----------
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHH-----------
Confidence 6555444433322 22222 22233333222 24677777777777765332 11111100
Q ss_pred HHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHH
Q 003315 398 ATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMK 477 (831)
Q Consensus 398 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 477 (831)
..++..+...+...|++++|...++++.+. .|+...+..+...+...|++++|...++++.
T Consensus 243 -----------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 243 -----------------ALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp -----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 112334445555556666666666655543 2334455555555556666666666666655
Q ss_pred HcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---h
Q 003315 478 EMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---Y 554 (831)
Q Consensus 478 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~ 554 (831)
+..+. +..++..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++...+|.. +
T Consensus 304 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 381 (537)
T 3fp2_A 304 DLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVP 381 (537)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred ccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 54332 44555555566666666666666666665543 3334455555556666666666666666655554443 5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CcccHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCC
Q 003315 555 SAMINGYCKTGHTKEAFQLFMRLSNQGVLV-----KKSSCNKLITNLLIL----------RDNNNALKLFKTMITLNAEP 619 (831)
Q Consensus 555 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~p 619 (831)
..++..+...|++++|...++++.+..+.. ....+......+... |++++|...++++.+.. +.
T Consensus 382 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~ 460 (537)
T 3fp2_A 382 TFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PR 460 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CC
Confidence 555666666666666666666655443211 111133445566666 77777777777777654 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003315 620 SKSMYDKLIGALCQAEEMEQAQLVFNVLVDK 650 (831)
Q Consensus 620 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 650 (831)
+..++..++.+|.+.|++++|...|+++.+.
T Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 461 SEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5667777788888888888888888887775
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-21 Score=214.71 Aligned_cols=429 Identities=13% Similarity=0.006 Sum_probs=253.3
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
....+...+..+...|++++|...|.++++..|. ++.++..++.+|...|++++|+..|++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------------------~~~~~~~la~~~~~~g~~~~A~~~~~~ 84 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-------------------EPVFYSNISACYISTGDLEKVIEFTTK 84 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-------------------CcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3566788899999999999999999999988554 567899999999999999999999999
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-----
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAG----- 270 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~----- 270 (831)
+++.++. +..++..++.++...|++++|...|+. ... .|+. ....+..+...+...+|...++++....
T Consensus 85 al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 158 (537)
T 3fp2_A 85 ALEIKPD-HSKALLRRASANESLGNFTDAMFDLSV-LSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGS 158 (537)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHhcCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHH-Hhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 9998754 888899999999999999999999974 332 2322 2223445666677789999999986531
Q ss_pred -CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh--------cCCHhHHHHHHHHHHHCCC
Q 003315 271 -VTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCD--------QNKLEKAECVLLHMEKQGV 341 (831)
Q Consensus 271 -~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~ 341 (831)
..|+.. .+..+....+.+.+...+....... +........+...+.. .|++++|..+++++.+..+
T Consensus 159 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p 233 (537)
T 3fp2_A 159 QVLPSNT----SLASFFGIFDSHLEVSSVNTSSNYD-TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT 233 (537)
T ss_dssp CCCCCHH----HHHHHHHTSCHHHHHHTSCCCCSSC-SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C
T ss_pred cccchHh----HHHHHHHhcChHHHHHHHhhccccc-cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC
Confidence 123332 3334445555555444333222111 1111123333333222 2578999999999988643
Q ss_pred CCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC
Q 003315 342 VPDV-------YAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLN 414 (831)
Q Consensus 342 ~p~~-------~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 414 (831)
. +. .++..+...+...|++++|...+++..+.. |+...+..+...+...|++++|+..++.+.+.... +
T Consensus 234 ~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 309 (537)
T 3fp2_A 234 V-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-Y 309 (537)
T ss_dssp C-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-C
T ss_pred C-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-C
Confidence 3 32 245566677778888888888888877653 23444444455555555555555555554443321 3
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHH
Q 003315 415 KVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGA 494 (831)
Q Consensus 415 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 494 (831)
..++..+...+...|++++|...+++ +.+..+. +...+..+...
T Consensus 310 ~~~~~~l~~~~~~~~~~~~A~~~~~~-----------------------------------a~~~~~~-~~~~~~~la~~ 353 (537)
T 3fp2_A 310 PPTYYHRGQMYFILQDYKNAKEDFQK-----------------------------------AQSLNPE-NVYPYIQLACL 353 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-----------------------------------HHHHCTT-CSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH-----------------------------------HHHhCCC-CHHHHHHHHHH
Confidence 34444444444444555555554444 4443221 33344444444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC---C------hHHHHHHHHhc-
Q 003315 495 FAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLE---N------YSAMINGYCKT- 564 (831)
Q Consensus 495 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~------~~~l~~~~~~~- 564 (831)
+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++...+|. . +..+...+...
T Consensus 354 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 432 (537)
T 3fp2_A 354 LYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQS 432 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHh
Confidence 444455555555554444432 233334444444455555555555555444332111 1 12223444445
Q ss_pred ---------CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003315 565 ---------GHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLN 616 (831)
Q Consensus 565 ---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 616 (831)
|++++|...|+++.+..+. +...+..++..+...|++++|...++++.+..
T Consensus 433 ~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 433 SQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp TC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 6666777777666665543 55666677777777777777777777777654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-16 Score=178.41 Aligned_cols=541 Identities=12% Similarity=0.113 Sum_probs=359.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHH-H---HHH-----HHHHhcCCCCChh----
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMA-L---AVY-----QHLKRLGLSLNEY---- 241 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~---~~~-----~~~~~~~~~~~~~---- 241 (831)
.|+...-+.+++.--...++.-+..|.. ++.++|+++..|+..++-.+. + ..| -+.-+.. .|...
T Consensus 844 ~lv~~~ekrnrLkll~p~LE~~~~~g~~-~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~r-Dp~la~iay 921 (1630)
T 1xi4_A 844 ELVAEVEKRNRLKLLLPWLEARIHEGCE-EPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKR-DPHLACVAY 921 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhc-CcchHHHHh
Confidence 5566666666666666667766666633 777788888877765543322 1 001 1111100 11110
Q ss_pred ----hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCChhhHHH
Q 003315 242 ----TYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADI--PLSAFAYTV 315 (831)
Q Consensus 242 ----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ 315 (831)
.-..|++...++|.+...-+.+ .+ ..|...|..++. ..+ +.=..+.++.....+ ..++.--..
T Consensus 922 ~~g~~d~eli~vt~~n~l~k~~aryl---v~---r~d~~lW~~vl~---~~n--~~RR~Lidqv~a~aL~e~~~PeeVs~ 990 (1630)
T 1xi4_A 922 ERGQCDLELINVCNENSLFKSLSRYL---VR---RKDPELWGSVLL---ESN--PYRRPLIDQVVQTALSETQDPEEVSV 990 (1630)
T ss_pred cccCCcHHHHHHHhcchhHHHHHHHH---HH---hcCHHHHHHHhc---CCc--HHHHHHHHHHHHhhcccccCHHHhHH
Confidence 0123444444455443322221 11 124444544431 111 111223333222211 224445566
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 003315 316 VIRWFCDQNKLEKAECVLLHMEKQGV--VPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQK 393 (831)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 393 (831)
.++.|...|.+.+|.++++++.-.+- .-+...-+.++....+. +..+..+...+.... + ...+...+...
T Consensus 991 ~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~l 1062 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISN 1062 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhC
Confidence 78888899999999999999884421 12445566677666666 456666655554421 1 33477778889
Q ss_pred CChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHH
Q 003315 394 GMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLF 473 (831)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 473 (831)
|.+++|..+|++... .....+.++ ...+++++|.++.+++. +..+|..+..++...|++++|...|
T Consensus 1063 glyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred CCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999988631 222223332 27788999999988763 5678999999999999999999999
Q ss_pred HHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC
Q 003315 474 KEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN 553 (831)
Q Consensus 474 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 553 (831)
.+. -|...|..++.++.+.|++++|.+.+....+.. +++.....++.+|++.+++++.+.+++ ..+...
T Consensus 1129 iKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~---~~n~ad 1197 (1630)
T 1xi4_A 1129 IKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN---GPNNAH 1197 (1630)
T ss_pred Hhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh---CCCHHH
Confidence 664 377788889999999999999999999888764 333334458889999999887655542 223344
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003315 554 YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQ 633 (831)
Q Consensus 554 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 633 (831)
|..++..|...|++++|..+|..+ ..|..++.++++.|++++|.+.++++ .+..+|..+..+|..
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhh
Confidence 777999999999999999999875 47899999999999999999999887 456889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccccCCCCCC
Q 003315 634 AEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPD-VVTYTVLFDAHSKINLKGSSSS 712 (831)
Q Consensus 634 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~ 712 (831)
.|++..|......+. .++..+..++..|.+.|.+++|+++++..+. +.|. ...|+-+...+++.
T Consensus 1263 ~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy-------- 1327 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKF-------- 1327 (1630)
T ss_pred hhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhC--------
Confidence 999999998776532 3777888999999999999999999988875 3443 33455555555552
Q ss_pred CchhhcccCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhcCChHHHHHHH-------------HHHHHCCCC
Q 003315 713 PDALQCKEDVVDASVFWNEMKEMGIRP------DVISYTVLIAKLCNTQNLEDGITVF-------------NEISDRGLE 773 (831)
Q Consensus 713 ~~~~~~~~~~~~a~~~~~~m~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~~~g~~ 773 (831)
..++..++.++|..-. +++| +...|.-++..|.+.|+++.|...+ ...+. -.
T Consensus 1328 -----~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv 1398 (1630)
T 1xi4_A 1328 -----KPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KV 1398 (1630)
T ss_pred -----CHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--cc
Confidence 3466677777766433 2333 4567999999999999999998432 22222 13
Q ss_pred CCHHHHHHHHHHHHhcC---------------CHHHHHHHHH
Q 003315 774 PDTVTYTALLCGYLAKG---------------DLDRAIALVD 800 (831)
Q Consensus 774 pd~~~~~~l~~~~~~~g---------------~~~~A~~~~~ 800 (831)
.|+.+|...+.-|.... |++++.+++.
T Consensus 1399 ~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1399 ANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred ccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 35777777777777666 6666666665
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-18 Score=181.33 Aligned_cols=320 Identities=10% Similarity=0.005 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003315 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQI 196 (831)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 196 (831)
+..+..++..+...|++++|...+.++++..|. ++.++..++..+...|++++|+..|+++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 63 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-------------------NYIAYYRRATVFLAMGKSKAALPDLTKV 63 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-------------------cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 445555555566666666666666655554332 3345555666666666666666666665
Q ss_pred HHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC---CChhhHHHH------------HHHHHhcCChHHHHH
Q 003315 197 NRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLS---LNEYTYVIV------------IKALCKKGSMQEAVE 261 (831)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~A~~ 261 (831)
++..+. +..++..++.++...|++++|...|++..+.. + .+...+..+ ...+...|++++|++
T Consensus 64 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 141 (359)
T 3ieg_A 64 IALKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAIT 141 (359)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhCCC-cchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 555422 44555555566666666666666666655532 1 122333333 344555566666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 003315 262 VFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGV 341 (831)
Q Consensus 262 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 341 (831)
.++++.+.. +.+..++..+...+...|++++|...++++.+.. |.+..++..++..+...|++++|...|++..+..+
T Consensus 142 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 142 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 665555542 2344455555555555566666666655555543 44555555555555556666666665555555422
Q ss_pred CCCHHHHH------------HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003315 342 VPDVYAYS------------ALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDM 409 (831)
Q Consensus 342 ~p~~~~~~------------~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 409 (831)
. +...+. .+...+.+.|++++|...++++.+.... +...
T Consensus 220 ~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~--------------------------- 270 (359)
T 3ieg_A 220 D-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEY--------------------------- 270 (359)
T ss_dssp T-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHH---------------------------
T ss_pred c-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHH---------------------------
Confidence 2 222221 1133344445555555544444443211 1100
Q ss_pred CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHH
Q 003315 410 GFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYN 489 (831)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 489 (831)
....+..+..++...|++++|...+++..+.. +.+...+..+...+...|++++|...|+++.+..+. +...+.
T Consensus 271 ----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~ 344 (359)
T 3ieg_A 271 ----TVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIRE 344 (359)
T ss_dssp ----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHH
T ss_pred ----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHH
Confidence 01223345566666666666666666665532 224556666666666666666666666666654322 333444
Q ss_pred HHHHH
Q 003315 490 VLAGA 494 (831)
Q Consensus 490 ~l~~~ 494 (831)
.+..+
T Consensus 345 ~l~~~ 349 (359)
T 3ieg_A 345 GLEKA 349 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-18 Score=180.84 Aligned_cols=331 Identities=13% Similarity=0.044 Sum_probs=255.2
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
++..+..++..+...|++++|+..|+++++..+. +..++..++..+...|++++|...|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 3567889999999999999999999999998754 78889999999999999999999999999864 457788999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCC----CHHHHHHH------------HHHHHhcCChhHHHHHHHHHHHCCCCCChhh
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTP----NAFAYSTC------------IEGLCMNGMLDLGYELLLKWEEADIPLSAFA 312 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 312 (831)
.+...|++++|++.|+++.+. .| +...+..+ ...+...|++++|...++++.+.. |.+..+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 156 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAEL 156 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHH
Confidence 999999999999999999976 34 34444444 467778888888888888887764 566777
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 003315 313 YTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQ 392 (831)
Q Consensus 313 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 392 (831)
+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...+++..+.... +...+..+
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~------ 228 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHY------ 228 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHH------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHH------
Confidence 888888888888888888888888776433 6777778888888888888888888887764322 11111110
Q ss_pred cCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHccCChhh
Q 003315 393 KGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDV----VNYTTMICGYCLQGKLGD 468 (831)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~ 468 (831)
..+. .......+...+.+.|++++|...++++.+.... +. ..+..+...+...|++++
T Consensus 229 -----------~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 229 -----------KQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp -----------HHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -----------HHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHH
Confidence 0000 1122234467788999999999999998875322 22 234457788999999999
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003315 469 ALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCM 532 (831)
Q Consensus 469 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 532 (831)
|...+++..+..+. +..++..+...+...|++++|...++++.+.. +.+......+..+...
T Consensus 291 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 291 AIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 99999999887533 67889999999999999999999999999874 4456666666655543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-15 Score=172.92 Aligned_cols=408 Identities=14% Similarity=0.101 Sum_probs=301.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC--CcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGF--VWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
+|.--...+++|+..|.+.+|+++++++...+. ..+....+.++....+. +..+..+..+.+.+ .....+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHH
Confidence 444556889999999999999999999984431 13556777788777777 44555555555432 123447
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKL 326 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 326 (831)
...+...|.+++|..+|++.. -.....+.+ +...+++++|.++.++. .++.+|..++.++.+.|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCH
Confidence 778889999999999999863 122222333 22778899999998864 3578899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 003315 327 EKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEF 406 (831)
Q Consensus 327 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 406 (831)
++|.+.|.+. .|...|..++..+.+.|++++|++.|....+... +......++.+|++.+++++....
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~f---- 1189 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEF---- 1189 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHH----
Confidence 9999999664 3788889999999999999999999998877642 333333588888998888853333
Q ss_pred HHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcc
Q 003315 407 KDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDII 486 (831)
Q Consensus 407 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 486 (831)
.. .++...+..+...|...|++++|..+|... ..|..+...|++.|++++|.+.+++. .+..
T Consensus 1190 I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~ 1251 (1630)
T 1xi4_A 1190 IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTR 1251 (1630)
T ss_pred Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHH
Confidence 22 345667778999999999999999999885 27889999999999999999999876 2668
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHh
Q 003315 487 TYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCK 563 (831)
Q Consensus 487 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~ 563 (831)
+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++.....++.+ |..+...|++
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh
Confidence 888888999999999888876654 34456667788999999999999999999888877665 6667777765
Q ss_pred c--CCHHHHHHHHHHHHhCCC----CCCcccHHHHHHHHHhcCCHHHHHHHH-------------HHHHhCCCCCCHHHH
Q 003315 564 T--GHTKEAFQLFMRLSNQGV----LVKKSSCNKLITNLLILRDNNNALKLF-------------KTMITLNAEPSKSMY 624 (831)
Q Consensus 564 ~--g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~-------------~~~~~~~~~p~~~~~ 624 (831)
. ++..+++++|..-..... --+...|..+...|.+.|+++.|.... +..+. ...+...|
T Consensus 1327 y~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~ely 1404 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELY 1404 (1630)
T ss_pred CCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHH
Confidence 4 456666666654332211 013556888888999999999887322 22221 24567777
Q ss_pred HHHHHHHHhcC
Q 003315 625 DKLIGALCQAE 635 (831)
Q Consensus 625 ~~l~~~~~~~g 635 (831)
...+.-|...+
T Consensus 1405 ykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1405 YRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHhhC
Confidence 77777776444
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-16 Score=171.64 Aligned_cols=352 Identities=9% Similarity=-0.006 Sum_probs=208.7
Q ss_pred CHHHHHHHHHHHHc----CCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHH----cCChh
Q 003315 116 NLCTYAAIVRILCC----CGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVS----VGMFD 187 (831)
Q Consensus 116 ~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 187 (831)
++..+..++..+.. .++.++|...+.+..+.. ++.++..|+..|.. .++++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---------------------~~~a~~~Lg~~y~~g~g~~~~~~ 96 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---------------------YTPAEYVLGLRYMNGEGVPQDYA 96 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------------------CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---------------------CHHHHHHHHHHHHcCCCCCCCHH
Confidence 45555555555555 556666666666554430 23455566666666 66666
Q ss_pred HHHHHHHHHHHcCCCcChhhHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHH
Q 003315 188 EGIDILFQINRRGFVWSICSCNYFMNQLVE----CGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK----KGSMQEA 259 (831)
Q Consensus 188 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 259 (831)
+|+..|+++.+.+ +..++..+...|.. .+++++|...|++..+.+ ++..+..+...|.. .+++++|
T Consensus 97 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A 170 (490)
T 2xm6_A 97 QAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMA 170 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 6666666666543 44455556666655 556666666666665543 44555555555555 5566666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHhHHHH
Q 003315 260 VEVFLEMEKAGVTPNAFAYSTCIEGLCM----NGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCD----QNKLEKAEC 331 (831)
Q Consensus 260 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 331 (831)
++.|++..+.| +...+..+...|.. .+++++|...|++..+.+ ++..+..+...|.. .+++++|.+
T Consensus 171 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~ 244 (490)
T 2xm6_A 171 REWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRV 244 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 66666666543 45555555555555 566666666666666554 34555556666654 566666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-----CChHHHHHH
Q 003315 332 VLLHMEKQGVVPDVYAYSALISGYCK----FGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQK-----GMASATIKQ 402 (831)
Q Consensus 332 ~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~ 402 (831)
.|++..+.| +...+..+...|.. .+++++|+..|++..+.| +...+..+...+... ++.++|+..
T Consensus 245 ~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~ 318 (490)
T 2xm6_A 245 LFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISW 318 (490)
T ss_dssp HHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 666666543 44455555555555 566666666666665543 333444455555544 566666666
Q ss_pred HHHHHHCCCCcCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCChhhHHHHHHH
Q 003315 403 FLEFKDMGFFLNKVCYDVIVDSLCKLG---EVEKAMILFKEMKDRQIVPDVVNYTTMICGYCL----QGKLGDALDLFKE 475 (831)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 475 (831)
|+...+.+ +...+..+...|...| +.++|+++|++..+.+ +...+..+...|.. .+++++|...|++
T Consensus 319 ~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 392 (490)
T 2xm6_A 319 YTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRK 392 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 66655543 3345555666665544 5667777777766542 45566666666666 6677777777777
Q ss_pred HHHcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 003315 476 MKEMGHKPDIITYNVLAGAFAQ----YGAVQKAFDLLNYMKRHG 515 (831)
Q Consensus 476 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 515 (831)
..+.+ +...+..+...|.. .++.++|...+++..+.+
T Consensus 393 A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 393 AAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 76653 34556666666666 677777777777776654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.5e-16 Score=169.54 Aligned_cols=369 Identities=12% Similarity=0.024 Sum_probs=230.3
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHH
Q 003315 223 MALAVYQHLKRLGLSLNEYTYVIVIKALCK----KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCM----NGMLDLG 294 (831)
Q Consensus 223 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a 294 (831)
.+...++...+. .++..+..+...|.. .+++++|++.|++..+.| +...+..|...|.. .+++++|
T Consensus 25 ~~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 25 VNLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CCHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 345556665553 477778888888877 788888888888888764 56677777778877 7888888
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHH
Q 003315 295 YELLLKWEEADIPLSAFAYTVVIRWFCD----QNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCK----FGKINKALL 366 (831)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~ 366 (831)
...|++..+.+ ++..+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .+++++|++
T Consensus 99 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 99 VIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 88888888765 56677778888877 778888888888887764 56677777777776 677788888
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 367 LHHEMTSKGIKTNCGVLSVILKGLCQ----KGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMK 442 (831)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (831)
.|++..+.| +...+..+...|.. .++.++|++.|+...+.+ +...+..+...|..-
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g-------------- 232 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFG-------------- 232 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT--------------
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC--------------
Confidence 877777653 34444444444444 445555555555544433 233344444444430
Q ss_pred hCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCC
Q 003315 443 DRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQ----YGAVQKAFDLLNYMKRHGLEP 518 (831)
Q Consensus 443 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~ 518 (831)
....+++++|...|++..+.+ +...+..+...+.. .++.++|...+++..+.+
T Consensus 233 -----------------~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--- 289 (490)
T 2xm6_A 233 -----------------IGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--- 289 (490)
T ss_dssp -----------------SSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---
T ss_pred -----------------CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---
Confidence 000344444444444444332 22233333334433 445555555555554432
Q ss_pred CHHHHHHHHHHHHcC-----CCHHHHHHHHHHhhhCCCC-ChHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCcccH
Q 003315 519 NFVTHNMIIEGLCMG-----GRVEEAEAFLDGLKGKCLE-NYSAMINGYCKTG---HTKEAFQLFMRLSNQGVLVKKSSC 589 (831)
Q Consensus 519 ~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~ 589 (831)
+...+..+...|... ++.++|...+++..+.+.. .+..++..|...| ++++|+++|++..+.+ ++..+
T Consensus 290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 366 (490)
T 2xm6_A 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQ 366 (490)
T ss_dssp CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHH
Confidence 223333444444443 5555555555554443322 2444555555444 5667777777776663 56677
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 003315 590 NKLITNLLI----LRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQ----AEEMEQAQLVFNVLVDKGL 652 (831)
Q Consensus 590 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 652 (831)
..+...+.. .+++++|...++++.+.+ +...+..+..+|.+ .++.++|...|+++.+.+.
T Consensus 367 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 367 FNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 777777777 778888888888887754 46677778888877 7888888888888887754
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-17 Score=171.01 Aligned_cols=285 Identities=10% Similarity=-0.004 Sum_probs=141.1
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003315 204 SICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIE 283 (831)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 283 (831)
+...+..++..+...|++++|..+|+++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 33444445555555555555555555555432 2333444444455555555555555555555432 223444445555
Q ss_pred HHHhcC-ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003315 284 GLCMNG-MLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKIN 362 (831)
Q Consensus 284 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 362 (831)
.+...| ++++|...++++.+.+ |.+...+..++..+...|++++|.+.++++.+..+. +...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 555555 5555555555555443 334445555555555555555555555555554322 2334444555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 363 KALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMK 442 (831)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (831)
+|...+++..+.... +...+..+...+...|++++|...+++..
T Consensus 177 ~A~~~~~~al~~~~~------------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 177 LAERFFSQALSIAPE------------------------------------DPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHHHHHHHHTTCTT------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC------------------------------------ChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 555555555543211 22333334444444444444444444433
Q ss_pred hCC--------CCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003315 443 DRQ--------IVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRH 514 (831)
Q Consensus 443 ~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 514 (831)
+.. .+.....+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|.+.++++.+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 210 0122345555555566666666666666665554322 4455555566666666666666666665554
Q ss_pred CCCCCHHHHHHHHHHH
Q 003315 515 GLEPNFVTHNMIIEGL 530 (831)
Q Consensus 515 ~~~~~~~~~~~l~~~~ 530 (831)
. +.+...+..+..++
T Consensus 300 ~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 300 R-RDDTFSVTMLGHCI 314 (330)
T ss_dssp C-SCCHHHHHHHHHHH
T ss_pred C-CCchHHHHHHHHHH
Confidence 2 33444555555444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-16 Score=174.14 Aligned_cols=428 Identities=11% Similarity=0.014 Sum_probs=302.3
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 003315 228 YQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIP 307 (831)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 307 (831)
|++.++.. |-+...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++++...
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 55555543 457889999998 478999999999999999863 4567789999999999999999999999999874
Q ss_pred CChhhHHHHHHHH-HhcCCHhHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHHHh---------cCChHHHHHHHHHH
Q 003315 308 LSAFAYTVVIRWF-CDQNKLEKAEC----VLLHMEKQ-GVVP-DVYAYSALISGYCK---------FGKINKALLLHHEM 371 (831)
Q Consensus 308 ~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~~~-~~~p-~~~~~~~li~~~~~---------~~~~~~A~~~~~~~ 371 (831)
|+...|..++... ...|++++|.+ +|+..... |..| +...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 4777888777644 35677777765 77766543 4443 56778877776654 68899999999998
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH------hCC
Q 003315 372 TSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMK------DRQ 445 (831)
Q Consensus 372 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~ 445 (831)
++.........+..........+ ..+...++. .+.++++.|..+++++. +..
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~--------------------~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGIN--------------------IHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHC--------------------HHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HhchhhhHHHHHHHHHHHHHhhc--------------------hhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 87311111122222111110011 001111111 12345666766666522 211
Q ss_pred ---CCCC--------hhhHHHHHHHHHcc----CCh----hhHHHHHHHHHHcCCCCCcchHHHHHHHHHh-------cC
Q 003315 446 ---IVPD--------VVNYTTMICGYCLQ----GKL----GDALDLFKEMKEMGHKPDIITYNVLAGAFAQ-------YG 499 (831)
Q Consensus 446 ---~~~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g 499 (831)
++|+ ...|...+...... ++. +.+..+|+++....+. +...|...+..+.+ .|
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhcc
Confidence 2333 23454444332221 222 3677889988876433 66778777777765 68
Q ss_pred CHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC----hHHHHHHHHhcCCHH
Q 003315 500 AVQ-------KAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN----YSAMINGYCKTGHTK 568 (831)
Q Consensus 500 ~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~ 568 (831)
+++ +|..++++.++.-.+.+...+..++..+.+.|++++|..+|+++...+|.. |..++..+.+.|+++
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 373 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIK 373 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHH
Confidence 876 899999999873235568888889999999999999999999999887754 666777778899999
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003315 569 EAFQLFMRLSNQGVLVKKSSCNKLITN-LLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVL 647 (831)
Q Consensus 569 ~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 647 (831)
+|.++|+++.+..+. +...+...+.. +...|+.++|..+|+++++.. +.+...|..++..+.+.|+.++|+.+|+++
T Consensus 374 ~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 374 SGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 999999999987432 33333333322 335899999999999998864 446888999999999999999999999999
Q ss_pred HHCCCC-C--CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003315 648 VDKGLT-P--HLVTYTMMIHGYCKINCLREARDVFNDMKQR 685 (831)
Q Consensus 648 ~~~~~~-p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 685 (831)
+..+.. | ....|...+....+.|+.+.+..+++++.+.
T Consensus 452 l~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 452 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 987432 2 2447888898888999999999999999874
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-17 Score=171.20 Aligned_cols=293 Identities=11% Similarity=0.005 Sum_probs=217.7
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
++..+..++..+...|++++|+..|+++++.++. +...+..++..+...|++++|...++++.+.. +.+...|..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 3446778899999999999999999999988754 67778888899999999999999999999864 457788999999
Q ss_pred HHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHh
Q 003315 249 ALCKKG-SMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLE 327 (831)
Q Consensus 249 ~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 327 (831)
.+...| ++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 999999 9999999999999864 4457789999999999999999999999999875 556778888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 328 KAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFK 407 (831)
Q Consensus 328 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 407 (831)
+|.+.++++.+..+. +...+..+...+.+.|++++|...+++..+.......
T Consensus 177 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------------------- 228 (330)
T 3hym_B 177 LAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN--------------------------- 228 (330)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC---------------------------
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc---------------------------
Confidence 999999999987544 7888999999999999999999999998763210000
Q ss_pred HCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcch
Q 003315 408 DMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIIT 487 (831)
Q Consensus 408 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 487 (831)
....+....++..+..++...|++++|...+++..+... .+...+..+...+...|++++|.+.++++.+..+. +...
T Consensus 229 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~ 306 (330)
T 3hym_B 229 EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFS 306 (330)
T ss_dssp SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHH
T ss_pred cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHH
Confidence 000011233444455555555555555555555544321 13444555555555555555555555555543221 3334
Q ss_pred HHHHHHHH
Q 003315 488 YNVLAGAF 495 (831)
Q Consensus 488 ~~~l~~~~ 495 (831)
+..+..++
T Consensus 307 ~~~l~~~~ 314 (330)
T 3hym_B 307 VTMLGHCI 314 (330)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.8e-16 Score=172.72 Aligned_cols=215 Identities=11% Similarity=0.070 Sum_probs=141.6
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHc-------cCChh-------hHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 003315 433 KAMILFKEMKDRQIVPDVVNYTTMICGYCL-------QGKLG-------DALDLFKEMKEMGHKPDIITYNVLAGAFAQY 498 (831)
Q Consensus 433 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 498 (831)
.+..+|++..... +.+...|..++..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 5556666655431 2255566666665554 56665 6777777776521122455666667777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHH---HH-HHhcCCHHHHHHH
Q 003315 499 GAVQKAFDLLNYMKRHGLEPN-FVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMI---NG-YCKTGHTKEAFQL 573 (831)
Q Consensus 499 g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~---~~-~~~~g~~~~A~~~ 573 (831)
|++++|..+++++++.. +.+ ..++...+..+.+.|++++|.++|++..+..+..+...+ .. +...|++++|..+
T Consensus 335 g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp TCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHH
Confidence 77777777777777642 222 246666666667777777777777777766555432211 11 2357788888888
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003315 574 FMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNA-EP--SKSMYDKLIGALCQAEEMEQAQLVFNVLVDK 650 (831)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 650 (831)
|++..+..+. ++..+..++..+.+.|+.++|..+|++++..+. .| ...+|...+......|+.+.+..+++++.+.
T Consensus 414 ~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 414 FELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8877776543 567777788888888888888888888887642 22 2457777788788889999999888888875
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.6e-17 Score=170.74 Aligned_cols=259 Identities=10% Similarity=-0.020 Sum_probs=163.5
Q ss_pred HHHHcCChhHHHH-HHHHHHHcCCC---cChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003315 179 AYVSVGMFDEGID-ILFQINRRGFV---WSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG 254 (831)
Q Consensus 179 ~~~~~~~~~~A~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (831)
++...|++++|+. .|.++.+..+. .+...+..++..+.+.|++++|...|+++++.. +.+...+..+...+.+.|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3455688888888 88876655432 135567888888999999999999999988764 457778888889999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHH---------------HHH
Q 003315 255 SMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVV---------------IRW 319 (831)
Q Consensus 255 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---------------~~~ 319 (831)
++++|++.|+++.+.. +.+..++..+...+...|++++|...++++.+.. |.+...+..+ +..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 9999999999988764 4567788888889999999999999999988875 3333333211 222
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHH
Q 003315 320 FCDQNKLEKAECVLLHMEKQGVVP-DVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASA 398 (831)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 398 (831)
+...|++++|...|+++.+..+.. +..++..+...|.+.|++++|+..++++...... +...+..+...+...|++++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHH
Confidence 336777777777777777653321 4666777777777777777777777777654221 33444445555555555555
Q ss_pred HHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 399 TIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMK 442 (831)
Q Consensus 399 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (831)
|+..++.+.+..+ .+...+..+..++.+.|++++|...|+++.
T Consensus 270 A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 270 AVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555444321 133444445555555555555555554443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.6e-17 Score=172.23 Aligned_cols=257 Identities=9% Similarity=-0.091 Sum_probs=160.2
Q ss_pred ccCChhHHHH-HHHHHHhCCC---CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcch
Q 003315 94 LRKEPKIALS-FFEQLKRSGF---SHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLL 169 (831)
Q Consensus 94 ~~~~~~~A~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (831)
..|+++.|++ .|+.+..... ..+...+..++..+...|++++|...+.++++..|. +
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-------------------~ 97 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-------------------H 97 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-------------------C
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------------------C
Confidence 3467777777 7776543211 113455667777777777888887777777766433 4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHH----
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVI---- 245 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---- 245 (831)
..++..++.+|...|++++|+..|+++++.++. +..++..++.++...|++++|...|+++.+.. +.+...+..
T Consensus 98 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 175 (368)
T 1fch_A 98 MEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG 175 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC-----
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 456777777777788888888888777776633 66677777777777788888888777777653 222222221
Q ss_pred -----------HHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhH
Q 003315 246 -----------VIKALCKKGSMQEAVEVFLEMEKAGVT-PNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAY 313 (831)
Q Consensus 246 -----------l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 313 (831)
.+..+...|++++|+..|+++.+.... ++..++..+...+...|++++|...++++.+.. |.+..++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 254 (368)
T 1fch_A 176 AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLW 254 (368)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHH
Confidence 122233667777777777777665311 135666667777777777777777777766653 4456666
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 314 TVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTS 373 (831)
Q Consensus 314 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 373 (831)
..++..+...|++++|...|+++.+..+. +...+..+..+|.+.|++++|...|+++.+
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777777777776665322 556666677777777777777777766654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.3e-16 Score=168.82 Aligned_cols=329 Identities=11% Similarity=-0.066 Sum_probs=202.2
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHc--------CCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcC-----
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRR--------GFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLG----- 235 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----- 235 (831)
....|+.|+..+...|++++|++.|+++++. ..+....+|+.+..+|...|++++|...|++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4568899999999999999999999987653 112245578889999999999999999998876421
Q ss_pred --CCCChhhHHHHHHHHHhc--CChHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCChhHHHHHHHHHHHCCCCC
Q 003315 236 --LSLNEYTYVIVIKALCKK--GSMQEAVEVFLEMEKAGVTPNAFAYSTCIEG---LCMNGMLDLGYELLLKWEEADIPL 308 (831)
Q Consensus 236 --~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~ 308 (831)
......++..+..++.+. +++++|++.|+++.+.. +.+...+..+..+ +...++.++|++.+++.++.+ |.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 012345666666666554 46899999999998763 2344455554444 445678888999998888875 55
Q ss_pred ChhhHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHH
Q 003315 309 SAFAYTVVIRWFCD----QNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLS 384 (831)
Q Consensus 309 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 384 (831)
+..++..+...+.. .|++++|.+.+++.....+. +...+..+...|.+.|++++|+..+++..+..+. +..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence 66777666655544 46778899999888876544 6778888888999999999999999888775322 222222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 003315 385 VILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQG 464 (831)
Q Consensus 385 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 464 (831)
.+..+|...+... .... ...........+
T Consensus 286 -----------------------------------~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~ 314 (472)
T 4g1t_A 286 -----------------------------------QIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLE 314 (472)
T ss_dssp -----------------------------------HHHHHHHHHHHHH---------HHC-------------CHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHh
Confidence 2222221110000 0000 000000011112
Q ss_pred ChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHcCCCHHHHHH
Q 003315 465 KLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFV--THNMIIE-GLCMGGRVEEAEA 541 (831)
Q Consensus 465 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~ 541 (831)
..++|...+++..+..+. +..++..+...+...|++++|.+.|++.++....+... .+..+.. .....|+.++|+.
T Consensus 315 ~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~ 393 (472)
T 4g1t_A 315 LIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH 393 (472)
T ss_dssp HHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred hHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 345666666666655432 55566667777777777777777777776654322211 1122211 1234556666666
Q ss_pred HHHHhhhCCCCC
Q 003315 542 FLDGLKGKCLEN 553 (831)
Q Consensus 542 ~~~~~~~~~~~~ 553 (831)
.+++.....|.+
T Consensus 394 ~y~kal~i~~~~ 405 (472)
T 4g1t_A 394 HFIEGVKINQKS 405 (472)
T ss_dssp HHHHHHHSCCCC
T ss_pred HHHHHHhcCccc
Confidence 666555555544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.4e-17 Score=168.70 Aligned_cols=233 Identities=11% Similarity=-0.076 Sum_probs=176.6
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
+...+..++..+.+.|++++|+..|+++++..+. +..++..++.++...|++++|+..|++..+.. +.+..++..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3446788999999999999999999999988754 78889999999999999999999999998864 456889999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCH-----------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--ChhhHHH
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNA-----------FAYSTCIEGLCMNGMLDLGYELLLKWEEADIPL--SAFAYTV 315 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ 315 (831)
.|...|++++|++.|+++.+.. |+. ..+..+...+...|++++|...++++.+.+ |. +..++..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~ 218 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTG 218 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHH
Confidence 9999999999999999998753 332 222334677888888888888888888874 44 6778888
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 003315 316 VIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGM 395 (831)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 395 (831)
++..+...|++++|.+.|+++.+..+. +..+|..+..+|.+.|++++|+..|++.++.... +..++..+...+...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCC
Confidence 888888888888888888888876443 6778888888888888888888888888775322 34455555555555555
Q ss_pred hHHHHHHHHHHHH
Q 003315 396 ASATIKQFLEFKD 408 (831)
Q Consensus 396 ~~~a~~~~~~~~~ 408 (831)
+++|...|+++.+
T Consensus 297 ~~~A~~~~~~al~ 309 (365)
T 4eqf_A 297 YREAVSNFLTALS 309 (365)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.6e-17 Score=168.63 Aligned_cols=236 Identities=7% Similarity=-0.105 Sum_probs=190.4
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
+...+...+..+...|++++|...+.++++..|. +..++..++..|...|++++|+..|++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 124 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-------------------DAEAWQFLGITQAENENEQAAIVALQR 124 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-------------------CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455778888888899999999999888887543 456788899999999999999999999
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhH----------HHHHHHHHhcCChHHHHHHHHH
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTY----------VIVIKALCKKGSMQEAVEVFLE 265 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~g~~~~A~~~~~~ 265 (831)
+++.++. +..++..++.++...|++++|...|+++.+.. +.+...+ ..+...+.+.|++++|++.|++
T Consensus 125 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (365)
T 4eqf_A 125 CLELQPN-NLKALMALAVSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLE 202 (365)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHH
T ss_pred HHhcCCC-CHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 8887644 67888889999999999999999999888753 1222223 3447788899999999999999
Q ss_pred HHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 003315 266 MEKAGVT-PNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPD 344 (831)
Q Consensus 266 m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 344 (831)
+.+.... ++..++..+...+...|++++|...++++.+.. |.+..++..++..|...|++++|...|+++.+..+. +
T Consensus 203 al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~ 280 (365)
T 4eqf_A 203 AAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-F 280 (365)
T ss_dssp HHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-c
Confidence 9886411 157889999999999999999999999999875 667889999999999999999999999999887443 6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 345 VYAYSALISGYCKFGKINKALLLHHEMTSK 374 (831)
Q Consensus 345 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 374 (831)
..++..+..+|.+.|++++|...|+++++.
T Consensus 281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 281 IRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 888999999999999999999999998764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-16 Score=163.28 Aligned_cols=233 Identities=10% Similarity=-0.057 Sum_probs=169.3
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
+...+..++..+...|++++|+..|+++.+..+. +..++..++.++...|++++|...|+++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 4456778899999999999999999999988754 78888899999999999999999999998864 457788999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHhcCChhHHHHHHHHHHHCCCCCChhhH
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTC--------------IE-GLCMNGMLDLGYELLLKWEEADIPLSAFAY 313 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 313 (831)
.+...|++++|++.++++.+.. +.+...+..+ .. .+...|++++|...++++.+.. +.+..++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 9999999999999999998863 2222333333 22 3666777788888888877764 5567777
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 003315 314 TVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQK 393 (831)
Q Consensus 314 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 393 (831)
..++..+...|++++|.+.++++.+..+. +...+..+...+...|++++|...++++.+.... +...+..+...+...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHh
Confidence 77788888888888888888877766433 5667777777777778888887777777664321 333444444444444
Q ss_pred CChHHHHHHHHHHH
Q 003315 394 GMASATIKQFLEFK 407 (831)
Q Consensus 394 ~~~~~a~~~~~~~~ 407 (831)
|++++|.+.++.+.
T Consensus 254 g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 254 SQYDLAAKQLVRAI 267 (327)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 44444444444443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-16 Score=158.71 Aligned_cols=345 Identities=12% Similarity=0.085 Sum_probs=129.2
Q ss_pred HcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 003315 182 SVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVE 261 (831)
Q Consensus 182 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (831)
+.|++++|.++++++. +..+|..++.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|++
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4566677777766651 223566677777777777777777643 2455566666766667777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 003315 262 VFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGV 341 (831)
Q Consensus 262 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 341 (831)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 66655543 3445566666777777777766665553 245556777777777777777777777655
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHH
Q 003315 342 VPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVI 421 (831)
Q Consensus 342 ~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 421 (831)
..|..++.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|......+ ...+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHH
Confidence 24666777777777777777777666 14566666777777777777664433321 1223334457
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc--CChhhHHHHHHHHHHcCCCC------CcchHHHHHH
Q 003315 422 VDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQ--GKLGDALDLFKEMKEMGHKP------DIITYNVLAG 493 (831)
Q Consensus 422 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~ 493 (831)
+..|.+.|.+++|..+++...... +.....|+-+.-.|++- ++..+.++.|.. ..+++| +...|.-++.
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHH
Confidence 777778888888888887776543 33555666666666543 233334443331 111222 4566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhcCCHHHHHHH
Q 003315 494 AFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQL 573 (831)
Q Consensus 494 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 573 (831)
.|...++++.|... |.++ +++..-...+.....+..+.+--.+...=.....|...+.|+.++...=+..++..+
T Consensus 291 ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld~~r~v~~ 365 (449)
T 1b89_A 291 LYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNY 365 (449)
T ss_dssp HHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHH
T ss_pred HHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCcHHHHHH
Confidence 77777777776653 3332 233222233333334444444333333333344444555555555554455555554
Q ss_pred HH
Q 003315 574 FM 575 (831)
Q Consensus 574 ~~ 575 (831)
|+
T Consensus 366 ~~ 367 (449)
T 1b89_A 366 FS 367 (449)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.2e-16 Score=160.94 Aligned_cols=264 Identities=5% Similarity=-0.142 Sum_probs=190.6
Q ss_pred ChHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHh
Q 003315 83 NTREVVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALC 162 (831)
Q Consensus 83 ~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (831)
......+..+...|+++.|+.+|+.+.+.. +.++..+..++.++...|++++|...+.++++..|.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------- 87 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK------------- 87 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-------------
Confidence 444556677778899999999999987553 337888888999999999999999999988887443
Q ss_pred cCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHH--------------HH-HHHHcCChhHHHHH
Q 003315 163 GEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYF--------------MN-QLVECGKVDMALAV 227 (831)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~A~~~ 227 (831)
+..++..++..|...|++++|+..++++.+..+. +...+..+ .. .+...|++++|...
T Consensus 88 ------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 88 ------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 4567888899999999999999999998887644 33334333 22 35566777788888
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 003315 228 YQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIP 307 (831)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 307 (831)
++++.+.. +.+...+..+...+.+.|++++|++.++++.+.. +.+..++..+...+...|++++|...++++.+.. |
T Consensus 161 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~ 237 (327)
T 3cv0_A 161 LHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-P 237 (327)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 87777654 3466677777777777888888888887777653 3456677777777777777777777777777664 4
Q ss_pred CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003315 308 LSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVP-----------DVYAYSALISGYCKFGKINKALLLHHE 370 (831)
Q Consensus 308 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~li~~~~~~~~~~~A~~~~~~ 370 (831)
.+..++..++..+...|++++|.+.|+++.+..+.. +...|..+..++.+.|++++|...+++
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 566777777777777777777777777776643221 355667777777777777777776654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.8e-16 Score=157.84 Aligned_cols=282 Identities=12% Similarity=0.082 Sum_probs=86.2
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 003315 216 VECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGY 295 (831)
Q Consensus 216 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 295 (831)
-+.|+.++|.++++++ +++.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 3566777777777775 23347777888888888888888877542 45567777777777777777777
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003315 296 ELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKG 375 (831)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 375 (831)
.+++..++. .+++.+.+.++.+|.+.|++++++++++ .|+..+|..++..|...|++++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 766665553 3345666777777777777777766663 245567777777777777777777777654
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 003315 376 IKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTT 455 (831)
Q Consensus 376 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 455 (831)
..| ..++.++.+.|++++|.+.++++. ++.+|..
T Consensus 149 -----~n~-----------------------------------~~LA~~L~~Lg~yq~AVea~~KA~------~~~~Wk~ 182 (449)
T 1b89_A 149 -----SNF-----------------------------------GRLASTLVHLGEYQAAVDGARKAN------STRTWKE 182 (449)
T ss_dssp -----TCH-----------------------------------HHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHH
T ss_pred -----hhH-----------------------------------HHHHHHHHHhccHHHHHHHHHHcC------CchhHHH
Confidence 134 445555555555555555555441 4445555
Q ss_pred HHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC--
Q 003315 456 MICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMG-- 533 (831)
Q Consensus 456 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 533 (831)
++.+|+..|+++.|......+. ..+.....++..|.+.|++++|..+++..+... +-....++.+...|++-
T Consensus 183 v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p 256 (449)
T 1b89_A 183 VCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP 256 (449)
T ss_dssp HHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCH
Confidence 5555555555555533332211 122223334555555555555555555555433 33344444444444432
Q ss_pred CCHHHHHHHHHHhhh--------CCCCChHHHHHHHHhcCCHHHHHHHH
Q 003315 534 GRVEEAEAFLDGLKG--------KCLENYSAMINGYCKTGHTKEAFQLF 574 (831)
Q Consensus 534 g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~ 574 (831)
++..+..+.|..-.. ..+..|..++..|.+.++++.|....
T Consensus 257 ~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 257 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 233333333322111 13444777777777777777776643
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=7e-15 Score=160.45 Aligned_cols=389 Identities=12% Similarity=-0.042 Sum_probs=227.8
Q ss_pred ChHHHHHHHHhccCChhHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhH
Q 003315 83 NTREVVEKLYSLRKEPKIALSFFEQLKR--------SGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEA 154 (831)
Q Consensus 83 ~~~~~~~~l~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 154 (831)
+....++.++...|+++.|++.|+++.+ ...+....+|..++.++...|++++|...+.++++..+.
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~----- 126 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK----- 126 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh-----
Confidence 3445677888889999999999998752 112335778999999999999999999999887765321
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHc--CChhHHHHHHHHHHHcCCCcChhhHHHHHHH---HHHcCChhHHHHHHH
Q 003315 155 TDLIEALCGEGSTLLTRLSDAMIKAYVSV--GMFDEGIDILFQINRRGFVWSICSCNYFMNQ---LVECGKVDMALAVYQ 229 (831)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~~ 229 (831)
.........+.++...+.++... +++++|+..|+++++.++. ++..+..+..+ +...++.++|++.|+
T Consensus 127 ------~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~ 199 (472)
T 4g1t_A 127 ------FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLR 199 (472)
T ss_dssp ------SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHH
T ss_pred ------cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 11111223456677777666654 5699999999999998754 66666666655 345678889999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003315 230 HLKRLGLSLNEYTYVIVIKALCK----KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEAD 305 (831)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (831)
+.++.. +.+...+..+...+.. .|++++|.+.+++..+.. +.+..++..+...|...|++++|...++++.+..
T Consensus 200 ~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 277 (472)
T 4g1t_A 200 QAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI 277 (472)
T ss_dssp HHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC
Confidence 988764 4456666666655544 467889999999988764 4567788899999999999999999999999875
Q ss_pred CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 003315 306 IPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSV 385 (831)
Q Consensus 306 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 385 (831)
|.+..++..+...|...+....+ .. ...........+.++.|...+++..+.+.. +...+..
T Consensus 278 -p~~~~~~~~lg~~y~~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 339 (472)
T 4g1t_A 278 -PNNAYLHCQIGCCYRAKVFQVMN---------LR-------ENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSI 339 (472)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHH
T ss_pred -CChHHHHHHHHHHHHHHHHHhhh---------HH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhh
Confidence 66777888777766432111000 00 000000000111234444444444433211 2233444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCH--hhHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 003315 386 ILKGLCQKGMASATIKQFLEFKDMGFFLNK--VCYDVIVD-SLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCL 462 (831)
Q Consensus 386 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 462 (831)
+...+...|++++|+..|++.......+.. ..+..+.. .+...|+.++|+..|++..+. .|+.....
T Consensus 340 lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~-------- 409 (472)
T 4g1t_A 340 LASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE-------- 409 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH--------
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH--------
Confidence 444555555555555555554443322211 11222222 223556677777777666653 22322111
Q ss_pred cCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003315 463 QGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHG 515 (831)
Q Consensus 463 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 515 (831)
+....+.+++++....++ .+..+|..+..++...|++++|++.+++.++.+
T Consensus 410 -~~~~~l~~~~~~~l~~~p-~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 410 -KMKDKLQKIAKMRLSKNG-ADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp -HHHHHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC-------------
T ss_pred -HHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 112333445555555443 256677777777777777777777777777643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.6e-15 Score=149.74 Aligned_cols=248 Identities=11% Similarity=-0.019 Sum_probs=155.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHH
Q 003315 95 RKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSD 174 (831)
Q Consensus 95 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (831)
.|+++.|+..++.+...+.....+....+++.+...|+++.|...+.. . .++...++.
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-------------------~~~~~~a~~ 69 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-------------------SAPELQAVR 69 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-------------------SCHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-------------------CChhHHHHH
Confidence 467777777766544331111123444556777777777766654322 0 122445666
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCC-CcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGF-VWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKK 253 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (831)
.++..+...++.++|+..+++++..+. +.+...+..+..++...|++++|++.+++ +.+...+..++..+.+.
T Consensus 70 ~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~ 143 (291)
T 3mkr_A 70 MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKL 143 (291)
T ss_dssp HHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHC
Confidence 777777777777777777777766542 22455566666777777777777777765 35666777777777777
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHH
Q 003315 254 GSMQEAVEVFLEMEKAGVTPNAFAY---STCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAE 330 (831)
Q Consensus 254 g~~~~A~~~~~~m~~~~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 330 (831)
|++++|.+.|+++.+. .|+.... ...+..+...|++++|..+|+++.+.. |.++.+++.++.++.+.|++++|+
T Consensus 144 g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~ 220 (291)
T 3mkr_A 144 DRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAE 220 (291)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777765 2443211 112233344567777777777777663 566777777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHhC
Q 003315 331 CVLLHMEKQGVVPDVYAYSALISGYCKFGKINK-ALLLHHEMTSK 374 (831)
Q Consensus 331 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~-A~~~~~~~~~~ 374 (831)
..|+++.+..+. +..++..++..+...|+.++ +.++++++.+.
T Consensus 221 ~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 221 GVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 777777765433 66667777777777777654 45666666654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.6e-15 Score=148.32 Aligned_cols=253 Identities=13% Similarity=0.062 Sum_probs=154.8
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH
Q 003315 178 KAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQ 257 (831)
Q Consensus 178 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (831)
+-....|++..|+..++++....+.........+.++|...|+++.|+..++. . .+|+..++..+...+...|+.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 34456778888888777655543332234445567777888888777765543 1 2456667777777777777788
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 003315 258 EAVEVFLEMEKAGVTP-NAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHM 336 (831)
Q Consensus 258 ~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 336 (831)
+|++.++++...+..| +...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888888777665434 344555666777777777777777766 456677777777777777777777777777
Q ss_pred HHCCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc
Q 003315 337 EKQGVVPDVYAY---SALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFL 413 (831)
Q Consensus 337 ~~~~~~p~~~~~---~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 413 (831)
.+.. |+.... ...+..+...|++++|..+|+++.+... .
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p------------------------------------~ 198 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS------------------------------------P 198 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC------------------------------------C
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC------------------------------------C
Confidence 7653 332211 1223334445667777777777666422 2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhh-HHHHHHHHHHc
Q 003315 414 NKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGD-ALDLFKEMKEM 479 (831)
Q Consensus 414 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~ 479 (831)
+...++.+..++.+.|++++|...|++...... -+..++..++..+...|+.++ +.++++++.+.
T Consensus 199 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 199 TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 444555555555555666666666655544322 244455555555555555543 34555555554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-16 Score=174.38 Aligned_cols=115 Identities=12% Similarity=0.143 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHH
Q 003315 657 VTYTMMIHGYCKINCLREARDVFNDMKQ---RGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMK 733 (831)
Q Consensus 657 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 733 (831)
.+||+||++||+.|++++|.++|++|.+ .|+.||.+|||+||+++++ .|..++|.++|++|.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck---------------~G~~~eA~~Lf~eM~ 192 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR---------------QGAFKELVYVLFMVK 192 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHH---------------HTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHh---------------CCCHHHHHHHHHHHH
Confidence 3455555555555555555555544432 2445555555555555544 333555555555555
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003315 734 EMGIRPDVISYTVLIAKLCNTQNL-EDGITVFNEISDRGLEPDTVTYTALLCGY 786 (831)
Q Consensus 734 ~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~pd~~~~~~l~~~~ 786 (831)
+.|+.||..|||++|.++|+.|+. ++|.++|++|.+.|+.||..+|++++.++
T Consensus 193 ~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 555555555555555555555543 45555555555555555555555555433
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.4e-15 Score=141.67 Aligned_cols=197 Identities=13% Similarity=0.037 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA 249 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (831)
+.++..++..+.+.|++++|+..|+++++.++. +..++..+..++.+.|++++|+..|++.++.. |.+...+..+...
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 345555666666666666666666666655533 55555666666666666666666666655543 3344555556666
Q ss_pred HHhc-----------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 003315 250 LCKK-----------GSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIR 318 (831)
Q Consensus 250 ~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 318 (831)
+.+. |++++|+..|++..+.. +.+...+..+..++...|++++|+..|++.++.+ .++..+..+..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 6666 66666666666666542 2345556666666666666666666666666655 45666666666
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 319 WFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMT 372 (831)
Q Consensus 319 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 372 (831)
.+...|++++|...|++..+..+. +...+..+..++.+.|++++|+..+++..
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 666667777777777666665433 55666666666666777777766666543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.8e-15 Score=140.57 Aligned_cols=201 Identities=17% Similarity=0.070 Sum_probs=165.3
Q ss_pred CcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003315 202 VWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTC 281 (831)
Q Consensus 202 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 281 (831)
+++...+..+...+.+.|++++|...|++.++.. |.++..+..+...+.+.|++++|+..|++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3567788899999999999999999999999865 5678899999999999999999999999999874 4467788999
Q ss_pred HHHHHhc-----------CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHH
Q 003315 282 IEGLCMN-----------GMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSA 350 (831)
Q Consensus 282 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 350 (831)
..++... |++++|...+++.++.+ |.+...+..+...+...|++++|...|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999999 99999999999999986 6678999999999999999999999999999987 58899999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003315 351 LISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKD 408 (831)
Q Consensus 351 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 408 (831)
+..+|...|++++|+..|++.++..+. +...+..+...+...|+.++|+..+++...
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 999999999999999999999986433 567788888999999999999999987654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.7e-15 Score=156.85 Aligned_cols=280 Identities=12% Similarity=0.029 Sum_probs=161.8
Q ss_pred HHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh---hhHHHHHHHHHHhcCCCchhHHHHHHHHhcC
Q 003315 88 VEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQ---KKLESMLLELVRKKTDANFEATDLIEALCGE 164 (831)
Q Consensus 88 ~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (831)
+...+..+|+++.|+..|+.+.+.| ++..+..++.++...|.. ++|...|++.++.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~------------------ 67 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT------------------ 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC------------------
Confidence 4566667789999999999888664 445566677777777777 7888887776644
Q ss_pred CCcchHHHHHHHHHHHHHcC-----ChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhH---HHHHHHHHHhcCC
Q 003315 165 GSTLLTRLSDAMIKAYVSVG-----MFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDM---ALAVYQHLKRLGL 236 (831)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~~ 236 (831)
++.++..++..+...+ ++++|+..|+++.+.|. ..++..+...|...+..++ +.+.+......|
T Consensus 68 ----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g- 139 (452)
T 3e4b_A 68 ----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG- 139 (452)
T ss_dssp -------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT-
T ss_pred ----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC-
Confidence 2345667777555555 77889999998888663 3367778888877665443 444444444433
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCChhhH
Q 003315 237 SLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNG---MLDLGYELLLKWEEADIPLSAFAY 313 (831)
Q Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 313 (831)
++..+..+...|...+.++++....+...+.-...+...+..+...|...| +.++|+..|++..+.+ +++...+
T Consensus 140 --~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~ 216 (452)
T 3e4b_A 140 --YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRV 216 (452)
T ss_dssp --CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHH
T ss_pred --CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHH
Confidence 456677777778777755555444333322111223336777777787788 7888888888888876 5555555
Q ss_pred HHHHHHHHhc----CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 003315 314 TVVIRWFCDQ----NKLEKAECVLLHMEKQGVVPDVYAYSALISG-Y--CKFGKINKALLLHHEMTSKGIKTNCGVLSVI 386 (831)
Q Consensus 314 ~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 386 (831)
..+...|... +++++|.+.|++.. .| +...+..|... + ...+++++|+..|++..+.| +......+
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~L 289 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLL 289 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 6677776554 67888888888877 32 45556666665 3 35677788888887777665 33344444
Q ss_pred HHHHHhcC-----ChHHHHHHHHHHH
Q 003315 387 LKGLCQKG-----MASATIKQFLEFK 407 (831)
Q Consensus 387 l~~~~~~~-----~~~~a~~~~~~~~ 407 (831)
...|. .| +.++|+..|+...
T Consensus 290 g~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 290 GKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 44443 22 4444444444443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.4e-16 Score=171.16 Aligned_cols=123 Identities=14% Similarity=0.154 Sum_probs=110.7
Q ss_pred CCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003315 687 ITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMK---EMGIRPDVISYTVLIAKLCNTQNLEDGITV 763 (831)
Q Consensus 687 ~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~---~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 763 (831)
...-..||+++|++|++ .|++++|.++|++|. ..|+.||..+||+||.+||+.|++++|.++
T Consensus 123 ~~~~~~TynaLIdglcK---------------~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~L 187 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLL---------------TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYV 187 (1134)
T ss_dssp CCHHHHHHHHHHHHHHH---------------HTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHh---------------CCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHH
Confidence 44457899999999998 567999999998886 458999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003315 764 FNEISDRGLEPDTVTYTALLCGYLAKGD-LDRAIALVDEMSVKGIQGDDYTKSSLERGIEKA 824 (831)
Q Consensus 764 ~~~~~~~g~~pd~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~ 824 (831)
|++|.+.|+.||.+||++|+.++++.|+ .++|.++|++|.++|+.||..+|+.++.+..+.
T Consensus 188 f~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 188 LFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 9999999999999999999999999998 589999999999999999999999555444443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.4e-14 Score=151.70 Aligned_cols=346 Identities=13% Similarity=0.066 Sum_probs=165.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003315 211 FMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSM---QEAVEVFLEMEKAGVTPNAFAYSTCIEGLCM 287 (831)
Q Consensus 211 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 287 (831)
+...+.+.|++++|.+.|++..+.| ++..+..|...|...|+. ++|++.|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5666777788888888888877654 444555566666667777 7888888777643 44555566664444
Q ss_pred cC-----ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003315 288 NG-----MLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEK---AECVLLHMEKQGVVPDVYAYSALISGYCKFG 359 (831)
Q Consensus 288 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 359 (831)
.+ ++++|...|++..+.+. +..+..|...|...+..++ +.+.+......| +...+..|...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 44 66777777777777652 2366666666666554433 333333333332 3334555566666666
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcC---CHHHHHH
Q 003315 360 KINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLG---EVEKAMI 436 (831)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~ 436 (831)
.++++......+.+.-.. .++..+..|..+|...| +.++|++
T Consensus 156 ~~~~~~~~a~~~~~~a~~-----------------------------------~~~~a~~~Lg~~~~~~g~~~~~~~A~~ 200 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALN-----------------------------------TTDICYVELATVYQKKQQPEQQAELLK 200 (452)
T ss_dssp CGGGGHHHHHHHHHHHTT-----------------------------------TCTTHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHc-----------------------------------CCHHHHHHHHHHHHHcCCcccHHHHHH
Confidence 544444332222211111 12224445555555555 5666666
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHcc----CChhhHHHHHHHHHHcCCCCCcchHHHHHHH-H--HhcCCHHHHHHHHH
Q 003315 437 LFKEMKDRQIVPDVVNYTTMICGYCLQ----GKLGDALDLFKEMKEMGHKPDIITYNVLAGA-F--AQYGAVQKAFDLLN 509 (831)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~ 509 (831)
+|++..+.+.. +...+..+...|... +++++|...|++.. . -+...+..+... + ...+++++|...++
T Consensus 201 ~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 201 QMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLD 275 (452)
T ss_dssp HHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHH
T ss_pred HHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 66666555432 333334444444333 46666666666655 2 234444444444 2 34566666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcCC-----CHHHHHHHHHHhhhCCCCChHHHHHHHHh----cCCHHHHHHHHHHHHhC
Q 003315 510 YMKRHGLEPNFVTHNMIIEGLCMGG-----RVEEAEAFLDGLKGKCLENYSAMINGYCK----TGHTKEAFQLFMRLSNQ 580 (831)
Q Consensus 510 ~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 580 (831)
+..+.| +......+..+|. .| +.++|..+|++....++..+..|+..|.. ..++++|..+|++..+.
T Consensus 276 ~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 276 NGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 666554 3444445554554 33 56666666665551122224444444443 22555566666555554
Q ss_pred CCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 003315 581 GVLVKKSSCNKLITNLLI----LRDNNNALKLFKTMITLN 616 (831)
Q Consensus 581 ~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 616 (831)
| ++.....+...|.. ..+.++|..+++.+.+.|
T Consensus 352 g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 352 G---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp T---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred C---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 4 23334444444432 234445555555444433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.3e-14 Score=138.82 Aligned_cols=226 Identities=12% Similarity=0.050 Sum_probs=180.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC--CC----hhh
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLS--LN----EYT 242 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~ 242 (831)
...++..++..+...|++++|+..|+++++.. .+..++..++.++...|++++|...|++..+.... ++ ...
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 34578899999999999999999999999887 58889999999999999999999999998864311 11 578
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 003315 243 YVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCD 322 (831)
Q Consensus 243 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (831)
+..+...+...|++++|++.|+++.+. .|+. ..+...|++++|...++++.... +.+...+..++..+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 889999999999999999999999886 4553 34666788899999999988874 5567788889999999
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 003315 323 QNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQ 402 (831)
Q Consensus 323 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 402 (831)
.|++++|...|+++.+..+. +...+..+...+.+.|++++|+..+++.++.... +...+..+...+...|+.++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999887544 6788888899999999999999999988875422 344555555555555555555555
Q ss_pred HHHHHH
Q 003315 403 FLEFKD 408 (831)
Q Consensus 403 ~~~~~~ 408 (831)
++...+
T Consensus 230 ~~~a~~ 235 (258)
T 3uq3_A 230 LDAART 235 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-13 Score=141.87 Aligned_cols=233 Identities=12% Similarity=0.011 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCC-hhHHHHHHHH
Q 003315 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGM-FDEGIDILFQ 195 (831)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~ 195 (831)
..+|..+..++...|++++|+..+.+++...|. +..+|..++.++...|+ +++|+..|++
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-------------------~~~a~~~~g~~l~~~g~d~~eAl~~~~~ 157 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-------------------NYTVWHFRRVLLKSLQKDLHEEMNYITA 157 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-------------------CHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence 556677777777788888888888888777554 55677788888888886 8888888888
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNA 275 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 275 (831)
+++.++. +..+|..+..++...|++++|+..|+++++.. +.+...|..+..++.+.|++++|++.|+++++.. +.+.
T Consensus 158 al~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~ 234 (382)
T 2h6f_A 158 IIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNN 234 (382)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCH
T ss_pred HHHHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCH
Confidence 8877755 77778888888888888888888888887764 4567778778888888888888888888887764 3456
Q ss_pred HHHHHHHHHHHh-cCChhHH-----HHHHHHHHHCCCCCChhhHHHHHHHHHhcC--CHhHHHHHHHHHHHCCCCCCHHH
Q 003315 276 FAYSTCIEGLCM-NGMLDLG-----YELLLKWEEADIPLSAFAYTVVIRWFCDQN--KLEKAECVLLHMEKQGVVPDVYA 347 (831)
Q Consensus 276 ~~~~~l~~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~ 347 (831)
..|+.+..++.. .|..++| +..+++.++.+ |.+...|..+...+...| ++++|.+.+.++ +.. ..+...
T Consensus 235 ~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~a 311 (382)
T 2h6f_A 235 SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYL 311 (382)
T ss_dssp HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHH
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHH
Confidence 677777777777 5554666 46777777764 556777777777777766 577777777776 332 225666
Q ss_pred HHHHHHHHHhcC---------ChHHHHHHHHHH-HhC
Q 003315 348 YSALISGYCKFG---------KINKALLLHHEM-TSK 374 (831)
Q Consensus 348 ~~~li~~~~~~~---------~~~~A~~~~~~~-~~~ 374 (831)
+..++.+|.+.| .+++|+++|+++ .+.
T Consensus 312 l~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 312 IAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 777777777653 247777777776 443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-13 Score=141.07 Aligned_cols=218 Identities=8% Similarity=-0.052 Sum_probs=184.1
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCC-hhHHHHHHHHHHhcCCCCChhhHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGK-VDMALAVYQHLKRLGLSLNEYTYVIVI 247 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~ 247 (831)
...+|..++..+...|++++|+..|+++++.++. +..+++.+..++...|+ +++|+..|++.++.. +.+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 5678899999999999999999999999999855 88899999999999997 999999999999875 45788999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCH
Q 003315 248 KALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCD-QNKL 326 (831)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 326 (831)
.++.+.|++++|+..|+++++.. +-+..+|..+..++...|++++|+..++++++.+ |.+...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999875 4577899999999999999999999999999986 6788999999999999 6665
Q ss_pred hHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 003315 327 EKA-----ECVLLHMEKQGVVPDVYAYSALISGYCKFG--KINKALLLHHEMTSKGIKTNCGVLSVILKGLCQK 393 (831)
Q Consensus 327 ~~A-----~~~~~~~~~~~~~p~~~~~~~li~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 393 (831)
++| ...|++.++..+. +...|+.+..++.+.| ++++|++.+.++ +. ...+...+..+...+.+.
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHH
Confidence 777 4888888887554 7788988888888888 688999988887 32 222344455555555443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-13 Score=136.86 Aligned_cols=226 Identities=12% Similarity=0.124 Sum_probs=140.4
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCC--C----cchH
Q 003315 415 KVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKP--D----IITY 488 (831)
Q Consensus 415 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~ 488 (831)
...+..+...+...|++++|+..|+++.+.. .+...+..+...+...|++++|...++++.+..+.. + ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3445556666666666666666666655544 455555566666666666666666666655432110 1 2445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhcCCHH
Q 003315 489 NVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTK 568 (831)
Q Consensus 489 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 568 (831)
..+...+...|++++|...++++.+. .+. ...+...|+++
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~-----------------------------------~~~-----~~~~~~~~~~~ 122 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE-----------------------------------HRT-----ADILTKLRNAE 122 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------CCC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc-----------------------------------Cch-----hHHHHHHhHHH
Confidence 55555555555555555555555543 222 12333444555
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 569 EAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLV 648 (831)
Q Consensus 569 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 648 (831)
+|...++++....+. +...+..++..+...|++++|...++++.... +.+..++..++.+|...|++++|...|++++
T Consensus 123 ~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 123 KELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 555555555554332 34455666666666777777777777776654 3456777788888888888888888888888
Q ss_pred HCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003315 649 DKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQR 685 (831)
Q Consensus 649 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 685 (831)
+..+. +...|..+...|.+.|++++|...+++..+.
T Consensus 201 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 201 EKDPN-FVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 76433 5777888888888888888888888887763
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-13 Score=136.51 Aligned_cols=199 Identities=12% Similarity=0.017 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChh----hHHH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEY----TYVI 245 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~ 245 (831)
+.++...+..+...|++++|+..|+++++..+. +..++..++.++...|++++|+..|++..+.+ ++.. .|..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~ 79 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEY 79 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHH
Confidence 345667888899999999999999999988754 66788889999999999999999999988733 3333 3788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 003315 246 VIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNK 325 (831)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 325 (831)
+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...+++.++.. |.+...+..+...+...++
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHH
Confidence 8889999999999999999998864 3456788888889999999999999998888774 6677778878734444568
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhC
Q 003315 326 LEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGK---INKALLLHHEMTSK 374 (831)
Q Consensus 326 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~ 374 (831)
+++|.+.|+++.+..+. +...+..+..++...|+ +++|...+++..+.
T Consensus 158 ~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 99999999988886433 46777777778877777 77788888777653
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-11 Score=134.98 Aligned_cols=473 Identities=10% Similarity=0.013 Sum_probs=263.5
Q ss_pred ChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC---hHHHHH
Q 003315 185 MFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGS---MQEAVE 261 (831)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~ 261 (831)
...+-+..|++.+..++. |..+|..++..+.+.+.++.+..+|++++.. .|.....|...+..-.+.|. ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~np~-d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPT-DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 455666677777777754 8888888888888888888888999888875 35566778777877777888 888888
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHHhcCCh--------hHHHHHHHHHHHC-CC-C-CChhhHHHHHHHHHh-------
Q 003315 262 VFLEMEKAG-VTPNAFAYSTCIEGLCMNGML--------DLGYELLLKWEEA-DI-P-LSAFAYTVVIRWFCD------- 322 (831)
Q Consensus 262 ~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~~-~~-~-~~~~~~~~l~~~~~~------- 322 (831)
+|++.+... ..|++..|...+.-..+.++. +...++|+.++.. |. . .+...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 988888752 137777777777655554443 2334666665543 43 2 345667766665432
Q ss_pred --cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHH
Q 003315 323 --QNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATI 400 (831)
Q Consensus 323 --~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 400 (831)
.++++.+.++|++++......-..+|......--..+. ..+..++.+. ..+++.|.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~Ar 262 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNAR 262 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHHH
Confidence 33456677777777643111111222211111000000 0011111110 01112222
Q ss_pred HHHHHHHHC--CCC---cCH-hhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC-------Ch
Q 003315 401 KQFLEFKDM--GFF---LNK-VCYDVIVDSLCKLG-EVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQG-------KL 466 (831)
Q Consensus 401 ~~~~~~~~~--~~~---~~~-~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~ 466 (831)
..+.++... ++. |.. ...+ ....-..+ .....+ ..|...+..--..+ ..
T Consensus 263 ~~~~e~~~~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~~ql---------------~lW~~yi~fEk~~~~~l~~~~~~ 325 (679)
T 4e6h_A 263 SLYQDWLNITKGLKRNLPITLNQAT--ESNLPKPNEYDVQQL---------------LIWLEWIRWESDNKLELSDDLHK 325 (679)
T ss_dssp HHHHHHHHHTTTCCCCCCSSSTTCC--TTTSCCTTCCCHHHH---------------HHHHHHHHHHHTCTTCCCHHHHH
T ss_pred HHHHHHHHHHHhHhhccccccccch--hccCCCCchhHHHHH---------------HHHHHHHHHHHhCCccccchhhH
Confidence 222221110 000 000 0000 00000000 000000 11222221111111 01
Q ss_pred hhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003315 467 GDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAF-DLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDG 545 (831)
Q Consensus 467 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 545 (831)
+.+..+|++++...+. ....|...+..+...|+.++|. +++++.... ++.+...+...+....+.|+++.|.++|++
T Consensus 326 ~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2233445555444222 4445555555555555555564 666666543 244444455555555566666666666665
Q ss_pred hhhC-----------CC--------------CChHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 003315 546 LKGK-----------CL--------------ENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILR 600 (831)
Q Consensus 546 ~~~~-----------~~--------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 600 (831)
+... .| ..|-..+....+.|..+.|..+|.++.+.-+......|...+..-.+.+
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 5432 12 1255555555667788888888888877622223344444443344444
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHHcCCHHHHHH
Q 003315 601 -DNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTP--HLVTYTMMIHGYCKINCLREARD 677 (831)
Q Consensus 601 -~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~ 677 (831)
+.+.|..+|+.+++. .+-+...+...++.....|+.+.|+.+|+.++.....+ ....|...+..-.+.|+.+.+..
T Consensus 484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 589999999999886 34567777888888889999999999999999864322 34678888888889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhc
Q 003315 678 VFNDMKQRGITPDVVTYTVLFDAHSK 703 (831)
Q Consensus 678 ~~~~m~~~~~~p~~~~~~~ll~~~~~ 703 (831)
+.+++.+. .|+......+.+-|.-
T Consensus 563 v~~R~~~~--~P~~~~~~~f~~ry~~ 586 (679)
T 4e6h_A 563 LEKRFFEK--FPEVNKLEEFTNKYKV 586 (679)
T ss_dssp HHHHHHHH--STTCCHHHHHHHHTCB
T ss_pred HHHHHHHh--CCCCcHHHHHHHHhcC
Confidence 99999985 4555566666666644
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.58 E-value=3e-13 Score=135.23 Aligned_cols=237 Identities=12% Similarity=-0.002 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003315 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQI 196 (831)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 196 (831)
+..+...+..+...|++++|...+.++++..|. ++.++..++.+|...|++++|+..++++
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a 63 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-------------------SPYIYNRRAVCYYELAKYDLAQKDIETY 63 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-------------------CSTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-------------------cHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344455566666666666666666666655332 2224556666666666666666666666
Q ss_pred HHcCCCcC--hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 003315 197 NRRGFVWS--ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPN 274 (831)
Q Consensus 197 ~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 274 (831)
++....++ ..++..++..+...|++++|...|++..+.. +.+...+..+...+...|++++|++.|+++.+.. +.+
T Consensus 64 ~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~ 141 (272)
T 3u4t_A 64 FSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTD 141 (272)
T ss_dssp HTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCC
T ss_pred HhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCc
Confidence 65321111 1225566666666666666666666666543 3345566666666666666666666666666542 334
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC---HhHHHHHHHHHHHCC-CCCC------
Q 003315 275 AFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNK---LEKAECVLLHMEKQG-VVPD------ 344 (831)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------ 344 (831)
...+..+...+...+++++|...++++++.. |.+...+..+...+...|+ +++|...+++..+.. ..|+
T Consensus 142 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 220 (272)
T 3u4t_A 142 PKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDEL 220 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHH
Confidence 4455555523333446667777666666653 4445666666666666666 666666666665431 0122
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003315 345 VYAYSALISGYCKFGKINKALLLHHEMTSKG 375 (831)
Q Consensus 345 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 375 (831)
...|..+...|.+.|++++|.+.+++..+..
T Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 221 IEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2455666677777777777777777776643
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.58 E-value=6.8e-13 Score=130.82 Aligned_cols=202 Identities=10% Similarity=-0.081 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA 249 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (831)
+.++..++..+...|++++|+..|+++++..+. +..++..++.++...|++++|.+.|+++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 678889999999999999999999999988644 77888999999999999999999999998764 4577888999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhH
Q 003315 250 LCKKGSMQEAVEVFLEMEKAGVTP-NAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEK 328 (831)
Q Consensus 250 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 328 (831)
+...|++++|++.|+++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998732344 45678888889999999999999999998875 5678888999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003315 329 AECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKG 375 (831)
Q Consensus 329 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 375 (831)
|...++++.+..+ .+...+..+...+.+.|++++|.+.++++.+..
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999887654 367788888889999999999999999988753
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-13 Score=134.51 Aligned_cols=205 Identities=16% Similarity=0.079 Sum_probs=160.7
Q ss_pred CcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHH
Q 003315 166 STLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVI 245 (831)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 245 (831)
.+..+.++..++..+...|++++|+..|+++++..+. +..++..++..+...|++++|...|+++.+.. +.+...+..
T Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 96 (243)
T 2q7f_A 19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYG 96 (243)
T ss_dssp -----------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHH
Confidence 3456778899999999999999999999999987644 78889999999999999999999999998764 457788999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 003315 246 VIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNK 325 (831)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 325 (831)
+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|+
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCC
Confidence 9999999999999999999998864 4567788889999999999999999999998875 5678889999999999999
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003315 326 LEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKG 375 (831)
Q Consensus 326 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 375 (831)
+++|.+.|+++.+.... +..++..+...|.+.|++++|...++++.+..
T Consensus 175 ~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 175 LDEALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999887543 67888899999999999999999999988754
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=5.4e-12 Score=126.00 Aligned_cols=224 Identities=9% Similarity=-0.053 Sum_probs=183.9
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCChhhHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVE----CGKVDMALAVYQHLKRLGLSLNEYTYV 244 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 244 (831)
++.++..++..|...|++++|+..|+++.+.+ +..++..+...+.. .+++++|...|++..+.+ ++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 45678899999999999999999999998843 56778889999999 999999999999998864 778888
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 003315 245 IVIKALCK----KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCM----NGMLDLGYELLLKWEEADIPLSAFAYTVV 316 (831)
Q Consensus 245 ~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 316 (831)
.+...|.. .+++++|++.|++..+.+ +..++..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 89999998 999999999999998874 67788888888888 899999999999998876 56778888
Q ss_pred HHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 003315 317 IRWFCD----QNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCK----FGKINKALLLHHEMTSKGIKTNCGVLSVILK 388 (831)
Q Consensus 317 ~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 388 (831)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+. ...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHH
Confidence 888888 899999999999988863 56778888888888 8999999999988887642 445555555
Q ss_pred HHHh----cCChHHHHHHHHHHHHCC
Q 003315 389 GLCQ----KGMASATIKQFLEFKDMG 410 (831)
Q Consensus 389 ~~~~----~~~~~~a~~~~~~~~~~~ 410 (831)
.+.. .++.++|++.|+...+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 5655 666666666666655543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-12 Score=126.23 Aligned_cols=204 Identities=10% Similarity=-0.018 Sum_probs=174.6
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 003315 168 LLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVI 247 (831)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 247 (831)
.++.++..++..+...|++++|+..|+++.+..+. +..++..++.++...|++++|...|++..+.. +.+...+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 36678889999999999999999999999988644 67888999999999999999999999998764 45778889999
Q ss_pred HHHHhc-CChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 003315 248 KALCKK-GSMQEAVEVFLEMEKAGVTPN-AFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNK 325 (831)
Q Consensus 248 ~~~~~~-g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 325 (831)
..+... |++++|++.++++.+.+..|+ ...+..+..++...|++++|...++++.+.. +.+...+..++..+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 999999 999999999999987322343 5678888899999999999999999998875 5568888999999999999
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 326 LEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSK 374 (831)
Q Consensus 326 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 374 (831)
+++|...++++.+..+..+...+..+...+...|+.+.|..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999888654237777888888888999999999999888764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-12 Score=128.66 Aligned_cols=202 Identities=9% Similarity=-0.088 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003315 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQI 196 (831)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 196 (831)
+..+..++..+...|++++|...+.++++..+. +..++..++..|...|++++|+..|+++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-------------------~~~~~~~la~~~~~~~~~~~A~~~~~~a 97 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-------------------SADAHAALAVVFQTEMEPKLADEEYRKA 97 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445667777888888888888888888876443 4567889999999999999999999999
Q ss_pred HHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 003315 197 NRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSL-NEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNA 275 (831)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 275 (831)
.+..+. +..++..+...+...|++++|...|+++.+.+..| +...+..++..+...|++++|++.|+++.+.. +.+.
T Consensus 98 ~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 175 (252)
T 2ho1_A 98 LASDSR-NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQP 175 (252)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCH
T ss_pred HHHCcC-cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccH
Confidence 888644 77888889999999999999999999988722223 56678888899999999999999999998864 4467
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 003315 276 FAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQG 340 (831)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 340 (831)
.++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus 176 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 176 SVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 788899999999999999999999998875 6678888999999999999999999999998864
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=5.1e-12 Score=126.20 Aligned_cols=224 Identities=8% Similarity=-0.093 Sum_probs=164.4
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHH----cCChhHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVS----VGMFDEGID 191 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~ 191 (831)
++.++..++..+...|++++|...+.+.++. . ++.++..++..|.. .+++++|+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~-------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~ 63 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--K-------------------ENSGCFNLGVLYYQGQGVEKNLKKAAS 63 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--T-------------------CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--C-------------------CHHHHHHHHHHHHcCCCcCCCHHHHHH
Confidence 5666777777777777777777777776652 1 23466677777777 778888888
Q ss_pred HHHHHHHcCCCcChhhHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHH
Q 003315 192 ILFQINRRGFVWSICSCNYFMNQLVE----CGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK----KGSMQEAVEVF 263 (831)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 263 (831)
.|+++.+.+ +..++..+...+.. .+++++|+..|++..+.+ ++..+..+...|.. .+++++|++.|
T Consensus 64 ~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~ 137 (273)
T 1ouv_A 64 FYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYF 137 (273)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 888777764 56667777777777 778888888887777653 66677777777777 77888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHhHHHHHHHH
Q 003315 264 LEMEKAGVTPNAFAYSTCIEGLCM----NGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCD----QNKLEKAECVLLH 335 (831)
Q Consensus 264 ~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 335 (831)
++..+.+ +...+..+...|.. .+++++|...+++..+.+ ++..+..+...|.. .+++++|...|++
T Consensus 138 ~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~ 211 (273)
T 1ouv_A 138 TKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSK 211 (273)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred HHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence 8777754 45566667777776 778888888888877764 45667777777777 7888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 003315 336 MEKQGVVPDVYAYSALISGYCK----FGKINKALLLHHEMTSKG 375 (831)
Q Consensus 336 ~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~ 375 (831)
..+.+ +...+..+...|.+ .+++++|.+.|++..+.+
T Consensus 212 a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 212 ACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77763 35667777777777 788888888888877764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-13 Score=137.34 Aligned_cols=228 Identities=14% Similarity=0.021 Sum_probs=176.4
Q ss_pred HHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChh
Q 003315 127 LCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSIC 206 (831)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 206 (831)
+...|++++|...+.++++..+.. .+..+.++..++..+...|++++|+..|+++++.++. +..
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~ 78 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALT---------------DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPE 78 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCC---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHH
T ss_pred cCccchHHHHHHHHHHHHhccccc---------------CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHH
Confidence 344567778888888777652211 1225678889999999999999999999999988744 788
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003315 207 SCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLC 286 (831)
Q Consensus 207 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 286 (831)
++..++.++...|++++|...|++.++.. +.+...+..+...+.+.|++++|++.|+++.+. .|+.......+..+.
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~ 155 (275)
T 1xnf_A 79 VFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAE 155 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence 89999999999999999999999998864 456788999999999999999999999999876 455544555555667
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHH
Q 003315 287 MNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVP---DVYAYSALISGYCKFGKINK 363 (831)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~~~ 363 (831)
..|++++|...+++..... +++...+ .++..+...++.++|.+.+++..+..... +...+..+...|.+.|++++
T Consensus 156 ~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 233 (275)
T 1xnf_A 156 QKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS 233 (275)
T ss_dssp HHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHH
Confidence 7799999999998887764 4444444 37777778888888999888887652210 14677788888888899999
Q ss_pred HHHHHHHHHhCC
Q 003315 364 ALLLHHEMTSKG 375 (831)
Q Consensus 364 A~~~~~~~~~~~ 375 (831)
|...|++.....
T Consensus 234 A~~~~~~al~~~ 245 (275)
T 1xnf_A 234 ATALFKLAVANN 245 (275)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhCC
Confidence 999888888754
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-13 Score=133.17 Aligned_cols=195 Identities=14% Similarity=0.078 Sum_probs=113.6
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCC
Q 003315 87 VVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGS 166 (831)
Q Consensus 87 ~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (831)
..+..+...|+++.|+.+|+.+.+.. +.++..+..++.++...|++++|...+.++++..+.
T Consensus 28 ~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----------------- 89 (243)
T 2q7f_A 28 QQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS----------------- 89 (243)
T ss_dssp --------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-----------------
Confidence 34455566677777777777776543 236667777777777777777777777766665332
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
+..++..++..+...|++++|+..++++.+..+. +..++..++..+...|++++|...++++.+.. +.+...+..+
T Consensus 90 --~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 165 (243)
T 2q7f_A 90 --AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQF 165 (243)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred --chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 3455666777777777777777777776665533 55566666666666677777777666666543 3345566666
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEA 304 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (831)
...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 166 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 166 GMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666666666666666666665542 233445555555566666666666666655554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-13 Score=137.05 Aligned_cols=247 Identities=10% Similarity=-0.022 Sum_probs=195.5
Q ss_pred ccCChhHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchH
Q 003315 94 LRKEPKIALSFFEQLKRSGF---SHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLT 170 (831)
Q Consensus 94 ~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (831)
..|+++.|+..|+.+.+... +.++.++..++.++...|++++|...+.++++..|. ++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-------------------~~ 77 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-------------------MP 77 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------------------CH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-------------------cH
Confidence 45889999999999986422 225778899999999999999999999999988554 56
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKAL 250 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (831)
.++..++..|...|++++|+..|+++++..+. +..++..++.++.+.|++++|...|+++.+.. |+.......+..+
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~ 154 (275)
T 1xnf_A 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLA 154 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHH
Confidence 68899999999999999999999999998744 77889999999999999999999999999864 4444444555566
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---CChhhHHHHHHHHHhcCCHh
Q 003315 251 CKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIP---LSAFAYTVVIRWFCDQNKLE 327 (831)
Q Consensus 251 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 327 (831)
...|++++|+..+++..... +++...+ .++..+...++.++|...+++..+.... .+..++..++..+.+.|+++
T Consensus 155 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 232 (275)
T 1xnf_A 155 EQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLD 232 (275)
T ss_dssp HHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHH
Confidence 77899999999998887753 3444444 4777788888899999999988765311 12578899999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003315 328 KAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLH 368 (831)
Q Consensus 328 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~ 368 (831)
+|...|++..+..+. + +.....++...|++++|++.+
T Consensus 233 ~A~~~~~~al~~~p~-~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 233 SATALFKLAVANNVH-N---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHTTCCT-T---CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhCCch-h---HHHHHHHHHHHHHHHhhHHHH
Confidence 999999999987432 3 233355677788888887765
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-12 Score=123.40 Aligned_cols=203 Identities=9% Similarity=-0.093 Sum_probs=163.4
Q ss_pred CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHH
Q 003315 115 HNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILF 194 (831)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 194 (831)
.++..+..++..+...|++++|...+.++++..+. +..++..++..|...|++++|+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------------------~~~~~~~l~~~~~~~~~~~~A~~~~~ 66 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-------------------NELAWLVRAEIYQYLKVNDKAQESFR 66 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-------------------chHHHHHHHHHHHHcCChHHHHHHHH
Confidence 35677788888888888998888888888877443 45577888888889999999999999
Q ss_pred HHHHcCCCcChhhHHHHHHHHHHc-CChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 003315 195 QINRRGFVWSICSCNYFMNQLVEC-GKVDMALAVYQHLKRLGLSL-NEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVT 272 (831)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 272 (831)
++.+..+. +..++..++..+... |++++|...|+++.+.+..| +...+..+...+...|++++|++.|+++.+.. +
T Consensus 67 ~a~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 144 (225)
T 2vq2_A 67 QALSIKPD-SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-P 144 (225)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHhCCC-ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 88887643 677788888888888 99999999998888722222 35678888888888999999999998888763 3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 273 PNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIP-LSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 273 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
.+...+..+...+...|++++|...++++.+.. | .+...+..+...+...|+.+.|...++.+.+.
T Consensus 145 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 145 QFPPAFKELARTKMLAGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 457788888888999999999999999888765 4 67777888888888899999999999888765
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.8e-13 Score=143.69 Aligned_cols=274 Identities=13% Similarity=0.018 Sum_probs=190.4
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHh
Q 003315 87 VVEKLYSLRKEPKIALSFFEQLKRSGFSHNL----CTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALC 162 (831)
Q Consensus 87 ~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (831)
..+..+...|+++.|+.+|+.+.+.+.. ++ ..+..++.++...|++++|...+.++++.....
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------------ 119 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM------------ 119 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc------------
Confidence 3455667889999999999999865322 44 578889999999999999999999887752110
Q ss_pred cCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-----CCcChhhHHHHHHHHHHcCC-----------------
Q 003315 163 GEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRG-----FVWSICSCNYFMNQLVECGK----------------- 220 (831)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~----------------- 220 (831)
.+.+....++..++..|...|++++|+..|+++++.. ......++..+...+...|+
T Consensus 120 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 120 -NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred -cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence 1122356788999999999999999999999987651 12234577888888999999
Q ss_pred hhHHHHHHHHHHhc----CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC
Q 003315 221 VDMALAVYQHLKRL----GL-SLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGV-TPN----AFAYSTCIEGLCMNGM 290 (831)
Q Consensus 221 ~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~ 290 (831)
+++|+..+++..+. +. +....++..+...+...|++++|++.+++..+... .++ ..++..+...+...|+
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ 278 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC
Confidence 88888888876542 11 11234677788888888999999988888765310 011 2266677777888888
Q ss_pred hhHHHHHHHHHHHCCC--C---CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCC
Q 003315 291 LDLGYELLLKWEEADI--P---LSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGV-----VPDVYAYSALISGYCKFGK 360 (831)
Q Consensus 291 ~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~li~~~~~~~~ 360 (831)
+++|...+++..+... . ....++..+...+...|++++|...+++..+... .....++..+...|.+.|+
T Consensus 279 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 358 (411)
T 4a1s_A 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG 358 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc
Confidence 8888888877665310 0 1145666777777777777777777777654310 0012355566667777777
Q ss_pred hHHHHHHHHHHHhC
Q 003315 361 INKALLLHHEMTSK 374 (831)
Q Consensus 361 ~~~A~~~~~~~~~~ 374 (831)
+++|...+++..+.
T Consensus 359 ~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 359 HERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777666553
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.48 E-value=5.2e-12 Score=117.51 Aligned_cols=167 Identities=15% Similarity=0.020 Sum_probs=145.0
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
++.+|..++..|...|++++|+..|+++++.++. +..++..+..++.+.|++++|...++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4668999999999999999999999999998855 88889999999999999999999999988764 456777888888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhH
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEK 328 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 328 (831)
.+...++++.|.+.+++..+.. +.+...+..+..++.+.|++++|++.|++.++.+ |.+..++..+...|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 8899999999999999988764 4467788888888999999999999999988875 6678888889999999999999
Q ss_pred HHHHHHHHHHC
Q 003315 329 AECVLLHMEKQ 339 (831)
Q Consensus 329 A~~~~~~~~~~ 339 (831)
|.+.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999988875
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-11 Score=123.07 Aligned_cols=218 Identities=9% Similarity=0.022 Sum_probs=175.8
Q ss_pred hhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHH-------HcCCh-------hHHHHHHHHHHH-
Q 003315 134 KKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYV-------SVGMF-------DEGIDILFQINR- 198 (831)
Q Consensus 134 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~- 198 (831)
++|...|.+++...|. ++.+|..++..+. ..|++ ++|+.+|+++++
T Consensus 33 ~~a~~~~~~al~~~p~-------------------~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~ 93 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-------------------HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 93 (308)
T ss_dssp HHHHHHHHHHHHHHTT-------------------CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCC-------------------CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH
Confidence 5677888888887554 6678888888776 35886 999999999998
Q ss_pred cCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC-hh-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 003315 199 RGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLN-EY-TYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAF 276 (831)
Q Consensus 199 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 276 (831)
..+. +...+..++..+.+.|++++|..+|++.++. .|+ .. .|..++..+.+.|++++|.++|+++.+.+ +++..
T Consensus 94 ~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~ 169 (308)
T 2ond_A 94 LLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHH 169 (308)
T ss_dssp TTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTH
T ss_pred hCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHH
Confidence 4543 7778999999999999999999999999985 343 44 79999999999999999999999999864 33444
Q ss_pred HHHHHHHHHH-hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC-CCC--CHHHHHHHH
Q 003315 277 AYSTCIEGLC-MNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQG-VVP--DVYAYSALI 352 (831)
Q Consensus 277 ~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~li 352 (831)
.|...+.... ..|++++|..+|++.++.. |.+...+..++..+.+.|++++|..+|++..... ..| ....|..++
T Consensus 170 ~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~ 248 (308)
T 2ond_A 170 VYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 248 (308)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 5544433322 3699999999999998874 6678889999999999999999999999999863 343 467888888
Q ss_pred HHHHhcCChHHHHHHHHHHHhCC
Q 003315 353 SGYCKFGKINKALLLHHEMTSKG 375 (831)
Q Consensus 353 ~~~~~~~~~~~A~~~~~~~~~~~ 375 (831)
....+.|+.+.|..+++++.+..
T Consensus 249 ~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 249 AFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHc
Confidence 88888999999999999888753
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-09 Score=120.71 Aligned_cols=441 Identities=8% Similarity=-0.041 Sum_probs=275.1
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHH
Q 003315 98 PKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMI 177 (831)
Q Consensus 98 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 177 (831)
+..-+..|+.....+ +.|...|..++..+...+..+.+..+|..++...|. ....|...+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~-------------------~~~lW~~Yi 107 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL-------------------MANIWCMRL 107 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC-------------------CHHHHHHHH
Confidence 444555556555443 459999999999999999999999999999988443 566788888
Q ss_pred HHHHHcCC---hhHHHHHHHHHHHcCC-CcChhhHHHHHHHHHHcCCh--------hHHHHHHHHHHh-cCC-CC-Chhh
Q 003315 178 KAYVSVGM---FDEGIDILFQINRRGF-VWSICSCNYFMNQLVECGKV--------DMALAVYQHLKR-LGL-SL-NEYT 242 (831)
Q Consensus 178 ~~~~~~~~---~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--------~~A~~~~~~~~~-~~~-~~-~~~~ 242 (831)
..-.+.|. ++.+..+|++++...+ .|++..|...+....+.++. +.+.++|+..+. .|. .+ +...
T Consensus 108 ~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~i 187 (679)
T 4e6h_A 108 SLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQF 187 (679)
T ss_dssp HHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred HHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHH
Confidence 88888888 9999999999998752 36888888877766665543 345588888764 354 34 3467
Q ss_pred HHHHHHHHH---------hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhH
Q 003315 243 YVIVIKALC---------KKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAY 313 (831)
Q Consensus 243 ~~~l~~~~~---------~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 313 (831)
|...+.... ..++.+.+..+|++++......-..+|......-...+. ..+..++.+
T Consensus 188 W~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e------------- 253 (679)
T 4e6h_A 188 WNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE------------- 253 (679)
T ss_dssp HHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH-------------
T ss_pred HHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH-------------
Confidence 777776543 234577889999998853211112233222111101010 011111111
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHC--CCC---------------C-----C---HHHHHHHHHHHHhcC-------Ch
Q 003315 314 TVVIRWFCDQNKLEKAECVLLHMEKQ--GVV---------------P-----D---VYAYSALISGYCKFG-------KI 361 (831)
Q Consensus 314 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---------------p-----~---~~~~~~li~~~~~~~-------~~ 361 (831)
...+++.|...+.++... ++. | + ...|...+..--..+ ..
T Consensus 254 --------~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~ 325 (679)
T 4e6h_A 254 --------LSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHK 325 (679)
T ss_dssp --------HHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHH
T ss_pred --------hhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhH
Confidence 011223333333332110 000 0 0 133444444322222 12
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHH-HHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003315 362 NKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATI-KQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKE 440 (831)
Q Consensus 362 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 440 (831)
+.+..+|++.+... .-+...|...+..+...|+.++|. ++|+...... +.+...+...+....+.|+++.|.++|+.
T Consensus 326 ~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34556677766542 235666767777777777777775 7777776543 33556666777777778888888888887
Q ss_pred HHhCC---------CCC------------ChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhc-
Q 003315 441 MKDRQ---------IVP------------DVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQY- 498 (831)
Q Consensus 441 ~~~~~---------~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 498 (831)
+.+.. ..| ....|...+....+.|+.+.|..+|.++.+.-.......|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 76521 012 12367777777778888889999998887751112233444333333333
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC------ChHHHHHHHHhcCCHHHHHH
Q 003315 499 GAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLE------NYSAMINGYCKTGHTKEAFQ 572 (831)
Q Consensus 499 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~ 572 (831)
++.+.|..+|+..++. ++.+...+...+......|+.+.|..+|+......+. .|...+..-.+.|+.+.+..
T Consensus 484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4588899999888876 4556666677777777888999999999988887663 16666666677899999999
Q ss_pred HHHHHHhCCCC
Q 003315 573 LFMRLSNQGVL 583 (831)
Q Consensus 573 ~~~~~~~~~~~ 583 (831)
+.+++.+.-+.
T Consensus 563 v~~R~~~~~P~ 573 (679)
T 4e6h_A 563 LEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHSTT
T ss_pred HHHHHHHhCCC
Confidence 99998887653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-12 Score=140.02 Aligned_cols=237 Identities=13% Similarity=-0.031 Sum_probs=163.5
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcC----hhhHHHHHHHHHHcCChhHHHHHHHHHHhc----CCCC-C
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWS----ICSCNYFMNQLVECGKVDMALAVYQHLKRL----GLSL-N 239 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~ 239 (831)
...++...+..+...|++++|+..|+++++.++. + ..++..+...+...|++++|...|++..+. +.+| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4456778899999999999999999999988644 3 356788889999999999999999987642 1111 2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------hhHH
Q 003315 240 EYTYVIVIKALCKKGSMQEAVEVFLEMEKAGV-TPN----AFAYSTCIEGLCMNGM--------------------LDLG 294 (831)
Q Consensus 240 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~--------------------~~~a 294 (831)
..++..+...+...|++++|+..++++.+... .++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 45778888899999999999999998876310 012 3477788888888998 8888
Q ss_pred HHHHHHHHHC----C-CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHH
Q 003315 295 YELLLKWEEA----D-IPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGV-VPD----VYAYSALISGYCKFGKINKA 364 (831)
Q Consensus 295 ~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~~~~~~A 364 (831)
...+++..+. + .+....++..+...+...|++++|...+++..+... .++ ..++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 8888776543 1 111234677788888888888888888888765311 112 23667777788888888888
Q ss_pred HHHHHHHHhCCCC-CC----HhhHHHHHHHHHhcCChHHHHHHHHHH
Q 003315 365 LLLHHEMTSKGIK-TN----CGVLSVILKGLCQKGMASATIKQFLEF 406 (831)
Q Consensus 365 ~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~ 406 (831)
...+++....... .+ ..++..+...+...|++++|...++..
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 8888776542110 01 223334444444444554444444443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-12 Score=138.15 Aligned_cols=280 Identities=11% Similarity=-0.037 Sum_probs=187.7
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcCh----hhHHHHHHHHHHcCChhHHHHHHHHHHhc----C-CCCC
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSI----CSCNYFMNQLVECGKVDMALAVYQHLKRL----G-LSLN 239 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~ 239 (831)
....+..++..+...|++++|+..|+++++.++. +. .++..+...+...|++++|...|++..+. + .+..
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3445668889999999999999999999988644 43 46888899999999999999999987753 1 1223
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCC-----------------hhHHHHH
Q 003315 240 EYTYVIVIKALCKKGSMQEAVEVFLEMEKA----G-VTPNAFAYSTCIEGLCMNGM-----------------LDLGYEL 297 (831)
Q Consensus 240 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~-~~p~~~~~~~l~~~~~~~~~-----------------~~~a~~~ 297 (831)
...+..+...|...|++++|++.++++.+. + ......++..+...|...|+ +++|...
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 457888889999999999999999988764 1 11224467778888888888 8888888
Q ss_pred HHHHHHC----C-CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHHHHHH
Q 003315 298 LLKWEEA----D-IPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVV-PD----VYAYSALISGYCKFGKINKALLL 367 (831)
Q Consensus 298 ~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~~~~~~A~~~ 367 (831)
+++..+. + .+....++..+...+...|++++|...+++..+.... ++ ...+..+...|...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 8776542 1 1112346777788888888888888888777653110 11 22566677777778888888777
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--
Q 003315 368 HHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQ-- 445 (831)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 445 (831)
+++......... + ......++..+...+...|++++|...+++.....
T Consensus 286 ~~~al~~~~~~~---------------~---------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 286 YKRTLALAVELG---------------E---------------REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HHHHHHHHHHTT---------------C---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---------------C---------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 777654211000 0 00013344555666666666666666666554320
Q ss_pred ---CCCChhhHHHHHHHHHccCChhhHHHHHHHHHHc
Q 003315 446 ---IVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEM 479 (831)
Q Consensus 446 ---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 479 (831)
......++..+...|...|++++|...+++..+.
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 0011335556666677777777777777776654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-12 Score=137.56 Aligned_cols=243 Identities=15% Similarity=0.047 Sum_probs=152.9
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
....+...+..+...|++++|...+.++++..+... .....++..++..|...|++++|+..+++
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 72 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL---------------KTLSAIYSQLGNAYFYLHDYAKALEYHHH 72 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH---------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccH---------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 444555666666677777777777777666533211 01234566777777777777777777776
Q ss_pred HHHc----CC-CcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCC----hhhHHHHHHHHHhcCC----------
Q 003315 196 INRR----GF-VWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGL-SLN----EYTYVIVIKALCKKGS---------- 255 (831)
Q Consensus 196 ~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~---------- 255 (831)
++.. +. +....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 73 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 152 (406)
T 3sf4_A 73 DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDV 152 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchh
Confidence 5433 11 11244566666777777777777777776654210 011 3366667777777777
Q ss_pred ----------hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCC---ChhhHHH
Q 003315 256 ----------MQEAVEVFLEMEKA----GVTP-NAFAYSTCIEGLCMNGMLDLGYELLLKWEEAD--IPL---SAFAYTV 315 (831)
Q Consensus 256 ----------~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~---~~~~~~~ 315 (831)
+++|++.+++..+. +..| ...++..+...+...|++++|...+++..+.. .+. ...++..
T Consensus 153 ~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 232 (406)
T 3sf4_A 153 GEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN 232 (406)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 77777777766542 1111 12356677777778888888888887776531 111 1236777
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 316 VIRWFCDQNKLEKAECVLLHMEKQGVV-PD----VYAYSALISGYCKFGKINKALLLHHEMTS 373 (831)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 373 (831)
+...+...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+
T Consensus 233 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 233 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 888888888888888888877643111 11 45677788888888888888888887764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.3e-12 Score=128.95 Aligned_cols=277 Identities=13% Similarity=-0.006 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcC----hhhHHHHHHHHHHcCChhHHHHHHHHHHhc----CCC-CChh
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWS----ICSCNYFMNQLVECGKVDMALAVYQHLKRL----GLS-LNEY 241 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~ 241 (831)
..+...+..+...|++++|+..|+++++.++. + ..++..+...+...|++++|...+++..+. +.+ ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 35567788899999999999999999987644 3 356788899999999999999999887642 111 1245
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------hhHHHH
Q 003315 242 TYVIVIKALCKKGSMQEAVEVFLEMEKAGV-TPN----AFAYSTCIEGLCMNGM--------------------LDLGYE 296 (831)
Q Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 296 (831)
.+..+...+...|++++|.+.++++.+... .++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 778888899999999999999998765310 112 3367777888888888 888888
Q ss_pred HHHHHHHC----C-CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHH
Q 003315 297 LLLKWEEA----D-IPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGV-VPD----VYAYSALISGYCKFGKINKALL 366 (831)
Q Consensus 297 ~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~~~~~~A~~ 366 (831)
.+++..+. + .+....++..+...+...|++++|.+.+++..+... .++ ..++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88776542 1 111234667777778888888888888877664310 011 2256666777777777777777
Q ss_pred HHHHHHhCCCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003315 367 LHHEMTSKGIK-TNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQ 445 (831)
Q Consensus 367 ~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 445 (831)
.+++....... .+. .....++..+...+...|++++|...+++.....
T Consensus 245 ~~~~al~~~~~~~~~-------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 245 YYKKTLLLARQLKDR-------------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcch-------------------------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 77766532100 000 0013345556666666677777766666654320
Q ss_pred -----CCCChhhHHHHHHHHHccCChhhHHHHHHHHHHc
Q 003315 446 -----IVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEM 479 (831)
Q Consensus 446 -----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 479 (831)
......++..+...|...|++++|...+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 0111335566677777777777777777777654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.8e-12 Score=137.55 Aligned_cols=196 Identities=8% Similarity=-0.127 Sum_probs=158.6
Q ss_pred hHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMF-DEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVI 247 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 247 (831)
...++..++..|...|++ ++|+..|+++++.++. +..++..+..+|.+.|++++|...|++.++.. |+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHH
Confidence 567788888888889999 9999999998888744 67788888888999999999999998888754 6677888888
Q ss_pred HHHHhc---------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CChhHHHHHHHHHHHCCCC---
Q 003315 248 KALCKK---------GSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMN--------GMLDLGYELLLKWEEADIP--- 307 (831)
Q Consensus 248 ~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~--- 307 (831)
..+... |++++|++.|+++.+.. +.+...+..+..+|... |++++|...|++.++.+ |
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcc
Confidence 888888 88889999988888764 44577888888888887 88888888888888864 4
Q ss_pred CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003315 308 LSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHE 370 (831)
Q Consensus 308 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 370 (831)
.+...+..+...|...|++++|.+.|++..+..+. +...+..+..++...|++++|++.+..
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 57788888888888888888888888888876544 566777788888888888888765543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.3e-12 Score=129.38 Aligned_cols=274 Identities=14% Similarity=0.040 Sum_probs=178.3
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHh
Q 003315 87 VVEKLYSLRKEPKIALSFFEQLKRSGFSHN----LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALC 162 (831)
Q Consensus 87 ~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (831)
..+..+...|+++.|+.+|+.+.+.+.. + ...+..++.++...|++++|...+.+.+......
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------ 76 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI------------ 76 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc------------
Confidence 4456667789999999999988754322 3 4667788888889999999998888876652110
Q ss_pred cCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-cC----hhhHHHHHHHHHHcCC-----------------
Q 003315 163 GEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFV-WS----ICSCNYFMNQLVECGK----------------- 220 (831)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~----------------- 220 (831)
.+.+....++..++..|...|++++|+..++++++.... ++ ..++..+...+...|+
T Consensus 77 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a 155 (338)
T 3ro2_A 77 -GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV 155 (338)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred -cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence 011224567888889999999999999998887654211 11 3367777888888888
Q ss_pred ---hhHHHHHHHHHHhc----CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHh
Q 003315 221 ---VDMALAVYQHLKRL----GL-SLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGV-TPN----AFAYSTCIEGLCM 287 (831)
Q Consensus 221 ---~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~ 287 (831)
+++|...+++..+. +. +.....+..+...+...|++++|.+.++++.+... .++ ..++..+...+..
T Consensus 156 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (338)
T 3ro2_A 156 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 235 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 88888888776532 10 11133667777778888888888888887764310 011 2256666777777
Q ss_pred cCChhHHHHHHHHHHHCC--CC---CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHh
Q 003315 288 NGMLDLGYELLLKWEEAD--IP---LSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGV-----VPDVYAYSALISGYCK 357 (831)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~li~~~~~ 357 (831)
.|++++|...+++..+.. .. ....++..+...+...|++++|...+++..+... .....++..+...|.+
T Consensus 236 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 315 (338)
T 3ro2_A 236 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 315 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 777777777777765431 00 0144566667777777777777777766654210 0012345556666667
Q ss_pred cCChHHHHHHHHHHHhC
Q 003315 358 FGKINKALLLHHEMTSK 374 (831)
Q Consensus 358 ~~~~~~A~~~~~~~~~~ 374 (831)
.|++++|...+++..+.
T Consensus 316 ~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 316 LGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHC
T ss_pred cCChHHHHHHHHHHHHH
Confidence 77777777777666553
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-11 Score=111.90 Aligned_cols=168 Identities=13% Similarity=0.048 Sum_probs=136.6
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
++.+|..++.++...|++++|...|.++++.+|. ++.++..++.+|...|++++|+..+.+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-------------------~~~~~~~la~~~~~~~~~~~a~~~~~~ 64 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-------------------NVETLLKLGKTYMDIGLPNDAIESLKK 64 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------------CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6778888888888888888888888888887554 556788888888888888888888888
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNA 275 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 275 (831)
+....+. +...+..+...+...++++.|...+++..+.. +.+...+..+...+.+.|++++|++.|++..+.. +.+.
T Consensus 65 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~ 141 (184)
T 3vtx_A 65 FVVLDTT-SAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFI 141 (184)
T ss_dssp HHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHhcCch-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhh
Confidence 8877644 66777778888888888888888888887754 4567788888888888888888888888888764 4466
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003315 276 FAYSTCIEGLCMNGMLDLGYELLLKWEEAD 305 (831)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (831)
.++..+..+|.+.|++++|...|++.++.+
T Consensus 142 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 142 RAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 788888888888888888888888888764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-10 Score=118.02 Aligned_cols=215 Identities=12% Similarity=-0.060 Sum_probs=147.8
Q ss_pred hHHHHHHHHHHHcCCCcChhhHHHHHHHHH-------HcCCh-------hHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003315 187 DEGIDILFQINRRGFVWSICSCNYFMNQLV-------ECGKV-------DMALAVYQHLKRLGLSLNEYTYVIVIKALCK 252 (831)
Q Consensus 187 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (831)
++|+..|+++++..+. ++..|..++..+. +.|++ ++|..+|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 6788899998887644 7778888777765 35775 8888999888873123456688888888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHH-hcCCHhHH
Q 003315 253 KGSMQEAVEVFLEMEKAGVTPN-AF-AYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFC-DQNKLEKA 329 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~~~~~~p~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 329 (831)
.|++++|.++|+++++. .|+ .. .|..++..+.+.|++++|..+|++.++.+ |.+...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 89999999999888875 443 33 78888888888888888888888888764 445555554444322 25888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCC--HhhHHHHHHHHHhcCChHHHHHHHHHH
Q 003315 330 ECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKG-IKTN--CGVLSVILKGLCQKGMASATIKQFLEF 406 (831)
Q Consensus 330 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~ 406 (831)
.++|++..+..+. +...|..++..+.+.|++++|..+|++.+... ..|+ ...+..++......|+.+.+..++..+
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888776433 67777788888888888888888888887752 2332 223333333333344444444443333
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-11 Score=133.95 Aligned_cols=215 Identities=12% Similarity=-0.024 Sum_probs=186.2
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh-hhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHH
Q 003315 97 EPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQ-KKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDA 175 (831)
Q Consensus 97 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (831)
..+.|+..+....... +.++..+..++.++...|++ ++|...+.++++..|. +..++..
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-------------------~~~a~~~ 142 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-------------------LVEAWNQ 142 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-------------------CHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-------------------CHHHHHH
Confidence 3556666776655432 45899999999999999999 9999999999998554 5678999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc---------CChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 176 MIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVEC---------GKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 176 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
++.+|...|++++|+..|+++++.. |+..++..+..++... |++++|+..|++.++.. +.+...|..+
T Consensus 143 lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 219 (474)
T 4abn_A 143 LGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYIL 219 (474)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 9999999999999999999999986 4468899999999999 99999999999999875 4578899999
Q ss_pred HHHHHhc--------CChHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH
Q 003315 247 IKALCKK--------GSMQEAVEVFLEMEKAGVT---PNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTV 315 (831)
Q Consensus 247 ~~~~~~~--------g~~~~A~~~~~~m~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 315 (831)
...|... |++++|++.|+++.+.. + .+...+..+..+|...|++++|.+.|++..+.. |.+...+..
T Consensus 220 g~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~ 297 (474)
T 4abn_A 220 GNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQR 297 (474)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 9999998 99999999999999863 2 478899999999999999999999999999886 667888999
Q ss_pred HHHHHHhcCCHhHHHHHHHHH
Q 003315 316 VIRWFCDQNKLEKAECVLLHM 336 (831)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~ 336 (831)
+...+...|++++|.+.+.++
T Consensus 298 l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 298 EQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 999999999999988766443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.3e-12 Score=128.86 Aligned_cols=176 Identities=12% Similarity=0.052 Sum_probs=134.9
Q ss_pred CChHHHHHHHHhccCChhHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhH
Q 003315 82 LNTREVVEKLYSLRKEPKIALSFFEQLKRS-------GFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEA 154 (831)
Q Consensus 82 ~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 154 (831)
......++..+...|+++.|+.+|+.+.+. .......++..++.++...|++++|...+.+++....
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------ 100 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE------ 100 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH------
Confidence 344555667778889999999999998741 2233567788999999999999999999998876521
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc------C-CCcChhhHHHHHHHHHHcCChhHHHHH
Q 003315 155 TDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR------G-FVWSICSCNYFMNQLVECGKVDMALAV 227 (831)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 227 (831)
.....+.+....++..++..|...|++++|+..|+++.+. + .+....++..+...+...|++++|...
T Consensus 101 -----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 175 (311)
T 3nf1_A 101 -----KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYY 175 (311)
T ss_dssp -----HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred -----HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1111223345678899999999999999999999998765 2 123455678888899999999999999
Q ss_pred HHHHHhc------CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 228 YQHLKRL------GLSL-NEYTYVIVIKALCKKGSMQEAVEVFLEMEK 268 (831)
Q Consensus 228 ~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 268 (831)
|++..+. +..| ...++..+...+...|++++|.+.++++.+
T Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 176 YQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9988764 1112 345778888889999999999999998875
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-11 Score=124.01 Aligned_cols=244 Identities=11% Similarity=-0.056 Sum_probs=176.8
Q ss_pred CCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-------CCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc---
Q 003315 165 GSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR-------GFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL--- 234 (831)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 234 (831)
+.+....++..++..+...|++++|+..|+++++. ..+....++..+...+...|++++|...|++..+.
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34556788999999999999999999999998874 33445677888999999999999999999998764
Q ss_pred ---CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003315 235 ---GL-SLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKA------GVTP-NAFAYSTCIEGLCMNGMLDLGYELLLKWEE 303 (831)
Q Consensus 235 ---~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (831)
+. +.....+..+...+...|++++|++.|+++.+. +..| ...++..+...+...|++++|...++++.+
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 21 223567888999999999999999999998864 2222 345788888999999999999999999887
Q ss_pred C------C-CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC-------CCCC-------HHHHHHHHHHHHhcCChH
Q 003315 304 A------D-IPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQG-------VVPD-------VYAYSALISGYCKFGKIN 362 (831)
Q Consensus 304 ~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~p~-------~~~~~~li~~~~~~~~~~ 362 (831)
. + .+....++..++..+...|++++|.+.++++.+.. ..+. ...+..+...+...+.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFG 261 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHH
Confidence 4 1 23345678899999999999999999999988631 1111 112222333444556666
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003315 363 KALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDM 409 (831)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 409 (831)
++...++...... .....++..+...+...|++++|.+.+++..+.
T Consensus 262 ~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 262 EYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp CCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6666776665432 224567788889999999999999999987754
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.4e-11 Score=124.32 Aligned_cols=224 Identities=7% Similarity=-0.093 Sum_probs=137.5
Q ss_pred HHcCChhHHHHHHHHHHHcC--C--CcChhhHHHHHHH--HHHcCChhHHH-----------HHHHHHHhcCCCCChhh-
Q 003315 181 VSVGMFDEGIDILFQINRRG--F--VWSICSCNYFMNQ--LVECGKVDMAL-----------AVYQHLKRLGLSLNEYT- 242 (831)
Q Consensus 181 ~~~~~~~~A~~~~~~~~~~~--~--~~~~~~~~~l~~~--~~~~~~~~~A~-----------~~~~~~~~~~~~~~~~~- 242 (831)
.+.+++++|..+++.+.+.- . .++...|-.++.. ..-.+..+.+. ..++.+.... .+...
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~~ 100 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTGL 100 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchhH
Confidence 67899999999999886542 1 2223333333221 12223344444 6666665421 12122
Q ss_pred -----HHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCC---
Q 003315 243 -----YVIVIKALCKKGSMQEAVEVFLEMEKA----GVTP-NAFAYSTCIEGLCMNGMLDLGYELLLKWEEA--DIP--- 307 (831)
Q Consensus 243 -----~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~--- 307 (831)
+......+...|++++|++.|+++.+. +-.+ ...++..+...+...|++++|...+++..+. ..+
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 223566677889999999999998764 1111 2357788888888999999999988887764 111
Q ss_pred -CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-
Q 003315 308 -LSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVV-PD----VYAYSALISGYCKFGKINKALLLHHEMTSK----GI- 376 (831)
Q Consensus 308 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~- 376 (831)
....+++.+...|...|++++|...|++..+.... ++ ..++..+..+|...|++++|+..+++..+. +.
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 12356777888888888888888888877653110 11 235667778888888888888888777652 11
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 003315 377 KTNCGVLSVILKGLCQKGMASATIKQFLEF 406 (831)
Q Consensus 377 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 406 (831)
.....++..+...+...|++++|...+++.
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 222334444455555555555555555444
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=5.5e-11 Score=133.37 Aligned_cols=168 Identities=12% Similarity=0.002 Sum_probs=148.3
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIV 246 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 246 (831)
+-++.+++.|+.+|.+.|++++|+..|+++++..+. +..+++.+..+|.+.|++++|+..|++.++.. +.+...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 446789999999999999999999999999998755 78899999999999999999999999999865 4567899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKL 326 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 326 (831)
...+.+.|++++|++.|+++++.. +-+..++..+..+|...|++++|++.|++.++.+ |.+...+..++..+...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 999999999999999999998864 3457788999999999999999999999998875 66788899999999999999
Q ss_pred hHHHHHHHHHHH
Q 003315 327 EKAECVLLHMEK 338 (831)
Q Consensus 327 ~~A~~~~~~~~~ 338 (831)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888888765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-10 Score=120.91 Aligned_cols=200 Identities=7% Similarity=-0.105 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCc-ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC-C-----Ch
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRR----GFVW-SICSCNYFMNQLVECGKVDMALAVYQHLKRLGLS-L-----NE 240 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-----~~ 240 (831)
.+...+..+...|++++|+..|+++.+. +..+ ...++..++..+...|++++|...+++..+.... + ..
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 3445788889999999999999998864 2111 3467888999999999999999999887753111 1 13
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCh
Q 003315 241 YTYVIVIKALCKKGSMQEAVEVFLEMEKAGV-TPN----AFAYSTCIEGLCMNGMLDLGYELLLKWEE-----ADIPLSA 310 (831)
Q Consensus 241 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~ 310 (831)
.+++.+...|...|++++|++.|+++.+... .++ ..++..+..+|...|++++|...+++..+ .+.+...
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 4678888889999999999999988875310 111 23677788888888888888888888776 2224446
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC---CC-CHHHHHHHHHHHHhcCC---hHHHHHHHHHH
Q 003315 311 FAYTVVIRWFCDQNKLEKAECVLLHMEKQGV---VP-DVYAYSALISGYCKFGK---INKALLLHHEM 371 (831)
Q Consensus 311 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p-~~~~~~~li~~~~~~~~---~~~A~~~~~~~ 371 (831)
.++..+...+.+.|++++|...+++..+... .| ....+..+...|...|+ +++|+.++++.
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 6778888888888888888888887765310 11 11224556666667777 55555555543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.31 E-value=1e-09 Score=115.13 Aligned_cols=204 Identities=13% Similarity=-0.011 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChh----hHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCCh----h
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSIC----SCNYFMNQLVECGKVDMALAVYQHLKRLGL-SLNE----Y 241 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----~ 241 (831)
.+....+..+...|++++|+..+++++...+..+.. +++.+...+...|++++|...+++...... ..+. .
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 455567778889999999999999988865433332 466677888899999999999988775311 1122 2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC----CCh
Q 003315 242 TYVIVIKALCKKGSMQEAVEVFLEMEKA----GVT--P-NAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIP----LSA 310 (831)
Q Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~--p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~ 310 (831)
++..+...+...|++++|.+.+++..+. +.. | ...++..+...+...|++++|...+++..+.... ...
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 3566777888999999999999988653 211 2 2345666778888999999999999888764211 123
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 311 FAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPD--VYAYS----ALISGYCKFGKINKALLLHHEMTSK 374 (831)
Q Consensus 311 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~----~li~~~~~~~~~~~A~~~~~~~~~~ 374 (831)
.++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++....
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 4677788888888999999988888765311111 11111 2334467888888888888877654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.4e-10 Score=110.42 Aligned_cols=196 Identities=11% Similarity=-0.069 Sum_probs=157.9
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
++..+...+..+...|++++|+..|+++++..+.++...+..+..++...|++++|+..|++..+.. +.+...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 5678899999999999999999999999998864677888889999999999999999999999864 446678999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--ChhhHHHHHHH
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNA-------FAYSTCIEGLCMNGMLDLGYELLLKWEEADIPL--SAFAYTVVIRW 319 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 319 (831)
.+...|++++|++.|++..+.. +.+. .+|..+...+...|++++|...|+++++.+ |. +...+..+...
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHH
Confidence 9999999999999999999863 2334 457888888999999999999999999875 55 56788888888
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003315 320 FCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKG 375 (831)
Q Consensus 320 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 375 (831)
|...| ...++++...+.. +...|.... ....+.+++|+..+++..+..
T Consensus 163 ~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 86654 3445565554322 444554443 334567899999999998764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.2e-10 Score=106.42 Aligned_cols=167 Identities=11% Similarity=-0.021 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
....+..++..+...|++++|+..++++.+..+. +..++..++..+...|++++|...++++.+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 84 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3456777888888888888888888888776533 67777888888888888888888888877653 446677777777
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhH
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEK 328 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 328 (831)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888877653 3455666666667777777777777777766653 4455666666666666666666
Q ss_pred HHHHHHHHHHC
Q 003315 329 AECVLLHMEKQ 339 (831)
Q Consensus 329 A~~~~~~~~~~ 339 (831)
|.+.++++.+.
T Consensus 163 A~~~~~~~~~~ 173 (186)
T 3as5_A 163 ALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 66666666543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-10 Score=130.25 Aligned_cols=166 Identities=13% Similarity=0.014 Sum_probs=138.3
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
++.+++.++.++...|++++|...|+++++..|+ +..++..++.+|.+.|++++|+..|++
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-------------------~~~a~~nLg~~l~~~g~~~eA~~~~~~ 68 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-------------------FAAAHSNLASVLQQQGKLQEALMHYKE 68 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4677888888888999999999999988888554 566888889999999999999999999
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNA 275 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 275 (831)
+++.++. +..++..+..++.+.|++++|++.|++.++.. +.+...|+.+...|.+.|++++|++.|+++++.. +-+.
T Consensus 69 Al~l~P~-~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~ 145 (723)
T 4gyw_A 69 AIRISPT-FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFP 145 (723)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCH
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 8888754 77888888899999999999999998888764 4567788888888989999999999999888763 3356
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003315 276 FAYSTCIEGLCMNGMLDLGYELLLKWEE 303 (831)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (831)
..+..+..++...|++++|.+.++++++
T Consensus 146 ~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 146 DAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 7888888889999999988888877665
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-09 Score=114.88 Aligned_cols=275 Identities=11% Similarity=-0.001 Sum_probs=180.2
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 003315 86 EVVEKLYSLRKEPKIALSFFEQLKRSGFSHNLC----TYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEAL 161 (831)
Q Consensus 86 ~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (831)
.+...++...|+++.|...++.+.......++. ++..++.++...|++++|...+.+.+...+....
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------- 88 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV--------- 88 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc---------
Confidence 344566678899999999999987543233332 4556677788889999999998887775332110
Q ss_pred hcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC----CC--c-ChhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 162 CGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRG----FV--W-SICSCNYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
......++..++..+...|++++|+..++++++.. .. | ...++..+..++...|++++|...+++....
T Consensus 89 ----~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (373)
T 1hz4_A 89 ----WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV 164 (373)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 01123456788888999999999999999876542 11 1 2345566778888999999999999887754
Q ss_pred CCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHH----HHHHHHHhcCChhHHHHHHHHHHHC
Q 003315 235 GLSL----NEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPN--AFAYS----TCIEGLCMNGMLDLGYELLLKWEEA 304 (831)
Q Consensus 235 ~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (831)
.... ....+..+...+...|++++|...+++..+....++ ..... ..+..+...|++++|...+++....
T Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 165 LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp TTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred hhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 3111 134577777888888999999999988765311111 11111 2234466788888888888877654
Q ss_pred CCCCC---hhhHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 305 DIPLS---AFAYTVVIRWFCDQNKLEKAECVLLHMEKQ----GVVPDV-YAYSALISGYCKFGKINKALLLHHEMTS 373 (831)
Q Consensus 305 ~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~ 373 (831)
...+. ...+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++...
T Consensus 245 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 245 EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 32111 224566777788888888888887776542 111112 2455556667777777777777776654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.2e-10 Score=106.59 Aligned_cols=207 Identities=9% Similarity=-0.095 Sum_probs=139.2
Q ss_pred CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHH
Q 003315 115 HNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILF 194 (831)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 194 (831)
.++..+...+..+...|++++|...+.++++..++ .+..++..++.++...|++++|+..|+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~ 66 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN------------------QDSVTAYNCGVCADNIKKYKEAADYFD 66 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT------------------CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC------------------CCcHHHHHHHHHHHHhhcHHHHHHHHH
Confidence 36677777888888888888888888887776441 133456667888888888888888888
Q ss_pred HHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 195 QINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNE-------YTYVIVIKALCKKGSMQEAVEVFLEME 267 (831)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~ 267 (831)
++++.++. +..++..+..++...|++++|...|++..+.. +.+. ..|..+...+...|++++|++.|+++.
T Consensus 67 ~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 144 (228)
T 4i17_A 67 IAIKKNYN-LANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT 144 (228)
T ss_dssp HHHHTTCS-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHhCcc-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence 88877644 66677788888888888888888888877653 3344 446777777778888888888888887
Q ss_pred hCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 003315 268 KAGVTPN---AFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPD 344 (831)
Q Consensus 268 ~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 344 (831)
+. .|+ ...+..+..++...| ...++++...+ +.+...+.... ....+.+++|...|++..+..+. +
T Consensus 145 ~~--~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~ 213 (228)
T 4i17_A 145 DV--TSKKWKTDALYSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-R 213 (228)
T ss_dssp TS--SCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-C
T ss_pred hc--CCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-C
Confidence 65 444 456666666665443 33444444443 22333333332 33456678888888888876433 4
Q ss_pred HHHHHHHH
Q 003315 345 VYAYSALI 352 (831)
Q Consensus 345 ~~~~~~li 352 (831)
..+...+.
T Consensus 214 ~~~~~~l~ 221 (228)
T 4i17_A 214 TEIKQMQD 221 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-09 Score=114.87 Aligned_cols=130 Identities=9% Similarity=-0.013 Sum_probs=76.6
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-----CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CC-CCHH
Q 003315 554 YSAMINGYCKTGHTKEAFQLFMRLSNQGVL-V-----KKSSCNKLITNLLILRDNNNALKLFKTMITLN----AE-PSKS 622 (831)
Q Consensus 554 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-p~~~ 622 (831)
+..++..|...|++++|+..+.++.+.... + ...++..++.++...|++++|...++++.... .. ....
T Consensus 144 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 223 (378)
T 3q15_A 144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAI 223 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 444555555556666665555555432111 0 12344556666666666666666666655421 01 1123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003315 623 MYDKLIGALCQAEEMEQAQLVFNVLVD-----KGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQ 684 (831)
Q Consensus 623 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 684 (831)
++..++.+|...|++++|...++++++ ..+. ...++..+...|.+.|++++|...+++..+
T Consensus 224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566677777777777777777777765 3222 355667777777777777777777777765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.23 E-value=5.2e-10 Score=103.84 Aligned_cols=166 Identities=13% Similarity=0.038 Sum_probs=129.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003315 205 ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEG 284 (831)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 284 (831)
...+..++..+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3456667778888888888888888877653 4467778888888888888888888888887753 4456777778888
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003315 285 LCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKA 364 (831)
Q Consensus 285 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A 364 (831)
+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.++++.+..+. +...+..++..+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888887764 556777888888888888888888888888776433 567777888888888888888
Q ss_pred HHHHHHHHhC
Q 003315 365 LLLHHEMTSK 374 (831)
Q Consensus 365 ~~~~~~~~~~ 374 (831)
...+++..+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8888877654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.19 E-value=3e-10 Score=113.77 Aligned_cols=234 Identities=9% Similarity=-0.031 Sum_probs=163.9
Q ss_pred cCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc------C-C
Q 003315 129 CCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR------G-F 201 (831)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~-~ 201 (831)
..|++++|...+.+.++. +......+.+....++..++..|...|++++|+..|+++++. + .
T Consensus 13 ~~~~~~~A~~~~~~al~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALED-----------LEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDH 81 (283)
T ss_dssp CCSCSSSHHHHHHHHHHH-----------HHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred CCCCHHHHHHHHHHHHHH-----------HHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcc
Confidence 456666777776665553 112222233446778999999999999999999999998865 2 2
Q ss_pred CcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc------C-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC-----
Q 003315 202 VWSICSCNYFMNQLVECGKVDMALAVYQHLKRL------G-LSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKA----- 269 (831)
Q Consensus 202 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----- 269 (831)
+....++..+..++...|++++|...|++..+. . .+....++..+...+...|++++|++.|+++.+.
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 161 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRL 161 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 334667888999999999999999999998764 1 1233567888999999999999999999998875
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-------C-CCCChhhHHHHHHHHHhcCCHhHHH------HHH
Q 003315 270 -GVTP-NAFAYSTCIEGLCMNGMLDLGYELLLKWEEA-------D-IPLSAFAYTVVIRWFCDQNKLEKAE------CVL 333 (831)
Q Consensus 270 -~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~-~~~~~~~~~~l~~~~~~~g~~~~A~------~~~ 333 (831)
+..| ...++..+..++...|++++|...++++.+. . .+.....+..+...+...+....+. ..+
T Consensus 162 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (283)
T 3edt_B 162 GPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWY 241 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-----------
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 1122 3567888999999999999999999998863 1 1223334444444444433333322 222
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 334 LHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSK 374 (831)
Q Consensus 334 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 374 (831)
+..... ......++..+...|.+.|++++|...+++.++.
T Consensus 242 ~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 242 KACKVD-SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp -CCCCC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222111 1113457888999999999999999999988754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-09 Score=113.55 Aligned_cols=236 Identities=11% Similarity=-0.020 Sum_probs=156.1
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 003315 87 VVEKLYSLRKEPKIALSFFEQLKRSG-FSH----NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEAL 161 (831)
Q Consensus 87 ~~~~l~~~~~~~~~A~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (831)
..+..+...|+++.|+.+|+.+.+.. ..+ ...++..++.++...|+++.|...+.+.++..+.....
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-------- 177 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY-------- 177 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--------
Confidence 34566678899999999999987421 112 35678889999999999999999999988764321100
Q ss_pred hcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC----CC-cChhhHHHHHHHHHHcCChhHHHHHHHHHHh---
Q 003315 162 CGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRG----FV-WSICSCNYFMNQLVECGKVDMALAVYQHLKR--- 233 (831)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--- 233 (831)
......++..++..|...|++++|+..|+++++.. .. ....+++.++.++...|++++|...|++..+
T Consensus 178 ----~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 253 (378)
T 3q15_A 178 ----SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR 253 (378)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ----hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 01245688899999999999999999999987641 11 1234677788888888999999988888776
Q ss_pred --cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---C-CHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHC
Q 003315 234 --LGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVT---P-NAFAYSTCIEGLCMNGM---LDLGYELLLKWEEA 304 (831)
Q Consensus 234 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~---p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~ 304 (831)
.. +....++..+...+.+.|++++|...+++..+.... | ....+..+...+...++ +.+|...+++. .
T Consensus 254 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~--~ 330 (378)
T 3q15_A 254 EKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK--N 330 (378)
T ss_dssp HHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT--T
T ss_pred hhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC--C
Confidence 32 233567777888888888888888888887764211 1 12234444445555565 44454444431 1
Q ss_pred CCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 003315 305 DIPLSAFAYTVVIRWFCDQNKLEKAECVLLHME 337 (831)
Q Consensus 305 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 337 (831)
..+.....+..++..|...|++++|...|++..
T Consensus 331 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 331 LHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 111122344455555556666666655555554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-09 Score=108.58 Aligned_cols=235 Identities=12% Similarity=-0.003 Sum_probs=164.6
Q ss_pred ccCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCC
Q 003315 94 LRKEPKIALSFFEQLKR-------SGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGS 166 (831)
Q Consensus 94 ~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (831)
..|+++.|+.+|+++.+ .+.+....++..++.++...|++++|...+.++++... ...+.+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----------~~~~~~~ 81 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIRE-----------KTLGKDH 81 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------HHTCTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH-----------HHcCCcc
Confidence 35677777777776652 22233577888999999999999999999999877521 1111223
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-------CCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc-----
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRG-------FVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL----- 234 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 234 (831)
+....++..++..|...|++++|+..|+++++.. .+....++..+...+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 161 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRL 161 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 4467789999999999999999999999988651 1234667888999999999999999999998864
Q ss_pred -C-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH--
Q 003315 235 -G-LSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKA-------GVTPN-AFAYSTCIEGLCMNGMLDLGYELLLKWE-- 302 (831)
Q Consensus 235 -~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~-- 302 (831)
+ .+....++..+...+...|++++|++.++++.+. ...+. ...+..+.......+....+..+.....
T Consensus 162 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (283)
T 3edt_B 162 GPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWY 241 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-----------
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 1 1223567888999999999999999999998763 11222 2234444444444343333322211111
Q ss_pred HC---CCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 303 EA---DIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 303 ~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
+. ..+....++..++..|...|++++|...|++..+.
T Consensus 242 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 242 KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11 11334567889999999999999999999998763
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.5e-09 Score=107.49 Aligned_cols=172 Identities=7% Similarity=-0.051 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCC-C----
Q 003315 622 SMYDKLIGALCQAEEMEQAQLVFNVLVDKGLT-PH----LVTYTMMIHGYCKI-NCLREARDVFNDMKQRGITP-D---- 690 (831)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~p-~---- 690 (831)
.+|..++.+|.+.|++++|...++++++.... .+ ..+++.+...|... |++++|+..|++.++..... +
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 34555566666666666666666655542100 01 23566666677764 77777777777666421000 1
Q ss_pred HHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCChHHHHHHH
Q 003315 691 VVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDV------ISYTVLIAKLCNTQNLEDGITVF 764 (831)
Q Consensus 691 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~ 764 (831)
..++..+-..+.. .+++++|+..+++..+....... ..|..++.++...|++++|++.+
T Consensus 158 ~~~~~~lg~~~~~---------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 222 (292)
T 1qqe_A 158 NKCFIKCADLKAL---------------DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222 (292)
T ss_dssp HHHHHHHHHHHHH---------------TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------------hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1223333333333 45677777777777654322211 15677888899999999999999
Q ss_pred HHHHHCCCCCCHH------HHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCHH
Q 003315 765 NEISDRGLEPDTV------TYTALLCGYL--AKGDLDRAIALVDEMSVKGIQGDDY 812 (831)
Q Consensus 765 ~~~~~~g~~pd~~------~~~~l~~~~~--~~g~~~~A~~~~~~~~~~g~~pd~~ 812 (831)
++..+ +.|+.. .+..++.+|. ..+++++|++.|+++.. +.|+..
T Consensus 223 ~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~--l~~~~~ 274 (292)
T 1qqe_A 223 QEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR--LDKWKI 274 (292)
T ss_dssp HGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC--CCHHHH
T ss_pred HHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc--cHHHHH
Confidence 99986 455422 3445666664 45778899988877765 566553
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.7e-09 Score=99.30 Aligned_cols=170 Identities=12% Similarity=-0.031 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHH----------------HHHHHHHcCChhHHHHHHHHHHhc
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNY----------------FMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
..+...+..+...|++++|+..|+++++.++. +..++.. +..++.+.|++++|...|++.++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34556777888999999999999999987643 5555655 666666677777777777666665
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCChhh
Q 003315 235 GLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGM--LDLGYELLLKWEEADIPLSAFA 312 (831)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 312 (831)
. |.++..+..+...+...|++++|++.|+++++.. +.+..++..+...|...|+ .+.+...+..... .+|....
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a 159 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA 159 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence 3 3455666666666666777777777776666653 3345556666655544432 2233333333321 1122223
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHH
Q 003315 313 YTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYA 347 (831)
Q Consensus 313 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 347 (831)
+..+..++...|++++|...|++..+. .|+...
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 333444455556666666666666654 344433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.07 E-value=5.1e-09 Score=103.39 Aligned_cols=103 Identities=5% Similarity=-0.161 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
++..+...+..+...|++++|...|..+++..|. .+..+.++..++.+|...|++++|+..|++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----------------~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 77 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT----------------HEWAADAQFYLARAYYQNKEYLLAASEYER 77 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC----------------STTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC----------------CcchHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 4555555555555666666666666655554332 111244555666666666666666666666
Q ss_pred HHHcCCC--cChhhHHHHHHHHHH--------cCChhHHHHHHHHHHhc
Q 003315 196 INRRGFV--WSICSCNYFMNQLVE--------CGKVDMALAVYQHLKRL 234 (831)
Q Consensus 196 ~~~~~~~--~~~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~ 234 (831)
+++..+. ....++..+..++.. .|++++|...|+++++.
T Consensus 78 ~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 78 FIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 5554321 112344455555555 56666666666665543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.9e-09 Score=103.51 Aligned_cols=101 Identities=11% Similarity=0.066 Sum_probs=85.0
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcC---hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-C-CChhh
Q 003315 168 LLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWS---ICSCNYFMNQLVECGKVDMALAVYQHLKRLGL-S-LNEYT 242 (831)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~-~~~~~ 242 (831)
.++..+..++..+.+.|++++|+..|+++++..+. + ..++..++.++.+.|++++|+..|+++++... . .....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 35678889999999999999999999999988644 4 66788899999999999999999999998631 1 12456
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHHHHhC
Q 003315 243 YVIVIKALCK--------KGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 243 ~~~l~~~~~~--------~g~~~~A~~~~~~m~~~ 269 (831)
+..+...+.. .|++++|+..|+++++.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 7778888888 99999999999999876
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.06 E-value=6.9e-09 Score=98.15 Aligned_cols=142 Identities=12% Similarity=0.018 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKAL 250 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (831)
.....++.+|.+.|++++|+..|+++++.++. +..++..+..++...|++++|+..|++.++.. |.++.+|..+...|
T Consensus 55 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 55 KLATELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 34445999999999999999999999999855 88899999999999999999999999999875 55778899888888
Q ss_pred HhcCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 003315 251 CKKGS--MQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIR 318 (831)
Q Consensus 251 ~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 318 (831)
...|+ .+.+...++.... ..|....+.....++...|++++|...|++.++.. |+......+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~--P~~~~~~~l~~ 198 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF--PSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS--CCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 76654 4556666666542 23334445556667778899999999999999864 55544444433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-07 Score=92.47 Aligned_cols=179 Identities=9% Similarity=-0.026 Sum_probs=85.2
Q ss_pred HHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 189 GIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGL-SLNEYTYVIVIKALCKKGSMQEAVEVFLEME 267 (831)
Q Consensus 189 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 267 (831)
|+..+++.+..+ .++..+...++.++...|++++|++++.+.+..+. ..+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555554443 22333444555555556666666666655544331 1234455555555666666666666666665
Q ss_pred hCCCCC-----CHHHHHHHHHH--HHhcC--ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 003315 268 KAGVTP-----NAFAYSTCIEG--LCMNG--MLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEK 338 (831)
Q Consensus 268 ~~~~~p-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 338 (831)
+. .| +..+...++.+ ....| ++++|..+|+++.+. .|+......+..++.+.|++++|++.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 34 23333334333 22222 556666666665443 22212222233355556666666666654443
Q ss_pred CC-----C----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 339 QG-----V----VPDVYAYSALISGYCKFGKINKALLLHHEMTSK 374 (831)
Q Consensus 339 ~~-----~----~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 374 (831)
.- - ..|..+...+|......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 20 0 1134444334444444454 555566665554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.04 E-value=4e-09 Score=119.30 Aligned_cols=174 Identities=9% Similarity=-0.094 Sum_probs=111.9
Q ss_pred HcCCChhhHHHHHHHHH--------HhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 003315 128 CCCGWQKKLESMLLELV--------RKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR 199 (831)
Q Consensus 128 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 199 (831)
...|++++|.+.+.+++ +..+. +..++..++.+|...|++++|+..|+++++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-------------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 462 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE-------------------SVELPLMEVRALLDLGDVAKATRKLDDLAER 462 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT-------------------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc-------------------chhHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Confidence 55666777777777666 33222 3446667777777777777777777777766
Q ss_pred CCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 003315 200 GFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYS 279 (831)
Q Consensus 200 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 279 (831)
++. +..++..+..++...|++++|+..|++.++.. +.+...|..+...+.+.|++++ ++.|+++.+.+ +.+...+.
T Consensus 463 ~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~ 538 (681)
T 2pzi_A 463 VGW-RWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAF 538 (681)
T ss_dssp HCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHH
T ss_pred Ccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHH
Confidence 533 66667777777777777777777777776653 3355666677777777777777 77777776653 33455667
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 003315 280 TCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNK 325 (831)
Q Consensus 280 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 325 (831)
.+..++.+.|++++|...|+++.+.+ |.+...+..+..++...++
T Consensus 539 ~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 539 GLARARSAEGDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHcCCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 77777777777777777777766654 4445666666666655443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.2e-07 Score=92.08 Aligned_cols=217 Identities=9% Similarity=-0.035 Sum_probs=157.8
Q ss_pred hhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHcCCCcChhhHHHH
Q 003315 134 KKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVG--MFDEGIDILFQINRRGFVWSICSCNYF 211 (831)
Q Consensus 134 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l 211 (831)
++|+.++..++..+|+ ...+|+.-..++...| ++++++..++.++..++. +..+++..
T Consensus 50 ~~aL~~t~~~L~~nP~-------------------~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R 109 (306)
T 3dra_A 50 ERALHITELGINELAS-------------------HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYR 109 (306)
T ss_dssp HHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHH
T ss_pred HHHHHHHHHHHHHCcH-------------------HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHH
Confidence 4566677777777554 4557777777777777 888888888888888765 66677777
Q ss_pred HHHH----HHc---CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHH
Q 003315 212 MNQL----VEC---GKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQ--EAVEVFLEMEKAGVTPNAFAYSTCI 282 (831)
Q Consensus 212 ~~~~----~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~l~ 282 (831)
..++ ... +++++++.+++.+++.. +.|..+|+--...+.+.|+++ ++++.++++.+.. +-|..+|+...
T Consensus 110 ~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~ 187 (306)
T 3dra_A 110 QLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRF 187 (306)
T ss_dssp HHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 6666 555 67888888888888764 557778877777777788877 8888888888765 44667777777
Q ss_pred HHHHhcCC------hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH-hHHHHHHHHHHHCC--CCCCHHHHHHHHH
Q 003315 283 EGLCMNGM------LDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKL-EKAECVLLHMEKQG--VVPDVYAYSALIS 353 (831)
Q Consensus 283 ~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~--~~p~~~~~~~li~ 353 (831)
.++...+. ++++++.+.+++..+ |.|...|+.+...+.+.|+. +++..+.+++.+.+ -..+...+..++.
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~ 266 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAK 266 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHH
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 66666665 777888888887775 66777887777777777764 33455666555432 1236677777888
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 003315 354 GYCKFGKINKALLLHHEMTS 373 (831)
Q Consensus 354 ~~~~~~~~~~A~~~~~~~~~ 373 (831)
+|.+.|+.++|++.++.+.+
T Consensus 267 ~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 267 IYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHh
Confidence 88888888888888888765
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.1e-09 Score=121.59 Aligned_cols=174 Identities=11% Similarity=-0.131 Sum_probs=130.6
Q ss_pred HHcCChhHHHHHHHHHH--------HcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003315 181 VSVGMFDEGIDILFQIN--------RRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK 252 (831)
Q Consensus 181 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (831)
...|++++|++.+++++ +..+ .+...+..+..++...|++++|+..|++.++.. +.+...|..+...+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67788888888888887 5543 366777888888888888888888888888754 4566788888888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHH
Q 003315 253 KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECV 332 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 332 (831)
.|++++|++.|+++.+.. +.+...+..+..++.+.|++++ .+.|+++++.+ |.+...+..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888888763 3356677788888888888888 88888888775 66777888888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003315 333 LLHMEKQGVVPDVYAYSALISGYCKFGK 360 (831)
Q Consensus 333 ~~~~~~~~~~p~~~~~~~li~~~~~~~~ 360 (831)
|++..+.++. +...+..+..++...++
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 8888775332 35566666666655444
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.5e-08 Score=101.80 Aligned_cols=167 Identities=10% Similarity=-0.082 Sum_probs=86.7
Q ss_pred HHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCc
Q 003315 124 VRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVW 203 (831)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 203 (831)
+.++...|++++|...+.+.++..+... +......++..++.+|...|++++|+..|+++++.....
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~ 110 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAG-------------NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR 110 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTT-------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhC-------------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 3355667777777777777665422100 001124567777777777777777777777766532110
Q ss_pred -C----hhhHHHHHHHHHHc-CChhHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 003315 204 -S----ICSCNYFMNQLVEC-GKVDMALAVYQHLKRLGLS-LN----EYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVT 272 (831)
Q Consensus 204 -~----~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 272 (831)
+ ..+++.+..+|... |++++|+..|++.++.... .+ ..++..+...+.+.|++++|+..|+++.+....
T Consensus 111 g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 1 23455555566654 6666666666655542100 00 234555555555566666666666555553211
Q ss_pred CCH------HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003315 273 PNA------FAYSTCIEGLCMNGMLDLGYELLLKWEE 303 (831)
Q Consensus 273 p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (831)
... .++..+..++...|++++|...+++.++
T Consensus 191 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 191 NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred CCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 111 0234444445555555555555555443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-09 Score=96.25 Aligned_cols=146 Identities=12% Similarity=-0.006 Sum_probs=102.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 003315 176 MIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGS 255 (831)
Q Consensus 176 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 255 (831)
|+..+...|++++|+..++++....+. +...+..+..+|.+.|++++|+..|++.++.. |.++.+|..+...|.+.|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 555666777888888888887765432 45556677888888888888888888887764 4567788888888888888
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH-HHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 003315 256 MQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYEL-LLKWEEADIPLSAFAYTVVIRWFCDQNK 325 (831)
Q Consensus 256 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 325 (831)
+++|+..|+++.+.. +-+..++..+...|.+.|+++++.+. +++.++.. |.++.+|....+.+...|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 888888888887763 33566777777778888877665544 46676664 5566777766666666654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.2e-09 Score=95.31 Aligned_cols=144 Identities=6% Similarity=-0.076 Sum_probs=67.5
Q ss_pred HHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcc
Q 003315 89 EKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTL 168 (831)
Q Consensus 89 ~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (831)
+.++..+|+++.|+..|..+.... +.++..+..++.++...|++++|...+.++++..|.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~------------------- 63 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER------------------- 63 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------------
Confidence 344445555566666555554321 112333444555555555555555555555554332
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHH-HHHHHhcCCCCChhhHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAV-YQHLKRLGLSLNEYTYVIVI 247 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~~~~l~ 247 (831)
++.+|..++.+|...|++++|+..|+++++.++. +..++..+..++.+.|++++|... +++..+.. |.++.+|....
T Consensus 64 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~ 141 (150)
T 4ga2_A 64 DPKAHRFLGLLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKE 141 (150)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 3345555555555555555555555555554432 444555555555555555443333 24444432 23344444444
Q ss_pred HHHHhcC
Q 003315 248 KALCKKG 254 (831)
Q Consensus 248 ~~~~~~g 254 (831)
..+...|
T Consensus 142 ~ll~~~G 148 (150)
T 4ga2_A 142 QLLDCEG 148 (150)
T ss_dssp HHHHTCC
T ss_pred HHHHHhC
Confidence 4444333
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.98 E-value=3.8e-08 Score=94.41 Aligned_cols=188 Identities=11% Similarity=0.001 Sum_probs=129.8
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcC--hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChh---hH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWS--ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEY---TY 243 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~ 243 (831)
++..+..++..+.+.|++++|+..|+++++..+... ..++..++.++.+.|++++|+..|+++++.. |.+.. .+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 455777889999999999999999999998754422 3567888999999999999999999999764 22222 45
Q ss_pred HHHHHHHHh------------------cCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003315 244 VIVIKALCK------------------KGSMQEAVEVFLEMEKAGVTPNAF-AYSTCIEGLCMNGMLDLGYELLLKWEEA 304 (831)
Q Consensus 244 ~~l~~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (831)
..+...+.+ .|++++|+..|+++++. .|+.. +........ .+...+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~----------~~~~~~--- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV----------FLKDRL--- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH----------HHHHHH---
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH----------HHHHHH---
Confidence 555555544 45677777777777764 33322 111111000 000000
Q ss_pred CCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 003315 305 DIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPD--VYAYSALISGYCKFGKINKALLLHHEMTSKGIK 377 (831)
Q Consensus 305 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 377 (831)
......+...|.+.|++++|...|+++.+..+... ...+..+..+|.+.|++++|++.++.+...++.
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01124567888899999999999999988643311 246778889999999999999999988876543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.97 E-value=4.2e-08 Score=94.11 Aligned_cols=190 Identities=11% Similarity=-0.088 Sum_probs=126.7
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
++..+...+..+...|++++|...|..+++..|. .+..+.++..++.+|.+.|++++|+..|++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~----------------~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 66 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPF----------------GPYSQQVQLDLIYAYYKNADLPLAQAAIDR 66 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------------STTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4566677777888888888888888888877443 122345777888888888999999999888
Q ss_pred HHHcCCCcCh--hhHHHHHHHHHH------------------cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 003315 196 INRRGFVWSI--CSCNYFMNQLVE------------------CGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGS 255 (831)
Q Consensus 196 ~~~~~~~~~~--~~~~~l~~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 255 (831)
+++..+.... .++..+..++.. .|++++|...|+++++.. |.+...+.......
T Consensus 67 ~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----- 140 (225)
T 2yhc_A 67 FIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----- 140 (225)
T ss_dssp HHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH-----
T ss_pred HHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH-----
Confidence 8887644211 244445555543 578999999999998753 33333333221110
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCCHhHHHHH
Q 003315 256 MQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSA---FAYTVVIRWFCDQNKLEKAECV 332 (831)
Q Consensus 256 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~ 332 (831)
.+...+. .....+...+.+.|++++|...|+++++.. |.++ ..+..++.++.+.|++++|.+.
T Consensus 141 -----~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~ 206 (225)
T 2yhc_A 141 -----FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKV 206 (225)
T ss_dssp -----HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHH
Confidence 0001110 112345667778888888888888888763 3332 5677788888888888888888
Q ss_pred HHHHHHCCC
Q 003315 333 LLHMEKQGV 341 (831)
Q Consensus 333 ~~~~~~~~~ 341 (831)
++.+...++
T Consensus 207 ~~~l~~~~~ 215 (225)
T 2yhc_A 207 AKIIAANSS 215 (225)
T ss_dssp HHHHHHCCS
T ss_pred HHHHHhhCC
Confidence 888877643
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.97 E-value=9.5e-07 Score=95.02 Aligned_cols=390 Identities=13% Similarity=0.018 Sum_probs=199.4
Q ss_pred HcC-ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHH
Q 003315 217 ECG-KVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGM-LDLG 294 (831)
Q Consensus 217 ~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a 294 (831)
+.| +.+.|..+|+.++..- |. |+++.+..+|++.+.. .|+...|...+.-..+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 3778888888887631 33 8899999999998875 5788888888777666653 3556
Q ss_pred HHHHHHHHHC-C-CCCChhhHHHHHHHHH----hcCCHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHH
Q 003315 295 YELLLKWEEA-D-IPLSAFAYTVVIRWFC----DQNKLEKAECVLLHMEKQGVVPDVY-AYSALISGYCKFGKINKALLL 367 (831)
Q Consensus 295 ~~~~~~~~~~-~-~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~A~~~ 367 (831)
..+|+..+.. | .+.+...|...+..+. ..++++.+.++|++.+... ..+.. .|...... -+......+..+
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P-~~~~~~lw~~Y~~f-E~~~~~~~~~~~ 145 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP-MGSLSELWKDFENF-ELELNKITGKKI 145 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC-CTTHHHHHHHHHHH-HHHHCHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHH-HHHhccccHHHH
Confidence 6777777654 3 2446677777777654 2456777888888887631 11211 11111111 111111122222
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcC--C-----HHHHHHHHHH
Q 003315 368 HHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLG--E-----VEKAMILFKE 440 (831)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~A~~~~~~ 440 (831)
+.+.. +.+..|..++..+...-...+...|...++.-...+ - .+.+..+|++
T Consensus 146 ~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~ 204 (493)
T 2uy1_A 146 VGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNY 204 (493)
T ss_dssp HHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHH
Confidence 22111 112223333333221100012223333333221110 0 1233445555
Q ss_pred HHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003315 441 MKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNF 520 (831)
Q Consensus 441 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 520 (831)
+... .+.+...|...+..+.+.|+++.|..++++.... |....+.. .|....+.++. ++.+.+.
T Consensus 205 al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~------ 268 (493)
T 2uy1_A 205 ILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRK------ 268 (493)
T ss_dssp HHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHH------
T ss_pred HHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHH------
Confidence 4442 1223445555555555555555666666555554 22221111 11111111111 1111110
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc-
Q 003315 521 VTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLIL- 599 (831)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 599 (831)
+. ....+.+.. .........|...+....+.+..+.|..+|.++ .. +..+...+...+..-...
T Consensus 269 ---------~~-~~~~~~~~~---~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 269 ---------YS-MGEAESAEK---VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp ---------TC--------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHH
T ss_pred ---------HH-hhccchhhh---hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHC
Confidence 00 000000000 000000011444455555667788899999888 32 222333333222222233
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 003315 600 RDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVF 679 (831)
Q Consensus 600 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 679 (831)
++.+.|..+++.+.+.. +-+...+...++...+.|+.+.|+.+|+.+.+ ....|...+..-...|+.+.+..++
T Consensus 334 ~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~ 407 (493)
T 2uy1_A 334 GSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELV 407 (493)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 36999999999998753 33455666778888899999999999999732 6788998888888899999999999
Q ss_pred HHHHH
Q 003315 680 NDMKQ 684 (831)
Q Consensus 680 ~~m~~ 684 (831)
+++.+
T Consensus 408 ~~~~~ 412 (493)
T 2uy1_A 408 DQKMD 412 (493)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88874
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.96 E-value=3e-08 Score=86.06 Aligned_cols=130 Identities=21% Similarity=0.150 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC 251 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (831)
++..++..+...|++++|+..++++.+.++. +..++..++..+...|++++|...|+++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 4556677777777777777777777766533 55666666777777777777777777766543 344556666666666
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003315 252 KKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEA 304 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (831)
..|++++|.+.++++.+.. +.+..++..++..+...|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777666542 234445555555566666666666665555543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.9e-07 Score=89.56 Aligned_cols=188 Identities=7% Similarity=-0.068 Sum_probs=143.7
Q ss_pred HHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCCCChhhHHHHHHHH----Hhc-
Q 003315 181 VSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECG--KVDMALAVYQHLKRLGLSLNEYTYVIVIKAL----CKK- 253 (831)
Q Consensus 181 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~- 253 (831)
.+....++|+..+++++..++. +..+++.-..++...+ +++++++.++.++... +.+..+|+.-...+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence 3334457999999999999865 7788999999999888 9999999999999865 45666777665555 455
Q ss_pred --CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC----
Q 003315 254 --GSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLD--LGYELLLKWEEADIPLSAFAYTVVIRWFCDQNK---- 325 (831)
Q Consensus 254 --g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 325 (831)
++++++++.++++.+.. +-+..+|+.-.-++.+.|.++ ++++.++++++.+ +-|..+|+.....+...++
T Consensus 122 ~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 78899999999998864 457778888877788888888 8889999998876 5677777777776666666
Q ss_pred --HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHh
Q 003315 326 --LEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINK-ALLLHHEMTS 373 (831)
Q Consensus 326 --~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~-A~~~~~~~~~ 373 (831)
++++.+.++.++...+. |...|+-+...+.+.|+... +.++..++.+
T Consensus 200 ~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~ 249 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVD 249 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEE
T ss_pred hhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 78888888888877655 77788877777777776433 4445555543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.9e-08 Score=86.09 Aligned_cols=127 Identities=21% Similarity=0.157 Sum_probs=55.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003315 208 CNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCM 287 (831)
Q Consensus 208 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 287 (831)
+..++..+...|++++|..+|+++.+.. +.+...+..++..+...|++++|.+.++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3444444555555555555555544432 2234444444444445555555555555544432 2233334444444444
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 003315 288 NGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHME 337 (831)
Q Consensus 288 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 337 (831)
.|++++|...++++.+.. +.+...+..++..+...|++++|.+.++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 444444444444444332 2233333444444444444444444444433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.94 E-value=8.5e-09 Score=94.56 Aligned_cols=62 Identities=6% Similarity=-0.099 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 003315 275 AFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPL-SAFAYTVVIRWFCDQNKLEKAECVLLHM 336 (831)
Q Consensus 275 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 336 (831)
...+..+..++...|++++|...|+++++.+..+ +...+..++..+...|+.++|...|++.
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 3344444444444444444444444444432111 1234444444444444444444444443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2e-08 Score=100.28 Aligned_cols=164 Identities=9% Similarity=-0.020 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHH-HH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVI-VI 247 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-l~ 247 (831)
+...+..++..+.+.|++++|+..|+++++..+. +..++..+..++.+.|++++|...++++.... |+...... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 4456667777788888888888888888777644 66777777888888888888888888776543 44332222 22
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCC
Q 003315 248 KALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLS--AFAYTVVIRWFCDQNK 325 (831)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 325 (831)
..+.+.++.++|++.++++.+.. +.+...+..+...+...|++++|...|+++++.+ |.+ ...+..++..+...|+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCC
Confidence 23556677777777777777653 3455667777777777777777777777777654 222 5566677777777777
Q ss_pred HhHHHHHHHHHH
Q 003315 326 LEKAECVLLHME 337 (831)
Q Consensus 326 ~~~A~~~~~~~~ 337 (831)
.++|...+++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 777766666544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-07 Score=92.00 Aligned_cols=246 Identities=12% Similarity=0.052 Sum_probs=127.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHH
Q 003315 250 LCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKA 329 (831)
Q Consensus 250 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 329 (831)
..-.|.+..++.-..++.. ......-..+.+++...|+++.. ..-.|....+..+...+ .. .|
T Consensus 23 ~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~----~a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DT----KN 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TT----TC
T ss_pred HHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-cc----cH
Confidence 3356777777763332211 12222333344666666665531 01122222333333332 21 15
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003315 330 ECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDM 409 (831)
Q Consensus 330 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 409 (831)
...|+++.+.+ .++..++..+..++...|++++|++++.+.+..+..+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~------------------------------- 133 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAE------------------------------- 133 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCST-------------------------------
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc-------------------------------
Confidence 55566555443 2344444556666666666666666666655443211
Q ss_pred CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----ChhhHHHHHHH--HHccC--ChhhHHHHHHHHHHcC
Q 003315 410 GFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVP-----DVVNYTTMICG--YCLQG--KLGDALDLFKEMKEMG 480 (831)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~~~~~~ 480 (831)
-+...+..++..+.+.|+.+.|.+.+++|.+. .| +..+...++.+ ....| ++.+|..+|+++.+..
T Consensus 134 ---~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~ 208 (310)
T 3mv2_B 134 ---GTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF 208 (310)
T ss_dssp ---THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS
T ss_pred ---CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC
Confidence 13445556666677777777777777776653 23 13344444444 22223 6777777777765542
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC
Q 003315 481 HKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRH-----G----LEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCL 551 (831)
Q Consensus 481 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 551 (831)
|+..+...++.++.+.|++++|.+.++.+.+. + -+.++.++..+|......|+ +|.++++++....|
T Consensus 209 --p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 209 --PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp --CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred --CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 33222333444666777777777777765542 0 13345555444444444555 66677777766666
Q ss_pred CC
Q 003315 552 EN 553 (831)
Q Consensus 552 ~~ 553 (831)
++
T Consensus 285 ~h 286 (310)
T 3mv2_B 285 EH 286 (310)
T ss_dssp CC
T ss_pred CC
Confidence 55
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.1e-08 Score=100.12 Aligned_cols=168 Identities=11% Similarity=-0.020 Sum_probs=139.4
Q ss_pred CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHH
Q 003315 115 HNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILF 194 (831)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 194 (831)
.+...+..++..+...|++++|...+++++...|. ++.++..++..+.+.|++++|+..++
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-------------------~~~a~~~la~~~~~~g~~~~A~~~l~ 175 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-------------------NGEIGLLLAETLIALNRSEDAEAVLX 175 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-------------------CHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-------------------chhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 46677888999999999999999999999998665 56788899999999999999999999
Q ss_pred HHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C
Q 003315 195 QINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVT-P 273 (831)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p 273 (831)
++....+. ...........+.+.++.+.|...|++..+.. |.+...+..+...+...|++++|++.|+++++.... .
T Consensus 176 ~~~~~~p~-~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~ 253 (287)
T 3qou_A 176 TIPLQDQD-TRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA 253 (287)
T ss_dssp TSCGGGCS-HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG
T ss_pred hCchhhcc-hHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 99887543 22333334445677888899999999988765 567889999999999999999999999999986321 1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003315 274 NAFAYSTCIEGLCMNGMLDLGYELLLKWEE 303 (831)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 303 (831)
+...+..++..+...|+.++|...+++.+.
T Consensus 254 ~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 254 DGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp GGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 256889999999999999999999887654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-08 Score=93.41 Aligned_cols=162 Identities=14% Similarity=-0.015 Sum_probs=107.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 003315 208 CNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEG-LC 286 (831)
Q Consensus 208 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~ 286 (831)
.......+...|++++|...|++.++.. |.+...+..+...+.+.|++++|+..|+++.+.. |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4445556666666666666666655432 3345566666666666666666666666665442 233322222211 11
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 003315 287 MNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVP-DVYAYSALISGYCKFGKINKAL 365 (831)
Q Consensus 287 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~ 365 (831)
..++..+|...+++.++.+ |.+...+..+...+...|++++|...|+++.+..+.+ +...+..+..++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2223345677788877764 6678889999999999999999999999998875443 3567888888999999999999
Q ss_pred HHHHHHHh
Q 003315 366 LLHHEMTS 373 (831)
Q Consensus 366 ~~~~~~~~ 373 (831)
..|++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.91 E-value=1.8e-06 Score=92.93 Aligned_cols=357 Identities=10% Similarity=-0.045 Sum_probs=169.0
Q ss_pred CChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCC-hhHHHHHHHHHHhc-CC-CCChhhHHHHHHHHH----hcCCh
Q 003315 184 GMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGK-VDMALAVYQHLKRL-GL-SLNEYTYVIVIKALC----KKGSM 256 (831)
Q Consensus 184 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~g~~ 256 (831)
|+++.+..+|++.+.. .|++..|...+....+.+. .+....+|+..+.. |. +.+...|...+..+. ..|+.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7788999999998875 3588888888877766663 46677888887753 32 235567777766543 24667
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------------cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 003315 257 QEAVEVFLEMEKAGVTPNAFAYSTCIEGLCM-------------NGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQ 323 (831)
Q Consensus 257 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (831)
+.+.++|++++......-...|......-.. .+.+..|..+++++...--..+...|..++..-...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 8888999998874211111122222111100 011122222222222110001222333333322111
Q ss_pred CC-------HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 003315 324 NK-------LEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMA 396 (831)
Q Consensus 324 g~-------~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 396 (831)
+. .+.+..+|+++....+. +...|...+..+.+.|+.++|..++++.... |....+.. .+....+.
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~p~-~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~ 258 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSFYY-AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDE 258 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTC
T ss_pred CccCcchhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcch
Confidence 00 12334455555443222 3444544454455555555555555555544 22111110 11110000
Q ss_pred HHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHH
Q 003315 397 SATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEM 476 (831)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 476 (831)
++. ++.+.. .+.. ...+.+ .. .. .......|...+....+.++.+.|..+|+++
T Consensus 259 ~~~---~~~l~~---------------~~~~-~~~~~~-----~~-~~-~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 259 EAV---YGDLKR---------------KYSM-GEAESA-----EK-VF-SKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp THH---HHHHHH---------------HTC-----------------C-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hHH---HHHHHH---------------HHHh-hccchh-----hh-hc-ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 110 111100 0000 000000 00 00 0011234555555555667777777777777
Q ss_pred HHcCCCCCcchHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCChH
Q 003315 477 KEMGHKPDIITYNVLAGAFAQ-YGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLENYS 555 (831)
Q Consensus 477 ~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 555 (831)
.. +..+...|...+..-.. .++.+.|..+++..++.. +.+...+...++...+.|+.+.|..+|+.+.+ ....|.
T Consensus 313 -~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-~~~lw~ 388 (493)
T 2uy1_A 313 -GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-TSRMWD 388 (493)
T ss_dssp -TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-BHHHHH
T ss_pred -hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHH
Confidence 22 11222333322222122 235777888887777642 33344445556666677778888888777631 122255
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 003315 556 AMINGYCKTGHTKEAFQLFMRLSN 579 (831)
Q Consensus 556 ~l~~~~~~~g~~~~A~~~~~~~~~ 579 (831)
..+..-...|+.+.+..+++++.+
T Consensus 389 ~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 389 SMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555566787777777776653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-07 Score=89.86 Aligned_cols=176 Identities=14% Similarity=-0.008 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC----ChHHHHHHH
Q 003315 188 EGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG----SMQEAVEVF 263 (831)
Q Consensus 188 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 263 (831)
+|+..|+++.+.| ++.++..+...|...+++++|...|++..+.| ++..+..|...|.. + ++++|++.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4555666666543 55556666666666666666666666666543 45555556655555 4 666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCC-CChhhHHHHHHHHHh----cCCHhHHHHHHH
Q 003315 264 LEMEKAGVTPNAFAYSTCIEGLCM----NGMLDLGYELLLKWEEADIP-LSAFAYTVVIRWFCD----QNKLEKAECVLL 334 (831)
Q Consensus 264 ~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 334 (831)
++..+.| +..++..|...|.. .+++++|+..|++..+.+.. .++..+..|...|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6666543 44555556666655 56666666666666665411 115566666666666 566677777776
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCC
Q 003315 335 HMEKQGVVPDVYAYSALISGYCKF-G-----KINKALLLHHEMTSKG 375 (831)
Q Consensus 335 ~~~~~~~~p~~~~~~~li~~~~~~-~-----~~~~A~~~~~~~~~~~ 375 (831)
+..+.+ .+...+..|..+|... | ++++|...|+...+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 666641 2333455555555542 2 6666666666666554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.7e-07 Score=86.37 Aligned_cols=177 Identities=14% Similarity=-0.056 Sum_probs=130.6
Q ss_pred hHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChhHHHHH
Q 003315 222 DMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNG----MLDLGYEL 297 (831)
Q Consensus 222 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~ 297 (831)
.+|.+.|++..+. .++..+..+...|...+++++|++.|++..+.| +...+..|...|.. + ++++|...
T Consensus 3 ~eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 3577788888775 477888888888988999999999999998865 56777778887777 6 88999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHH
Q 003315 298 LLKWEEADIPLSAFAYTVVIRWFCD----QNKLEKAECVLLHMEKQGVV-PDVYAYSALISGYCK----FGKINKALLLH 368 (831)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~----~~~~~~A~~~~ 368 (831)
|++..+.+ ++..+..|...|.. .+++++|.+.|++..+.|.. .+...+..|...|.. .+++++|+..|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99988765 66778888888877 78899999999998887531 026777888888887 77888888888
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhc-C-----ChHHHHHHHHHHHHCC
Q 003315 369 HEMTSKGIKTNCGVLSVILKGLCQK-G-----MASATIKQFLEFKDMG 410 (831)
Q Consensus 369 ~~~~~~~~~~~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~ 410 (831)
++..+.+ .+...+..+...|... | +.++|+..|+...+.|
T Consensus 153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8887762 1233444455554432 2 5666666666555543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=5.9e-08 Score=107.89 Aligned_cols=153 Identities=9% Similarity=-0.108 Sum_probs=88.4
Q ss_pred CChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHH
Q 003315 131 GWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNY 210 (831)
Q Consensus 131 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 210 (831)
|++++|...+.++++..+. +..++..++..|...|++++|+..|+++++.++. +..++..
T Consensus 3 g~~~~A~~~~~~al~~~p~-------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 62 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-------------------DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVAR 62 (568)
T ss_dssp ------------------C-------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 4556666666665554332 3456667777777777777777777777766533 5666666
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--
Q 003315 211 FMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMN-- 288 (831)
Q Consensus 211 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-- 288 (831)
+..++...|++++|.+.|++..+.. +.+...+..+...+.+.|++++|.+.|+++.+.. +.+...+..+..++...
T Consensus 63 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~ 140 (568)
T 2vsy_A 63 LGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCD 140 (568)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhc
Confidence 7777777777777777777766653 3445666666777777777777777777766653 23455666666666666
Q ss_pred -CChhHHHHHHHHHHHCC
Q 003315 289 -GMLDLGYELLLKWEEAD 305 (831)
Q Consensus 289 -~~~~~a~~~~~~~~~~~ 305 (831)
|++++|.+.+++..+.+
T Consensus 141 ~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 141 WRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp CTTHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHhcC
Confidence 66666666666666654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=5.1e-08 Score=108.39 Aligned_cols=156 Identities=10% Similarity=-0.025 Sum_probs=114.6
Q ss_pred cCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 003315 183 VGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEV 262 (831)
Q Consensus 183 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 262 (831)
.|++++|+..|+++++..+. +..++..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47888999999998887644 67788888999999999999999999988764 45677888888899999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---CCHhHHHHHHHHHHHC
Q 003315 263 FLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQ---NKLEKAECVLLHMEKQ 339 (831)
Q Consensus 263 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 339 (831)
|++..+.. +.+...+..+..++...|++++|.+.+++..+.+ +.+...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99988764 4456788888888999999999999999988875 56778888888888888 8999999999888876
Q ss_pred CCC
Q 003315 340 GVV 342 (831)
Q Consensus 340 ~~~ 342 (831)
+..
T Consensus 158 ~p~ 160 (568)
T 2vsy_A 158 GVG 160 (568)
T ss_dssp TCC
T ss_pred CCc
Confidence 543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=3.3e-06 Score=84.36 Aligned_cols=218 Identities=11% Similarity=0.029 Sum_probs=148.8
Q ss_pred hhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHcCCCcChhhHHHH
Q 003315 133 QKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVG-MFDEGIDILFQINRRGFVWSICSCNYF 211 (831)
Q Consensus 133 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l 211 (831)
.++|+.++..++..+|. +..+|+.-..++...| .+++++..++.+++.+++ +..+++..
T Consensus 70 se~AL~lt~~~L~~nP~-------------------~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR 129 (349)
T 3q7a_A 70 SERALELTEIIVRMNPA-------------------HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHR 129 (349)
T ss_dssp SHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred CHHHHHHHHHHHHhCch-------------------hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 34566777777777554 4456777777777777 488999999998888766 77788888
Q ss_pred HHHHHHc-C-ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH--------HHHHHHHHHHhCCCCCCHHHHHHH
Q 003315 212 MNQLVEC-G-KVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQ--------EAVEVFLEMEKAGVTPNAFAYSTC 281 (831)
Q Consensus 212 ~~~~~~~-~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~l 281 (831)
..++... + ++++++++++.+++.. +.|..+|+--...+.+.|.++ ++++.++++.+.. +-|..+|+..
T Consensus 130 ~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R 207 (349)
T 3q7a_A 130 LLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWR 207 (349)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 8888776 6 7888888888888764 457777776666666666666 8888888888765 4577788887
Q ss_pred HHHHHhcCC-------hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH--------------------hHHHHHHH
Q 003315 282 IEGLCMNGM-------LDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKL--------------------EKAECVLL 334 (831)
Q Consensus 282 ~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~ 334 (831)
..++.+.+. ++++++.+.+++..+ |.|...|+.+-..+.+.|+- .+..+...
T Consensus 208 ~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (349)
T 3q7a_A 208 WYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGF 286 (349)
T ss_dssp HHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------C
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHH
Confidence 777777775 577778887777765 66777777666666665543 22222222
Q ss_pred HHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 335 HMEKQG-----VVPDVYAYSALISGYCKFGKINKALLLHHEMTS 373 (831)
Q Consensus 335 ~~~~~~-----~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 373 (831)
++...+ -.+.......|+.+|...|+.++|.++++.+.+
T Consensus 287 ~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 287 PMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 222221 024566666777777777777777777777654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.75 E-value=2e-07 Score=79.49 Aligned_cols=99 Identities=13% Similarity=0.045 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
...++...+..|.+.|++++|+..|+++++.++. +..++..+..++.+.|++++|+..|++.++.+ +.+...|..+..
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 89 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence 4567778899999999999999999999888754 78888889999999999999999999988765 456778888888
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 003315 249 ALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~ 269 (831)
++...|++++|++.|++.++.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999998876
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.4e-07 Score=92.47 Aligned_cols=160 Identities=7% Similarity=-0.008 Sum_probs=77.1
Q ss_pred cCChhHHHHHHHHHHhC---C-C--CCC----HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcC
Q 003315 95 RKEPKIALSFFEQLKRS---G-F--SHN----LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGE 164 (831)
Q Consensus 95 ~~~~~~A~~~~~~~~~~---~-~--~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (831)
.|++..|.++++++.+. + + .++ ...|..++.++...|++++|...+.+.++..+...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~------------- 70 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR------------- 70 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-------------
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-------------
Confidence 35667777777766531 1 1 122 12344445555566666666666665554422100
Q ss_pred CCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC---Cc--ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-
Q 003315 165 GSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGF---VW--SICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSL- 238 (831)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~- 238 (831)
+......++..++..|...|++++|+..|+++++... .+ ...+++.+..+|.. |++++|+..|++.++.....
T Consensus 71 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~ 149 (307)
T 2ifu_A 71 SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE 149 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC
Confidence 0011233555666666666666666666666543310 11 12334445555544 55555555555544321000
Q ss_pred C----hhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 239 N----EYTYVIVIKALCKKGSMQEAVEVFLEMEK 268 (831)
Q Consensus 239 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 268 (831)
+ ..+++.+...+.+.|++++|++.|+++.+
T Consensus 150 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 150 RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0 23444455555555555555555555443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=6.7e-06 Score=82.16 Aligned_cols=185 Identities=10% Similarity=-0.052 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcC-ChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECG-KVDMALAVYQHLKRLGLSLNEYTYVIVIKAL 250 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (831)
++..+.....+.+..++|+..+++++..++. +..+++....++...+ .+++++..++.++... +.+..+|+.-...+
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 3334444444556667999999999999866 7888999999999988 5999999999999865 56778888877777
Q ss_pred Hhc-C-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh--------HHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 003315 251 CKK-G-SMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLD--------LGYELLLKWEEADIPLSAFAYTVVIRWF 320 (831)
Q Consensus 251 ~~~-g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (831)
.+. + +++++++.++++.+.. +-|..+|+.-.-++.+.|.++ ++++.++++++.+ +-|..+|+.....+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 776 7 8999999999999865 456777777666666666666 8888899888876 66788888888777
Q ss_pred HhcCC-------HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003315 321 CDQNK-------LEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKI 361 (831)
Q Consensus 321 ~~~g~-------~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 361 (831)
.+.++ ++++.+.+++++...+. |...|+-+-..+.+.|+.
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCC
Confidence 77776 67888888888877555 777887776666665543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.1e-07 Score=89.73 Aligned_cols=199 Identities=8% Similarity=-0.094 Sum_probs=144.6
Q ss_pred cCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHH-------HHHHHHcCChhHHHHHHHHHHHcCC
Q 003315 129 CCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAM-------IKAYVSVGMFDEGIDILFQINRRGF 201 (831)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~ 201 (831)
..++..+|...|.++++.+|. ...+|..+ ...+.+.++..+++..+.+.++..+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-------------------~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p 78 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-------------------ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISM 78 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCG
T ss_pred cCCCHHHHHHHHHHHHHhChh-------------------hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 467788888888888888655 44566666 5677777778888888887766321
Q ss_pred C-----cC---------------hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 003315 202 V-----WS---------------ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVE 261 (831)
Q Consensus 202 ~-----~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (831)
. .+ ......+..++...|++++|.++|+.+...+ |+......+...+.+.|++++|+.
T Consensus 79 ~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~ 156 (282)
T 4f3v_A 79 STLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVID 156 (282)
T ss_dssp GGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHH
Confidence 1 01 1233456778889999999999999887644 443366677778889999999999
Q ss_pred HHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 003315 262 VFLEMEKAGVTPN--AFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPL--SAFAYTVVIRWFCDQNKLEKAECVLLHME 337 (831)
Q Consensus 262 ~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 337 (831)
.|+...... .|. ...+..+..++...|++++|+..|++.......| .......+..++.+.|+.++|..+|+++.
T Consensus 157 ~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 157 QVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 998665432 121 2367778888999999999999999988654313 34567778888899999999999999998
Q ss_pred HCCCCCCHHHHHHH
Q 003315 338 KQGVVPDVYAYSAL 351 (831)
Q Consensus 338 ~~~~~p~~~~~~~l 351 (831)
... |+...+..|
T Consensus 236 a~~--P~~~~~~aL 247 (282)
T 4f3v_A 236 TTH--PEPKVAAAL 247 (282)
T ss_dssp HHS--CCHHHHHHH
T ss_pred hcC--CcHHHHHHH
Confidence 863 444444333
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.3e-07 Score=93.78 Aligned_cols=200 Identities=7% Similarity=-0.091 Sum_probs=98.6
Q ss_pred cCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-----c
Q 003315 129 CCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFV-----W 203 (831)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~ 203 (831)
..|++++|.+++.+..+..+...+. + ..+...-...|...+..|...|++++|+..|.++.+.... .
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~-------~-~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 74 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMK-------W-KPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFH 74 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSS-------C-SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccC-------C-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3567778888888766653321000 0 0111112335556666677777777777777766543211 0
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC---CCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CC--
Q 003315 204 SICSCNYFMNQLVECGKVDMALAVYQHLKRLGL---SLN--EYTYVIVIKALCKKGSMQEAVEVFLEMEKAGV---TP-- 273 (831)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p-- 273 (831)
-..+++.+..+|.+.|++++|+..|++.++... .+. ..++..+...|.. |++++|++.|++..+... .+
T Consensus 75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~ 153 (307)
T 2ifu_A 75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQ 153 (307)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhH
Confidence 123555666666666666666666666543210 011 2345555555555 666666666666554210 00
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCC-hhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 003315 274 NAFAYSTCIEGLCMNGMLDLGYELLLKWEEAD----IPLS-AFAYTVVIRWFCDQNKLEKAECVLLHME 337 (831)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 337 (831)
...++..+...+...|++++|+..|++.++.. ..+. ...+..++..+...|++++|...|++..
T Consensus 154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 02344455555555555555555555554421 0000 1133334444444455555555555544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.70 E-value=2.3e-07 Score=81.63 Aligned_cols=104 Identities=10% Similarity=-0.036 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
+..++..++..+.+.|++++|+..|+++++.++. +...+..+..++...|++++|+..|++..+.. |.++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 5668888999999999999999999999988754 78888899999999999999999999988865 456778888999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNAF 276 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 276 (831)
+|.+.|++++|++.|+++++. .|+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 999999999999999998876 45543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.70 E-value=7.6e-08 Score=95.72 Aligned_cols=191 Identities=9% Similarity=-0.074 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKAL 250 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (831)
..+..++..+...|++++|+..|+++++..+. +...+..+..++.+.|++++|+..+++.++.. +.+...+..+..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 45556666666666666666666666665433 55566666666666666666666666666543 33455666666666
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHH
Q 003315 251 CKKGSMQEAVEVFLEMEKAGVTPNA-FAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKA 329 (831)
Q Consensus 251 ~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 329 (831)
...|++++|+..|+++.+.+ |+. ..+...+....+. .++.. +........+.+......+... ..|++++|
T Consensus 83 ~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 66666666666666665431 111 0011111111110 11111 1112222334444444444332 25677777
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHhc-CChHHHHHHHHHHHh
Q 003315 330 ECVLLHMEKQGVVPD-VYAYSALISGYCKF-GKINKALLLHHEMTS 373 (831)
Q Consensus 330 ~~~~~~~~~~~~~p~-~~~~~~li~~~~~~-~~~~~A~~~~~~~~~ 373 (831)
.+.++...+. .|+ ......+...+.+. +.+++|.++|.+..+
T Consensus 155 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777776665 333 33333444444444 557777777776654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.67 E-value=8.4e-08 Score=95.39 Aligned_cols=195 Identities=11% Similarity=-0.083 Sum_probs=135.2
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003315 204 SICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIE 283 (831)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 283 (831)
+...+..++..+.+.|++++|...|++.++.. +.+...|..+...+.+.|++++|++.++++.+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45677888999999999999999999999864 4578889999999999999999999999999864 446778899999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 003315 284 GLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINK 363 (831)
Q Consensus 284 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 363 (831)
++...|++++|...|++..+.+ |.+...+...+....+. .++.. +..........+......+... ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 9999999999999999988753 21211111122222211 11222 2223333333454444444333 3689999
Q ss_pred HHHHHHHHHhCCCCCCHhhH-HHHHHHHHhc-CChHHHHHHHHHHHHC
Q 003315 364 ALLLHHEMTSKGIKTNCGVL-SVILKGLCQK-GMASATIKQFLEFKDM 409 (831)
Q Consensus 364 A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~-~~~~~a~~~~~~~~~~ 409 (831)
|++.++...+. .|+.... ..+...+.+. +..+++.++|....+.
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999888765 3444333 3333334444 6688899999887653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.8e-07 Score=87.97 Aligned_cols=201 Identities=10% Similarity=-0.026 Sum_probs=145.3
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhc-CC
Q 003315 94 LRKEPKIALSFFEQLKRSGFSHNLCTYAAI-------VRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCG-EG 165 (831)
Q Consensus 94 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 165 (831)
+.+++..|++.|..+.+.++. ..+.|.-+ ..++.+.++..++...+...+...|.. +.. ... .|
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~-l~a------~~~~~g 89 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMST-LNA------RIAIGG 89 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGG-GCC------EEECCT
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhh-hhh------hhccCC
Confidence 578999999999999865433 67888766 455655555666665555555543220 000 000 01
Q ss_pred --------CcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 003315 166 --------STLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLS 237 (831)
Q Consensus 166 --------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 237 (831)
......+...++..+...|++++|.++|+.+...++. +. ....+...+.+.+++++|+..|+...+.. .
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d 166 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-D 166 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-C
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-C
Confidence 0112556778889999999999999999998876633 44 66677778999999999999998765531 1
Q ss_pred CC--hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003315 238 LN--EYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPN--AFAYSTCIEGLCMNGMLDLGYELLLKWEEAD 305 (831)
Q Consensus 238 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (831)
|. ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++...+
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 11 23678888999999999999999999985432254 3466777888999999999999999999875
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.7e-06 Score=81.94 Aligned_cols=91 Identities=13% Similarity=-0.086 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003315 209 NYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMN 288 (831)
Q Consensus 209 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 288 (831)
..+...+...|++++|...|++.. +|+...|..+...+.+.|++++|++.|++..+.. +.+...+..+..++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 344455555555555555555542 2345555555555555555555555555555432 23344455555555555
Q ss_pred CChhHHHHHHHHHHHC
Q 003315 289 GMLDLGYELLLKWEEA 304 (831)
Q Consensus 289 ~~~~~a~~~~~~~~~~ 304 (831)
|++++|...+++..+.
T Consensus 85 ~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQ 100 (213)
T ss_dssp TCHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHh
Confidence 5555555555555544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-06 Score=79.22 Aligned_cols=131 Identities=8% Similarity=-0.066 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
....+..++..+...|++++|+..|+++++..+. +..++..++.++...|++++|...|++..+.. +.+...+..+..
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~ 89 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3457788899999999999999999999887644 67788888889999999999999999988764 456778888888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCChhHHHHHHHHHH
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYST--CIEGLCMNGMLDLGYELLLKWE 302 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~ 302 (831)
.+...|++++|.+.|+++.+.. +.+...+.. .+..+...|++++|...+....
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8889999999999998888753 233444433 3333666677777777766543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.61 E-value=1e-06 Score=75.09 Aligned_cols=110 Identities=14% Similarity=-0.077 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003315 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQI 196 (831)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 196 (831)
...+...+..+.+.|++++|...|.+.++..|. ++.+|..++.+|.+.|++++|+..|+++
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a 73 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-------------------NAILYSNRAACLTKLMEFQRALDDCDTC 73 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------------CHHHHHHHhhHHHhhccHHHHHHHHHHH
Confidence 345667788899999999999999999988554 5678999999999999999999999999
Q ss_pred HHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 003315 197 NRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVI 247 (831)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 247 (831)
++.++. +..++..++.++...|++++|...|++.++.. |.+...+..+.
T Consensus 74 l~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~ 122 (126)
T 4gco_A 74 IRLDSK-FIKGYIRKAACLVAMREWSKAQRAYEDALQVD-PSNEEAREGVR 122 (126)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHhhhh-hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHH
Confidence 998755 78899999999999999999999999999864 34555555544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.1e-06 Score=81.28 Aligned_cols=128 Identities=7% Similarity=-0.165 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC 251 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (831)
.+..++..+...|++++|+..|+++. .++..++..++.++...|++++|...|++..+.. +.+...|..+...+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 45688889999999999999999874 4578899999999999999999999999999865 557788999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003315 252 KKGSMQEAVEVFLEMEKAGVTPN----------------AFAYSTCIEGLCMNGMLDLGYELLLKWEEAD 305 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (831)
..|++++|++.|+++.+.. +.+ ...+..+..++...|++++|...+++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999853 222 2577778888888888888888888888764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.59 E-value=5.4e-06 Score=83.00 Aligned_cols=156 Identities=14% Similarity=0.004 Sum_probs=102.6
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCC---------hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc-----cHHHHHH
Q 003315 529 GLCMGGRVEEAEAFLDGLKGKCLEN---------YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKS-----SCNKLIT 594 (831)
Q Consensus 529 ~~~~~g~~~~a~~~~~~~~~~~~~~---------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~ 594 (831)
.+...|++++|...+++.....+.. +..++..+...+++++|+..++++.+.....+.. ++..++.
T Consensus 84 ~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~ 163 (293)
T 3u3w_A 84 MLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 3444555555555555544433221 1234455555667777777777776643322221 4677777
Q ss_pred HHHhcCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HhHHHHHH
Q 003315 595 NLLILRDNNNALKLFKTMIT----L-NAEPS-KSMYDKLIGALCQAEEMEQAQLVFNVLVDK----GLTPH-LVTYTMMI 663 (831)
Q Consensus 595 ~~~~~~~~~~a~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~ 663 (831)
++...|++++|...++++.+ . +..+. ..++..++.+|.+.|++++|...++++++. +..+. ...|..+.
T Consensus 164 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 243 (293)
T 3u3w_A 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRG 243 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 77888888888888877773 1 11122 337788999999999999999999988752 22222 56889999
Q ss_pred HHHHHcCC-HHHHHHHHHHHHH
Q 003315 664 HGYCKINC-LREARDVFNDMKQ 684 (831)
Q Consensus 664 ~~~~~~g~-~~~A~~~~~~m~~ 684 (831)
.+|.+.|+ +++|...+++...
T Consensus 244 ~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 244 ECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHH
Confidence 99999995 6999999998864
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-06 Score=75.51 Aligned_cols=121 Identities=10% Similarity=-0.021 Sum_probs=95.9
Q ss_pred CcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHH
Q 003315 166 STLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVI 245 (831)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 245 (831)
.+.+..++..++..+...|++++|+..|+++++..+. +..++..+..++...|++++|...|++..+.. +.+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 4557788899999999999999999999999887644 77788888889999999999999999988764 456778888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003315 246 VIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNG 289 (831)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 289 (831)
+...+.+.|++++|++.|++..+.. +.+...+..+..++...|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 8888889999999999999888753 223445555555555444
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.57 E-value=2e-06 Score=77.53 Aligned_cols=131 Identities=8% Similarity=-0.043 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003315 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQI 196 (831)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 196 (831)
+..+..++..+...|++++|...+.++++..+. +..++..++..+...|++++|+..++++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a 73 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS-------------------NAIYYGNRSLAYLRTECYGYALGDATRA 73 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456777888888999999999999998887543 4567889999999999999999999999
Q ss_pred HHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHH--HHHHHHHhcCChHHHHHHHHHHHh
Q 003315 197 NRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYV--IVIKALCKKGSMQEAVEVFLEMEK 268 (831)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~ 268 (831)
++..+. +..++..++.++...|++++|...|++..+.. +.+...+. .++..+.+.|++++|++.++....
T Consensus 74 ~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 74 IELDKK-YIKGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 988744 78889999999999999999999999998764 34555553 344447788999999999987653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.55 E-value=2.4e-06 Score=72.49 Aligned_cols=114 Identities=20% Similarity=0.140 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA 249 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (831)
..++..++..+...|++++|+..|+++.+..+ .+..++..+...+.+.|++++|...|+++.+.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 45677888888888888888888888887653 366777778888888888888888888877654 4466777778888
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003315 250 LCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLC 286 (831)
Q Consensus 250 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 286 (831)
+...|++++|.+.|+++.+.. +.+...+..+...+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 888888888888888877653 233444444444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=1.8e-06 Score=73.99 Aligned_cols=120 Identities=10% Similarity=-0.084 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
....+..++..+...|++++|+..|+++.+..+. +..++..+..++...|++++|...++...+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 5567888888899999999999999998887643 67778888888888999999999998888754 445777888888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGML 291 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 291 (831)
.+.+.|++++|.+.|++..+.. +.+...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 8888888888888888887763 33556666666776666654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.54 E-value=9.4e-07 Score=77.66 Aligned_cols=104 Identities=9% Similarity=-0.092 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
++..+..++..+...|++++|...|.+++...|. ++.+|..++.+|...|++++|+..|++
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-------------------~~~~~~~lg~~~~~~g~~~~Ai~~~~~ 95 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-------------------NVDYIMGLAAIYQIKEQFQQAADLYAV 95 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------------CHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 5667788888889999999999999998888554 667888999999999999999999999
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChh
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEY 241 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 241 (831)
+++.++. ++.++..+..+|.+.|++++|...|++.++.. |+..
T Consensus 96 al~l~P~-~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 96 AFALGKN-DYTPVFHTGQCQLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHHSSS-CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 9988755 77888889999999999999999999988754 5543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.53 E-value=8.9e-07 Score=81.04 Aligned_cols=120 Identities=8% Similarity=-0.011 Sum_probs=75.6
Q ss_pred cCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhH
Q 003315 129 CCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSC 208 (831)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 208 (831)
..|++++|...+...+...|. ++.++..++..|...|++++|+..|+++++.++. +...+
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 81 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-------------------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELY 81 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHH
Confidence 345566666666666665333 3456667777777777777777777777666533 55566
Q ss_pred HHHHHH-HHHcCCh--hHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 209 NYFMNQ-LVECGKV--DMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 209 ~~l~~~-~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 269 (831)
..+..+ +...|++ ++|...|++..+.. +.+...+..+...+...|++++|...|+++.+.
T Consensus 82 ~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 82 AALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666 5666776 77777777766653 334566666667777777777777777777665
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.52 E-value=9.1e-06 Score=81.33 Aligned_cols=165 Identities=8% Similarity=0.011 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcCh-----hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC---CC--hh
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSI-----CSCNYFMNQLVECGKVDMALAVYQHLKRLGLS---LN--EY 241 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~--~~ 241 (831)
.+...+..+...|++++|+..+.+.++....... ..+..+...+...|++++|+..|++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445667777888888888888877765432110 12233445556666777777777766542111 11 23
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCC-Ch
Q 003315 242 TYVIVIKALCKKGSMQEAVEVFLEMEKA-GVTPN-----AFAYSTCIEGLCMNGMLDLGYELLLKWEEAD----IPL-SA 310 (831)
Q Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~ 310 (831)
+++.+...|...|++++|+..|+++.+. ...|+ ..++..+...|...|++++|...+++.++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 5666666677777777777777666521 00111 1355555555666666666666655554321 000 13
Q ss_pred hhHHHHHHHHHhcCCHhHH-HHHHHHH
Q 003315 311 FAYTVVIRWFCDQNKLEKA-ECVLLHM 336 (831)
Q Consensus 311 ~~~~~l~~~~~~~g~~~~A-~~~~~~~ 336 (831)
.++..+...|.+.|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3444555555555555555 4444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-05 Score=80.45 Aligned_cols=163 Identities=9% Similarity=0.038 Sum_probs=89.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCC-cCh----hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC-CC----hhhH
Q 003315 174 DAMIKAYVSVGMFDEGIDILFQINRRGFV-WSI----CSCNYFMNQLVECGKVDMALAVYQHLKRLGLS-LN----EYTY 243 (831)
Q Consensus 174 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~ 243 (831)
...+..+...|++++|...++++.+.... ++. ..+..+...+...+++++|+..|++..+.... ++ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 34466777888888888888887764322 121 12234555566666777777777777763222 22 1256
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC-----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCChhh
Q 003315 244 VIVIKALCKKGSMQEAVEVFLEMEKA-----GVTPN-AFAYSTCIEGLCMNGMLDLGYELLLKWEEA----DI-PLSAFA 312 (831)
Q Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~m~~~-----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 312 (831)
+.+...|...|++++|+..|+++++. +..+. ..++..+...|.+.|++++|...+++.++. +. ..-..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 77777777777777777777776631 11111 124555555566666666666655554432 10 111334
Q ss_pred HHHHHHHHHhcC-CHhHHHHHHHHH
Q 003315 313 YTVVIRWFCDQN-KLEKAECVLLHM 336 (831)
Q Consensus 313 ~~~l~~~~~~~g-~~~~A~~~~~~~ 336 (831)
+..+...+.+.| ++++|.+.+++.
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 444445555555 234554444443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.51 E-value=2.8e-06 Score=72.06 Aligned_cols=97 Identities=23% Similarity=0.178 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003315 206 CSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGL 285 (831)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 285 (831)
..+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344555555555555555555555555432 2344455555555555555555555555555432 22344444444555
Q ss_pred HhcCChhHHHHHHHHHHHC
Q 003315 286 CMNGMLDLGYELLLKWEEA 304 (831)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~ 304 (831)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 5555555555555554443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=5.2e-07 Score=79.52 Aligned_cols=99 Identities=9% Similarity=0.008 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
+..++..++..+...|++++|+..|++++..++. +...+..+..++...|++++|+..|++.++.. +.++..+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 5567788889999999999999999999888744 78888888899999999999999999988764 456778888888
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 003315 249 ALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~ 269 (831)
++...|++++|++.|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999988775
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.49 E-value=2.2e-07 Score=95.03 Aligned_cols=122 Identities=13% Similarity=-0.046 Sum_probs=60.7
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC---------------hhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 205 ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLN---------------EYTYVIVIKALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 269 (831)
...+..+...+.+.|++++|...|++.++.. +.+ ...|..+...+.+.|++++|+..|+++++.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555432 111 244555555555555555555555555544
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHH
Q 003315 270 GVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKA 329 (831)
Q Consensus 270 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 329 (831)
. +.+..++..+..+|...|++++|...|+++++.. |.+..++..+..++.+.|++++|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 2234445555555555555555555555555443 33444455555555555555544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.48 E-value=2.6e-06 Score=87.05 Aligned_cols=133 Identities=13% Similarity=-0.072 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcC--------------hhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWS--------------ICSCNYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
...++..++..|.+.|++++|+..|+++++..+... ..++..+..++.+.|++++|+..|++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456888999999999999999999999999875532 578999999999999999999999999987
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHHHH
Q 003315 235 GLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLG-YELLLKWEE 303 (831)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 303 (831)
. +.+...|..+..+|...|++++|+..|+++++.. +.+..++..+..++...|+.+++ ...++.|..
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 5578899999999999999999999999999874 44677888899999999999888 456665543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=8.8e-07 Score=78.00 Aligned_cols=110 Identities=14% Similarity=0.004 Sum_probs=76.7
Q ss_pred HHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003315 192 ILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGV 271 (831)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 271 (831)
.|++++..++ .+...+..+...+...|++++|...|+..++.. +.+...|..+..++...|++++|++.|+++.+..
T Consensus 9 ~~~~al~~~p-~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 9 TIAMLNEISS-DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp SHHHHTTCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred hHHHHHcCCH-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 3455555542 255566667777778888888888888777654 4466677777777777888888888888777653
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003315 272 TPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEA 304 (831)
Q Consensus 272 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (831)
+.+...+..+..++...|++++|...|++.++.
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 335566677777777777777777777777665
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=3e-06 Score=72.94 Aligned_cols=117 Identities=4% Similarity=-0.088 Sum_probs=79.2
Q ss_pred CChHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 003315 82 LNTREVVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEAL 161 (831)
Q Consensus 82 ~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (831)
.......+..+...|+++.|...|+.+.+.. +.+...+..++.++...|++++|...+.++++..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------------ 82 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT------------ 82 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------------
Confidence 3445555666677788888888888877553 236777777777777788888888777777766433
Q ss_pred hcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcC
Q 003315 162 CGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECG 219 (831)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 219 (831)
+..++..++.++...|++++|+..|+++.+..+. +...+..+..++...|
T Consensus 83 -------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 83 -------FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred -------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 4456677777777777777777777777766533 4455555555555443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=3.7e-06 Score=71.98 Aligned_cols=120 Identities=11% Similarity=-0.120 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
++..+..++..+...|++++|...+.+++...+. +..++..++..+...|++++|+..+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~ 71 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-------------------NAVYFCNRAAAYSKLGNYAGAVQDCER 71 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-------------------CHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 4556666777777777777777777777766333 345667777777788888888888887
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSM 256 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 256 (831)
+.+..+. +...+..++.++...|++++|...|++..+.. +.+...+..+...+.+.|++
T Consensus 72 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 72 AICIDPA-YSKAYGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHhcCcc-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 7776533 56677777777888888888888888777654 34566666677677666654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.47 E-value=2e-06 Score=78.71 Aligned_cols=122 Identities=11% Similarity=0.003 Sum_probs=88.2
Q ss_pred HHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH-HHhcCCh--H
Q 003315 181 VSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA-LCKKGSM--Q 257 (831)
Q Consensus 181 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 257 (831)
...|++++|+..++++++..+. +..++..+..++...|++++|...|++..+.. +.+...+..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 4567888888888888777643 67778888888888888888888888877654 3466677777777 6677887 8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003315 258 EAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEAD 305 (831)
Q Consensus 258 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 305 (831)
+|+..|+++.+.. +.+...+..+..++...|++++|...++++.+..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888888887753 3345667777777888888888888888877764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.46 E-value=4.1e-06 Score=71.38 Aligned_cols=99 Identities=10% Similarity=-0.011 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
....+..++..+.+.|++++|+..|+++++.++. +...+..+..++.+.|++++|+..|++.++.. +.+...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3457778899999999999999999999988744 78888999999999999999999999988865 456778888999
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 003315 249 ALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~ 269 (831)
.+...|++++|++.|++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 999999999999999988875
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.7e-05 Score=79.36 Aligned_cols=174 Identities=13% Similarity=0.012 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003315 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQI 196 (831)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 196 (831)
...+...+..+...|++++|...+.+.++..+... ... .....+..++..+...|++++|+..++++
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~-~~~------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 141 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP-EFQ------------QFLQWQYYVAAYVLKKVDYEYCILELKKL 141 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCH-HHH------------HHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCCh-hHH------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 34555677788899999999999998887644311 110 12234556788888999999999999998
Q ss_pred HHcCCC---cC--hhhHHHHHHHHHHcCChhHHHHHHHHHHhc--CCCCC----hhhHHHHHHHHHhcCChHHHHHHHHH
Q 003315 197 NRRGFV---WS--ICSCNYFMNQLVECGKVDMALAVYQHLKRL--GLSLN----EYTYVIVIKALCKKGSMQEAVEVFLE 265 (831)
Q Consensus 197 ~~~~~~---~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 265 (831)
++.... +. ..+++.++..|...|++++|...|++..+. ..+.+ ..+++.+...|.+.|++++|++.+++
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~k 221 (293)
T 2qfc_A 142 LNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp HTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 864322 11 447889999999999999999999998731 11111 25888899999999999999999999
Q ss_pred HHhCC----CCC-CHHHHHHHHHHHHhcCChhHH-HHHHHHHHH
Q 003315 266 MEKAG----VTP-NAFAYSTCIEGLCMNGMLDLG-YELLLKWEE 303 (831)
Q Consensus 266 m~~~~----~~p-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 303 (831)
..+.. ... -..+|..+..+|.+.|++++| ...+++...
T Consensus 222 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 222 AIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 87642 111 156788899999999999999 777877654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=9.6e-05 Score=73.52 Aligned_cols=190 Identities=11% Similarity=-0.082 Sum_probs=140.2
Q ss_pred HHHcCChh-HHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCC----------hhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 180 YVSVGMFD-EGIDILFQINRRGFVWSICSCNYFMNQLVECGK----------VDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 180 ~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
..+.|.++ +|+..++.++..++. +..+++.-..++...+. +++++.+++.++... |.+..+|+.-..
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34566665 799999999998865 67778777666665544 578889999888764 567788888777
Q ss_pred HHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc--
Q 003315 249 ALCKKG--SMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGM-LDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQ-- 323 (831)
Q Consensus 249 ~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 323 (831)
.+.+.| .++++++.++++.+.. +-|..+|+.-.-++...|. ++++++.+.++++.+ +-|..+|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSC
T ss_pred HHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhh
Confidence 777777 4889999999999875 4577788887777778888 588999999999876 66777777776666554
Q ss_pred ------------CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHhC
Q 003315 324 ------------NKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKF-----------GKINKALLLHHEMTSK 374 (831)
Q Consensus 324 ------------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------~~~~~A~~~~~~~~~~ 374 (831)
+.++++.+.+.......+. |...|+-+-..+.+. +.++++++.++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 4577888888888877555 777777655555544 3355666666666654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=8.7e-05 Score=73.80 Aligned_cols=221 Identities=10% Similarity=-0.049 Sum_probs=158.1
Q ss_pred CCCh-hhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHH
Q 003315 130 CGWQ-KKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGM----------FDEGIDILFQINR 198 (831)
Q Consensus 130 ~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~ 198 (831)
.|.+ ++|+.+...++..+|. +..+|+.-..++...+. +++++.+++.++.
T Consensus 42 ~~e~s~eaL~~t~~~L~~nP~-------------------~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~ 102 (331)
T 3dss_A 42 AGELDESVLELTSQILGANPD-------------------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR 102 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTCTT-------------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCch-------------------hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH
Confidence 3433 3677777777777554 33344444444433333 6899999999999
Q ss_pred cCCCcChhhHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCH
Q 003315 199 RGFVWSICSCNYFMNQLVECGK--VDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGS-MQEAVEVFLEMEKAGVTPNA 275 (831)
Q Consensus 199 ~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~ 275 (831)
.++. +..+|+.-..++...++ +++++.+++.+.+.. +.|..+|+.-...+...|. ++++++.++++.+.. +-|.
T Consensus 103 ~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~ 179 (331)
T 3dss_A 103 VNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNY 179 (331)
T ss_dssp HCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCH
T ss_pred hCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCH
Confidence 8866 88899999999988884 899999999999875 5688888888888888888 599999999999875 4577
Q ss_pred HHHHHHHHHHHhc--------------CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-----------CCHhHHH
Q 003315 276 FAYSTCIEGLCMN--------------GMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQ-----------NKLEKAE 330 (831)
Q Consensus 276 ~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~ 330 (831)
.+|+.....+... +.++++++.+.+.+..+ |.|..+|+.+--.+.+. +.++++.
T Consensus 180 SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el 258 (331)
T 3dss_A 180 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSEL 258 (331)
T ss_dssp HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHH
Confidence 7888777766655 45788999999999876 77888887665555555 4578999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHhC
Q 003315 331 CVLLHMEKQGVVPDVYAYSALISG---YCKFGKINKALLLHHEMTSK 374 (831)
Q Consensus 331 ~~~~~~~~~~~~p~~~~~~~li~~---~~~~~~~~~A~~~~~~~~~~ 374 (831)
+.++++.+..+. +...+.+++.. ....+..+++...+.++.+.
T Consensus 259 ~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 259 ESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 999999986433 33333222221 11345566666677766654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.43 E-value=3e-06 Score=72.22 Aligned_cols=106 Identities=11% Similarity=-0.040 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC--CCC----hhhH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGL--SLN----EYTY 243 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~~~ 243 (831)
..++..++..+.+.|++++|+..|+++++.++. +..++..+..+|.+.|++++|+..|++.++... .++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 446778999999999999999999999998755 788899999999999999999999999886421 111 1356
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 003315 244 VIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAY 278 (831)
Q Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 278 (831)
..+...+...|++++|++.|++.++. .||....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 67777888889999999999888765 4565443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.8e-06 Score=81.02 Aligned_cols=120 Identities=13% Similarity=-0.063 Sum_probs=58.2
Q ss_pred HcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc----CC-CCChhhHHHHHHHHHhcCCh
Q 003315 182 SVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL----GL-SLNEYTYVIVIKALCKKGSM 256 (831)
Q Consensus 182 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 256 (831)
..|++++|...++.+.. .+.....++..+...+...|++++|...+++..+. +. +.....+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45666666664443322 22234455666666666666666666666665541 10 11223455555566666666
Q ss_pred HHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003315 257 QEAVEVFLEMEKA----GVTP--NAFAYSTCIEGLCMNGMLDLGYELLLKWE 302 (831)
Q Consensus 257 ~~A~~~~~~m~~~----~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (831)
++|.+.+++..+. +-.| ...++..+...+...|++++|...+++..
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6666666655442 1011 12234444444555555555555554443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.38 E-value=3.9e-06 Score=73.35 Aligned_cols=99 Identities=11% Similarity=-0.041 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
+...+..++..+.+.|++++|+..|++++..++. +...+..+..++.+.|++++|+..|++.++.. +.++..+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 4567778888999999999999999999988754 78888889999999999999999999988765 456778888889
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 003315 249 ALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~ 269 (831)
.+...|++++|++.|+++.+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999988775
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.4e-06 Score=78.31 Aligned_cols=161 Identities=8% Similarity=-0.033 Sum_probs=112.5
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHH
Q 003315 94 LRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLS 173 (831)
Q Consensus 94 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (831)
..|+++.|.+.++.+... ......++..++.++...|++++|...+.+.+....... ..+....++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~~~~~~~~ 69 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG-------------DHTAEHRAL 69 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-------------CHHHHHHHH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC-------------CcHHHHHHH
Confidence 468899999966655432 234678888999999999999999999998877532211 112245678
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHc---CC-C--cChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCC----hhh
Q 003315 174 DAMIKAYVSVGMFDEGIDILFQINRR---GF-V--WSICSCNYFMNQLVECGKVDMALAVYQHLKRLGL-SLN----EYT 242 (831)
Q Consensus 174 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~-~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~ 242 (831)
..++..|...|++++|+..++++++. .. . ....++..+..++...|++++|...+++..+... ..+ ..+
T Consensus 70 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 149 (203)
T 3gw4_A 70 HQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACA 149 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 89999999999999999999987764 11 1 1244567778888888899988888888764210 112 223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 243 YVIVIKALCKKGSMQEAVEVFLEMEK 268 (831)
Q Consensus 243 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 268 (831)
+..+...+...|++++|.+.+++..+
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56677777788888888888877654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=5.6e-07 Score=84.17 Aligned_cols=119 Identities=13% Similarity=0.015 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCh----------------hhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003315 207 SCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNE----------------YTYVIVIKALCKKGSMQEAVEVFLEMEKAG 270 (831)
Q Consensus 207 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 270 (831)
.+..+...+...|++++|...|++.++.. +.++ ..|..+...+.+.|++++|+..++++.+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34455555555566666666665555432 1111 344444444455555555555555544432
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhH
Q 003315 271 VTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEK 328 (831)
Q Consensus 271 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 328 (831)
+.+...+..+..++...|++++|...|++..+.. |.+..++..+..++...++.++
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 2233444444444444444444444444444432 3334444444444444433333
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.4e-05 Score=66.72 Aligned_cols=99 Identities=14% Similarity=-0.041 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA 249 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (831)
...+..++..+...|++++|+..|+++....+. +...+..+..++...|++++|...+++..+.. +.+...+..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 456778888888888999999988888877643 67777888888888888888888888887754 3456777888888
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 003315 250 LCKKGSMQEAVEVFLEMEKAG 270 (831)
Q Consensus 250 ~~~~g~~~~A~~~~~~m~~~~ 270 (831)
+...|++++|.+.+++..+.+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHHHHHHHHHcC
Confidence 888888888888888887653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.36 E-value=4.6e-06 Score=72.84 Aligned_cols=99 Identities=11% Similarity=-0.030 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
+...+..++..+...|++++|...+..++...|. ++.++..++.+|...|++++|+..|++
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 77 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-------------------DARYFLGLGACRQSLGLYEQALQSYSY 77 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-------------------cHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4455666777778888888888888887777543 556777888888888888888888888
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
+++.++. +...+..+..++...|++++|...|+..++.
T Consensus 78 al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 78 GALMDIN-EPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8887644 6677777888888888888888888887764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.33 E-value=7.1e-06 Score=69.86 Aligned_cols=94 Identities=20% Similarity=0.035 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 003315 243 YVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCD 322 (831)
Q Consensus 243 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (831)
+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++.++.+ |.+...+..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 3334444444444444444444444332 2233344444444444444444444444444432 3334444444444455
Q ss_pred cCCHhHHHHHHHHHHH
Q 003315 323 QNKLEKAECVLLHMEK 338 (831)
Q Consensus 323 ~g~~~~A~~~~~~~~~ 338 (831)
.|++++|...|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555555544444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.3e-05 Score=71.93 Aligned_cols=100 Identities=10% Similarity=-0.057 Sum_probs=90.3
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 003315 168 LLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVI 247 (831)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 247 (831)
.....+..++..+...|++++|+..|+++++..+. +...+..+..++.+.|++++|+..|++.++.. +.+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 45678889999999999999999999999998754 78889999999999999999999999999875 45688899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 003315 248 KALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~ 269 (831)
..+.+.|++++|++.|++.++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999876
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=4.9e-06 Score=70.17 Aligned_cols=96 Identities=7% Similarity=-0.059 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC 251 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (831)
.+..++..+.+.|++++|+..|+++++..+. +..++..+..++...|++++|+..|++.++.. +.+...+..+...+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3567788888999999999999999988754 78888889999999999999999999988765 446778888888899
Q ss_pred hcCChHHHHHHHHHHHhC
Q 003315 252 KKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~ 269 (831)
+.|++++|+..|+++++.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988865
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=2e-05 Score=65.79 Aligned_cols=93 Identities=20% Similarity=0.103 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003315 208 CNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCM 287 (831)
Q Consensus 208 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 287 (831)
+..++..+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3334444444444444444444444322 2233344444444444444444444444443321 1123333333333333
Q ss_pred cCChhHHHHHHHHHH
Q 003315 288 NGMLDLGYELLLKWE 302 (831)
Q Consensus 288 ~~~~~~a~~~~~~~~ 302 (831)
.|++++|...+++..
T Consensus 85 ~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 85 LNRFEEAKRTYEEGL 99 (118)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 344444443333333
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.28 E-value=6.4e-06 Score=70.50 Aligned_cols=112 Identities=8% Similarity=0.064 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC--CCC----hhhH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGL--SLN----EYTY 243 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~~~ 243 (831)
...+..++..+...|++++|+..|+++.+..+. +..++..+...+...|++++|...|++..+... .++ ...+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 456778888999999999999999998887643 677788888889999999999999988876431 111 6677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003315 244 VIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEG 284 (831)
Q Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 284 (831)
..+...+.+.|++++|.+.|+++.+. .|+......+..+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 78888888889999999998888875 3555555444433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.1e-05 Score=75.13 Aligned_cols=132 Identities=8% Similarity=-0.156 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcC---------------hhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWS---------------ICSCNYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
...+..++..+...|++++|+..|+++++..+... ..++..+..++.+.|++++|+..++..++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45677889999999999999999999998754311 267888999999999999999999999986
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHHHH
Q 003315 235 GLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGY-ELLLKWEE 303 (831)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~ 303 (831)
. +.+...+..+..++...|++++|++.|++..+.. +.+...+..+..++...++.+++. ..+..+..
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4 4577889999999999999999999999998864 345667777777777777666655 44444433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.5e-05 Score=71.66 Aligned_cols=100 Identities=6% Similarity=-0.138 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
+...+..++.++...|++++|...|.++++..+. ++.++..++.+|...|++++|+..|++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 70 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-------------------NPIYLSNRAAAYSASGQHEKAAEDAEL 70 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-------------------CHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4556677777777788888888888877776443 456777888888888888888888888
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLG 235 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 235 (831)
+++.++. +..++..+..++...|++++|...|++.++..
T Consensus 71 al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 71 ATVVDPK-YSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 8877644 67777778888888888888888888877643
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.7e-05 Score=68.63 Aligned_cols=100 Identities=9% Similarity=-0.075 Sum_probs=82.8
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 003315 168 LLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVI 247 (831)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 247 (831)
.++..+..++..+...|++++|+..|.++++..+. +...+..+..++...|++++|...|++.++.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 35677888889999999999999999998887644 67788888888889999999999998888764 44677888888
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 003315 248 KALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~ 269 (831)
..+...|++++|+..|+++.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 8888889999998888888764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=7.8e-06 Score=68.87 Aligned_cols=96 Identities=7% Similarity=-0.157 Sum_probs=84.6
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 003315 119 TYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINR 198 (831)
Q Consensus 119 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 198 (831)
.+...+..+...|++++|...+.++++..|. +..++..++.++...|++++|+..|+++++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 79 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-------------------REEAWRSLGLTQAENEKDGLAIIALNHARM 79 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456777888999999999999999988654 567889999999999999999999999999
Q ss_pred cCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 199 RGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 199 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
.++. +..++..+..++...|++++|+..|++.++.
T Consensus 80 l~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 80 LDPK-DIAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9855 7888999999999999999999999998874
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.6e-05 Score=68.76 Aligned_cols=100 Identities=9% Similarity=-0.057 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHH
Q 003315 115 HNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILF 194 (831)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 194 (831)
.++..+..++..+...|++++|...+..++...|. ++.++..++.++...|++++|+..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-------------------~~~~~~~l~~~~~~~~~~~~A~~~~~ 67 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-------------------VAVYYTNRALCYLKMQQPEQALADCR 67 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-------------------cHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 46788888888899999999999999888887543 45678888999999999999999999
Q ss_pred HHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 195 QINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
++++.++. +..++..+..++...|++++|...|++..+.
T Consensus 68 ~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 68 RALELDGQ-SVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCch-hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 98888744 7778888889999999999999999888764
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.3e-05 Score=66.24 Aligned_cols=60 Identities=13% Similarity=0.131 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 208 CNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEK 268 (831)
Q Consensus 208 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 268 (831)
+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|++.|+++.+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3334444444444444444444444322 22333344444444444444444444444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.9e-05 Score=67.13 Aligned_cols=108 Identities=6% Similarity=-0.097 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003315 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQI 196 (831)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 196 (831)
...+..++..+.+.|++++|...|.++++..|. ++.+|..++.+|...|++++|+..++++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-------------------~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-------------------NITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------------CHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 345667888999999999999999999988654 5678899999999999999999999999
Q ss_pred HHcCCCcC------hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHH
Q 003315 197 NRRGFVWS------ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVI 245 (831)
Q Consensus 197 ~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 245 (831)
++.++... ..++..++.++...|++++|++.|++.++. .||+.....
T Consensus 69 l~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 69 VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 87643211 236777888899999999999999998874 466655443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.21 E-value=9.6e-06 Score=67.06 Aligned_cols=99 Identities=13% Similarity=-0.043 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC--ChhhHHHHH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSL--NEYTYVIVI 247 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 247 (831)
..++..++..+...|++++|+..|+++++..+. +..++..+..++...|++++|...|++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 345678899999999999999999999988744 77888999999999999999999999999864 34 578899999
Q ss_pred HHHHhc-CChHHHHHHHHHHHhCC
Q 003315 248 KALCKK-GSMQEAVEVFLEMEKAG 270 (831)
Q Consensus 248 ~~~~~~-g~~~~A~~~~~~m~~~~ 270 (831)
..+.+. |++++|++.+++..+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 999999 99999999999998763
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.6e-05 Score=67.48 Aligned_cols=97 Identities=13% Similarity=-0.104 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHH
Q 003315 240 EYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPN----AFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTV 315 (831)
Q Consensus 240 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 315 (831)
...+..+...+...|++++|++.|++..+. .|+ ...+..+..++...|++++|...+++..+.. +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 344445555555555555555555555543 233 3444445555555555555555555555442 334455555
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 316 VIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 316 l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
+..++...|++++|...|++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 555555555555555555555554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.17 E-value=4e-05 Score=67.20 Aligned_cols=100 Identities=10% Similarity=-0.090 Sum_probs=82.7
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcC---hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHH
Q 003315 168 LLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWS---ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYV 244 (831)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 244 (831)
.....+..++..+...|++++|+..|+++++..+. + ...+..+..++...|++++|+..|++..+.. +.+...+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 45678888999999999999999999999887533 2 6677888888899999999999998888754 34677888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 245 IVIKALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 245 ~l~~~~~~~g~~~~A~~~~~~m~~~ 269 (831)
.+...+...|++++|.+.|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 8888888899999999999888875
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.14 E-value=3.5e-05 Score=65.71 Aligned_cols=95 Identities=8% Similarity=0.057 Sum_probs=74.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCcCh---hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC---hhhHHHH
Q 003315 173 SDAMIKAYVSVGMFDEGIDILFQINRRGFVWSI---CSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLN---EYTYVIV 246 (831)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l 246 (831)
+..++..+...|++++|+..|+++++..+. +. .++..+..++.+.|++++|...|+.+.+.. +.+ +..+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 456777888899999999999988887643 33 467778888888899999999988888754 233 5567778
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC
Q 003315 247 IKALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 247 ~~~~~~~g~~~~A~~~~~~m~~~ 269 (831)
...+.+.|++++|...|+++.+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888888888775
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=9.9e-05 Score=78.64 Aligned_cols=199 Identities=10% Similarity=-0.036 Sum_probs=128.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCcCh----------------hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 003315 174 DAMIKAYVSVGMFDEGIDILFQINRRGFVWSI----------------CSCNYFMNQLVECGKVDMALAVYQHLKRLGLS 237 (831)
Q Consensus 174 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 237 (831)
..-++.+.+.|++++|++.|.++++....... .++..++..|...|++++|.+.+..+.+....
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~ 87 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ 87 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 35567788999999999999999887543211 23667888888888888888888876642101
Q ss_pred -CCh----hhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHC--C
Q 003315 238 -LNE----YTYVIVIKALCKKGSMQEAVEVFLEMEKA----GVTPN-AFAYSTCIEGLCMNGMLDLGYELLLKWEEA--D 305 (831)
Q Consensus 238 -~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~ 305 (831)
++. ...+.+...+...|+++.|.+++++.... +..+. ..++..+...+...|++++|..+++++... +
T Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 167 (434)
T 4b4t_Q 88 FAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK 167 (434)
T ss_dssp SCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence 111 12233333444567888888888776542 22222 346677778888888888888888776543 1
Q ss_pred ---CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC--C-CC-C--HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 306 ---IPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQG--V-VP-D--VYAYSALISGYCKFGKINKALLLHHEMT 372 (831)
Q Consensus 306 ---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~p-~--~~~~~~li~~~~~~~~~~~A~~~~~~~~ 372 (831)
.+....++..+++.|...|++++|...+++..... . .| . ...+..+...+...+++++|...|.+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 168 LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11124567777788888888888888877765421 1 11 1 2345555666667777777777666654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.12 E-value=2.6e-05 Score=66.52 Aligned_cols=113 Identities=7% Similarity=-0.140 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003315 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQI 196 (831)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 196 (831)
+..+..++..+...|++++|...+.+++...+. ++.++..++..|...|++++|+..++++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-------------------NMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-------------------cHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 456788888999999999999999998887443 4567889999999999999999999998
Q ss_pred HHcCCC--cC----hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 003315 197 NRRGFV--WS----ICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKAL 250 (831)
Q Consensus 197 ~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (831)
.+..+. ++ ..++..++.++...|++++|...|+...+.. |+...+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 877532 11 6778889999999999999999999998854 5666655555443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.10 E-value=6.4e-05 Score=64.02 Aligned_cols=99 Identities=9% Similarity=-0.080 Sum_probs=82.4
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 003315 120 YAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR 199 (831)
Q Consensus 120 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 199 (831)
+..++..+...|++++|...+..+++..|. ....+.++..++.++...|++++|+..|+++++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~ 68 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN----------------GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR 68 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS----------------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC----------------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 456777888999999999999998887554 1223467889999999999999999999999987
Q ss_pred CCCcC---hhhHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 003315 200 GFVWS---ICSCNYFMNQLVECGKVDMALAVYQHLKRLG 235 (831)
Q Consensus 200 ~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 235 (831)
.+. + ..++..+..++...|++++|...|+.+.+..
T Consensus 69 ~p~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 69 YPT-HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp CTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCC-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 644 4 5678888999999999999999999998764
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.03 E-value=5.1e-05 Score=67.90 Aligned_cols=100 Identities=14% Similarity=-0.009 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHc--------CC---------CcChhhHHHHHHHHHHcCChhHHHHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRR--------GF---------VWSICSCNYFMNQLVECGKVDMALAVYQHL 231 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 231 (831)
....+...+..+.+.|++++|+..|.++++. .+ +.+..++..+..++.+.|++++|+..++..
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3456778999999999999999999998875 11 113355666777777777777777777777
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 232 KRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 269 (831)
++.. +.++..|..+..++...|++++|+..|++.++.
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 7654 445667777777777777777777777777765
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.03 E-value=4.9e-05 Score=81.17 Aligned_cols=139 Identities=9% Similarity=-0.071 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
....+..++..|.+.|++++|+..|+++++..+..... ..+... ++.. .....|..+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-------------~~~~~~----~~~~----~~~~~~~nla~ 325 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL-------------SEKESK----ASES----FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC-------------CHHHHH----HHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC-------------ChHHHH----HHHH----HHHHHHHHHHH
Confidence 34567788888888888888888888888764332100 000000 0000 01234444444
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhH
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEK 328 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 328 (831)
+|.+.|++++|+..++++++.. +.+...+..+..+|...|++++|...|+++++.. |.+..++..+..++.+.+++++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555544432 2234444444555555555555555555554443 3344455555555555555554
Q ss_pred HH
Q 003315 329 AE 330 (831)
Q Consensus 329 A~ 330 (831)
+.
T Consensus 404 a~ 405 (457)
T 1kt0_A 404 RD 405 (457)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.01 E-value=6.6e-05 Score=65.01 Aligned_cols=97 Identities=14% Similarity=0.022 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCc------Ch-----hhHHHHHHHHHHcCChhHHHHHHHHHHhc-----
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRGFVW------SI-----CSCNYFMNQLVECGKVDMALAVYQHLKRL----- 234 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 234 (831)
..+...+..+...|++++|+..|+++++..+.. +. .+|+.+..++.+.|++++|+..|++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 456678888999999999999999999876441 11 26666777777777777777777776664
Q ss_pred --CCCCChhhH----HHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 235 --GLSLNEYTY----VIVIKALCKKGSMQEAVEVFLEMEK 268 (831)
Q Consensus 235 --~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 268 (831)
. +.+...| .....++...|++++|+..|++.++
T Consensus 92 e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3 2234455 6666666666666666666666654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.01 E-value=3.7e-05 Score=68.61 Aligned_cols=134 Identities=11% Similarity=-0.043 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-cC----hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCC---
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFV-WS----ICSCNYFMNQLVECGKVDMALAVYQHLKRLGL-SLN--- 239 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~--- 239 (831)
...++..++..+...|++++|+..++++++.... ++ ..++..+...+...|++++|...+++..+... .++
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 3457788999999999999999999987764211 11 13567777888888888888888887664210 011
Q ss_pred -hhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003315 240 -EYTYVIVIKALCKKGSMQEAVEVFLEMEKA----GVTP-NAFAYSTCIEGLCMNGMLDLGYELLLKWE 302 (831)
Q Consensus 240 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (831)
...+..+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|...+++..
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 335666667777777777777777776542 1000 01233344444444455544444444433
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.00 E-value=4e-06 Score=90.03 Aligned_cols=124 Identities=10% Similarity=-0.044 Sum_probs=83.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003315 173 SDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK 252 (831)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (831)
+..++..+.+.|++++|+..|+++++..+. +..++..+..++.+.|++++|+..|++.++.. +.+...|..+..+|.+
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 334555667788888888888888877644 67777888888888888888888888887764 4456677777888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHH
Q 003315 253 KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEG--LCMNGMLDLGYELLL 299 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~ 299 (831)
.|++++|++.|+++.+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 87 ~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888888888877653 2223344444443 556666666666665
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0002 Score=78.20 Aligned_cols=135 Identities=8% Similarity=-0.063 Sum_probs=110.1
Q ss_pred ChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHcCC
Q 003315 132 WQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGM----------FDEGIDILFQINRRGF 201 (831)
Q Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~ 201 (831)
..++|...+..++...|+ ...+|+.-..++...|+ +++++..++++++.++
T Consensus 44 ~~eeal~~~~~~l~~nP~-------------------~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p 104 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-------------------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP 104 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHCch-------------------hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC
Confidence 345678888888888655 45577777777777777 9999999999999987
Q ss_pred CcChhhHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHH
Q 003315 202 VWSICSCNYFMNQLVECG--KVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG-SMQEAVEVFLEMEKAGVTPNAFAY 278 (831)
Q Consensus 202 ~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~ 278 (831)
+ +..+|+.-..++.+.+ +++++++.++++.+.+ +.|..+|+.-...+.+.| .++++++.++++.+.. +-|..+|
T Consensus 105 K-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW 181 (567)
T 1dce_A 105 K-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSW 181 (567)
T ss_dssp T-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHH
T ss_pred C-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHH
Confidence 6 8889999999999999 6799999999999876 567888988888888888 8999999999998875 4577788
Q ss_pred HHHHHHHHhc
Q 003315 279 STCIEGLCMN 288 (831)
Q Consensus 279 ~~l~~~~~~~ 288 (831)
+....++.+.
T Consensus 182 ~~r~~ll~~l 191 (567)
T 1dce_A 182 HYRSCLLPQL 191 (567)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 8877776654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.00 E-value=5.5e-06 Score=88.94 Aligned_cols=123 Identities=8% Similarity=-0.028 Sum_probs=98.7
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 003315 122 AIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGF 201 (831)
Q Consensus 122 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 201 (831)
.++..+...|++++|...+.++++..|. +..++..++.+|.+.|++++|+..++++++.++
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~-------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 71 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPS-------------------NAIYYGNRSLAYLRTECYGYALGDATRAIELDK 71 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCc-------------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 3445567789999999999999988554 567889999999999999999999999999875
Q ss_pred CcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH--HHhcCChHHHHHHHHH
Q 003315 202 VWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA--LCKKGSMQEAVEVFLE 265 (831)
Q Consensus 202 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 265 (831)
. +..++..+..+|...|++++|++.|++..+.. +.+...+..+..+ +.+.|++++|++.+++
T Consensus 72 ~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 72 K-YIKGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4 78889999999999999999999999998864 3355566666666 7888999999999884
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.8e-05 Score=66.17 Aligned_cols=87 Identities=14% Similarity=0.030 Sum_probs=65.8
Q ss_pred HcCChhHHHHHHHHHHHcC--CCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH
Q 003315 182 SVGMFDEGIDILFQINRRG--FVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEA 259 (831)
Q Consensus 182 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (831)
..|++++|+..|+++++.+ .+.+..++..+..++...|++++|+..|++.++.. +.+...+..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 3578888889998888874 13356678888888888899999999888888764 45677888888888888888888
Q ss_pred HHHHHHHHhC
Q 003315 260 VEVFLEMEKA 269 (831)
Q Consensus 260 ~~~~~~m~~~ 269 (831)
++.|++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888765
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.98 E-value=8e-05 Score=79.55 Aligned_cols=146 Identities=7% Similarity=-0.056 Sum_probs=104.3
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
....+...+..+...|++++|...|.++++..+............ .......+|..++.+|.+.|++++|+..|++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~----~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 342 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKA----SESFLLAAFLNLAMCYLKLREYTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHH----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHH----HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 456778889999999999999999999998765421000000000 0011246788889999999999999999999
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHH-HHHHHH
Q 003315 196 INRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVE-VFLEME 267 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~ 267 (831)
+++.++. +..++..+..+|...|++++|+..|++.++.. +.+...+..+...+.+.|+++++.+ .+..|.
T Consensus 343 al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 343 ALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888754 77888888889999999999999999888754 3456678888888888888777654 444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.97 E-value=8.3e-05 Score=76.68 Aligned_cols=139 Identities=7% Similarity=-0.065 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 003315 118 CTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQIN 197 (831)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 197 (831)
..+..++..+...|++++|...|.++++..+...... . .+.. ....+....++..++.+|.+.|++++|+..+++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAA-E-DADG-AKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHS-C-HHHH-GGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCcccc-C-hHHH-HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4567788888899999999999998887421100000 0 0000 00112245678888888888999999999998888
Q ss_pred HcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 003315 198 RRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVE 261 (831)
Q Consensus 198 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (831)
+.++. +..++..+..+|...|++++|+..|++..+.. +.+...+..+...+.+.++.+++.+
T Consensus 301 ~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 301 EIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 87644 67788888888888888888888888888754 3456667777777666666665544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00017 Score=76.85 Aligned_cols=215 Identities=10% Similarity=-0.020 Sum_probs=146.4
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 003315 122 AIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGF 201 (831)
Q Consensus 122 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 201 (831)
.-++.+...|++++|.+.+..+++..+......... ............++..++..|...|++++|.+.+.++.+.-.
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGA--SVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSS--SBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHH--HHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 346677888999999999999888755422110000 000000011234678999999999999999999998765421
Q ss_pred C-cCh----hhHHHHHHHHHHcCChhHHHHHHHHHHhc----CCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhC--
Q 003315 202 V-WSI----CSCNYFMNQLVECGKVDMALAVYQHLKRL----GLSLN-EYTYVIVIKALCKKGSMQEAVEVFLEMEKA-- 269 (831)
Q Consensus 202 ~-~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-- 269 (831)
. ++. .+.+.+...+...|++++|..+++..... +..+. ..++..++..+...|++++|...++++...
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 1 121 12233344445568899999999887642 22222 457788999999999999999999987653
Q ss_pred CC--CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCC----hhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 003315 270 GV--TP-NAFAYSTCIEGLCMNGMLDLGYELLLKWEEA--DIPLS----AFAYTVVIRWFCDQNKLEKAECVLLHMEK 338 (831)
Q Consensus 270 ~~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 338 (831)
+. .+ ...++..++..|...|++++|...+++.... ..+.+ ...+..+...+...|++++|...|.+..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 11 2457888899999999999999999987753 12222 34566777888889999999988877754
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.96 E-value=5.7e-05 Score=77.87 Aligned_cols=139 Identities=13% Similarity=-0.006 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA 249 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (831)
...+..++..+.+.|++++|+..|+++++.-.. .. .... .+...+.. +.+...|..+...
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~--~~----------~~~~-------~~~~~~~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG--SR----------AAAE-------DADGAKLQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--HH----------HHSC-------HHHHGGGH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc--Cc----------cccC-------hHHHHHHH-HHHHHHHHHHHHH
Confidence 346778899999999999999999998863100 00 0000 11111100 1223445555555
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHH
Q 003315 250 LCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKA 329 (831)
Q Consensus 250 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 329 (831)
|.+.|++++|++.++++++.. +.+...+..+..+|...|++++|...|+++.+.. |.+...+..+...+...++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555432 2234455555555555555555555555555543 33455555555555555555554
Q ss_pred H
Q 003315 330 E 330 (831)
Q Consensus 330 ~ 330 (831)
.
T Consensus 361 ~ 361 (370)
T 1ihg_A 361 E 361 (370)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.96 E-value=8.4e-05 Score=66.43 Aligned_cols=110 Identities=13% Similarity=-0.043 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHhcC-------CCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHH
Q 003315 117 LCTYAAIVRILCCCGWQKKLESMLLELVRKKT-------DANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEG 189 (831)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 189 (831)
...+...+..+...|++++|...|...+...+ +..... .. ..+....++..++.+|.+.|++++|
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~nla~~~~~~~~~~~A 82 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW-VE-------LDRKNIPLYANMSQCYLNIGDLHEA 82 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH-HH-------HHHTHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH-HH-------HHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 33455566666667777777777766665411 000000 00 0123557899999999999999999
Q ss_pred HHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 003315 190 IDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLG 235 (831)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 235 (831)
+..++++++.++. +..++..++.++...|++++|...|+..++..
T Consensus 83 ~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 83 EETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 9999999998754 88899999999999999999999999999864
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00011 Score=63.67 Aligned_cols=109 Identities=9% Similarity=-0.040 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 003315 118 CTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQIN 197 (831)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 197 (831)
..+...+..+...|++++|...|.++++..|..... . .+ ...+.+..+|..++.++.+.|++++|+..|++++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~-~----a~--~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL 84 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE-E----AF--DHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 84 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT-S----CC--CHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch-h----hh--hhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345566777788889999999999988886652110 0 00 0001234589999999999999999999999999
Q ss_pred Hc-------CCCcChhhH----HHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 198 RR-------GFVWSICSC----NYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 198 ~~-------~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
+. ++. +..+| .....++...|++++|+..|++.++.
T Consensus 85 ~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 85 HYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 98 754 77788 89999999999999999999998864
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00028 Score=77.08 Aligned_cols=177 Identities=10% Similarity=-0.103 Sum_probs=136.5
Q ss_pred HHcCC-hhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCC----------hhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003315 181 VSVGM-FDEGIDILFQINRRGFVWSICSCNYFMNQLVECGK----------VDMALAVYQHLKRLGLSLNEYTYVIVIKA 249 (831)
Q Consensus 181 ~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (831)
.+.|. -++|++.++++++.++. +..+|+.-..++...++ ++++++.++.+.+.. +.+..+|+.-...
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~ 116 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 116 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34444 46889999999998866 77888888888888777 899999999999865 5677888888888
Q ss_pred HHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---
Q 003315 250 LCKKG--SMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNG-MLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQ--- 323 (831)
Q Consensus 250 ~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 323 (831)
+.+.| +++++++.++++.+.. +-+..+|+.-.-++.+.| .++++++.+.++++.+ +-+..+|+.....+.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCC
T ss_pred HHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccc
Confidence 88888 6799999999999875 457778888888888888 8888999988888876 66777887777776653
Q ss_pred -----------CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003315 324 -----------NKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKIN 362 (831)
Q Consensus 324 -----------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 362 (831)
+.++++.+.+++.....+. |...|.-+...+.+.++.+
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCS
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCcc
Confidence 4467777777777766544 6667776666666655533
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.93 E-value=1.5e-05 Score=66.73 Aligned_cols=97 Identities=12% Similarity=0.097 Sum_probs=75.3
Q ss_pred ccCHHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003315 719 KEDVVDASVFWNEMKEMGI-RPD-VISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAI 796 (831)
Q Consensus 719 ~~~~~~a~~~~~~m~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~ 796 (831)
.+++++|+..|++..+.+. .|+ ...|..++.++.+.|++++|++.++++++. .+-++.++..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-FPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4678899999999987541 133 458899999999999999999999999985 2335888999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHH
Q 003315 797 ALVDEMSVKGIQGDDYTKSSLE 818 (831)
Q Consensus 797 ~~~~~~~~~g~~pd~~~~~~l~ 818 (831)
+.+++..+ ..|+........
T Consensus 82 ~~~~~al~--~~p~~~~~~~~~ 101 (117)
T 3k9i_A 82 ELLLKIIA--ETSDDETIQSYK 101 (117)
T ss_dssp HHHHHHHH--HHCCCHHHHHTH
T ss_pred HHHHHHHH--hCCCcHHHHHHH
Confidence 99999988 456554444333
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.91 E-value=6e-05 Score=67.16 Aligned_cols=97 Identities=11% Similarity=-0.013 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----H
Q 003315 206 CSCNYFMNQLVECGKVDMALAVYQHLKRLGLS-LN----EYTYVIVIKALCKKGSMQEAVEVFLEMEKAGV-TPN----A 275 (831)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~ 275 (831)
.++..+...+...|++++|...+++..+.... ++ ...+..+...+...|++++|.+.+++..+... .++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35666777777778888888877776643100 11 13566666777777777777777777654210 011 2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003315 276 FAYSTCIEGLCMNGMLDLGYELLLKWE 302 (831)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (831)
.++..+...+...|++++|...+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344445555555566666555555544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.82 E-value=5.9e-05 Score=76.91 Aligned_cols=143 Identities=10% Similarity=-0.049 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCch-----hHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHH
Q 003315 118 CTYAAIVRILCCCGWQKKLESMLLELVRKKTDANF-----EATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDI 192 (831)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 192 (831)
..+...+..+...|++++|...|.+++...+.... ...+.... ....++..++.+|.+.|++++|+..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~-------l~~~~~~nla~~~~~~g~~~~A~~~ 252 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALA-------VKNPCHLNIAACLIKLKRYDEAIGH 252 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHH-------HHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHH-------HHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34555666666677777777777776665332100 00000000 0113566777777777777777777
Q ss_pred HHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH-HHhcCChHHHHHHHHHHHhC
Q 003315 193 LFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA-LCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~ 269 (831)
++++++.++. +..++..+..+|...|++++|+..|++.++.. +.+...+..+... ....+..+++.+.|.+|...
T Consensus 253 ~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 253 CNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 7777766533 66667777777777777777777777766542 2233444444433 22344556666666666543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.81 E-value=4.7e-05 Score=77.67 Aligned_cols=148 Identities=10% Similarity=-0.096 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003315 206 CSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGL 285 (831)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 285 (831)
..+..+...+.+.|++++|...|++.++.. |+... +...|+.+++...+. ..+|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 344555555566666666666666655432 22211 112222222222111 12566777777
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChHHH
Q 003315 286 CMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISG-YCKFGKINKA 364 (831)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~-~~~~~~~~~A 364 (831)
.+.|++++|+..+++.++.+ |.+...+..+..+|...|++++|...|++..+..+. +...+..+... ....+..+++
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888877764 556777777888888888888888888877665322 33444444444 2334556666
Q ss_pred HHHHHHHHhC
Q 003315 365 LLLHHEMTSK 374 (831)
Q Consensus 365 ~~~~~~~~~~ 374 (831)
...|..|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 6677666554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00016 Score=76.84 Aligned_cols=132 Identities=8% Similarity=-0.001 Sum_probs=95.6
Q ss_pred HHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-----C
Q 003315 126 ILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR-----G 200 (831)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~ 200 (831)
.+...|++++|..++.++++... ...+++.+....+++.|+..|...|++++|..++++++.. |
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~-----------~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG 386 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQE-----------PVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH 386 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHT-----------TTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHH-----------HhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC
Confidence 35579999999999998887632 2223445556789999999999999999999999987643 3
Q ss_pred CC--cChhhHHHHHHHHHHcCChhHHHHHHHHHHh-----cCCC-CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 201 FV--WSICSCNYFMNQLVECGKVDMALAVYQHLKR-----LGLS-LN-EYTYVIVIKALCKKGSMQEAVEVFLEMEK 268 (831)
Q Consensus 201 ~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 268 (831)
.. .-..+++.+..+|...|++++|+.+|++.++ .|.. |+ ..+.+.+...+...+.+++|+.+|.++.+
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 1234578888889999999999988887664 2311 11 22445566667777888888888888765
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=7e-05 Score=64.67 Aligned_cols=104 Identities=14% Similarity=0.004 Sum_probs=86.4
Q ss_pred cccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 003315 718 CKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNL----------EDGITVFNEISDRGLEPD-TVTYTALLCGY 786 (831)
Q Consensus 718 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~ 786 (831)
+.+.+++|.+.++...+.+ +-+...|..+..++...|++ ++|+..|+++++ +.|+ ..+|..++.+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHH
Confidence 4556888999999888754 44667898899899988775 599999999998 5665 78899999999
Q ss_pred HhcC-----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccc
Q 003315 787 LAKG-----------DLDRAIALVDEMSVKGIQGDDYTKSSLERGIEKARI 826 (831)
Q Consensus 787 ~~~g-----------~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~~~ 826 (831)
...| ++++|++.|++.++ +.|+...|..-+....++..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~ka~e 139 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTAKAPQ 139 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHhCHh
Confidence 9875 89999999999999 89999998887776666544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00076 Score=58.01 Aligned_cols=110 Identities=11% Similarity=-0.013 Sum_probs=55.0
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHhHHH
Q 003315 255 SMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCD----QNKLEKAE 330 (831)
Q Consensus 255 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 330 (831)
++++|++.|++..+.| .|+.. +...|...+.+++|.+.|++..+.+ ++..+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3445555555555444 22222 3344444444455555555555443 34444555555554 45555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 003315 331 CVLLHMEKQGVVPDVYAYSALISGYCK----FGKINKALLLHHEMTSKG 375 (831)
Q Consensus 331 ~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~ 375 (831)
+.|++..+.| +...+..|...|.. .+++++|..+|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555543 44455555555555 555555555555555543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00068 Score=58.33 Aligned_cols=111 Identities=5% Similarity=-0.097 Sum_probs=70.8
Q ss_pred CChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHH
Q 003315 184 GMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK----KGSMQEA 259 (831)
Q Consensus 184 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 259 (831)
+++++|+..|+++.+.+ +..++ +...|...+.+++|...|++..+.| ++..+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35667777777777765 22233 5566666666777777777766643 55666666666666 6677777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 003315 260 VEVFLEMEKAGVTPNAFAYSTCIEGLCM----NGMLDLGYELLLKWEEAD 305 (831)
Q Consensus 260 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 305 (831)
++.|++..+.| +...+..|...|.. .+++++|...|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777776654 45555666666665 566666666666666654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00035 Score=57.30 Aligned_cols=86 Identities=10% Similarity=0.110 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------HH
Q 003315 740 DVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGD-------DY 812 (831)
Q Consensus 740 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd-------~~ 812 (831)
+...|..+...+.+.|++++|++.++++++. .+.++.++..++.+|...|++++|++.+++..+ +.|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHH
Confidence 4557788889999999999999999999985 344688899999999999999999999999998 6777 44
Q ss_pred HHHHHHHHHHhccccc
Q 003315 813 TKSSLERGIEKARILQ 828 (831)
Q Consensus 813 ~~~~l~~~~~~~~~~~ 828 (831)
.+..+..++...|+++
T Consensus 80 ~~~~~~~~~~~~~~~~ 95 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQ 95 (111)
T ss_dssp HHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhHh
Confidence 5566667777766553
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00051 Score=53.84 Aligned_cols=83 Identities=19% Similarity=0.089 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
+..++..++..+...|++++|+..|+++++..+. +..++..+..++.+.|++++|...|++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 4567778888888888999999888888877643 66777788888888888888888888887754 345566666666
Q ss_pred HHHhc
Q 003315 249 ALCKK 253 (831)
Q Consensus 249 ~~~~~ 253 (831)
.+.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 65543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.64 E-value=6.3e-05 Score=61.96 Aligned_cols=94 Identities=15% Similarity=0.026 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC-------hh
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLN-------EY 241 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~ 241 (831)
+..++..++..+...|++++|+..|+++++..+. +..++..+..++.+.|++++|+..|++.++.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 3456778888888999999999999998887644 67778888888888899999999888888753 43 44
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHH
Q 003315 242 TYVIVIKALCKKGSMQEAVEVFLE 265 (831)
Q Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~ 265 (831)
.+..+...+...|+++.|++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHH
Confidence 555556666666666655554443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00047 Score=73.29 Aligned_cols=130 Identities=8% Similarity=-0.038 Sum_probs=101.0
Q ss_pred hccCChhHHHHHHHHHHh---C--CCCC--CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCC
Q 003315 93 SLRKEPKIALSFFEQLKR---S--GFSH--NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEG 165 (831)
Q Consensus 93 ~~~~~~~~A~~~~~~~~~---~--~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (831)
..+|+++.|+.+++++.. . |..| ...+++.++.+|...|++++|..++.+++.- .....+++
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i-----------~~~~lG~~ 388 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG-----------YMKLYHHN 388 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------HHHHSCTT
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------HHHHcCCC
Confidence 467999999999998762 2 3332 3567888999999999999999999987654 33444556
Q ss_pred CcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-----CCC-c-ChhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003315 166 STLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR-----GFV-W-SICSCNYFMNQLVECGKVDMALAVYQHLKR 233 (831)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 233 (831)
.+....+++.|+..|...|++++|..+|+++++. |+. | ...+.+.+..++...+.+++|+.+|..+.+
T Consensus 389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667889999999999999999999999997642 432 1 233445666778888999999999998875
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00013 Score=63.06 Aligned_cols=99 Identities=10% Similarity=0.095 Sum_probs=79.6
Q ss_pred HHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCCh----------hHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 003315 181 VSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKV----------DMALAVYQHLKRLGLSLNEYTYVIVIKAL 250 (831)
Q Consensus 181 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (831)
.+.+++++|+..++++++.++. +...+..+..++...+++ ++|+..|++.++.. +.+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 4567899999999999999855 888999899999888765 59999999999875 44677899999999
Q ss_pred HhcC-----------ChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003315 251 CKKG-----------SMQEAVEVFLEMEKAGVTPNAFAYSTCIE 283 (831)
Q Consensus 251 ~~~g-----------~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 283 (831)
...| ++++|++.|+++++. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 8764 789999999998876 576655544444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00042 Score=57.41 Aligned_cols=100 Identities=12% Similarity=0.069 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 724 DASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMS 803 (831)
Q Consensus 724 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 803 (831)
+|+..+++..+.. +.+...|..+..++.+.|++++|++.++++++. .+.+...|..++.+|...|++++|.+.+++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF-DPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566777776543 345678899999999999999999999999985 23357889999999999999999999999988
Q ss_pred hCCC-CCCHHHHHHHHHHHHhcc
Q 003315 804 VKGI-QGDDYTKSSLERGIEKAR 825 (831)
Q Consensus 804 ~~g~-~pd~~~~~~l~~~~~~~~ 825 (831)
+..- .++......+...+.+.+
T Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 81 AAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhccccccHHHHHHHHHHHHHhc
Confidence 7311 134455555555555444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00076 Score=55.84 Aligned_cols=79 Identities=13% Similarity=0.011 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 188 EGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEME 267 (831)
Q Consensus 188 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 267 (831)
+|+..|+++++.++. +...+..+..++...|++++|+..|++.++.. +.+...|..+...+...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 466666766666533 56666777777777777777777777776653 3445566667777777777777777777665
Q ss_pred h
Q 003315 268 K 268 (831)
Q Consensus 268 ~ 268 (831)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00091 Score=52.33 Aligned_cols=83 Identities=10% Similarity=-0.033 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
++..+..++..+...|++++|...+.++++..+. ++.++..++.++...|++++|+..|++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~ 68 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-------------------NAEAWYNLGNAYYKQGDYDEAIEYYQK 68 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-------------------CHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4567778888888899999999999988877443 456778899999999999999999999
Q ss_pred HHHcCCCcChhhHHHHHHHHHHc
Q 003315 196 INRRGFVWSICSCNYFMNQLVEC 218 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~ 218 (831)
+.+..+. +..++..+..++.+.
T Consensus 69 a~~~~p~-~~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 69 ALELDPN-NAEAKQNLGNAKQKQ 90 (91)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHhcCCC-CHHHHHHHHHHHHhc
Confidence 8887644 666676666666543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0017 Score=55.26 Aligned_cols=101 Identities=18% Similarity=0.220 Sum_probs=81.9
Q ss_pred ccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHH
Q 003315 719 KEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQ---NLEDGITVFNEISDRGLEP--DTVTYTALLCGYLAKGDLD 793 (831)
Q Consensus 719 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p--d~~~~~~l~~~~~~~g~~~ 793 (831)
.+....+.+-|.+..+.+. ++..+...+.+++++.+ +.++++.++++..+.. .| ....+..|.-+|.+.|+++
T Consensus 11 ~~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHH
Confidence 4456677778887776663 78888889999999998 6669999999999853 35 3567788888999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003315 794 RAIALVDEMSVKGIQGDDYTKSSLERGIEK 823 (831)
Q Consensus 794 ~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~ 823 (831)
+|+++++.+++ ++|+..--..+...+.+
T Consensus 89 ~A~~y~~~lL~--ieP~n~QA~~Lk~~ie~ 116 (152)
T 1pc2_A 89 KALKYVRGLLQ--TEPQNNQAKELERLIDK 116 (152)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCCCHHHHHHHHHHHH
Confidence 99999999999 89998877776665544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0013 Score=52.80 Aligned_cols=86 Identities=20% Similarity=0.102 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHH
Q 003315 740 DVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKG-IQGDDYTKSSLE 818 (831)
Q Consensus 740 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~pd~~~~~~l~ 818 (831)
+...+..+..++.+.|++++|++.|+++++. -+.+...|..++.+|...|++++|.+.+++..+.. -.++......+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET-DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 4568889999999999999999999999985 23357789999999999999999999999988632 135666666666
Q ss_pred HHHHhccc
Q 003315 819 RGIEKARI 826 (831)
Q Consensus 819 ~~~~~~~~ 826 (831)
..+.+.+.
T Consensus 85 ~~l~~~~~ 92 (100)
T 3ma5_A 85 DAKLKAEG 92 (100)
T ss_dssp HHHHHHHT
T ss_pred HHHHHccc
Confidence 66665554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0014 Score=52.57 Aligned_cols=64 Identities=6% Similarity=-0.040 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKR 233 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 233 (831)
++.++..++..|...|++++|+..|+++++.++. +..++..+..++...|++++|...|++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5567778888888888888888888888877644 666777788888888888888888877664
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.02 E-value=0.69 Score=52.25 Aligned_cols=310 Identities=10% Similarity=0.031 Sum_probs=161.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC--------CC---hHHHHHH
Q 003315 494 AFAQYGAVQKAFDLLNYMKRHGLEPN--FVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCL--------EN---YSAMING 560 (831)
Q Consensus 494 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------~~---~~~l~~~ 560 (831)
+....|+.++++.+++..+..+-..+ ...-..+.-+....|..+++..++......+. +. -..++-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34556777777776666543210112 22233333344556655566666655443221 11 1223333
Q ss_pred HHhcCC-HHHHHHHHHHHHhCCCC-CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCC
Q 003315 561 YCKTGH-TKEAFQLFMRLSNQGVL-VKKSSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIG--ALCQAEE 636 (831)
Q Consensus 561 ~~~~g~-~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~g~ 636 (831)
++-.|. -+++.+.+..+...... .....-..++..++-.|+.+....++..+.+. .+..+...+.- ++...|+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCC
Confidence 333332 24566666665543211 00112223344455667777777777776653 23333333333 4447789
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCc
Q 003315 637 MEQAQLVFNVLVDKGLTPHLVTY--TMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPD 714 (831)
Q Consensus 637 ~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~ 714 (831)
.+.+..+.+.+... ..|....- .++.-+|+..|+.....+++..+.+. ++..+-...+-+++.+..
T Consensus 540 ~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~-------- 607 (963)
T 4ady_A 540 QELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLL-------- 607 (963)
T ss_dssp GGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTS--------
T ss_pred hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhcc--------
Confidence 99888888888763 12222222 23445677888877777788888764 222233333444443221
Q ss_pred hhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--C-
Q 003315 715 ALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNL-EDGITVFNEISDRGLEPDTVTYTALLCGYLAK--G- 790 (831)
Q Consensus 715 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~--g- 790 (831)
++.+.+.++++.+.+.+ .|....-..+.-+....|+. .+|+..+..+.. .+|..+...-+.++..- |
T Consensus 608 -----g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gt 678 (963)
T 4ady_A 608 -----RDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQ 678 (963)
T ss_dssp -----SSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTC
T ss_pred -----CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCC
Confidence 22233455554444433 45444444555555556654 688999999973 56666654444444433 2
Q ss_pred ------CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcccc
Q 003315 791 ------DLDRAIALVDEMSV-KGIQGDDYTKSSLERGIEKARIL 827 (831)
Q Consensus 791 ------~~~~A~~~~~~~~~-~g~~pd~~~~~~l~~~~~~~~~~ 827 (831)
++..-++.+.+... +.-+|+......+..|+..+|+-
T Consensus 679 nna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~ 722 (963)
T 4ady_A 679 TEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGR 722 (963)
T ss_dssp CTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGG
T ss_pred ccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCC
Confidence 34444444444433 23356677777888889888873
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.95 E-value=4.2e-06 Score=84.20 Aligned_cols=390 Identities=11% Similarity=0.047 Sum_probs=178.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 003315 313 YTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQ 392 (831)
Q Consensus 313 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 392 (831)
|..++....+.|.+++-.+.+....+..- +...=+.|+-+|++.++..+..+++ ..||......+..-|..
T Consensus 86 y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~ 156 (624)
T 3lvg_A 86 YMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYD 156 (624)
T ss_dssp SSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHH
Confidence 33444444444444444444433333211 2222334444555555444332221 12344444445555555
Q ss_pred cCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHH
Q 003315 393 KGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDL 472 (831)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 472 (831)
.|.++.|.-+|..+ .-|..|..++.+.|++..|.+.-++. .++.+|..+-.+|...+.+.-|...
T Consensus 157 e~lYeAAKilys~i---------sN~akLAstLV~L~~yq~AVdaArKA------ns~ktWKeV~~ACvd~~EfrLAqic 221 (624)
T 3lvg_A 157 EKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMC 221 (624)
T ss_dssp SCCSTTSSTTGGGS---------CCCTTTSSSSSSCSGGGSSTTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHH
T ss_pred ccCHHHHHHHHHhC---------ccHHHHHHHHHHHHHHHHHHHHHHhc------CChhHHHHHHHHHhCchHHHHHHHh
Confidence 55554444333322 22223444445555555554432221 2555666666666666666655444
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC---
Q 003315 473 FKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGK--- 549 (831)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 549 (831)
--.+.- .......++..|...|.+++.+.+++..+... .....+++.+.-.|+|- +.++..+.++....+
T Consensus 222 GLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNi 294 (624)
T 3lvg_A 222 GLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNI 294 (624)
T ss_dssp HHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCC
T ss_pred cchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccH
Confidence 333331 11122234455666666666666666665332 34555666666566554 233333333322111
Q ss_pred --------CCCChHHHHHHHHhcCCHHHHHHHH--------------------------HHHHhCCCCCCcccHHHHHHH
Q 003315 550 --------CLENYSAMINGYCKTGHTKEAFQLF--------------------------MRLSNQGVLVKKSSCNKLITN 595 (831)
Q Consensus 550 --------~~~~~~~l~~~~~~~g~~~~A~~~~--------------------------~~~~~~~~~~~~~~~~~l~~~ 595 (831)
....|..++..|.+...++.|.... -++..--..-.+.-++.++.+
T Consensus 295 pKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~lL~DLL~v 374 (624)
T 3lvg_A 295 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMV 374 (624)
T ss_dssp TTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTTSHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHHHHHHHHh
Confidence 1112666666666666666554221 111111111122333444444
Q ss_pred HHhcCCHHHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHH------------HHHHHCCCC
Q 003315 596 LLILRDNNNALKLFKTMITL----------NAEPSKSMYDKLIGALCQAEEMEQAQLVF------------NVLVDKGLT 653 (831)
Q Consensus 596 ~~~~~~~~~a~~~~~~~~~~----------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~------------~~~~~~~~~ 653 (831)
+...=|...+.+++++.-.. ....+..+-.++-+.|....+++.-+... +++.++
T Consensus 375 L~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH--- 451 (624)
T 3lvg_A 375 LSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH--- 451 (624)
T ss_dssp HCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC---
T ss_pred ccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC---
Confidence 44333444444444332110 01234556666777777777766544322 222221
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHH
Q 003315 654 PHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMK 733 (831)
Q Consensus 654 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 733 (831)
+-...-.+-...|.+.+++++++.+.++= ++-.|.. ... ...++.+-+.++++-..
T Consensus 452 eL~eFRrIAA~LYkkn~rw~qsi~l~KkD---klykDAi------etA---------------a~S~~~elaeeLL~yFv 507 (624)
T 3lvg_A 452 ELIEFRRIAAYLFKGNNRWKQSVELCKKD---SLYKDAM------QYA---------------SESKDTELAEELLQWFL 507 (624)
T ss_dssp SSHHHHHHHHHHHHTTCHHHHHSSCSSTT---CCTTGGG------TTT---------------TTCCCTTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHhc---ccHHHHH------HHH---------------HHcCCHHHHHHHHHHHH
Confidence 11222233345566777777777654321 1222211 111 12345666666766666
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003315 734 EMGIRPDVISYTVLIAKLCNTQNLEDGITV 763 (831)
Q Consensus 734 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 763 (831)
+.| +..++.+.+..|...=++|.++++
T Consensus 508 ~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 508 QEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 655 445666666666666666666655
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0075 Score=47.13 Aligned_cols=84 Identities=11% Similarity=0.093 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 003315 738 RPDVISYTVLIAKLCNTQN---LEDGITVFNEISDRGLEPD-TVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYT 813 (831)
Q Consensus 738 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~ 813 (831)
+.|...+..+..++...++ .++|.+++++.++ ..|+ +.....++..+.+.|++++|+..|+++++ ..|+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~--~~p~~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD--SNDPNLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--CCCTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCcc
Confidence 4566788888888876655 7999999999998 4554 77888899999999999999999999998 5666555
Q ss_pred HHHHHHHHHhcc
Q 003315 814 KSSLERGIEKAR 825 (831)
Q Consensus 814 ~~~l~~~~~~~~ 825 (831)
...+.+.+.+++
T Consensus 79 ~~~i~~~I~~A~ 90 (93)
T 3bee_A 79 RVTIIESINKAK 90 (93)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 556666666654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.016 Score=57.71 Aligned_cols=77 Identities=17% Similarity=0.025 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003315 738 RPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSL 817 (831)
Q Consensus 738 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l 817 (831)
+.+..+|.++...+...|++++|+..++++++. .|+...|..++..+.-.|++++|.+.+++... +.|...|+.-.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHH
Confidence 456678888888788889999999999999985 58988888899999999999999999999998 79999887644
Q ss_pred H
Q 003315 818 E 818 (831)
Q Consensus 818 ~ 818 (831)
-
T Consensus 350 ~ 350 (372)
T 3ly7_A 350 E 350 (372)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.73 E-value=1.1e-06 Score=88.19 Aligned_cols=118 Identities=19% Similarity=0.125 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
.+.+|..|+++..+.++..+|++.|-++ .|+..|..++.+..+.|.+++-+..+.-..+. ..++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 4567889999999999999998876432 25556888999999999999999888766654 345566678888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKW 301 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 301 (831)
+|++.++..+-.+.+. .||..-...+.+-|...|.++.|.-+|..+
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 9999998765443331 467666777888888888888887776543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.01 Score=61.83 Aligned_cols=94 Identities=12% Similarity=-0.044 Sum_probs=75.1
Q ss_pred ccCChhHHHHHHHHHHh---C--CCCC--CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCC
Q 003315 94 LRKEPKIALSFFEQLKR---S--GFSH--NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGS 166 (831)
Q Consensus 94 ~~~~~~~A~~~~~~~~~---~--~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (831)
..|+++.|+.+++++.. . |..| ...+++.++.+|...|++++|..++.+++.- .....+++.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i-----------~~~~lG~~H 378 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP-----------YSKHYPVYS 378 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------HHHHSCSSC
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH-----------HHHHcCCCC
Confidence 45789999999998762 2 3222 2566888999999999999999999987764 334445566
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINR 198 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 198 (831)
+....+++.|+..|...|++++|..+|+++++
T Consensus 379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 379 LNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 66778999999999999999999999999765
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.012 Score=45.92 Aligned_cols=47 Identities=15% Similarity=-0.026 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003315 186 FDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKR 233 (831)
Q Consensus 186 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 233 (831)
.++|..+++++++.++. ++.+...+...+.+.|++++|...|+.+++
T Consensus 25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444444422 444444444444444444444444444444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0052 Score=64.05 Aligned_cols=94 Identities=3% Similarity=-0.074 Sum_probs=65.9
Q ss_pred cCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-----CCC-
Q 003315 129 CCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR-----GFV- 202 (831)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~- 202 (831)
..|++++|..++.+.++... ...+++.+....+++.|+.+|...|++++|+.++++++.. |..
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~-----------~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 378 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMS-----------SVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS 378 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHT-----------TTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred hccCHHHHHHHHHHHHHHhh-----------CccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 46778888888888776522 2223344556678899999999999999999999887642 321
Q ss_pred c-ChhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003315 203 W-SICSCNYFMNQLVECGKVDMALAVYQHLKR 233 (831)
Q Consensus 203 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 233 (831)
| -..+++.+..+|..+|++++|+.+|++.++
T Consensus 379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 379 LNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 1 233567777777788888888777777654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.097 Score=49.88 Aligned_cols=93 Identities=9% Similarity=-0.046 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-CCH
Q 003315 256 MQEAVEVFLEMEKAGVTPN---AFAYSTCIEGLCMN-----GMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQ-NKL 326 (831)
Q Consensus 256 ~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 326 (831)
...|...++++++. .|+ ...|..+...|.+. |+.++|.+.|++.++.+..-+..++..+.+.+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 46788888888876 566 56888888888884 89999999999999876223478888889988885 899
Q ss_pred hHHHHHHHHHHHCCCC--CCHHHHHH
Q 003315 327 EKAECVLLHMEKQGVV--PDVYAYSA 350 (831)
Q Consensus 327 ~~A~~~~~~~~~~~~~--p~~~~~~~ 350 (831)
+++.+.+++.....+. |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 9999999999987665 66554443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.083 Score=52.66 Aligned_cols=64 Identities=13% Similarity=0.096 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 274 NAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 274 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
+..++..+...+...|++++|...+++++..+ |+...|..+...+.-.|+.++|.+.|++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 44444444444444455555555555555443 34444444455555555555555555555543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.024 Score=44.89 Aligned_cols=83 Identities=14% Similarity=0.099 Sum_probs=61.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChh-hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSIC-SCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKK 253 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (831)
..+..+...|++++|+..|+++++..+. +.. .+..+..++...|++++|...|++.++.. +.+...+..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~-------- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH--------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH--------
Confidence 5667788899999999999999888644 667 88888999999999999999999988764 233333311
Q ss_pred CChHHHHHHHHHHH
Q 003315 254 GSMQEAVEVFLEME 267 (831)
Q Consensus 254 g~~~~A~~~~~~m~ 267 (831)
+.+.++...|++..
T Consensus 75 ~~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 75 KMVMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHHh
Confidence 44555666655543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.027 Score=45.15 Aligned_cols=73 Identities=11% Similarity=0.040 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 003315 740 DVISYTVLIAKLCNTQNLEDGITVFNEISDRG------LEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYT 813 (831)
Q Consensus 740 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g------~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~ 813 (831)
+..-+..++..+.+.|+++.|+..++++.+.- -.+...++..|..+|.+.|++++|..+++++.+ +.|+...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQR 81 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHH
Confidence 44455678888999999999999999988641 123467889999999999999999999999998 7888765
Q ss_pred H
Q 003315 814 K 814 (831)
Q Consensus 814 ~ 814 (831)
.
T Consensus 82 ~ 82 (104)
T 2v5f_A 82 A 82 (104)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.023 Score=46.45 Aligned_cols=98 Identities=18% Similarity=0.208 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 003315 721 DVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLED---GITVFNEISDRGLEP--DTVTYTALLCGYLAKGDLDRA 795 (831)
Q Consensus 721 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~g~~p--d~~~~~~l~~~~~~~g~~~~A 795 (831)
....+.+-+.+....| .|+..+--.+.+++.+..+..+ ++.+++.+...+ .| .......|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3455566666665555 3888888889999999998776 999999988753 23 244567788899999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003315 796 IALVDEMSVKGIQGDDYTKSSLERGIE 822 (831)
Q Consensus 796 ~~~~~~~~~~g~~pd~~~~~~l~~~~~ 822 (831)
+++++.+++ ++|++.-...|...+.
T Consensus 94 ~~~~~~lL~--~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 94 LKYVRGLLQ--TEPQNNQAKELERLID 118 (126)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 999999999 8999877666665544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.024 Score=59.14 Aligned_cols=100 Identities=8% Similarity=-0.023 Sum_probs=71.5
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc---
Q 003315 123 IVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR--- 199 (831)
Q Consensus 123 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 199 (831)
.+..+...|++++|..++.++++.... ..+++.+....+++.|+..|...|++++|+.++++++..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~-----------~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~ 361 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSE-----------RLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRI 361 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSC-----------CCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccC-----------cCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHH
Confidence 344566789999999999988865322 112344556778999999999999999999999987642
Q ss_pred --CCC-c-ChhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003315 200 --GFV-W-SICSCNYFMNQLVECGKVDMALAVYQHLKR 233 (831)
Q Consensus 200 --~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 233 (831)
|.. | -..+++.+..+|...|++++|+.++++..+
T Consensus 362 ~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 362 FFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 211 1 233567777788888888888887777653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.03 Score=58.46 Aligned_cols=94 Identities=9% Similarity=-0.054 Sum_probs=75.0
Q ss_pred ccCChhHHHHHHHHHHh---C--CCCC--CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCC
Q 003315 94 LRKEPKIALSFFEQLKR---S--GFSH--NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGS 166 (831)
Q Consensus 94 ~~~~~~~A~~~~~~~~~---~--~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (831)
..|+++.|+..++++.. . |..| ...+++.++.+|...|++++|..++.+++.- .....+++.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i-----------~~~~lg~~H 367 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP-----------YRIFFPGSH 367 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------HHHHSCSSC
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-----------HHHHcCCCC
Confidence 56899999999998862 1 2222 2566888899999999999999999987754 233444556
Q ss_pred cchHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 003315 167 TLLTRLSDAMIKAYVSVGMFDEGIDILFQINR 198 (831)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 198 (831)
+.....++.|+..|...|++++|+.+|+++++
T Consensus 368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 66778999999999999999999999998764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.037 Score=43.66 Aligned_cols=84 Identities=14% Similarity=-0.011 Sum_probs=64.1
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHH-HHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 003315 122 AIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTR-LSDAMIKAYVSVGMFDEGIDILFQINRRG 200 (831)
Q Consensus 122 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 200 (831)
..+..+...|++++|...+.++++..|. ++. ++..++.+|...|++++|+..|+++++.+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPV-------------------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS-------------------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-------------------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4566788899999999999999988554 556 88899999999999999999999999987
Q ss_pred CCcChhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003315 201 FVWSICSCNYFMNQLVECGKVDMALAVYQHLKR 233 (831)
Q Consensus 201 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 233 (831)
+. +..++.. +.+.++...|++...
T Consensus 66 p~-~~~~~~~--------~~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 66 PD-SPALQAR--------KMVMDILNFYNKDMY 89 (99)
T ss_dssp TT-STHHHHH--------HHHHHHHHHHCCTTH
T ss_pred CC-cHHHHHH--------HHHHHHHHHHHHHhc
Confidence 54 4443321 345566666655443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.25 Score=40.20 Aligned_cols=67 Identities=7% Similarity=0.102 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003315 621 KSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGIT 688 (831)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 688 (831)
.......++.+..+|+.++-.++...++. +.+|++...-.+..+|.+.|+..+|.+++++.-++|++
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33444556666777777777777777544 24566777777777777777777777777777776653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.23 Score=57.28 Aligned_cols=99 Identities=13% Similarity=0.185 Sum_probs=62.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHH
Q 003315 425 LCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKA 504 (831)
Q Consensus 425 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 504 (831)
....|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+..
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~ 726 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGL 726 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHH
Confidence 44667888888776543 2567888888888888888888888887642 23344455556777666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003315 505 FDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLD 544 (831)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 544 (831)
..+.+.....| -++....+|.+.|++++|++++.
T Consensus 727 ~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 727 VTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHH
Confidence 66555555443 12333445556667666666543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.91 E-value=0.42 Score=55.12 Aligned_cols=100 Identities=13% Similarity=0.095 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 003315 244 VIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQ 323 (831)
Q Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (831)
..++..+.+.|..+.|+++.+. |. .-.......|++++|.++.+. ..+...|..+++.+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLARDLLTD------ESAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHc
Confidence 4555555666666666654421 11 112233455666666655432 23455666666666666
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003315 324 NKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHE 370 (831)
Q Consensus 324 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 370 (831)
|+++.|++.|.++.. |..+...|...|+.+....+.+.
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 666666666666542 33344444445555544444333
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.085 Score=42.18 Aligned_cols=66 Identities=15% Similarity=0.056 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC------CCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRG------FVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
++.-+..++..+.+.|++..|+..|+.+++.. ..+....+..+..++.+.|+++.|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44566788888888888888888888877641 1234556677777777777777777777777764
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.084 Score=44.95 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003315 619 PSKSMYDKLIGALCQAE---EMEQAQLVFNVLVDKGLTP--HLVTYTMMIHGYCKINCLREARDVFNDMKQ 684 (831)
Q Consensus 619 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 684 (831)
++..+...+..++++.+ +++++..+|+.+.+.+ .| +...+..|.-+|.+.|++++|.+.++.+++
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444444444455544 3335555555555432 12 233344445555555555555555555554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.44 E-value=4.7 Score=45.68 Aligned_cols=168 Identities=12% Similarity=0.050 Sum_probs=90.8
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCCh---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCccc----HHHHHHHHHhcCCH
Q 003315 530 LCMGGRVEEAEAFLDGLKGKCLENY---SAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSS----CNKLITNLLILRDN 602 (831)
Q Consensus 530 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~ 602 (831)
+.-.|+.+....++..+.+...+.+ -.+.-++...|+.+.+..+++.+.... ++.. ...++-+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~---dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASD---ESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHhcCCCCH
Confidence 3345555555666555544332221 223333445566666666666655431 2221 22334455666776
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH-HHHHHHHHH
Q 003315 603 NNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCL-REARDVFND 681 (831)
Q Consensus 603 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 681 (831)
.....++..+.... ..+......+.-++...|+.+.+.++++.+.+.+ .|.+..-..+.-+..-.|+. .+|++++..
T Consensus 577 ~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 577 SAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 66666777766531 1222222233334445677777777777666542 44555445555555555554 678889999
Q ss_pred HHHCCCCCCHHHHHHHHHHhhccc
Q 003315 682 MKQRGITPDVVTYTVLFDAHSKIN 705 (831)
Q Consensus 682 m~~~~~~p~~~~~~~ll~~~~~~~ 705 (831)
+.. .+|..+-...+-+++.++
T Consensus 655 L~~---D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 655 LTK---DPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp HHT---CSSHHHHHHHHHHHHHHS
T ss_pred Hcc---CCCHHHHHHHHHHHHHHh
Confidence 874 566666555555665544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.15 Score=48.60 Aligned_cols=68 Identities=7% Similarity=-0.021 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHc-----CChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc-CChhHHHHHHHHHHhcCC
Q 003315 169 LTRLSDAMIKAYVSV-----GMFDEGIDILFQINRRGFVWSICSCNYFMNQLVEC-GKVDMALAVYQHLKRLGL 236 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~ 236 (831)
+..+|..++..|... |+.++|...|+++++.++..+..+.......+++. |+.+++.+.+++.+....
T Consensus 198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 455888888888884 89999999999998887654577777788888774 888999999998887543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.12 E-value=0.66 Score=38.57 Aligned_cols=84 Identities=14% Similarity=0.138 Sum_probs=66.2
Q ss_pred CCCCHHHHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 003315 737 IRPDVISYTVLIAKLCNTQNLE---DGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYT 813 (831)
Q Consensus 737 ~~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~ 813 (831)
-.|+..+--.+.|++++..+.+ +++.+++.+...+-.-......-|.-++.+.|++++|+++.+.+++ ++|++.-
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~Q 112 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 112 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHH
Confidence 3678888888899999988654 7899999988743222345567788899999999999999999999 8999977
Q ss_pred HHHHHHHHH
Q 003315 814 KSSLERGIE 822 (831)
Q Consensus 814 ~~~l~~~~~ 822 (831)
...|...+.
T Consensus 113 A~~Lk~~Ie 121 (144)
T 1y8m_A 113 VGALKSMVE 121 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776655444
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.96 E-value=1.6 Score=38.16 Aligned_cols=103 Identities=12% Similarity=0.129 Sum_probs=60.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 003315 212 MNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGML 291 (831)
Q Consensus 212 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 291 (831)
.......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34455677777777766554 3566777777777777777777777766542 23333445555665
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 003315 292 DLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLH 335 (831)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 335 (831)
+.-..+-+.....| -++.-...+.-.|+++++.++|.+
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55554444444443 133334445556777777666644
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.93 E-value=0.26 Score=40.34 Aligned_cols=92 Identities=16% Similarity=0.174 Sum_probs=69.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003315 736 GIRPDVISYTVLIAKLCNTQNL---EDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDY 812 (831)
Q Consensus 736 ~~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~ 812 (831)
+-.|+..+--.+.|++++..+. .+++.+++.+.+.+-.-....+.-|.-|+.+.|++++|+++.+.+++ ++|++.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 4467777777888999988865 46899999998754111356677888899999999999999999999 899997
Q ss_pred HHHHHHHH----HHhcccccc
Q 003315 813 TKSSLERG----IEKARILQY 829 (831)
Q Consensus 813 ~~~~l~~~----~~~~~~~~~ 829 (831)
-...|... +.|-|++.|
T Consensus 113 QA~~Lk~~Ie~ki~kd~~~~~ 133 (134)
T 3o48_A 113 QVGALKSMVEDKIQKEENLYF 133 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhccccc
Confidence 76665554 344455544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.90 E-value=0.4 Score=40.16 Aligned_cols=103 Identities=10% Similarity=0.002 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHcCCh------hHHHHHHHHHHHcCCCcChh-hHHHHHH------HHHHcCChhHHHHHHHHHHhcC
Q 003315 169 LTRLSDAMIKAYVSVGMF------DEGIDILFQINRRGFVWSIC-SCNYFMN------QLVECGKVDMALAVYQHLKRLG 235 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~A~~~~~~~~~~~ 235 (831)
++.+|-..+...-+.|++ +..+++|+++...- +|+.. .+...+. .+...++.++|.++|+.+++..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~-Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL-PPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS-CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC-CccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 566777777777777888 78888888877653 33221 1111111 1233478888888888887652
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 003315 236 LSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTP 273 (831)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 273 (831)
+.=...|......-.++|+...|.+++.+.+..+.+|
T Consensus 91 -KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 -KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp -TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred -HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 2226667777777778888888888888888766443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.70 E-value=1.6 Score=38.22 Aligned_cols=100 Identities=14% Similarity=0.210 Sum_probs=61.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHH
Q 003315 425 LCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKA 504 (831)
Q Consensus 425 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 504 (831)
....|+++.|.++.+++. +...|..|......+|+++-|.+.|.+..+ +..+.-.|...|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 346677777777766652 566777777777777777777777776532 23344445556776666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003315 505 FDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDG 545 (831)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 545 (831)
..+-+.....| -++.....+.-.|+++++.++|.+
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 65555555444 133344455556777777766643
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.66 E-value=0.4 Score=40.15 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=65.7
Q ss_pred CChhhHHHHHHHHHhcCCh------HHHHHHHHHHHhCCCCCCHH----HHHHHH---HHHHhcCChhHHHHHHHHHHHC
Q 003315 238 LNEYTYVIVIKALCKKGSM------QEAVEVFLEMEKAGVTPNAF----AYSTCI---EGLCMNGMLDLGYELLLKWEEA 304 (831)
Q Consensus 238 ~~~~~~~~l~~~~~~~g~~------~~A~~~~~~m~~~~~~p~~~----~~~~l~---~~~~~~~~~~~a~~~~~~~~~~ 304 (831)
.|..+|-..+...-+.|+. ++..++|+++... ++|+.. .|.-+- ..+...+|.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4555666666666666666 6666677766653 344321 111110 0122347788888888888765
Q ss_pred CCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 003315 305 DIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVP 343 (831)
Q Consensus 305 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 343 (831)
+ .--..+|...+..-.++|++..|.+++...+..++.|
T Consensus 90 h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 C-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp C-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred h-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 3 3337778888888888888888888888888877664
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=92.78 E-value=3.5 Score=33.79 Aligned_cols=139 Identities=17% Similarity=0.191 Sum_probs=77.5
Q ss_pred HHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHH
Q 003315 181 VSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAV 260 (831)
Q Consensus 181 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 260 (831)
.-.|..++..++..+..... +..-+|.++--....-+-+-..++++.+-+. -|. ...|+.....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 44677777777777766532 4445666665556666666666666665442 121 1334444444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 003315 261 EVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQG 340 (831)
Q Consensus 261 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 340 (831)
..+-.+- .+.......+..+...|+-++-.+++..+... .++++.....+..+|.+.|+..+|.+++.+.-+.|
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 4443321 23334445555666666666666666664433 25566666666666666666666666666666655
Q ss_pred C
Q 003315 341 V 341 (831)
Q Consensus 341 ~ 341 (831)
+
T Consensus 156 ~ 156 (172)
T 1wy6_A 156 E 156 (172)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.76 E-value=0.3 Score=39.92 Aligned_cols=79 Identities=18% Similarity=0.132 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 003315 569 EAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNN---ALKLFKTMITLNAEP--SKSMYDKLIGALCQAEEMEQAQLV 643 (831)
Q Consensus 569 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~ 643 (831)
.+.+-+.+....|. ++..+...+.|++.+.++... ++.+++...+.+ .| .....-.|.-++.+.|++++|++.
T Consensus 19 ~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 19 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33333443333333 455555566666666555444 555555555432 12 111222233344455555555555
Q ss_pred HHHHHH
Q 003315 644 FNVLVD 649 (831)
Q Consensus 644 ~~~~~~ 649 (831)
++.+++
T Consensus 97 ~~~lL~ 102 (126)
T 1nzn_A 97 VRGLLQ 102 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.50 E-value=4.5 Score=39.30 Aligned_cols=18 Identities=6% Similarity=0.038 Sum_probs=12.6
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 003315 631 LCQAEEMEQAQLVFNVLV 648 (831)
Q Consensus 631 ~~~~g~~~~A~~~~~~~~ 648 (831)
|...|+...|..+|+...
T Consensus 198 yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 198 YLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTBHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHH
Confidence 456677777877777665
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.22 E-value=9 Score=37.24 Aligned_cols=27 Identities=33% Similarity=0.249 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003315 518 PNFVTHNMIIEGLCMGGRVEEAEAFLD 544 (831)
Q Consensus 518 ~~~~~~~~l~~~~~~~g~~~~a~~~~~ 544 (831)
-++.....+...|.+.|++.+|+..|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 466777888888888888888887764
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.73 E-value=7.7 Score=40.39 Aligned_cols=187 Identities=11% Similarity=0.034 Sum_probs=95.5
Q ss_pred CChhHHHHHHHHHHHc-----CCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc-CCCCChhhHHHHHHHH----Hhc
Q 003315 184 GMFDEGIDILFQINRR-----GFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL-GLSLNEYTYVIVIKAL----CKK 253 (831)
Q Consensus 184 ~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~----~~~ 253 (831)
|++++|++.+..+.+. +..........++..+...++++...+.+..+.+. |.. ......+++.+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcC
Confidence 5677777766554432 12234455677777888888888777766655532 221 12222233222 122
Q ss_pred CChHH--HHHHHHHHHh--CC-CCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCC---hhhHHHHHHHH
Q 003315 254 GSMQE--AVEVFLEMEK--AG-VTP---NAFAYSTCIEGLCMNGMLDLGYELLLKWEEA--DIPLS---AFAYTVVIRWF 320 (831)
Q Consensus 254 g~~~~--A~~~~~~m~~--~~-~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~ 320 (831)
...+. -+.+.+.... .| +-- .......|...+...|++.+|..++..+... +.-.. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22221 1111111110 01 000 1123345666777777777777777776532 21111 34566667777
Q ss_pred HhcCCHhHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 321 CDQNKLEKAECVLLHMEK----QGVVPD--VYAYSALISGYCKFGKINKALLLHHEMT 372 (831)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~----~~~~p~--~~~~~~li~~~~~~~~~~~A~~~~~~~~ 372 (831)
...+++..|..++.++.. ....|+ ...+...+..+...+++.+|...|.+..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 777777777777776532 111222 1234455666666777777766665554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.31 E-value=2.7 Score=46.64 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=47.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 748 IAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMS 803 (831)
Q Consensus 748 ~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 803 (831)
.+.+...|+++-|+++-++.... .+-+..+|..|..+|...|+++.|+-.++.+-
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 45566789999999999999984 33358999999999999999999999998874
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.71 E-value=2.3 Score=47.12 Aligned_cols=130 Identities=10% Similarity=-0.023 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHcCC-hhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCC-hhHHHHHHHHHHhc------CCCCC-h
Q 003315 170 TRLSDAMIKAYVSVGM-FDEGIDILFQINRRGFVWSICSCNYFMNQLVECGK-VDMALAVYQHLKRL------GLSLN-E 240 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~------~~~~~-~ 240 (831)
......+++.+.-.++ ++.|+.+++++.+.++..+......++..+...+. --+|.+++.+.++. ..++. .
T Consensus 248 N~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 248 NYLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp SHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 3344455555555555 46788888877776433222222222222222221 11344444333220 11111 0
Q ss_pred ----------hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003315 241 ----------YTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLK 300 (831)
Q Consensus 241 ----------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 300 (831)
.....-.+.+...|+++-|+++.++..... +-+-.+|..|..+|...|+++.|+-.++.
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 011122233444566666666666555431 22344555555555555555555555444
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=89.84 E-value=16 Score=35.80 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003315 518 PNFVTHNMIIEGLCMGGRVEEAEAFL 543 (831)
Q Consensus 518 ~~~~~~~~l~~~~~~~g~~~~a~~~~ 543 (831)
-|+.....+...|.+.+++.+|+..|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 35566666677777777777776665
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.42 E-value=4 Score=41.64 Aligned_cols=66 Identities=15% Similarity=0.262 Sum_probs=33.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHH
Q 003315 211 FMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEK-----AGVTPNAFA 277 (831)
Q Consensus 211 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 277 (831)
++..+...|++++|...+..+.... +.+...|..+|.++.+.|+..+|++.|++..+ .|+.|...+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4444455555555555555554432 33444555555555555555555555554422 255555544
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.25 E-value=2 Score=32.91 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003315 759 DGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLERGI 821 (831)
Q Consensus 759 ~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~ 821 (831)
+..+-++.+....+.|++.+..+.+++|.+.+|+..|.++++-+..+ ..+...+|..++..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 45555666666667777777777777777777777777777766654 233344565555544
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.46 E-value=7.5 Score=46.35 Aligned_cols=177 Identities=12% Similarity=0.026 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCc-----------------------ChhhHHHHHHHHHHcCChhHHHH
Q 003315 170 TRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVW-----------------------SICSCNYFMNQLVECGKVDMALA 226 (831)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------------~~~~~~~l~~~~~~~~~~~~A~~ 226 (831)
+..-..++++|...|++++|...|.++... ... -..-|..++..+-+.+.++.+.+
T Consensus 842 ~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~-~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 842 PIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCCS-CTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344578999999999999999999875321 110 01124455555555555555555
Q ss_pred HHHHHHhcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003315 227 VYQHLKRLGLSLNE----YTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWE 302 (831)
Q Consensus 227 ~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 302 (831)
.-...++...+.+. ..|..+.+.+...|++++|...+-.+.... --......|+..+|..|..+.-..+
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r~~cLr~LV~~lce~~~~~~L~~l----- 993 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LKKSCLLDFVNQLTKQGKINQLLNY----- 993 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SCHHHHHHHHHHHHHHCCHHHHHHH-----
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHhCCChhhhhCC-----
Confidence 54444432111111 135555555666666666666655555432 2233444555555544443321110
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHH-HHHHHH
Q 003315 303 EADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQG--VVPDVYAYSALISGYCKFGKINKALL-LHHEMT 372 (831)
Q Consensus 303 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~~~~~~A~~-~~~~~~ 372 (831)
--.|..++..+++....+.. +...+..|..|=..+...|++.+|-. +|+...
T Consensus 994 ------------------pf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 994 ------------------SMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp ------------------TTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ------------------CCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 01233444444544332211 11122446666666777788766544 455543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.24 E-value=2.8 Score=42.80 Aligned_cols=73 Identities=11% Similarity=0.067 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 003315 743 SYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSV-----KGIQGDDYTKSS 816 (831)
Q Consensus 743 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~pd~~~~~~ 816 (831)
....++..+...|++++|+..+..+... -+-+...|..|+.+|.+.|+..+|++.|+++.+ .|++|...+-..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3445677788999999999999999874 344788999999999999999999999998764 499998886553
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.99 E-value=4 Score=35.04 Aligned_cols=133 Identities=8% Similarity=-0.086 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCcCh-------hhHHHHHHHHHHcCChhHHHHHHHHHHhc--CCCCChh
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRG-FVWSI-------CSCNYFMNQLVECGKVDMALAVYQHLKRL--GLSLNEY 241 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 241 (831)
++..-++.+...|.|+.|+.+.+.++... ..++. .++..+.+++...+++..|...|++.++. .+..+..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45677788889999999999988865432 12231 25677889999999999999999997542 1111111
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 003315 242 TYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRW 319 (831)
Q Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 319 (831)
++..+. ....... ......+...---+..+|.+.+++++|+.+++.+.... -++.+-..|.+.
T Consensus 102 ~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~--Rt~kvnm~LakL 164 (167)
T 3ffl_A 102 VRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ--RTPKINMLLANL 164 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG--CCHHHHHHHHHH
T ss_pred cccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh--cCHHHHHHHHHH
Confidence 111110 0000000 00112233333446677888888888888877654331 234444444443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.37 E-value=8.1 Score=32.14 Aligned_cols=68 Identities=13% Similarity=0.060 Sum_probs=35.7
Q ss_pred CCCcccHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003315 583 LVKKSSCNKLITNLLILRDNN---NALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDK 650 (831)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 650 (831)
.|+..+...+.|++.+..+.+ +++.+++.+.+.+..-.....-.|.-++.+.|++++|++..+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 456666666666666665443 45566666655432112222233444555555555555555555554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.67 E-value=9.9 Score=45.30 Aligned_cols=88 Identities=14% Similarity=0.136 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 003315 311 FAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDV----YAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVI 386 (831)
Q Consensus 311 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 386 (831)
.-|..++..|-+.+.++.+.+.-...++.....+. ..|..+...+...|++++|...+-.+.....+ ...+..+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHH
Confidence 34666777777777777777776666553221121 24667777788888888888777777655443 4456666
Q ss_pred HHHHHhcCChHHHH
Q 003315 387 LKGLCQKGMASATI 400 (831)
Q Consensus 387 l~~~~~~~~~~~a~ 400 (831)
+..++..+..+.-.
T Consensus 978 V~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 978 VNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHHCCHHHHH
T ss_pred HHHHHhCCChhhhh
Confidence 77777777666554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=84.79 E-value=7.7 Score=31.81 Aligned_cols=57 Identities=5% Similarity=-0.081 Sum_probs=43.7
Q ss_pred ccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 003315 719 KEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTV 777 (831)
Q Consensus 719 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~ 777 (831)
..+..+++.+++++...+..-...++-.|.-++.+.|++++|.+..+.+.+ +.|+..
T Consensus 56 ~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 56 VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred HHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 456778888888888655111234667778889999999999999999997 677643
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.47 E-value=5.6 Score=34.14 Aligned_cols=121 Identities=8% Similarity=-0.002 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhcC-CCCCh-------hhHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCH
Q 003315 206 CSCNYFMNQLVECGKVDMALAVYQHLKRLG-LSLNE-------YTYVIVIKALCKKGSMQEAVEVFLEMEKA--GVTPNA 275 (831)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~ 275 (831)
.++-.-+..+...+.++.|+-+.+-+.... .+++. .+...+.+++...|++.+|...|++.++. .+.-+.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344555666777778887777776655321 12332 14556667777778888888888776542 111111
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003315 276 FAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQ 339 (831)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 339 (831)
.+...+. . ...... ....+.+......+..+|.+.+++++|..+++.+...
T Consensus 101 s~~~~~~-~---~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 101 KVRPSTG-N---SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred Ccccccc-c---cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 1111110 0 000000 0112334556666777888888888888887776443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.62 E-value=11 Score=30.87 Aligned_cols=64 Identities=13% Similarity=0.094 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003315 759 DGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLERGIEK 823 (831)
Q Consensus 759 ~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~ 823 (831)
+..+-++.+....+-|++.+..+-+.+|.+.+|+..|..+++-+..+ ..+...+|..++..+.-
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqElkP 134 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELRP 134 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHHhh
Confidence 56667777777788999999999999999999999999999988765 44556667777766543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=81.82 E-value=5.4 Score=30.67 Aligned_cols=62 Identities=10% Similarity=0.204 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003315 721 DVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALL 783 (831)
Q Consensus 721 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~ 783 (831)
+.-+..+-++.+-..++.|++....+.+++|.|.+++.-|+.+++-+..+ +.+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 45566677777777889999999999999999999999999999999865 444455566555
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=80.81 E-value=6.5 Score=36.88 Aligned_cols=64 Identities=13% Similarity=0.097 Sum_probs=34.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003315 751 LCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSL 817 (831)
Q Consensus 751 ~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l 817 (831)
+.+.|++++|++....-++. -+-|......|+.-++-.|++++|.+-++.+.+ +.|+......+
T Consensus 7 ll~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~ 70 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQ 70 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHH
Confidence 34555566666555555543 233455555555555666666666666555555 45554443333
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.42 E-value=57 Score=33.73 Aligned_cols=51 Identities=12% Similarity=0.110 Sum_probs=35.6
Q ss_pred cCChhhHHHHHHHHHHc-----CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003315 463 QGKLGDALDLFKEMKEM-----GHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKR 513 (831)
Q Consensus 463 ~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 513 (831)
.|++++|++.+..+.+. ...........++..|...|+++...+.+..+.+
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 37788888877666432 1223445577788889999999988887776654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 831 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.58 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.57 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.3 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.3 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.18 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.14 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.13 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.12 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.1 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.09 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.04 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.04 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.55 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.55 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.53 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.52 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.51 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.51 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.48 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.45 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.42 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.38 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.37 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.33 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.29 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.26 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.26 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.1 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.08 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.04 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.04 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.03 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.03 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.97 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.93 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.91 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.82 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.8 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.78 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.77 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.76 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.73 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.72 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.66 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.66 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.58 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.55 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.53 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.11 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.01 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.9 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.79 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.21 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.07 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.04 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.0 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.24 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.61 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.32 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.54 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.42 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 80.9 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.8e-21 Score=202.75 Aligned_cols=362 Identities=16% Similarity=0.100 Sum_probs=231.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG 254 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (831)
.++..+.+.|++++|+..|+++++..+. +..++..++.++.+.|++++|...|++.++.. |.+..+|..++..+.+.|
T Consensus 4 ~la~~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 4 ELAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhc
Confidence 4667788899999999999999888754 77888889999999999999999999988764 456778889999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHH
Q 003315 255 SMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLL 334 (831)
Q Consensus 255 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 334 (831)
++++|++.+..+.+.. +.+..............+....+........... .................+....+...+.
T Consensus 82 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred cccccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHH
Confidence 9999999999988764 3445555555555666666666666665555543 3445555566666777777778877777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC
Q 003315 335 HMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLN 414 (831)
Q Consensus 335 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 414 (831)
......+. +...+..+...+...|++++|...+++.++.... +
T Consensus 160 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------------------------------------~ 202 (388)
T d1w3ba_ 160 KAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN------------------------------------F 202 (388)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT------------------------------------C
T ss_pred HhhccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc------------------------------------c
Confidence 77765433 5666777777777888888888887777654321 2
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHH
Q 003315 415 KVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGA 494 (831)
Q Consensus 415 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 494 (831)
...+..+...+...|++++|...+++....+. .+...+..+...+.+.|++++|...|++..+..+. +..++..+...
T Consensus 203 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 280 (388)
T d1w3ba_ 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANA 280 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHH
T ss_pred HHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 33344455555555555555555555544322 23444445555555566666666666665554322 34455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcCCHHHHH
Q 003315 495 FAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTGHTKEAF 571 (831)
Q Consensus 495 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~ 571 (831)
+...|++++|.+.++...... +.+...+..+...+.+.|++++|++.|++..+.+|.. +..++..|.+.|++++|+
T Consensus 281 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 359 (388)
T d1w3ba_ 281 LKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 556666666666665555442 4444455555555555555555555555555444443 333444444444444444
Q ss_pred HHHHHHHhC
Q 003315 572 QLFMRLSNQ 580 (831)
Q Consensus 572 ~~~~~~~~~ 580 (831)
..|+++.+.
T Consensus 360 ~~~~~al~l 368 (388)
T d1w3ba_ 360 MHYKEAIRI 368 (388)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 444444443
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=7.3e-21 Score=199.47 Aligned_cols=363 Identities=17% Similarity=0.076 Sum_probs=249.1
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 003315 123 IVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFV 202 (831)
Q Consensus 123 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 202 (831)
++..+.+.|++++|...+.++++..|. ++.++..++.+|.+.|++++|+..|+++++.++.
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~-------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 65 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPD-------------------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 566777889999999999999988554 5668889999999999999999999999998755
Q ss_pred cChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003315 203 WSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCI 282 (831)
Q Consensus 203 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 282 (831)
+..++..++.++.+.|++++|+..+....+.. +.+...+..........+....+........... ...........
T Consensus 66 -~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 142 (388)
T d1w3ba_ 66 -LAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLG 142 (388)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred -CHHHHHHHHHHhhhhccccccccccccccccc-cccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 78889999999999999999999999998764 3455566666666667777777777776666543 34555566667
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003315 283 EGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKIN 362 (831)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 362 (831)
......+....+...+.+..... |.+...+..+...+...|++++|...+++..+..+. +...+..+...+...|+++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~ 220 (388)
T d1w3ba_ 143 NLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTT
T ss_pred ccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHH
Confidence 77788888899998888888775 667888999999999999999999999999887544 6788999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 363 KALLLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMK 442 (831)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (831)
+|+..+++....+.. +...+..+...+...|++++|+..|++..+..+. +...+..+...+...|++++|++.++...
T Consensus 221 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 298 (388)
T d1w3ba_ 221 RAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhhh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence 999999998775432 3334444445555555555555555554443321 33444444444444455555544444443
Q ss_pred hCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003315 443 DRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKR 513 (831)
Q Consensus 443 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 513 (831)
... +.+...+..+...+...|++++|++.|++..+..+. +..++..+..++...|++++|...++++++
T Consensus 299 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 299 RLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred ccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 321 123334444444444444444444444444433221 233344444444444444444444444443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=6.2e-13 Score=134.22 Aligned_cols=245 Identities=11% Similarity=-0.039 Sum_probs=156.1
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCC
Q 003315 86 EVVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEG 165 (831)
Q Consensus 86 ~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (831)
.-.+..+...|+++.|+..|+.+.+..+ .++.+|..++.++...|++++|...+.++++..|.
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---------------- 85 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKPD---------------- 85 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc----------------
Confidence 3445566667777777777777765532 36777777777777777777777777777766443
Q ss_pred CcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHH
Q 003315 166 STLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVI 245 (831)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 245 (831)
+...+..++..|...|++++|+..++++....+. ............. ..+......
T Consensus 86 ---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~--------------------~~~~~~~~~ 141 (323)
T d1fcha_ 86 ---NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAG--------------------GAGLGPSKR 141 (323)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-----------------------------------C
T ss_pred ---cccccccccccccccccccccccchhhHHHhccc-hHHHHHhhhhhhh--------------------hcccccchh
Confidence 4456667777777777777777777777665432 1111000000000 000001111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 003315 246 VIKALCKKGSMQEAVEVFLEMEKAG-VTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQN 324 (831)
Q Consensus 246 l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 324 (831)
.+..+...+.+.+|.+.|+++.+.. -..+...+..+...+...|++++|...+++..... |.+..++..++..+...|
T Consensus 142 ~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g 220 (323)
T d1fcha_ 142 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGN 220 (323)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccc
Confidence 1222334556677777777766542 12345566777777778888888888888877764 556777788888888888
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 325 KLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTS 373 (831)
Q Consensus 325 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 373 (831)
++++|.+.|++..+..+. +..+|..++.+|.+.|++++|+..|++.++
T Consensus 221 ~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 221 QSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888888887775433 566777788888888888888888877765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.2e-12 Score=131.96 Aligned_cols=222 Identities=9% Similarity=-0.024 Sum_probs=136.0
Q ss_pred cccccCCCChHHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhH
Q 003315 75 IKCSFSYLNTREVVEKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEA 154 (831)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 154 (831)
+...|........++.++...|+++.|+..|..+.+..+ .++..+..++.++...|++++|...+..++...+......
T Consensus 46 l~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 124 (323)
T d1fcha_ 46 VQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLV 124 (323)
T ss_dssp HHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGC
T ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccccccccccccchhhHHHhccchHHHH
Confidence 444556667788888889999999999999999886543 3788999999999999999999999999888754321100
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003315 155 TDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRL 234 (831)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 234 (831)
......... .+.......+..+...+.+.+|...|++..+.
T Consensus 125 ----------~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 125 ----------TPAEEGAGG-----------------------------AGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp ----------C--------------------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------Hhhhhhhhh-----------------------------cccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 000000000 00000111112223334455566666555543
Q ss_pred CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhH
Q 003315 235 GL-SLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAY 313 (831)
Q Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 313 (831)
.. ..+...+..+...+...|++++|+..|++..+.. +-+..++..+..++...|++++|.+.|++.++.+ |.+..++
T Consensus 166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~ 243 (323)
T d1fcha_ 166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSR 243 (323)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHH
Confidence 21 1234455556666666666666666666665542 2345556666666666666666666666666653 4456666
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHH
Q 003315 314 TVVIRWFCDQNKLEKAECVLLHMEK 338 (831)
Q Consensus 314 ~~l~~~~~~~g~~~~A~~~~~~~~~ 338 (831)
..++.+|.+.|++++|.+.|++.++
T Consensus 244 ~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 244 YNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6677777777777777777766655
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=5.2e-10 Score=110.85 Aligned_cols=200 Identities=9% Similarity=-0.055 Sum_probs=167.6
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCC-hhHHHHHHHHHHhcCCCCChhhHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGK-VDMALAVYQHLKRLGLSLNEYTYVIVI 247 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~ 247 (831)
...++..++..+.+.+.+++|+..++++++.+|. +..+|+....++...|+ +++|+..++..++.. +.+..+|+.+.
T Consensus 42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~ 119 (315)
T d2h6fa1 42 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHh
Confidence 4668888999999999999999999999999865 88899999999998774 899999999998865 56788999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC--
Q 003315 248 KALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNK-- 325 (831)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 325 (831)
..+.+.|++++|++.++++.+.. +.+..+|..+..++...|++++|++.++++++.+ |.+...|+.+...+.+.+.
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccc
Confidence 99999999999999999999874 4568899999999999999999999999999986 6678888888877776665
Q ss_pred ----HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 326 ----LEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMTSK 374 (831)
Q Consensus 326 ----~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 374 (831)
+++|.+.+....+..+. +...|+.+...+. ....+++.+.++...+.
T Consensus 198 ~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQ-DRGLSKYPNLLNQLLDL 248 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHT-TTCGGGCHHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHH-hcChHHHHHHHHHHHHh
Confidence 57888888888887544 6777777766544 44467777777777654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=3.4e-10 Score=112.27 Aligned_cols=215 Identities=9% Similarity=-0.035 Sum_probs=156.9
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCC-hhHHHHHHHHHH
Q 003315 119 TYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGM-FDEGIDILFQIN 197 (831)
Q Consensus 119 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~ 197 (831)
++..+..++.+.+..++|+..+.++++..|. +..+|+..+.++...|+ +++|+..+++++
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-------------------~~~a~~~r~~~l~~l~~~~~eal~~~~~al 105 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-------------------NYTVWHFRRVLLKSLQKDLHEEMNYITAII 105 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-------------------ChHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 3444555666677788888888888887555 56678888888887764 788888888888
Q ss_pred HcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 003315 198 RRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFA 277 (831)
Q Consensus 198 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 277 (831)
+.++. +..+++.+..++.+.|++++|+..|+.+++.. +.+...|..+...+.+.|++++|++.++++++.+ +.+..+
T Consensus 106 ~~~p~-~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a 182 (315)
T d2h6fa1 106 EEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSV 182 (315)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHh-hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHH
Confidence 88755 77888888888888888888888888888764 4567788888888888888888888888888764 346667
Q ss_pred HHHHHHHHHhcCC------hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHHHHHH
Q 003315 278 YSTCIEGLCMNGM------LDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVP-DVYAYSA 350 (831)
Q Consensus 278 ~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ 350 (831)
|+.+..++.+.+. +++|+..+.++++.+ |.+...|..+...+. ....+++.+.++...+..+.+ +...+..
T Consensus 183 ~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 260 (315)
T d2h6fa1 183 WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAF 260 (315)
T ss_dssp HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHH
T ss_pred HHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHH
Confidence 7777766666555 467888888887775 667777776666544 444677778887776643332 3445555
Q ss_pred HHHHHHh
Q 003315 351 LISGYCK 357 (831)
Q Consensus 351 li~~~~~ 357 (831)
++..|..
T Consensus 261 l~~~y~~ 267 (315)
T d2h6fa1 261 LVDIYED 267 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=1.3e-08 Score=103.40 Aligned_cols=239 Identities=13% Similarity=0.042 Sum_probs=122.9
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 003315 120 YAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR 199 (831)
Q Consensus 120 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 199 (831)
....+.++...|++++|...+.++++..|+.... ....++..++.+|...|++++|+..|+++.+.
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~--------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 80 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFY--------------SRIVATSVLGEVLHCKGELTRSLALMQQTEQM 80 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHH--------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcH--------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3344555666666666666666666654332111 02235556666677777777777777666543
Q ss_pred CCC-----cChhhHHHHHHHHHHcCChhHHHHHHHHHHhc----CCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 200 GFV-----WSICSCNYFMNQLVECGKVDMALAVYQHLKRL----GLSLN---EYTYVIVIKALCKKGSMQEAVEVFLEME 267 (831)
Q Consensus 200 ~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 267 (831)
... ....++..+...+...|++..+...+...... +.+.. ...+..+...+...|+++.+...++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~ 160 (366)
T d1hz4a_ 81 ARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 160 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 211 11223444555666666766666666554421 11111 1234445555666677777776666665
Q ss_pred hCC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCC----ChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 003315 268 KAG----VTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEA--DIPL----SAFAYTVVIRWFCDQNKLEKAECVLLHME 337 (831)
Q Consensus 268 ~~~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 337 (831)
+.. ......++......+...+++..+...+.+.... .... ....+..+...+...|++++|...++...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 240 (366)
T d1hz4a_ 161 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 240 (366)
T ss_dssp HHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 431 1112233444445555666666666655554432 1111 12234445555566666666666666554
Q ss_pred HCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 338 KQGVVP---DVYAYSALISGYCKFGKINKALLLHHEMT 372 (831)
Q Consensus 338 ~~~~~p---~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 372 (831)
...... ....+..+...+...|++++|...+++..
T Consensus 241 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 278 (366)
T d1hz4a_ 241 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 278 (366)
T ss_dssp CCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 432211 12334445566666666666666666554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=1.7e-08 Score=102.37 Aligned_cols=274 Identities=12% Similarity=0.008 Sum_probs=183.2
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcC----hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCC----
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWS----ICSCNYFMNQLVECGKVDMALAVYQHLKRLGL-SLN---- 239 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~---- 239 (831)
........+..+...|++++|+..++++++..+..+ ..++..+..++...|++++|+..|++..+... .++
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 90 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 90 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 344556678888999999999999999988754422 24567788899999999999999998875311 111
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCC
Q 003315 240 EYTYVIVIKALCKKGSMQEAVEVFLEMEKA----GVTPN---AFAYSTCIEGLCMNGMLDLGYELLLKWEEAD----IPL 308 (831)
Q Consensus 240 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~ 308 (831)
...+..+...+...|++..+...+.+.... +.... ...+..+...+...|+++.+...+....... ...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 170 (366)
T d1hz4a_ 91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 170 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhh
Confidence 235566777888899999999999887642 11111 2355566778889999999999998887642 122
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---
Q 003315 309 SAFAYTVVIRWFCDQNKLEKAECVLLHMEKQ----GVVP--DVYAYSALISGYCKFGKINKALLLHHEMTSKGIKTN--- 379 (831)
Q Consensus 309 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~--- 379 (831)
....+......+...+++..+...+.+.... +..+ ....+..+...+...|++++|...++.........+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 250 (366)
T d1hz4a_ 171 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 250 (366)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHH
Confidence 2445566677788889998888888776542 1111 123455566778888999999988888765433222
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCcC-HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 380 CGVLSVILKGLCQKGMASATIKQFLEFKD----MGFFLN-KVCYDVIVDSLCKLGEVEKAMILFKEMK 442 (831)
Q Consensus 380 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 442 (831)
...+..+...+...|++++|...++.... .+..|+ ...+..+..+|...|++++|.+.+++..
T Consensus 251 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 251 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 22334455666677777777776666542 122222 3445556666666666666666666543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=1.2e-09 Score=105.59 Aligned_cols=200 Identities=14% Similarity=0.068 Sum_probs=141.1
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
...++..++.+|.+.|++++|+..|+++++.++. ++.+++.++.++.+.|++++|+..|++.++.. |.+..++..+..
T Consensus 36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 113 (259)
T d1xnfa_ 36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGI 113 (259)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHH
Confidence 4568889999999999999999999999998855 88999999999999999999999999999865 446778889999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC---
Q 003315 249 ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNK--- 325 (831)
Q Consensus 249 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 325 (831)
.+...|++++|++.|++..+.. +.+......+...+.+.+..+....+........ +....+. ++..+.....
T Consensus 114 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~ 189 (259)
T d1xnfa_ 114 ALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQT 189 (259)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHH
Confidence 9999999999999999998864 3344444444555556666555555555555543 2222222 2233222222
Q ss_pred -HhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003315 326 -LEKAECVLLHMEKQGVVP-DVYAYSALISGYCKFGKINKALLLHHEMTSKGI 376 (831)
Q Consensus 326 -~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 376 (831)
.+.+...+...... .| ...+|..+...|...|++++|...|++.+...+
T Consensus 190 ~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 190 LMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp HHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 22222222111111 11 234566788888899999999999998887543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.12 E-value=1.4e-08 Score=100.34 Aligned_cols=188 Identities=9% Similarity=0.046 Sum_probs=141.3
Q ss_pred CChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 003315 184 GMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVF 263 (831)
Q Consensus 184 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 263 (831)
+..++|..+|+++++..++.+...+...+..+.+.|+.+.|..+|+.+++.........|...+....+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34578888888888764454666777788888889999999999999887542222446888888888889999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-
Q 003315 264 LEMEKAGVTPNAFAYSTCIEG-LCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGV- 341 (831)
Q Consensus 264 ~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~- 341 (831)
+++.+.+ +.+...|...+.. +...|+.+.|..+|+.+.+.. |.++..+..++..+.+.|+++.|+.+|++..+...
T Consensus 158 ~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 9988764 3344444444443 344678888999999888863 66788888888888899999999999998877542
Q ss_pred CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 342 VP--DVYAYSALISGYCKFGKINKALLLHHEMTS 373 (831)
Q Consensus 342 ~p--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 373 (831)
.| ....|...+..-.+.|+.+.+..+++++.+
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22 245677777777778888888888887765
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=2.7e-09 Score=102.85 Aligned_cols=220 Identities=10% Similarity=0.004 Sum_probs=152.5
Q ss_pred ChhHHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHH
Q 003315 97 EPKIALSFFEQLKRS-GFS--HNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLS 173 (831)
Q Consensus 97 ~~~~A~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (831)
+.+.|+.-+.++... ... ....++..++.++.+.|++++|...|.+.++..|+ ++.++
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-------------------~~~a~ 74 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-------------------MPEVF 74 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------------------CHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-------------------CHHHH
Confidence 345666666666532 211 13457888899999999999999999999998665 66789
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 003315 174 DAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKK 253 (831)
Q Consensus 174 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (831)
..++.+|.+.|++++|+..|+++++.++. +..++..++.++...|++++|...|+..++.. +.+......+...+.+.
T Consensus 75 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~ 152 (259)
T d1xnfa_ 75 NYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKL 152 (259)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHh
Confidence 99999999999999999999999998755 77788999999999999999999999998764 34455544455555666
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHH
Q 003315 254 GSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGM----LDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKA 329 (831)
Q Consensus 254 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 329 (831)
+..+.+..+........ ++...+. ++..+..... .+.+...+....... +....++..+...+...|++++|
T Consensus 153 ~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A 228 (259)
T d1xnfa_ 153 DEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSA 228 (259)
T ss_dssp CHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHH
Confidence 66666666666655542 2222222 2222222211 122222211111110 12245677889999999999999
Q ss_pred HHHHHHHHHCCC
Q 003315 330 ECVLLHMEKQGV 341 (831)
Q Consensus 330 ~~~~~~~~~~~~ 341 (831)
.+.|++.+...+
T Consensus 229 ~~~~~~al~~~p 240 (259)
T d1xnfa_ 229 TALFKLAVANNV 240 (259)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHcCC
Confidence 999999998643
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.09 E-value=2e-10 Score=115.84 Aligned_cols=232 Identities=7% Similarity=-0.024 Sum_probs=163.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHH
Q 003315 563 KTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRD--NNNALKLFKTMITLNAEPSKSMY-DKLIGALCQAEEMEQ 639 (831)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~ 639 (831)
..|++++|+.+++++.+..+. +...+..++.++...++ .++|...+.++.... +++...+ ......+...|..++
T Consensus 85 ~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHH
Confidence 345577888888888877655 66677777777777654 788888888888875 3344444 445567778899999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcc
Q 003315 640 AQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCK 719 (831)
Q Consensus 640 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 719 (831)
|...++.+++.++. +...|+.+...+.+.|++++|...+++..+. .|+...+. ..+.. .
T Consensus 163 Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~---~~~~~---------------l 221 (334)
T d1dcea1 163 ELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKELELV---QNAFF---------------T 221 (334)
T ss_dssp HHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHHHHH---HHHHH---------------H
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHHHHHH---HHHHH---------------h
Confidence 99999999887655 7888999999999999988876666554431 22222111 11111 1
Q ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 003315 720 EDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEP-DTVTYTALLCGYLAKGDLDRAIAL 798 (831)
Q Consensus 720 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~ 798 (831)
+..+++...+....... +++...+..++..+...|+.++|++.+.+..+. .| +..++..++.+|...|++++|.++
T Consensus 222 ~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~ 298 (334)
T d1dcea1 222 DPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPE--NKWCLLTIILLMRALDPLLYEKETLQY 298 (334)
T ss_dssp CSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCTGGGHHHHHHH
T ss_pred cchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 22345666666665443 344456667777888889999999999998763 34 456788899999999999999999
Q ss_pred HHHHHhCCCCCCHHHH-HHHHHHHH
Q 003315 799 VDEMSVKGIQGDDYTK-SSLERGIE 822 (831)
Q Consensus 799 ~~~~~~~g~~pd~~~~-~~l~~~~~ 822 (831)
++++.+ +.|+...| +.+...+.
T Consensus 299 ~~~ai~--ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 299 FSTLKA--VDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHH--HCGGGHHHHHHHHHHHH
T ss_pred HHHHHH--HCcccHHHHHHHHHHHh
Confidence 999998 78876544 44544443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.04 E-value=2.2e-08 Score=98.97 Aligned_cols=195 Identities=13% Similarity=0.121 Sum_probs=150.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 003315 600 RDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVF 679 (831)
Q Consensus 600 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 679 (831)
+..+++..++++++....+.+...+..++..+...|+.+.|..+|+.+++..+......|..++..+.+.|+.++|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34578889999998765556677888888999999999999999999998654434557899999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 003315 680 NDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLED 759 (831)
Q Consensus 680 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 759 (831)
+++++.+.. +...|......... ..++.+.|..+|+.+.+. .+.+...|..++..+.+.|++++
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~--------------~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~ 221 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYY--------------CSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNN 221 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHH--------------TSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHH--------------hccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHH
Confidence 999876432 22222222111111 246789999999999865 24456789999999999999999
Q ss_pred HHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003315 760 GITVFNEISDRG-LEPD--TVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDY 812 (831)
Q Consensus 760 A~~~~~~~~~~g-~~pd--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~ 812 (831)
|..+|++.++.. ..|+ ..+|...+.--...|+.+.+.++.+++.+ .-|+..
T Consensus 222 aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~--~~~~~~ 275 (308)
T d2onda1 222 TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT--AFREEY 275 (308)
T ss_dssp HHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HTTTTT
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcccc
Confidence 999999998752 3443 45788888888889999999999999877 445443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.04 E-value=1.6e-09 Score=108.98 Aligned_cols=227 Identities=6% Similarity=-0.082 Sum_probs=128.8
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHhh-HHHHHHHHHhcCChHHHHH
Q 003315 325 KLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFG--KINKALLLHHEMTSKGIKTNCGV-LSVILKGLCQKGMASATIK 401 (831)
Q Consensus 325 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~ 401 (831)
++++|...++...+..+. +...|..+..++...+ ++++|+..++.+.+.... +... +......+...+..+.|+.
T Consensus 88 ~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~ 165 (334)
T d1dcea1 88 LVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELA 165 (334)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHH
Confidence 344555555555544322 4444444444444433 245555555555543222 1222 2222333444455555555
Q ss_pred HHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCC
Q 003315 402 QFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQIVPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGH 481 (831)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 481 (831)
.++.+....+. +...|+.+..++.+.|++++|...+...... ... .......+...+..+++...+.......+
T Consensus 166 ~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~~~l~~~~~a~~~~~~~l~~~~ 239 (334)
T d1dcea1 166 FTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENV----LLK-ELELVQNAFFTDPNDQSAWFYHRWLLGRA 239 (334)
T ss_dssp HHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH----HHH-HHHHHHHHHHHCSSCSHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh----HHH-HHHHHHHHHHhcchhHHHHHHHHHHHhCc
Confidence 55554444332 5666667777777777777665554443321 111 11223334556677778888777776643
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHH
Q 003315 482 KPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMI 558 (831)
Q Consensus 482 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~ 558 (831)
++...+..+...+...++.++|...+.+..+.+ +.+..++..+..++.+.|+.++|.+.++++.+.+|.. |+.|.
T Consensus 240 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~ 317 (334)
T d1dcea1 240 -EPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 317 (334)
T ss_dssp -CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred -chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHH
Confidence 345555666667777788888888888877654 4455667777778888888888888888888877754 44444
Q ss_pred HHH
Q 003315 559 NGY 561 (831)
Q Consensus 559 ~~~ 561 (831)
..+
T Consensus 318 ~~~ 320 (334)
T d1dcea1 318 SKF 320 (334)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=1.1e-06 Score=71.43 Aligned_cols=93 Identities=15% Similarity=-0.026 Sum_probs=78.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG 254 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (831)
.-+..+.+.|++++|+..|.++++.++. +...+..+..++...|++++|+..++..++.+ +.++..|..+...+...|
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHcc
Confidence 5677788889999999999998888754 77888888888889999999999998888765 567788888888888899
Q ss_pred ChHHHHHHHHHHHhC
Q 003315 255 SMQEAVEVFLEMEKA 269 (831)
Q Consensus 255 ~~~~A~~~~~~m~~~ 269 (831)
++++|+..|++..+.
T Consensus 86 ~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKH 100 (117)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999888875
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=1.5e-06 Score=78.08 Aligned_cols=122 Identities=11% Similarity=-0.088 Sum_probs=80.3
Q ss_pred HHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcc
Q 003315 89 EKLYSLRKEPKIALSFFEQLKRSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTL 168 (831)
Q Consensus 89 ~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (831)
++.+...|+++.|++.|..+. ++++.+|..++.++...|++++|...|.+.++.+|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~------------------- 68 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH------------------- 68 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-------------------
Confidence 455567788888888887542 346677777888888888888888888888777554
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcC---------------hhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWS---------------ICSCNYFMNQLVECGKVDMALAVYQHLKR 233 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 233 (831)
.+.+|..++.+|.+.|++++|+..|++++....... ..++..+..++.+.|++++|.+.|+...+
T Consensus 69 ~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 69 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 556777888888888888888888887765421110 12233444455555555555555555544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=2.2e-06 Score=76.95 Aligned_cols=87 Identities=14% Similarity=-0.056 Sum_probs=44.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 003315 212 MNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGML 291 (831)
Q Consensus 212 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 291 (831)
+..+...|+++.|++.|+++. +|++.+|..+...|...|++++|++.|++.++.+ +.+...|..+..++.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 334445555555555554421 2444455555555555555555555555555543 23344555555555555555
Q ss_pred hHHHHHHHHHHH
Q 003315 292 DLGYELLLKWEE 303 (831)
Q Consensus 292 ~~a~~~~~~~~~ 303 (831)
++|...|++.+.
T Consensus 87 ~~A~~~~~kAl~ 98 (192)
T d1hh8a_ 87 DLAIKDLKEALI 98 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.52 E-value=0.0001 Score=70.00 Aligned_cols=224 Identities=10% Similarity=-0.036 Sum_probs=150.7
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCChhhHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVE----CGKVDMALAVYQHLKRLGLSLNEYTYV 244 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 244 (831)
+|.++..|+..+.+.+++++|+..|+++.+.| +..++..+..+|.. ..+...|...++...+.+ ++....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 35678899999999999999999999998876 66777778888876 568889999998887754 445555
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 003315 245 IVIKALCK----KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLC----MNGMLDLGYELLLKWEEADIPLSAFAYTVV 316 (831)
Q Consensus 245 ~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 316 (831)
.+...+.. .++.+.|...++...+.|. ......+...+. .......+...+......+ +...+..|
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhh
Confidence 55555543 4678889999999888762 222233333333 2345566666666666543 56677777
Q ss_pred HHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 003315 317 IRWFCD----QNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCK----FGKINKALLLHHEMTSKGIKTNCGVLSVILK 388 (831)
Q Consensus 317 ~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 388 (831)
...+.. ..+...+...++...+.| +......+...|.. ..++++|+..|+...+.| +...+..+..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 777775 456677777777777754 56666666666665 557888888888877765 3344444444
Q ss_pred HHHh----cCChHHHHHHHHHHHHCC
Q 003315 389 GLCQ----KGMASATIKQFLEFKDMG 410 (831)
Q Consensus 389 ~~~~----~~~~~~a~~~~~~~~~~~ 410 (831)
.|.. ..+.++|.+.|++....|
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 4443 225556666666555444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.51 E-value=2.6e-06 Score=82.60 Aligned_cols=200 Identities=8% Similarity=-0.061 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcC-----CCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC-CC----hh
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRG-----FVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLS-LN----EY 241 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~ 241 (831)
.|...+..|...|++++|+..|.++.+.. ...-..++..++.+|.+.|++++|...+++..+.... .+ ..
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 56677888899999999999999887541 1112356788888898999999999888876642101 11 23
Q ss_pred hHHHHHHHHHh-cCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC------
Q 003315 242 TYVIVIKALCK-KGSMQEAVEVFLEMEKA----GVTP-NAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLS------ 309 (831)
Q Consensus 242 ~~~~l~~~~~~-~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------ 309 (831)
++..++..|.. .|++++|++.++++.+. +..+ -..++..+...+...|++++|...|+++........
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 45556656643 58888888888877542 1111 123566677788888888888888888776531111
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHHh--cCChHHHHHHHHHH
Q 003315 310 AFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVV-PD---VYAYSALISGYCK--FGKINKALLLHHEM 371 (831)
Q Consensus 310 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~---~~~~~~li~~~~~--~~~~~~A~~~~~~~ 371 (831)
...+...+..+...|+++.|.+.+++..+..+. ++ ......++.++-. .+.+++|+..|+.+
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 112334455566677888888888777664211 11 1233445555443 23456666655443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.51 E-value=3.4e-06 Score=81.78 Aligned_cols=207 Identities=9% Similarity=-0.068 Sum_probs=140.2
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 003315 119 TYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINR 198 (831)
Q Consensus 119 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 198 (831)
.|..++.++-..|++++|...|.++++..... .+.+....+|..++.+|.+.|++++|+..|+++.+
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~-------------~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~ 105 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKA-------------GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ 105 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT-------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc-------------CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhH
Confidence 34455677888999999999999887752210 01112346888999999999999999999998775
Q ss_pred cCCC-----cChhhHHHHHHHHHH-cCChhHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 199 RGFV-----WSICSCNYFMNQLVE-CGKVDMALAVYQHLKRL----GLSL-NEYTYVIVIKALCKKGSMQEAVEVFLEME 267 (831)
Q Consensus 199 ~~~~-----~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 267 (831)
.... ....++..++..+.. .|++++|...|++..+. +.++ -..++..++..+...|++++|++.|+++.
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~ 185 (290)
T d1qqea_ 106 IFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLI 185 (290)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 4211 123455666666755 59999999999887642 1111 13457888999999999999999999988
Q ss_pred hCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC---hhhHHHHHHHHHh--cCCHhHHHHHHHH
Q 003315 268 KAGVTPNA------FAYSTCIEGLCMNGMLDLGYELLLKWEEADIP-LS---AFAYTVVIRWFCD--QNKLEKAECVLLH 335 (831)
Q Consensus 268 ~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~~~~~l~~~~~~--~g~~~~A~~~~~~ 335 (831)
........ ..+...+..+...|+++.|...+++..+.... ++ ......++.++-. .+.+++|...|+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 186 KSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 75322111 12344555677899999999999998876411 11 2234555665544 2457788877766
Q ss_pred HHH
Q 003315 336 MEK 338 (831)
Q Consensus 336 ~~~ 338 (831)
+.+
T Consensus 266 ~~~ 268 (290)
T d1qqea_ 266 FMR 268 (290)
T ss_dssp SSC
T ss_pred Hhh
Confidence 554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=2.3e-06 Score=69.53 Aligned_cols=101 Identities=19% Similarity=0.092 Sum_probs=61.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003315 211 FMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGM 290 (831)
Q Consensus 211 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 290 (831)
.++.+.+.|++++|+..|++.++.. |.++..|..+..++.+.|++++|+..++++.+.+ +.+...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 4555666666666666666666553 4455566666666666666666666666666653 3455566666666666666
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHH
Q 003315 291 LDLGYELLLKWEEADIPLSAFAYT 314 (831)
Q Consensus 291 ~~~a~~~~~~~~~~~~~~~~~~~~ 314 (831)
+++|+..|++.++.. |.++..+.
T Consensus 87 ~~~A~~~~~~a~~~~-p~~~~~~~ 109 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHE-ANNPQLKE 109 (117)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHH
Confidence 666666666666553 33443333
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=2.4e-06 Score=74.15 Aligned_cols=97 Identities=10% Similarity=-0.018 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC 251 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (831)
.+...+..|.+.|++++|+..|.++++.++. +...|..+..++...|++++|...|+..++.. +.+..+|..++.++.
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHH
Confidence 3446677888999999999999999998755 88888999999999999999999999988765 456678888999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 003315 252 KKGSMQEAVEVFLEMEKAG 270 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~ 270 (831)
..|++++|++.+++..+..
T Consensus 90 ~~g~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVKVK 108 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHHHcC
Confidence 9999999999999988763
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=3.7e-06 Score=72.85 Aligned_cols=122 Identities=8% Similarity=-0.011 Sum_probs=96.3
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 003315 120 YAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR 199 (831)
Q Consensus 120 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 199 (831)
+...+..+.+.|++++|...|.++++..|. +..+|..++.+|...|++++|+..|+++++.
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~-------------------~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 73 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPS-------------------NAIYYGNRSLAYLRTECYGYALGDATRAIEL 73 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchh-------------------hhhhhhhhHHHHHhccccchHHHHHHHHHHH
Confidence 345566788999999999999999998654 6678999999999999999999999999998
Q ss_pred CCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH--HHhcCChHHHHHH
Q 003315 200 GFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA--LCKKGSMQEAVEV 262 (831)
Q Consensus 200 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~ 262 (831)
++. +..++..++.++...|++++|...|++..+.. +-+...+..+... ..+.+.+++|...
T Consensus 74 ~p~-~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 74 DKK-YIKGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 855 88899999999999999999999999999864 3345544444333 2233344444443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.38 E-value=0.0004 Score=65.61 Aligned_cols=112 Identities=9% Similarity=-0.100 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHh
Q 003315 256 MQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCM----NGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCD----QNKLE 327 (831)
Q Consensus 256 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 327 (831)
...+...+...... .+...+..|...+.. ..+...+...++...+.+ +......+...|.. ..+++
T Consensus 126 ~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 126 FKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHH
T ss_pred hHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchh
Confidence 34444444444332 233344444444443 233344444455444443 34444444444443 34566
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 003315 328 KAECVLLHMEKQGVVPDVYAYSALISGYCK----FGKINKALLLHHEMTSKGI 376 (831)
Q Consensus 328 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~ 376 (831)
+|...|++..+.| ++..+..|..+|.+ ..+.++|.+.|++....|.
T Consensus 200 ~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 200 EALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 6666666666654 44455555555554 3356666666666655543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.37 E-value=9.3e-07 Score=80.63 Aligned_cols=94 Identities=10% Similarity=-0.058 Sum_probs=50.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003315 173 SDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK 252 (831)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (831)
+...+..|.+.|++++|+..|.++++.++. +..+|..++.+|.+.|++++|+..|+..++.. |-++.+|..+..+|.+
T Consensus 7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~~~~~ 84 (201)
T d2c2la1 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLE 84 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 334455555555555555555555555433 45555555555555555555555555555432 2234455555555555
Q ss_pred cCChHHHHHHHHHHHh
Q 003315 253 KGSMQEAVEVFLEMEK 268 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~~ 268 (831)
.|++++|+..|+++.+
T Consensus 85 l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 85 MESYDEAIANLQRAYS 100 (201)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555555443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.33 E-value=2.1e-06 Score=69.06 Aligned_cols=93 Identities=8% Similarity=-0.047 Sum_probs=78.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003315 173 SDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK 252 (831)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (831)
....+..+.+.|++++|+..|+++++.++. ++.++..++.++.+.|++++|+..|++.++.. |.+...|..+...|..
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHH
Confidence 346778888999999999999999888755 78888999999999999999999999988765 4567888888999999
Q ss_pred cCChHHHHHHHHHHH
Q 003315 253 KGSMQEAVEVFLEME 267 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~ 267 (831)
.|++++|++.|++.+
T Consensus 97 ~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 97 EHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999988754
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.29 E-value=3.8e-06 Score=76.37 Aligned_cols=100 Identities=14% Similarity=-0.123 Sum_probs=89.0
Q ss_pred cChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003315 203 WSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCI 282 (831)
Q Consensus 203 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 282 (831)
|+...+...++.+.+.|++++|+..|++.++.. |.++..|..+..+|.+.|++++|+..|+++++.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 566777788999999999999999999998875 5678899999999999999999999999999763 33577899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHC
Q 003315 283 EGLCMNGMLDLGYELLLKWEEA 304 (831)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~~~~~ 304 (831)
.+|...|++++|+..|+++.+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999998764
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.26 E-value=3.4e-06 Score=67.74 Aligned_cols=93 Identities=8% Similarity=-0.149 Sum_probs=83.0
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 003315 120 YAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRR 199 (831)
Q Consensus 120 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 199 (831)
+..++..+.+.|++.+|...+++++...|. ++.+|..++.++.+.|++++|+..|+++++.
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~ 79 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-------------------REEAWRSLGLTQAENEKDGLAIIALNHARML 79 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccc-------------------cchhhhhhhhhhhhhhhHHHhhccccccccc
Confidence 345677888999999999999999988654 5678999999999999999999999999999
Q ss_pred CCCcChhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 003315 200 GFVWSICSCNYFMNQLVECGKVDMALAVYQHLK 232 (831)
Q Consensus 200 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 232 (831)
++. +..++..++..|...|++++|++.+++.+
T Consensus 80 ~p~-~~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 80 DPK-DIAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp CTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc-cccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 855 88899999999999999999999999864
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=2e-06 Score=70.05 Aligned_cols=102 Identities=19% Similarity=0.198 Sum_probs=83.5
Q ss_pred ccCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 003315 719 KEDVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNL---EDGITVFNEISDRGLEPD-TVTYTALLCGYLAKGDLDR 794 (831)
Q Consensus 719 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~ 794 (831)
.+++++|.+.|++....+ +.+..++..+.+++.+.++. ++|+++++++.+....|+ ..++..|+.+|.+.|++++
T Consensus 12 ~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~ 90 (122)
T d1nzna_ 12 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHH
Confidence 578999999999999765 55677999999999886654 569999999987533333 3478899999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003315 795 AIALVDEMSVKGIQGDDYTKSSLERGIEK 823 (831)
Q Consensus 795 A~~~~~~~~~~g~~pd~~~~~~l~~~~~~ 823 (831)
|++.|+++++ +.|+..-...+...+.+
T Consensus 91 A~~~~~~aL~--~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 91 ALKYVRGLLQ--TEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCcCCHHHHHHHHHHHH
Confidence 9999999999 89999877777665544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=9.4e-06 Score=65.90 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=65.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCC-HhHHHHHHHHH
Q 003315 591 KLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEM---EQAQLVFNVLVDKGLTPH-LVTYTMMIHGY 666 (831)
Q Consensus 591 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 666 (831)
.++..+...+++++|.+.|++++..+ +.+..++..++.++.+.++. ++|..+++++++.+..|+ ..+|..++.+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45556666666777777777776655 45666666677777664443 457777777776544333 23566777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003315 667 CKINCLREARDVFNDMKQRGITPDVVT 693 (831)
Q Consensus 667 ~~~g~~~~A~~~~~~m~~~~~~p~~~~ 693 (831)
.+.|++++|++.|+++++ +.|+...
T Consensus 83 ~~~g~~~~A~~~~~~aL~--~~P~~~~ 107 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ--TEPQNNQ 107 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHhhhHHHHHHHHHHHH--hCcCCHH
Confidence 788888888888888776 4565443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.08 E-value=0.0026 Score=61.07 Aligned_cols=74 Identities=8% Similarity=-0.023 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003315 273 PNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALI 352 (831)
Q Consensus 273 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 352 (831)
||..-...++..|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+.. +..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHH
Confidence 444444455566666666666666665422 24455566666666666666554331 455666666
Q ss_pred HHHHhcCCh
Q 003315 353 SGYCKFGKI 361 (831)
Q Consensus 353 ~~~~~~~~~ 361 (831)
..+.+....
T Consensus 77 ~~l~~~~e~ 85 (336)
T d1b89a_ 77 FACVDGKEF 85 (336)
T ss_dssp HHHHHTTCH
T ss_pred HHHHhCcHH
Confidence 665555444
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=2.9e-05 Score=63.90 Aligned_cols=102 Identities=9% Similarity=0.050 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCh-------hhHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNE-------YTYV 244 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~ 244 (831)
.+-.++..+.+.|++++|+..|.++++.++. +..++..+..+|.+.|++++|+..+++.++.. +.+. .+|.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3457888999999999999999999998755 78889999999999999999999999988642 1122 2556
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 003315 245 IVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFA 277 (831)
Q Consensus 245 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 277 (831)
.+...+...+++++|++.|++.... .++...
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 114 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDV 114 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc--CCCHHH
Confidence 6667777788999999999887764 344433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=7.3e-05 Score=65.05 Aligned_cols=128 Identities=13% Similarity=-0.044 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC 251 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (831)
.+...+..+.+.|++++|+..|.++++..+..... .+.-......+. ..+|+.+...|.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~--------------~~~~~~~~~~~~-------~~~~~nla~~y~ 73 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF--------------SNEEAQKAQALR-------LASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC--------------CSHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcccc--------------chHHHhhhchhH-------HHHHHHHHHHHH
Confidence 45577888999999999999999988753221110 000001111111 123445555666
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 003315 252 KKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCD 322 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (831)
+.|++++|+..+++.++.. +.++.++..+..+|...|++++|...|++.++.+ |.+..+...+....-+
T Consensus 74 k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 6666666666666666553 3355566666666666666666666666666654 3345555444444433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=8.5e-05 Score=64.61 Aligned_cols=80 Identities=9% Similarity=-0.033 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKAL 250 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (831)
.+|..++.+|.+.|++++|+..++++++.++. ++.++..++.++...|++++|...|+..++.. |.|......+....
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 46778889999999999999999999998754 88889999999999999999999999998864 33555555554444
Q ss_pred Hh
Q 003315 251 CK 252 (831)
Q Consensus 251 ~~ 252 (831)
.+
T Consensus 141 ~~ 142 (170)
T d1p5qa1 141 QR 142 (170)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.03 E-value=0.0057 Score=58.57 Aligned_cols=127 Identities=13% Similarity=0.039 Sum_probs=53.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003315 175 AMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG 254 (831)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (831)
.++..|.+.|.++.|..+|..+. -+..++..+.+.++++.|.+++... -+..+|..+...+.+..
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~ 83 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGK 83 (336)
T ss_dssp ----------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCc
Confidence 44555556666666666655321 1444555555556555555544322 23445555555555444
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 003315 255 SMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCD 322 (831)
Q Consensus 255 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (831)
....| .+.......+......++..|...|.+++...+++...... +.+...++.++..|++
T Consensus 84 e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak 145 (336)
T d1b89a_ 84 EFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 145 (336)
T ss_dssp CHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHH
Confidence 43322 11111222333333445555555555555555555444321 3344444445554444
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.97 E-value=0.00019 Score=62.15 Aligned_cols=126 Identities=6% Similarity=-0.065 Sum_probs=83.8
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHhcCCCch---hHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003315 120 YAAIVRILCCCGWQKKLESMLLELVRKKTDANF---EATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQI 196 (831)
Q Consensus 120 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 196 (831)
+...+..+.+.|++.+|...|.+++...+.... ....... .....+|..++.+|.+.|++++|+..++++
T Consensus 18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~-------~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~a 90 (168)
T d1kt1a1 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASE-------SFLLAAFLNLAMCYLKLREYTKAVECCDKA 90 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcc-------hhHHHHHHhHHHHHHHhhhcccchhhhhhh
Confidence 334455566666677776666666554221110 0000011 113456778889999999999999999999
Q ss_pred HHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003315 197 NRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKG 254 (831)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 254 (831)
++.++. +..++..++.++...|++++|...|+.+++.. |.+......+.....+.+
T Consensus 91 l~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 91 LGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHH
T ss_pred hhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 988754 88888899999999999999999999988864 345555555544444333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=4.7e-06 Score=87.54 Aligned_cols=227 Identities=9% Similarity=-0.072 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHH
Q 003315 135 KLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQ 214 (831)
Q Consensus 135 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (831)
+|...++++++..|+ ...++..++.++...|++++| |++++..++. .....+. ...
T Consensus 4 eA~q~~~qA~~l~p~-------------------~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~-~a~~~~~-e~~ 59 (497)
T d1ya0a1 4 QSAQYLRQAEVLKAD-------------------MTDSKLGPAEVWTSRQALQDL---YQKMLVTDLE-YALDKKV-EQD 59 (497)
T ss_dssp HHHHHHHHHHHHHGG-------------------GTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHH-HHHHHTH-HHH
T ss_pred HHHHHHHHHHHcCCC-------------------CHHHHhhHHHHHHHHchHHHH---HHHHHHcChh-hHHHHhH-HHH
Confidence 566777777776443 223445677777888888776 7777765422 1111111 111
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 003315 215 LVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK--ALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLD 292 (831)
Q Consensus 215 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 292 (831)
+.+ ..+..+.+.++...+....++......... .....+.++.|+..+++..+.. .++...+..+...+.+.|+.+
T Consensus 60 Lw~-~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~ 137 (497)
T d1ya0a1 60 LWN-HAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTS 137 (497)
T ss_dssp HHH-HHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------
T ss_pred HHH-HHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHH
Confidence 111 124556677776665432233322222221 2223456666766666554432 334556777778888888888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003315 293 LGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEMT 372 (831)
Q Consensus 293 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 372 (831)
+|...++...... ...++..+...+...|++++|...|++..+..+. +...|+.|..++...|+..+|+..|.+.+
T Consensus 138 ~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral 213 (497)
T d1ya0a1 138 AIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp -----CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888777666542 2356777888889999999999999999887544 66789999999999999999999999888
Q ss_pred hCCCCCCHhhHHHHHHHHHh
Q 003315 373 SKGIKTNCGVLSVILKGLCQ 392 (831)
Q Consensus 373 ~~~~~~~~~~~~~ll~~~~~ 392 (831)
.... |-..++..+...+.+
T Consensus 214 ~~~~-~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 214 AVKF-PFPAASTNLQKALSK 232 (497)
T ss_dssp SSSB-CCHHHHHHHHHHHHH
T ss_pred hCCC-CCHHHHHHHHHHHHH
Confidence 7643 455566666655543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.91 E-value=0.00024 Score=60.37 Aligned_cols=123 Identities=9% Similarity=-0.059 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccccCCCCCCCchhhcccCHHHHHHHHHHHHHcCC
Q 003315 658 TYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASVFWNEMKEMGI 737 (831)
Q Consensus 658 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 737 (831)
.+..-+..+.+.|++.+|+..|.+.++. .|.... ............
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~--------------------------~~~~~~~~~~~~------ 64 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEE--------------------------WDDQILLDKKKN------ 64 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTT--------------------------CCCHHHHHHHHH------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchhh--------------------------hhhHHHHHhhhh------
Confidence 3445567778889999999999888753 111000 000000000000
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003315 738 RPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSL 817 (831)
Q Consensus 738 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l 817 (831)
....+|+.+..+|.+.|++++|++.++++++. -+.+..+|..++.++...|++++|+..|++.++ +.|++......
T Consensus 65 -~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~-~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~ 140 (153)
T d2fbna1 65 -IEISCNLNLATCYNKNKDYPKAIDHASKVLKI-DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNS 140 (153)
T ss_dssp -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHH
T ss_pred -HHHHHHhhHHHHHHHhcccchhhhhhhccccc-cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 11247788999999999999999999999984 233689999999999999999999999999999 78877655443
Q ss_pred H
Q 003315 818 E 818 (831)
Q Consensus 818 ~ 818 (831)
+
T Consensus 141 l 141 (153)
T d2fbna1 141 Y 141 (153)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=6.9e-05 Score=61.54 Aligned_cols=57 Identities=12% Similarity=0.066 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003315 556 AMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILRDNNNALKLFKTMI 613 (831)
Q Consensus 556 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 613 (831)
.++..+.+.|++++|+..|.++++.++. +...+..++.++...|++++|+..+++++
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 3455555555555555555555555433 34444444444444555555554444444
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.80 E-value=0.00014 Score=63.22 Aligned_cols=80 Identities=8% Similarity=-0.044 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIK 248 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 248 (831)
...++..++.+|.+.|++++|+..+.++++.++. ++.++..++.++...|++++|+..|+..++.. |.+......+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~ 153 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4557778889999999999999999999988754 88889999999999999999999999988864 345555555544
Q ss_pred HH
Q 003315 249 AL 250 (831)
Q Consensus 249 ~~ 250 (831)
..
T Consensus 154 ~~ 155 (169)
T d1ihga1 154 VK 155 (169)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.78 E-value=0.00033 Score=59.40 Aligned_cols=123 Identities=13% Similarity=-0.044 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC 251 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (831)
.+..-+..+.+.|++.+|+..|.+++..-...... .+.... ..... ....+|+.+...|.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~--------------~~~~~~--~~~~~----~~~~~~~Nla~~~~ 78 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW--------------DDQILL--DKKKN----IEISCNLNLATCYN 78 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC--------------CCHHHH--HHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhh--------------hhHHHH--Hhhhh----HHHHHHhhHHHHHH
Confidence 34467778889999999999999988642211100 000000 00000 11234555556666
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 003315 252 KKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVV 316 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 316 (831)
+.|++++|++.++++++.+ +.+..+|..++.++...|++++|...|++.++.+ |.+..+...+
T Consensus 79 ~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l 141 (153)
T d2fbna1 79 KNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSY 141 (153)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred Hhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 6666666666666666543 3355566666666666666666666666666654 3344444433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=1.5e-05 Score=83.51 Aligned_cols=227 Identities=7% Similarity=-0.118 Sum_probs=124.1
Q ss_pred HHHHHHHHHH--hCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHH
Q 003315 100 IALSFFEQLK--RSGFSHNLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMI 177 (831)
Q Consensus 100 ~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 177 (831)
.|.++|+++. ++++ +.++..++.++...|++++| |++++..+++ .........
T Consensus 4 eA~q~~~qA~~l~p~~---a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~-------------------~a~~~~~e~ 58 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADM---TDSKLGPAEVWTSRQALQDL---YQKMLVTDLE-------------------YALDKKVEQ 58 (497)
T ss_dssp HHHHHHHHHHHHHGGG---TCSSSCSSSSHHHHHHHHHH---HHHHHHHCHH-------------------HHHHHTHHH
T ss_pred HHHHHHHHHHHcCCCC---HHHHhhHHHHHHHHchHHHH---HHHHHHcChh-------------------hHHHHhHHH
Confidence 5788888886 3322 23444555666666666654 6676665332 001111110
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHH--HHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 003315 178 KAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFM--NQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGS 255 (831)
Q Consensus 178 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 255 (831)
..-...+..+++.+++..+....++..-..... ......+.++.|+..+....+.. +++...+..+...+.+.|+
T Consensus 59 --~Lw~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~ 135 (497)
T d1ya0a1 59 --DLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTH 135 (497)
T ss_dssp --HHHHHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------
T ss_pred --HHHHHHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCC
Confidence 111123556777777766554333332222211 22223455566665555544332 3456677788888888999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 003315 256 MQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLH 335 (831)
Q Consensus 256 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 335 (831)
.++|...++...... | ..++..+...+...|++++|...|++..+.. |.+...|+.|+..+...|+..+|...|.+
T Consensus 136 ~~~A~~~~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~r 211 (497)
T d1ya0a1 136 TSAIVKPQSSSCSYI--C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCR 211 (497)
T ss_dssp -------CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998888776531 2 3567778889999999999999999999885 77888999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC
Q 003315 336 MEKQGVVPDVYAYSALISGYCKFG 359 (831)
Q Consensus 336 ~~~~~~~p~~~~~~~li~~~~~~~ 359 (831)
..... .|-..++..|...+.+..
T Consensus 212 al~~~-~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 212 SIAVK-FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred HHhCC-CCCHHHHHHHHHHHHHhh
Confidence 98764 457778888877775543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.76 E-value=0.00017 Score=62.70 Aligned_cols=133 Identities=13% Similarity=-0.011 Sum_probs=78.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003315 173 SDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK 252 (831)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (831)
+...+..+...|++++|+..|.++++.... ........ ...... +.+...|..+...+.+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~------------~~~~~~~~-------~~~~~~-~~~~~~~~nla~~~~~ 89 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEG------------SRAAAEDA-------DGAKLQ-PVALSCVLNIGACKLK 89 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------HHHHSCHH-------HHGGGH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhh------------hhhhhhhH-------HHHHhC-hhhHHHHHHHHHHHHh
Confidence 446677888999999999999987653100 00000000 000000 1233455566666777
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHh
Q 003315 253 KGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLE 327 (831)
Q Consensus 253 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 327 (831)
.|++++|+..++++++.. +.+..+|..+..++...|++++|+..|+++++.+ |.+..+...+..+..+.....
T Consensus 90 ~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~~~l~~~~ 162 (169)
T d1ihga1 90 MSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQK 162 (169)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH
Confidence 777777777777776653 3455566667777777777777777777777664 445555655555544443333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.73 E-value=0.00053 Score=59.24 Aligned_cols=130 Identities=10% Similarity=-0.013 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-cChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRGFV-WSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKA 249 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (831)
..+...+..+.+.|++.+|+..|.+++..-.. +... .......+.+ ....|+-+..+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~---------------~~~~~~~~~~-------~~~~~~Nla~~ 73 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLS---------------EKESKASESF-------LLAAFLNLAMC 73 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC---------------HHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccc---------------hhhhhhcchh-------HHHHHHhHHHH
Confidence 34567888899999999999999987653100 0000 0000000010 11234445555
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 003315 250 LCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQN 324 (831)
Q Consensus 250 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 324 (831)
|.+.|++++|+..+++.++.. +.+..+|..+..++...|++++|...|+++++.+ |.+..+...+..+..+.+
T Consensus 74 ~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 74 YLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 556666666666666655543 3445555556666666666666666666666554 444445444444443333
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.72 E-value=0.00041 Score=60.42 Aligned_cols=128 Identities=7% Similarity=-0.048 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003315 172 LSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC 251 (831)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (831)
.....+......|++++|...|.+++..-.. +... .....+-+...-..+.. .....+..++..+.
T Consensus 13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG-~~l~---------~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~ 78 (179)
T d2ff4a2 13 AEKTAGVHAAAAGRFEQASRHLSAALREWRG-PVLD---------DLRDFQFVEPFATALVE----DKVLAHTAKAEAEI 78 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS-STTG---------GGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-cccc---------cCcchHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 4456777889999999999999999876311 1100 00000111111111111 12335556666666
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCChhhHH
Q 003315 252 KKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEE-----ADIPLSAFAYT 314 (831)
Q Consensus 252 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 314 (831)
+.|++++|+..++++++.. +-+...|..++.+|.+.|+.++|++.|+++.+ .|+.|...+..
T Consensus 79 ~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 79 ACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 6777777777777666653 34556666677777777777777766666533 36666655433
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.66 E-value=3.2e-05 Score=72.46 Aligned_cols=123 Identities=12% Similarity=0.059 Sum_probs=61.9
Q ss_pred HHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChh
Q 003315 127 LCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSIC 206 (831)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 206 (831)
..+.|++++|.+.+.+.++..|. +..++..++..|+..|++++|+..|+++.+..+. +..
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~-------------------d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~ 65 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPK-------------------DASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLP 65 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHH
Confidence 34566666676666666666443 4556666666677777777777777766666433 333
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003315 207 SCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKA 269 (831)
Q Consensus 207 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 269 (831)
.+..+..++...+..+++..........+.+++...+...+..+.+.|+.++|.+.++++.+.
T Consensus 66 ~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 66 GASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 444444443333322222211111111111112223333344455566666666666666553
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.66 E-value=0.00011 Score=61.71 Aligned_cols=96 Identities=9% Similarity=0.076 Sum_probs=66.8
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc----------CChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003315 180 YVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVEC----------GKVDMALAVYQHLKRLGLSLNEYTYVIVIKA 249 (831)
Q Consensus 180 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (831)
|-+.+.+++|+..|+++++.+|. +..++..+..++... +.+++|+..|++.++.. |.+..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence 45667799999999999998855 888888888888754 34567888888888764 4566777777777
Q ss_pred HHhcCC-----------hHHHHHHHHHHHhCCCCCCHHHHH
Q 003315 250 LCKKGS-----------MQEAVEVFLEMEKAGVTPNAFAYS 279 (831)
Q Consensus 250 ~~~~g~-----------~~~A~~~~~~m~~~~~~p~~~~~~ 279 (831)
|...|+ +++|.+.|+++++. .|+...+.
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~ 123 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYL 123 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHH
Confidence 766543 45566666665554 34444433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.58 E-value=0.00019 Score=60.23 Aligned_cols=98 Identities=11% Similarity=0.037 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc
Q 003315 600 RDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQ----------AEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKI 669 (831)
Q Consensus 600 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 669 (831)
+.+++|+..++.+++.. +.+..++..++.+|.. .+.+++|...|+++++.++. +..+|..+..+|...
T Consensus 11 ~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHHHHc
Confidence 34455555555555443 3344445555554442 23456777777777776444 667777777777665
Q ss_pred C-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 003315 670 N-----------CLREARDVFNDMKQRGITPDVVTYTVLFDAH 701 (831)
Q Consensus 670 g-----------~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 701 (831)
| .+++|.+.|++.++ +.|+...+...+..+
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~ 129 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT 129 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred ccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH
Confidence 4 35788888988887 578777666555443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.55 E-value=5.7e-05 Score=70.70 Aligned_cols=123 Identities=11% Similarity=0.002 Sum_probs=75.3
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH
Q 003315 180 YVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEA 259 (831)
Q Consensus 180 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (831)
..+.|++++|+..+++.++..+. |...+..++.+|+..|++++|.+.|+...+.. +.+...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence 45678888888888888888755 88888888888888888888888888888753 22344444444444333333332
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003315 260 VEVFLEMEKAGVTPNAFAYSTCIEGLCMNGMLDLGYELLLKWEEA 304 (831)
Q Consensus 260 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 304 (831)
..........+-+++...+......+...|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 222111111111222334444455566667777777777666654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.53 E-value=0.0016 Score=56.42 Aligned_cols=70 Identities=16% Similarity=0.085 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHh-----cCCCCChh
Q 003315 171 RLSDAMIKAYVSVGMFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKR-----LGLSLNEY 241 (831)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~ 241 (831)
.++..++..+.+.|++++|+..++++++.++. +...+..++.+|.+.|+.++|++.|+++.+ .|+.|...
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 34556666666666666666666666666533 666666666666666666666666666532 35555544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.11 E-value=0.0034 Score=53.07 Aligned_cols=98 Identities=15% Similarity=0.005 Sum_probs=59.5
Q ss_pred HHHHHH--HHHHHHcCChhHHHHHHHHHHHcCCC-cC----------hhhHHHHHHHHHHcCChhHHHHHHHHHHhcC--
Q 003315 171 RLSDAM--IKAYVSVGMFDEGIDILFQINRRGFV-WS----------ICSCNYFMNQLVECGKVDMALAVYQHLKRLG-- 235 (831)
Q Consensus 171 ~~~~~l--~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-- 235 (831)
.+|..+ +..+...|++++|+..|+++++..+. |+ ..+|+.+..+|...|++++|...+++.++..
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 355555 55667889999999999998865322 11 2356666777777777777777776655320
Q ss_pred ---CCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003315 236 ---LSLN-----EYTYVIVIKALCKKGSMQEAVEVFLEMEK 268 (831)
Q Consensus 236 ---~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 268 (831)
..++ ...++.+..+|...|++++|++.|+++++
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111 11344555666666666666666666543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.0034 Score=47.62 Aligned_cols=83 Identities=7% Similarity=-0.042 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHcCCChhhHHHHHHHHHHhcCCCchhHHHHHHHHhcCCCcchHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003315 116 NLCTYAAIVRILCCCGWQKKLESMLLELVRKKTDANFEATDLIEALCGEGSTLLTRLSDAMIKAYVSVGMFDEGIDILFQ 195 (831)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (831)
+++.+..++.++...|++.+|...+.++++..+.... .......++..++.+|.+.|++++|+..|++
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~------------~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~ 71 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEI------------STIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC------------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhc------------cCccHHHHHHHHhhHHHhcCChHHHHHHHHH
Confidence 5666778999999999999999999998876443111 1122456889999999999999999999999
Q ss_pred HHHcCCCcChhhHHHH
Q 003315 196 INRRGFVWSICSCNYF 211 (831)
Q Consensus 196 ~~~~~~~~~~~~~~~l 211 (831)
+++.+|. +..+.+.+
T Consensus 72 aL~l~P~-~~~a~~Nl 86 (95)
T d1tjca_ 72 LLELDPE-HQRANGNL 86 (95)
T ss_dssp HHHHCTT-CHHHHHHH
T ss_pred HHHhCcC-CHHHHHHH
Confidence 9998755 55555544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.90 E-value=0.0024 Score=48.49 Aligned_cols=77 Identities=14% Similarity=0.013 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-----c-ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhh
Q 003315 169 LTRLSDAMIKAYVSVGMFDEGIDILFQINRRGFV-----W-SICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYT 242 (831)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 242 (831)
+...+..++..+.+.|++++|+..|+++++..+. + ...+++.+..++.+.|++++|+..|+++++.. |.++.+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a 82 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRA 82 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHH
Confidence 4455668889999999999999999988764211 1 23467778888888888888888888888754 233444
Q ss_pred HHHH
Q 003315 243 YVIV 246 (831)
Q Consensus 243 ~~~l 246 (831)
++.+
T Consensus 83 ~~Nl 86 (95)
T d1tjca_ 83 NGNL 86 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.79 E-value=0.0081 Score=50.61 Aligned_cols=90 Identities=12% Similarity=0.085 Sum_probs=61.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC-C----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC---
Q 003315 595 NLLILRDNNNALKLFKTMITLNAE-P----------SKSMYDKLIGALCQAEEMEQAQLVFNVLVDK-----GLTPH--- 655 (831)
Q Consensus 595 ~~~~~~~~~~a~~~~~~~~~~~~~-p----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~--- 655 (831)
.+...|++++|+..|++++..... | ....|+.+..+|.+.|++++|...+++.++. ...++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 344445555555555555542211 1 1356778888999999999999988888752 11222
Q ss_pred --HhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003315 656 --LVTYTMMIHGYCKINCLREARDVFNDMKQ 684 (831)
Q Consensus 656 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 684 (831)
...++.+..+|...|++++|+..|++.++
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23567789999999999999999999875
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.21 E-value=0.064 Score=43.26 Aligned_cols=48 Identities=15% Similarity=-0.027 Sum_probs=21.9
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 003315 325 KLEKAECVLLHMEKQGVVPDVYAYSALISGYCK----FGKINKALLLHHEMTSKG 375 (831)
Q Consensus 325 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~ 375 (831)
+.++|.+.|++..+.| ++.....|...|.. ..+.++|..+|+...+.|
T Consensus 74 d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 4455555555555443 33333344444433 234455555555544443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.07 E-value=0.03 Score=43.58 Aligned_cols=83 Identities=16% Similarity=0.155 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 003315 738 RPDVISYTVLIAKLCNTQN---LEDGITVFNEISDRGLEPD-TVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYT 813 (831)
Q Consensus 738 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~ 813 (831)
.|+..+--.+.+++++..+ .++++.+++++... .+.+ ...+..|.-+|.+.|++++|+++++++++ +.|+..-
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~q 108 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 108 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcHH
Confidence 4566677778888987764 56899999999874 2234 35778889999999999999999999999 8999987
Q ss_pred HHHHHHHHHh
Q 003315 814 KSSLERGIEK 823 (831)
Q Consensus 814 ~~~l~~~~~~ 823 (831)
...+...+.+
T Consensus 109 A~~L~~~Ie~ 118 (124)
T d2pqrb1 109 VGALKSMVED 118 (124)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777665544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.04 E-value=0.081 Score=42.61 Aligned_cols=77 Identities=6% Similarity=0.028 Sum_probs=35.5
Q ss_pred ChhHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHH
Q 003315 185 MFDEGIDILFQINRRGFVWSICSCNYFMNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCK----KGSMQEAV 260 (831)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 260 (831)
++++|+..|++..+.| +...+..+.. ....+.++|...|++..+.| ++.....|...|.. ..+.++|+
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 5666667766666654 2223333321 12234555555555554432 33344444444432 23344555
Q ss_pred HHHHHHHhC
Q 003315 261 EVFLEMEKA 269 (831)
Q Consensus 261 ~~~~~m~~~ 269 (831)
+.|++..+.
T Consensus 80 ~~~~~aa~~ 88 (133)
T d1klxa_ 80 QYYSKACGL 88 (133)
T ss_dssp HHHHHHHHT
T ss_pred HHHhhhhcc
Confidence 555554443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.00 E-value=0.16 Score=38.77 Aligned_cols=66 Identities=8% Similarity=0.099 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003315 622 SMYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCLREARDVFNDMKQRGIT 688 (831)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 688 (831)
......++.+.++|+-++-.++...+.+ +-+|++...-.+..+|.+.|...++-+++.+.-++|++
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 3344555666677777777777666655 34556666667777777777777777777777666653
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.24 E-value=1.3 Score=33.76 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=42.8
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003315 587 SSCNKLITNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFNVLVDKGLT 653 (831)
Q Consensus 587 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 653 (831)
..++..+..+...|+-+.-.++++.+.+.+ ++++.....+..+|-+.|...++.+++.++-+.|.+
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 334444455555666666666666655533 677777777777777788777777777777776654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.61 E-value=5.3 Score=39.30 Aligned_cols=351 Identities=11% Similarity=-0.032 Sum_probs=163.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 003315 212 MNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALCKKGSMQEAVEVFLEMEKAGVTPNAFAYSTCIEGLCMNGML 291 (831)
Q Consensus 212 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 291 (831)
+..+.+.++++..+..+. ..+.+...-...+.+..+.|+.++|.+.+..+-..|.. ....+.
T Consensus 79 l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~------------ 140 (450)
T d1qsaa1 79 VNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACD------------ 140 (450)
T ss_dssp HHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHH------------
T ss_pred HHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHH------------
Confidence 445566666654333221 12344444455566666777777777766666544311 111122
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003315 292 DLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKALLLHHEM 371 (831)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~ 371 (831)
.++..+.+.| ..+...+-.-+......|++..|..+...+... ........+.+......... ....
T Consensus 141 ----~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~~p~~~~~---~~~~- 207 (450)
T d1qsaa1 141 ----KLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLANNPNTVLT---FART- 207 (450)
T ss_dssp ----HHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHHCGGGHHH---HHHH-
T ss_pred ----HHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHhChHhHHH---HHhc-
Confidence 2233333332 233344444444555556666665555433221 22333333333322222211 1111
Q ss_pred HhCCCCCCHhhHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCcCHhh---HHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003315 372 TSKGIKTNCGVLSVILKGLCQ--KGMASATIKQFLEFKDMGFFLNKVC---YDVIVDSLCKLGEVEKAMILFKEMKDRQI 446 (831)
Q Consensus 372 ~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 446 (831)
. ..+......+..++.+ ..+.+.+...+.............. ...+...+...+..+.+..++......+.
T Consensus 208 --~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 283 (450)
T d1qsaa1 208 --T--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ 283 (450)
T ss_dssp --S--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC
T ss_pred --C--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc
Confidence 1 1122222222222221 2345555555555443322211111 11122222334555666666666554432
Q ss_pred CCChhhHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003315 447 VPDVVNYTTMICGYCLQGKLGDALDLFKEMKEMGHKPDIITYNVLAGAFAQYGAVQKAFDLLNYMKRHGLEPNFVTHNMI 526 (831)
Q Consensus 447 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 526 (831)
+.....-.+......+++..+...++.|... ......-.--+..++...|+.+.|...+..+-.. ++ |-..
T Consensus 284 --~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~ 354 (450)
T d1qsaa1 284 --STSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPM 354 (450)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHH
T ss_pred --chHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHH
Confidence 3333333444455667777777777766432 1112233344666777778888887777776532 22 2222
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCC------hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 003315 527 IEGLCMGGRVEEAEAFLDGLKGKCLEN------YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNLLILR 600 (831)
Q Consensus 527 ~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 600 (831)
+ +..+.|..-.. -..-....... --.-+..+...|+...|...+..+... .++.....+.....+.|
T Consensus 355 L-Aa~~Lg~~~~~---~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g 427 (450)
T d1qsaa1 355 V-AAQRIGEEYEL---KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQ 427 (450)
T ss_dssp H-HHHHTTCCCCC---CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTT
T ss_pred H-HHHHcCCCCCC---CcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCC
Confidence 2 22222221000 00000000000 112345566788888888888877654 25666777778888889
Q ss_pred CHHHHHHHHHHHH
Q 003315 601 DNNNALKLFKTMI 613 (831)
Q Consensus 601 ~~~~a~~~~~~~~ 613 (831)
.++.|+....++.
T Consensus 428 ~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 428 WWDLSVQATIAGK 440 (450)
T ss_dssp CHHHHHHHHHHTT
T ss_pred ChhHHHHHHHHHH
Confidence 9998887766653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.32 E-value=0.37 Score=37.24 Aligned_cols=66 Identities=14% Similarity=0.074 Sum_probs=30.1
Q ss_pred CCcccHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003315 584 VKKSSCNKLITNLLILRDN---NNALKLFKTMITLNAEPSK-SMYDKLIGALCQAEEMEQAQLVFNVLVDK 650 (831)
Q Consensus 584 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 650 (831)
++..+-...+|++.+..+. ++++.+++.+.+.+ +.+. ..+-.|.-+|.+.|++++|...++.+++.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 3444555555555544332 34555555554432 1121 23333444455555555555555555543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.54 E-value=7 Score=38.37 Aligned_cols=409 Identities=9% Similarity=-0.038 Sum_probs=212.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH--hcCChHHHHHHHHHHHhCCCCCCHHH----HHHHHHHH
Q 003315 212 MNQLVECGKVDMALAVYQHLKRLGLSLNEYTYVIVIKALC--KKGSMQEAVEVFLEMEKAGVTPNAFA----YSTCIEGL 285 (831)
Q Consensus 212 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~l~~~~ 285 (831)
+.-..+.|+.+.+.++...+.. . | ...|...-..-. ......+...++++ .|+... -...+..+
T Consensus 13 a~~a~~~~~~~~~~~~~~~L~d--y-p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~------~p~~P~~~~lr~~~l~~L 82 (450)
T d1qsaa1 13 IKQAWDNRQMDVVEQMMPGLKD--Y-P-LYPYLEYRQITDDLMNQPAVTVTNFVRA------NPTLPPARTLQSRFVNEL 82 (450)
T ss_dssp HHHHHHTTCHHHHHHHSGGGTT--S-T-THHHHHHHHHHHTGGGCCHHHHHHHHHH------CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhhhcC--C-C-CHHHHHHHHHHhccccCCHHHHHHHHHH------CCCChhHHHHHHHHHHHH
Confidence 3445677888877777766532 1 2 233332222222 22344444433332 233322 22334566
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003315 286 CMNGMLDLGYELLLKWEEADIPLSAFAYTVVIRWFCDQNKLEKAECVLLHMEKQGVVPDVYAYSALISGYCKFGKINKAL 365 (831)
Q Consensus 286 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 365 (831)
.+.++++.....+. ..|.+...-..++.+....|+.++|...+..+-..|.. .......
T Consensus 83 ~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~--------------- 141 (450)
T d1qsaa1 83 ARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDK--------------- 141 (450)
T ss_dssp HHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHH---------------
T ss_pred HhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHH---------------
Confidence 67777665443321 23556666666777777788888877777666554422 1122222
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003315 366 LLHHEMTSKGIKTNCGVLSVILKGLCQKGMASATIKQFLEFKDMGFFLNKVCYDVIVDSLCKLGEVEKAMILFKEMKDRQ 445 (831)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 445 (831)
++..+...|.. +...+-.-+......|+...+..+...+-. .........+...... ..+..... ..
T Consensus 142 -l~~~~~~~~~l-t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~----~~~~~~~a~~~l~~~p---~~~~~~~~---~~- 208 (450)
T d1qsaa1 142 -LFSVWRASGKQ-DPLAYLERIRLAMKAGNTGLVTVLAGQMPA----DYQTIASAIISLANNP---NTVLTFAR---TT- 208 (450)
T ss_dssp -HHHHHHHTTCS-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCG----GGHHHHHHHHHHHHCG---GGHHHHHH---HS-
T ss_pred -HHHHHHhcCCC-CHHHHHHHHHHHHHcCChhhHHHHHhhCCh----hHHHHHHHHHHHHhCh---HhHHHHHh---cC-
Confidence 33333333222 223333334444555666666665543211 1223333333333222 22222211 11
Q ss_pred CCCChhhHHHHHHHHHc--cCChhhHHHHHHHHHHcCCCCCcchHHHHHHH----HHhcCCHHHHHHHHHHHHHCCCCCC
Q 003315 446 IVPDVVNYTTMICGYCL--QGKLGDALDLFKEMKEMGHKPDIITYNVLAGA----FAQYGAVQKAFDLLNYMKRHGLEPN 519 (831)
Q Consensus 446 ~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~a~~~~~~~~~~~~~~~ 519 (831)
..+......+..++.+ ..+.+.|..++......... +......+-.. ....+..+.+...+......+ .+
T Consensus 209 -~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~ 284 (450)
T d1qsaa1 209 -GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QS 284 (450)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CC
T ss_pred -CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cc
Confidence 1233333333333332 35788888888887654322 22222222222 223456677877777776653 33
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC---hHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 003315 520 FVTHNMIIEGLCMGGRVEEAEAFLDGLKGKCLEN---YSAMINGYCKTGHTKEAFQLFMRLSNQGVLVKKSSCNKLITNL 596 (831)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 596 (831)
.....-.+......+++..+...++.+....... ..-++.++...|+.++|...|..+... + +|...+.+
T Consensus 285 ~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~---~fYG~LAa- 357 (450)
T d1qsaa1 285 TSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R---GFYPMVAA- 357 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C---SHHHHHHH-
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---C---ChHHHHHH-
Confidence 4444444555566789999988888775432222 234678888899999999999888643 1 23332221
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH
Q 003315 597 LILRDNNNALKLFKTMITLNAEPSKS----MYDKLIGALCQAEEMEQAQLVFNVLVDKGLTPHLVTYTMMIHGYCKINCL 672 (831)
Q Consensus 597 ~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 672 (831)
.++|..-..- .. .....+... .-...+..+...|+...|...|..+... .+......+.....+.|.+
T Consensus 358 ~~Lg~~~~~~--~~---~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~ 429 (450)
T d1qsaa1 358 QRIGEEYELK--ID---KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWW 429 (450)
T ss_dssp HHTTCCCCCC--CC---CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCH
T ss_pred HHcCCCCCCC--cC---CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCCh
Confidence 1122110000 00 000000100 0112355678899999999999988764 2566677788888899999
Q ss_pred HHHHHHHHHHH
Q 003315 673 REARDVFNDMK 683 (831)
Q Consensus 673 ~~A~~~~~~m~ 683 (831)
+.|+....+..
T Consensus 430 ~~aI~a~~~~~ 440 (450)
T d1qsaa1 430 DLSVQATIAGK 440 (450)
T ss_dssp HHHHHHHHHTT
T ss_pred hHHHHHHHHHH
Confidence 99998777653
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.42 E-value=2.6 Score=30.35 Aligned_cols=65 Identities=12% Similarity=0.071 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003315 758 EDGITVFNEISDRGLEPDTVTYTALLCGYLAKGDLDRAIALVDEMSVKGIQGDDYTKSSLERGIEK 823 (831)
Q Consensus 758 ~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~~~~~~ 823 (831)
=++.+-++.+....+.|++.+..+-+.+|.+.+|+..|.++++....+ ..++...|..++..+.-
T Consensus 23 we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqelkp 87 (105)
T d1v54e_ 23 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELRP 87 (105)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHhh
Confidence 356666777777778888888888888888888888888888887765 33445567666665543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.90 E-value=2.9 Score=30.03 Aligned_cols=62 Identities=10% Similarity=0.204 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003315 721 DVVDASVFWNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTYTALL 783 (831)
Q Consensus 721 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~pd~~~~~~l~ 783 (831)
+.-+..+-++.+-..++.|++....+.+++|.|.+++.-|+.+++-...+ +.++..+|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHH
Confidence 45566777777777889999999999999999999999999999998865 444444555544
|